Citrus Sinensis ID: 018003

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYVN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccEEccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHHHHccccccHHHHHHHHccccccccEEEEEEcccccccccHHHHHHHHHHHcccHHHcccccccccHHHHHHHHHHcccEEEEEEEcccEEEEEEEccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccccccccccccccccccccccccccccccHEEccccccEccccccccccccccccccccccccccccHHHccccccccHHHHHccccccccccccccccccEEEEEEcccHHHHHccccHHHHHHcccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHccccccccEEEEEccccccccccccccEEEEEEHHcccccHHHHHHHHHHHcccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHcccEEEEccHHHccccccHEEcHHHHHHcccccEEEEEccccccccHEccc
Coil and Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASStafvetkpsepsfveneastsknvlacpicykpltwigdsslsiesaagsslqcntckktysgvgthfdmtaasgskdygelmspateffrmpFMSFIYErgwrqnfvwggfpgpeKEFELMKGYlkpvlggniidascgsglfsRIFAKSGLFSLVVALDYSENMLKQCYEFVQqesnfpkenfLLVRadisrlpfasssidAVHAGAaihcwsspstgvaeisrvlrpggvfvgttyivdgpfnlipfsRLLRQVCFLDlkivgfsipvlgfddLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLcnllnyvn
Flexible Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASSTafvetkpsepsfveneastsknvlACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYVN
Low Complexity Region (SEG)
MATIvssssffsvsLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDsslsiesaagsslQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYVN
Disordered region (IsUnstruct)
********************************PIFIRKFVAKIRASSTAF*******************NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYV*
Disordered Region (DISOPRED)
**********************************************************************VLACPICYKPLTWIGDS******A*G*SLQCNTCKKTYSGVGTHFDMTA***********SPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYVN
Disordered Region (DISEMBL)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRAS*********************SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYVN
Disordered Region (DISPRO)
**********FSVSLPGR*****RCSVKPNPSPIFIRKFVAKIRAS**AFV*****************KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYVN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNYVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q8LBV4	355	Uncharacterized methyltra	yes	no	0.649	0.661	0.704	2e-98
Q0WPT7	352	Uncharacterized methyltra	no	no	0.701	0.721	0.492	1e-69
E4QJB8	296	Malonyl-CoA O-methyltrans	yes	no	0.411	0.503	0.297	3e-09
E3G327	251	Malonyl-CoA O-methyltrans	yes	no	0.279	0.402	0.360	1e-08
Q24W96	253	Demethylmenaquinone methy	yes	no	0.342	0.490	0.312	2e-08
Q2YY85	241	Demethylmenaquinone methy	yes	no	0.309	0.464	0.328	5e-08
P67063	241	Demethylmenaquinone methy	yes	no	0.309	0.464	0.328	5e-08
A8Z450	241	Demethylmenaquinone methy	yes	no	0.309	0.464	0.328	5e-08
Q6G992	241	Demethylmenaquinone methy	yes	no	0.309	0.464	0.328	5e-08
P67062	241	Demethylmenaquinone methy	yes	no	0.309	0.464	0.328	5e-08

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  359 bits (921), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 193/237 (81%), Gaps = 2/237 (0%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFAS 246
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE  +LVRADI+RLPF S
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252

Query: 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 303
            S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQ 309

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  263 bits (672), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 129/262 (49%), Positives = 175/262 (66%), Gaps = 8/262 (3%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGEL 129
            V ACP+CY+PL   G S +++++   S  +C  C KTYS    + D+T  +   DY E+
Sbjct: 77  QVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEV 136

Query: 130 MSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
               TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSG
Sbjct: 137 KPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSG 196

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLPFASSS 248
           LFSR FA+SG +S V+ALDYSENML+QC EF++ ++ F    N  +VRAD+SRLPF S S
Sbjct: 197 LFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGS 256

Query: 249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV---DGPFNLIPF-SRLLRQV 304
           +DAVHAGAA+HCW SP+  +AEI RVLR GGVFVGTT++      P+ + PF SR+L+  
Sbjct: 257 VDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPSTPWIIRPFQSRILQSY 316

Query: 305 CFL---DLKIVGFSIPVLGFDD 323
            +L   ++K V  S  +  ++D
Sbjct: 317 NYLMQDEIKDVCTSCGLTDYED 338

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|E4QJB8|BIOC_METS6 Malonyl-CoA O-methyltransferase BioC OS=Methylovorus sp. (strain MP688) GN=bioC PE=3 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 81/178 (45%), Gaps = 29/178 (16%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ---CYEFVQQESNFPKENFLLVRA 237
           ++DA CG+G  S   +     S V++LD +  MLK+       VQ+   F + +   V A
Sbjct: 52  VLDAGCGTGHASAALSARYRQSQVISLDIAMGMLKKTMAARSLVQRLFGFDRRH--AVCA 109

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
           DI RLP A++SID V +  AI   +       EI RVL+P G+ + +T    GP  L   
Sbjct: 110 DIERLPLAAASIDLVWSNMAIQWCNDLDQAFGEIQRVLKPEGLLMFSTL---GPDTLKEL 166

Query: 298 SRLLRQ-------VCFLDLKIV-------GFSIPVLG-------FDDLKRIFRQFQLV 334
               RQ         F+D+  +       GF+ PVL        +DD+  + R  + +
Sbjct: 167 RAATRQDNTHVTVSRFIDMHDIGDALVRAGFNAPVLDVEYFELTYDDVMGVMRDLKAI 224

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Methylovorus sp. (strain MP688) (taxid: 887061)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|E3G327|BIOC_ENTCS Malonyl-CoA O-methyltransferase BioC OS=Enterobacter cloacae (strain SCF1) GN=bioC PE=3 SV=1

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 10/111 (9%)

Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238
             ++DA CG G  SR +  +G    V ALD S  ML +     QQ ++        V+AD
Sbjct: 44  ARVLDAGCGPGGISRYWRDNGCE--VTALDLSAQMLAEARR--QQAADH------YVQAD 93

Query: 239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289
           I  +P AS+  D V +  A+    S    V E+ R+LRPGGV   TT   D
Sbjct: 94  IEAIPLASAQFDLVWSNLAVQWCDSLQDAVQELYRMLRPGGVLAFTTLAAD 144

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Enterobacter cloacae (strain SCF1) (taxid: 701347)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|Q24W96|UBIE_DESHY Demethylmenaquinone methyltransferase OS=Desulfitobacterium hafniense (strain Y51) GN=ubiE PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 20/144 (13%)

Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-G 199
            MSF  ++GWR+  V        +  E      KP  G  ++D  CG+   S   A + G
Sbjct: 43  LMSFGLDKGWRKKAV--------QTVEA-----KP--GMTMVDICCGTAQLSLELAMTVG 87

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVHAGAAI 258
               +  LD+SENMLK+  E +   +  P  + + +R  D   LPFA +S D    G  +
Sbjct: 88  EQGQITGLDFSENMLKKAQENL---AGSPYRSIIELRQGDAMNLPFADNSFDGATVGWGL 144

Query: 259 HCWSSPSTGVAEISRVLRPGGVFV 282
                   GV E+ RV++PGG+ V
Sbjct: 145 RNLPDLEKGVQEMIRVVKPGGMVV 168

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q2YY85|UBIE_STAAB Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ubiE PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFGDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 278 GGVFV 282
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain bovine RF122 / ET3-1) (taxid: 273036)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67063|UBIE_STAAW Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MW2) GN=ubiE PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 278 GGVFV 282
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|A8Z450|UBIE_STAAT Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ubiE PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 278 GGVFV 282
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain USA300 / TCH1516) (taxid: 451516)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q6G992|UBIE_STAAS Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=ubiE PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 278 GGVFV 282
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67062|UBIE_STAAN Demethylmenaquinone methyltransferase OS=Staphylococcus aureus (strain N315) GN=ubiE PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 60/125 (48%), Gaps = 13/125 (10%)

Query: 166 FELMKGYLKPVL-------GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC 217
           FE  K + K V+       G   +D  CG+G ++   +K+ G    V  +D+SENML+  
Sbjct: 31  FEQHKVWRKRVMKDMGVRKGTKALDVCCGTGDWTIALSKAVGPTGEVTGIDFSENMLE-- 88

Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
              V +E     EN  LV  D   LPF  +S D V  G  +         + E++RVL+P
Sbjct: 89  ---VGKEKTASMENVKLVHGDAMELPFEDNSFDYVTIGFGLRNVPDYLVALKEMNRVLKP 145

Query: 278 GGVFV 282
           GG+ V
Sbjct: 146 GGMVV 150

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Staphylococcus aureus (strain N315) (taxid: 158879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
225459328	350	PREDICTED: uncharacterized methyltransfe	0.828	0.857	0.667	1e-112
224066941	293	predicted protein [Populus trichocarpa]	0.682	0.843	0.748	1e-110
388517893	352	unknown [Lotus japonicus]	0.745	0.767	0.697	1e-109
356508108	352	PREDICTED: uncharacterized methyltransfe	0.756	0.778	0.680	1e-109
255545696	351	S-adenosylmethionine-dependent methyltra	0.817	0.843	0.629	1e-105
297842589	352	predicted protein [Arabidopsis lyrata su	0.676	0.696	0.693	5e-98
18411840	355	S-adenosyl-L-methionine-dependent methyl	0.649	0.661	0.704	1e-96
449437246	313	PREDICTED: uncharacterized methyltransfe	0.657	0.760	0.654	5e-90
449502868	376	PREDICTED: uncharacterized methyltransfe	0.657	0.632	0.654	9e-90
224082138	244	predicted protein [Populus trichocarpa]	0.527	0.782	0.786	1e-85

>gi|225459328|ref|XP_002285799.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Vitis vinifera] gi|302141946|emb|CBI19149.3| unnamed protein product [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/307 (66%), Positives = 240/307 (78%), Gaps = 7/307 (2%)

Query: 1   MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST---AFVETKPS 56
           MA +++   F +V +PG+LG  R    KP  SP  +   F AK+RASST     VETKP 
Sbjct: 1   MARVIAK--FPTVFVPGQLGQPRDPFFKPLFSPPTVNFVFAAKLRASSTPAAVVVETKP- 57

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE E S  K++LACPICY+P TW GD  LS+ES  GSS  C++CKK   G  TH D
Sbjct: 58  DPISVEKEISIGKSILACPICYQPFTWNGDLGLSVESMPGSSFHCSSCKKACFGNETHLD 117

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T A+G+K+Y E M  ATE FR P +SF+YERGWRQNF+WGGFPG EKEFEL KGYLKPV
Sbjct: 118 LTVATGAKEYDESMPAATEIFRTPLISFLYERGWRQNFIWGGFPGLEKEFELAKGYLKPV 177

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           LGG I+DASCGSGLFSR FAKSGLFSLVVALD+SENML+QCYEF++QE  FPKEN LLVR
Sbjct: 178 LGGTIVDASCGSGLFSRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVR 237

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296
           ADISRLPFASSS+DAVHAGAA+HCW SPS  VAEISRVLRPGGVFV TTY++DGPF+++P
Sbjct: 238 ADISRLPFASSSVDAVHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLLDGPFSVLP 297

Query: 297 FSRLLRQ 303
           F + LRQ
Sbjct: 298 FLKTLRQ 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066941|ref|XP_002302290.1| predicted protein [Populus trichocarpa] gi|222844016|gb|EEE81563.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 185/247 (74%), Positives = 214/247 (86%)

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE + S+SKN+LACP+CY+P+T IG + LS++SA GSSLQC+TCKKTYSG  TH +
Sbjct: 1   DPVVVEKDVSSSKNILACPVCYEPVTLIGANVLSVDSARGSSLQCSTCKKTYSGKETHLE 60

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T ASGSK Y + M  ATEFFR PF+SF+YERGWRQNFVWGGFPGPE EFE+MK YLKPV
Sbjct: 61  LTVASGSKAYDDAMPMATEFFRTPFISFLYERGWRQNFVWGGFPGPEMEFEMMKDYLKPV 120

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           LGGNI+DASCGSGLFSR+FAKSGLFSLV ALDYSENMLKQCYEF++QE NFPKEN +LVR
Sbjct: 121 LGGNILDASCGSGLFSRLFAKSGLFSLVTALDYSENMLKQCYEFIKQEENFPKENLILVR 180

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296
           ADI+RLPF S S+DAVHAGAAIHCW SPS  VAE+SRVLRPGGVFV TTYI+DGPF+ IP
Sbjct: 181 ADIARLPFVSGSLDAVHAGAAIHCWPSPSAAVAEVSRVLRPGGVFVATTYILDGPFSFIP 240

Query: 297 FSRLLRQ 303
           F + + Q
Sbjct: 241 FLKPISQ 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517893|gb|AFK47008.1| unknown [Lotus japonicus]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/274 (69%), Positives = 224/274 (81%), Gaps = 4/274 (1%)

Query: 34  IFIRKFVAKIRASSTA--FVETKPSEPSFVEN-EASTSKNVLACPICYKPLTWIGDSSLS 90
           +F  KF  ++RA STA   V+ KP++   V++ E   S N LACP+C+  LTW GDS LS
Sbjct: 33  VFPSKFPLQLRAFSTASPIVDPKPTDSIVVDDKEVRRSSNSLACPVCFDSLTWTGDSGLS 92

Query: 91  IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
           ++S   SSLQC+TC+KTY G  TH D+TA SG+K+YG+LM  +TE FR+P +SF+YERGW
Sbjct: 93  VDSIPVSSLQCSTCQKTYVGNQTHLDLTATSGAKNYGDLMPASTELFRVPLISFLYERGW 152

Query: 151 RQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
           RQ F VWGGFPGPEKEFELMKG+L PVLGGNIIDASC SGLFSR+FAKSGLFSLVVALDY
Sbjct: 153 RQTFSVWGGFPGPEKEFELMKGFLNPVLGGNIIDASCASGLFSRLFAKSGLFSLVVALDY 212

Query: 210 SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA 269
           SENML QCYEF+QQE NFPKENF+LVRADI+RLPF +SS+DAVHAGAA+HCW SPS  VA
Sbjct: 213 SENMLAQCYEFIQQEDNFPKENFILVRADIARLPFVTSSVDAVHAGAALHCWPSPSAVVA 272

Query: 270 EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 303
           EISRVLRPGGVFV TTYI+DGPF  +PF   +RQ
Sbjct: 273 EISRVLRPGGVFVATTYILDGPFTFVPFLSTVRQ 306

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508108|ref|XP_003522802.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/285 (68%), Positives = 228/285 (80%), Gaps = 11/285 (3%)

Query: 30  NPSPIFIRK-FVAKI----RASSTAFV--ETKPSEPSFV---ENEASTSKNVLACPICYK 79
           +P+ +F R  F AK+    RASST+F+  ET P E + V   ++ +S S N LACP+CY 
Sbjct: 22  HPTRLFSRAAFTAKLPLQFRASSTSFIDTETNPRESNVVVVEKDVSSRSSNSLACPVCYD 81

Query: 80  PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRM 139
            LTW GD   S+++  GSS QC+TC+KTY G  TH D+TA  G+K YGE M  +TE FR+
Sbjct: 82  SLTWNGDPGFSVDTITGSSFQCSTCQKTYIGNQTHLDLTATGGAKSYGESMPASTELFRV 141

Query: 140 PFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS 198
           P +SF+YERGWRQ F VWGGFPGPEKEFELMKG+LKP+LGGNIIDASC SGLFSR+FAKS
Sbjct: 142 PLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKPILGGNIIDASCASGLFSRLFAKS 201

Query: 199 GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI 258
           GLFS +VALDYSENML+QCYEF+QQE NFPKENF+LVRADISRLPF SSS+DAVHAGAA+
Sbjct: 202 GLFSFIVALDYSENMLQQCYEFIQQEENFPKENFILVRADISRLPFVSSSVDAVHAGAAL 261

Query: 259 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 303
           HCW SP   VAEISRVLRPGGVFV TTYI+DGPF++IPF   LRQ
Sbjct: 262 HCWPSPLAAVAEISRVLRPGGVFVATTYILDGPFSVIPFLSSLRQ 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545696|ref|XP_002513908.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546994|gb|EEF48491.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/305 (62%), Positives = 234/305 (76%), Gaps = 9/305 (2%)

Query: 7   SSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST-----AFVETKPSEPSF 60
           +++  S  LP + GNSR+    P   PIF R  F AK+RASS+     A +E+KP++   
Sbjct: 2   AAATISYYLPNQFGNSRQFLFNPYTRPIFKRSNFAAKVRASSSTSTSTALLESKPADAVV 61

Query: 61  VENE--ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMT 118
           VE E  + +S N++ACPICY+PL+ IGD  LS++     SL+C +CKK Y G  TH ++T
Sbjct: 62  VEKEEVSRSSTNIIACPICYEPLSLIGDRLLSVD-IGECSLRCGSCKKIYYGKETHIELT 120

Query: 119 AASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLG 178
            ASG+  Y + M  ATEFFR+  +SF+YERGWRQNF+WGGFPGPEKEFEL+K YLKPVLG
Sbjct: 121 VASGASKYDDAMPLATEFFRLSLISFLYERGWRQNFIWGGFPGPEKEFELIKDYLKPVLG 180

Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238
           GNIIDASCGSGLFSR+FAKSGLFSLVVALDYSENML+QCY+F++QE NFP EN + VRAD
Sbjct: 181 GNIIDASCGSGLFSRLFAKSGLFSLVVALDYSENMLQQCYDFIKQEENFPTENLISVRAD 240

Query: 239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298
           ISRLPF   S+DAVHAGAAIHCW SPS  VAEISRVLRPGGVFV +T+I+DGPF+ +P  
Sbjct: 241 ISRLPFLFGSVDAVHAGAAIHCWPSPSAAVAEISRVLRPGGVFVASTFILDGPFSFVPLM 300

Query: 299 RLLRQ 303
             LRQ
Sbjct: 301 GPLRQ 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842589|ref|XP_002889176.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335017|gb|EFH65435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  363 bits (933), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 172/248 (69%), Positives = 200/248 (80%), Gaps = 3/248 (1%)

Query: 59  SFVENEAST-SKNVLACPICYKPLTWIGDSSLSIESA-AGSSLQCNTCKKTYSGVGTHFD 116
           S +E E +   K VLACPICY  L WI   +  IESA +G+ LQCNTCK++YSG  TH D
Sbjct: 59  SVIEKEKTRGEKKVLACPICYNSLAWISQPNGLIESATSGTQLQCNTCKRSYSGNETHLD 118

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 119 LAVASGSKTYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKDYLKPV 178

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLV 235
           LGGNIIDASCGSG+FSR+FA+S LFSLV+ALDYSENML+QCYE + QE NFP +E  +LV
Sbjct: 179 LGGNIIDASCGSGMFSRLFARSELFSLVIALDYSENMLRQCYELLNQEENFPNREKLVLV 238

Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 295
           RADI+RLPF S S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ I
Sbjct: 239 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFI 298

Query: 296 PFSRLLRQ 303
           PF + LRQ
Sbjct: 299 PFLKNLRQ 306

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411840|ref|NP_565170.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75329938|sp|Q8LBV4.1|Y1814_ARATH RecName: Full=Uncharacterized methyltransferase At1g78140, chloroplastic; Flags: Precursor gi|21592590|gb|AAM64539.1| unknown [Arabidopsis thaliana] gi|28393453|gb|AAO42148.1| unknown protein [Arabidopsis thaliana] gi|28827348|gb|AAO50518.1| unknown protein [Arabidopsis thaliana] gi|332197950|gb|AEE36071.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 167/237 (70%), Positives = 193/237 (81%), Gaps = 2/237 (0%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFAS 246
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP KE  +LVRADI+RLPF S
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252

Query: 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 303
            S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQ 309

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437246|ref|XP_004136403.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 157/240 (65%), Positives = 193/240 (80%), Gaps = 2/240 (0%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 26  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 85

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 86  GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 144

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E  +L+RADI+
Sbjct: 145 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 204

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
           RLPFASSS+DAVHAGAA+HCW SPS  VAEISR+LRPGGVFV +T+I+DGP++ +PF R+
Sbjct: 205 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIMDGPYSFVPFLRI 264

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502868|ref|XP_004161765.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  336 bits (862), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 157/240 (65%), Positives = 193/240 (80%), Gaps = 2/240 (0%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 89  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 148

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 149 GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 207

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP E  +L+RADI+
Sbjct: 208 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 267

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
           RLPFASSS+DAVHAGAA+HCW SPS  VAEISR+LRPGGVFV +T+I+DGP++ +PF R+
Sbjct: 268 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIMDGPYSFVPFLRI 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082138|ref|XP_002306578.1| predicted protein [Populus trichocarpa] gi|222856027|gb|EEE93574.1| predicted protein [Populus trichocarpa]

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 151/192 (78%), Positives = 170/192 (88%), Gaps = 1/192 (0%)

Query: 113 THFDMTAASGSKDYGELMSP-ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKG 171
           TH ++T ASGSK YG++  P ATEFFR PFMSF+YERGWRQNFVWGGFPGPEKEFELMK 
Sbjct: 7   THLELTVASGSKGYGDIAMPLATEFFRTPFMSFLYERGWRQNFVWGGFPGPEKEFELMKD 66

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
           YLKPVLGGNI+DASCGSGLFSR+F KSGLFSLV+ALDYSENML+QCYEF++QE NFPKEN
Sbjct: 67  YLKPVLGGNILDASCGSGLFSRLFTKSGLFSLVMALDYSENMLQQCYEFIKQEENFPKEN 126

Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 291
            +LVRADI+RLPF S S+DAV AGAAIHCW SPS  VAE+SRVLRPGGVFV TTYI+DG 
Sbjct: 127 LILVRADIARLPFISGSLDAVPAGAAIHCWPSPSVAVAEVSRVLRPGGVFVATTYILDGH 186

Query: 292 FNLIPFSRLLRQ 303
           F+LIPF + + Q
Sbjct: 187 FSLIPFLKPISQ 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.732	0.746	0.630	1.2e-88
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.698	0.718	0.486	3.3e-63
DICTYBASE|DDB_G0290001	284	DDB_G0290001 [Dictyostelium di	0.367	0.468	0.266	6.8e-08
TIGR_CMR|CPS_2596	265	CPS_2596 "biotin biosynthesis	0.273	0.373	0.315	1.6e-07
TIGR_CMR|BA_2890	258	BA_2890 "methyltransferase, Ub	0.317	0.445	0.278	2.5e-07
UNIPROTKB|G5EGY9	380	MGCH7_ch7g116 "Sterol 24-C-met	0.361	0.344	0.326	3.4e-06
DICTYBASE|DDB_G0289999	380	DDB_G0289999 [Dictyostelium di	0.273	0.260	0.303	4.3e-06
POMBASE|SPBC16E9.05	378	erg6 "sterol 24-C-methyltransf	0.356	0.341	0.315	5.5e-06
TIGR_CMR|BA_1462	258	BA_1462 "methyltransferase, Ub	0.301	0.422	0.310	6.4e-06
ASPGD|ASPL0000068274	377	AN7146 [Emericella nidulans (t	0.422	0.405	0.303	7.2e-06

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
 Identities = 172/273 (63%), Positives = 202/273 (73%)

Query:    39 FVAK-IRASSTAF-VETKP-SEPSFV---ENEASTSKNVLACPICYKPLTWIGD-XXXXX 91
             FV++   ASS +  VET   S   FV   +++    K +LACPICY  L WI        
Sbjct:    37 FVSRSAHASSASVSVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIE 96

Query:    92 XXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWR 151
                     QCNTCK++YSG  TH D+  ASGSK Y E M  +TE FR P +SF+YERGWR
Sbjct:    97 SAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWR 156

Query:   152 QNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
             QNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSE
Sbjct:   157 QNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSE 216

Query:   212 NMLKQCYEFVQQESNFP-KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270
             NML+QCYE + +E NFP KE  +LVRADI+RLPF S S+DAVHAGAA+HCW SPS+ VAE
Sbjct:   217 NMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAE 276

Query:   271 ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ 303
             ISRVLRPGGVFV TT+I DGPF+ IPF + LRQ
Sbjct:   277 ISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQ 309

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 127/261 (48%), Positives = 168/261 (64%)

Query:    71 VLACPICYKPLTWIGDXXXXXXXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELM 130
             V ACP+CY+PL   G              +C  C KTYS    + D+T  +   DY E+ 
Sbjct:    78 VFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVK 137

Query:   131 SPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGL 190
                TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSGL
Sbjct:   138 PITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGL 197

Query:   191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLPFASSSI 249
             FSR FA+SG +S V+ALDYSENML+QC EF++ ++ F    N  +VRAD+SRLPF S S+
Sbjct:   198 FSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGSV 257

Query:   250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI---VDGPFNLIPF-SRLLRQVC 305
             DAVHAGAA+HCW SP+  +AEI RVLR GGVFVGTT++      P+ + PF SR+L+   
Sbjct:   258 DAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPSTPWIIRPFQSRILQSYN 317

Query:   306 FL---DLKIVGFSIPVLGFDD 323
             +L   ++K V  S  +  ++D
Sbjct:   318 YLMQDEIKDVCTSCGLTDYED 338

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

DICTYBASE|DDB_G0290001 DDB_G0290001 [Dictyostelium discoideum (taxid:44689)]

 Score = 147 (56.8 bits), Expect = 6.8e-08, P = 6.8e-08
 Identities = 36/135 (26%), Positives = 69/135 (51%)

Query:   146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
             +++    N+V G    P +  +++K  L   +   I+D +CG+G FS++  ++  F  VV
Sbjct:    15 HDKDVSSNYVKGRPSYPIEAIKMLKEDLGLTIDSKIMDLACGTGKFSKMICEAD-FKNVV 73

Query:   206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265
              ++ S      C   +++  +   ++  +V    + LPF +S+ D + A  + H W    
Sbjct:    74 CVEPSPEFRVDCSYVLKEFIDDKNKDIQVVNGLATSLPFENSTFDCICAAQSFH-WYDNV 132

Query:   266 TGVAEISRVLRPGGV 280
               + EI+RVL+PGGV
Sbjct:   133 DAIKEITRVLKPGGV 147

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

TIGR_CMR|CPS_2596 CPS_2596 "biotin biosynthesis protein bioC" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 143 (55.4 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 35/111 (31%), Positives = 60/111 (54%)

Query:   181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
             ++D   G+G F+ + A +  ++ V+ LD S  ML     F ++  N   +  L + AD  
Sbjct:    51 VLDLGSGTGFFTDLLAST--YNQVIGLDISNEML----HFAKEHRN---KKILWLEADAH 101

Query:   241 RLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDG 290
             +LP   +SID +++   I  W  P    + E+ R+L+PGG+ + TT +VDG
Sbjct:   102 KLPLQDNSIDFIYSNLVIQ-WFDPLDEAITEMLRILKPGGLLIFTT-LVDG 150

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009102 "biotin biosynthetic process" evidence=ISS

TIGR_CMR|BA_2890 BA_2890 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 141 (54.7 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 34/122 (27%), Positives = 63/122 (51%)

Query:   161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
             GP+ ++ + +  ++      ++D + G G  + + A   LF  VVALD +E ML+   +F
Sbjct:    27 GPDLQYVVQQ--VESRHNNRLLDIATGGGHVANVLAP--LFKEVVALDLTEKMLENAKKF 82

Query:   221 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGV 280
             +    +   EN   V  +   LPF+ SS D +    A H +++P+  + E++R L   G+
Sbjct:    83 IISNGH---ENVSFVAGNAESLPFSDSSFDTITCRIAAHHFTNPAQFIYEVNRTLEDNGL 139

Query:   281 FV 282
             F+
Sbjct:   140 FI 141

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 135 (52.6 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 48/147 (32%), Positives = 75/147 (51%)

Query:   145 IYERGWRQNFVWGGFPGPEKEFELM---KGYLKPVLG---G-NIIDASCGSGLFSRIFAK 197
             IYE GW Q+F +  F   E  ++ +   + YL   +G   G  ++D  CG G  +R  AK
Sbjct:    90 IYEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQIGIKEGMTVLDVGCGVGGPAREIAK 149

Query:   198 -SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-G 255
              +G    VV L+ ++  + +   + +QE    +  F  V+ D  ++ F   S DAV+A  
Sbjct:   150 FTGCN--VVGLNNNDYQIDRATHYAKQEKLDSQLQF--VKGDFMQMSFPDESFDAVYAIE 205

Query:   256 AAIHCWSSPSTGV-AEISRVLRPGGVF 281
             A +H  +    GV +EI RVL+PGG F
Sbjct:   206 ATVH--APKLEGVYSEIFRVLKPGGTF 230

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0289999 DDB_G0289999 [Dictyostelium discoideum (taxid:44689)]

 Score = 134 (52.2 bits), Expect = 4.3e-06, P = 4.3e-06
 Identities = 31/102 (30%), Positives = 52/102 (50%)

Query:   181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRAD 238
             I+D + G G F+++ A  G F+ +  ++ S +  K+C   + Q    N    NF ++   
Sbjct:    50 IVDLASGPGKFTKVLAIEGGFNNITCIEPSGDFRKECENILNQVKLENNNSLNFKVLEGL 109

Query:   239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGV 280
              + +P   +S+D +    A H W S    V E+SRVL+P GV
Sbjct:   110 STSIPLPDNSVDCITVATAWH-WFSNIESVREVSRVLKPNGV 150

GO:0032259 "methylation" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

POMBASE|SPBC16E9.05 erg6 "sterol 24-C-methyltransferase Erg6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 133 (51.9 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 47/149 (31%), Positives = 73/149 (48%)

Query:   145 IYERGWRQNFVWGGFPGPEK------EFELMKGY---LKPVLGGNIIDASCGSGLFSRIF 195
             +YE GW Q+F +  F   E         E    Y   +KP  G  ++D  CG G  +R  
Sbjct:    85 LYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLAYRMGIKP--GSRVLDVGCGVGGPAREI 142

Query:   196 AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA- 254
              +    +LV  L+ ++  + +C  +  +  N  K+  + V+ D   +PF  ++ D V+A 
Sbjct:   143 TEFTGCNLV-GLNNNDYQISRCNNYAVKR-NLDKKQ-VFVKGDFMHMPFEDNTFDYVYAI 199

Query:   255 GAAIHCWSSPST-GV-AEISRVLRPGGVF 281
              A +H   +PS  GV  EI RVL+PGGVF
Sbjct:   200 EATVH---APSLEGVYGEIFRVLKPGGVF 225

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0006696 "ergosterol biosynthetic process" evidence=ISO;IMP

GO:0071210 "protein insertion into membrane raft" evidence=IMP

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=IMP

GO:0006897 "endocytosis" evidence=IMP

TIGR_CMR|BA_1462 BA_1462 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 129 (50.5 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 36/116 (31%), Positives = 57/116 (49%)

Query:   167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             E++KG +  +    IID  CG G++++  A  G  S VV LD+S+ +L+   E     S 
Sbjct:    25 EMIKG-ITNIQNKQIIDIGCGGGIYTKELALMGAKS-VVGLDFSKEILQAAKENC---SG 79

Query:   227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
             F   N   +  D    P+ + + D V + A IH      T + E SR+L+  GV +
Sbjct:    80 F--SNISFIHGDAHSTPYPNDTFDIVISRAVIHHLQDIPTFLREASRILKKNGVLI 133

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

ASPGD|ASPL0000068274 AN7146 [Emericella nidulans (taxid:162425)]

 Score = 132 (51.5 bits), Expect = 7.2e-06, P = 7.2e-06
 Identities = 51/168 (30%), Positives = 82/168 (48%)

Query:   145 IYERGWRQNFVWGGFPGPEKEFELM---KGYLKPVLG---G-NIIDASCGSGLFSRIFAK 197
             +YE GW  +F +  F   E  ++ +   + YL   +G   G  ++D  CG G  +R   K
Sbjct:    88 LYEYGWGTSFHFCRFAYGEPFYQAIARHEHYLAHQMGIKPGMKVLDVGCGVGGPAREIVK 147

Query:   198 SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-GA 256
                 + V  L+ ++  +++   + ++E    K NF  V+ D  ++ F  +S DAV+A  A
Sbjct:   148 F-TDAHVTGLNNNDYQIQRATRYAEREGLSHKLNF--VKGDFMQMQFPDNSFDAVYAIEA 204

Query:   257 AIHCWSSPSTGV-AEISRVLRPGGVF-VGTTYIVDGPFNLIPFSRLLR 302
              +H  +    GV  EI RVL+PGGVF V    + D   N  P  R +R
Sbjct:   205 TVH--APELAGVYKEIMRVLKPGGVFGVYEWLMTDAYDNDNPEHRKIR 250

GO:0016125 "sterol metabolic process" evidence=RCA

GO:0003838 "sterol 24-C-methyltransferase activity" evidence=IEA;RCA

GO:0005634 "nucleus" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0090002 "establishment of protein localization to plasma membrane" evidence=IEA

GO:0071210 "protein insertion into membrane raft" evidence=IEA

GO:0006696 "ergosterol biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBV4	Y1814_ARATH	2, ., 1, ., 1, ., -	0.7046	0.6491	0.6619	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-22
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	3e-17
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	2e-16
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	2e-14
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	3e-12
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	5e-12
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	8e-12
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	8e-12
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	1e-11
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	2e-11
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	5e-11
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	4e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	8e-10
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	1e-08
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	5e-07
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	1e-06
PLN02233	261	PLN02233, PLN02233, ubiquinone biosynthesis methyl	2e-05
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	8e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-04
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	6e-04
TIGR00452	314	TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer	0.002
pfam03966	47	pfam03966, Trm112p, Trm112p-like protein	0.002

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 10/101 (9%)

Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241
           +D  CG+GL +   A+ G  + V  +D S  ML    +         +     V  D   
Sbjct: 1   LDVGCGTGLLAEALARRG-GARVTGVDLSPEMLALARK---------RAPRKFVVGDAED 50

Query: 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
           LPF   S D V +   +H    P   + EI+RVL+PGG  V
Sbjct: 51  LPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 79.6 bits (197), Expect = 3e-17
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 12/132 (9%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           ++D  CG+G  +R   K    +  +A D S  ML Q      +        F+    D  
Sbjct: 38  VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQA-----KTKLSENVQFIC--GDAE 90

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
           +LP   SS D + +  A+      S  ++E++RVL+PGG+   +T+   GP  L    + 
Sbjct: 91  KLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF---GPGTLHELRQS 147

Query: 301 LRQV--CFLDLK 310
             Q    +L L 
Sbjct: 148 FGQHGLRYLSLD 159

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
             MSF   R WR+  +            L+   +KP  G  ++D +CG+G  + + AKS 
Sbjct: 29  DLMSFGLHRLWRRALI-----------SLLG--IKP--GDKVLDVACGTGDMALLLAKSV 73

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
               VV LD SE+ML+      ++      +N   V  D   LPF  +S DAV     + 
Sbjct: 74  GTGEVVGLDISESMLEVA---REKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLR 130

Query: 260 CWSSPSTGVAEISRVLRPGGVFV 282
             +     + E+ RVL+PGG  +
Sbjct: 131 NVTDIDKALKEMYRVLKPGGRLL 153

Length = 238

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 39/103 (37%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G  ++D  CG G  +R  A+  G    VV +D SE ML    E  +     P   F  VR
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKE--RAAGLGPNVEF--VR 75

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
            D   LPF   S DAV +   +     P+  +AEI+RVLRPGG
Sbjct: 76  GDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118

Length = 241

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 65.6 bits (161), Expect = 3e-12
 Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 24/145 (16%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGL 200
           +SF   R WR+  +                +L    G  ++D +CG+G  +   AK  G 
Sbjct: 31  LSFGLHRVWRRKTI---------------KWLGVRPGDKVLDLACGTGDLAIALAKAVGK 75

Query: 201 FSLVVALDYSENMLKQCYEFVQQE---SNFPKENFLLVRADISRLPFASSSIDAVHAGAA 257
              VV LD+SE ML      V +E         N   V+ D   LPF  +S DAV     
Sbjct: 76  TGEVVGLDFSEGMLA-----VGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130

Query: 258 IHCWSSPSTGVAEISRVLRPGGVFV 282
           +         + E+ RVL+PGG  V
Sbjct: 131 LRNVPDIDKALREMYRVLKPGGRLV 155

Length = 239

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 21/143 (14%)

Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL 200
            +SF   R WR+  V                 +    G  ++D +CG+G  +   AKS  
Sbjct: 18  LLSFGLHRLWRRRAV---------------KLIGVFKGQKVLDVACGTGDLAIELAKSAP 62

Query: 201 FSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
               V  +D+S  ML+     V ++ +    N   ++AD   LPF  +S DAV     + 
Sbjct: 63  DRGKVTGVDFSSEMLE-----VAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117

Query: 260 CWSSPSTGVAEISRVLRPGGVFV 282
             +     + E+ RVL+PGG  V
Sbjct: 118 NVTDIQKALREMYRVLKPGGRLV 140

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 36/102 (35%), Positives = 49/102 (48%), Gaps = 8/102 (7%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           I+D  CG+G   R  A++G  S V  +D S+  L+   E +      PK  F  V AD  
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERL--RDKGPKVRF--VVADAR 55

Query: 241 RLPFASSSIDAVH-AGAAIHCWSSPS--TGVAEISRVLRPGG 279
            LPF   S D V  AG ++   S       + E +R+LRPGG
Sbjct: 56  DLPFEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 62.1 bits (151), Expect = 8e-12
 Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 178 GGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G  ++D  CG+G  + I A K G  + VV +D SE  +++  +   ++  +    F+   
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKA-KENAKKLGYENVEFIQGD 62

Query: 237 A-DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 295
             ++ +L    +S D V +   ++    P   + EI RVL+PGGV      IV  P  L 
Sbjct: 63  IEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVL-----IVSDPVLLS 117

Query: 296 PFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQ 330
               LL  +  L   ++  +I   G   L  I R+
Sbjct: 118 ELPALLEDLERLYAGVLEGAI---GKKKLLTILRE 149

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 2/100 (2%)

Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR 241
           +D  CG+G   R   ++        +D S   L+   E +            L   D   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281
           L   S   D V A   +H  + P   +  + R+L+PGGV 
Sbjct: 61  LDPGS--FDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS 240
           ++DA CG G  SR + + G  S V ALD S  ML Q  +  +  +    +++L    DI 
Sbjct: 46  VLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQ--KDAA----DHYLA--GDIE 95

Query: 241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285
            LP A+++ D   +  A+    + ST + E+ RV+RPGGV   TT
Sbjct: 96  SLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140

Length = 251

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 62.2 bits (148), Expect = 5e-11
 Identities = 46/234 (19%), Positives = 79/234 (33%), Gaps = 6/234 (2%)

Query: 129 LMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGS 188
               + E        +         F+       +    L    L P   G ++D  CG+
Sbjct: 1   DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLG-VLDIGCGT 59

Query: 189 GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRLPFAS 246
           G  + +    G  + VV +D S  ML        +           V AD     LPF  
Sbjct: 60  GRLALLARLGGRGAYVVGVDLSPEMLAL---ARARAEGAGLGLVDFVVADALGGVLPFED 116

Query: 247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF 306
           S+   +     +     P+  + E+ RVL+PGG  V +  + DG       + L      
Sbjct: 117 SASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALLGFGDPV 176

Query: 307 LDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPSLCNLLNY 360
           L+   +   +  L   +L  +     L+  L+L  G +   + ++  L  LL  
Sbjct: 177 LERGDILLELEALLRLELLDLEELLGLLGELELERGGLARLLEELRLLLELLAL 230

Length = 257

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 56.3 bits (136), Expect = 4e-10
 Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 6/111 (5%)

Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239
            ++D  CG+G  +   A       V  +D S   L+      +  +    +N  +++ D 
Sbjct: 1   RVLDLGCGTGALALALASGPGAR-VTGVDISPVALELA---RKAAAALLADNVEVLKGDA 56

Query: 240 SRLPF-ASSSIDAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIV 288
             LP  A  S D + +   +H      +  + E  R+L+PGGV V T  + 
Sbjct: 57  EELPPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVLA 107

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 55.0 bits (133), Expect = 8e-10
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK---ENFLL 234
           G  ++D  CG+G  +   A+    + V  +D S  ML+          N           
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELA------RENAKLALGPRITF 55

Query: 235 VRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
           V+ D           DAV  G            +  ++ +L+PGG  V
Sbjct: 56  VQGDAPDALDLLEGFDAVFIGGGGGDLLEL---LDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 54.8 bits (132), Expect = 1e-08
 Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G   +D + G+G ++   + S G    VV LD +ENMLK+  +  ++E    K N   ++
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEG---KYNIEFLQ 104

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
            +   LPF   S D V     +  +      + E  RVL+PGG  V
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150

Length = 233

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 19/114 (16%)

Query: 167 ELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
           EL+K  LK    P     ++D + G G  S  F K   +  VVALDY+ENMLK     V 
Sbjct: 40  ELVKTILKYCGRPKK---VLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK--MNLVA 93

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLR 276
            +          V      LPF   S D V +  A+H   +    +AE +RV R
Sbjct: 94  DDK---------VVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138

Length = 226

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR 236
           G + +D  CG+  +S   A++ G    V+ LD+SENML    + V+        N  LV 
Sbjct: 46  GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAG---LHNVELVH 102

Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
            +   LPF  +S D V  G  +         + E+ RV++PGG  V
Sbjct: 103 GNAMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235
           +G  ++D  CGSG  + + + K G    V+ LD+S   L       + ++    +N   +
Sbjct: 73  MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWI 132

Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 278
             D + LPF     DA+  G  +         + E+ RVL+PG
Sbjct: 133 EGDATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175

Length = 261

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 42.1 bits (99), Expect = 8e-05
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 35/162 (21%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
           GG ++D  CG+G+  R+  + G    V  +D S   +     F   +       +     
Sbjct: 23  GGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVLAGKY----- 75

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
                       D + A   +     P   + ++  +L+PGGV + +T + D    L   
Sbjct: 76  ------------DLITAFEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDARLFAN 123

Query: 298 SRLLRQ----VCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVV 335
              LR     + F               + LKR+  +    +
Sbjct: 124 WHYLRPRNTHISFYSE------------ESLKRLLEKAGFEL 153

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 11/114 (9%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
           G  ++D   GSG F    A++G  + VV ++            +      P     +V  
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAP--RVRVVVG 58

Query: 238 DISRLP-FASSSIDAV--------HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
           D   L      S D V         AG            +A   R+L+PGGV V
Sbjct: 59  DARELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 214
            P+ G  ++DA CG+GL S   AK G  ++V A+D SE M+
Sbjct: 52  DPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMV 90

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 43/177 (24%), Positives = 71/177 (40%), Gaps = 26/177 (14%)

Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
           WR +  W          + +  +L P+ G  I+D  CGSG         G    +V +D 
Sbjct: 104 WRSDIKW----------DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDP 152

Query: 210 SENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA 269
           +   L Q +E V++  +  K   L     I +L     + D V +   ++   SP   + 
Sbjct: 153 TVLFLCQ-FEAVRKLLDNDKRAILEPLG-IEQLH-ELYAFDTVFSMGVLYHRKSPLEHLK 209

Query: 270 EISRVLRPGGVFVGTTYIVDGPFN--LIPFSRL--LRQVCFLD--------LKIVGF 314
           ++   L   G  V  T ++DG  N  L+P  R   ++ V F+         L+ VGF
Sbjct: 210 QLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGF 266

This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314

>gnl|CDD|217819 pfam03966, Trm112p, Trm112p-like protein

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108
            +LACP+C  PL  +  +           L C  C   Y
Sbjct: 6   EILACPLCKGPLALVEVAGH--YDIEEGELVCPECGLAY 42

The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.95
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.95
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.92
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.92
PLN02244	340	tocopherol O-methyltransferase	99.9
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.89
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.88
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.87
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.86
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.86
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.85
PRK05785	226	hypothetical protein; Provisional	99.85
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.85
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.85
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.85
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.84
PLN02336	475	phosphoethanolamine N-methyltransferase	99.83
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.83
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.82
PRK08317	241	hypothetical protein; Provisional	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.81
PLN02490	340	MPBQ/MSBQ methyltransferase	99.81
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.81
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.81
KOG4300	252	consensus Predicted methyltransferase [General fun	99.8
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.8
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.79
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.79
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.79
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.78
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.78
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.77
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.77
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.77
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.76
PRK11207	197	tellurite resistance protein TehB; Provisional	99.76
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.76
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.75
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.74
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.73
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.73
PRK06202	232	hypothetical protein; Provisional	99.72
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.71
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.71
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.7
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.69
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.68
PRK12335	287	tellurite resistance protein TehB; Provisional	99.68
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.68
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.67
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.67
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.67
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.67
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.66
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.65
PLN02336	475	phosphoethanolamine N-methyltransferase	99.64
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.64
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.64
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.62
PRK06922	677	hypothetical protein; Provisional	99.62
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.61
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.61
PRK04266	226	fibrillarin; Provisional	99.6
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.59
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.58
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.58
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.58
PRK14968	188	putative methyltransferase; Provisional	99.57
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.56
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.56
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.55
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.54
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.53
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.53
PLN03075	296	nicotianamine synthase; Provisional	99.53
KOG1271	227	consensus Methyltransferases [General function pre	99.53
PRK14967	223	putative methyltransferase; Provisional	99.52
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.52
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.51
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.5
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.5
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.5
TIGR03438	301	probable methyltransferase. This model represents	99.5
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.49
KOG2361	264	consensus Predicted methyltransferase [General fun	99.49
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.48
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.48
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.47
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.46
PTZ00146	293	fibrillarin; Provisional	99.46
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.46
PRK07402	196	precorrin-6B methylase; Provisional	99.46
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.45
PHA03411	279	putative methyltransferase; Provisional	99.45
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.45
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.44
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.44
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.43
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.43
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.43
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.42
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.41
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.41
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.4
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.37
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.37
COG4123	248	Predicted O-methyltransferase [General function pr	99.36
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.35
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.34
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.34
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.33
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.32
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.32
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.32
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.31
TIGR00438	188	rrmJ cell division protein FtsJ.	99.31
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.31
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.3
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.3
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.3
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.29
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.28
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.26
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.26
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.25
KOG3010	261	consensus Methyltransferase [General function pred	99.24
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.23
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.23
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.23
KOG2940	325	consensus Predicted methyltransferase [General fun	99.22
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	99.22
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.22
COG2890	280	HemK Methylase of polypeptide chain release factor	99.22
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.21
PRK04457	262	spermidine synthase; Provisional	99.21
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.19
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.19
PRK00811	283	spermidine synthase; Provisional	99.16
PLN02672	1082	methionine S-methyltransferase	99.14
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.11
PHA03412	241	putative methyltransferase; Provisional	99.11
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	99.11
PRK01581	374	speE spermidine synthase; Validated	99.11
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.08
PRK03612	521	spermidine synthase; Provisional	99.08
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.07
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.07
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	99.05
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.02
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.01
PLN02366	308	spermidine synthase	99.0
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.0
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.0
KOG2899	288	consensus Predicted methyltransferase [General fun	99.0
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.95
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.95
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.94
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.91
COG4122	219	Predicted O-methyltransferase [General function pr	98.9
COG2521	287	Predicted archaeal methyltransferase [General func	98.9
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.89
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.89
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.88
KOG2904	328	consensus Predicted methyltransferase [General fun	98.88
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.87
PLN02476	278	O-methyltransferase	98.86
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.85
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.84
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.82
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.82
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.81
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.8
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.8
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.8
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.78
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.78
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.77
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.77
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.75
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.72
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.72
KOG1331	293	consensus Predicted methyltransferase [General fun	98.68
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.67
PRK04148	134	hypothetical protein; Provisional	98.66
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.63
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.61
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.6
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.6
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.6
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.6
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.6
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.58
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.58
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.56
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.56
PLN02823	336	spermine synthase	98.56
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.53
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.52
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.49
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.47
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.46
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.45
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.44
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.43
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.43
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.42
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.41
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.39
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.38
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.37
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.34
PRK00536	262	speE spermidine synthase; Provisional	98.34
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.32
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.32
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.3
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.29
COG2520	341	Predicted methyltransferase [General function pred	98.28
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.28
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.25
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.22
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	98.22
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.18
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.16
COG2835	60	Uncharacterized conserved protein [Function unknow	98.16
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.14
COG4798	238	Predicted methyltransferase [General function pred	98.14
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.13
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.13
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.12
PRK11827	60	hypothetical protein; Provisional	98.09
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.09
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.07
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.03
KOG3115	249	consensus Methyltransferase-like protein [General	98.02
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.01
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.0
PF13679	141	Methyltransf_32: Methyltransferase domain	97.94
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	97.94
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.93
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.92
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.91
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.87
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.86
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.83
COG3897	218	Predicted methyltransferase [General function pred	97.83
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.78
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.77
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.73
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.72
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.64
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.64
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	97.6
COG4076	252	Predicted RNA methylase [General function predicti	97.53
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.51
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.51
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.48
PF03269	177	DUF268: Caenorhabditis protein of unknown function	97.4
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.28
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.2
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.17
KOG2730	263	consensus Methylase [General function prediction o	97.11
COG0286	489	HsdM Type I restriction-modification system methyl	97.08
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.98
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.94
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.92
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.9
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.78
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.76
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.69
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.68
PRK10742	250	putative methyltransferase; Provisional	96.66
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.6
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.58
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.56
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.55
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	96.54
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.52
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.48
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.33
COG1565	370	Uncharacterized conserved protein [Function unknow	96.17
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	96.13
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.05
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.95
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	95.8
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	95.77
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	95.77
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.64
PRK00420	112	hypothetical protein; Validated	95.62
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	95.45
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.43
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.42
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	95.4
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.38
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	95.37
PHA01634	156	hypothetical protein	95.24
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.08
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.88
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.81
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	94.69
COG3129	292	Predicted SAM-dependent methyltransferase [General	94.67
PRK11524	284	putative methyltransferase; Provisional	94.56
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	94.51
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	94.51
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.47
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	94.39
KOG1088	124	consensus Uncharacterized conserved protein [Funct	94.37
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	94.34
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.24
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	94.21
PRK13699	227	putative methylase; Provisional	94.2
PRK09678	72	DNA-binding transcriptional regulator; Provisional	94.19
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	94.07
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	94.06
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	94.03
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.02
KOG2671	421	consensus Putative RNA methylase [Replication, rec	93.98
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	93.95
KOG1501	636	consensus Arginine N-methyltransferase [General fu	93.91
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	93.81
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	93.77
KOG2920	282	consensus Predicted methyltransferase [General fun	93.73
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	93.63
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	93.34
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	93.31
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	93.25
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	93.17
PRK13699	227	putative methylase; Provisional	93.1
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	93.07
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	93.06
PHA00626	59	hypothetical protein	92.88
TIGR00497	501	hsdM type I restriction system adenine methylase (	92.84
COG1568	354	Predicted methyltransferases [General function pre	92.74
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	92.71
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.69
COG4301	321	Uncharacterized conserved protein [Function unknow	92.61
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	92.46
COG1198	730	PriA Primosomal protein N' (replication factor Y)	92.4
KOG1227	351	consensus Putative methyltransferase [General func	92.33
PTZ00357	1072	methyltransferase; Provisional	92.32
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	91.93
TIGR00595	505	priA primosomal protein N'. All proteins in this f	91.78
COG1656	165	Uncharacterized conserved protein [Function unknow	91.7
PRK00432	50	30S ribosomal protein S27ae; Validated	91.65
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.43
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.28
PRK05580	679	primosome assembly protein PriA; Validated	91.18
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.16
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.14
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.91
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	90.75
PRK14873	665	primosome assembly protein PriA; Provisional	90.67
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	90.62
PRK10220	111	hypothetical protein; Provisional	90.54
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	90.48
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	90.33
smart00661	52	RPOL9 RNA polymerase subunit 9.	90.01
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	89.91
PF11781	36	RRN7: RNA polymerase I-specific transcription init	89.74
KOG2352	482	consensus Predicted spermine/spermidine synthase [	89.66
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	89.52
PF02150	35	RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; I	89.41
COG2933	358	Predicted SAM-dependent methyltransferase [General	89.2
PF14353	128	CpXC: CpXC protein	88.99
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	88.96
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	88.95
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	88.89
KOG3924	419	consensus Putative protein methyltransferase invol	88.86
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	88.85
COG3677	129	Transposase and inactivated derivatives [DNA repli	88.81
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	88.72
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	88.65
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	88.46
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	88.33
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	88.23
PF04606	47	Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: I	87.87
PLN02740	381	Alcohol dehydrogenase-like	87.79
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	87.77
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	87.69
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	87.65
PF13248	26	zf-ribbon_3: zinc-ribbon domain	87.61
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	87.31
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	87.29
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	87.22
PRK11524	284	putative methyltransferase; Provisional	86.99
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	86.98
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	86.56
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	86.48
KOG2906	105	consensus RNA polymerase III subunit C11 [Transcri	85.97
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	85.77
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	85.69
PHA02768	55	hypothetical protein; Provisional	85.55
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.48
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	85.44
PRK06266	178	transcription initiation factor E subunit alpha; V	85.29
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	85.29
smart00531	147	TFIIE Transcription initiation factor IIE.	85.13
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	85.02
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	84.87
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	84.77
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	84.59
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	84.42
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	84.35
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.32
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	84.27
PLN02586	360	probable cinnamyl alcohol dehydrogenase	84.24
COG1327	156	Predicted transcriptional regulator, consists of a	84.0
PRK14892	99	putative transcription elongation factor Elf1; Pro	83.88
KOG2782	303	consensus Putative SAM dependent methyltransferase	83.74
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	83.73
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	83.59
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	83.05
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	82.98
PRK12495	226	hypothetical protein; Provisional	82.77
TIGR01384	104	TFS_arch transcription factor S, archaeal. There h	82.64
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	82.49
PLN02827	378	Alcohol dehydrogenase-like	82.45
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	82.36
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	82.28
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	82.18
TIGR00244	147	transcriptional regulator NrdR. Members of this al	82.1
COG1998	51	RPS31 Ribosomal protein S27AE [Translation, riboso	82.03
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	81.98
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	81.91
PRK07806	248	short chain dehydrogenase; Provisional	81.9
PF07282	69	OrfB_Zn_ribbon: Putative transposase DNA-binding d	81.86
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	81.77
COG4888	104	Uncharacterized Zn ribbon-containing protein [Gene	81.71
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	81.66
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	81.62
COG1571	421	Predicted DNA-binding protein containing a Zn-ribb	81.57
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	81.56
PF08996	188	zf-DNA_Pol: DNA Polymerase alpha zinc finger; Inte	81.47
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	81.15
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	80.99
PTZ00255	90	60S ribosomal protein L37a; Provisional	80.91
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	80.8
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	80.74
PRK10458	467	DNA cytosine methylase; Provisional	80.57
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	80.48
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	80.09

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.95  E-value=6e-27  Score=205.83  Aligned_cols=208  Identities=24%  Similarity=0.297  Sum_probs=159.6

Q ss_pred             ecCCCCCCcCCCCccchhcccCchhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHH
Q 018003          118 TAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK  197 (362)
Q Consensus       118 ~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~  197 (362)
                      .+...+..|+..         |+++|+..++.|++...               ..+...+|.+|||+|||||.++..+++
T Consensus        16 vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~~~~k   71 (238)
T COG2226          16 VFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMALLLAK   71 (238)
T ss_pred             HHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHHHHHH
Confidence            455566677765         78899999999998763               233334799999999999999999999


Q ss_pred             hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccC
Q 018003          198 SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP  277 (362)
Q Consensus       198 ~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp  277 (362)
                      ....++|+|+|+|+.|++.|+++....   ...+++++++|++.+||++++||+|++.++|++++|+.++|+|+.|+|||
T Consensus        72 ~~g~g~v~~~D~s~~ML~~a~~k~~~~---~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKp  148 (238)
T COG2226          72 SVGTGEVVGLDISESMLEVAREKLKKK---GVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKP  148 (238)
T ss_pred             hcCCceEEEEECCHHHHHHHHHHhhcc---CccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcC
Confidence            866789999999999999999998775   12349999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEEccCCCCcchhhhHHH-----HHhh-------hhccccc-ccccccCCHHHHHHHHHHCCCEEE--EEEEec
Q 018003          278 GGVFVGTTYIVDGPFNLIPFSRLL-----RQVC-------FLDLKIV-GFSIPVLGFDDLKRIFRQFQLVVN--LKLFYG  342 (362)
Q Consensus       278 gG~li~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~-~~~~~~~s~~~l~~ll~~~Gf~~v--~~~~~g  342 (362)
                      ||++++.+...............+     ....       ...+.+. .....+.+.+++...++++||+.+  +..++|
T Consensus       149 gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G  228 (238)
T COG2226         149 GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFG  228 (238)
T ss_pred             CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeee
Confidence            999999887764322221111111     0110       0011111 114566789999999999999755  466678


Q ss_pred             eeEEEEeeCc
Q 018003          343 HIQHYIVKIP  352 (362)
Q Consensus       343 ~~~~~~~~kp  352 (362)
                      ....+.+.|+
T Consensus       229 ~~~l~~g~K~  238 (238)
T COG2226         229 IVALHRGYKP  238 (238)
T ss_pred             eEEEEEEecC
Confidence            8888877764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.95  E-value=2.6e-27  Score=210.31  Aligned_cols=210  Identities=22%  Similarity=0.311  Sum_probs=92.5

Q ss_pred             eeeecCCCCCCcCCCCccchhcccCchhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHH
Q 018003          115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI  194 (362)
Q Consensus       115 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~  194 (362)
                      +.-+++..+..|+..         |..+++..++.||+..               .+.+...++.+|||+|||||.++..
T Consensus         9 v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~---------------~~~~~~~~g~~vLDv~~GtG~~~~~   64 (233)
T PF01209_consen    9 VRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKL---------------IKLLGLRPGDRVLDVACGTGDVTRE   64 (233)
T ss_dssp             -------------------------------------SHH---------------HHHHT--S--EEEEET-TTSHHHHH
T ss_pred             HHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHH---------------HhccCCCCCCEEEEeCCChHHHHHH
Confidence            444566777788765         6788899999998854               3344566788999999999999999


Q ss_pred             HHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHh
Q 018003          195 FAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISR  273 (362)
Q Consensus       195 l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r  273 (362)
                      +++. ++.++|+|+|+|+.|++.|++++...   ...+++++++|++++|+++++||+|++.+.+++++|+.++|+|+.|
T Consensus        65 l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~---~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~R  141 (233)
T PF01209_consen   65 LARRVGPNGKVVGVDISPGMLEVARKKLKRE---GLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYR  141 (233)
T ss_dssp             HGGGSS---EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHH
T ss_pred             HHHHCCCccEEEEecCCHHHHHHHHHHHHhh---CCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHH
Confidence            8876 55679999999999999999998875   2359999999999999999999999999999999999999999999


Q ss_pred             hccCCcEEEEEEEccCCCCcc-----------hhhhHHHHHhhhhcccccc-cccccCCHHHHHHHHHHCCCEEEE--EE
Q 018003          274 VLRPGGVFVGTTYIVDGPFNL-----------IPFSRLLRQVCFLDLKIVG-FSIPVLGFDDLKRIFRQFQLVVNL--KL  339 (362)
Q Consensus       274 ~LkpgG~li~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~l~~ll~~~Gf~~v~--~~  339 (362)
                      +|||||++++.+.........           .|++..+.......|.+.. ....+.+.+++.++++++||+.++  ..
T Consensus       142 VLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~  221 (233)
T PF01209_consen  142 VLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPL  221 (233)
T ss_dssp             HEEEEEEEEEEEEEB-SSHHHHHHHHH-----------------------------------------------------
T ss_pred             HcCCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999988876432111           1111211111111222221 145667899999999999998654  56


Q ss_pred             EeceeEEEEeeC
Q 018003          340 FYGHIQHYIVKI  351 (362)
Q Consensus       340 ~~g~~~~~~~~k  351 (362)
                      .+|....+++.|
T Consensus       222 ~~G~~~i~~g~K  233 (233)
T PF01209_consen  222 TFGIVTIHVGTK  233 (233)
T ss_dssp             ------------
T ss_pred             ccccccccccCC
Confidence            677777776654

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.92  E-value=5.9e-24  Score=192.93  Aligned_cols=180  Identities=16%  Similarity=0.222  Sum_probs=131.1

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003          171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f  249 (362)
                      +.+...++.+|||+|||+|.++..+++. ++..+|+|+|+|++|++.|+++..........++.++++|++.+|+++++|
T Consensus        67 ~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sf  146 (261)
T PLN02233         67 SWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYF  146 (261)
T ss_pred             HHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCE
Confidence            3445566889999999999999988876 455699999999999999988754210112458999999999999999999


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh----hh------hcccc-ccccccc
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV----CF------LDLKI-VGFSIPV  318 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~----~~------~~~~~-~~~~~~~  318 (362)
                      |+|++..+++|++|+..+++++.|+|||||.+++.++.........+....+...    ..      ..+.+ ......+
T Consensus       147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f  226 (261)
T PLN02233        147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEY  226 (261)
T ss_pred             eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999988764321111111000000    00      00000 0112457


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEEe--ceeEEEEee
Q 018003          319 LGFDDLKRIFRQFQLVVNLKLFY--GHIQHYIVK  350 (362)
Q Consensus       319 ~s~~~l~~ll~~~Gf~~v~~~~~--g~~~~~~~~  350 (362)
                      ++.+++.++++++||+.++....  |....++++
T Consensus       227 ~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  260 (261)
T PLN02233        227 LTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT  260 (261)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence            89999999999999988765443  445555543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.92  E-value=2.5e-24  Score=196.95  Aligned_cols=179  Identities=23%  Similarity=0.348  Sum_probs=130.2

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCCCCCCcCCCCccchhcccCchhhHHHhhhh
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~  150 (362)
                      +++||+|+++|....           ..++|+++|+++..++||+++++...........  ..+++.           -
T Consensus         2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d--~~~~~~-----------a   57 (272)
T PRK11088          2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGD--NKEMMQ-----------A   57 (272)
T ss_pred             cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCCc--CHHHHH-----------H
Confidence            489999999996543           6799999988889999999999753332221110  001111           1


Q ss_pred             hhhhccCCCCCcHH--HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHhhcC
Q 018003          151 RQNFVWGGFPGPEK--EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQES  225 (362)
Q Consensus       151 ~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~  225 (362)
                      |+.|.+.+++.+..  ..+.+.+.+. ....+|||+|||+|.++..+++..+.   ..++|+|+|+.+++.|+++     
T Consensus        58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----  131 (272)
T PRK11088         58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----  131 (272)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----
Confidence            34454555544322  2233444443 34578999999999999998876432   3799999999999999875     


Q ss_pred             CCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       226 ~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                         .+++.+.++|+..+|+++++||+|++...      | ..++++.|+|||||++++.++...
T Consensus       132 ---~~~~~~~~~d~~~lp~~~~sfD~I~~~~~------~-~~~~e~~rvLkpgG~li~~~p~~~  185 (272)
T PRK11088        132 ---YPQVTFCVASSHRLPFADQSLDAIIRIYA------P-CKAEELARVVKPGGIVITVTPGPR  185 (272)
T ss_pred             ---CCCCeEEEeecccCCCcCCceeEEEEecC------C-CCHHHHHhhccCCCEEEEEeCCCc
Confidence               46788999999999999999999998654      1 246899999999999999987653

>PLN02244 tocopherol O-methyltransferase

Probab=99.90  E-value=5e-22  Score=186.99  Aligned_cols=170  Identities=18%  Similarity=0.112  Sum_probs=130.2

Q ss_pred             HHHHHhhcCC-----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          166 FELMKGYLKP-----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       166 ~~~l~~~l~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ++.+.+.+..     .++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.++++.+..  +...++.++++|+.
T Consensus       102 ~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~--g~~~~v~~~~~D~~  178 (340)
T PLN02244        102 IEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ--GLSDKVSFQVADAL  178 (340)
T ss_pred             HHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEcCcc
Confidence            4445555554     567899999999999999999874 459999999999999999987665  22457999999999


Q ss_pred             CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCc----chhhhHHHHHhhhhccccccccc
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN----LIPFSRLLRQVCFLDLKIVGFSI  316 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  316 (362)
                      .+|+++++||+|++..+++|++|+..+++++.|+|||||++++.++.......    ..+............+.    ..
T Consensus       179 ~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~----~p  254 (340)
T PLN02244        179 NQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYY----LP  254 (340)
T ss_pred             cCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhcc----CC
Confidence            99999999999999999999999999999999999999999999876432211    11111111111110000    22


Q ss_pred             ccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          317 PVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       317 ~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      .+.+.+++.++++++||++++...+.
T Consensus       255 ~~~s~~~~~~~l~~aGf~~v~~~d~s  280 (340)
T PLN02244        255 AWCSTSDYVKLAESLGLQDIKTEDWS  280 (340)
T ss_pred             CCCCHHHHHHHHHHCCCCeeEeeeCc
Confidence            45689999999999999988776543

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.89  E-value=2e-22  Score=173.73  Aligned_cols=207  Identities=20%  Similarity=0.185  Sum_probs=155.0

Q ss_pred             ecCCCCCCcCCCCccchhcccCchhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHH
Q 018003          118 TAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK  197 (362)
Q Consensus       118 ~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~  197 (362)
                      +++..+..|+-+         |+.++...+|.|...+               ...+.+.++.++||++||||..+..+.+
T Consensus        65 vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~---------------v~~L~p~~~m~~lDvaGGTGDiaFril~  120 (296)
T KOG1540|consen   65 VFESVAKKYDIM---------NDAMSLGIHRLWKDMF---------------VSKLGPGKGMKVLDVAGGTGDIAFRILR  120 (296)
T ss_pred             HHHHHHHHHHHH---------HHHhhcchhHHHHHHh---------------hhccCCCCCCeEEEecCCcchhHHHHHH
Confidence            355555667655         7778888888896655               4467788889999999999999988887


Q ss_pred             hCCC------CEEEEEeCCHHHHHHHHHHHhhcCCCC-CCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHH
Q 018003          198 SGLF------SLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE  270 (362)
Q Consensus       198 ~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~  270 (362)
                      .-..      .+|+++|++++|+..++++..+. +.. ...+.|+++|++++||++.+||+.++.+.|..++|++++|+|
T Consensus       121 ~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~E  199 (296)
T KOG1540|consen  121 HVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALRE  199 (296)
T ss_pred             hhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHH
Confidence            6433      68999999999999999987553 222 234999999999999999999999999999999999999999


Q ss_pred             HHhhccCCcEEEEEEEccCCCCcch-----------hhhHHHHHhhhhcccccc-cccccCCHHHHHHHHHHCCCEEEE-
Q 018003          271 ISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLRQVCFLDLKIVG-FSIPVLGFDDLKRIFRQFQLVVNL-  337 (362)
Q Consensus       271 i~r~LkpgG~li~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~-~~~~~~s~~~l~~ll~~~Gf~~v~-  337 (362)
                      ++|+|||||+|.+.++.........           |.+..+....+..+++.. ....+.+.+++..+.+++||..+. 
T Consensus       200 AYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~~  279 (296)
T KOG1540|consen  200 AYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVNG  279 (296)
T ss_pred             HHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccccc
Confidence            9999999999999887654321111           112222222222222221 146678999999999999997654 


Q ss_pred             --EEEeceeEEEEe
Q 018003          338 --KLFYGHIQHYIV  349 (362)
Q Consensus       338 --~~~~g~~~~~~~  349 (362)
                        ..++|....+.+
T Consensus       280 ye~lt~Gv~aIH~g  293 (296)
T KOG1540|consen  280 YENLTFGVVAIHSG  293 (296)
T ss_pred             cccceeeeeeeehh
Confidence              555665555443

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.88  E-value=1.2e-21  Score=181.51  Aligned_cols=155  Identities=19%  Similarity=0.200  Sum_probs=120.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+++++++.|+++.+..  ....++.++++|++++++.+++||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~--~~~~~i~~~~~dae~l~~~~~~FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMD--PVTSTIEYLCTTAEKLADEGRKFDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CcccceeEEecCHHHhhhccCCCCEEEEh
Confidence            3577999999999999999988754  9999999999999999876543  11347999999999998888899999999


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh-hhhcccccccc--cccCCHHHHHHHHHHCC
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV-CFLDLKIVGFS--IPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~s~~~l~~ll~~~G  332 (362)
                      ++|||+.|+..+++++.++|||||.+++.+++....    .+...+... ....+...+.|  ..+++++++.++|+++|
T Consensus       206 ~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aG  281 (322)
T PLN02396        206 EVIEHVANPAEFCKSLSALTIPNGATVLSTINRTMR----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRAS  281 (322)
T ss_pred             hHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHH----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcC
Confidence            999999999999999999999999999999875321    111111000 00000111112  35789999999999999


Q ss_pred             CEEEEE
Q 018003          333 LVVNLK  338 (362)
Q Consensus       333 f~~v~~  338 (362)
                      |++++.
T Consensus       282 f~i~~~  287 (322)
T PLN02396        282 VDVKEM  287 (322)
T ss_pred             CeEEEE
Confidence            988765

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.87  E-value=2.1e-20  Score=167.08  Aligned_cols=182  Identities=21%  Similarity=0.218  Sum_probs=135.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +.++..+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+++++...   ...++.++++|+..++++
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~  111 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA---GLHNVELVHGNAMELPFD  111 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc---CCCceEEEEechhcCCCC
Confidence            44566677777899999999999999999876 45679999999999999999987654   246899999999998888


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchh-----------hhHHHHHhhhhcc-cccc
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-----------FSRLLRQVCFLDL-KIVG  313 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~  313 (362)
                      +++||+|++..+++|++++..+++++.++|+|||++++.++.......+..           .+..........+ ...+
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  191 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQE  191 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHH
Confidence            889999999999999999999999999999999999988765432211111           1110000000000 0011


Q ss_pred             cccccCCHHHHHHHHHHCCCEEEEEEE--eceeEEEEeeC
Q 018003          314 FSIPVLGFDDLKRIFRQFQLVVNLKLF--YGHIQHYIVKI  351 (362)
Q Consensus       314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~~--~g~~~~~~~~k  351 (362)
                      ....+++.++++++|+++||++++...  +|....++++|
T Consensus       192 ~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       192 STRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             HHHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence            145678999999999999998765544  45666666654

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.86  E-value=3.4e-20  Score=168.48  Aligned_cols=163  Identities=13%  Similarity=0.131  Sum_probs=129.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ......++..+...++.+|||||||+|..+..+++.. ..+|+|+|+|+.+++.|+++...     ..++.+.++|+...
T Consensus        38 ~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~-----~~~i~~~~~D~~~~  111 (263)
T PTZ00098         38 IEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD-----KNKIEFEANDILKK  111 (263)
T ss_pred             hHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc-----CCceEEEECCcccC
Confidence            4446677777888889999999999999998887753 45999999999999999987543     25799999999988


Q ss_pred             CCCCCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003          243 PFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                      |+++++||+|++..+++|++  ++..+++++.++|||||.+++.++.......   +.........     .. ...+.+
T Consensus       112 ~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~---~~~~~~~~~~-----~~-~~~~~~  182 (263)
T PTZ00098        112 DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN---WDEEFKAYIK-----KR-KYTLIP  182 (263)
T ss_pred             CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC---cHHHHHHHHH-----hc-CCCCCC
Confidence            98889999999999999986  7889999999999999999999886543211   1111211111     01 345679


Q ss_pred             HHHHHHHHHHCCCEEEEEEE
Q 018003          321 FDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      ..++.++|+++||+++....
T Consensus       183 ~~~~~~~l~~aGF~~v~~~d  202 (263)
T PTZ00098        183 IQEYGDLIKSCNFQNVVAKD  202 (263)
T ss_pred             HHHHHHHHHHCCCCeeeEEe
Confidence            99999999999998887654

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.86  E-value=1.5e-21  Score=168.64  Aligned_cols=153  Identities=19%  Similarity=0.255  Sum_probs=121.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      -++.+|||||||-|.++..+++.|.  +|+|+|+++.+++.|+.+....    .-.+.+.+..++++....++||+|+|.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~----gv~i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES----GVNIDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc----cccccchhhhHHHHHhcCCCccEEEEh
Confidence            4688999999999999999999996  9999999999999999987776    455778888888877666899999999


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh-hcccccc--cccccCCHHHHHHHHHHCC
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF-LDLKIVG--FSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~s~~~l~~ll~~~G  332 (362)
                      .||||++||..+++++.+++||||.++++|++..    ..+++..+...-+ ..+-..+  ....+..++++...+...|
T Consensus       132 EVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt----~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~  207 (243)
T COG2227         132 EVLEHVPDPESFLRACAKLVKPGGILFLSTINRT----LKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN  207 (243)
T ss_pred             hHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC----HHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence            9999999999999999999999999999999964    2232222111100 0011111  1356788999999999999


Q ss_pred             CEEEEE
Q 018003          333 LVVNLK  338 (362)
Q Consensus       333 f~~v~~  338 (362)
                      +.....
T Consensus       208 ~~~~~~  213 (243)
T COG2227         208 LKIIDR  213 (243)
T ss_pred             ceEEee
Confidence            977654

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.85  E-value=8.5e-21  Score=159.63  Aligned_cols=142  Identities=26%  Similarity=0.430  Sum_probs=110.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ..++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.  .           +......+....+.++++||+|++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~fD~i~~   84 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--R-----------NVVFDNFDAQDPPFPDGSFDLIIC   84 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--T-----------TSEEEEEECHTHHCHSSSEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--h-----------hhhhhhhhhhhhhccccchhhHhh
Confidence            45688999999999999999988877  99999999999887  1           233444444455556789999999


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV  334 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~  334 (362)
                      +.+|+|++|+..+|+++.++|||||++++.++....     ........ +........ |..+++.++++.+++++||+
T Consensus        85 ~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~ll~~~G~~  157 (161)
T PF13489_consen   85 NDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLK-WRYDRPYGG-HVHFFSPDELRQLLEQAGFE  157 (161)
T ss_dssp             ESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHH-CCGTCHHTT-TTEEBBHHHHHHHHHHTTEE
T ss_pred             HHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHh-cCCcCccCc-eeccCCHHHHHHHHHHCCCE
Confidence            999999999999999999999999999999998632     11111111 111111113 78899999999999999999


Q ss_pred             EEEE
Q 018003          335 VNLK  338 (362)
Q Consensus       335 ~v~~  338 (362)
                      +++.
T Consensus       158 iv~~  161 (161)
T PF13489_consen  158 IVEE  161 (161)
T ss_dssp             EEE-
T ss_pred             EEEC
Confidence            8863

...

>PRK05785 hypothetical protein; Provisional

Probab=99.85  E-value=8.6e-21  Score=168.46  Aligned_cols=162  Identities=25%  Similarity=0.204  Sum_probs=118.5

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +.+|||+|||+|.++..+++.. ..+|+|+|+|++|++.|+++           ..++++|++.+|+++++||+|++..+
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~-----------~~~~~~d~~~lp~~d~sfD~v~~~~~  119 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA-----------DDKVVGSFEALPFRDKSFDVVMSSFA  119 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc-----------cceEEechhhCCCCCCCEEEEEecCh
Confidence            6799999999999999998884 35999999999999999873           23578999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCC----------cchhhhHHHHHhhhhccccc-ccccccCCHHHHHH
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF----------NLIPFSRLLRQVCFLDLKIV-GFSIPVLGFDDLKR  326 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~l~~  326 (362)
                      ++|++|+..+++++.|+|||.+ .++....++...          ...|++..+.......|.+. .....+.+.+++.+
T Consensus       120 l~~~~d~~~~l~e~~RvLkp~~-~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~  198 (226)
T PRK05785        120 LHASDNIEKVIAEFTRVSRKQV-GFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHRE  198 (226)
T ss_pred             hhccCCHHHHHHHHHHHhcCce-EEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999942 233322222110          01111111111111112111 12456678999999


Q ss_pred             HHHH-CCCEEEEEEEeceeEEEEeeCc
Q 018003          327 IFRQ-FQLVVNLKLFYGHIQHYIVKIP  352 (362)
Q Consensus       327 ll~~-~Gf~~v~~~~~g~~~~~~~~kp  352 (362)
                      ++++ .++...+..++|....++++|.
T Consensus       199 ~~~~~~~~~~~~~~~~G~~~~~~~~k~  225 (226)
T PRK05785        199 IFEKYADIKVYEERGLGLVYFVVGSSR  225 (226)
T ss_pred             HHHHHhCceEEEEccccEEEEEEEeeC
Confidence            9999 5566777888899988888763

>TIGR00452 methyltransferase, putative

Probab=99.85  E-value=5.7e-20  Score=169.57  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=123.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+...+...++++|||||||+|.++..++..++ ..|+|+|+|+.|+.+++......  ....++.+..++++++|.. 
T Consensus       111 ~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~--~~~~~v~~~~~~ie~lp~~-  186 (314)
T TIGR00452       111 DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLL--DNDKRAILEPLGIEQLHEL-  186 (314)
T ss_pred             HHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHh--ccCCCeEEEECCHHHCCCC-
Confidence            5667777777789999999999999998888875 47999999999988754321111  0135788888999888754 


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      .+||+|+++++++|+++|..+|++++++|||||.|++.+...++..... ....  ....   .... .....+..++..
T Consensus       187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~-l~p~--~ry~---k~~n-v~flpS~~~L~~  259 (314)
T TIGR00452       187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTV-LVPK--DRYA---KMKN-VYFIPSVSALKN  259 (314)
T ss_pred             CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccc-cCch--HHHH---hccc-cccCCCHHHHHH
Confidence            4799999999999999999999999999999999999987654422111 0000  0000   0011 234568999999


Q ss_pred             HHHHCCCEEEEEEEece
Q 018003          327 IFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       327 ll~~~Gf~~v~~~~~g~  343 (362)
                      +|+++||+.++......
T Consensus       260 ~L~~aGF~~V~i~~~~~  276 (314)
T TIGR00452       260 WLEKVGFENFRILDVLK  276 (314)
T ss_pred             HHHHCCCeEEEEEeccC
Confidence            99999999988765433

Known examples to date are restricted to the proteobacteria.

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.85  E-value=5.2e-20  Score=171.58  Aligned_cols=166  Identities=21%  Similarity=0.237  Sum_probs=124.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+...+.+.++.+|||||||+|.++..++..++ ..|+|+|+|+.++.+++......  ....++.++.+|++.+|+ +
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~--~~~~~i~~~~~d~e~lp~-~  187 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLL--GNDQRAHLLPLGIEQLPA-L  187 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhc--CCCCCeEEEeCCHHHCCC-c
Confidence            5667777766789999999999999999999875 36999999999987654432211  013579999999999988 7


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      ++||+|++..+++|+.||..+++++++.|+|||.+++.+...++......+-.   ..+.   .... .....+..++..
T Consensus       188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~---~~y~---~~~~-~~~lps~~~l~~  260 (322)
T PRK15068        188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPG---DRYA---KMRN-VYFIPSVPALKN  260 (322)
T ss_pred             CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCch---hHHh---cCcc-ceeCCCHHHHHH
Confidence            88999999999999999999999999999999999998876543211110000   0000   1111 223458999999


Q ss_pred             HHHHCCCEEEEEEEece
Q 018003          327 IFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       327 ll~~~Gf~~v~~~~~g~  343 (362)
                      +|+++||+.++......
T Consensus       261 ~L~~aGF~~i~~~~~~~  277 (322)
T PRK15068        261 WLERAGFKDVRIVDVSV  277 (322)
T ss_pred             HHHHcCCceEEEEeCCC
Confidence            99999999887765443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.85  E-value=4.1e-20  Score=167.64  Aligned_cols=178  Identities=15%  Similarity=0.155  Sum_probs=129.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~  245 (362)
                      +.+++.+. .++.+|||+|||+|.++..+++.+.  +|+|+|+|++|++.|+++....  +...++.++++|+.+++ +.
T Consensus        35 ~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~--g~~~~v~~~~~d~~~l~~~~  109 (255)
T PRK11036         35 DRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAK--GVSDNMQFIHCAAQDIAQHL  109 (255)
T ss_pred             HHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc--CCccceEEEEcCHHHHhhhc
Confidence            34455554 3467999999999999999999875  9999999999999999988765  22357899999997764 56


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhh----HHHHHhhhhcccccccccccCCH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS----RLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      +++||+|++..+++|+.+|..+++++.++|||||++++..++.+... ....+    ....................+++
T Consensus       110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  188 (255)
T PRK11036        110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLL-MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP  188 (255)
T ss_pred             CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHH-HHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence            78999999999999999999999999999999999999888754210 00000    00001000000000002345889


Q ss_pred             HHHHHHHHHCCCEEEEEEEeceeEEEEee
Q 018003          322 DDLKRIFRQFQLVVNLKLFYGHIQHYIVK  350 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~  350 (362)
                      +++.++++++||+++...-.+.+..|+..
T Consensus       189 ~~l~~~l~~aGf~~~~~~gi~~~~~~~~~  217 (255)
T PRK11036        189 EQVYQWLEEAGWQIMGKTGVRVFHDYLRN  217 (255)
T ss_pred             HHHHHHHHHCCCeEeeeeeEEEEeeccCc
Confidence            99999999999999876655555555543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.84  E-value=1e-19  Score=165.07  Aligned_cols=158  Identities=16%  Similarity=0.103  Sum_probs=118.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+++.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.|++          .++.++++|++.++ ++
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~----------~~~~~~~~d~~~~~-~~   87 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE----------RGVDARTGDVRDWK-PK   87 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh----------cCCcEEEcChhhCC-CC
Confidence            45566677777899999999999999999998776799999999999999976          25789999998775 56


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH--Hhhhhccccc--ccccccCCHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--QVCFLDLKIV--GFSIPVLGFD  322 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~s~~  322 (362)
                      ++||+|+++.++||++|+..+++++.++|||||.+++..+..... ........+.  ..+.......  .....+.+.+
T Consensus        88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  166 (255)
T PRK14103         88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPA  166 (255)
T ss_pred             CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHH
Confidence            789999999999999999999999999999999999986542111 1111112111  1111000000  1023457899


Q ss_pred             HHHHHHHHCCCEEE
Q 018003          323 DLKRIFRQFQLVVN  336 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v  336 (362)
                      .+.++|+++||++.
T Consensus       167 ~~~~~l~~aGf~v~  180 (255)
T PRK14103        167 GYAELLTDAGCKVD  180 (255)
T ss_pred             HHHHHHHhCCCeEE
Confidence            99999999999753

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.83  E-value=4.9e-19  Score=174.69  Aligned_cols=161  Identities=16%  Similarity=0.121  Sum_probs=128.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ..+.+.+.+...++.+|||||||+|..+..+++.. +.+++|+|+|+.+++.|+++....    ..++.+.++|+...++
T Consensus       254 ~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~----~~~v~~~~~d~~~~~~  328 (475)
T PLN02336        254 TTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGR----KCSVEFEVADCTKKTY  328 (475)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcC----CCceEEEEcCcccCCC
Confidence            34556666666678899999999999998888764 469999999999999999876543    4579999999999888


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++++||+|++..+++|++|+..++++++++|||||.+++.++..........+ ...   ..    ..  ...+.+.+++
T Consensus       329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~-~~~---~~----~~--g~~~~~~~~~  398 (475)
T PLN02336        329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF-AEY---IK----QR--GYDLHDVQAY  398 (475)
T ss_pred             CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH-HHH---HH----hc--CCCCCCHHHH
Confidence            88899999999999999999999999999999999999998876432121111 111   11    11  2356789999


Q ss_pred             HHHHHHCCCEEEEEEE
Q 018003          325 KRIFRQFQLVVNLKLF  340 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~  340 (362)
                      .++++++||+++....
T Consensus       399 ~~~l~~aGF~~i~~~d  414 (475)
T PLN02336        399 GQMLKDAGFDDVIAED  414 (475)
T ss_pred             HHHHHHCCCeeeeeec
Confidence            9999999999886554

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.83  E-value=2.6e-19  Score=162.13  Aligned_cols=152  Identities=26%  Similarity=0.321  Sum_probs=120.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+.+.+...++.+|||+|||+|.++..+.+.+.  +++|+|+|+.|++.++++.        ....++++|++.+|++
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~--------~~~~~~~~d~~~~~~~  100 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKD--------AADHYLAGDIESLPLA  100 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhC--------CCCCEEEcCcccCcCC
Confidence            35566666665678999999999999999888764  9999999999999998862        2356889999999998


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|+++.++++.+|+..+++++.++|||||.++++++.....    +.+........    ..+....+++.+++.
T Consensus       101 ~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~----~el~~~~~~~~----~~~~~~~~~~~~~l~  172 (251)
T PRK10258        101 TATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL----PELHQAWQAVD----ERPHANRFLPPDAIE  172 (251)
T ss_pred             CCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch----HHHHHHHHHhc----cCCccccCCCHHHHH
Confidence            8999999999999999999999999999999999999998876432    11222111111    112246788999999


Q ss_pred             HHHHHCCCEE
Q 018003          326 RIFRQFQLVV  335 (362)
Q Consensus       326 ~ll~~~Gf~~  335 (362)
                      .++...|++.
T Consensus       173 ~~l~~~~~~~  182 (251)
T PRK10258        173 QALNGWRYQH  182 (251)
T ss_pred             HHHHhCCcee
Confidence            9999988854

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.82  E-value=3.1e-18  Score=153.60  Aligned_cols=184  Identities=21%  Similarity=0.208  Sum_probs=135.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+...+...++.+|||+|||+|.++..++..++ ..+++|+|+++.+++.+++++...  ....++.++.+|+...++.
T Consensus        41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~  118 (239)
T PRK00216         41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL--GLSGNVEFVQGDAEALPFP  118 (239)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc--ccccCeEEEecccccCCCC
Confidence            3445555555678999999999999999988875 579999999999999999987653  1235789999999888877


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHH--------hhhhcc----cccc
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--------VCFLDL----KIVG  313 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~  313 (362)
                      .++||+|++..+++|+.++..+++++.++|+|||.+++.+..................        .+....    ....
T Consensus       119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (239)
T PRK00216        119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAE  198 (239)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHH
Confidence            7899999999999999999999999999999999999887755322111110000000        000000    0001


Q ss_pred             cccccCCHHHHHHHHHHCCCEEEEEEEe--ceeEEEEeeCc
Q 018003          314 FSIPVLGFDDLKRIFRQFQLVVNLKLFY--GHIQHYIVKIP  352 (362)
Q Consensus       314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~~~--g~~~~~~~~kp  352 (362)
                      ....+++.+++.++|+++||+.++....  |.+..+++.||
T Consensus       199 ~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~  239 (239)
T PRK00216        199 SIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP  239 (239)
T ss_pred             HHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence            0135678999999999999988766654  66788888776

>PRK08317 hypothetical protein; Provisional

Probab=99.82  E-value=1.5e-18  Score=155.58  Aligned_cols=167  Identities=28%  Similarity=0.253  Sum_probs=129.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.++++....    ..++.+..+|+...+++
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~   84 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL----GPNVEFVRGDADGLPFP   84 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC----CCceEEEecccccCCCC
Confidence            456667777778999999999999999998875 5679999999999999999874333    56899999999988888


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCC---cchhhhHHHHHhhhhcccccccccccCCHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                      +++||+|++..+++|++++..+++++.++|||||.+++.++......   ............+..     . ....++..
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~  158 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD-----H-FADPWLGR  158 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh-----c-CCCCcHHH
Confidence            89999999999999999999999999999999999999887543211   111223333222220     1 23345667


Q ss_pred             HHHHHHHHCCCEEEEEEEece
Q 018003          323 DLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      .+.++|+++||+.+.......
T Consensus       159 ~~~~~l~~aGf~~~~~~~~~~  179 (241)
T PRK08317        159 RLPGLFREAGLTDIEVEPYTL  179 (241)
T ss_pred             HHHHHHHHcCCCceeEEEEEE
Confidence            899999999998876655443

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.81  E-value=1.2e-19  Score=138.53  Aligned_cols=95  Identities=35%  Similarity=0.579  Sum_probs=84.3

Q ss_pred             EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCC
Q 018003          182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW  261 (362)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~  261 (362)
                      ||+|||+|.++..+++. +..+++|+|+++++++.++++...      .++.+..+|++.+|+++++||+|++..+++|+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKN------EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTT------STEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccc------cCchheeehHHhCccccccccccccccceeec
Confidence            89999999999999999 446999999999999999998654      36679999999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhccCCcEEEE
Q 018003          262 SSPSTGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       262 ~d~~~~l~~i~r~LkpgG~li~  283 (362)
                      +++..+++++.|+|||||++++
T Consensus        74 ~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   74 EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.81  E-value=1.3e-18  Score=161.75  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=118.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+++..+..+++++|+|++|++.|+++..      ..++.++.+|++.+++++++||+|++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------~~~i~~i~gD~e~lp~~~~sFDvVIs~  185 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------LKECKIIEGDAEDLPFPTDYADRYVSA  185 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------ccCCeEEeccHHhCCCCCCceeEEEEc
Confidence            35779999999999999888877555699999999999999998743      246889999999999988999999999


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVV  335 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~  335 (362)
                      .+++|++++..+++++.++|||||.+++..+....     .+..+.....         ...+.+.+++.++++++||+.
T Consensus       186 ~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~~~~~---------~~~~~t~eEl~~lL~~aGF~~  251 (340)
T PLN02490        186 GSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRFFADV---------WMLFPKEEEYIEWFTKAGFKD  251 (340)
T ss_pred             ChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHHhhhh---------hccCCCHHHHHHHHHHCCCeE
Confidence            99999999999999999999999999887654321     1122111111         123468999999999999998


Q ss_pred             EEEEEec
Q 018003          336 NLKLFYG  342 (362)
Q Consensus       336 v~~~~~g  342 (362)
                      ++....+
T Consensus       252 V~i~~i~  258 (340)
T PLN02490        252 VKLKRIG  258 (340)
T ss_pred             EEEEEcC
Confidence            8776543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.81  E-value=3.8e-19  Score=159.11  Aligned_cols=172  Identities=19%  Similarity=0.271  Sum_probs=127.9

Q ss_pred             hhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH--HHhhcCC
Q 018003          149 GWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--FVQQESN  226 (362)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~--~~~~~~~  226 (362)
                      -||..+.|          +++..++..-.|++|||||||.|+++..++.+|+ ..|+|+|++.....+.+.  ++...  
T Consensus        97 EWrSd~KW----------~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~--  163 (315)
T PF08003_consen   97 EWRSDWKW----------DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQ--  163 (315)
T ss_pred             cccccchH----------HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCC--
Confidence            36666655          7888888777899999999999999999999986 579999999876665332  22211  


Q ss_pred             CCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh
Q 018003          227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF  306 (362)
Q Consensus       227 ~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~  306 (362)
                        ...+......++++|. .+.||+|++.+||+|..+|...|++++..|+|||.+++.|...++.....-.-..   ...
T Consensus       164 --~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~---rYa  237 (315)
T PF08003_consen  164 --DPPVFELPLGVEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPED---RYA  237 (315)
T ss_pred             --CccEEEcCcchhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCC---ccc
Confidence              2334444456788886 7889999999999999999999999999999999999999987664322110000   000


Q ss_pred             hcccccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          307 LDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       307 ~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                         .... .+...|...+..+|+++||+.++......
T Consensus       238 ---~m~n-v~FiPs~~~L~~wl~r~gF~~v~~v~~~~  270 (315)
T PF08003_consen  238 ---KMRN-VWFIPSVAALKNWLERAGFKDVRCVDVSP  270 (315)
T ss_pred             ---CCCc-eEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence               1111 34446999999999999999988765543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.81  E-value=1.9e-18  Score=155.80  Aligned_cols=160  Identities=13%  Similarity=0.134  Sum_probs=117.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ++.+|||+|||+|..+..+++.  .++.+++|+|+|+.|++.|++++...  ....++.++++|+..+|++  .+|+|++
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~D~vv~  131 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAIE--NASMVVL  131 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEeCChhhCCCC--CCCEEeh
Confidence            5789999999999999888773  46679999999999999999998764  1234799999999988764  4999999


Q ss_pred             cccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh--hcc---------cccccccccCCH
Q 018003          255 GAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF--LDL---------KIVGFSIPVLGF  321 (362)
Q Consensus       255 ~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~s~  321 (362)
                      +.++||+++.  ..+++++.++|||||.|++.+..........+.+........  ..+         ..........+.
T Consensus       132 ~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~  211 (247)
T PRK15451        132 NFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSV  211 (247)
T ss_pred             hhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCH
Confidence            9999999743  579999999999999999988654332222332222111111  000         001112344789


Q ss_pred             HHHHHHHHHCCCEEEEEEE
Q 018003          322 DDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~  340 (362)
                      ++..++|+++||..+...+
T Consensus       212 ~~~~~~L~~aGF~~v~~~~  230 (247)
T PRK15451        212 ETHKARLHKAGFEHSELWF  230 (247)
T ss_pred             HHHHHHHHHcCchhHHHHH
Confidence            9999999999998765543

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.80  E-value=6.8e-19  Score=147.31  Aligned_cols=176  Identities=18%  Similarity=0.225  Sum_probs=134.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEE-EEEecCCCCC-CC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP-FA  245 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~p-~~  245 (362)
                      .+..++.......+||+|||||.+...+... +..+|+++|+++.|-+++.+.+++.   ...++. +++++.+++| ++
T Consensus        67 ~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~---k~~~~~~fvva~ge~l~~l~  142 (252)
T KOG4300|consen   67 GIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEK---KPLQVERFVVADGENLPQLA  142 (252)
T ss_pred             hhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhc---cCcceEEEEeechhcCcccc
Confidence            3444555555567899999999998776543 5679999999999999999988776   256676 9999999998 88


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      ++++|+|++..+|....||.+.|+++.|+|+|||++++.+.....+..+..+++...+..+   +... ....++.+.+ 
T Consensus       143 d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~---~~~~-dGC~ltrd~~-  217 (252)
T KOG4300|consen  143 DGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLW---HLES-DGCVLTRDTG-  217 (252)
T ss_pred             cCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHhchhh---heec-cceEEehhHH-
Confidence            9999999999999999999999999999999999999999887655444444444433332   2222 3445666666 


Q ss_pred             HHHHHCCCEEEEEEEeceeEEEEeeCc
Q 018003          326 RIFRQFQLVVNLKLFYGHIQHYIVKIP  352 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g~~~~~~~~kp  352 (362)
                      +.|+++.|+..+.........|....|
T Consensus       218 e~Leda~f~~~~~kr~~~~ttw~~V~~  244 (252)
T KOG4300|consen  218 ELLEDAEFSIDSCKRFNFGTTWVIVEP  244 (252)
T ss_pred             HHhhhcccccchhhcccCCceEEEEec
Confidence            577889998877766666554443333

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.80  E-value=1.3e-18  Score=158.01  Aligned_cols=162  Identities=20%  Similarity=0.179  Sum_probs=115.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+.+..++|.+|||||||.|.++..++++. +++|+|+++|+++.+.+++++++.  +...++.+...|..+++. 
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~--gl~~~v~v~~~D~~~~~~-  126 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA--GLEDRVEVRLQDYRDLPG-  126 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS--TSSSTEEEEES-GGG----
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEeeccccCC-
Confidence            5667778888899999999999999999999994 469999999999999999999876  345689999999987753 


Q ss_pred             CCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcc------hhhhHHHHHhhhhcccccccccc
Q 018003          246 SSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL------IPFSRLLRQVCFLDLKIVGFSIP  317 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  317 (362)
                        +||.|++..++||+.  +...+++++.++|||||++++.+.........      .+|+.+        +..++  ..
T Consensus       127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~k--------yiFPg--g~  194 (273)
T PF02353_consen  127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRK--------YIFPG--GY  194 (273)
T ss_dssp             --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHH--------HTSTT--S-
T ss_pred             --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEE--------eeCCC--CC
Confidence              899999999999995  55799999999999999999887665321100      022211        12233  45


Q ss_pred             cCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          318 VLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       318 ~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      ..+..++...+++.||++......+.
T Consensus       195 lps~~~~~~~~~~~~l~v~~~~~~~~  220 (273)
T PF02353_consen  195 LPSLSEILRAAEDAGLEVEDVENLGR  220 (273)
T ss_dssp             --BHHHHHHHHHHTT-EEEEEEE-HH
T ss_pred             CCCHHHHHHHHhcCCEEEEEEEEcCc
Confidence            67888999999999999888776653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.79  E-value=7.3e-18  Score=154.41  Aligned_cols=156  Identities=21%  Similarity=0.244  Sum_probs=121.1

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V  252 (362)
                      ...++.+|||+|||+|..+..+++. ++..+|+|+|+++.+++.|+++....   ...++.++.+|++.+++++++||+|
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~---g~~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA---GYTNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEcchhhCCCCCCceeEE
Confidence            3456889999999999987766654 55568999999999999999987664   2358899999999999888899999


Q ss_pred             EecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003          253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      +++.+++|++++..+++++.++|||||++++.+......  ....+......+.      +.....++..++.++|+++|
T Consensus       151 i~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~~~~------~~~~~~~~~~e~~~~l~~aG  222 (272)
T PRK11873        151 ISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAELYA------GCVAGALQEEEYLAMLAEAG  222 (272)
T ss_pred             EEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHHHHh------ccccCCCCHHHHHHHHHHCC
Confidence            999999999999999999999999999999987765432  1111111111110      11234568899999999999


Q ss_pred             CEEEEEEE
Q 018003          333 LVVNLKLF  340 (362)
Q Consensus       333 f~~v~~~~  340 (362)
                      |..++...
T Consensus       223 f~~v~i~~  230 (272)
T PRK11873        223 FVDITIQP  230 (272)
T ss_pred             CCceEEEe
Confidence            98776543

>TIGR00740 methyltransferase, putative

Probab=99.79  E-value=3.5e-18  Score=153.56  Aligned_cols=157  Identities=12%  Similarity=0.111  Sum_probs=118.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ++.+|||+|||+|.++..+++..  ++.+++|+|+|+.|++.|++++...  ....++.++++|+..++++  .+|+|++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCCCC--CCCEEee
Confidence            57799999999999999988863  5679999999999999999988764  1234789999999988764  4899999


Q ss_pred             cccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhc--c----------cccccccccCC
Q 018003          255 GAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLD--L----------KIVGFSIPVLG  320 (362)
Q Consensus       255 ~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~s  320 (362)
                      ..+++|+++  +..+++++.++|||||.+++.++.........+.+..+...+...  +          .... +....+
T Consensus       129 ~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~s  207 (239)
T TIGR00740       129 NFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALEN-VMRTDS  207 (239)
T ss_pred             ecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc-cCCCCC
Confidence            999999964  478999999999999999999876533222223332222211100  0          0111 445689


Q ss_pred             HHHHHHHHHHCCCEEEEE
Q 018003          321 FDDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~  338 (362)
                      .+++..+++++||..++.
T Consensus       208 ~~~~~~~l~~aGF~~~~~  225 (239)
T TIGR00740       208 IETHKARLKNVGFSHVEL  225 (239)
T ss_pred             HHHHHHHHHHcCCchHHH
Confidence            999999999999986543

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.79  E-value=1.9e-18  Score=144.31  Aligned_cols=107  Identities=22%  Similarity=0.435  Sum_probs=95.9

Q ss_pred             CCCeEEEEcCccchHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~  253 (362)
                      .+.+|||+|||+|.++..++ +.++..+++|+|+|++|++.|+++++..   ...++.++++|+.+++  ++ +.||+|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~---~~~ni~~~~~d~~~l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL---GLDNIEFIQGDIEDLPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT---TSTTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc---cccccceEEeehhccccccC-CCeeEEE
Confidence            46799999999999999999 4566779999999999999999988765   2458999999999977  55 7899999


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +..+++|+.++..+++++.++||+||.+++..+.
T Consensus        79 ~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   79 SNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            9999999999999999999999999999999887

...

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.78  E-value=4.3e-19  Score=154.31  Aligned_cols=150  Identities=22%  Similarity=0.238  Sum_probs=113.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC----CEEEEEecCCCCCCCCCcceEEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE----NFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~----~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      |++|||+|||+|.++..|++.|.  +|+|+|+++.|++.|++...... ....    ++++.+.|++.+.   +.||+|+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP-~~~~~~~y~l~~~~~~~E~~~---~~fDaVv  163 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDP-VLEGAIAYRLEYEDTDVEGLT---GKFDAVV  163 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCc-hhccccceeeehhhcchhhcc---cccceee
Confidence            57899999999999999999987  99999999999999999843331 1112    3667777777763   4599999


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchh-hhHHHHHhhhhccccccc--ccccCCHHHHHHHHHH
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-FSRLLRQVCFLDLKIVGF--SIPVLGFDDLKRIFRQ  330 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~s~~~l~~ll~~  330 (362)
                      |..++||+.||+.++..+.++|||||.+++++-+......... ++...--.+    -..|.  -..|.++.++..++++
T Consensus       164 csevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~i----vp~Gth~~ekfi~p~e~~~~l~~  239 (282)
T KOG1270|consen  164 CSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRI----VPKGTHTWEKFINPEELTSILNA  239 (282)
T ss_pred             eHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHh----cCCCCcCHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999988743211111 111111111    11121  2567899999999999


Q ss_pred             CCCEEEE
Q 018003          331 FQLVVNL  337 (362)
Q Consensus       331 ~Gf~~v~  337 (362)
                      +++.+..
T Consensus       240 ~~~~v~~  246 (282)
T KOG1270|consen  240 NGAQVND  246 (282)
T ss_pred             cCcchhh
Confidence            9996643

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.78  E-value=8.6e-18  Score=149.51  Aligned_cols=146  Identities=16%  Similarity=0.125  Sum_probs=118.3

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccccc
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH  259 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~  259 (362)
                      +|||||||+|.++..+++..+..+++|+|+|+++++.+++++...  +...++.++.+|+...|++ ++||+|++..+++
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~   78 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--GLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIH   78 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--CCCcceEEEecccccCCCC-CCCCEeehHHHHH
Confidence            799999999999999998876679999999999999999988764  2346789999999776654 5899999999999


Q ss_pred             CCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003          260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       260 h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~  339 (362)
                      |++++..+++++.++|||||.+++.++..+.....       .       .... ...+.+..+|.++++++||+.++..
T Consensus        79 ~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------~-------~~~~-~~~~~s~~~~~~~l~~~Gf~~~~~~  143 (224)
T smart00828       79 HIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-------E-------HEET-TSYLVTREEWAELLARNNLRVVEGV  143 (224)
T ss_pred             hCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-------c-------cccc-ccccCCHHHHHHHHHHCCCeEEEeE
Confidence            99999999999999999999999988754311000       0       0001 2346789999999999999998877


Q ss_pred             Eece
Q 018003          340 FYGH  343 (362)
Q Consensus       340 ~~g~  343 (362)
                      ..+.
T Consensus       144 ~~~~  147 (224)
T smart00828      144 DASL  147 (224)
T ss_pred             ECcH
Confidence            6544

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.77  E-value=1.6e-17  Score=148.70  Aligned_cols=162  Identities=15%  Similarity=0.099  Sum_probs=131.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+.+..++|.+|||||||.|.++..++++. +.+|+|+++|+++.+.++++++..  +...++++...|...+.  
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~--gl~~~v~v~l~d~rd~~--  135 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR--GLEDNVEVRLQDYRDFE--  135 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc--CCCcccEEEeccccccc--
Confidence            5678888899999999999999999999999986 579999999999999999998887  33458899988888764  


Q ss_pred             CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCC--cchhhhHHHHHhhhhcccccccccccCCH
Q 018003          246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                       +.||.|++..++||+..  ...+++.+.++|+|||++++.+.......  ...+|..+         .+.+ .....+.
T Consensus       136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~---------yiFP-gG~lPs~  204 (283)
T COG2230         136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDK---------YIFP-GGELPSI  204 (283)
T ss_pred             -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHH---------hCCC-CCcCCCH
Confidence             44999999999999976  78999999999999999999877654321  22223222         1222 4566788


Q ss_pred             HHHHHHHHHCCCEEEEEEEece
Q 018003          322 DDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      ..+.+..+++||++.+....+.
T Consensus       205 ~~i~~~~~~~~~~v~~~~~~~~  226 (283)
T COG2230         205 SEILELASEAGFVVLDVESLRP  226 (283)
T ss_pred             HHHHHHHHhcCcEEehHhhhcH
Confidence            9999999999999887765543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.77  E-value=5.7e-17  Score=143.84  Aligned_cols=178  Identities=20%  Similarity=0.240  Sum_probs=128.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      .+...+...++.+|||+|||+|.++..+++.++. .+++++|+++.+++.++++.. .    ..++.++.+|+.+.++..
T Consensus        30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~----~~~i~~~~~d~~~~~~~~  104 (223)
T TIGR01934        30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L----PLNIEFIQADAEALPFED  104 (223)
T ss_pred             HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c----CCCceEEecchhcCCCCC
Confidence            3444444556889999999999999999988764 689999999999999998765 2    357899999999888777


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh--------cc----ccccc
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL--------DL----KIVGF  314 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--------~~----~~~~~  314 (362)
                      ++||+|++..+++|+.++..+++++.++|+|||++++.+......................        ..    .....
T Consensus       105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (223)
T TIGR01934       105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPES  184 (223)
T ss_pred             CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHH
Confidence            8999999999999999999999999999999999999876543221111111111000000        00    00011


Q ss_pred             ccccCCHHHHHHHHHHCCCEEEEEEEe--ceeEEEEee
Q 018003          315 SIPVLGFDDLKRIFRQFQLVVNLKLFY--GHIQHYIVK  350 (362)
Q Consensus       315 ~~~~~s~~~l~~ll~~~Gf~~v~~~~~--g~~~~~~~~  350 (362)
                      ...+++.+++..+|+++||+.+.....  +....++++
T Consensus       185 ~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~  222 (223)
T TIGR01934       185 IRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGK  222 (223)
T ss_pred             HHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEec
Confidence            245678999999999999986544443  433455544

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.77  E-value=2.4e-18  Score=144.77  Aligned_cols=162  Identities=14%  Similarity=0.249  Sum_probs=123.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-CC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-p~  244 (362)
                      +.+.+++.+  +.+|||+|||.|.++..|.+. .+.+.+|+|++++.+..|.++          .+.++++|++. + .|
T Consensus         5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----------Gv~Viq~Dld~gL~~f   71 (193)
T PF07021_consen    5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----------GVSVIQGDLDEGLADF   71 (193)
T ss_pred             HHHHHHcCC--CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----------CCCEEECCHHHhHhhC
Confidence            566777766  889999999999999999886 467999999999999998874          78899999965 4 38


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH----HHHhhhhcccccccccccCC
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL----LRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~s  320 (362)
                      ++++||.|+++.+|+++.+|..+|+|+.|+   |...+++.||..........+.+    ....+...+...+ +.+++|
T Consensus        72 ~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTP-Nih~~T  147 (193)
T PF07021_consen   72 PDQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTP-NIHLCT  147 (193)
T ss_pred             CCCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCC-Cccccc
Confidence            899999999999999999999999999776   66888888876421111111100    0000011112233 788999


Q ss_pred             HHHHHHHHHHCCCEEEEEEEeceeE
Q 018003          321 FDDLKRIFRQFQLVVNLKLFYGHIQ  345 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~~g~~~  345 (362)
                      .++++.++++.|+++.+....+...
T Consensus       148 i~DFe~lc~~~~i~I~~~~~~~~~~  172 (193)
T PF07021_consen  148 IKDFEDLCRELGIRIEERVFLDGGR  172 (193)
T ss_pred             HHHHHHHHHHCCCEEEEEEEEcCCC
Confidence            9999999999999999888765543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.76  E-value=2.2e-17  Score=148.08  Aligned_cols=142  Identities=27%  Similarity=0.414  Sum_probs=116.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      .+.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++..       .++.++.+|+...++++++||+|++.+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~fD~vi~~~  106 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------ENVQFICGDAEKLPLEDSSFDLIVSNL  106 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------CCCeEEecchhhCCCCCCceeEEEEhh
Confidence            3578999999999999999999887789999999999999988632       368899999999988889999999999


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVN  336 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v  336 (362)
                      +++|+.++..+++++.++|||||.+++.++.....       ..+.....   .   ....+.+..++.+++.++ |..+
T Consensus       107 ~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~~~~~---~---~~~~~~~~~~~~~~l~~~-f~~~  172 (240)
T TIGR02072       107 ALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELRQSFG---Q---HGLRYLSLDELKALLKNS-FELL  172 (240)
T ss_pred             hhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHHHHHH---H---hccCCCCHHHHHHHHHHh-cCCc
Confidence            99999999999999999999999999998765421       11111111   0   145678899999999988 8655


Q ss_pred             EEE
Q 018003          337 LKL  339 (362)
Q Consensus       337 ~~~  339 (362)
                      ...
T Consensus       173 ~~~  175 (240)
T TIGR02072       173 TLE  175 (240)
T ss_pred             EEE
Confidence            443

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.76  E-value=4e-17  Score=142.12  Aligned_cols=145  Identities=19%  Similarity=0.221  Sum_probs=111.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+.+.+...++.+|||+|||+|.++..+++++.  +|+|+|+|+.+++.++++.+..   ...++.+.++|+..++++ +
T Consensus        21 ~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         21 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAE---NLDNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             HHHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHc---CCCcceEEecChhhCCcC-C
Confidence            445555555678999999999999999999875  9999999999999999887765   134688899999887764 5


Q ss_pred             cceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEc-cCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      +||+|++..+++|++  +...+++++.++|||||.+++.+.. .+.. ..                ..+ ....++.+++
T Consensus        95 ~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~-~~----------------~~~-~~~~~~~~el  156 (197)
T PRK11207         95 EYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADY-PC----------------TVG-FPFAFKEGEL  156 (197)
T ss_pred             CcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCC-CC----------------CCC-CCCccCHHHH
Confidence            799999999999886  4568999999999999997655432 2211 00                001 1244788899


Q ss_pred             HHHHHHCCCEEEEE
Q 018003          325 KRIFRQFQLVVNLK  338 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~  338 (362)
                      .+.++  ||+++..
T Consensus       157 ~~~~~--~~~~~~~  168 (197)
T PRK11207        157 RRYYE--GWEMVKY  168 (197)
T ss_pred             HHHhC--CCeEEEe
Confidence            98887  8977654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.76  E-value=4e-17  Score=148.42  Aligned_cols=159  Identities=16%  Similarity=0.127  Sum_probs=117.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..++..+...++.+|||||||+|.++..+++..+..+++|+|+|+.|++.|+++        ..++.++.+|+..++ +.
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~--------~~~~~~~~~d~~~~~-~~   91 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR--------LPDCQFVEADIASWQ-PP   91 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh--------CCCCeEEECchhccC-CC
Confidence            456666666778899999999999999999887777999999999999999986        356889999998765 45


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH--Hhhhhcccccc-cccccCCHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--QVCFLDLKIVG-FSIPVLGFDD  323 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~s~~~  323 (362)
                      ++||+|+++.+++|++|+..+++++.++|||||.+++..+..... .....+..+.  ..+...+...+ ....+.+...
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  170 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDE-PSHVLMREVAENGPWEQNLPDRGARRAPLPPPHA  170 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCC-HHHHHHHHHHccCchHHHhccccccCcCCCCHHH
Confidence            689999999999999999999999999999999999976542111 1101111111  00110001011 0234567888


Q ss_pred             HHHHHHHCCCEE
Q 018003          324 LKRIFRQFQLVV  335 (362)
Q Consensus       324 l~~ll~~~Gf~~  335 (362)
                      +.+++.++|+.+
T Consensus       171 ~~~~l~~~g~~v  182 (258)
T PRK01683        171 YYDALAPAACRV  182 (258)
T ss_pred             HHHHHHhCCCce
Confidence            999999999854

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.75  E-value=7.3e-18  Score=133.09  Aligned_cols=106  Identities=28%  Similarity=0.391  Sum_probs=88.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p~~~~~fD~V~~~  255 (362)
                      |+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...  ....++.++++|+ ..... .+.||+|++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~   77 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE--GLSDRITFVQGDAEFDPDF-LEPFDLVICS   77 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT--TTTTTEEEEESCCHGGTTT-SSCEEEEEEC
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCCCeEEEECccccCccc-CCCCCEEEEC
Confidence            578999999999999999999656679999999999999999998433  2368999999999 33332 3569999999


Q ss_pred             c-cccCC---CCHHHHHHHHHhhccCCcEEEEEE
Q 018003          256 A-AIHCW---SSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       256 ~-vl~h~---~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      . +++++   .++..+++++.+.|+|||++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   78 GFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             SGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9 55544   345789999999999999999876

...

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.74  E-value=6.4e-17  Score=140.60  Aligned_cols=147  Identities=15%  Similarity=0.150  Sum_probs=110.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||+|||+|.++..+++++.  +|+|+|+|+.+++.++++.+..    ..++.+..+|+...+++ 
T Consensus        20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-   92 (195)
T TIGR00477        20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARE----NLPLRTDAYDINAAALN-   92 (195)
T ss_pred             HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHh----CCCceeEeccchhcccc-
Confidence            3455555555678999999999999999999875  9999999999999999887665    23477888888766654 


Q ss_pred             CcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++||+|++..+++|++  +...+++++.++|||||++++.+.......+                ...+ ....+++.++
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~----------------~~~~-~~~~~~~~el  155 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYP----------------CHMP-FSFTFKEDEL  155 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCC----------------CCCC-cCccCCHHHH
Confidence            5799999999999985  3468999999999999997766543221100                0001 2245889999


Q ss_pred             HHHHHHCCCEEEEEE
Q 018003          325 KRIFRQFQLVVNLKL  339 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~  339 (362)
                      .++++  +|+++...
T Consensus       156 ~~~f~--~~~~~~~~  168 (195)
T TIGR00477       156 RQYYA--DWELLKYN  168 (195)
T ss_pred             HHHhC--CCeEEEee
Confidence            99886  58766544

Part of a tellurite-reducing operon tehA and tehB

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.73  E-value=1.8e-16  Score=141.92  Aligned_cols=165  Identities=16%  Similarity=0.185  Sum_probs=121.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-C
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F  244 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~  244 (362)
                      ++.+...+...++.+|||+|||+|.++..+.+.+.  +++++|+++.+++.+++++...    ..++.++..|+...+ .
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALES----GLKIDYRQTTAEELAAE  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHc----CCceEEEecCHHHhhhh
Confidence            34555555556788999999999999999988764  8999999999999999887665    346788888887664 3


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHH-HHhhhhc-ccccccccccCCHH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-RQVCFLD-LKIVGFSIPVLGFD  322 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~s~~  322 (362)
                      ..++||+|++..+++|++++..+++.+.++|+|||.+++..+.....   ....... ....... ......+..+++.+
T Consensus       111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (233)
T PRK05134        111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPS  187 (233)
T ss_pred             cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHH
Confidence            45789999999999999999999999999999999999887653211   0000000 0000000 01111145678999


Q ss_pred             HHHHHHHHCCCEEEEEE
Q 018003          323 DLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~  339 (362)
                      ++.++++++||+++...
T Consensus       188 ~~~~~l~~~Gf~~v~~~  204 (233)
T PRK05134        188 ELAAWLRQAGLEVQDIT  204 (233)
T ss_pred             HHHHHHHHCCCeEeeee
Confidence            99999999999988664

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.73  E-value=3.3e-16  Score=145.82  Aligned_cols=164  Identities=15%  Similarity=0.054  Sum_probs=121.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||||||+|.++..++++.|..+++++|. +.+++.++++++..  +...+++++.+|+...+++.
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--gl~~rv~~~~~d~~~~~~~~  215 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GVADRMRGIAVDIYKESYPE  215 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--CccceEEEEecCccCCCCCC
Confidence            4556666666778999999999999999999998889999998 78999999888765  23467999999997666543


Q ss_pred             CcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                        +|+|++.+++|++.+.  ..++++++++|||||++++.+...+...  .+....+..... ..........+.+.+++
T Consensus       216 --~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~  290 (306)
T TIGR02716       216 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYIL-GAGMPFSVLGFKEQARY  290 (306)
T ss_pred             --CCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHH-HcccccccccCCCHHHH
Confidence              6999999999998765  4789999999999999999987654321  122222211111 00000002234558999


Q ss_pred             HHHHHHCCCEEEEE
Q 018003          325 KRIFRQFQLVVNLK  338 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~  338 (362)
                      .++|+++||+.++.
T Consensus       291 ~~ll~~aGf~~v~~  304 (306)
T TIGR02716       291 KEILESLGYKDVTM  304 (306)
T ss_pred             HHHHHHcCCCeeEe
Confidence            99999999988764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK06202 hypothetical protein; Provisional

Probab=99.72  E-value=1.8e-16  Score=141.72  Aligned_cols=160  Identities=14%  Similarity=0.069  Sum_probs=112.3

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f  249 (362)
                      ...++.+|||+|||+|.++..+++    .++..+++|+|+|+.|++.|+++...      .++.+...+...++..+++|
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~~l~~~~~~f  130 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR------PGVTFRQAVSDELVAEGERF  130 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc------CCCeEEEEecccccccCCCc
Confidence            334577999999999999888765    35556999999999999999886432      35677777777777777899


Q ss_pred             eEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh---cccccccccccCCHHHH
Q 018003          250 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL---DLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       250 D~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~l  324 (362)
                      |+|+++.++||++++  ..+++++.++++  |.+++.+...... ...-+..........   .......+..+++++++
T Consensus       131 D~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el  207 (232)
T PRK06202        131 DVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-AYALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAEL  207 (232)
T ss_pred             cEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-HHHHHHHHHHHhccCceeeccchHHHHhhcCHHHH
Confidence            999999999999986  479999999998  5666666554311 000000000000000   00111124678999999


Q ss_pred             HHHHHHCCCEEEEEEEece
Q 018003          325 KRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g~  343 (362)
                      .+++++ ||++...+.+..
T Consensus       208 ~~ll~~-Gf~~~~~~~~~~  225 (232)
T PRK06202        208 AALAPQ-GWRVERQWPFRY  225 (232)
T ss_pred             HHHhhC-CCeEEeccceee
Confidence            999999 999877665543

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.71  E-value=4.8e-16  Score=138.20  Aligned_cols=155  Identities=19%  Similarity=0.221  Sum_probs=116.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~  255 (362)
                      .+.+|||+|||+|.++..+++.+.  .++|+|+++.+++.+++++...   ...++.+..+|+.+.+.. .++||+|++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKD---PLLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHc---CCCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            477999999999999998888765  7999999999999999987765   112688899998776644 3789999999


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH-Hhhhhcc--cccccccccCCHHHHHHHHHHCC
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QVCFLDL--KIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      ++++|+.++..+++++.++|+|||.+++.+++.+.    ..+..... .......  ........+++..++.++++++|
T Consensus       120 ~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G  195 (224)
T TIGR01983       120 EVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTP----KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAG  195 (224)
T ss_pred             hHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc----hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcC
Confidence            99999999999999999999999999988765431    11111110 0000000  01111345779999999999999


Q ss_pred             CEEEEEEE
Q 018003          333 LVVNLKLF  340 (362)
Q Consensus       333 f~~v~~~~  340 (362)
                      |++++...
T Consensus       196 ~~i~~~~~  203 (224)
T TIGR01983       196 LRVKDVKG  203 (224)
T ss_pred             Ceeeeeee
Confidence            99887653

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.71  E-value=3.3e-16  Score=138.83  Aligned_cols=161  Identities=19%  Similarity=0.268  Sum_probs=115.4

Q ss_pred             HHHHHhhcC--CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          166 FELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       166 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .+.+.+++.  ..++.+|||+|||+|.++..+++.+.  +++|+|+|++|++.|++++...  ....++.+.++|+..++
T Consensus        42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~~~  117 (219)
T TIGR02021        42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGR--DVAGNVEFEVNDLLSLC  117 (219)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECChhhCC
Confidence            344555555  45678999999999999999988754  9999999999999999988654  11247999999998875


Q ss_pred             CCCCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          244 FASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                         ++||+|++..+++|++.  +..+++++.+++++++++.+...  .   ........+...+. ...... +..+++.
T Consensus       118 ---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~--~---~~~~~~~~~~~~~~-~~~~~~-~~~~~~~  187 (219)
T TIGR02021       118 ---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK--T---AWLAFLKMIGELFP-GSSRAT-SAYLHPM  187 (219)
T ss_pred             ---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC--c---hHHHHHHHHHhhCc-Cccccc-ceEEecH
Confidence               78999999999999864  46789999999987655543211  1   11111111111111 111112 4567899


Q ss_pred             HHHHHHHHHCCCEEEEEEE
Q 018003          322 DDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~  340 (362)
                      +++.++++++||+++....
T Consensus       188 ~~~~~~l~~~Gf~v~~~~~  206 (219)
T TIGR02021       188 TDLERALGELGWKIVREGL  206 (219)
T ss_pred             HHHHHHHHHcCceeeeeec
Confidence            9999999999998886643

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.70  E-value=4.2e-16  Score=135.52  Aligned_cols=161  Identities=14%  Similarity=0.134  Sum_probs=111.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-CC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-PF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-p~  244 (362)
                      +.+.+.+.  ++.+|||+|||+|.++..+++.. ...++|+|+++++++.+++          .++.++++|+.. + ++
T Consensus         5 ~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~----------~~~~~~~~d~~~~l~~~   71 (194)
T TIGR02081         5 ESILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA----------RGVNVIQGDLDEGLEAF   71 (194)
T ss_pred             HHHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH----------cCCeEEEEEhhhccccc
Confidence            45566655  36799999999999999887653 3578999999999999875          256788899865 4 46


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh--cc-cccccccccCCH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL--DL-KIVGFSIPVLGF  321 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~s~  321 (362)
                      ++++||+|++++++||++|+..+++++.|+++   .++++.|+.........+..+-......  .+ .....+.++++.
T Consensus        72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  148 (194)
T TIGR02081        72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTI  148 (194)
T ss_pred             CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcH
Confidence            77899999999999999999999999988765   4555555432100000000000000000  00 011115678999


Q ss_pred             HHHHHHHHHCCCEEEEEEEece
Q 018003          322 DDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +++.++++++||++++...+.+
T Consensus       149 ~~~~~ll~~~Gf~v~~~~~~~~  170 (194)
T TIGR02081       149 ADFEDLCGELNLRILDRAAFDV  170 (194)
T ss_pred             HHHHHHHHHCCCEEEEEEEecc
Confidence            9999999999999988777644

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.69  E-value=1.9e-15  Score=129.77  Aligned_cols=125  Identities=18%  Similarity=0.137  Sum_probs=103.4

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +.+|||+|||+|..+..++...+..+|+|+|+++.|++.|+++++..   ...+++++.+|+.+++. .++||+|++.. 
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~---~l~~i~~~~~d~~~~~~-~~~fDlV~~~~-  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL---GLKNVTVVHGRAEEFGQ-EEKFDVVTSRA-  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc---CCCCEEEEeccHhhCCC-CCCccEEEEcc-
Confidence            78999999999999999988777789999999999999999998876   13459999999988876 77899999875 


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                         +.++..+++++.++|||||++++....                               .....+..+.+..|+.+.+
T Consensus       121 ---~~~~~~~l~~~~~~LkpGG~lv~~~~~-------------------------------~~~~~l~~~~~~~~~~~~~  166 (187)
T PRK00107        121 ---VASLSDLVELCLPLLKPGGRFLALKGR-------------------------------DPEEEIAELPKALGGKVEE  166 (187)
T ss_pred             ---ccCHHHHHHHHHHhcCCCeEEEEEeCC-------------------------------ChHHHHHHHHHhcCceEee
Confidence               467889999999999999999977532                               1233577788888997666


Q ss_pred             EEEe
Q 018003          338 KLFY  341 (362)
Q Consensus       338 ~~~~  341 (362)
                      .+.+
T Consensus       167 ~~~~  170 (187)
T PRK00107        167 VIEL  170 (187)
T ss_pred             eEEE
Confidence            5544

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.68  E-value=8.2e-16  Score=129.94  Aligned_cols=159  Identities=15%  Similarity=0.139  Sum_probs=122.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+...+...+..+|.|+|||+|..+..++++.|+..++|+|-|++|++.|+++        .++..|..+|+..+. +.
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r--------lp~~~f~~aDl~~w~-p~   90 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR--------LPDATFEEADLRTWK-PE   90 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh--------CCCCceecccHhhcC-CC
Confidence            456777788888999999999999999999999999999999999999999887        688999999998875 46


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHH--hhhhcccccc-cccccCCHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ--VCFLDLKIVG-FSIPVLGFDD  323 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~s~~~  323 (362)
                      ..+|+++++.+|++++|-..+|..+...|.|||+|.+..|..-.. +....+...-.  .+...+...+ ......+...
T Consensus        91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-psH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~  169 (257)
T COG4106          91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-PSHRLMRETADEAPFAQELGGRGLTRAPLPSPAA  169 (257)
T ss_pred             CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-hhHHHHHHHHhcCchhhhhCccccccCCCCCHHH
Confidence            789999999999999999999999999999999999988865322 11112222111  0110001100 1355678888


Q ss_pred             HHHHHHHCCCEE
Q 018003          324 LKRIFRQFQLVV  335 (362)
Q Consensus       324 l~~ll~~~Gf~~  335 (362)
                      ..++|...+-++
T Consensus       170 Yy~lLa~~~~rv  181 (257)
T COG4106         170 YYELLAPLACRV  181 (257)
T ss_pred             HHHHhCccccee
Confidence            999998776643

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.68  E-value=1.3e-15  Score=140.46  Aligned_cols=136  Identities=17%  Similarity=0.177  Sum_probs=106.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++++|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++++..    ..++.+...|+...++ +++||+|++..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~----~l~v~~~~~D~~~~~~-~~~fD~I~~~~  192 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKE----NLNIRTGLYDINSASI-QEEYDFILSTV  192 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEechhcccc-cCCccEEEEcc
Confidence            356999999999999999999875  9999999999999999988765    3478888999877665 67899999999


Q ss_pred             cccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003          257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV  334 (362)
Q Consensus       257 vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~  334 (362)
                      +++|++  +...+++++.++|+|||++++..+.......                ...+ ....+++.+++++++.  |+
T Consensus       193 vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~----------------~~~p-~~~~~~~~el~~~~~~--~~  253 (287)
T PRK12335        193 VLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP----------------CPMP-FSFTFKEGELKDYYQD--WE  253 (287)
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC----------------CCCC-CCcccCHHHHHHHhCC--CE
Confidence            999986  4468999999999999998776543221100                0001 2455889999999864  87


Q ss_pred             EEEE
Q 018003          335 VNLK  338 (362)
Q Consensus       335 ~v~~  338 (362)
                      +++.
T Consensus       254 i~~~  257 (287)
T PRK12335        254 IVKY  257 (287)
T ss_pred             EEEE
Confidence            7654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.68  E-value=2.8e-15  Score=138.64  Aligned_cols=166  Identities=16%  Similarity=0.159  Sum_probs=109.3

Q ss_pred             HHHHHHHhhcCC---CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC--CCCCCEEEEEec
Q 018003          164 KEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRAD  238 (362)
Q Consensus       164 ~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d  238 (362)
                      ..++.+.+++..   .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++......  ....++.+..+|
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D  205 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND  205 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc
Confidence            344555555543   2578999999999999999998865  999999999999999998765310  012467888888


Q ss_pred             CCCCCCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccc
Q 018003          239 ISRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSI  316 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (362)
                      +..+   +++||+|++..+++|+++..  .+++.+.+ +.+||.++...+.  .  ....++..+.+.+. ...... ..
T Consensus       206 l~~l---~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~--~--~~~~~l~~~g~~~~-g~~~~~-r~  275 (315)
T PLN02585        206 LESL---SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPK--T--LYYDILKRIGELFP-GPSKAT-RA  275 (315)
T ss_pred             hhhc---CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCc--c--hHHHHHHHHHhhcC-CCCcCc-ee
Confidence            8654   47899999999999997653  45666665 4566554422221  1  11112222222111 000001 12


Q ss_pred             ccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          317 PVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       317 ~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      .++++++++++|+++||++.+....
T Consensus       276 y~~s~eel~~lL~~AGf~v~~~~~~  300 (315)
T PLN02585        276 YLHAEADVERALKKAGWKVARREMT  300 (315)
T ss_pred             eeCCHHHHHHHHHHCCCEEEEEEEe
Confidence            3568999999999999998765433

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.67  E-value=1.8e-15  Score=144.22  Aligned_cols=157  Identities=18%  Similarity=0.139  Sum_probs=117.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+++++.|+++.+.      .++.+...|...+   
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~------l~v~~~~~D~~~l---  225 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAG------LPVEIRLQDYRDL---  225 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcc------CeEEEEECchhhc---
Confidence            4556677777789999999999999999988764 35999999999999999998643      2578888888765   


Q ss_pred             CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCC-cchhhhHHHHHhhhhcccccccccccCCHH
Q 018003          246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                      +++||+|++..+++|+.+  +..+++++.++|||||.+++.+...+... ....|+.+        +.. + ...+.+..
T Consensus       226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~--------yif-p-~g~lps~~  295 (383)
T PRK11705        226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINK--------YIF-P-NGCLPSVR  295 (383)
T ss_pred             CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCcee--------eec-C-CCcCCCHH
Confidence            468999999999999964  46899999999999999999877544211 11112111        111 2 23456788


Q ss_pred             HHHHHHHHCCCEEEEEEEece
Q 018003          323 DLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      ++...++ .||++.+...++.
T Consensus       296 ~i~~~~~-~~~~v~d~~~~~~  315 (383)
T PRK11705        296 QIAQASE-GLFVMEDWHNFGA  315 (383)
T ss_pred             HHHHHHH-CCcEEEEEecChh
Confidence            8888766 5898777655443

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.67  E-value=1.6e-17  Score=128.30  Aligned_cols=97  Identities=27%  Similarity=0.398  Sum_probs=66.0

Q ss_pred             EEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEeccccc
Q 018003          182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIH  259 (362)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~~vl~  259 (362)
                      ||||||+|.++..+.+..+..+++|+|+|+.|++.+++++....   ..+......+..+..  ...++||+|++..++|
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~   77 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYDPPESFDLVVASNVLH   77 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CCC----SEEEEE-TTS
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcccccccceehhhhhHh
Confidence            79999999999999999777799999999999999988887751   233344444433322  1125899999999999


Q ss_pred             CCCCHHHHHHHHHhhccCCcEE
Q 018003          260 CWSSPSTGVAEISRVLRPGGVF  281 (362)
Q Consensus       260 h~~d~~~~l~~i~r~LkpgG~l  281 (362)
                      |++++..+++++.++|||||+|
T Consensus        78 ~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   78 HLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             --S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhhhHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.67  E-value=3.9e-15  Score=130.66  Aligned_cols=138  Identities=19%  Similarity=0.206  Sum_probs=102.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC---------CCCCCCEEEEEecCCCCCCC-
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRADISRLPFA-  245 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~~d~~~~p~~-  245 (362)
                      .++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         -....+++++++|+..++.. 
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            3578999999999999999999987  99999999999998644321100         00134789999999887643 


Q ss_pred             CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      .+.||.|+...+++|++..  ...++.+.++|||||++++.+...+....                  .+ ....++.++
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~------------------~g-pp~~~~~~e  171 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM------------------AG-PPFSVSPAE  171 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC------------------CC-cCCCCCHHH
Confidence            4679999999999999643  36899999999999998888775431100                  01 234588999


Q ss_pred             HHHHHHHCCCEE
Q 018003          324 LKRIFRQFQLVV  335 (362)
Q Consensus       324 l~~ll~~~Gf~~  335 (362)
                      +++++.. +|.+
T Consensus       172 L~~~f~~-~~~i  182 (213)
T TIGR03840       172 VEALYGG-HYEI  182 (213)
T ss_pred             HHHHhcC-CceE
Confidence            9998863 4543

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.67  E-value=1.6e-16  Score=123.19  Aligned_cols=95  Identities=32%  Similarity=0.514  Sum_probs=79.9

Q ss_pred             EEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec-c
Q 018003          181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-A  256 (362)
Q Consensus       181 vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~-~  256 (362)
                      |||+|||+|..+..+.+..   +..+++|+|+|++|++.++++....    ..+++++++|+.++++.+++||+|++. .
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----~~~~~~~~~D~~~l~~~~~~~D~v~~~~~   76 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----GPKVRFVQADARDLPFSDGKFDLVVCSGL   76 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----TTTSEEEESCTTCHHHHSSSEEEEEE-TT
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----CCceEEEECCHhHCcccCCCeeEEEEcCC
Confidence            7999999999999999874   3469999999999999999998765    458999999999999888899999995 5


Q ss_pred             cccCCCCH--HHHHHHHHhhccCCc
Q 018003          257 AIHCWSSP--STGVAEISRVLRPGG  279 (362)
Q Consensus       257 vl~h~~d~--~~~l~~i~r~LkpgG  279 (362)
                      +++|+.+.  ..+++++.++|||||
T Consensus        77 ~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   77 SLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             GGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             ccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            59998654  589999999999998

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.66  E-value=7.8e-15  Score=125.87  Aligned_cols=139  Identities=14%  Similarity=0.165  Sum_probs=111.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+...+...++.+|||+|||+|.++..+++.++  +++|+|+++.+++.++++++..    ..++.++.+|....+  .+
T Consensus        10 ~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~--~~   81 (179)
T TIGR00537        10 LLEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN----NVGLDVVMTDLFKGV--RG   81 (179)
T ss_pred             HHHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc----CCceEEEEccccccc--CC
Confidence            444555555567999999999999999999886  8999999999999999988765    346888999986654  45


Q ss_pred             cceEEEecccccCCCC---------------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh
Q 018003          248 SIDAVHAGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF  306 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d---------------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~  306 (362)
                      +||+|+++..+++.++                     ...+++++.++|||||.+++..+...                 
T Consensus        82 ~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~-----------------  144 (179)
T TIGR00537        82 KFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN-----------------  144 (179)
T ss_pred             cccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC-----------------
Confidence            8999999988776653                     24579999999999999998765321                 


Q ss_pred             hcccccccccccCCHHHHHHHHHHCCCEEEEEEEecee
Q 018003          307 LDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHI  344 (362)
Q Consensus       307 ~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~  344 (362)
                                   ...++..++++.||+.......|.+
T Consensus       145 -------------~~~~~~~~l~~~gf~~~~~~~~~~~  169 (179)
T TIGR00537       145 -------------GEPDTFDKLDERGFRYEIVAERGLF  169 (179)
T ss_pred             -------------ChHHHHHHHHhCCCeEEEEEEeecC
Confidence                         2456788999999988777777765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.65  E-value=1.4e-14  Score=125.24  Aligned_cols=142  Identities=16%  Similarity=0.058  Sum_probs=109.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+...+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.++++++..   ...++.++.+|+.. +
T Consensus        18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~---~~~~i~~~~~d~~~-~   93 (187)
T PRK08287         18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF---GCGNIDIIPGEAPI-E   93 (187)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh---CCCCeEEEecCchh-h
Confidence            3334455667666788999999999999999998887789999999999999999988765   12468899988742 3


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      + .++||+|++....++   ...+++++.++|+|||++++.....                              -+..+
T Consensus        94 ~-~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~  139 (187)
T PRK08287         94 L-PGKADAIFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHS  139 (187)
T ss_pred             c-CcCCCEEEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHH
Confidence            3 357999999876543   4678999999999999998864321                              12346


Q ss_pred             HHHHHHHCCCEEEEEEEece
Q 018003          324 LKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +.+++++.||+.++......
T Consensus       140 ~~~~l~~~g~~~~~~~~~~~  159 (187)
T PRK08287        140 ALAHLEKCGVSELDCVQLQV  159 (187)
T ss_pred             HHHHHHHCCCCcceEEEEEE
Confidence            77899999997666544443

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.64  E-value=4.6e-15  Score=146.52  Aligned_cols=148  Identities=18%  Similarity=0.211  Sum_probs=114.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC--CCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~p~  244 (362)
                      ..+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.|++.+++....     ..++.++++|+.  .+++
T Consensus        27 ~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~-----~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         27 PEILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGH-----YKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             hHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhcc-----CCceEEEEecccccccCC
Confidence            4556666666678999999999999999998865  999999999999987664221     468899999996  4677


Q ss_pred             CCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHH
Q 018003          245 ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                      ++++||+|++..+++|+++.  ..+++++.++|||||++++.+..........    .         .. . ...+.+..
T Consensus       100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~----~---------~~-~-~~~~~~~~  164 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSK----R---------KN-N-PTHYREPR  164 (475)
T ss_pred             CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCccc----c---------cC-C-CCeecChH
Confidence            78899999999999999874  6899999999999999999875432110000    0         00 1 23445678


Q ss_pred             HHHHHHHHCCCEEE
Q 018003          323 DLKRIFRQFQLVVN  336 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v  336 (362)
                      .|.+++.++||...
T Consensus       165 ~~~~~f~~~~~~~~  178 (475)
T PLN02336        165 FYTKVFKECHTRDE  178 (475)
T ss_pred             HHHHHHHHheeccC
Confidence            99999999999654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.64  E-value=8.8e-15  Score=130.60  Aligned_cols=163  Identities=17%  Similarity=0.152  Sum_probs=110.7

Q ss_pred             HHHHHhhcCC---CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          166 FELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       166 ~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      .+.+..++..   .++.+|||+|||+|.++..+++.+.  .++|+|+|+.+++.|++++...  ....++.+..+|+.  
T Consensus        49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~--  122 (230)
T PRK07580         49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEA--GLAGNITFEVGDLE--  122 (230)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc--CCccCcEEEEcCch--
Confidence            3444444432   4578999999999999999998875  7999999999999999987664  11247889999854  


Q ss_pred             CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003          243 PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                       ..+++||+|++..+++|++++  ..+++++.+++++++. +...+. .   ........+...+. ...... +...++
T Consensus       123 -~~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~-i~~~~~-~---~~~~~~~~l~~~~~-~~~~~~-~~~~~~  194 (230)
T PRK07580        123 -SLLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLI-FTFAPY-T---PLLALLHWIGGLFP-GPSRTT-RIYPHR  194 (230)
T ss_pred             -hccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEE-EEECCc-c---HHHHHHHHhccccC-CccCCC-CccccC
Confidence             345789999999999998755  4678888887654443 322211 1   11111111111111 001111 356688


Q ss_pred             HHHHHHHHHHCCCEEEEEEEec
Q 018003          321 FDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      ..++.++++++||++.+.....
T Consensus       195 ~~~~~~~l~~~Gf~~~~~~~~~  216 (230)
T PRK07580        195 EKGIRRALAAAGFKVVRTERIS  216 (230)
T ss_pred             HHHHHHHHHHCCCceEeeeecc
Confidence            9999999999999988765543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.64  E-value=2e-15  Score=126.99  Aligned_cols=144  Identities=15%  Similarity=0.142  Sum_probs=100.8

Q ss_pred             EEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          205 VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       205 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      +|+|+|++|++.|+++..........+++++++|++++|+++++||+|++..+++|++|+..++++++|+|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            48999999999998876532111134799999999999999999999999999999999999999999999999999999


Q ss_pred             EEccCCCCcchhhhHHHH--------Hhh---hhccccc-ccccccCCHHHHHHHHHHCCCEEEEEEE--eceeEEEEe
Q 018003          285 TYIVDGPFNLIPFSRLLR--------QVC---FLDLKIV-GFSIPVLGFDDLKRIFRQFQLVVNLKLF--YGHIQHYIV  349 (362)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~--------~~~---~~~~~~~-~~~~~~~s~~~l~~ll~~~Gf~~v~~~~--~g~~~~~~~  349 (362)
                      ++...... .......+.        ...   ...+.+. .....+.+++++.++|+++||+.+....  +|....+++
T Consensus        81 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~  158 (160)
T PLN02232         81 DFNKSNQS-VTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVA  158 (160)
T ss_pred             ECCCCChH-HHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEe
Confidence            87653221 110000000        000   0011111 0024667999999999999998765544  344444443

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.63  E-value=1.7e-14  Score=125.94  Aligned_cols=102  Identities=13%  Similarity=0.185  Sum_probs=85.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..+.+..+..+++|+|+|+.|++.|+++        ..++.+.++|+.. |+++++||+|++..
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~--------~~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY--------LPNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh--------CCCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            46789999999999999998875567999999999999999885        3457788999887 88889999999999


Q ss_pred             cccCCC--CHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          257 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       257 vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +++|++  +...+++++.|++  ++.+++.+...+
T Consensus       114 vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~  146 (204)
T TIGR03587       114 VLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP  146 (204)
T ss_pred             hhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence            999995  2357888888887  567777776543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.62  E-value=2e-14  Score=123.19  Aligned_cols=101  Identities=17%  Similarity=0.175  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..++..++..+|+|+|+|+.|++.++++++..   ...++.++++|+..++ ..++||+|++..
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~---~~~~i~~i~~d~~~~~-~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL---GLNNVEIVNGRAEDFQ-HEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh---CCCCeEEEecchhhcc-ccCCccEEEehh
Confidence            378999999999999999888777779999999999999999887765   1347999999998874 357899999876


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                          +.+...+++.+.++|+|||.+++..
T Consensus       118 ----~~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       118 ----LASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             ----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence                3456678899999999999999763

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK06922 hypothetical protein; Provisional

Probab=99.62  E-value=4.5e-15  Score=146.29  Aligned_cols=107  Identities=22%  Similarity=0.365  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~  254 (362)
                      ++.+|||+|||+|.++..+++..++.+++|+|+|+.|++.|+++....    ..++.++++|+..+|  +++++||+|++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----g~~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----GRSWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----CCCeEEEEcchHhCccccCCCCEEEEEE
Confidence            578999999999999999988878889999999999999999876554    357888999998887  77899999999


Q ss_pred             cccccCCC-------------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          255 GAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       255 ~~vl~h~~-------------d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +.++||+.             ++..+++++.++|||||.+++.+..
T Consensus       494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v  539 (677)
T PRK06922        494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI  539 (677)
T ss_pred             chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            99998762             4578999999999999999998754

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.61  E-value=3.8e-14  Score=124.87  Aligned_cols=141  Identities=16%  Similarity=0.192  Sum_probs=102.6

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC---------CCCCCCEEEEEecCCCCCC
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLLVRADISRLPF  244 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~~d~~~~p~  244 (362)
                      ...++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         -....++.+.++|+..++.
T Consensus        34 ~~~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~  111 (218)
T PRK13255         34 ALPAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTA  111 (218)
T ss_pred             CCCCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCc
Confidence            334578999999999999999999987  99999999999998753211100         0013578999999988753


Q ss_pred             C-CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          245 A-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       245 ~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      . .+.||.|+...+++|++..  ...++.+.++|||||++++.+...... .                 ..+ ....++.
T Consensus       112 ~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~-~-----------------~~g-Pp~~~~~  172 (218)
T PRK13255        112 ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE-E-----------------LAG-PPFSVSD  172 (218)
T ss_pred             ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCc-c-----------------CCC-CCCCCCH
Confidence            3 3589999999999999633  478999999999999866655543211 0                 001 2246899


Q ss_pred             HHHHHHHHHCCCEEE
Q 018003          322 DDLKRIFRQFQLVVN  336 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v  336 (362)
                      +++++++.. +|.+.
T Consensus       173 ~el~~~~~~-~~~i~  186 (218)
T PRK13255        173 EEVEALYAG-CFEIE  186 (218)
T ss_pred             HHHHHHhcC-CceEE
Confidence            999999864 25443

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.61  E-value=1.9e-14  Score=115.34  Aligned_cols=114  Identities=23%  Similarity=0.186  Sum_probs=92.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~  245 (362)
                      ..+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..   ...++.++.+|+.. ++..
T Consensus         9 ~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~   85 (124)
T TIGR02469         9 ALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF---GVSNIVIVEGDAPEALEDS   85 (124)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh---CCCceEEEeccccccChhh
Confidence            4455566666678999999999999999999876679999999999999999987765   23578888888765 3333


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .++||+|++....++   ...+++++.+.|||||.+++...
T Consensus        86 ~~~~D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        86 LPEPDRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             cCCCCEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence            468999999776543   45889999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK04266 fibrillarin; Provisional

Probab=99.60  E-value=3.9e-14  Score=125.31  Aligned_cols=141  Identities=11%  Similarity=0.116  Sum_probs=102.1

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCC
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASS  247 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~  247 (362)
                      .+...++.+|||+|||+|.++..+++......|+|+|+++.|++.+.++++..     .++.++.+|+...    ++ .+
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-----~nv~~i~~D~~~~~~~~~l-~~  140 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-----KNIIPILADARKPERYAHV-VE  140 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-----CCcEEEECCCCCcchhhhc-cc
Confidence            46777899999999999999999998754468999999999999887765543     5789999998642    22 25


Q ss_pred             cceEEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          248 SIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      +||+|++.     +.+|.   .+++++.++|||||.++++.+...-.     +            ...  +...+  ++.
T Consensus       141 ~~D~i~~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d-----~------------~~~--~~~~~--~~~  194 (226)
T PRK04266        141 KVDVIYQD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSID-----V------------TKD--PKEIF--KEE  194 (226)
T ss_pred             cCCEEEEC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccccc-----C------------cCC--HHHHH--HHH
Confidence            69999853     33443   46899999999999999975532100     0            000  11111  344


Q ss_pred             HHHHHHCCCEEEEEEEecee
Q 018003          325 KRIFRQFQLVVNLKLFYGHI  344 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g~~  344 (362)
                      .++++++||+.++....+..
T Consensus       195 ~~~l~~aGF~~i~~~~l~p~  214 (226)
T PRK04266        195 IRKLEEGGFEILEVVDLEPY  214 (226)
T ss_pred             HHHHHHcCCeEEEEEcCCCC
Confidence            59999999999988776533

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.59  E-value=1.3e-14  Score=126.89  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=90.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCC--CCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP--FASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p--~~~~~fD~V~  253 (362)
                      ++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...   ...++.++++|+ +.++  +++++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~---~~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE---GLTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc---CCCCEEEEecCHHHHHHHHcCccccceEE
Confidence            467999999999999999988877779999999999999999988765   136799999999 7666  6778999999


Q ss_pred             ecccccCCC--------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~~--------d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++....+..        ....+++++.++|||||.+++.+..
T Consensus       117 ~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~  158 (202)
T PRK00121        117 LNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW  158 (202)
T ss_pred             EECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence            876543222        1367899999999999999998754

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.58  E-value=2.9e-14  Score=121.79  Aligned_cols=143  Identities=17%  Similarity=0.220  Sum_probs=102.7

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCc
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~  248 (362)
                      +.+.+...+++++||+|||.|+.+.+|+++|.  .|+++|.|+..++.+++..+..    .-.+...+.|+....++ +.
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~----~l~i~~~~~Dl~~~~~~-~~   94 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEE----GLDIRTRVADLNDFDFP-EE   94 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHT----T-TEEEEE-BGCCBS-T-TT
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhc----CceeEEEEecchhcccc-CC
Confidence            44445555678999999999999999999998  9999999999999998877666    45699999999888765 67


Q ss_pred             ceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          249 IDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      ||+|++..+++|++.+  ..+++.+...++|||++++.+......  . +             ...+ ....+.+.++..
T Consensus        95 yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d--~-p-------------~~~~-~~f~~~~~EL~~  157 (192)
T PF03848_consen   95 YDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPD--Y-P-------------CPSP-FPFLLKPGELRE  157 (192)
T ss_dssp             EEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SS--S----------------SS---S--B-TTHHHH
T ss_pred             cCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCC--C-C-------------CCCC-CCcccCHHHHHH
Confidence            9999999999998644  478999999999999999877643211  0 0             0001 223456678888


Q ss_pred             HHHHCCCEEEE
Q 018003          327 IFRQFQLVVNL  337 (362)
Q Consensus       327 ll~~~Gf~~v~  337 (362)
                      .+.  ||++++
T Consensus       158 ~y~--dW~il~  166 (192)
T PF03848_consen  158 YYA--DWEILK  166 (192)
T ss_dssp             HTT--TSEEEE
T ss_pred             HhC--CCeEEE
Confidence            875  687654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.58  E-value=1.7e-14  Score=121.70  Aligned_cols=141  Identities=14%  Similarity=0.187  Sum_probs=103.2

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD  250 (362)
                      ..++...-.++||+|||.|.++..|+.+..  +++++|+|+.+++.|+++++..     +++.+.++|+.+. .+.++||
T Consensus        37 aaLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~-----~~V~~~~~dvp~~-~P~~~FD  108 (201)
T PF05401_consen   37 AALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGL-----PHVEWIQADVPEF-WPEGRFD  108 (201)
T ss_dssp             HHHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT------SSEEEEES-TTT----SS-EE
T ss_pred             HhcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCC-----CCeEEEECcCCCC-CCCCCee
Confidence            346666667999999999999999999975  9999999999999999998875     7999999999775 3678999


Q ss_pred             EEEecccccCCCCH---HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003          251 AVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI  327 (362)
Q Consensus       251 ~V~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l  327 (362)
                      +|++..+++++.+.   ..+++.+...|+|||.+++.++...       .-+    . +         .+.+..+++..+
T Consensus       109 LIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-------~c~----~-w---------gh~~ga~tv~~~  167 (201)
T PF05401_consen  109 LIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-------NCR----R-W---------GHAAGAETVLEM  167 (201)
T ss_dssp             EEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-------HHH----H-T---------T-S--HHHHHHH
T ss_pred             EEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-------ccc----c-c---------CcccchHHHHHH
Confidence            99999999999764   4689999999999999999876311       000    1 1         233588899999


Q ss_pred             HHHCCCEEEEEEEe
Q 018003          328 FRQFQLVVNLKLFY  341 (362)
Q Consensus       328 l~~~Gf~~v~~~~~  341 (362)
                      |++. |+.++....
T Consensus       168 ~~~~-~~~~~~~~~  180 (201)
T PF05401_consen  168 LQEH-LTEVERVEC  180 (201)
T ss_dssp             HHHH-SEEEEEEEE
T ss_pred             HHHH-hhheeEEEE
Confidence            9875 655555443

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.58  E-value=5.7e-14  Score=123.06  Aligned_cols=113  Identities=19%  Similarity=0.168  Sum_probs=92.1

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ....+.+.+...++.+|||+|||+|..+..+++.. ...+|+++|+++++++.|++++...  +...++.++.+|+....
T Consensus        60 ~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--~~~~~v~~~~~d~~~~~  137 (205)
T PRK13944         60 MVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--GYWGVVEVYHGDGKRGL  137 (205)
T ss_pred             HHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEEECCcccCC
Confidence            34667777777788999999999999998888763 3458999999999999999988765  11246899999997654


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ...++||+|++..+++|++      +++.+.|+|||++++..
T Consensus       138 ~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        138 EKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             ccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence            4567899999999988874      46889999999998754

>PRK14968 putative methyltransferase; Provisional

Probab=99.57  E-value=1.9e-13  Score=118.01  Aligned_cols=138  Identities=18%  Similarity=0.272  Sum_probs=102.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||+|||+|.++..++..+  .+++|+|+|+.+++.+++++... +....++.++.+|+.. ++.+
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~-~~~~~~~~~~~~d~~~-~~~~   88 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLN-NIRNNGVEVIRSDLFE-PFRG   88 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHc-CCCCcceEEEeccccc-cccc
Confidence            444555544667899999999999999999885  49999999999999999988765 1111128888998865 3445


Q ss_pred             CcceEEEecccccCCC---------------------CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhh
Q 018003          247 SSIDAVHAGAAIHCWS---------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVC  305 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~---------------------d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~  305 (362)
                      .+||+|+++..+.+..                     ....+++++.++|||||.+++..+..                 
T Consensus        89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~-----------------  151 (188)
T PRK14968         89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL-----------------  151 (188)
T ss_pred             cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc-----------------
Confidence            5899999876543211                     13467999999999999998765321                 


Q ss_pred             hhcccccccccccCCHHHHHHHHHHCCCEEEEE
Q 018003          306 FLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       306 ~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~  338 (362)
                                   ...+.+.++++++||++...
T Consensus       152 -------------~~~~~l~~~~~~~g~~~~~~  171 (188)
T PRK14968        152 -------------TGEDEVLEYLEKLGFEAEVV  171 (188)
T ss_pred             -------------CCHHHHHHHHHHCCCeeeee
Confidence                         23456889999999976543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.56  E-value=2.1e-13  Score=123.23  Aligned_cols=140  Identities=19%  Similarity=0.280  Sum_probs=102.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+....  .++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.|+++++.+  .....+.+..+        
T Consensus       110 l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~--~~~~~~~~~~~--------  176 (250)
T PRK00517        110 LEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN--GVELNVYLPQG--------  176 (250)
T ss_pred             HHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc--CCCceEEEccC--------
Confidence            34444433  3578999999999999988887765 36999999999999999988765  11122332222        


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +.+||+|+++...+.   ...+++++.++|||||.++++....                              ...+.+.
T Consensus       177 ~~~fD~Vvani~~~~---~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~  223 (250)
T PRK00517        177 DLKADVIVANILANP---LLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVL  223 (250)
T ss_pred             CCCcCEEEEcCcHHH---HHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHH
Confidence            226999998754322   3577899999999999999875431                              1235688


Q ss_pred             HHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003          326 RIFRQFQLVVNLKLFYGHIQHYIVKI  351 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g~~~~~~~~k  351 (362)
                      ..+++.||+.++....+.+..+..+|
T Consensus       224 ~~l~~~Gf~~~~~~~~~~W~~~~~~~  249 (250)
T PRK00517        224 EAYEEAGFTLDEVLERGEWVALVGKK  249 (250)
T ss_pred             HHHHHCCCEEEEEEEeCCEEEEEEEe
Confidence            89999999999888887776666665

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.56  E-value=3e-14  Score=129.43  Aligned_cols=109  Identities=15%  Similarity=0.193  Sum_probs=85.2

Q ss_pred             CCCeEEEEcCccch----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHhh------cC-----------C----
Q 018003          177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQQ------ES-----------N----  226 (362)
Q Consensus       177 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~gvD~s~~~~~~a~~~~~~------~~-----------~----  226 (362)
                      ++.+|+|+|||+|.    ++..+.+.++     ..+++|+|+|+.|++.|++.+-.      ..           +    
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    3444544432     46899999999999999985310      00           0    


Q ss_pred             ---CCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEE
Q 018003          227 ---FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       227 ---~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~  285 (362)
                         ....++.|.++|+...+++.++||+|+|.++++|++++.  .+++++.++|+|||+|++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence               001368999999999887788999999999999997554  79999999999999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.55  E-value=3.6e-13  Score=117.44  Aligned_cols=118  Identities=17%  Similarity=0.187  Sum_probs=93.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +........+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.++++++..  +...++.++.+|+.+.
T Consensus        27 ~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--g~~~~v~~~~~d~~~~  104 (198)
T PRK00377         27 EIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--GVLNNIVLIKGEAPEI  104 (198)
T ss_pred             HHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--CCCCCeEEEEechhhh
Confidence            33344456777778999999999999999888765 45569999999999999999988765  1135789999998663


Q ss_pred             -CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                       +...+.||+|++..   ...++..+++++.++|||||++++...
T Consensus       105 l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        105 LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence             33346899999854   235778899999999999999997543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.54  E-value=1.6e-13  Score=120.76  Aligned_cols=113  Identities=17%  Similarity=0.177  Sum_probs=92.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      .....+.+.+...++.+|||||||+|.++..+++. +...+|+++|+++++++.++++++..   ...++.++.+|....
T Consensus        63 ~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~---g~~~v~~~~gd~~~~  139 (212)
T PRK13942         63 HMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL---GYDNVEVIVGDGTLG  139 (212)
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCcccC
Confidence            33466777777788999999999999999888876 34469999999999999999998875   245799999998766


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ....+.||+|++....++++      +.+.+.|||||++++..
T Consensus       140 ~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        140 YEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence            55668899999988776652      45677899999998854

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.53  E-value=2.9e-13  Score=127.31  Aligned_cols=119  Identities=19%  Similarity=0.240  Sum_probs=95.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~  244 (362)
                      +.+.+.+....+..+||||||+|.++..+++..|+..++|+|+++.+++.+.+++...   ...++.++++|+..+  .+
T Consensus       112 ~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~---gL~NV~~i~~DA~~ll~~~  188 (390)
T PRK14121        112 DNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELL---NLKNLLIINYDARLLLELL  188 (390)
T ss_pred             HHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHhhhhC
Confidence            3455555555667999999999999999999998889999999999999999988765   246899999998654  46


Q ss_pred             CCCcceEEEecccccCCCCH------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          245 ASSSIDAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +++++|.|++++...|...+      ..+++++.|+|+|||.+.+.|-..
T Consensus       189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            78999999975432222111      579999999999999999988543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.53  E-value=5.7e-14  Score=122.04  Aligned_cols=108  Identities=18%  Similarity=0.158  Sum_probs=88.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcceEEEe
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHA  254 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~fD~V~~  254 (362)
                      ..+|||||||+|.++..+++..++.+++|+|+++.+++.|++++...   ...++.++++|+..++   ++++++|.|++
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~---~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~   93 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL---GLKNLHVLCGDANELLDKFFPDGSLSKVFL   93 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh---CCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence            56999999999999999999988889999999999999999887765   2358999999997653   45668999998


Q ss_pred             cccccCCCCH--------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          255 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       255 ~~vl~h~~d~--------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +....+....        ..+++++.++|||||.|++.+...
T Consensus        94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            7653332211        468999999999999999987543

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.53  E-value=1.4e-13  Score=124.93  Aligned_cols=107  Identities=10%  Similarity=0.115  Sum_probs=88.7

Q ss_pred             CCCeEEEEcCccchHHHHH--HHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIF--AKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l--~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ++.+|+|||||.|.++..+  +...++++++|+|+++++++.|++.+... .+...++.|..+|+.+.+-..+.||+|++
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-PDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-cCccCCcEEEECchhhcccccCCcCEEEE
Confidence            6789999999988554443  34567789999999999999999988542 12356899999999876433578999999


Q ss_pred             cccccCC--CCHHHHHHHHHhhccCCcEEEEEE
Q 018003          255 GAAIHCW--SSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       255 ~~vl~h~--~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      . +++++  .++.++++++.+.|+|||.+++-.
T Consensus       202 ~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        202 A-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             e-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            9 99988  689999999999999999999876

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.53  E-value=2.7e-13  Score=111.69  Aligned_cols=131  Identities=22%  Similarity=0.321  Sum_probs=106.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      ..+|||+|||+|.++..|++.+.....+|+|.|+.+++.|+...++.  .....++|.+.|+....+..+.||+|+--..
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~--~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT  145 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERD--GFSNEIRFQQLDITDPDFLSGQFDLVLDKGT  145 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhc--CCCcceeEEEeeccCCcccccceeEEeecCc
Confidence            34999999999999999999987677999999999999998887776  2234499999999988888899999997776


Q ss_pred             ccCCC---C-----HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHH
Q 018003          258 IHCWS---S-----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR  329 (362)
Q Consensus       258 l~h~~---d-----~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~  329 (362)
                      +..+.   |     +...+..+.++|+|||+|+|..                               .-||.+++.+.++
T Consensus       146 ~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItS-------------------------------CN~T~dELv~~f~  194 (227)
T KOG1271|consen  146 LDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITS-------------------------------CNFTKDELVEEFE  194 (227)
T ss_pred             eeeeecCCCCcccceeeehhhHhhccCCCcEEEEEe-------------------------------cCccHHHHHHHHh
Confidence            65441   1     2356888999999999999864                               2367888999999


Q ss_pred             HCCCEEEEEEEe
Q 018003          330 QFQLVVNLKLFY  341 (362)
Q Consensus       330 ~~Gf~~v~~~~~  341 (362)
                      ..||+....+..
T Consensus       195 ~~~f~~~~tvp~  206 (227)
T KOG1271|consen  195 NFNFEYLSTVPT  206 (227)
T ss_pred             cCCeEEEEeecc
Confidence            999977665443

>PRK14967 putative methyltransferase; Provisional

Probab=99.52  E-value=1.1e-12  Score=116.50  Aligned_cols=153  Identities=16%  Similarity=0.108  Sum_probs=101.6

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      ...++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...    ..++.++.+|+... +++++||+|+
T Consensus        33 ~~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~----~~~~~~~~~d~~~~-~~~~~fD~Vi  106 (223)
T PRK14967         33 GLGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA----GVDVDVRRGDWARA-VEFRPFDVVV  106 (223)
T ss_pred             ccCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh----CCeeEEEECchhhh-ccCCCeeEEE
Confidence            34567899999999999999988865 358999999999999999988765    34688889998653 4567899999


Q ss_pred             ecccccCCCC---------------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccc
Q 018003          254 AGAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIV  312 (362)
Q Consensus       254 ~~~vl~h~~d---------------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (362)
                      ++--...-..                     ...+++++.++|||||++++......   .....+..+..... .....
T Consensus       107 ~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---~~~~~~~~l~~~g~-~~~~~  182 (223)
T PRK14967        107 SNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS---GVERTLTRLSEAGL-DAEVV  182 (223)
T ss_pred             ECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc---CHHHHHHHHHHCCC-CeEEE
Confidence            9743221110                     24578899999999999998765442   11223333322111 11111


Q ss_pred             ccccccCCHHH--HHHHHHHCCCEEE
Q 018003          313 GFSIPVLGFDD--LKRIFRQFQLVVN  336 (362)
Q Consensus       313 ~~~~~~~s~~~--l~~ll~~~Gf~~v  336 (362)
                      ..+...+....  ...++++.||...
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (223)
T PRK14967        183 ASQWIPFGPVLRARAAWLERRGLLPP  208 (223)
T ss_pred             EeeccCccHHHHHHHHHHHHcCCCCC
Confidence            11222233322  3477899999744

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.52  E-value=7.3e-13  Score=119.78  Aligned_cols=140  Identities=19%  Similarity=0.172  Sum_probs=104.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +..+..+.+.+.. .+.+|||+|||+|.++..+++..+..+++|+|+++.+++.+++++...   ...++.++.+|+.. 
T Consensus        74 ~~l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~~~~~~d~~~-  148 (251)
T TIGR03534        74 EELVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL---GLDNVTFLQSDWFE-  148 (251)
T ss_pred             HHHHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---CCCeEEEEECchhc-
Confidence            3344555555543 356899999999999999999877779999999999999999988765   13469999999866 


Q ss_pred             CCCCCcceEEEeccccc------CCC------C--------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchh
Q 018003          243 PFASSSIDAVHAGAAIH------CWS------S--------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP  296 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~------h~~------d--------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~  296 (362)
                      ++++++||+|+++-...      ++.      +              ...+++++.++|+|||.+++...          
T Consensus       149 ~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------  218 (251)
T TIGR03534       149 PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------  218 (251)
T ss_pred             cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------
Confidence            45578899999853221      111      0              13578999999999999987531          


Q ss_pred             hhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEE
Q 018003          297 FSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~  338 (362)
                                           +...+.+.++++++||+.+..
T Consensus       219 ---------------------~~~~~~~~~~l~~~gf~~v~~  239 (251)
T TIGR03534       219 ---------------------YDQGEAVRALFEAAGFADVET  239 (251)
T ss_pred             ---------------------ccHHHHHHHHHHhCCCCceEE
Confidence                                 122457889999999977654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.51  E-value=4.3e-13  Score=118.51  Aligned_cols=112  Identities=17%  Similarity=0.173  Sum_probs=91.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ....+.+.+...++.+|||+|||+|.++..+++... ..+|+++|+++.+++.|+++++..   ...++.++.+|.....
T Consensus        65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~---g~~~v~~~~~d~~~~~  141 (215)
T TIGR00080        65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL---GLDNVIVIVGDGTQGW  141 (215)
T ss_pred             HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC---CCCCeEEEECCcccCC
Confidence            346677777778899999999999999999988743 457999999999999999998876   2467999999997654


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ...++||+|++.....++      .+.+.+.|||||++++..
T Consensus       142 ~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       142 EPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             cccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence            445689999998776655      356788999999999864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.50  E-value=3.5e-13  Score=118.22  Aligned_cols=101  Identities=21%  Similarity=0.241  Sum_probs=81.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CC
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA  245 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~  245 (362)
                      ..++.+|||+|||+|.++..+++.. +.+.|+|+|+++ |     .        ...++.++++|+...+        +.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~-----~--------~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M-----D--------PIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c-----c--------CCCCcEEEecCCCChHHHHHHHHHhC
Confidence            3558899999999999999988874 446999999988 1     1        1357899999998853        56


Q ss_pred             CCcceEEEecccccCCCCH-----------HHHHHHHHhhccCCcEEEEEEEccC
Q 018003          246 SSSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +++||+|++..+.++..++           ..+|+++.++|||||.|++.++..+
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~  169 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence            7899999998877665443           3589999999999999999876543

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.50  E-value=3e-13  Score=115.00  Aligned_cols=117  Identities=24%  Similarity=0.344  Sum_probs=92.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+.+.+...++.+|||+|||+|.++..+++.++..+++++|+++.+++.++++++.+   ...++.++..|..... +
T Consensus        20 t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n---~~~~v~~~~~d~~~~~-~   95 (170)
T PF05175_consen   20 TRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN---GLENVEVVQSDLFEAL-P   95 (170)
T ss_dssp             HHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT---TCTTEEEEESSTTTTC-C
T ss_pred             HHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc---Cccccccccccccccc-c
Confidence            34555555544678999999999999999999998778999999999999999999887   1233999999986533 3


Q ss_pred             CCcceEEEecccccCCCC-----HHHHHHHHHhhccCCcEEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d-----~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +++||+|+++--++.-.+     ...++++..+.|||||.+++...
T Consensus        96 ~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen   96 DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            689999999977655443     35789999999999999987654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=9.7e-13  Score=119.10  Aligned_cols=157  Identities=20%  Similarity=0.240  Sum_probs=117.2

Q ss_pred             ccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEE
Q 018003          155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL  234 (362)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  234 (362)
                      -.+.+++....++.+.+++.  ++.+|||+|||+|-++...++.|. ..++|+|+++.+++.|++++..+  .....+..
T Consensus       142 GTG~HpTT~lcL~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N--~v~~~~~~  216 (300)
T COG2264         142 GTGTHPTTSLCLEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN--GVELLVQA  216 (300)
T ss_pred             CCCCChhHHHHHHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc--CCchhhhc
Confidence            34556666677777877776  489999999999999999999986 57999999999999999999887  11111222


Q ss_pred             EEecCCCCCCCCCcceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccc
Q 018003          235 VRADISRLPFASSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVG  313 (362)
Q Consensus       235 ~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (362)
                      ...+....+ ..++||+|+++-.    .++ ..+...+.+.|||||+++++-...+                        
T Consensus       217 ~~~~~~~~~-~~~~~DvIVANIL----A~vl~~La~~~~~~lkpgg~lIlSGIl~~------------------------  267 (300)
T COG2264         217 KGFLLLEVP-ENGPFDVIVANIL----AEVLVELAPDIKRLLKPGGRLILSGILED------------------------  267 (300)
T ss_pred             ccccchhhc-ccCcccEEEehhh----HHHHHHHHHHHHHHcCCCceEEEEeehHh------------------------
Confidence            222332222 2368999999763    233 4788999999999999999864321                        


Q ss_pred             cccccCCHHHHHHHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003          314 FSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKI  351 (362)
Q Consensus       314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~k  351 (362)
                            ..+.+.+.+.+.||++++....+.+..+..+|
T Consensus       268 ------q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~kr  299 (300)
T COG2264         268 ------QAESVAEAYEQAGFEVVEVLEREEWVAIVGKR  299 (300)
T ss_pred             ------HHHHHHHHHHhCCCeEeEEEecCCEEEEEEEc
Confidence                  13468889999999999998887777766665

>TIGR03438 probable methyltransferase

Probab=99.50  E-value=8.3e-13  Score=122.48  Aligned_cols=107  Identities=19%  Similarity=0.293  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCCC----cce
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS----SID  250 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~~----~fD  250 (362)
                      ++.+|||+|||+|..+..+.+..+ ..+|+|+|+|++|++.+++++...  .+..++.++++|+.+ +++...    ...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--~p~~~v~~i~gD~~~~~~~~~~~~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD--YPQLEVHGICADFTQPLALPPEPAAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh--CCCceEEEEEEcccchhhhhcccccCCeE
Confidence            467999999999999999998854 358999999999999999987764  123457778999976 343332    233


Q ss_pred             EEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEE
Q 018003          251 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       251 ~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ++++..++++++.  ...+|++++++|+|||.+++..
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            5555567888753  3478999999999999999754

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.49  E-value=3.3e-14  Score=121.18  Aligned_cols=158  Identities=19%  Similarity=0.142  Sum_probs=115.2

Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003          156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  235 (362)
                      ..+|..|+...++|. .....+-.++||+|||||.....+...-.  +.+|+|+|++|++.|.++        ..--.+.
T Consensus       105 kL~Y~vP~~l~emI~-~~~~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eK--------g~YD~L~  173 (287)
T COG4976         105 KLGYSVPELLAEMIG-KADLGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEK--------GLYDTLY  173 (287)
T ss_pred             HhcCccHHHHHHHHH-hccCCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhc--------cchHHHH
Confidence            345555665544444 44444467999999999999999888765  899999999999999985        1112344


Q ss_pred             EecCCCC-C-CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccc
Q 018003          236 RADISRL-P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVG  313 (362)
Q Consensus       236 ~~d~~~~-p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (362)
                      ++|+..+ + ..+..||+|++..|+.++.+...++.-....|+|||.|.++.-.......   +            ...+
T Consensus       174 ~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f------------~l~p  238 (287)
T COG4976         174 VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---F------------VLGP  238 (287)
T ss_pred             HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---e------------ecch
Confidence            5554322 2 34678999999999999999999999999999999999998765543211   1            1111


Q ss_pred             ccccc-CCHHHHHHHHHHCCCEEEEEEE
Q 018003          314 FSIPV-LGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       314 ~~~~~-~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                       +.+| .++..++.+++..||+++....
T Consensus       239 -s~RyAH~~~YVr~~l~~~Gl~~i~~~~  265 (287)
T COG4976         239 -SQRYAHSESYVRALLAASGLEVIAIED  265 (287)
T ss_pred             -hhhhccchHHHHHHHHhcCceEEEeec
Confidence             2222 4667899999999999887654

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.49  E-value=8.7e-14  Score=119.84  Aligned_cols=153  Identities=14%  Similarity=0.129  Sum_probs=112.2

Q ss_pred             CeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CCCCCCcceEE
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAV  252 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p~~~~~fD~V  252 (362)
                      .+|||||||.|.....+.+..++  ..++++|.|+.+++..+++....    ..++...+.|+..    -|...+++|+|
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~----e~~~~afv~Dlt~~~~~~~~~~~svD~i  148 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD----ESRVEAFVWDLTSPSLKEPPEEGSVDII  148 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc----hhhhcccceeccchhccCCCCcCccceE
Confidence            38999999999999999887665  78999999999999998875544    4566666666643    34667899999


Q ss_pred             EecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcc--cccccccccCCHHHHHHHH
Q 018003          253 HAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL--KIVGFSIPVLGFDDLKRIF  328 (362)
Q Consensus       253 ~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~l~~ll  328 (362)
                      ++.++|--++  ....++.++.++|||||.+++.++.....   ...-.+-.+.+...+  +..|....+|+.+++..++
T Consensus       149 t~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl---aqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f  225 (264)
T KOG2361|consen  149 TLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL---AQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELF  225 (264)
T ss_pred             EEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH---HHHhccCCceeecceEEccCCceeeeccHHHHHHHH
Confidence            9999998774  23588999999999999999998876321   110000011111111  2234345889999999999


Q ss_pred             HHCCCEEEEE
Q 018003          329 RQFQLVVNLK  338 (362)
Q Consensus       329 ~~~Gf~~v~~  338 (362)
                      .++||..++.
T Consensus       226 ~~agf~~~~~  235 (264)
T KOG2361|consen  226 TKAGFEEVQL  235 (264)
T ss_pred             Hhcccchhcc
Confidence            9999976544

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.48  E-value=8.3e-12  Score=104.68  Aligned_cols=120  Identities=22%  Similarity=0.246  Sum_probs=101.5

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      +.++.....+..|.+.++.+++|||||+|..+..++..++.++++++|-++++++..+++.++.   ..+|+.++.+|+.
T Consensus        18 TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f---g~~n~~vv~g~Ap   94 (187)
T COG2242          18 TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF---GVDNLEVVEGDAP   94 (187)
T ss_pred             cHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh---CCCcEEEEeccch
Confidence            3445556677889999999999999999999999998899999999999999999999998887   3789999999986


Q ss_pred             CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +.--...+||.|+....    .+...+|+.+...|||||++++..-.
T Consensus        95 ~~L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          95 EALPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             HhhcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            53112227999999887    45678899999999999999986543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.48  E-value=7e-13  Score=124.46  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=93.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+++.+.....++|||+|||+|.++..+++.++..+++++|+|+.+++.++++++..    .....++.+|....  .
T Consensus       185 t~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----~l~~~~~~~D~~~~--~  258 (342)
T PRK09489        185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----GLEGEVFASNVFSD--I  258 (342)
T ss_pred             HHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCCCEEEEcccccc--c
Confidence            35566666655566899999999999999999888789999999999999999988876    23456777787542  2


Q ss_pred             CCcceEEEecccccCCC-----CHHHHHHHHHhhccCCcEEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~-----d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .++||+|+++..+|+..     ....+++++.+.|||||.+++...
T Consensus       259 ~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        259 KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            57899999998887642     346899999999999999998764

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.47  E-value=1.7e-12  Score=122.02  Aligned_cols=118  Identities=23%  Similarity=0.290  Sum_probs=93.2

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ....+.......++.+|||+|||+|.++..++..+.  .++|+|+++.|++.++++++..   +..++.+..+|+.++|+
T Consensus       170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~---g~~~i~~~~~D~~~l~~  244 (329)
T TIGR01177       170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHY---GIEDFFVKRGDATKLPL  244 (329)
T ss_pred             HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHh---CCCCCeEEecchhcCCc
Confidence            344555555666788999999999999888777654  9999999999999999988765   13347899999999998


Q ss_pred             CCCcceEEEecccc------c-C-C-CCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 ASSSIDAVHAGAAI------H-C-W-SSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 ~~~~fD~V~~~~vl------~-h-~-~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++++||+|+++.-.      . + . .-...+++++.++|||||++++..+.
T Consensus       245 ~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~  296 (329)
T TIGR01177       245 SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPT  296 (329)
T ss_pred             ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcC
Confidence            88899999996321      1 1 1 11368999999999999999988764

This family is found exclusively in the Archaea.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.46  E-value=3.4e-13  Score=107.17  Aligned_cols=107  Identities=22%  Similarity=0.332  Sum_probs=87.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEec
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~  255 (362)
                      |.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.+++++...  ....++.++++|+...+  +.+++||+|+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN--GLDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC--TTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc--cCCceEEEEECchhhchhhccCceeEEEEEC
Confidence            4689999999999999999998 569999999999999999998875  23467999999997765  678999999998


Q ss_pred             ccccCCC--------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          256 AAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       256 ~vl~h~~--------d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      --.....        .-..+++++.++|||||.+++.+++
T Consensus        78 pP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   78 PPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             -STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            6654321        1247899999999999999998763

...

>PTZ00146 fibrillarin; Provisional

Probab=99.46  E-value=3.5e-12  Score=115.46  Aligned_cols=141  Identities=13%  Similarity=0.138  Sum_probs=96.4

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CCCCCc
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSS  248 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~~~~~  248 (362)
                      +...++.+|||+|||+|.++..+++. ++...|+++|+++.+.+...+....     ..++.++.+|+...   ....++
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----r~NI~~I~~Da~~p~~y~~~~~~  202 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----RPNIVPIIEDARYPQKYRMLVPM  202 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCCEEEECCccChhhhhcccCC
Confidence            34567899999999999999999987 3456899999998765444443322     25888999998542   223457


Q ss_pred             ceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003          249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI  327 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l  327 (362)
                      ||+|++...  . +|. ..++.++.++|||||.|++........ .                .. + ....|+ +++ +.
T Consensus       203 vDvV~~Dva--~-pdq~~il~~na~r~LKpGG~~vI~ika~~id-~----------------g~-~-pe~~f~-~ev-~~  258 (293)
T PTZ00146        203 VDVIFADVA--Q-PDQARIVALNAQYFLKNGGHFIISIKANCID-S----------------TA-K-PEVVFA-SEV-QK  258 (293)
T ss_pred             CCEEEEeCC--C-cchHHHHHHHHHHhccCCCEEEEEEeccccc-c----------------CC-C-HHHHHH-HHH-HH
Confidence            999998764  2 343 456679999999999999953321100 0                00 0 112233 344 78


Q ss_pred             HHHCCCEEEEEEEec
Q 018003          328 FRQFQLVVNLKLFYG  342 (362)
Q Consensus       328 l~~~Gf~~v~~~~~g  342 (362)
                      |+++||+.++.....
T Consensus       259 L~~~GF~~~e~v~L~  273 (293)
T PTZ00146        259 LKKEGLKPKEQLTLE  273 (293)
T ss_pred             HHHcCCceEEEEecC
Confidence            899999988877654

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.46  E-value=1.6e-12  Score=122.96  Aligned_cols=119  Identities=16%  Similarity=0.138  Sum_probs=94.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+++.++...+++|||+|||+|.++..+++++|..+|+++|.|+.+++.|+++++.+......++.++..|.... +.
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~  295 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VE  295 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CC
Confidence            45677777766567999999999999999999988889999999999999999998765111123678888887542 23


Q ss_pred             CCcceEEEecccccCC---CC--HHHHHHHHHhhccCCcEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCW---SS--PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~---~d--~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .++||+|+++-.+|..   .+  ...+++++.++|+|||.+++..
T Consensus       296 ~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        296 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            4689999998666543   22  2478999999999999999985

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.46  E-value=2.4e-12  Score=112.11  Aligned_cols=117  Identities=15%  Similarity=0.120  Sum_probs=91.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~  242 (362)
                      +....+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++++..   ...++.++.+|+.. +
T Consensus        27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~---~~~~v~~~~~d~~~~~  103 (196)
T PRK07402         27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF---GVKNVEVIEGSAPECL  103 (196)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCCeEEEECchHHHH
Confidence            3334567777777889999999999999999887766679999999999999999988765   13578999998854 2


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +.....+|.++...    ..+...+++++.++|+|||.+++..+.
T Consensus       104 ~~~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        104 AQLAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             hhCCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            22223467766532    235678999999999999999998764

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.45  E-value=2.3e-12  Score=118.72  Aligned_cols=102  Identities=20%  Similarity=0.274  Sum_probs=80.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.|++++..+  ....++....++...  ...++||+|+++.
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~~~n--~~~~~~~~~~~~~~~--~~~~~fDlVvan~  233 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNAELN--QVSDRLQVKLIYLEQ--PIEGKADVIVANI  233 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc--CCCcceEEEeccccc--ccCCCceEEEEec
Confidence            478999999999999988887763 58999999999999999988765  223456666665332  3357899999986


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ..++   ...++.++.++|||||.++++..
T Consensus       234 ~~~~---l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       234 LAEV---IKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             CHHH---HHHHHHHHHHHcCCCcEEEEEeC
Confidence            5443   35789999999999999998764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PHA03411 putative methyltransferase; Provisional

Probab=99.45  E-value=3.7e-12  Score=114.04  Aligned_cols=144  Identities=14%  Similarity=0.133  Sum_probs=106.5

Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003          156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  235 (362)
                      ++.|++|...+..+.  +....+.+|||+|||+|.++..++.+.+..+++|+|+++.+++.++++        ..++.++
T Consensus        45 ~G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n--------~~~v~~v  114 (279)
T PHA03411         45 SGAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL--------LPEAEWI  114 (279)
T ss_pred             ceeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CcCCEEE
Confidence            356777777764443  233346799999999999988887765446999999999999999885        3478899


Q ss_pred             EecCCCCCCCCCcceEEEecccccCCCCH--------------------HHHHHHHHhhccCCcEEEEEEEccCCCCcch
Q 018003          236 RADISRLPFASSSIDAVHAGAAIHCWSSP--------------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLI  295 (362)
Q Consensus       236 ~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--------------------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~  295 (362)
                      ++|+..+. ..++||+|+++..+.|.+..                    ..+++....+|+|+|.+++.--..       
T Consensus       115 ~~D~~e~~-~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~-------  186 (279)
T PHA03411        115 TSDVFEFE-SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR-------  186 (279)
T ss_pred             ECchhhhc-ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc-------
Confidence            99998765 34689999999888775321                    345677788999999776652111       


Q ss_pred             hhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003          296 PFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV  334 (362)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~  334 (362)
                      ++                 -..-+++++.+++|+++||.
T Consensus       187 ~~-----------------y~~sl~~~~y~~~l~~~g~~  208 (279)
T PHA03411        187 PY-----------------YDGTMKSNKYLKWSKQTGLV  208 (279)
T ss_pred             cc-----------------ccccCCHHHHHHHHHhcCcE
Confidence            00                 12336788999999999994

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.45  E-value=1.5e-12  Score=119.00  Aligned_cols=150  Identities=22%  Similarity=0.304  Sum_probs=109.3

Q ss_pred             CCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      +++....++.+.++...  +.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++++.+  +...++.+.  .
T Consensus       145 H~TT~lcl~~l~~~~~~--g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N--~~~~~~~v~--~  217 (295)
T PF06325_consen  145 HPTTRLCLELLEKYVKP--GKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN--GVEDRIEVS--L  217 (295)
T ss_dssp             CHHHHHHHHHHHHHSST--TSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT--T-TTCEEES--C
T ss_pred             CHHHHHHHHHHHHhccC--CCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc--CCCeeEEEE--E
Confidence            34445556677777554  78999999999999999999885 58999999999999999998887  333355442  2


Q ss_pred             CCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccccc
Q 018003          239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPV  318 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (362)
                      ....  ..+.||+|+++-..+-   ...++..+.++|+|||+++++-...                              
T Consensus       218 ~~~~--~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~------------------------------  262 (295)
T PF06325_consen  218 SEDL--VEGKFDLVVANILADV---LLELAPDIASLLKPGGYLILSGILE------------------------------  262 (295)
T ss_dssp             TSCT--CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEG------------------------------
T ss_pred             eccc--ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEEEEccccH------------------------------
Confidence            2222  3488999999765332   2467888999999999999986532                              


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003          319 LGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKI  351 (362)
Q Consensus       319 ~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~k  351 (362)
                      -..+.+.+.+++ ||+.++....+.+..+..+|
T Consensus       263 ~~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~K  294 (295)
T PF06325_consen  263 EQEDEVIEAYKQ-GFELVEEREEGEWVALVFKK  294 (295)
T ss_dssp             GGHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHC-CCEEEEEEEECCEEEEEEEe
Confidence            123467788876 99999988888876666654

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.44  E-value=5.7e-12  Score=115.98  Aligned_cols=121  Identities=19%  Similarity=0.171  Sum_probs=89.8

Q ss_pred             HHHHHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      +..++.+...+. ..+..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++..  ....++.++++|+..
T Consensus        99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~--~~~~~v~~~~~d~~~  176 (284)
T TIGR00536        99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN--QLEHRVEFIQSNLFE  176 (284)
T ss_pred             HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhc
Confidence            333444444332 22236899999999999999999887779999999999999999998765  112359999999865


Q ss_pred             CCCCCCcceEEEec-------------ccccCCC------------CHHHHHHHHHhhccCCcEEEEEEE
Q 018003          242 LPFASSSIDAVHAG-------------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       242 ~p~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                       +++..+||+|+++             .++.|-|            ....+++++.+.|+|||++++...
T Consensus       177 -~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g  245 (284)
T TIGR00536       177 -PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIG  245 (284)
T ss_pred             -cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence             3344589999996             2333332            234678899999999999987653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.44  E-value=3.4e-12  Score=112.49  Aligned_cols=112  Identities=17%  Similarity=0.124  Sum_probs=90.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+...+...++.+|||+|||+|.++..+++...  +++++|+++++++.++++++..   ...++.+..+|.....
T Consensus        65 ~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~  139 (212)
T PRK00312         65 YMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQL---GLHNVSVRHGDGWKGW  139 (212)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHC---CCCceEEEECCcccCC
Confidence            3346667777778889999999999999988887754  8999999999999999998775   2456999999985532


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ...++||+|++...++++      .+++.+.|+|||++++...
T Consensus       140 ~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 PAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             CcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence            234789999998877665      3567899999999998765

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.43  E-value=1e-11  Score=114.07  Aligned_cols=111  Identities=21%  Similarity=0.217  Sum_probs=85.0

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceE
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~  251 (362)
                      .+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++..  +...++.++++|+.. ++++++||+
T Consensus       116 ~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--~~~~~i~~~~~D~~~-~~~~~~fD~  192 (284)
T TIGR03533       116 WLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--GLEDRVTLIQSDLFA-ALPGRKYDL  192 (284)
T ss_pred             HhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhh-ccCCCCccE
Confidence            34333457999999999999999999877789999999999999999998775  123579999999854 234568999


Q ss_pred             EEecc------cccCC-----CCH--------------HHHHHHHHhhccCCcEEEEEE
Q 018003          252 VHAGA------AIHCW-----SSP--------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       252 V~~~~------vl~h~-----~d~--------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+++-      .+.++     .+|              ..+++++.+.|+|||++++..
T Consensus       193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~  251 (284)
T TIGR03533       193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV  251 (284)
T ss_pred             EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            99861      11111     112              356888999999999999764

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.43  E-value=7.4e-13  Score=112.41  Aligned_cols=110  Identities=28%  Similarity=0.367  Sum_probs=87.2

Q ss_pred             HHHHhhcCCC--CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCC
Q 018003          167 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP  243 (362)
Q Consensus       167 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p  243 (362)
                      ++.++.+...  .+.-|||||||+|.-+..+...|.  .++|+|+|+.|+++|.++  .      -.-.++.+|+ +.+|
T Consensus        38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~--e------~egdlil~DMG~Glp  107 (270)
T KOG1541|consen   38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVER--E------LEGDLILCDMGEGLP  107 (270)
T ss_pred             HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHh--h------hhcCeeeeecCCCCC
Confidence            4444444433  367899999999999999999886  899999999999999973  1      1234777887 6689


Q ss_pred             CCCCcceEEEecccccCCC-------CHH----HHHHHHHhhccCCcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWS-------SPS----TGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~-------d~~----~~l~~i~r~LkpgG~li~~~~  286 (362)
                      |+.++||.+++...++++-       +|.    .++..++.+|++|++.++..+
T Consensus       108 frpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  108 FRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             CCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence            9999999999988876652       333    578889999999999998755

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.43  E-value=9e-12  Score=118.02  Aligned_cols=153  Identities=14%  Similarity=0.044  Sum_probs=107.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ...+.+...+.  ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++++..    ..++.++++|+.+..
T Consensus       240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----g~rV~fi~gDl~e~~  313 (423)
T PRK14966        240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----GARVEFAHGSWFDTD  313 (423)
T ss_pred             HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----CCcEEEEEcchhccc
Confidence            33444444443  356999999999999999988777779999999999999999998876    347999999986543


Q ss_pred             C-CCCcceEEEeccccc-----CC----------------CC----HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhh
Q 018003          244 F-ASSSIDAVHAGAAIH-----CW----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF  297 (362)
Q Consensus       244 ~-~~~~fD~V~~~~vl~-----h~----------------~d----~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~  297 (362)
                      + ..++||+|+++--.-     +.                .|    ...+++++.+.|+|||.+++....          
T Consensus       314 l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~----------  383 (423)
T PRK14966        314 MPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF----------  383 (423)
T ss_pred             cccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc----------
Confidence            3 245799999964210     00                01    125566777899999998865421          


Q ss_pred             hHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE--EeceeEEEEeeCcc
Q 018003          298 SRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL--FYGHIQHYIVKIPS  353 (362)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~--~~g~~~~~~~~kp~  353 (362)
                                           -..+.+.+++++.||..++..  ..|......+++++
T Consensus       384 ---------------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~  420 (423)
T PRK14966        384 ---------------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK  420 (423)
T ss_pred             ---------------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence                                 234578899999999655433  34555555555443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.42  E-value=6.2e-12  Score=110.49  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=91.2

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc------C---CCCCCCEEEEEecCCCCC
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S---NFPKENFLLVRADISRLP  243 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~---~~~~~~~~~~~~d~~~~p  243 (362)
                      +...++.+||+.|||.|..+.+|+..|.  +|+|+|+|+.+++.+.+.....      .   -....++.++++|+.+++
T Consensus        39 l~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~  116 (226)
T PRK13256         39 LNINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP  116 (226)
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence            3444578999999999999999999998  8999999999999986632100      0   011357999999999986


Q ss_pred             CC---CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FA---SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~---~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ..   .+.||+|+-...+.+++..  .+..+.+.++|+|||.+++.+...
T Consensus       117 ~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~  166 (226)
T PRK13256        117 KIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH  166 (226)
T ss_pred             ccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence            32   2689999999999999643  478999999999999999887654

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.41  E-value=4.4e-12  Score=107.94  Aligned_cols=157  Identities=18%  Similarity=0.241  Sum_probs=99.5

Q ss_pred             hhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCC-CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q 018003          142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (362)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~  220 (362)
                      .-..|+.++++.......    .-++.+.+++...+ +..|.|+|||.+.++..+... .  .|...|+-.         
T Consensus        40 ~F~~YH~Gfr~Qv~~WP~----nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva---------  103 (219)
T PF05148_consen   40 LFDIYHEGFRQQVKKWPV----NPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVA---------  103 (219)
T ss_dssp             HHHHHHHHHHHHHCTSSS-----HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS----------
T ss_pred             HHHHHHHHHHHHHhcCCC----CcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccC---------
Confidence            334577788877643322    22345555554443 568999999999999765432 2  799999965         


Q ss_pred             HhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH
Q 018003          221 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL  300 (362)
Q Consensus       221 ~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~  300 (362)
                               .+-.+..+|+..+|++++++|++++.-+|.- .|...+++|..|+|||||.|.|.+..             
T Consensus       104 ---------~n~~Vtacdia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~-------------  160 (219)
T PF05148_consen  104 ---------PNPRVTACDIANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVK-------------  160 (219)
T ss_dssp             ---------SSTTEEES-TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEG-------------
T ss_pred             ---------CCCCEEEecCccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEec-------------
Confidence                     2334788999999999999999999988876 58899999999999999999998753             


Q ss_pred             HHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE-eceeEEEEeeCc
Q 018003          301 LRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF-YGHIQHYIVKIP  352 (362)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~~~kp  352 (362)
                                     .++-+.+.+.+.+++.||+...... ..++..+.-+|.
T Consensus       161 ---------------SRf~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~  198 (219)
T PF05148_consen  161 ---------------SRFENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI  198 (219)
T ss_dssp             ---------------GG-S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred             ---------------ccCcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence                           3444678899999999998876543 344555554444

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.41  E-value=1.6e-11  Score=112.67  Aligned_cols=141  Identities=16%  Similarity=0.095  Sum_probs=103.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +...+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++...   ...++.++.+|+...
T Consensus        94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~---~~~~i~~~~~d~~~~  170 (275)
T PRK09328         94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHG---LGARVEFLQGDWFEP  170 (275)
T ss_pred             HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhC---CCCcEEEEEccccCc
Confidence            33444555444555678999999999999999999887789999999999999999987721   246899999998543


Q ss_pred             CCCCCcceEEEecccc------c--------CC------------CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchh
Q 018003          243 PFASSSIDAVHAGAAI------H--------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP  296 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl------~--------h~------------~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~  296 (362)
                       +..++||+|+++.-.      +        |-            .....+++++.++|+|||.+++....         
T Consensus       171 -~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~---------  240 (275)
T PRK09328        171 -LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY---------  240 (275)
T ss_pred             -CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc---------
Confidence             335789999985221      1        11            11246788888999999999985310         


Q ss_pred             hhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEE
Q 018003          297 FSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~  338 (362)
                                            ...+.+.+++++.||..+..
T Consensus       241 ----------------------~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        241 ----------------------DQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             ----------------------hHHHHHHHHHHhCCCceeEE
Confidence                                  11345888999999976554

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.40  E-value=1.4e-11  Score=108.42  Aligned_cols=155  Identities=17%  Similarity=0.207  Sum_probs=107.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC---------CCCCCCEEE
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKENFLL  234 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---------~~~~~~~~~  234 (362)
                      ..+....+.+...++.+||..|||.|..+..|+++|.  +|+|+|+|+.+++.+.+......         .....++.+
T Consensus        24 p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   24 PALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             HHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             HHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            3334444445566778999999999999999999987  99999999999999854322100         012346899


Q ss_pred             EEecCCCCCCCC-CcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccc
Q 018003          235 VRADISRLPFAS-SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKI  311 (362)
Q Consensus       235 ~~~d~~~~p~~~-~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (362)
                      +++|+..++... ++||+|+-...+.-++  ...+..+.+.++|+|||.+++.+...+..                  ..
T Consensus       102 ~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~------------------~~  163 (218)
T PF05724_consen  102 YCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQG------------------EM  163 (218)
T ss_dssp             EES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CS------------------CS
T ss_pred             EEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCc------------------CC
Confidence            999999876433 5799999998888775  33588999999999999966665543211                  00


Q ss_pred             cccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003          312 VGFSIPVLGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       312 ~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      .+ .....+.+++++++. .+|++.....
T Consensus       164 ~G-PPf~v~~~ev~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  164 EG-PPFSVTEEEVRELFG-PGFEIEELEE  190 (218)
T ss_dssp             SS-SS----HHHHHHHHT-TTEEEEEEEE
T ss_pred             CC-cCCCCCHHHHHHHhc-CCcEEEEEec
Confidence            11 233468889999998 8887765544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.37  E-value=3.6e-11  Score=111.49  Aligned_cols=105  Identities=19%  Similarity=0.137  Sum_probs=82.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc-
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA-  256 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~-  256 (362)
                      ..+|||+|||+|.++..++...+..+++++|+|+.+++.|+++++..  +...++.++++|+... ++.++||+|+++- 
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~--~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPP  210 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH--GLEDRVTLIESDLFAA-LPGRRYDLIVSNPP  210 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--CCCCcEEEEECchhhh-CCCCCccEEEECCC
Confidence            36899999999999999999877789999999999999999998875  1234699999998542 2356899999872 


Q ss_pred             -----c-------ccCCCC------------HHHHHHHHHhhccCCcEEEEEE
Q 018003          257 -----A-------IHCWSS------------PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       257 -----v-------l~h~~d------------~~~~l~~i~r~LkpgG~li~~~  285 (362)
                           .       ++|.+.            ...+++++.+.|+|||.+++..
T Consensus       211 yi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~  263 (307)
T PRK11805        211 YVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV  263 (307)
T ss_pred             CCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence                 1       112221            1367899999999999999754

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.37  E-value=1.2e-11  Score=111.14  Aligned_cols=145  Identities=15%  Similarity=0.197  Sum_probs=105.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+.......+..+|+|||+|.|.++..++++.|+.+++..|+ |..++.+++         ..++.++.+|+. -+++. 
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~---------~~rv~~~~gd~f-~~~P~-  158 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE---------ADRVEFVPGDFF-DPLPV-  158 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH---------TTTEEEEES-TT-TCCSS-
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc---------ccccccccccHH-hhhcc-
Confidence            444555555667999999999999999999999999999999 888888887         369999999997 55555 


Q ss_pred             cceEEEecccccCCCCHH--HHHHHHHhhccCC--cEEEEEEEccCCCCcchhhh--HHHHHhhhhcccccccccccCCH
Q 018003          248 SIDAVHAGAAIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS--RLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~--~~l~~i~r~Lkpg--G~li~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                       +|++++.++||+++|..  .+|+++++.|+||  |+|+|.++..+.........  ..+....+   -... ...-.|.
T Consensus       159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~m---l~~~-~G~~rt~  233 (241)
T PF00891_consen  159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNM---LVLT-GGKERTE  233 (241)
T ss_dssp             -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHH---HHHH-SSS-EEH
T ss_pred             -ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHH---HHhc-CCCCcCH
Confidence             99999999999998765  7899999999999  99999998865442222211  01222221   1111 2455788


Q ss_pred             HHHHHHHH
Q 018003          322 DDLKRIFR  329 (362)
Q Consensus       322 ~~l~~ll~  329 (362)
                      ++|+.+|.
T Consensus       234 ~e~~~ll~  241 (241)
T PF00891_consen  234 EEWEALLK  241 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhC
Confidence            88888874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.36  E-value=1.6e-11  Score=108.45  Aligned_cols=117  Identities=17%  Similarity=0.244  Sum_probs=94.9

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FA  245 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~  245 (362)
                      .|..+......++|||+|||+|..+..++++....+++|||+.+++.+.|++.++.+  ....++.++++|+..+.  ..
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln--~l~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN--PLEERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC--cchhceeEehhhHHHhhhccc
Confidence            555666666688999999999999999999966689999999999999999998874  45789999999998764  33


Q ss_pred             CCcceEEEecccccCC------------------CCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCW------------------SSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~------------------~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ..+||+|+|+--..-.                  .+.+..++...++|||||.+.+..+
T Consensus       113 ~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r  171 (248)
T COG4123         113 FASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR  171 (248)
T ss_pred             ccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence            4579999998432211                  1245779999999999999998754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.35  E-value=5.4e-12  Score=110.14  Aligned_cols=113  Identities=20%  Similarity=0.232  Sum_probs=87.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ....+.+.+..+++.+|||||||+|+++..++.. ++...|+++|.++..++.|+++++..   ...++.++++|...--
T Consensus        60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~---~~~nv~~~~gdg~~g~  136 (209)
T PF01135_consen   60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL---GIDNVEVVVGDGSEGW  136 (209)
T ss_dssp             HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH---TTHSEEEEES-GGGTT
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh---ccCceeEEEcchhhcc
Confidence            3567888888999999999999999999999887 55558999999999999999999876   2458999999985533


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      -..+.||.|++......+  |.    .+.+.||+||++++-.-
T Consensus       137 ~~~apfD~I~v~~a~~~i--p~----~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  137 PEEAPFDRIIVTAAVPEI--PE----ALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GGG-SEEEEEESSBBSS----H----HHHHTEEEEEEEEEEES
T ss_pred             ccCCCcCEEEEeeccchH--HH----HHHHhcCCCcEEEEEEc
Confidence            345689999999888754  33    36777999999997554

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.34  E-value=2.5e-11  Score=105.49  Aligned_cols=174  Identities=17%  Similarity=0.186  Sum_probs=120.4

Q ss_pred             CCcCCCCccchhcccCc-hhhHHHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCC
Q 018003          124 KDYGELMSPATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFS  202 (362)
Q Consensus       124 ~~Y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~  202 (362)
                      ..|......+..+|..+ ..-..|+.+++...........+..++.|...   .....|.|+|||.+.++.  ...   .
T Consensus       129 qLYt~~s~~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r---~~~~vIaD~GCGEakiA~--~~~---~  200 (325)
T KOG3045|consen  129 QLYTGTSSEAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRR---PKNIVIADFGCGEAKIAS--SER---H  200 (325)
T ss_pred             hhccCCcHHHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhC---cCceEEEecccchhhhhh--ccc---c
Confidence            34555444455555543 33446777888766433333333333444332   234688999999998775  122   2


Q ss_pred             EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       203 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      .|+.+|+-+                  .+-+++.+|+..+|+++++.|++++..+|.- .|...+++|+.|+|||||.++
T Consensus       201 kV~SfDL~a------------------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~  261 (325)
T KOG3045|consen  201 KVHSFDLVA------------------VNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLY  261 (325)
T ss_pred             ceeeeeeec------------------CCCceeeccccCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEE
Confidence            799999854                  4566889999999999999999998888765 588999999999999999999


Q ss_pred             EEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE-eceeEEEEeeCc
Q 018003          283 GTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF-YGHIQHYIVKIP  352 (362)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~~~kp  352 (362)
                      |.+.                            ..++-+...+.+.|...||....... ...+..+..+|+
T Consensus       262 IAEv----------------------------~SRf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~  304 (325)
T KOG3045|consen  262 IAEV----------------------------KSRFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT  304 (325)
T ss_pred             EEeh----------------------------hhhcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence            9864                            23556667799999999997654433 334455555544

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=2.2e-11  Score=104.45  Aligned_cols=111  Identities=21%  Similarity=0.178  Sum_probs=93.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ...++.+.+.+.++.+|||||||+|+.+..+++...  +|+.+|..++..+.|+++++..   +..|+.+.++|...---
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~l---g~~nV~v~~gDG~~G~~  134 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETL---GYENVTVRHGDGSKGWP  134 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHc---CCCceEEEECCcccCCC
Confidence            357788889999999999999999999999999865  9999999999999999999887   35679999999855322


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ..+.||.|+.......+|++      +.+.|||||++++-.-
T Consensus       135 ~~aPyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         135 EEAPYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CCCCcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence            45789999999988876543      5678999999998654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=4.8e-11  Score=116.02  Aligned_cols=118  Identities=22%  Similarity=0.276  Sum_probs=92.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--C
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~  244 (362)
                      ..+...+.+.++.+|||+|||+|..+..+++.++...|+++|+++.+++.++++++..    ..++.++++|+..++  +
T Consensus       234 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----g~~~~~~~~D~~~~~~~~  309 (427)
T PRK10901        234 QLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----GLKATVIVGDARDPAQWW  309 (427)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeEEEEcCcccchhhc
Confidence            3455567777899999999999999999998875579999999999999999998876    335789999998754  3


Q ss_pred             CCCcceEEEecc------cccCC------CCH----------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          245 ASSSIDAVHAGA------AIHCW------SSP----------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 ~~~~fD~V~~~~------vl~h~------~d~----------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ..++||.|++..      ++.+-      ..+          ..+|+++.++|||||++++++-..
T Consensus       310 ~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        310 DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            456899999532      22211      122          268999999999999999887543

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.32  E-value=2e-11  Score=93.55  Aligned_cols=101  Identities=27%  Similarity=0.406  Sum_probs=84.7

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-CCCcceEEEecccc
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAGAAI  258 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-~~~~fD~V~~~~vl  258 (362)
                      +|+|+|||.|.++..+.+ ....+++++|+++.+++.+++.....   ...++.++..|+.+... ..++||+|++..++
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~   76 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAAL---LADNVEVLKGDAEELPPEADESFDVIISDPPL   76 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcc---cccceEEEEcChhhhccccCCceEEEEEccce
Confidence            589999999999999888 34569999999999999988533222   25678999999987653 46789999999999


Q ss_pred             cC-CCCHHHHHHHHHhhccCCcEEEEE
Q 018003          259 HC-WSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       259 ~h-~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      ++ ..++..+++.+.+.|+|||.+++.
T Consensus        77 ~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          77 HHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98 778889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.32  E-value=7.3e-11  Score=101.08  Aligned_cols=172  Identities=16%  Similarity=0.167  Sum_probs=120.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCE-EEEEecCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF-LLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~d~~~~p~  244 (362)
                      ++.|.+++... +.+|||||||||..+.++++..|.....-.|+++..+...++.+....   ..|+ .-+..|+...+.
T Consensus        15 l~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~---~~Nv~~P~~lDv~~~~w   90 (204)
T PF06080_consen   15 LEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAG---LPNVRPPLALDVSAPPW   90 (204)
T ss_pred             HHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcC---CcccCCCeEeecCCCCC
Confidence            45666666552 226999999999999999999998889999999988766665554431   1222 233456554422


Q ss_pred             --------CCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccc
Q 018003          245 --------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGF  314 (362)
Q Consensus       245 --------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (362)
                              ..++||+|++.+++|-.+-.  ..+++.+.++|+|||.|++.-|...+.....+--..+...+.   ...+ 
T Consensus        91 ~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr---~rdp-  166 (204)
T PF06080_consen   91 PWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLR---SRDP-  166 (204)
T ss_pred             ccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHh---cCCC-
Confidence                    24589999999999987643  588999999999999999988765433222222223333322   2223 


Q ss_pred             ccccCCHHHHHHHHHHCCCEEEEEEEeceeE
Q 018003          315 SIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQ  345 (362)
Q Consensus       315 ~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~  345 (362)
                      ..-+.+.+++..+.+++||+..+.+.+..-+
T Consensus       167 ~~GiRD~e~v~~lA~~~GL~l~~~~~MPANN  197 (204)
T PF06080_consen  167 EWGIRDIEDVEALAAAHGLELEEDIDMPANN  197 (204)
T ss_pred             CcCccCHHHHHHHHHHCCCccCcccccCCCC
Confidence            5677889999999999999988777665543

The function of this family is unknown.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.32  E-value=2.7e-11  Score=112.48  Aligned_cols=111  Identities=16%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ...+.+.+...++.+|||+|||+|.++..+++... ...|+++|+++++++.|+++++..   +..++.++++|+...+.
T Consensus        69 ~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~---g~~nV~~i~gD~~~~~~  145 (322)
T PRK13943         69 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL---GIENVIFVCGDGYYGVP  145 (322)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCChhhccc
Confidence            35566666777789999999999999999988653 247999999999999999988765   24578999999876654


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..++||+|++...+++++      ..+.+.|+|||++++..
T Consensus       146 ~~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        146 EFAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             ccCCccEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence            556899999987766542      34678999999988753

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.31  E-value=1.2e-10  Score=103.84  Aligned_cols=119  Identities=20%  Similarity=0.329  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ...+..+...++..||.+|||.|.|+|.++..+++. ++.++|+..|+.++.++.|+++++..  +...++.+.+.|+..
T Consensus        26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--gl~~~v~~~~~Dv~~  103 (247)
T PF08704_consen   26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--GLDDNVTVHHRDVCE  103 (247)
T ss_dssp             HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--TCCTTEEEEES-GGC
T ss_pred             CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--CCCCCceeEecceec
Confidence            445678888999999999999999999999999975 77789999999999999999999987  446689999999965


Q ss_pred             CCCC---CCcceEEEecccccCCCCHHHHHHHHHhhc-cCCcEEEEEEEcc
Q 018003          242 LPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIV  288 (362)
Q Consensus       242 ~p~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpgG~li~~~~~~  288 (362)
                      -.|.   +..+|+|+.-     +++|..++..+.++| ||||++.+-.|+.
T Consensus       104 ~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i  149 (247)
T PF08704_consen  104 EGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCI  149 (247)
T ss_dssp             G--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH
T ss_pred             ccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCH
Confidence            4442   3579999853     589999999999999 9999999887763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.31  E-value=5.9e-11  Score=102.60  Aligned_cols=103  Identities=20%  Similarity=0.246  Sum_probs=77.2

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      .+....++.+|||+|||+|.++..+++.. ...+++++|+++.+     .         ..++.++++|+.+.+      
T Consensus        26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~---------~~~i~~~~~d~~~~~~~~~l~   91 (188)
T TIGR00438        26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P---------IENVDFIRGDFTDEEVLNKIR   91 (188)
T ss_pred             HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c---------CCCceEEEeeCCChhHHHHHH
Confidence            34445678999999999999999888774 44589999999854     1         246788999987643      


Q ss_pred             --CCCCcceEEEecccc--------cCCC---CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 --FASSSIDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl--------~h~~---d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                        ++.++||+|++....        +|..   +...+++++.++|+|||++++..+.
T Consensus        92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence              346689999986432        2211   1357899999999999999987644

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.31  E-value=2.8e-11  Score=117.91  Aligned_cols=120  Identities=23%  Similarity=0.236  Sum_probs=95.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-  243 (362)
                      ...+...+.+.++.+|||+|||+|..+..+++.. ..+.++++|+++.+++.+++++++.   +..++.++++|+..++ 
T Consensus       241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~---g~~~v~~~~~D~~~~~~  317 (434)
T PRK14901        241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL---GLKSIKILAADSRNLLE  317 (434)
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc---CCCeEEEEeCChhhccc
Confidence            3455566777889999999999999999888863 3468999999999999999998876   2357899999998765 


Q ss_pred             ---CCCCcceEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 ---FASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ---~~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                         ...++||.|++.      .++.+-++                ...+|.++.++|||||+++.+|-..
T Consensus       318 ~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        318 LKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             ccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence               445789999963      45555444                2477999999999999999887543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.30  E-value=3.2e-11  Score=117.28  Aligned_cols=122  Identities=22%  Similarity=0.215  Sum_probs=94.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ....+...+.+.++.+|||+|||+|..+..+++..+.++++++|+++.+++.+++++++. +. ...+.+..+|....+.
T Consensus       226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~-g~-~~~v~~~~~d~~~~~~  303 (426)
T TIGR00563       226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL-GL-TIKAETKDGDGRGPSQ  303 (426)
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc-CC-CeEEEEeccccccccc
Confidence            344566677888899999999999999999988754579999999999999999999876 11 1233446677665443


Q ss_pred             --CCCcceEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          245 --ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 --~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                        ..++||.|++.      +++.+.++                ...+|.++.++|||||.++.+|-..
T Consensus       304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence              46789999953      45666554                2478999999999999999998765

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.30  E-value=2.3e-11  Score=106.99  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=80.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ...++||||+|.|..+..++....  +|+++|.|+.|....+++          +..++..+  ++.-.+.+||+|.|.+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~k----------g~~vl~~~--~w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKK----------GFTVLDID--DWQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhC----------CCeEEehh--hhhccCCceEEEeehh
Confidence            456899999999999999988765  899999999998777763          44444333  3332356899999999


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +|..-.+|..+|++|++.|+|+|+++++...
T Consensus       160 vLDRc~~P~~LL~~i~~~l~p~G~lilAvVl  190 (265)
T PF05219_consen  160 VLDRCDRPLTLLRDIRRALKPNGRLILAVVL  190 (265)
T ss_pred             hhhccCCHHHHHHHHHHHhCCCCEEEEEEEe
Confidence            9999999999999999999999999987654

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.30  E-value=8.3e-11  Score=116.28  Aligned_cols=104  Identities=14%  Similarity=0.102  Sum_probs=80.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc-
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA-  256 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~-  256 (362)
                      +.+|||+|||+|.++..++...+..+++++|+|+.+++.|++++...  +...++.++.+|+.. +++.++||+|+++- 
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--~l~~~v~~~~~D~~~-~~~~~~fDlIvsNPP  215 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--EVTDRIQIIHSNWFE-NIEKQKFDFIVSNPP  215 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--CCccceeeeecchhh-hCcCCCccEEEECCC
Confidence            46899999999999999988777779999999999999999998765  223578999999754 23456899999852 


Q ss_pred             -------------cccCCCC------------HHHHHHHHHhhccCCcEEEEE
Q 018003          257 -------------AIHCWSS------------PSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       257 -------------vl~h~~d------------~~~~l~~i~r~LkpgG~li~~  284 (362)
                                   ++.|-+.            ...+++++.++|+|||.+++.
T Consensus       216 Yi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        216 YISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             CCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence                         2222211            124677888999999999875

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=7.5e-11  Score=103.31  Aligned_cols=116  Identities=22%  Similarity=0.274  Sum_probs=100.4

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ....+...++..+|.+|||.|.|+|.++.+|+.. ++.++|+.+|+.++.++.|++++...  +...++.+..+|+.+.-
T Consensus        82 D~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--~l~d~v~~~~~Dv~~~~  159 (256)
T COG2519          82 DAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--GLGDRVTLKLGDVREGI  159 (256)
T ss_pred             CHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--ccccceEEEeccccccc
Confidence            3567888889999999999999999999999974 67789999999999999999999886  23445899999998876


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +.+ .||+|+.-     +++|..+++.+.++|||||.+++..|+.
T Consensus       160 ~~~-~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         160 DEE-DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             ccc-ccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            555 89999853     5899999999999999999999988765

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.28  E-value=2.7e-11  Score=104.20  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=100.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ...+.||.|+|.|+.+..+.... ..+|..+|+.+..++.|++.+...   ...-..+++..++++....++||+|++.+
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~---~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKD---NPRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCG---GCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhccc---CCCcceEEecCHhhccCCCCcEeEEEehH
Confidence            35689999999999998775543 359999999999999999876552   12346677777777654567999999999


Q ss_pred             cccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003          257 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV  334 (362)
Q Consensus       257 vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~  334 (362)
                      ++.|+.|..  .+|+.+...|+|+|++++-+.........   +           .... ..-.-+.+.++++++++|++
T Consensus       131 ~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~---~-----------D~~D-sSvTRs~~~~~~lF~~AGl~  195 (218)
T PF05891_consen  131 CLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDE---F-----------DEED-SSVTRSDEHFRELFKQAGLR  195 (218)
T ss_dssp             -GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEE---E-----------ETTT-TEEEEEHHHHHHHHHHCT-E
T ss_pred             hhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcc---c-----------CCcc-CeeecCHHHHHHHHHHcCCE
Confidence            999998764  89999999999999999987765422100   0           1111 23345678999999999999


Q ss_pred             EEEEEEe
Q 018003          335 VNLKLFY  341 (362)
Q Consensus       335 ~v~~~~~  341 (362)
                      +++....
T Consensus       196 ~v~~~~Q  202 (218)
T PF05891_consen  196 LVKEEKQ  202 (218)
T ss_dssp             EEEEEE-
T ss_pred             EEEeccc
Confidence            9876554

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.26  E-value=5.9e-10  Score=99.38  Aligned_cols=168  Identities=11%  Similarity=0.069  Sum_probs=123.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CCCCCcce
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFASSSID  250 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~~~~~fD  250 (362)
                      ...-+||||.||.|..........+.  .++...|.|+..++..++.+++.  +...-++|.++|+.+.   .--+...+
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--gL~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--GLEDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--CCccceEEEecCCCCHhHhhccCCCCC
Confidence            34679999999999998888777654  68999999999999999998886  2334459999998653   21234579


Q ss_pred             EEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003          251 AVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI  327 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l  327 (362)
                      +++.+..+|.++|-.   ..|+.+.+++.|||.++.+..      ++.|-+..+-.....+....++.++.-|..++.++
T Consensus       212 l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~L  285 (311)
T PF12147_consen  212 LAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQL  285 (311)
T ss_pred             EEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CCCcchHHHHHHHhcccCCCceEEEecCHHHHHHH
Confidence            999999999999854   578999999999999997653      23333332222222111222346788899999999


Q ss_pred             HHHCCCEEE--EEEEeceeEEEEeeC
Q 018003          328 FRQFQLVVN--LKLFYGHIQHYIVKI  351 (362)
Q Consensus       328 l~~~Gf~~v--~~~~~g~~~~~~~~k  351 (362)
                      .+++||+.+  .+..+|.+++-+++|
T Consensus       286 v~~aGF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  286 VEAAGFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             HHHcCCchhhheeccCCceEEEeecC
Confidence            999999653  445677777666543

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.26  E-value=3.6e-10  Score=101.97  Aligned_cols=114  Identities=18%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             HHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C
Q 018003          166 FELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  243 (362)
Q Consensus       166 ~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p  243 (362)
                      ++.+...+... .+.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++++..      +..++++|+.+. +
T Consensus        74 v~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~~~~~~~D~~~~l~  147 (251)
T TIGR03704        74 VDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------GGTVHEGDLYDALP  147 (251)
T ss_pred             HHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCEEEEeechhhcc
Confidence            34444444322 245899999999999999988766669999999999999999998765      247889998653 2


Q ss_pred             C-CCCcceEEEecccc------c--------CCC--------C----HHHHHHHHHhhccCCcEEEEEE
Q 018003          244 F-ASSSIDAVHAGAAI------H--------CWS--------S----PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~-~~~~fD~V~~~~vl------~--------h~~--------d----~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      - ..++||+|+++--.      .        |-+        |    ...+++.+.++|||||++++..
T Consensus       148 ~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~  216 (251)
T TIGR03704       148 TALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET  216 (251)
T ss_pred             hhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            1 13579999987421      1        110        1    1366777889999999999775

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.5e-10  Score=104.35  Aligned_cols=119  Identities=20%  Similarity=0.322  Sum_probs=96.2

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +.--+.+++.+....+.+|||+|||.|.++..+++..|..+++.+|.+..+++.|++++..+   ...+..++..|...-
T Consensus       144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N---~~~~~~v~~s~~~~~  220 (300)
T COG2813         144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN---GVENTEVWASNLYEP  220 (300)
T ss_pred             ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc---CCCccEEEEeccccc
Confidence            33356788888887777999999999999999999999999999999999999999999876   123335666776443


Q ss_pred             CCCCCcceEEEecccccCCCCH-----HHHHHHHHhhccCCcEEEEEEE
Q 018003          243 PFASSSIDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~~  286 (362)
                       ..+ +||+|+++--+|-=.+-     .+++++..+.|++||.|.+...
T Consensus       221 -v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         221 -VEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             -ccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence             233 89999999887643322     3789999999999999998865

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.24  E-value=6.9e-11  Score=102.14  Aligned_cols=104  Identities=25%  Similarity=0.236  Sum_probs=75.9

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  258 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl  258 (362)
                      +.++|+|||+|..+..++....  +|+|+|+|+.|++.|++.....  .......+...+...+--.+++.|+|++..++
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~--y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~  110 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVT--YCHTPSTMSSDEMVDLLGGEESVDLITAAQAV  110 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcc--cccCCccccccccccccCCCcceeeehhhhhH
Confidence            3899999999988888887765  9999999999999998842211  00111122222333332337899999999999


Q ss_pred             cCCCCHHHHHHHHHhhccCCc-EEEEEEEc
Q 018003          259 HCWSSPSTGVAEISRVLRPGG-VFVGTTYI  287 (362)
Q Consensus       259 ~h~~d~~~~l~~i~r~LkpgG-~li~~~~~  287 (362)
                      |++ |...+.+++.|+||+.| .+.+-.++
T Consensus       111 HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~  139 (261)
T KOG3010|consen  111 HWF-DLERFYKEAYRVLRKDGGLIAVWNYN  139 (261)
T ss_pred             Hhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence            987 88889999999999877 66655554

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.23  E-value=1.2e-10  Score=105.95  Aligned_cols=115  Identities=19%  Similarity=0.131  Sum_probs=89.4

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f  249 (362)
                      ..+.+.++.+|||+|||+|..+..+++.. ..+.|+++|+++.+++.+++++++.   ...++.++.+|...++...+.|
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~~~~~f  141 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC---GVLNVAVTNFDGRVFGAAVPKF  141 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc---CCCcEEEecCCHHHhhhhccCC
Confidence            45567788999999999999999888763 2358999999999999999999886   2357899999987766555679


Q ss_pred             eEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          250 DAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       250 D~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      |+|++.      .++.+-++                ...+|+++.++|||||+++.+|-..
T Consensus       142 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       142 DAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             CEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            999963      22222111                1258999999999999999887544

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.23  E-value=1.2e-10  Score=113.08  Aligned_cols=120  Identities=15%  Similarity=0.195  Sum_probs=92.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-C
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-F  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~  244 (362)
                      ..+...+.+.++.+|||+|||+|..+..++... ..++|+++|+++.+++.+++++++.   +..++.+.++|...++ +
T Consensus       227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~---g~~~v~~~~~Da~~l~~~  303 (431)
T PRK14903        227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL---KLSSIEIKIADAERLTEY  303 (431)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCeEEEEECchhhhhhh
Confidence            344456677789999999999999998888763 3469999999999999999998876   2346889999998765 4


Q ss_pred             CCCcceEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          245 ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       245 ~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ..++||.|++.      +++.+-++                ..++|.++.+.|||||.++.+|-...
T Consensus       304 ~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        304 VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            46789999963      22322221                13669999999999999999886643

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.23  E-value=9.8e-11  Score=101.43  Aligned_cols=100  Identities=22%  Similarity=0.359  Sum_probs=82.4

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C--CCCCcceEEEecc
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVHAGA  256 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p--~~~~~fD~V~~~~  256 (362)
                      .+||||||.|.++..++...|+..++|+|+....+..+.+++...   ...|+.++++|+..+ +  ++++++|.|..++
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~---~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F   96 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR---GLKNVRFLRGDARELLRRLFPPGSVDRIYINF   96 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH---TTSSEEEEES-CTTHHHHHSTTTSEEEEEEES
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh---cccceEEEEccHHHHHhhcccCCchheEEEeC
Confidence            899999999999999999999999999999999999999888776   378999999999873 2  4568999999765


Q ss_pred             cccCCCCH-------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          257 AIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       257 vl~h~~d~-------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                           |||             ..++..+.++|+|||.+.+.|-.
T Consensus        97 -----PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~  135 (195)
T PF02390_consen   97 -----PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV  135 (195)
T ss_dssp             ----------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred             -----CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence                 565             27899999999999999998743

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.22  E-value=3.3e-11  Score=102.98  Aligned_cols=151  Identities=18%  Similarity=0.233  Sum_probs=113.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      ...++|||||.|.....+...+ ..+++-+|.|-.|++.++..-     .+.-.+....+|-+.++|.++++|+|+++..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-----dp~i~~~~~v~DEE~Ldf~ens~DLiisSls  146 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-----DPSIETSYFVGDEEFLDFKENSVDLIISSLS  146 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-----CCceEEEEEecchhcccccccchhhhhhhhh
Confidence            4589999999999999999887 468999999999999998731     1234567788999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVN  336 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v  336 (362)
                      +|+..|...-+.++...|||+|.|+.+....+......--++...  ....-...++...+....++..+|.++||.-.
T Consensus       147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAe--lER~GGiSphiSPf~qvrDiG~LL~rAGF~m~  223 (325)
T KOG2940|consen  147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAE--LEREGGISPHISPFTQVRDIGNLLTRAGFSML  223 (325)
T ss_pred             hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHH--HHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence            999999999999999999999999988776653221111111110  00000233312344456789999999999543

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=99.22  E-value=2.6e-10  Score=97.88  Aligned_cols=147  Identities=12%  Similarity=0.108  Sum_probs=112.6

Q ss_pred             HHHHHHHHhhcCCCC----CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          163 EKEFELMKGYLKPVL----GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~----~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      ...++++........    ..++|||||=+..+...  ..+. -.|+.||+++.                  .-.+.+.|
T Consensus        33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~-fdvt~IDLns~------------------~~~I~qqD   91 (219)
T PF11968_consen   33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGW-FDVTRIDLNSQ------------------HPGILQQD   91 (219)
T ss_pred             HHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCc-eeeEEeecCCC------------------CCCceeec
Confidence            344455555443322    35999999986554432  2232 36999999762                  34468899


Q ss_pred             CCCCCCC---CCcceEEEecccccCCCCHH---HHHHHHHhhccCCcE-----EEEEEEccCCCCcchhhhHHHHHhhhh
Q 018003          239 ISRLPFA---SSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQVCFL  307 (362)
Q Consensus       239 ~~~~p~~---~~~fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~-----li~~~~~~~~~~~~~~~~~~~~~~~~~  307 (362)
                      +.+.|.+   ++.||+|.++-||.++|+|.   .+++.+.+.|+|+|.     |+++.|..-                  
T Consensus        92 Fm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~C------------------  153 (219)
T PF11968_consen   92 FMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPC------------------  153 (219)
T ss_pred             cccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchH------------------
Confidence            9888764   67899999999999999996   799999999999999     999887531                  


Q ss_pred             cccccccccccCCHHHHHHHHHHCCCEEEEEEEeceeEEEEeeCcc
Q 018003          308 DLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPS  353 (362)
Q Consensus       308 ~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~kp~  353 (362)
                          .. +.+|++.+.|..+++..||..++.........++.++..
T Consensus       154 ----v~-NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l~r~~~  194 (219)
T PF11968_consen  154 ----VT-NSRYMTEERLREIMESLGFTRVKYKKSKKLAYWLFRKSG  194 (219)
T ss_pred             ----hh-cccccCHHHHHHHHHhCCcEEEEEEecCeEEEEEEeecC
Confidence                01 578999999999999999999999888888877777653

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.22  E-value=2.3e-10  Score=97.15  Aligned_cols=109  Identities=10%  Similarity=0.116  Sum_probs=83.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+.+.+...++.+|||+|||+|.++..+++++  .+++++|+++.+++.+++++...     .++.++.+|+.++++++
T Consensus         3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~~-----~~v~ii~~D~~~~~~~~   75 (169)
T smart00650        3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAAA-----DNLTVIHGDALKFDLPK   75 (169)
T ss_pred             HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhccC-----CCEEEEECchhcCCccc
Confidence            456666776778899999999999999999885  49999999999999999887542     58999999999988777


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhh--ccCCcEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTT  285 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~--LkpgG~li~~~  285 (362)
                      ..||.|+++--. |+.  ...+..+.+.  +.++|.+++..
T Consensus        76 ~~~d~vi~n~Py-~~~--~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       76 LQPYKVVGNLPY-NIS--TPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             cCCCEEEECCCc-ccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence            779999987543 332  2334444432  34778777654

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=6.5e-10  Score=101.66  Aligned_cols=124  Identities=23%  Similarity=0.306  Sum_probs=93.5

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc--
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA--  257 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v--  257 (362)
                      +|||+|||+|..+..++...++.+|+|+|+|+.+++.|++++..+ +  ..++.++.+|...- . .++||+|+++--  
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~-~--l~~~~~~~~dlf~~-~-~~~fDlIVsNPPYi  187 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN-G--LVRVLVVQSDLFEP-L-RGKFDLIVSNPPYI  187 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc-C--CccEEEEeeecccc-c-CCceeEEEeCCCCC
Confidence            799999999999999999998889999999999999999999887 1  15667777775432 2 348999999821  


Q ss_pred             ---ccCC------CCH--------------HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccc
Q 018003          258 ---IHCW------SSP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGF  314 (362)
Q Consensus       258 ---l~h~------~d~--------------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (362)
                         ..+.      .+|              ..++.++.+.|+|||.+++..-                            
T Consensus       188 p~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g----------------------------  239 (280)
T COG2890         188 PAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG----------------------------  239 (280)
T ss_pred             CCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC----------------------------
Confidence               1111      122              2568888899999998887642                            


Q ss_pred             ccccCCHHHHHHHHHHCC-CEEEEEE
Q 018003          315 SIPVLGFDDLKRIFRQFQ-LVVNLKL  339 (362)
Q Consensus       315 ~~~~~s~~~l~~ll~~~G-f~~v~~~  339 (362)
                         +...+.+.+++.+.| |..+...
T Consensus       240 ---~~q~~~v~~~~~~~~~~~~v~~~  262 (280)
T COG2890         240 ---LTQGEAVKALFEDTGFFEIVETL  262 (280)
T ss_pred             ---CCcHHHHHHHHHhcCCceEEEEE
Confidence               223567899999999 6554443

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.21  E-value=8.2e-11  Score=109.70  Aligned_cols=167  Identities=20%  Similarity=0.186  Sum_probs=102.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC-------CCCCEEEEEecCCCCC----CC
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------PKENFLLVRADISRLP----FA  245 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~~d~~~~p----~~  245 (362)
                      ++.+|||+|||.|.-+.-+...+ ...++|+|++...++.|+++.......       ..-...++.+|.....    +.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            67899999999888776666654 359999999999999999998321100       0134567888875421    23


Q ss_pred             --CCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCC-------------cchhhhHH------
Q 018003          246 --SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPF-------------NLIPFSRL------  300 (362)
Q Consensus       246 --~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~-------------~~~~~~~~------  300 (362)
                        ...||+|.|.++||+.-..    ..+|+++...|+|||+|+.++|..+...             .+..-+..      
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~  220 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD  220 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc
Confidence              3599999999999998433    3689999999999999999999763110             00000000      


Q ss_pred             -HHHhhhhcc--c----ccccccccCCHHHHHHHHHHCCCEEEEEEEecee
Q 018003          301 -LRQVCFLDL--K----IVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHI  344 (362)
Q Consensus       301 -~~~~~~~~~--~----~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~  344 (362)
                       ....+...+  .    ...-.......+.+.+++++.||+.+....+..+
T Consensus       221 ~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef  271 (331)
T PF03291_consen  221 DFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEF  271 (331)
T ss_dssp             SS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHH
T ss_pred             CCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHH
Confidence             000000000  0    0010224456889999999999999987665443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PRK04457 spermidine synthase; Provisional

Probab=99.21  E-value=1.3e-10  Score=105.45  Aligned_cols=109  Identities=13%  Similarity=0.126  Sum_probs=84.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~~  255 (362)
                      ++.+|||||||+|.++..+++..+..+++++|+++++++.|++.+...  ...+++.++.+|+.+. .-..++||+|++.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~--~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP--ENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC--CCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            467899999999999999998888889999999999999999987543  1246899999998543 2223679999975


Q ss_pred             ccc-cCCC---CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          256 AAI-HCWS---SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       256 ~vl-~h~~---d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ..- ...+   ....+++++.+.|+|||++++..+.
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            311 1111   1258999999999999999986544

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=2.3e-10  Score=111.94  Aligned_cols=117  Identities=25%  Similarity=0.237  Sum_probs=90.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      ..+...+...++.+|||+|||+|..+..+++.. +.+.++++|+++.+++.+++++++.   +..++.++++|+..++  
T Consensus       240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~---g~~~v~~~~~D~~~~~~~  316 (444)
T PRK14902        240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL---GLTNIETKALDARKVHEK  316 (444)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCCcccccch
Confidence            445556677778999999999999999988863 4569999999999999999998876   2346999999997753  


Q ss_pred             CCCCcceEEEecc------cccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 FASSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ~~~~~fD~V~~~~------vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++ ++||+|++..      ++.+-++.                ..+|+++.++|||||.++.++-.
T Consensus       317 ~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        317 FA-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             hc-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            33 6899999752      22221211                25799999999999999987644

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=3.4e-10  Score=110.72  Aligned_cols=118  Identities=18%  Similarity=0.203  Sum_probs=90.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      .....+...++.+|||+|||+|..+..+++.. ...+|+++|+++.+++.+++++++.   +..++.++++|+..++ ++
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~---g~~~v~~~~~Da~~~~-~~  316 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL---GITIIETIEGDARSFS-PE  316 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh---CCCeEEEEeCcccccc-cC
Confidence            34455666778999999999999988887653 2358999999999999999998876   2347899999998765 45


Q ss_pred             CcceEEEec------ccccCCC------C----------HHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          247 SSIDAVHAG------AAIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       247 ~~fD~V~~~------~vl~h~~------d----------~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ++||+|++.      .++..-+      +          ...+|.++.++|||||+++.+|-...
T Consensus       317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            689999962      1221111      1          13589999999999999999886553

>PRK00811 spermidine synthase; Provisional

Probab=99.16  E-value=2.7e-10  Score=104.60  Aligned_cols=109  Identities=15%  Similarity=0.178  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC--CCCCEEEEEecCCCC-CCCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--PKENFLLVRADISRL-PFASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~d~~~~-p~~~~~fD~V~  253 (362)
                      .+.+||+||||+|..+..+.+.....+|+++|+++.+++.|++.+......  ..+++.++.+|+... ....++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            467999999999999999887644568999999999999999987643111  257899999998653 33457899999


Q ss_pred             ecccccCCCC----HHHHHHHHHhhccCCcEEEEEE
Q 018003          254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       254 ~~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +...-.+.+.    ...+++.+.+.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            8643222221    1467899999999999998753

>PLN02672 methionine S-methyltransferase

Probab=99.14  E-value=1.2e-09  Score=114.84  Aligned_cols=135  Identities=15%  Similarity=0.098  Sum_probs=97.8

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC-------------CCCCCEEEEEecCCCCCC
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------FPKENFLLVRADISRLPF  244 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------------~~~~~~~~~~~d~~~~p~  244 (362)
                      +.+|||+|||+|..+..+++..+..+++|+|+|+.+++.|+++++.+.-             ....++.++++|+.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999999988777999999999999999999876410             112479999999866431


Q ss_pred             C-CCcceEEEeccc--------------ccCC--------------------CCH----HHHHHHHHhhccCCcEEEEEE
Q 018003          245 A-SSSIDAVHAGAA--------------IHCW--------------------SSP----STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~-~~~fD~V~~~~v--------------l~h~--------------------~d~----~~~l~~i~r~LkpgG~li~~~  285 (362)
                      . ...||+|+++--              .+|-                    .|-    ..++.+..++|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            1 236999998721              1111                    111    366788888999999988764


Q ss_pred             EccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH-HHHHHCCCEEEEEEEece
Q 018003          286 YIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK-RIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~-~ll~~~Gf~~v~~~~~g~  343 (362)
                      -.                               -..+.+. +++++.||..++.+....
T Consensus       279 G~-------------------------------~q~~~v~~~l~~~~gf~~~~~~~~~~  306 (1082)
T PLN02672        279 GG-------------------------------RPGQAVCERLFERRGFRITKLWQTKI  306 (1082)
T ss_pred             Cc-------------------------------cHHHHHHHHHHHHCCCCeeEEeeehh
Confidence            21                               1123566 588888888777766543

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.11  E-value=5e-10  Score=98.66  Aligned_cols=109  Identities=17%  Similarity=0.177  Sum_probs=90.5

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC-CEEEEEecCCCC---CCC
Q 018003          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRL---PFA  245 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~---p~~  245 (362)
                      ...++......+||||||.|.++..+++..|+..++|||+....+..|.+++.+.    .- |+.+++.|+..+   -++
T Consensus        41 ~~~f~~~~~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~----~l~Nlri~~~DA~~~l~~~~~  116 (227)
T COG0220          41 SALFGNNNAPIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKEL----GLKNLRLLCGDAVEVLDYLIP  116 (227)
T ss_pred             HHHhCCCCCcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHc----CCCcEEEEcCCHHHHHHhcCC
Confidence            3344443335899999999999999999999999999999999999999998887    34 999999998653   245


Q ss_pred             CCcceEEEecccccCCCCH-------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +++.|-|..++     |||             ..+++.+.++|||||.|.+.|-.
T Consensus       117 ~~sl~~I~i~F-----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         117 DGSLDKIYINF-----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             CCCeeEEEEEC-----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence            66999999766     555             27899999999999999998844

>PHA03412 putative methyltransferase; Provisional

Probab=99.11  E-value=9.4e-10  Score=96.48  Aligned_cols=115  Identities=16%  Similarity=0.128  Sum_probs=84.8

Q ss_pred             ccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCC
Q 018003          155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFPKEN  231 (362)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~  231 (362)
                      ..+.|++|......+...  ...+.+|||+|||+|.++..++++.   +..+++++|+++.+++.|+++        ..+
T Consensus        29 ~~GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n--------~~~   98 (241)
T PHA03412         29 ELGAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI--------VPE   98 (241)
T ss_pred             cCCccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh--------ccC
Confidence            346677887776665422  2236799999999999999888752   245899999999999999976        346


Q ss_pred             EEEEEecCCCCCCCCCcceEEEecccccCC--CC----------HHHHHHHHHhhccCCcE
Q 018003          232 FLLVRADISRLPFASSSIDAVHAGAAIHCW--SS----------PSTGVAEISRVLRPGGV  280 (362)
Q Consensus       232 ~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~--~d----------~~~~l~~i~r~LkpgG~  280 (362)
                      +.++.+|+...++ +++||+|+++--..-.  .+          ...+++.+.+++++|+.
T Consensus        99 ~~~~~~D~~~~~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412         99 ATWINADALTTEF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             CEEEEcchhcccc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            8899999987664 5689999998443211  11          34688888887777765

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=99.11  E-value=2.1e-10  Score=102.89  Aligned_cols=112  Identities=26%  Similarity=0.390  Sum_probs=88.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC---CCCEEEEEecCCC------CCCCCC
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISR------LPFASS  247 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~~~~~~~~~d~~~------~p~~~~  247 (362)
                      ++..++|+|||.|.-+.-+-+.+. ..++|+|+++..+++|+++.+...+..   .-.+.|+.+|-..      +++++.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            477899999999988877777764 589999999999999999887652110   1136788888643      455666


Q ss_pred             cceEEEecccccCCC----CHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          248 SIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +||+|-|.+++|+--    ....+|+++.+.|||||+++.+.|+.+
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence            799999999998753    234789999999999999999998763

>PRK01581 speE spermidine synthase; Validated

Probab=99.11  E-value=8.1e-10  Score=102.82  Aligned_cols=107  Identities=20%  Similarity=0.139  Sum_probs=79.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--Hhhc--CCCCCCCEEEEEecCCCC-CCCCCcceE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISRL-PFASSSIDA  251 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~--~~~~~~~~~~~~~d~~~~-p~~~~~fD~  251 (362)
                      ...+||++|||+|..+..+.+..+..+++++|+++++++.|++.  +...  .....++++++.+|+... +...+.||+
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV  229 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV  229 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence            35699999999999999888876557999999999999999962  1110  011257999999998763 334568999


Q ss_pred             EEecccccCCCC------HHHHHHHHHhhccCCcEEEEE
Q 018003          252 VHAGAAIHCWSS------PSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       252 V~~~~vl~h~~d------~~~~l~~i~r~LkpgG~li~~  284 (362)
                      |++... .....      -..+++.+++.|+|||++++.
T Consensus       230 IIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        230 IIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             EEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            998732 11100      136899999999999998876

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.08  E-value=1.3e-09  Score=112.20  Aligned_cols=107  Identities=18%  Similarity=0.197  Sum_probs=82.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~V~~~  255 (362)
                      ++.+|||+|||+|.++..++..|. .+|+++|+|+.+++.|+++++.+ +....++.++++|+.+.. -..++||+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~n-g~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALN-GLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHh-CCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            378999999999999999998763 47999999999999999999876 222247999999985531 114689999985


Q ss_pred             cc-----------ccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          256 AA-----------IHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       256 ~v-----------l~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      --           .....+...++..+.++|+|||.+++.+
T Consensus       616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~  656 (702)
T PRK11783        616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSN  656 (702)
T ss_pred             CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            21           1112234567888999999999998764

>PRK03612 spermidine synthase; Provisional

Probab=99.08  E-value=1e-09  Score=109.18  Aligned_cols=109  Identities=15%  Similarity=0.091  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--HhhcC--CCCCCCEEEEEecCCCC-CCCCCcceE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQES--NFPKENFLLVRADISRL-PFASSSIDA  251 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~~--~~~~~~~~~~~~d~~~~-p~~~~~fD~  251 (362)
                      ++++|||+|||+|..+..+.+.....+++++|+++++++.++++  +....  ....++++++.+|..+. ...+++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            46799999999999999988764336999999999999999983  32210  11246899999998663 223468999


Q ss_pred             EEecccccCCCCH-----HHHHHHHHhhccCCcEEEEEE
Q 018003          252 VHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       252 V~~~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |++...-...+.+     ..+++.+.+.|||||++++..
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            9997543322222     358899999999999998764

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.07  E-value=1.3e-09  Score=97.25  Aligned_cols=116  Identities=11%  Similarity=0.097  Sum_probs=87.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C--
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p--  243 (362)
                      .+.......++++|||+|||+|.-+..++.. ...++++++|+++++++.|+++++..  +...+++++.+|+.+. +  
T Consensus        59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--GVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEccHHHHHHHH
Confidence            3333344445779999999999988877765 34579999999999999999999886  2346899999998653 2  


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                         .+.++||+|+...-=   +.....+..+.++|+|||++++....+
T Consensus       137 ~~~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        137 LNNDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             HhCCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence               124689999875321   234578999999999999988765443

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.07  E-value=1.6e-09  Score=103.76  Aligned_cols=107  Identities=18%  Similarity=0.214  Sum_probs=78.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--C--CCCcceEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F--ASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~--~~~~fD~V  252 (362)
                      ++.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.|+++++.+ +....++.++++|+....  +  ..++||+|
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~N-gl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV  297 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN-KLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI  297 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc-CCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence            47899999999999987766544 358999999999999999999876 221247899999986641  1  24589999


Q ss_pred             EecccccCC---------CCHHHHHHHHHhhccCCcEEEEEE
Q 018003          253 HAGAAIHCW---------SSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       253 ~~~~vl~h~---------~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ++.----.-         .+...+++...++|+|||.++..+
T Consensus       298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            987331100         112345566789999999999764

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=99.05  E-value=2.4e-09  Score=96.17  Aligned_cols=158  Identities=16%  Similarity=0.187  Sum_probs=113.1

Q ss_pred             HHHHHhhcC----CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC----------------
Q 018003          166 FELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------  225 (362)
Q Consensus       166 ~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----------------  225 (362)
                      ++.|.+..+    .....+||--|||.|+++..++..|.  .+.|.|.|--|+-..+-.+....                
T Consensus        41 ~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn  118 (270)
T PF07942_consen   41 LDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSN  118 (270)
T ss_pred             HHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccC
Confidence            344454444    23457899999999999999999987  99999999998766554433200                


Q ss_pred             ---------------------CCCCCCEEEEEecCCCCCCCC---CcceEEEecccccCCCCHHHHHHHHHhhccCCcEE
Q 018003          226 ---------------------NFPKENFLLVRADISRLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF  281 (362)
Q Consensus       226 ---------------------~~~~~~~~~~~~d~~~~p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~l  281 (362)
                                           .....++....||+..+...+   ++||+|+..+-|.-.++....|+.|.++|||||++
T Consensus       119 ~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~W  198 (270)
T PF07942_consen  119 QKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYW  198 (270)
T ss_pred             CCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEE
Confidence                                 012346788888887765444   79999999998888888999999999999999977


Q ss_pred             EEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003          282 VGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       282 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      +          ...|++.+....     .......--++.+++..+.++.||+.++...
T Consensus       199 I----------N~GPLlyh~~~~-----~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  199 I----------NFGPLLYHFEPM-----SIPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             E----------ecCCccccCCCC-----CCCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence            7          333333222111     0001022458899999999999998876544

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.02  E-value=5.7e-09  Score=102.10  Aligned_cols=114  Identities=20%  Similarity=0.329  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-  241 (362)
                      +...+.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++++..   ...++.++++|+.+ 
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~---~~~~v~~~~~d~~~~  357 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRN---GLDNVTFYHANLEED  357 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHc---CCCceEEEEeChHHh
Confidence            34456667777766788999999999999999998864  9999999999999999988765   13579999999864 


Q ss_pred             ---CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          242 ---LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       242 ---~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                         .++.+++||+|++.---.   .....++.+.+ ++|+++++++.
T Consensus       358 l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC  400 (443)
T PRK13168        358 FTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC  400 (443)
T ss_pred             hhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence               234456899999743211   12345655555 68999988875

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.01  E-value=7.6e-09  Score=89.73  Aligned_cols=121  Identities=11%  Similarity=0.113  Sum_probs=85.3

Q ss_pred             cHHHHHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          162 PEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       162 ~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      .+...+.+...+.. .++.+|||+|||+|.++..+..++. .+|+++|.++.+++.++++++.. +  ..++.++++|+.
T Consensus        37 ~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~-~--~~~v~~~~~D~~  112 (199)
T PRK10909         37 TDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATL-K--AGNARVVNTNAL  112 (199)
T ss_pred             CHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHh-C--CCcEEEEEchHH
Confidence            34444555555532 3577999999999999986555553 59999999999999999998876 1  347999999986


Q ss_pred             CC-CCCCCcceEEEecccccCCCCHHHHHHHHHh--hccCCcEEEEEEEc
Q 018003          241 RL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  287 (362)
Q Consensus       241 ~~-p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpgG~li~~~~~  287 (362)
                      .. +...++||+|++.--... .-...+++.+..  +|+|+|+++++...
T Consensus       113 ~~l~~~~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        113 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             HHHhhcCCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            52 222456999998765221 223345555554  47899988887643

>PLN02366 spermidine synthase

Probab=99.00  E-value=3.4e-09  Score=98.00  Aligned_cols=108  Identities=16%  Similarity=0.188  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-C-CCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-P-FASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p-~~~~~fD~V~  253 (362)
                      ++.+||+||||.|..+..+++.....+++.+|+++.+++.|++.+.... +...++++++.+|+... . .+.++||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            4679999999999999999887444689999999999999999876421 12357899999997442 1 2256899999


Q ss_pred             ecccccCCCC----HHHHHHHHHhhccCCcEEEEE
Q 018003          254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       254 ~~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~  284 (362)
                      +...-.+.+.    -..+++.+.+.|+|||+++..
T Consensus       171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            8543322221    136899999999999998764

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.00  E-value=9.6e-09  Score=96.00  Aligned_cols=113  Identities=12%  Similarity=0.156  Sum_probs=80.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      .++.+.+++...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++++..   ...+++++++|+..+..
T Consensus       161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~---~l~~v~~~~~D~~~~~~  235 (315)
T PRK03522        161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAEL---GLTNVQFQALDSTQFAT  235 (315)
T ss_pred             HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHc---CCCceEEEEcCHHHHHH
Confidence            344555565544568999999999999999998764  9999999999999999998776   13579999999976532


Q ss_pred             -CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       ..+.||+|++.---.  .-...++ ++...++|+++++++.
T Consensus       236 ~~~~~~D~Vv~dPPr~--G~~~~~~-~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        236 AQGEVPDLVLVNPPRR--GIGKELC-DYLSQMAPRFILYSSC  274 (315)
T ss_pred             hcCCCCeEEEECCCCC--CccHHHH-HHHHHcCCCeEEEEEC
Confidence             235799999763210  0012233 3334467888777664

>TIGR00417 speE spermidine synthase

Probab=99.00  E-value=5.1e-09  Score=95.68  Aligned_cols=108  Identities=13%  Similarity=0.148  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      .+.+||+||||+|.++..+.+.....+++++|+++++++.+++.+.... ....++++++.+|.... ....++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            3459999999999999988887655689999999999999999875431 11246788888887442 222468999998


Q ss_pred             cccccCCCC----HHHHHHHHHhhccCCcEEEEE
Q 018003          255 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       255 ~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~  284 (362)
                      ...-..-+.    ...+++.+.+.|+|||++++.
T Consensus       152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            654221111    247889999999999999976

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.00  E-value=2.7e-09  Score=92.21  Aligned_cols=150  Identities=17%  Similarity=0.190  Sum_probs=96.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC-----------------------------
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-----------------------------  227 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------------------------  227 (362)
                      .+..+|||||..|.++..+++......+.|+|+++..++.|++.++.....                             
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            367899999999999999999865568999999999999999976532100                             


Q ss_pred             ----------CCCCEEEEEecCCCCCCCCCcceEEEeccccc--CC--CC--HHHHHHHHHhhccCCcEEEEEEEccCCC
Q 018003          228 ----------PKENFLLVRADISRLPFASSSIDAVHAGAAIH--CW--SS--PSTGVAEISRVLRPGGVFVGTTYIVDGP  291 (362)
Q Consensus       228 ----------~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~--h~--~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~  291 (362)
                                ...|..+...|+.  .+....||+|+|.-+-.  |+  .|  ...+++.+.++|.|||+|++.-..++  
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWk--  213 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWK--  213 (288)
T ss_pred             cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchH--
Confidence                      0011112222222  23456799999875532  22  12  45899999999999999998644332  


Q ss_pred             CcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHC--CCEEEE
Q 018003          292 FNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQF--QLVVNL  337 (362)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~--Gf~~v~  337 (362)
                          .+....+..-.  ...+. ....+.++.+..++.+.  ||+.+.
T Consensus       214 ----sY~kaar~~e~--~~~ny-~~i~lkp~~f~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  214 ----SYKKAARRSEK--LAANY-FKIFLKPEDFEDWLNQIVVGLESVE  254 (288)
T ss_pred             ----HHHHHHHHHHH--hhcCc-cceecCHHHHHhhhhhhhhheeeec
Confidence                22222111100  01111 34557899999999887  665443

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.95  E-value=8.1e-09  Score=94.66  Aligned_cols=151  Identities=10%  Similarity=0.102  Sum_probs=108.7

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  258 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl  258 (362)
                      ...+|+|.|.|..+..+....+  ++-|++++...+..++..+.       +.+..+.+|..+- .|.  -|+|++.++|
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~-------~gV~~v~gdmfq~-~P~--~daI~mkWiL  246 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLA-------PGVEHVAGDMFQD-TPK--GDAIWMKWIL  246 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhc-------CCcceeccccccc-CCC--cCeEEEEeec
Confidence            6889999999999999999777  79999999888887777532       4588888888654 333  4699999999


Q ss_pred             cCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcch---hhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCC
Q 018003          259 HCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLI---PFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQL  333 (362)
Q Consensus       259 ~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf  333 (362)
                      |||.|-.  ++|+++...|+|||.+++.+...+......   .......+.++.. ...  ...-.+.++++.++.++||
T Consensus       247 hdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~--~Gkert~~e~q~l~~~~gF  323 (342)
T KOG3178|consen  247 HDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTS--GGKERTLKEFQALLPEEGF  323 (342)
T ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-Hhc--cceeccHHHHHhcchhhcC
Confidence            9998765  899999999999999999887544211111   1111111111100 011  2344688999999999999


Q ss_pred             EEEEEEEecee
Q 018003          334 VVNLKLFYGHI  344 (362)
Q Consensus       334 ~~v~~~~~g~~  344 (362)
                      .+......+..
T Consensus       324 ~~~~~~~~~~~  334 (342)
T KOG3178|consen  324 PVCMVALTAYS  334 (342)
T ss_pred             ceeEEEeccCc
Confidence            88776654443

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.95  E-value=1.3e-08  Score=99.31  Aligned_cols=113  Identities=17%  Similarity=0.210  Sum_probs=84.2

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  242 (362)
                      ...+.+.+.+...++.+|||+|||+|.++..+++...  +|+|+|+++.+++.|+++++..   ...++.++.+|+.+. 
T Consensus       279 ~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~---~~~nv~~~~~d~~~~l  353 (431)
T TIGR00479       279 KLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELN---GIANVEFLAGTLETVL  353 (431)
T ss_pred             HHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHh---CCCceEEEeCCHHHHH
Confidence            3455666666666678999999999999999998765  8999999999999999998765   246899999998652 


Q ss_pred             ---CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          243 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       243 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                         ++.+++||+|++.--=  ..-...+++.+.+ ++|++.++++
T Consensus       354 ~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvs  395 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVS  395 (431)
T ss_pred             HHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEc
Confidence               2335679999964321  1112455666554 8898877765

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.94  E-value=2.6e-08  Score=81.44  Aligned_cols=126  Identities=17%  Similarity=0.237  Sum_probs=106.1

Q ss_pred             ccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEE
Q 018003          155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFL  233 (362)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~  233 (362)
                      ..+-.+......+.+...+.+..|.-|||+|.|||-+++++..+| +...++.+|.|++......+.        .+.+.
T Consensus        26 VGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------~p~~~   97 (194)
T COG3963          26 VGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------YPGVN   97 (194)
T ss_pred             eeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------CCCcc
Confidence            445567778888999999999999999999999999999999986 456899999999999998886        56777


Q ss_pred             EEEecCCCCC-----CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          234 LVRADISRLP-----FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       234 ~~~~d~~~~p-----~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++.+|+..+.     +.+..||.|++.--+-.++--  .+.|+.+...|.+||.++..++..
T Consensus        98 ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp  159 (194)
T COG3963          98 IINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP  159 (194)
T ss_pred             ccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence            9999987764     556789999998777666543  478999999999999999888763

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.91  E-value=1.5e-08  Score=84.97  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      +.-.|.+|+|+|||||.++...+-.|+ ..|+|+|+++++++.++++..+.    ..++.++++|+.+..   +.+|.|+
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l----~g~v~f~~~dv~~~~---~~~dtvi  113 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEEL----LGDVEFVVADVSDFR---GKFDTVI  113 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhh----CCceEEEEcchhhcC---CccceEE
Confidence            444677899999999999999888885 58999999999999999998876    678999999998874   6689888


Q ss_pred             eccc
Q 018003          254 AGAA  257 (362)
Q Consensus       254 ~~~v  257 (362)
                      ++--
T Consensus       114 mNPP  117 (198)
T COG2263         114 MNPP  117 (198)
T ss_pred             ECCC
Confidence            8643

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.90  E-value=1.3e-08  Score=88.76  Aligned_cols=116  Identities=15%  Similarity=0.135  Sum_probs=89.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCC-C-
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRL-P-  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~-p-  243 (362)
                      .+.-.+....+++|||||.+.|.-+.+++..-+ +++++.+|.++++.+.|++++++.  +...++.++. +|..+. . 
T Consensus        50 ~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a--g~~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          50 LLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA--GVDDRIELLLGGDALDVLSR  127 (219)
T ss_pred             HHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc--CCcceEEEEecCcHHHHHHh
Confidence            333333444578999999999999999999876 789999999999999999999987  3345588888 466332 2 


Q ss_pred             CCCCcceEEEecccccCCC-CHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          244 FASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ...++||+|+.-    +-+ +-..++..+.++|+|||++++-.....
T Consensus       128 ~~~~~fDliFID----adK~~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         128 LLDGSFDLVFID----ADKADYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             ccCCCccEEEEe----CChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            346899999953    332 345889999999999999998655544

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.90  E-value=6.9e-09  Score=89.26  Aligned_cols=147  Identities=15%  Similarity=0.101  Sum_probs=102.7

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCC
Q 018003          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASS  247 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~  247 (362)
                      ....++..|.+|||...|-|+++....++|. ..|+-+|.+++.++.|.-+-=.. +....++.++.+|+.+.  .|.+.
T Consensus       127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr-~l~~~~i~iilGD~~e~V~~~~D~  204 (287)
T COG2521         127 VELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSR-ELFEIAIKIILGDAYEVVKDFDDE  204 (287)
T ss_pred             hheeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCc-cccccccEEecccHHHHHhcCCcc
Confidence            3445566799999999999999999999984 58999999999998886531000 11234689999998664  47899


Q ss_pred             cceEEEeccc-ccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          248 SIDAVHAGAA-IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       248 ~fD~V~~~~v-l~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      +||+|+..-- +.+-.  --..+.+|+.|+|||||.++-.+-++...                   +.    ..--+..+
T Consensus       205 sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r-------------------yr----G~d~~~gV  261 (287)
T COG2521         205 SFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR-------------------YR----GLDLPKGV  261 (287)
T ss_pred             ccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc-------------------cc----cCChhHHH
Confidence            9999984210 00000  11378999999999999999766543210                   00    11124578


Q ss_pred             HHHHHHCCCEEEEEEEe
Q 018003          325 KRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~  341 (362)
                      .+.|+++||++++....
T Consensus       262 a~RLr~vGF~~v~~~~~  278 (287)
T COG2521         262 AERLRRVGFEVVKKVRE  278 (287)
T ss_pred             HHHHHhcCceeeeeehh
Confidence            88999999998776544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.89  E-value=1.5e-08  Score=92.00  Aligned_cols=87  Identities=13%  Similarity=0.214  Sum_probs=72.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++...     .++.++++|+..+
T Consensus        15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~~-----~~v~ii~~D~~~~   87 (258)
T PRK14896         15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIAA-----GNVEIIEGDALKV   87 (258)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhccC-----CCEEEEEeccccC
Confidence            44456777777777789999999999999999999864  8999999999999999876542     5899999999988


Q ss_pred             CCCCCcceEEEecccc
Q 018003          243 PFASSSIDAVHAGAAI  258 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl  258 (362)
                      +++  .||.|+++--.
T Consensus        88 ~~~--~~d~Vv~NlPy  101 (258)
T PRK14896         88 DLP--EFNKVVSNLPY  101 (258)
T ss_pred             Cch--hceEEEEcCCc
Confidence            764  48999987553

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.89  E-value=1e-08  Score=93.82  Aligned_cols=87  Identities=15%  Similarity=0.221  Sum_probs=71.1

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .....+.+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.|++.+++++.      ..++.++++|+..
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~------~~~v~~i~~D~~~   98 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA------EDNLTIIEGDALK   98 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc------cCceEEEEChhhc
Confidence            345567777777777788999999999999999999976  99999999999999988653      2589999999998


Q ss_pred             CCCCCCcceEEEecc
Q 018003          242 LPFASSSIDAVHAGA  256 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~  256 (362)
                      +++++-.+|.|+++-
T Consensus        99 ~~~~~~~~~~vv~Nl  113 (272)
T PRK00274         99 VDLSELQPLKVVANL  113 (272)
T ss_pred             CCHHHcCcceEEEeC
Confidence            876542257887764

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.88  E-value=1.7e-09  Score=103.30  Aligned_cols=116  Identities=24%  Similarity=0.370  Sum_probs=83.1

Q ss_pred             CcHHHHHHHHhhcCC--C--CCCeEEEEcCccchHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHhhcCCCCCCCEE
Q 018003          161 GPEKEFELMKGYLKP--V--LGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFVQQESNFPKENFL  233 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~--~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~  233 (362)
                      +....++.|.+.+..  .  .-..+||+|||+|.|+.++.+++-  .+..+   |..+.+++.|.++          .+.
T Consensus        97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleR----------Gvp  164 (506)
T PF03141_consen   97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALER----------GVP  164 (506)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhc----------Ccc
Confidence            335566677777654  2  224689999999999999999863  33333   3444566666654          233


Q ss_pred             EEEec--CCCCCCCCCcceEEEecccccCCC-CHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          234 LVRAD--ISRLPFASSSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       234 ~~~~d--~~~~p~~~~~fD~V~~~~vl~h~~-d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ...+-  ..++||++++||+|.|..++-.+. +-..+|-++.|+|+|||+++++.|-.
T Consensus       165 a~~~~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  165 AMIGVLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hhhhhhccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            33333  468999999999999999986553 33568999999999999999987643

; GO: 0008168 methyltransferase activity

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.88  E-value=2.6e-08  Score=87.73  Aligned_cols=124  Identities=19%  Similarity=0.141  Sum_probs=89.0

Q ss_pred             HHHHHHHHhhcCCC---CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003          163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (362)
Q Consensus       163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  239 (362)
                      ++..+.+.+.+...   .+..|||+|||+|..+..+....+.+.++++|.|+.++..|.+++++.  ....++.++.-++
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~--~l~g~i~v~~~~m  208 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL--KLSGRIEVIHNIM  208 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH--hhcCceEEEeccc
Confidence            44455555555432   345799999999999999998888899999999999999999998876  3456677765444


Q ss_pred             CC-----CCCCCCcceEEEecccc-cC-------------------------CCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          240 SR-----LPFASSSIDAVHAGAAI-HC-------------------------WSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       240 ~~-----~p~~~~~fD~V~~~~vl-~h-------------------------~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +.     .+...+++|+++++--- -+                         ......++.-+.|+|+|||.+.+..-..
T Consensus       209 e~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  209 ESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             ccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence            22     34557899999998321 00                         0011244667789999999999987644

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.87  E-value=2.2e-08  Score=85.25  Aligned_cols=113  Identities=19%  Similarity=0.168  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C--C-CCCCcce
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L--P-FASSSID  250 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~--p-~~~~~fD  250 (362)
                      ..++.+|||+|||+|..+..++......+|+..|.++ .++..+.+++.+......++.+...|-.+ .  . ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            3457899999999999999998884446999999999 99999998887621124566666665433 1  1 2346899


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +|++..+++.-.....+++.+.++|+|+|.+++....+
T Consensus       122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            99999999987777899999999999999988777654

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02476 O-methyltransferase

Probab=98.86  E-value=3.2e-08  Score=89.72  Aligned_cols=115  Identities=16%  Similarity=0.068  Sum_probs=87.5

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC-C-
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP-F-  244 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p-~-  244 (362)
                      +...+...++++|||||+++|..+.+++... +++.++.+|.+++..+.|++.+++.  +...+++++.+|+.+ ++ + 
T Consensus       110 L~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--Gl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        110 LAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--GVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             HHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHH
Confidence            3333444457899999999999999998753 3568999999999999999999887  334689999999854 22 1 


Q ss_pred             ---CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          245 ---ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 ---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                         ..++||+|+.-.-   =.+....++.+.++|+|||++++-...+
T Consensus       188 ~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~  231 (278)
T PLN02476        188 QNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLW  231 (278)
T ss_pred             hcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCcc
Confidence               1368999996542   0234578899999999999988764443

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.85  E-value=1.7e-07  Score=80.13  Aligned_cols=112  Identities=20%  Similarity=0.227  Sum_probs=81.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCE---------EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEE
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQESNFPKENFLL  234 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  234 (362)
                      .....+.......++..+||--||+|.++...+..+.+..         ++|.|+++.+++.|++++...  +....+.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a--g~~~~i~~   92 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA--GVEDYIDF   92 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT--T-CGGEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc--ccCCceEE
Confidence            4445666666777788999999999999988877665545         899999999999999998876  23457899


Q ss_pred             EEecCCCCCCCCCcceEEEecccccC-CCCH-------HHHHHHHHhhccC
Q 018003          235 VRADISRLPFASSSIDAVHAGAAIHC-WSSP-------STGVAEISRVLRP  277 (362)
Q Consensus       235 ~~~d~~~~p~~~~~fD~V~~~~vl~h-~~d~-------~~~l~~i~r~Lkp  277 (362)
                      .+.|+..+++.++++|+|+++--... +.+.       ..+++++.++|++
T Consensus        93 ~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   93 IQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             EE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             EecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence            99999999988889999998744321 1111       2568889999999

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.84  E-value=2.9e-08  Score=94.85  Aligned_cols=112  Identities=12%  Similarity=0.142  Sum_probs=81.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-  244 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-  244 (362)
                      +..+.+++...++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|+++++..   ...++.++.+|+.+... 
T Consensus       222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~---~~~~~~~~~~d~~~~~~~  296 (374)
T TIGR02085       222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQML---GLDNLSFAALDSAKFATA  296 (374)
T ss_pred             HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHHHHHh
Confidence            34445555444567999999999999999987764  8999999999999999998776   13489999999865421 


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..++||+|++.---..  -...+++.+. .++|++.++++.
T Consensus       297 ~~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       297 QMSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             cCCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence            1246999987533111  1134555554 479999888875

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.82  E-value=2.9e-08  Score=90.62  Aligned_cols=107  Identities=12%  Similarity=0.129  Sum_probs=78.6

Q ss_pred             CCeEEEEcCccchHH----HHHHHhC----CCCEEEEEeCCHHHHHHHHHHH------hh------------cC------
Q 018003          178 GGNIIDASCGSGLFS----RIFAKSG----LFSLVVALDYSENMLKQCYEFV------QQ------------ES------  225 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~----~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~------~~------------~~------  225 (362)
                      .-+|+..||++|.=.    ..+.+..    ...+++|+|+|+.+++.|++-.      +.            ..      
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            369999999999632    2333321    1358999999999999998742      00            00      


Q ss_pred             ----CCCCCCEEEEEecCCCCCCC-CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEE
Q 018003          226 ----NFPKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       226 ----~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~  284 (362)
                          ......+.|.+.|+...+++ .+.||+|+|.+++.|+.+  ...+++.+.+.|+|||+|++-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                00124568888888775543 578999999999999965  458999999999999998864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.82  E-value=3.6e-07  Score=84.77  Aligned_cols=154  Identities=10%  Similarity=0.086  Sum_probs=93.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCC----CCCCcceE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP----FASSSIDA  251 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p----~~~~~fD~  251 (362)
                      .+.++||||||+|.....++.+.+..+++|+|+++.+++.|+++++.+. ....++.+.. .|...+.    .+.+.||+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np-~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANP-GLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcc-CCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            4679999999999888877777666799999999999999999988751 1234677754 3332221    23568999


Q ss_pred             EEecccccCCCCH-----HHHHHHH----------------HhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccc
Q 018003          252 VHAGAAIHCWSSP-----STGVAEI----------------SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLK  310 (362)
Q Consensus       252 V~~~~vl~h~~d~-----~~~l~~i----------------~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (362)
                      |+|+--++--.+-     ..-.+.+                .+++.+||.+-+..+....     . . .+.....   .
T Consensus       193 ivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~e-----S-~-~~~~~~g---w  262 (321)
T PRK11727        193 TLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEE-----S-K-AFAKQVL---W  262 (321)
T ss_pred             EEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHH-----H-H-HHHhhCc---E
Confidence            9999654422111     1112222                2445567776554433210     0 1 1111110   1


Q ss_pred             ccccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          311 IVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       311 ~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      +...-...-+.+.+.+.|++.|...++...+
T Consensus       263 ftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~  293 (321)
T PRK11727        263 FTSLVSKKENLPPLYRALKKVGAVEVKTIEM  293 (321)
T ss_pred             EEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence            1111223347889999999999966666554

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.81  E-value=1.8e-08  Score=99.73  Aligned_cols=107  Identities=14%  Similarity=0.128  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~  254 (362)
                      .+..+||||||.|.++..++...|+..++|+|++...+..+.++....   ...|+.++..|+..+  -++++++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~---~l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQ---NITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHc---CCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            456899999999999999999999999999999999988888876654   256888888887533  266888999997


Q ss_pred             cccccCCCCH--------HHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~d~--------~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ++-=-|....        ..+++.+.++|||||.+.+.|-
T Consensus       424 ~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD  463 (506)
T PRK01544        424 LFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASD  463 (506)
T ss_pred             ECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcC
Confidence            6632221111        2789999999999999998873

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.80  E-value=2.1e-08  Score=86.68  Aligned_cols=108  Identities=15%  Similarity=0.170  Sum_probs=69.1

Q ss_pred             CCCeEEEEcCccchH----HHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHH------hh------------cCCC--
Q 018003          177 LGGNIIDASCGSGLF----SRIFAKS-----GLFSLVVALDYSENMLKQCYEFV------QQ------------ESNF--  227 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~----~~~l~~~-----~~~~~v~gvD~s~~~~~~a~~~~------~~------------~~~~--  227 (362)
                      ..-+|+.+||++|.=    +..+.+.     +...+++|+|+|+.+++.|++-.      +.            ..+.  
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            456899999999963    2333331     22469999999999999998621      00            0000  


Q ss_pred             -----CCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEE
Q 018003          228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       228 -----~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~  284 (362)
                           ....+.|.+.|+.+.+...+.||+|+|.+||-++...  ..+++.+.+.|+|||.|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 1246889999998844456789999999999999655  48999999999999999975

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.80  E-value=1e-07  Score=86.38  Aligned_cols=86  Identities=12%  Similarity=0.184  Sum_probs=70.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||+|||+|.++..+++.++  .++++|+++.+++.+++++..     ..++.++.+|+..+
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~-----~~~v~v~~~D~~~~   87 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSL-----YERLEVIEGDALKV   87 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCc-----CCcEEEEECchhcC
Confidence            44456777777777788999999999999999999986  799999999999999987643     36899999999988


Q ss_pred             CCCCCcce---EEEeccc
Q 018003          243 PFASSSID---AVHAGAA  257 (362)
Q Consensus       243 p~~~~~fD---~V~~~~v  257 (362)
                      +++  .+|   +|+++-.
T Consensus        88 ~~~--~~d~~~~vvsNlP  103 (253)
T TIGR00755        88 DLP--DFPKQLKVVSNLP  103 (253)
T ss_pred             Chh--HcCCcceEEEcCC
Confidence            765  466   6665543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.80  E-value=1.2e-07  Score=92.11  Aligned_cols=113  Identities=15%  Similarity=0.219  Sum_probs=77.8

Q ss_pred             HHHHhhcCCC----CCCeEEEEcCccchHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          167 ELMKGYLKPV----LGGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       167 ~~l~~~l~~~----~~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      +.+.+.....    .+..|||||||+|.++...++.+    ...+|+++|-++.+....++++..+  +...+|+++.+|
T Consensus       172 ~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n--~w~~~V~vi~~d  249 (448)
T PF05185_consen  172 EALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN--GWGDKVTVIHGD  249 (448)
T ss_dssp             HHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT--TTTTTEEEEES-
T ss_pred             HHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc--CCCCeEEEEeCc
Confidence            3444444433    25689999999999987776654    2459999999998887777765544  345789999999


Q ss_pred             CCCCCCCCCcceEEEeccc--ccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          239 ISRLPFASSSIDAVHAGAA--IHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~v--l~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      ++++..+. ++|+|++-..  +-.-.--...|....|.|||||+++
T Consensus       250 ~r~v~lpe-kvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  250 MREVELPE-KVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             TTTSCHSS--EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ccCCCCCC-ceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence            99987654 8999997432  1111122356889999999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.78  E-value=2.9e-08  Score=86.49  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-----CCCCcc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASSSI  249 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-----~~~~~f  249 (362)
                      ..++|||||+++|.-+.++++..+ +++++.+|++++..+.|++.+++.  +...+++++.+|+.+. +     -..+.|
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--g~~~~I~~~~gda~~~l~~l~~~~~~~~f  122 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--GLDDRIEVIEGDALEVLPELANDGEEGQF  122 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--TGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--CCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence            356999999999999999998743 679999999999999999998876  2346899999998542 2     113579


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+|+.-..=   .+....+..+.++|+|||++++-.
T Consensus       123 D~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  123 DFVFIDADK---RNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             EEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             eEEEEcccc---cchhhHHHHHhhhccCCeEEEEcc
Confidence            999975531   234578889999999999998754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.78  E-value=1.6e-08  Score=95.11  Aligned_cols=110  Identities=27%  Similarity=0.378  Sum_probs=92.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++..++|+|||.|....++.... .+.++|+|.++..+..+.......  ....+-.++.+|+...|+++..||.+.+.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~--~l~~k~~~~~~~~~~~~fedn~fd~v~~l  185 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA--YLDNKCNFVVADFGKMPFEDNTFDGVRFL  185 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH--HhhhhcceehhhhhcCCCCccccCcEEEE
Confidence            456789999999999999888765 368999999998888777654433  11334445889999999999999999999


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .+..|.+++..+++|+.|++||||+++..++..
T Consensus       186 d~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  186 EVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             eecccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence            999999999999999999999999999877654

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.77  E-value=5.4e-08  Score=89.59  Aligned_cols=88  Identities=11%  Similarity=0.140  Sum_probs=72.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ...++.+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++.+++++...  ....+++++.+|+...
T Consensus        22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~--~~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNS--PLASKLEVIEGDALKT   97 (294)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhc--CCCCcEEEEECCHhhh
Confidence            44566777777777889999999999999999998865  8999999999999999988754  1146899999999876


Q ss_pred             CCCCCcceEEEecc
Q 018003          243 PFASSSIDAVHAGA  256 (362)
Q Consensus       243 p~~~~~fD~V~~~~  256 (362)
                      ++  ..||.|+++-
T Consensus        98 ~~--~~~d~VvaNl  109 (294)
T PTZ00338         98 EF--PYFDVCVANV  109 (294)
T ss_pred             cc--cccCEEEecC
Confidence            64  3689988763

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.77  E-value=9.6e-08  Score=91.11  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=80.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +.+|||++||+|.++..++.......|+++|+++.+++.++++++.+   ...++.+.++|+..+....+.||+|++.- 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N---~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN---GLENEKVFNKDANALLHEERKFDVVDIDP-  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCceEEEhhhHHHHHhhcCCCCEEEECC-
Confidence            46899999999999999987654458999999999999999998776   13456789999865421145799999753 


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                         ...+..++....+.+++||+++++
T Consensus       134 ---~Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        134 ---FGSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             ---CCCcHHHHHHHHHHhcCCCEEEEE
Confidence               145678888878889999999998

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.75  E-value=4.7e-08  Score=89.54  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      -.+++|||+|||+|.++...++.|. .+|+++|.|. +++.|++.+..+  +....++++.+.++++.+|.+++|+|++-
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~-ia~~a~~iv~~N--~~~~ii~vi~gkvEdi~LP~eKVDiIvSE  134 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASS-IADFARKIVKDN--GLEDVITVIKGKVEDIELPVEKVDIIVSE  134 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechH-HHHHHHHHHHhc--CccceEEEeecceEEEecCccceeEEeeh
Confidence            4578999999999999999999994 7999999977 558888887775  44566999999998877777899999987


Q ss_pred             ccccCC---CCHHHHHHHHHhhccCCcEEE
Q 018003          256 AAIHCW---SSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       256 ~vl~h~---~d~~~~l~~i~r~LkpgG~li  282 (362)
                      +.=+.+   .....+|-.=-+.|+|||.++
T Consensus       135 WMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  135 WMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            654333   123445555568999999886

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.72  E-value=9.5e-08  Score=88.02  Aligned_cols=119  Identities=21%  Similarity=0.280  Sum_probs=93.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~  241 (362)
                      -+..+.+.+.....+|..|||-=||||.++..+.-.|.  .++|.|++..|++-|+.+++..   ......+... |+..
T Consensus       183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y---~i~~~~~~~~~Da~~  257 (347)
T COG1041         183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYY---GIEDYPVLKVLDATN  257 (347)
T ss_pred             HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhh---CcCceeEEEeccccc
Confidence            34445566666677899999999999999998887776  9999999999999999998876   1345656666 9999


Q ss_pred             CCCCCCcceEEEecccccC-----CCC----HHHHHHHHHhhccCCcEEEEEEE
Q 018003          242 LPFASSSIDAVHAGAAIHC-----WSS----PSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h-----~~d----~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +|+++.++|.|++---.--     ...    ...+|+.+.++||+||++++..|
T Consensus       258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            9999889999997422100     011    24789999999999999998876

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.1e-07  Score=80.75  Aligned_cols=111  Identities=22%  Similarity=0.317  Sum_probs=84.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcC-------CCCCCCEEEEEe
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRA  237 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~  237 (362)
                      +.|...+  .||.++||+|.|+|+++..++..  .++..++|||.-++.++.+++++....       .....++.++.+
T Consensus        74 e~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   74 EYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            3444444  45999999999999999887743  233356999999999999999987652       123457889999


Q ss_pred             cCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       238 d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |....-.....||.|.+...      .....+++...|+|||.+++-.
T Consensus       152 Dgr~g~~e~a~YDaIhvGAa------a~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  152 DGRKGYAEQAPYDAIHVGAA------ASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             CccccCCccCCcceEEEccC------ccccHHHHHHhhccCCeEEEee
Confidence            99876656788999998754      2344677888999999998754

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.68  E-value=2.7e-08  Score=88.45  Aligned_cols=98  Identities=30%  Similarity=0.463  Sum_probs=83.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +..++|+|||.|..+..    .|.+.++|.|++...+..+++.         .......+|+..+|+.+.+||.+++..+
T Consensus        46 gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~---------~~~~~~~ad~l~~p~~~~s~d~~lsiav  112 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRS---------GGDNVCRADALKLPFREESFDAALSIAV  112 (293)
T ss_pred             cceeeecccCCcccCcC----CCcceeeecchhhhhccccccC---------CCceeehhhhhcCCCCCCccccchhhhh
Confidence            77899999999986643    3667899999999999888872         2226888999999999999999999999


Q ss_pred             ccCCCCH---HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          258 IHCWSSP---STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       258 l~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +||+...   ..+++++.|.|+|||...+..+..
T Consensus       113 ihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  113 IHHLSTRERRERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence            9999643   489999999999999988776654

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.67  E-value=1.5e-07  Score=84.31  Aligned_cols=115  Identities=11%  Similarity=0.062  Sum_probs=86.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-  243 (362)
                      ..+...+...+.++|||||+++|.-+.+++.. .++++++.+|.+++..+.|++.++..  +...+++++.+|+.+. + 
T Consensus        69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--g~~~~I~~~~G~a~e~L~~  146 (247)
T PLN02589         69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--GVAHKIDFREGPALPVLDQ  146 (247)
T ss_pred             HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEeccHHHHHHH
Confidence            33333334444679999999999999988876 34679999999999999999999886  3357999999998552 2 


Q ss_pred             C-----CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 F-----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ~-----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +     ..++||+|+.-.-=   ......++.+.++|+|||++++-..
T Consensus       147 l~~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNv  191 (247)
T PLN02589        147 MIEDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_pred             HHhccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCC
Confidence            1     13689999965430   1234678888999999999887543

>PRK04148 hypothetical protein; Provisional

Probab=98.66  E-value=3.5e-07  Score=73.43  Aligned_cols=106  Identities=10%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      .+.+.+.+...++.++||||||+|. ++..|.+.|.  +|+++|+++..++.+++.          .+.++.+|+....+
T Consensus         5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~----------~~~~v~dDlf~p~~   72 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKL----------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHh----------CCeEEECcCCCCCH
Confidence            3556666666667899999999996 8888888876  999999999999988774          56889999987653


Q ss_pred             C-CCcceEEEecccccCCCCHHHHHHHHHhhccC-CcEEEEEEEccC
Q 018003          245 A-SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD  289 (362)
Q Consensus       245 ~-~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp-gG~li~~~~~~~  289 (362)
                      . -+.+|+|.+..      -|..+..-+.++-+. |.-+++.....+
T Consensus        73 ~~y~~a~liysir------pp~el~~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         73 EIYKNAKLIYSIR------PPRDLQPFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             HHHhcCCEEEEeC------CCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence            3 35689998754      333334444443333 445666555443

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.63  E-value=3.9e-06  Score=69.83  Aligned_cols=128  Identities=20%  Similarity=0.243  Sum_probs=92.7

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceE
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~  251 (362)
                      +.......+||||||+|..+..+++. +++..+.++|+++.+++...+.++.+    ..++..+++|+..-- ..++.|+
T Consensus        39 L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n----~~~~~~V~tdl~~~l-~~~~VDv  113 (209)
T KOG3191|consen   39 LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN----RVHIDVVRTDLLSGL-RNESVDV  113 (209)
T ss_pred             HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc----CCccceeehhHHhhh-ccCCccE
Confidence            33333568999999999999888876 56778999999999999988888776    567889999986532 3488999


Q ss_pred             EEeccccc-----CC------------CC----HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccc
Q 018003          252 VHAGAAIH-----CW------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLK  310 (362)
Q Consensus       252 V~~~~vl~-----h~------------~d----~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (362)
                      ++.+--..     .+            .|    ...++..+-.+|.|.|++++.....                      
T Consensus       114 LvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~----------------------  171 (209)
T KOG3191|consen  114 LVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA----------------------  171 (209)
T ss_pred             EEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh----------------------
Confidence            99874321     11            01    1245666777888999999875432                      


Q ss_pred             ccccccccCCHHHHHHHHHHCCCEE
Q 018003          311 IVGFSIPVLGFDDLKRIFRQFQLVV  335 (362)
Q Consensus       311 ~~~~~~~~~s~~~l~~ll~~~Gf~~  335 (362)
                              -.++++-+.++..||..
T Consensus       172 --------N~p~ei~k~l~~~g~~~  188 (209)
T KOG3191|consen  172 --------NKPKEILKILEKKGYGV  188 (209)
T ss_pred             --------cCHHHHHHHHhhcccce
Confidence                    12456777888999854

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.61  E-value=7.3e-07  Score=76.94  Aligned_cols=107  Identities=13%  Similarity=0.072  Sum_probs=77.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-C-CCC-cceEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-ASS-SIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~-~~~-~fD~V  252 (362)
                      .+.++||++||+|.++..++.+|. ..|+++|.++.+++.++++++..  ....++.++.+|+... . + ... .||+|
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~--~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv  125 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL--KSGEQAEVVRNSALRALKFLAKKPTFDNVI  125 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh--CCcccEEEEehhHHHHHHHhhccCCCceEE
Confidence            478999999999999999999885 48999999999999999988776  1224688999998442 2 1 122 47888


Q ss_pred             EecccccCCCCHHHHHHHHH--hhccCCcEEEEEEEc
Q 018003          253 HAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI  287 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~--r~LkpgG~li~~~~~  287 (362)
                      +..--... .....++..+.  .+|+++|.+++....
T Consensus       126 ~~DPPy~~-~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       126 YLDPPFFN-GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             EECcCCCC-CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            86443321 22334455443  478999988877543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.60  E-value=2.4e-07  Score=82.88  Aligned_cols=148  Identities=16%  Similarity=0.251  Sum_probs=91.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC--------------CCCC-----------C
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPK-----------E  230 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------------~~~~-----------~  230 (362)
                      .+|.++||||||+-..-..-+ .-...+++..|.++..++..++-+++..              .+..           .
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa-~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSA-CEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTG-GGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhH-HHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            357799999999855432222 2223489999999988887666554431              0000           1


Q ss_pred             CE-EEEEecCCCCC-CCC-----CcceEEEecccccCCC-CHH---HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhH
Q 018003          231 NF-LLVRADISRLP-FAS-----SSIDAVHAGAAIHCWS-SPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR  299 (362)
Q Consensus       231 ~~-~~~~~d~~~~p-~~~-----~~fD~V~~~~vl~h~~-d~~---~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~  299 (362)
                      .+ .++.+|+.+.+ +..     +.||+|++..+|+... |+.   .+++++.++|||||.|++.............   
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~---  210 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG---  210 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT---
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC---
Confidence            12 36778887643 322     2599999999998874 553   7899999999999999998765432111100   


Q ss_pred             HHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003          300 LLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~  339 (362)
                                .  .++....+++.+++.|+++||.+.+..
T Consensus       211 ----------~--~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  211 ----------H--KFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             ----------E--EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             ----------E--ecccccCCHHHHHHHHHHcCCEEEecc
Confidence                      0  114556899999999999999887665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.60  E-value=6.3e-07  Score=76.63  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=80.7

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccccc
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH  259 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~  259 (362)
                      +++|||+|.|.-+..++-..|+.+++.+|....-+.+.+.-....   +..|+.++++.++. +....+||+|++..+  
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~-~~~~~~fd~v~aRAv--  124 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL---GLSNVEVINGRAEE-PEYRESFDVVTARAV--  124 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH---T-SSEEEEES-HHH-TTTTT-EEEEEEESS--
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh---CCCCEEEEEeeecc-cccCCCccEEEeehh--
Confidence            899999999999999888888889999999998888777766655   35689999999988 445688999999886  


Q ss_pred             CCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          260 CWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       260 h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                        .+...+++-+.+.|++||.+++.-
T Consensus       125 --~~l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  125 --APLDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             --SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             --cCHHHHHHHHHHhcCCCCEEEEEc
Confidence              567788999999999999998753

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=2.5e-06  Score=75.33  Aligned_cols=114  Identities=17%  Similarity=0.271  Sum_probs=95.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      +.++...|...||.+|+|-|.|+|.++.++++. +|.++++-.|+.+...+.|++.+++.  +...++.+.+-|+....|
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h--gi~~~vt~~hrDVc~~GF  171 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH--GIGDNVTVTHRDVCGSGF  171 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh--CCCcceEEEEeecccCCc
Confidence            578888899999999999999999999999987 67779999999999999999999987  467899999999976554


Q ss_pred             --CCCcceEEEecccccCCCCHHHHHHHHHhhccCCc-EEEEEEE
Q 018003          245 --ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTY  286 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG-~li~~~~  286 (362)
                        .+..+|+|+.     -++.|..++-.+.++||.+| ++....|
T Consensus       172 ~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSP  211 (314)
T KOG2915|consen  172 LIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSP  211 (314)
T ss_pred             cccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccH
Confidence              3567888875     35889999999999999887 4543333

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.60  E-value=1.1e-06  Score=77.68  Aligned_cols=144  Identities=14%  Similarity=0.090  Sum_probs=83.0

Q ss_pred             HHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEE-EEEecCCCCC--
Q 018003          168 LMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL-LVRADISRLP--  243 (362)
Q Consensus       168 ~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~d~~~~p--  243 (362)
                      .+...+.. .++.++||+|||+|.++..+++.|. .+|+|+|+++.|+....+.        ..++. +...|+..+.  
T Consensus        65 ~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~--------~~~v~~~~~~ni~~~~~~  135 (228)
T TIGR00478        65 EALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQ--------DERVKVLERTNIRYVTPA  135 (228)
T ss_pred             HHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhc--------CCCeeEeecCCcccCCHh
Confidence            34444433 4678999999999999999999863 5899999999888762221        23322 3333444322  


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEE-EEEccCCCCcchhhhHHHHHhhh-hccccccccccc
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG-TTYIVDGPFNLIPFSRLLRQVCF-LDLKIVGFSIPV  318 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  318 (362)
                         ..-..+|+++++..        ..+..+.++|+| |.+++ .-|.++..          ..... ... ......+.
T Consensus       136 ~~~~d~~~~DvsfiS~~--------~~l~~i~~~l~~-~~~~~L~KPqFE~~----------~~~~~~~gi-v~~~~~~~  195 (228)
T TIGR00478       136 DIFPDFATFDVSFISLI--------SILPELDLLLNP-NDLTLLFKPQFEAG----------REKKNKKGV-VRDKEAIA  195 (228)
T ss_pred             HcCCCceeeeEEEeehH--------hHHHHHHHHhCc-CeEEEEcChHhhhc----------HhhcCcCCe-ecCHHHHH
Confidence               12235776665544        248889999999 66554 33433211          00000 000 00001222


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEE
Q 018003          319 LGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       319 ~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      .-.+.+...+.+.||.+.....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~  217 (228)
T TIGR00478       196 LALHKVIDKGESPDFQEKKIIF  217 (228)
T ss_pred             HHHHHHHHHHHcCCCeEeeEEE
Confidence            3345667778888998765543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.60  E-value=2.7e-07  Score=79.85  Aligned_cols=106  Identities=20%  Similarity=0.240  Sum_probs=76.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      .++.+.+.  ++.+|+|+-||.|.|+..+++.+....|+++|++|.+++..++.++.+  ....++..+.+|...++. .
T Consensus        93 ~Ri~~~v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN--kv~~~i~~~~~D~~~~~~-~  167 (200)
T PF02475_consen   93 RRIANLVK--PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN--KVENRIEVINGDAREFLP-E  167 (200)
T ss_dssp             HHHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEES-GGG----T
T ss_pred             HHHHhcCC--cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc--CCCCeEEEEcCCHHHhcC-c
Confidence            34555544  488999999999999999998555569999999999999999998876  345678999999987764 7


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF  281 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~l  281 (362)
                      +.||.|++..-    ..-..+|..+.+++++||++
T Consensus       168 ~~~drvim~lp----~~~~~fl~~~~~~~~~~g~i  198 (200)
T PF02475_consen  168 GKFDRVIMNLP----ESSLEFLDAALSLLKEGGII  198 (200)
T ss_dssp             T-EEEEEE--T----SSGGGGHHHHHHHEEEEEEE
T ss_pred             cccCEEEECCh----HHHHHHHHHHHHHhcCCcEE
Confidence            88999998552    23346799999999999876

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.58  E-value=7.7e-07  Score=86.87  Aligned_cols=112  Identities=17%  Similarity=0.153  Sum_probs=85.9

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcceE
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDA  251 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~  251 (362)
                      .+.++.+|||+++|.|.-+..++... ..+.+++.|+++..++..++++++.   +..++.+...|...++ ...+.||.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~---G~~nv~v~~~D~~~~~~~~~~~fD~  186 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC---GVSNVALTHFDGRVFGAALPETFDA  186 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCchhhhhhhchhhcCe
Confidence            66789999999999999988888764 2358999999999999999999886   3467888888887653 22457999


Q ss_pred             EE----ec--ccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          252 VH----AG--AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       252 V~----~~--~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      |+    |+  +++..-++.                ..+|..+.++|||||+|+.+|=..
T Consensus       187 ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        187 ILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             EEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            99    33  223221111                367899999999999998877543

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.58  E-value=4.5e-07  Score=82.57  Aligned_cols=104  Identities=13%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC-CCCEEEEEecCCCCC-CCCCcceEEEecc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLP-FASSSIDAVHAGA  256 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~p-~~~~~fD~V~~~~  256 (362)
                      ++||-||-|.|..++.+.+.....+++.+|+++..++.|++.+....++. .+++.++..|..++- -...+||+|++.-
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            69999999999999999999877899999999999999999987663222 489999999986542 1233799999754


Q ss_pred             cccCCCCH------HHHHHHHHhhccCCcEEEEE
Q 018003          257 AIHCWSSP------STGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       257 vl~h~~d~------~~~l~~i~r~LkpgG~li~~  284 (362)
                      .=. . .|      ..+++.+++.|+++|+++..
T Consensus       158 tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         158 TDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            311 1 22      58999999999999999977

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.56  E-value=1.5e-06  Score=77.67  Aligned_cols=156  Identities=19%  Similarity=0.134  Sum_probs=91.4

Q ss_pred             HHHhhcCCC-CCCeEEEEcCcc--chHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCC--EEEEEecCCC
Q 018003          168 LMKGYLKPV-LGGNIIDASCGS--GLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADISR  241 (362)
Q Consensus       168 ~l~~~l~~~-~~~~vLDiGcG~--G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--~~~~~~d~~~  241 (362)
                      +..+++... .-...||||||-  -.+...+++ ..|+++|+.+|.++-.+..++..+...     ++  ..++++|+.+
T Consensus        58 RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~-----~~g~t~~v~aD~r~  132 (267)
T PF04672_consen   58 RAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN-----PRGRTAYVQADLRD  132 (267)
T ss_dssp             HHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT------TTSEEEEEE--TT-
T ss_pred             HHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC-----CCccEEEEeCCCCC
Confidence            333444333 235799999994  334555544 468889999999999999999988775     44  8999999976


Q ss_pred             CC------CCCCcce-----EEEecccccCCCC---HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh
Q 018003          242 LP------FASSSID-----AVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL  307 (362)
Q Consensus       242 ~p------~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~  307 (362)
                      ..      --.+-+|     .|++..+|||++|   |..+++.+...|.||..|+++....+...   .....+...+. 
T Consensus       133 p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p---~~~~~~~~~~~-  208 (267)
T PF04672_consen  133 PEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP---ERAEALEAVYA-  208 (267)
T ss_dssp             HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH---HHHHHHHHHHH-
T ss_pred             HHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH---HHHHHHHHHHH-
Confidence            42      0112233     7888999999964   78999999999999999999988765321   11122222221 


Q ss_pred             cccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          308 DLKIVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       308 ~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                         ..+....+-|.+++..+|.  ||+.++
T Consensus       209 ---~~~~~~~~Rs~~ei~~~f~--g~elve  233 (267)
T PF04672_consen  209 ---QAGSPGRPRSREEIAAFFD--GLELVE  233 (267)
T ss_dssp             ---HCCS----B-HHHHHHCCT--TSEE-T
T ss_pred             ---cCCCCceecCHHHHHHHcC--CCccCC
Confidence               1122567789999999986  887653

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.56  E-value=3.7e-07  Score=85.27  Aligned_cols=131  Identities=16%  Similarity=0.182  Sum_probs=90.1

Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003          156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  228 (362)
                      .+.+++|....+.+.+.+...++.+|+|.+||+|.|+..+.+.       ....+++|+|+++.++..|+-++.-. +..
T Consensus        25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~-~~~  103 (311)
T PF02384_consen   25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH-GID  103 (311)
T ss_dssp             CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT-THH
T ss_pred             cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh-ccc
Confidence            3678899999999999998888889999999999999887763       24468999999999999998765433 122


Q ss_pred             CCCEEEEEecCCCCCCC--CCcceEEEecccccCC--------CC-------------HHHHHHHHHhhccCCcEEEEEE
Q 018003          229 KENFLLVRADISRLPFA--SSSIDAVHAGAAIHCW--------SS-------------PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       229 ~~~~~~~~~d~~~~p~~--~~~fD~V~~~~vl~h~--------~d-------------~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..+..+..+|....+..  ...||+|+++--+--.        .+             ...++..+.+.||+||++.+..
T Consensus       104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il  183 (311)
T PF02384_consen  104 NSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL  183 (311)
T ss_dssp             CBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence            33456888887655433  4789999987332111        01             1258899999999999999888


Q ss_pred             Ec
Q 018003          286 YI  287 (362)
Q Consensus       286 ~~  287 (362)
                      |.
T Consensus       184 p~  185 (311)
T PF02384_consen  184 PN  185 (311)
T ss_dssp             EH
T ss_pred             cc
Confidence            75

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PLN02823 spermine synthase

Probab=98.56  E-value=4.8e-07  Score=84.66  Aligned_cols=107  Identities=17%  Similarity=0.212  Sum_probs=80.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      ..++||.||+|.|..+..+.+.....+++.+|+++++++.|++.+.... ....++++++.+|.... ....++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            3569999999999999988886555689999999999999999875421 11257899999998653 334578999997


Q ss_pred             cccccCCC-C------HHHHHH-HHHhhccCCcEEEEE
Q 018003          255 GAAIHCWS-S------PSTGVA-EISRVLRPGGVFVGT  284 (362)
Q Consensus       255 ~~vl~h~~-d------~~~~l~-~i~r~LkpgG~li~~  284 (362)
                      -.. .... .      -..+++ .+.+.|+|||++++.
T Consensus       183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            631 1110 1      125777 899999999998765

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.53  E-value=6e-07  Score=85.44  Aligned_cols=112  Identities=14%  Similarity=0.181  Sum_probs=76.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +..++.+.+++... +.++||++||+|.++..+++...  +|+|+|.++.+++.+++++...   ...++.++.+|+.+.
T Consensus       193 e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~---~~~~v~~~~~d~~~~  266 (362)
T PRK05031        193 EKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN---GIDNVQIIRMSAEEF  266 (362)
T ss_pred             HHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh---CCCcEEEEECCHHHH
Confidence            44455666665532 35799999999999998888754  8999999999999999988776   134899999998652


Q ss_pred             -C-CC--------------CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          243 -P-FA--------------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 -p-~~--------------~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       + +.              ...||+|+..--=  -.-...+++.+.   +|+++++++.
T Consensus       267 l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR--~G~~~~~l~~l~---~~~~ivyvSC  320 (362)
T PRK05031        267 TQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR--AGLDDETLKLVQ---AYERILYISC  320 (362)
T ss_pred             HHHHhhcccccccccccccCCCCCEEEECCCC--CCCcHHHHHHHH---ccCCEEEEEe
Confidence             1 10              1258999863210  001123444444   4788887764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=7.8e-07  Score=79.47  Aligned_cols=87  Identities=15%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ...++.+.+.....++..|||||+|.|.++..|++++.  .|+++|+++.+++..++++..     ..++.++.+|+...
T Consensus        16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~n~~vi~~DaLk~   88 (259)
T COG0030          16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAP-----YDNLTVINGDALKF   88 (259)
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhccc-----ccceEEEeCchhcC
Confidence            34467788888887889999999999999999999987  899999999999999998653     47999999999998


Q ss_pred             CCCCC-cceEEEecc
Q 018003          243 PFASS-SIDAVHAGA  256 (362)
Q Consensus       243 p~~~~-~fD~V~~~~  256 (362)
                      +++.- .++.|+++-
T Consensus        89 d~~~l~~~~~vVaNl  103 (259)
T COG0030          89 DFPSLAQPYKVVANL  103 (259)
T ss_pred             cchhhcCCCEEEEcC
Confidence            87643 578888763

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.49  E-value=1.1e-06  Score=83.33  Aligned_cols=107  Identities=19%  Similarity=0.210  Sum_probs=84.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceEEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH  253 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~V~  253 (362)
                      |++|||+=|=||.++..++..|. .+|++||.|...++.|+++++.+ +....++.++++|+.++-    -...+||+|+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LN-g~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi  295 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELN-GLDGDRHRFIVGDVFKWLRKAERRGEKFDLII  295 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhc-CCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence            88999999999999999988774 59999999999999999999887 445667899999986531    2234899999


Q ss_pred             eccc---------ccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          254 AGAA---------IHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       254 ~~~v---------l~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +---         ..-..|-..++..+.++|+|||.+++++-
T Consensus       296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~  337 (393)
T COG1092         296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC  337 (393)
T ss_pred             ECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            6311         01112334778999999999999998864

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.47  E-value=1.4e-06  Score=78.72  Aligned_cols=107  Identities=12%  Similarity=0.162  Sum_probs=78.8

Q ss_pred             CCeEEEEcCccch----HHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHhh------c-C------------CC--
Q 018003          178 GGNIIDASCGSGL----FSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQ------E-S------------NF--  227 (362)
Q Consensus       178 ~~~vLDiGcG~G~----~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~------~-~------------~~--  227 (362)
                      .-+|+-+||++|.    ++..+.+.+     +..+++|+|+|..+++.|++-.=.      . .            ++  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5689999999995    333334433     357999999999999999862210      0 0            00  


Q ss_pred             -----CCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEE
Q 018003          228 -----PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       228 -----~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~  284 (362)
                           ....|.|-..|+...++..+.||+|+|-+||-++..+  ..+++.++..|+|||+|++-
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                 1235667777776655356779999999999999765  47999999999999999974

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.46  E-value=1.4e-06  Score=78.89  Aligned_cols=104  Identities=17%  Similarity=0.256  Sum_probs=79.7

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      .-.++.|||+|||+|.++...++.|. .+|+++|.|+ |.++|++.++.+  ....++.++.+-++++.+| ++.|+|++
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~-MAqyA~~Lv~~N--~~~~rItVI~GKiEdieLP-Ek~DviIS  249 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASE-MAQYARKLVASN--NLADRITVIPGKIEDIELP-EKVDVIIS  249 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhH-HHHHHHHHHhcC--CccceEEEccCccccccCc-hhccEEEe
Confidence            34578999999999999999999885 5899999865 999999988875  5578999999999988765 56999997


Q ss_pred             cccccCCCCH--HHHHHHHHhhccCCcEEEE
Q 018003          255 GAAIHCWSSP--STGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       255 ~~vl~h~~d~--~~~l~~i~r~LkpgG~li~  283 (362)
                      --.-.-+-+-  ....-..++.|||.|..+=
T Consensus       250 EPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  250 EPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             ccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            5432222121  1233445699999998774

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.45  E-value=4e-07  Score=72.75  Aligned_cols=85  Identities=18%  Similarity=0.279  Sum_probs=69.1

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCc
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSS  248 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~  248 (362)
                      +..-.+.-.|+.++|+|||.|.+.....--+ ...|+|+|+++++++.++++.+..    .-++.++++|+..+.+..+.
T Consensus        40 Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeEf----EvqidlLqcdildle~~~g~  114 (185)
T KOG3420|consen   40 IHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEEF----EVQIDLLQCDILDLELKGGI  114 (185)
T ss_pred             HHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHHh----hhhhheeeeeccchhccCCe
Confidence            3344455568899999999999985554433 358999999999999999988876    56789999999998878899


Q ss_pred             ceEEEecccc
Q 018003          249 IDAVHAGAAI  258 (362)
Q Consensus       249 fD~V~~~~vl  258 (362)
                      ||.++.+.-+
T Consensus       115 fDtaviNppF  124 (185)
T KOG3420|consen  115 FDTAVINPPF  124 (185)
T ss_pred             EeeEEecCCC
Confidence            9999987654

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.44  E-value=1.4e-06  Score=82.59  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=76.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +..++.+.+++... +.+|||++||+|.++..+++...  .|+|+|+++++++.|++++..+   ...++.++.+|+.++
T Consensus       184 ~~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~---~~~~v~~~~~d~~~~  257 (353)
T TIGR02143       184 IKMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN---NIDNVQIIRMSAEEF  257 (353)
T ss_pred             HHHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc---CCCcEEEEEcCHHHH
Confidence            34455566665532 24799999999999998888764  9999999999999999998776   234799999998653


Q ss_pred             CCC----------C------CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          243 PFA----------S------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 p~~----------~------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .-.          .      ..||+|+..--  .-.-...+++.+.   +|+++++++.
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~---~~~~ivYvsC  311 (353)
T TIGR02143       258 TQAMNGVREFRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQ---AYERILYISC  311 (353)
T ss_pred             HHHHhhccccccccccccccCCCCEEEECCC--CCCCcHHHHHHHH---cCCcEEEEEc
Confidence            210          1      13798886321  0001124444443   4788888775

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.43  E-value=4.7e-06  Score=68.46  Aligned_cols=104  Identities=31%  Similarity=0.486  Sum_probs=75.9

Q ss_pred             EEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCC-EEEEEecCCC--CCCCC-CcceEEEec
Q 018003          181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISR--LPFAS-SSIDAVHAG  255 (362)
Q Consensus       181 vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~--~p~~~-~~fD~V~~~  255 (362)
                      ++|+|||+|... .+...... ..++|+|+++.++..++......    ... +.+..+|...  +++.. ..||++ ..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGA----GLGLVDFVVADALGGVLPFEDSASFDLV-IS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhc----CCCceEEEEeccccCCCCCCCCCceeEE-ee
Confidence            999999999966 33333222 37899999999999855543211    111 6788888776  77776 489999 55


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCC
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  290 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~  290 (362)
                      ....+..++...+.++.+.|+|+|.+++.......
T Consensus       126 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         126 LLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             eeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            55444444889999999999999999998877543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.43  E-value=1.8e-06  Score=78.72  Aligned_cols=108  Identities=17%  Similarity=0.237  Sum_probs=77.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C--CCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p--~~~~~fD~V~  253 (362)
                      .+++|||+=|=||.++..++..|. .+|+.+|.|..+++.++++++.+ +....++++++.|+.+. .  -..++||+|+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lN-g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALN-GLDLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHT-T-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            378999999999999998887663 58999999999999999999887 34456899999998642 1  1246899999


Q ss_pred             eccc-c-----cCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          254 AGAA-I-----HCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       254 ~~~v-l-----~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +--- +     .-..+...++..+.++|+|||.|++.+-
T Consensus       201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~sc  239 (286)
T PF10672_consen  201 LDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSC  239 (286)
T ss_dssp             E--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE-
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcC
Confidence            6411 0     0012334788899999999999886653

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.42  E-value=1.7e-06  Score=76.37  Aligned_cols=86  Identities=13%  Similarity=0.160  Sum_probs=72.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ..++.+......+++..|||+|.|||.++..+.+.+.  .|+++|+++.|+....++++.-  .......++.+|+...+
T Consensus        45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gt--p~~~kLqV~~gD~lK~d  120 (315)
T KOG0820|consen   45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGT--PKSGKLQVLHGDFLKTD  120 (315)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCC--CccceeeEEecccccCC
Confidence            4456777777778899999999999999999999987  9999999999999999998765  11368999999998876


Q ss_pred             CCCCcceEEEec
Q 018003          244 FASSSIDAVHAG  255 (362)
Q Consensus       244 ~~~~~fD~V~~~  255 (362)
                      ++  .||.++++
T Consensus       121 ~P--~fd~cVsN  130 (315)
T KOG0820|consen  121 LP--RFDGCVSN  130 (315)
T ss_pred             Cc--ccceeecc
Confidence            43  59999985

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.41  E-value=8.6e-06  Score=75.65  Aligned_cols=112  Identities=14%  Similarity=0.059  Sum_probs=80.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHh-hcCCCCCCCEEE--EEecCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ-QESNFPKENFLL--VRADIS  240 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~--~~~d~~  240 (362)
                      .+.+.++  ++..++|+|||.|.-+..|.+.    +....++++|+|.++++.+.+++. ..    .+.+.+  +++|+.
T Consensus        69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~----~p~l~v~~l~gdy~  142 (319)
T TIGR03439        69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN----FSHVRCAGLLGTYD  142 (319)
T ss_pred             HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc----CCCeEEEEEEecHH
Confidence            3444443  3668999999999876655443    334689999999999999999988 44    455554  888885


Q ss_pred             CC----CC--CCCcceEEEecc-cccCCCCHH--HHHHHHHh-hccCCcEEEEEE
Q 018003          241 RL----PF--ASSSIDAVHAGA-AIHCWSSPS--TGVAEISR-VLRPGGVFVGTT  285 (362)
Q Consensus       241 ~~----p~--~~~~fD~V~~~~-vl~h~~d~~--~~l~~i~r-~LkpgG~li~~~  285 (362)
                      +.    +-  ......+++..+ +|.+++...  .+|+++++ .|+|||.|++..
T Consensus       143 ~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       143 DGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             HHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence            52    21  123356666654 788886554  78999999 999999988854

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.39  E-value=1.1e-06  Score=80.64  Aligned_cols=95  Identities=17%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-  243 (362)
                      ++.+.+.+.+.+++.+||.+||.|..+..+++..+ .+.|+|+|.++.+++.+++++..     ..++.++++|+..+. 
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----~~ri~~i~~~f~~l~~   82 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----FGRFTLVHGNFSNLKE   82 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----CCcEEEEeCCHHHHHH
Confidence            45677777777889999999999999999999864 57999999999999999987643     258999999998753 


Q ss_pred             -CCCC--cceEEEecccc--cCCCCHH
Q 018003          244 -FASS--SIDAVHAGAAI--HCWSSPS  265 (362)
Q Consensus       244 -~~~~--~fD~V~~~~vl--~h~~d~~  265 (362)
                       .+.+  ++|.|++....  +++.++.
T Consensus        83 ~l~~~~~~vDgIl~DLGvSs~Qld~~~  109 (296)
T PRK00050         83 VLAEGLGKVDGILLDLGVSSPQLDDAE  109 (296)
T ss_pred             HHHcCCCccCEEEECCCccccccCCCc
Confidence             1122  79999986543  4455554

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.38  E-value=3.9e-06  Score=76.75  Aligned_cols=117  Identities=19%  Similarity=0.142  Sum_probs=76.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC--CC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RL  242 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~  242 (362)
                      +..+...+..-...+|||+|||+|..+.++.+..+ ..+++++|.|+.|++.++..++...+  .....+ ..++.  ..
T Consensus        22 l~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--~~~~~~-~~~~~~~~~   98 (274)
T PF09243_consen   22 LSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--NRNAEW-RRVLYRDFL   98 (274)
T ss_pred             HHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--cccchh-hhhhhcccc
Confidence            44555555444567999999999988777666432 34899999999999999987665411  111111 11111  12


Q ss_pred             CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccC
Q 018003          243 PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ++  ...|+|++.++|..+++.  ..+++.+.+.+++  .|++.++...
T Consensus        99 ~~--~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~  143 (274)
T PF09243_consen   99 PF--PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP  143 (274)
T ss_pred             cC--CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence            22  234999999999998872  2455566555555  8888888654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.37  E-value=1.2e-06  Score=75.04  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=86.8

Q ss_pred             CCcHHHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003          160 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (362)
                      |..+...+.+-..+..  -.+.++||+=||+|.++..+..+|. .+|+.+|.++..++..+++++..  ....++.++..
T Consensus        23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l--~~~~~~~v~~~   99 (183)
T PF03602_consen   23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKL--GLEDKIRVIKG   99 (183)
T ss_dssp             SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH--T-GGGEEEEES
T ss_pred             CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHh--CCCcceeeecc
Confidence            3445555555555554  3688999999999999999998884 58999999999999999998876  11235888888


Q ss_pred             cCCC-CC---CCCCcceEEEecccccCCCC-HHHHHHHHH--hhccCCcEEEEEEEcc
Q 018003          238 DISR-LP---FASSSIDAVHAGAAIHCWSS-PSTGVAEIS--RVLRPGGVFVGTTYIV  288 (362)
Q Consensus       238 d~~~-~p---~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~--r~LkpgG~li~~~~~~  288 (362)
                      |... ++   -....||+|++.--... .. ...++..+.  .+|+++|.+++.....
T Consensus       100 d~~~~l~~~~~~~~~fDiIflDPPY~~-~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  100 DAFKFLLKLAKKGEKFDIIFLDPPYAK-GLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             SHHHHHHHHHHCTS-EEEEEE--STTS-CHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CHHHHHHhhcccCCCceEEEECCCccc-chHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            8533 21   24678999998643322 22 256777776  7999999999887654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=4.8e-06  Score=80.51  Aligned_cols=110  Identities=21%  Similarity=0.302  Sum_probs=87.5

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .+..++...+++...++.++||+=||.|.|+..++++..  +|+|+|+++++++.|+++++.+   +..|+.+..+++++
T Consensus       278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n---~i~N~~f~~~~ae~  352 (432)
T COG2265         278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAAN---GIDNVEFIAGDAEE  352 (432)
T ss_pred             HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHc---CCCcEEEEeCCHHH
Confidence            355677788888887888999999999999999998765  9999999999999999999887   35669999999987


Q ss_pred             CCCC---CCcceEEEecccccCCCCHH------HHHHHHHhhccCCcEEEEEE
Q 018003          242 LPFA---SSSIDAVHAGAAIHCWSSPS------TGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       242 ~p~~---~~~fD~V~~~~vl~h~~d~~------~~l~~i~r~LkpgG~li~~~  285 (362)
                      ....   ...+|+|+.        ||.      .+++.+.+ ++|..+++++.
T Consensus       353 ~~~~~~~~~~~d~Vvv--------DPPR~G~~~~~lk~l~~-~~p~~IvYVSC  396 (432)
T COG2265         353 FTPAWWEGYKPDVVVV--------DPPRAGADREVLKQLAK-LKPKRIVYVSC  396 (432)
T ss_pred             HhhhccccCCCCEEEE--------CCCCCCCCHHHHHHHHh-cCCCcEEEEeC
Confidence            6533   247899985        442      44555544 57777888764

>PRK00536 speE spermidine synthase; Provisional

Probab=98.34  E-value=4.9e-06  Score=74.99  Aligned_cols=99  Identities=13%  Similarity=0.131  Sum_probs=76.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      ..++||=||.|.|..++.+.+..  .+|+.+|+++++++.+++.+.... +...++++++.. +.+  ...++||+|+.-
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvD  146 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICL  146 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEc
Confidence            46899999999999999999874  399999999999999999654321 234677887752 221  123689999976


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..     .+..+.+.+++.|+|||+++...
T Consensus       147 s~-----~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        147 QE-----PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CC-----CChHHHHHHHHhcCCCcEEEECC
Confidence            42     45678899999999999999753

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.32  E-value=1.7e-06  Score=77.80  Aligned_cols=111  Identities=13%  Similarity=0.115  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCC-cceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASS-SIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~-~fD~V~  253 (362)
                      ...+||-||.|.|..+..+.+..+..+++.+|+++..++.|++.+.... +...++++++.+|.... .-..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            4679999999999999999887655799999999999999999876431 11257999999998543 11233 899999


Q ss_pred             ecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .-..-..-+.+    ..+++.+.+.|+|||++++....
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~  193 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS  193 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence            75432221222    47899999999999999987643

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.32  E-value=1.3e-07  Score=80.01  Aligned_cols=110  Identities=18%  Similarity=0.158  Sum_probs=80.6

Q ss_pred             HHHHHHHHhhcCCC---CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003          163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (362)
Q Consensus       163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  239 (362)
                      ++..+.++..-++.   .+.++||+|+|.|..+..++....  +|++.|+|..|..+.+++          +..++.. +
T Consensus        95 e~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk----------~ynVl~~-~  161 (288)
T KOG3987|consen   95 EEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK----------NYNVLTE-I  161 (288)
T ss_pred             HHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc----------CCceeee-h
Confidence            44445555443332   346999999999999998887654  899999999999888774          2222211 1


Q ss_pred             CCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccC-CcEEEEEEE
Q 018003          240 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTY  286 (362)
Q Consensus       240 ~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp-gG~li~~~~  286 (362)
                       +..--+-+||+|.|..+|..-.+|-++|+.|+.+|+| .|+++++..
T Consensus       162 -ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV  208 (288)
T KOG3987|consen  162 -EWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV  208 (288)
T ss_pred             -hhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence             1111234699999999998888999999999999999 888887543

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.30  E-value=5.7e-06  Score=74.54  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=102.7

Q ss_pred             HHHHHhhcCC----CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHh--hcC--------------
Q 018003          166 FELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--QES--------------  225 (362)
Q Consensus       166 ~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~--~~~--------------  225 (362)
                      ++.|..+.+.    ....+||--|||.|+++..++..|+  .+-|-|.|--|+--..-.+.  +..              
T Consensus       135 i~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn  212 (369)
T KOG2798|consen  135 IEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSN  212 (369)
T ss_pred             HHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccc
Confidence            4455554443    2346899999999999999999998  67777888776543222210  000              


Q ss_pred             ---------------------CCCCCCEEEEEecCCCC-C--CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEE
Q 018003          226 ---------------------NFPKENFLLVRADISRL-P--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF  281 (362)
Q Consensus       226 ---------------------~~~~~~~~~~~~d~~~~-p--~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~l  281 (362)
                                           +..........||+.+. +  -..+.||+|+..+-+..-.+....|+.|..+|||||++
T Consensus       213 ~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvW  292 (369)
T KOG2798|consen  213 SLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVW  292 (369)
T ss_pred             ccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEE
Confidence                                 11222333445666443 2  22357999999988888778889999999999999999


Q ss_pred             EEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003          282 VGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       282 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~  339 (362)
                      +=..|          ++.++....    .......--++.+++..+.+..||++++..
T Consensus       293 iNlGP----------LlYHF~d~~----g~~~~~siEls~edl~~v~~~~GF~~~ke~  336 (369)
T KOG2798|consen  293 INLGP----------LLYHFEDTH----GVENEMSIELSLEDLKRVASHRGFEVEKER  336 (369)
T ss_pred             Eeccc----------eeeeccCCC----CCcccccccccHHHHHHHHHhcCcEEEEee
Confidence            84433          222221100    000112345789999999999999988776

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=1.8e-05  Score=68.09  Aligned_cols=100  Identities=23%  Similarity=0.290  Sum_probs=73.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CCC
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  246 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~~  246 (362)
                      .++.+|+|+|+..|.++..+++.. ....|+|+|+.+-              .+.+++.++++|+..-+        +..
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~--------------~~~~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM--------------KPIPGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc--------------ccCCCceEEeeeccCccHHHHHHHHcCC
Confidence            458999999999999999988873 4446999999772              23577999999997643        334


Q ss_pred             CcceEEEecccc--------cCCCCH---HHHHHHHHhhccCCcEEEEEEEccC
Q 018003          247 SSIDAVHAGAAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       247 ~~fD~V~~~~vl--------~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ..+|+|++-..=        +|....   ..++.-+..+|+|||.+++-.+..+
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence            557999965331        222111   2456667789999999999887665

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.28  E-value=2.5e-05  Score=72.76  Aligned_cols=116  Identities=19%  Similarity=0.211  Sum_probs=94.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      +..++++....  |.+|||+=+|.|.|+..+++.+.. .|+++|++|.+++..+++++.+  .....+..+++|....+.
T Consensus       178 ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN--~v~~~v~~i~gD~rev~~  252 (341)
T COG2520         178 ERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLN--KVEGRVEPILGDAREVAP  252 (341)
T ss_pred             HHHHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhc--CccceeeEEeccHHHhhh
Confidence            34556666555  889999999999999999999863 3999999999999999998876  334458899999988875


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ..+.+|-|++...    .+-..++....+.+++||++-..+...+
T Consensus       253 ~~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e  293 (341)
T COG2520         253 ELGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE  293 (341)
T ss_pred             ccccCCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence            5588999998654    4556788999999999999988776653

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.28  E-value=2.3e-06  Score=74.44  Aligned_cols=117  Identities=16%  Similarity=0.132  Sum_probs=70.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc------CCCCCCCEEEEEecCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SNFPKENFLLVRADIS  240 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~d~~  240 (362)
                      ..+.+.++..++...+|+|||.|.....++........+|||+.+...+.|++..+..      -+....++.+..+|+.
T Consensus        32 ~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl  111 (205)
T PF08123_consen   32 SKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL  111 (205)
T ss_dssp             HHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred             HHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence            4566677777889999999999998877766544346999999999888777543221      0223467888899987


Q ss_pred             CCCCCC---CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          241 RLPFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       241 ~~p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      +.++..   ...|+|+++...-. ++....|.++...||+|-+++-.
T Consensus       112 ~~~~~~~~~s~AdvVf~Nn~~F~-~~l~~~L~~~~~~lk~G~~IIs~  157 (205)
T PF08123_consen  112 DPDFVKDIWSDADVVFVNNTCFD-PDLNLALAELLLELKPGARIIST  157 (205)
T ss_dssp             THHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred             ccHhHhhhhcCCCEEEEeccccC-HHHHHHHHHHHhcCCCCCEEEEC
Confidence            654211   34699999876421 23446678888899998887643

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.25  E-value=8.7e-06  Score=81.55  Aligned_cols=97  Identities=18%  Similarity=0.159  Sum_probs=67.3

Q ss_pred             CCCCCcHHHHHHHHhhcCCC-------CCCeEEEEcCccchHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHH
Q 018003          157 GGFPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFV  221 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~  221 (362)
                      +.+++|....+.+.+.+...       ...+|||.|||+|.++..+....+        ...++|+|+++.++..++.++
T Consensus         4 GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987         4 GTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             cccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            55677777777777665321       345899999999999988876532        247899999999999999987


Q ss_pred             hhcCCCCCCCEEEEEecCCCCC-----CCCCcceEEEecc
Q 018003          222 QQESNFPKENFLLVRADISRLP-----FASSSIDAVHAGA  256 (362)
Q Consensus       222 ~~~~~~~~~~~~~~~~d~~~~p-----~~~~~fD~V~~~~  256 (362)
                      ....   ...+.+...|.....     -..+.||+|+.+-
T Consensus        84 ~~~~---~~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNP  120 (524)
T TIGR02987        84 GEFA---LLEINVINFNSLSYVLLNIESYLDLFDIVITNP  120 (524)
T ss_pred             hhcC---CCCceeeecccccccccccccccCcccEEEeCC
Confidence            6651   123445555543211     1125799999873

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=2.3e-05  Score=74.29  Aligned_cols=119  Identities=25%  Similarity=0.297  Sum_probs=90.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-  243 (362)
                      ......+.+.+|.+|||+.++.|.=+..+++...+  ..|+++|.++.-++..++++++.   +..++..+..|...++ 
T Consensus       146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl---G~~nv~~~~~d~~~~~~  222 (355)
T COG0144         146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL---GVRNVIVVNKDARRLAE  222 (355)
T ss_pred             HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc---CCCceEEEecccccccc
Confidence            44456788899999999999999988888887653  45799999999999999999887   3556788888876654 


Q ss_pred             -CC-CCcceEEEec------ccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 -FA-SSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 -~~-~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                       .. .+.||.|+.-      +++.-=|+.                ..+|....++|||||.|+.+|=..
T Consensus       223 ~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         223 LLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             cccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence             12 2359999953      344222221                267999999999999999887443

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.22  E-value=5.6e-07  Score=72.67  Aligned_cols=59  Identities=24%  Similarity=0.286  Sum_probs=48.8

Q ss_pred             CEEEEEecCCCCCCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccC
Q 018003          231 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       231 ~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      .+.+++-.....+|.+++.|+|.+.+++||+.-.  ..++++++|.|||||.|-++.|...
T Consensus        30 ~vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          30 EVDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             ccchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            4555555555678899999999999999999643  4789999999999999999998753

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.18  E-value=3.1e-05  Score=80.10  Aligned_cols=139  Identities=17%  Similarity=0.094  Sum_probs=91.7

Q ss_pred             HhhhhhhhhccCCCCCcHHHHHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhC-------------------------
Q 018003          146 YERGWRQNFVWGGFPGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG-------------------------  199 (362)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~-------------------------  199 (362)
                      ..|+||...  ..-+-.+..+..++...+- .++..++|..||+|.++...+...                         
T Consensus       160 ~rRgyr~~~--~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w  237 (702)
T PRK11783        160 HQRGYRQAT--GEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALW  237 (702)
T ss_pred             hhccCccCC--CCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHH
Confidence            344555543  2222334455555555443 457899999999999987775420                         


Q ss_pred             -----------------CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC--CCcceEEEecccc-c
Q 018003          200 -----------------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAAI-H  259 (362)
Q Consensus       200 -----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~--~~~fD~V~~~~vl-~  259 (362)
                                       ....++|+|+++.+++.|++++...  +....+.+.++|+.+++.+  .++||+|+++--. +
T Consensus       238 ~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~--g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~  315 (702)
T PRK11783        238 QELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRA--GVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGE  315 (702)
T ss_pred             HHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHc--CCCcceEEEeCChhhcccccccCCCCEEEECCCCcC
Confidence                             0126999999999999999999876  2345689999999887644  3579999998432 2


Q ss_pred             CCC---CHHHHHHHHHhhcc---CCcEEEEEEEcc
Q 018003          260 CWS---SPSTGVAEISRVLR---PGGVFVGTTYIV  288 (362)
Q Consensus       260 h~~---d~~~~l~~i~r~Lk---pgG~li~~~~~~  288 (362)
                      .+.   +...+.+++.+.||   +|+.+++.++..
T Consensus       316 r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~  350 (702)
T PRK11783        316 RLGEEPALIALYSQLGRRLKQQFGGWNAALFSSSP  350 (702)
T ss_pred             ccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            222   22334444444444   899988877643

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=2.9e-05  Score=67.32  Aligned_cols=113  Identities=16%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC-
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP-  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p-  243 (362)
                      ..+...++...+++.||||.=||.-+..++..-| +++|+++|++++..+.+.+..+..  +...++.+++++..+ ++ 
T Consensus        63 ~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--gv~~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   63 QFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--GVDHKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--cccceeeeeecchhhhHHH
Confidence            3344444444467999999888888777777643 579999999999999998877665  557899999998754 21 


Q ss_pred             ----CCCCcceEEEecccccCCCC-HHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSS-PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d-~~~~l~~i~r~LkpgG~li~~~  285 (362)
                          ...++||.++.    .|..+ -.....++.+++|+||++++--
T Consensus       141 l~~~~~~~tfDfaFv----DadK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  141 LLADGESGTFDFAFV----DADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHhcCCCCceeEEEE----ccchHHHHHHHHHHHhhcccccEEEEec
Confidence                34678999994    55543 3478999999999999999764

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=1.2e-06  Score=58.70  Aligned_cols=46  Identities=26%  Similarity=0.480  Sum_probs=39.6

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.+++++||.|+++|....         +.+.+.|+.|+..|++.+|++.++.++
T Consensus         4 ~LLeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~e   49 (60)
T COG2835           4 RLLEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDE   49 (60)
T ss_pred             hhheeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchh
Confidence            5688999999999988765         236899999999999999999888753

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.14  E-value=1.5e-05  Score=72.55  Aligned_cols=105  Identities=15%  Similarity=0.174  Sum_probs=78.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ...++.+.+.+...++..|||||+|+|.++..+.+.+.  +++++|+++.+.+..++++..     .+++.++.+|+..+
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~~-----~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFAS-----NPNVEVINGDFLKW   88 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCTT-----CSSEEEEES-TTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhhh-----cccceeeecchhcc
Confidence            45567888888877889999999999999999999985  999999999999999997653     47999999999988


Q ss_pred             CCCC---CcceEEEecccccCCCCHHHHHHHHHhhccC
Q 018003          243 PFAS---SSIDAVHAGAAIHCWSSPSTGVAEISRVLRP  277 (362)
Q Consensus       243 p~~~---~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkp  277 (362)
                      ....   .....|+++--. +  --..++..+...-+.
T Consensus        89 ~~~~~~~~~~~~vv~NlPy-~--is~~il~~ll~~~~~  123 (262)
T PF00398_consen   89 DLYDLLKNQPLLVVGNLPY-N--ISSPILRKLLELYRF  123 (262)
T ss_dssp             CGGGHCSSSEEEEEEEETG-T--GHHHHHHHHHHHGGG
T ss_pred             ccHHhhcCCceEEEEEecc-c--chHHHHHHHhhcccc
Confidence            7554   334566654322 2  223456666553333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=98.14  E-value=2.3e-05  Score=65.96  Aligned_cols=152  Identities=18%  Similarity=0.170  Sum_probs=97.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHH---HH-HHH-HHhhcCCCCCCCEEEEEecCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML---KQ-CYE-FVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~---~~-a~~-~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .++.+.+.+++.+|+|+-.|.|++++.+... ++.+.|+++-+.+...   .. .+. .+.++  ....|++.+-.+...
T Consensus        39 E~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e--~~~aN~e~~~~~~~A  116 (238)
T COG4798          39 EVLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE--PVYANVEVIGKPLVA  116 (238)
T ss_pred             ceeEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh--hhhhhhhhhCCcccc
Confidence            4566777888999999999999999999876 5656788876654311   00 110 01100  113455555556555


Q ss_pred             CCCCCCcceEEEecccccCC-------CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccc
Q 018003          242 LPFASSSIDAVHAGAAIHCW-------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGF  314 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~-------~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (362)
                      ++ +.+..|++.....-|-+       ..-.++.+++.+.|||||++++.+...+......               ... 
T Consensus       117 ~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~---------------dt~-  179 (238)
T COG4798         117 LG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS---------------DTI-  179 (238)
T ss_pred             cC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh---------------hhh-
Confidence            55 44556777653322111       1235789999999999999999987764321111               111 


Q ss_pred             ccccCCHHHHHHHHHHCCCEEEEE
Q 018003          315 SIPVLGFDDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       315 ~~~~~s~~~l~~ll~~~Gf~~v~~  338 (362)
                      ..++.+...+....+++||.....
T Consensus       180 ~~~ri~~a~V~a~veaaGFkl~ae  203 (238)
T COG4798         180 TLHRIDPAVVIAEVEAAGFKLEAE  203 (238)
T ss_pred             hhcccChHHHHHHHHhhcceeeee
Confidence            456788899999999999976544

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.13  E-value=4.1e-06  Score=71.78  Aligned_cols=97  Identities=23%  Similarity=0.344  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CC--
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA--  245 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~--  245 (362)
                      ++.++||+||++|.++..+.+++ +...|+|+|+.+..              ...++..+++|+....        +.  
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~--------------~~~~~~~i~~d~~~~~~~~~i~~~~~~~   88 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD--------------PLQNVSFIQGDITNPENIKDIRKLLPES   88 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG--------------S-TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc--------------cccceeeeecccchhhHHHhhhhhcccc
Confidence            45899999999999999999987 44699999998750              1246666666664321        11  


Q ss_pred             CCcceEEEecccccCCCC----H-------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAGAAIHCWSS----P-------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d----~-------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .+.+|+|++-.+...-.+    .       ...+.-+.+.|+|||.+++....
T Consensus        89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            268999999874333222    1       13455566789999999988765

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.13  E-value=6e-05  Score=63.95  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=91.8

Q ss_pred             CCcHHHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003          160 PGPEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (362)
                      |+.+...+.+-.++.+  -.|.++||+=+|+|.++.....+|. ..++.+|.+...+...+++++..  ....+..++..
T Consensus        24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l--~~~~~~~~~~~  100 (187)
T COG0742          24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL--GLEGEARVLRN  100 (187)
T ss_pred             CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh--CCccceEEEee
Confidence            4456666777777776  5789999999999999999999875 58999999999999999998876  12367888888


Q ss_pred             cCCCC-CCCCC--cceEEEecccccC-CCCHHHHHHH--HHhhccCCcEEEEEEEc
Q 018003          238 DISRL-PFASS--SIDAVHAGAAIHC-WSSPSTGVAE--ISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       238 d~~~~-p~~~~--~fD~V~~~~vl~h-~~d~~~~l~~--i~r~LkpgG~li~~~~~  287 (362)
                      |.... +-...  .||+|+.---.+. +.++...+..  -..+|+|+|.+++....
T Consensus       101 da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~  156 (187)
T COG0742         101 DALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK  156 (187)
T ss_pred             cHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence            88643 11222  4999997654431 1122333333  45789999999987654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.12  E-value=3.5e-05  Score=67.20  Aligned_cols=130  Identities=15%  Similarity=0.089  Sum_probs=95.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +.+++|||+|.|.-+..++-..|+.+++-+|....-+.+.++-..+.   +..|+.++++.++.+.-....||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL---~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL---GLENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh---CCCCeEEehhhHhhcccccccCcEEEeehc
Confidence            57999999999999998887778889999999988777777655554   356899999999987632222999999876


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                          .+...++.-+..++|+||.+++.-..            ...+                -..+.++.....|+.+.+
T Consensus       145 ----a~L~~l~e~~~pllk~~g~~~~~k~~------------~~~~----------------e~~e~~~a~~~~~~~~~~  192 (215)
T COG0357         145 ----ASLNVLLELCLPLLKVGGGFLAYKGL------------AGKD----------------ELPEAEKAILPLGGQVEK  192 (215)
T ss_pred             ----cchHHHHHHHHHhcccCCcchhhhHH------------hhhh----------------hHHHHHHHHHhhcCcEEE
Confidence                55667788888999999987632111            0111                123567777888887776


Q ss_pred             EEEec
Q 018003          338 KLFYG  342 (362)
Q Consensus       338 ~~~~g  342 (362)
                      +....
T Consensus       193 ~~~~~  197 (215)
T COG0357         193 VFSLT  197 (215)
T ss_pred             EEEee
Confidence            65543

>PRK11827 hypothetical protein; Provisional

Probab=98.09  E-value=1.6e-06  Score=58.91  Aligned_cols=46  Identities=15%  Similarity=0.264  Sum_probs=38.4

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      ..+.+++||.|+++|....         ....+.|..|+..|++++|++.++.++
T Consensus         4 ~LLeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~de   49 (60)
T PRK11827          4 RLLEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETE   49 (60)
T ss_pred             HHHhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHH
Confidence            4578999999999997653         125799999999999999999888754

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.09  E-value=5.6e-05  Score=65.83  Aligned_cols=123  Identities=11%  Similarity=0.031  Sum_probs=84.3

Q ss_pred             EEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCCCcceEEEeccccc
Q 018003          181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAGAAIH  259 (362)
Q Consensus       181 vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~~~fD~V~~~~vl~  259 (362)
                      |.||||-.|.+..+|.+++....++++|+++..++.|+++++..  +...++.+..+|-.. ++ +.+..|.|+..++=-
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--~l~~~i~~rlgdGL~~l~-~~e~~d~ivIAGMGG   77 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--GLEDRIEVRLGDGLEVLK-PGEDVDTIVIAGMGG   77 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--T-TTTEEEEE-SGGGG---GGG---EEEEEEE-H
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--CCcccEEEEECCcccccC-CCCCCCEEEEecCCH
Confidence            68999999999999999997778999999999999999999886  446789999999543 43 222378888766522


Q ss_pred             CCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003          260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       260 h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~  339 (362)
                      .  -....|.+....++....|++. |+                               -....++++|.+.||..++..
T Consensus        78 ~--lI~~ILe~~~~~~~~~~~lILq-P~-------------------------------~~~~~LR~~L~~~gf~I~~E~  123 (205)
T PF04816_consen   78 E--LIIEILEAGPEKLSSAKRLILQ-PN-------------------------------THAYELRRWLYENGFEIIDED  123 (205)
T ss_dssp             H--HHHHHHHHTGGGGTT--EEEEE-ES-------------------------------S-HHHHHHHHHHTTEEEEEEE
T ss_pred             H--HHHHHHHhhHHHhccCCeEEEe-CC-------------------------------CChHHHHHHHHHCCCEEEEeE
Confidence            1  1335666666666655556653 22                               234579999999999877554


Q ss_pred             E
Q 018003          340 F  340 (362)
Q Consensus       340 ~  340 (362)
                      -
T Consensus       124 l  124 (205)
T PF04816_consen  124 L  124 (205)
T ss_dssp             E
T ss_pred             E
Confidence            3

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.07  E-value=3.8e-05  Score=73.62  Aligned_cols=102  Identities=25%  Similarity=0.422  Sum_probs=88.0

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccccc
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH  259 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~  259 (362)
                      ++|-+|||.-.+...+.+.|. ..++-+|.|+-.++....+....    .+...+...|+..+.|++++||+|+.-..++
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~-~dI~~iD~S~V~V~~m~~~~~~~----~~~~~~~~~d~~~l~fedESFdiVIdkGtlD  125 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGF-EDITNIDSSSVVVAAMQVRNAKE----RPEMQMVEMDMDQLVFEDESFDIVIDKGTLD  125 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCC-CCceeccccHHHHHHHHhccccC----CcceEEEEecchhccCCCcceeEEEecCccc
Confidence            899999999999999988874 58999999999888887765443    5788999999999999999999999999998


Q ss_pred             CCCCH----------HHHHHHHHhhccCCcEEEEEEE
Q 018003          260 CWSSP----------STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       260 h~~d~----------~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ++-.+          ...+.+++|+|+|||+++..+.
T Consensus       126 al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  126 ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            88422          1458899999999999888776

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.03  E-value=7.8e-05  Score=70.96  Aligned_cols=102  Identities=18%  Similarity=0.148  Sum_probs=81.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-CCCcceEEEec
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-~~~~fD~V~~~  255 (362)
                      +.+|||+-||+|..+..++.+.+ ...|+++|+++.+++.++++++.+   ...++.++++|+..+-. ....||+|...
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N---~~~~~~v~~~Da~~~l~~~~~~fDvIdlD  121 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN---SVENIEVPNEDAANVLRYRNRKFHVIDID  121 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCcEEEEchhHHHHHHHhCCCCCEEEeC
Confidence            35899999999999999988732 258999999999999999998776   12468899999865421 13579999874


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      -    ...|..++..+.+.+++||.+.++..
T Consensus       122 P----fGs~~~fld~al~~~~~~glL~vTaT  148 (374)
T TIGR00308       122 P----FGTPAPFVDSAIQASAERGLLLVTAT  148 (374)
T ss_pred             C----CCCcHHHHHHHHHhcccCCEEEEEec
Confidence            4    24667899999999999999999843

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=98.02  E-value=2e-05  Score=66.79  Aligned_cols=107  Identities=20%  Similarity=0.270  Sum_probs=76.9

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC----CCCCCCEEEEEecCCC-CCCCCCcceEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NFPKENFLLVRADISR-LPFASSSIDAV  252 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~----~~~~~~~~~~~~d~~~-~p~~~~~fD~V  252 (362)
                      .-.+.|||||.|.++..++...|+..+.|+|+-...-++.+++++..+    ++...++.+...+... +|   +-|.--
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp---n~f~kg  137 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP---NFFEKG  137 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc---chhhhc
Confidence            347999999999999999999999999999999999999998876553    2224566666665543 22   112222


Q ss_pred             EecccccCCCCHH-------------HHHHHHHhhccCCcEEEEEEEc
Q 018003          253 HAGAAIHCWSSPS-------------TGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       253 ~~~~vl~h~~d~~-------------~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      -..-.+..++||.             ..+.+..-+|++||.++..+-.
T Consensus       138 qLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  138 QLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             ccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence            2222334445653             5688889999999999987754

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.01  E-value=0.00012  Score=68.79  Aligned_cols=138  Identities=17%  Similarity=0.077  Sum_probs=96.1

Q ss_pred             HHhhhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-----------------------
Q 018003          145 IYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-----------------------  201 (362)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----------------------  201 (362)
                      +..|+||..-  ..-+-.+.....+...-+..++..++|-=||+|.++...+..+.+                       
T Consensus       161 LhkRGyR~~~--g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~  238 (381)
T COG0116         161 LHKRGYRVYD--GPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWD  238 (381)
T ss_pred             hhhccccccC--CCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHH
Confidence            3456666543  222223444556666666667789999999999999888776531                       


Q ss_pred             ---------C-------EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc-cCCCCH
Q 018003          202 ---------S-------LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HCWSSP  264 (362)
Q Consensus       202 ---------~-------~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl-~h~~d~  264 (362)
                               .       .++|+|+++.+++.|+.+++..  +..+.+.|.++|+..++-+-+.+|+|+++--- +-+.+.
T Consensus       239 ~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~A--Gv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~  316 (381)
T COG0116         239 KLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAA--GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSE  316 (381)
T ss_pred             HHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhc--CCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCCh
Confidence                     1       2779999999999999998886  55778999999999887544789999998432 222232


Q ss_pred             ---H----HHHHHHHhhccCCcEEEEEEE
Q 018003          265 ---S----TGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       265 ---~----~~l~~i~r~LkpgG~li~~~~  286 (362)
                         .    .+.+.+++.++-.+.+++++.
T Consensus       317 ~~v~~LY~~fg~~lk~~~~~ws~~v~tt~  345 (381)
T COG0116         317 ALVAKLYREFGRTLKRLLAGWSRYVFTTS  345 (381)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence               2    344455566666677776653

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=6.9e-06  Score=66.97  Aligned_cols=123  Identities=16%  Similarity=0.065  Sum_probs=79.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC--C
Q 018003          166 FELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--L  242 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~  242 (362)
                      ...+++....-.|.+|||+|.|- |.-+..++...++..|...|-++..++-.++....+............-+...  .
T Consensus        18 a~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs   97 (201)
T KOG3201|consen   18 AWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS   97 (201)
T ss_pred             HHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH
Confidence            33444443334578999999995 55555566666778999999999999888876543200011111111111111  1


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .....+||.|++...+-.-.--..+++.|.++|+|.|..++..|-+
T Consensus        98 q~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR  143 (201)
T KOG3201|consen   98 QQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR  143 (201)
T ss_pred             HHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence            1234589999999887543344678999999999999988776643

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.94  E-value=0.00012  Score=60.03  Aligned_cols=105  Identities=19%  Similarity=0.196  Sum_probs=71.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHH-----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003          176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD  250 (362)
                      .+..+|+|+|||.|+++..++.     . ++.+|+|+|.++..++.++++.+........+..+..++....+ .....+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCe
Confidence            5678999999999999999988     4 66799999999999999998877651111245666666654432 145577


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +++..|.-.-+.  ..+|+...+   |+-.+++..|.
T Consensus       102 ~~vgLHaCG~Ls--~~~l~~~~~---~~~~~l~~vpC  133 (141)
T PF13679_consen  102 ILVGLHACGDLS--DRALRLFIR---PNARFLVLVPC  133 (141)
T ss_pred             EEEEeecccchH--HHHHHHHHH---cCCCEEEEcCC
Confidence            888766544331  234444444   66666665554

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=97.94  E-value=3.7e-05  Score=72.90  Aligned_cols=73  Identities=26%  Similarity=0.410  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      +..++.+.++++..++ .|||+-||.|.++..+++...  +|+|+|.++.+++.|+++++.+   ...++.++.++.++
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N---~i~n~~f~~~~~~~  255 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN---GIDNVEFIRGDAED  255 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT---T--SEEEEE--SHH
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc---CCCcceEEEeeccc
Confidence            4556778888887655 899999999999999999876  9999999999999999999886   35789999887644

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.93  E-value=0.0001  Score=68.20  Aligned_cols=87  Identities=17%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .+|.++||+||++|.++..+.++|.  .|++||..+ |......         .+++....+|......+.+.+|.|+|-
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~-l~~~L~~---------~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGP-MAQSLMD---------TGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechh-cCHhhhC---------CCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            5689999999999999999999986  999999655 3222222         578999999876653236789999986


Q ss_pred             ccccCCCCHHHHHHHHHhhccCC
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPG  278 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~Lkpg  278 (362)
                      .+    ..|..+++-+.+.|..|
T Consensus       278 mv----e~P~rva~lm~~Wl~~g  296 (357)
T PRK11760        278 MV----EKPARVAELMAQWLVNG  296 (357)
T ss_pred             cc----cCHHHHHHHHHHHHhcC
Confidence            65    57889999999999776

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.92  E-value=6.7e-05  Score=68.94  Aligned_cols=116  Identities=25%  Similarity=0.269  Sum_probs=88.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-C
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F  244 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~  244 (362)
                      .....+.+.++.+|||+.++.|.-+..+++... .+.+++.|+++..+...++++++.   +..++.....|.... + .
T Consensus        76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~---g~~~v~~~~~D~~~~~~~~  152 (283)
T PF01189_consen   76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL---GVFNVIVINADARKLDPKK  152 (283)
T ss_dssp             HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT---T-SSEEEEESHHHHHHHHH
T ss_pred             cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc---CCceEEEEeeccccccccc
Confidence            344557788899999999999999888888754 579999999999999999988876   356788887887655 1 2


Q ss_pred             CCCcceEEEec------ccccCCCCH----------------HHHHHHHHhhc----cCCcEEEEEEE
Q 018003          245 ASSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTY  286 (362)
Q Consensus       245 ~~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~L----kpgG~li~~~~  286 (362)
                      ....||.|+.-      +++..-++.                .++|+.+.+.+    ||||+++.+|=
T Consensus       153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            23469999963      334433331                26799999999    99999998873

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.91  E-value=1.9e-05  Score=65.83  Aligned_cols=72  Identities=24%  Similarity=0.256  Sum_probs=53.7

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCc-ceEEEec
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSS-IDAVHAG  255 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~-fD~V~~~  255 (362)
                      .|+|+.||.|..+..+++.+.  +|+++|+++..++.|+.+++-.  +...++.++++|+.++.  +.... +|+|+++
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY--Gv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY--GVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT--T-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            699999999999999999976  9999999999999999998876  23568999999986642  22222 7999975

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.87  E-value=5.6e-05  Score=64.71  Aligned_cols=104  Identities=16%  Similarity=0.303  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~  253 (362)
                      .+|++||+||-|-|.....+.++.+ .+-+-+|..++.++..++.--..    ..++.+..+--++.  .++++.||-|.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e----k~nViil~g~WeDvl~~L~d~~FDGI~  174 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE----KENVIILEGRWEDVLNTLPDKHFDGIY  174 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc----ccceEEEecchHhhhccccccCcceeE
Confidence            5689999999999998888887765 46678999999988887753333    56777777754432  25688999999


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      --.--+|-.|...+.+.+.|+|||+|++-..
T Consensus       175 yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  175 YDTYSELYEDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence            7666588788889999999999999988653

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.86  E-value=0.00028  Score=61.24  Aligned_cols=107  Identities=14%  Similarity=0.260  Sum_probs=73.6

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS  248 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~  248 (362)
                      +...+|.+||-+|+++|.....+..- ++.+.|+++|.|+...+..-+-.++     ..|+--+.+|+....   .--+.
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-----R~NIiPIl~DAr~P~~Y~~lv~~  143 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-----RPNIIPILEDARHPEKYRMLVEM  143 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-----STTEEEEES-TTSGGGGTTTS--
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-----CCceeeeeccCCChHHhhccccc
Confidence            34567899999999999999998886 5677999999999654444333333     389999999997532   11347


Q ss_pred             ceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEc
Q 018003          249 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +|+|++.-. +  ++. .-++.++...||+||.++++.-.
T Consensus       144 VDvI~~DVa-Q--p~Qa~I~~~Na~~fLk~gG~~~i~iKa  180 (229)
T PF01269_consen  144 VDVIFQDVA-Q--PDQARIAALNARHFLKPGGHLIISIKA  180 (229)
T ss_dssp             EEEEEEE-S-S--TTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccEEEecCC-C--hHHHHHHHHHHHhhccCCcEEEEEEec
Confidence            999986433 1  233 45677888899999999988643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.83  E-value=0.00011  Score=67.49  Aligned_cols=97  Identities=13%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-  243 (362)
                      ..+.+.+.+.+.+++.++|.-+|.|..+..+++..+.+.|+|+|.++.+++.+++++...    ..++.++++++..+. 
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~----~~R~~~i~~nF~~l~~   83 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF----EGRVVLIHDNFANFFE   83 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc----CCcEEEEeCCHHHHHH
Confidence            356677778878889999999999999999998754589999999999999999988765    468999999987753 


Q ss_pred             ----CCCCcceEEEecccc--cCCCCHH
Q 018003          244 ----FASSSIDAVHAGAAI--HCWSSPS  265 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl--~h~~d~~  265 (362)
                          ....++|.|++.-.+  +++.++.
T Consensus        84 ~l~~~~~~~vDgIl~DLGvSS~Qld~~~  111 (305)
T TIGR00006        84 HLDELLVTKIDGILVDLGVSSPQLDDPE  111 (305)
T ss_pred             HHHhcCCCcccEEEEeccCCHhhcCCCC
Confidence                123569999976543  4444443

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.83  E-value=9.2e-05  Score=62.59  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=81.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+...-....+++|||+|+|+|.-+...++.|. ..|+..|+.+......+-+.+.+    ...+.+...|...   .+
T Consensus        69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~an----gv~i~~~~~d~~g---~~  140 (218)
T COG3897          69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAAN----GVSILFTHADLIG---SP  140 (218)
T ss_pred             HHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhc----cceeEEeeccccC---CC
Confidence            3444444445689999999999999999888874 57999999988777777776666    5678888888765   35


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcE-EEEEEEcc
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGV-FVGTTYIV  288 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~-li~~~~~~  288 (362)
                      ..||+|++..++..-+--.+++. ..+.|+..|. +++-+|.+
T Consensus       141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R  182 (218)
T COG3897         141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR  182 (218)
T ss_pred             cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence            67999999998765444456666 5555555555 44445443

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.78  E-value=0.00026  Score=62.62  Aligned_cols=153  Identities=11%  Similarity=0.104  Sum_probs=93.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +..++.+...++.  ..+|+|||||.-.++..+....++..++|+|++..+++...+.+...    ..+......|+..-
T Consensus        93 d~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----~~~~~~~v~Dl~~~  166 (251)
T PF07091_consen   93 DEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----GVPHDARVRDLLSD  166 (251)
T ss_dssp             HHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----T-CEEEEEE-TTTS
T ss_pred             HHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----CCCcceeEeeeecc
Confidence            3334444444333  67999999999999888777766779999999999999999988776    67888888898765


Q ss_pred             CCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                      + +....|+.+..-+++.+....  ..++-+..+=.|  .++++.|...-        ..-...           +.-.-
T Consensus       167 ~-~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~--~~vVSfPtrSL--------~gR~~g-----------m~~~y  224 (251)
T PF07091_consen  167 P-PKEPADLALLLKTLPCLERQRRGAGLELLDALRSP--HVVVSFPTRSL--------GGRNKG-----------MEQTY  224 (251)
T ss_dssp             H-TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCES--EEEEEEES---------------TT-----------HHHCH
T ss_pred             C-CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCC--eEEEecccccc--------ccCccc-----------cccCH
Confidence            4 456799999998887764322  222222222223  67777776531        110000           11112


Q ss_pred             HHHHHHHHHHCCCEEEEEEEecee
Q 018003          321 FDDLKRIFRQFQLVVNLKLFYGHI  344 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~~g~~  344 (362)
                      ...++.++..-|+. ++...+|.-
T Consensus       225 ~~~fe~~~~~~~~~-~~~~~~~~E  247 (251)
T PF07091_consen  225 SAWFEALAAERGWI-VDRLTFGNE  247 (251)
T ss_dssp             HHHHHHHCCTTCEE-EEEEEETTE
T ss_pred             HHHHHHhcccCCce-eeeeecccc
Confidence            34678888888887 455555543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.77  E-value=0.00032  Score=64.76  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=78.5

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH--Hhhc--CCCCCCCEEEEEecCCCC-CCCCCcceEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQE--SNFPKENFLLVRADISRL-PFASSSIDAV  252 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~--~~~~--~~~~~~~~~~~~~d~~~~-p~~~~~fD~V  252 (362)
                      ..++|-+|.|.|.-++.+.+.-...+++-+|++|+|++.+++.  +...  .....+++.++..|+.++ .-....||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            4689999999999999998864467999999999999999843  2221  023367899999998664 2234589999


Q ss_pred             EecccccCCCCHH----------HHHHHHHhhccCCcEEEEEE
Q 018003          253 HAGAAIHCWSSPS----------TGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       253 ~~~~vl~h~~d~~----------~~l~~i~r~LkpgG~li~~~  285 (362)
                      +..     ++||.          .+..-+++.|+++|.+++..
T Consensus       370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            853     35553          67888899999999998764

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.73  E-value=0.0015  Score=56.52  Aligned_cols=136  Identities=13%  Similarity=0.030  Sum_probs=96.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +..+.++++.  +.++.||||-.+++..++.+.++...+++.|+++..++.|.+++...  ...+++....+|....--.
T Consensus         7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--~l~~~i~vr~~dgl~~l~~   82 (226)
T COG2384           7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--NLSERIDVRLGDGLAVLEL   82 (226)
T ss_pred             HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc--CCcceEEEeccCCccccCc
Confidence            4566667665  55699999999999999999999889999999999999999999886  4567888888887432223


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +..+|+|+..++=..  -....|++-.+.|+.--++++. |+                               -...+++
T Consensus        83 ~d~~d~ivIAGMGG~--lI~~ILee~~~~l~~~~rlILQ-Pn-------------------------------~~~~~LR  128 (226)
T COG2384          83 EDEIDVIVIAGMGGT--LIREILEEGKEKLKGVERLILQ-PN-------------------------------IHTYELR  128 (226)
T ss_pred             cCCcCEEEEeCCcHH--HHHHHHHHhhhhhcCcceEEEC-CC-------------------------------CCHHHHH
Confidence            457999987664221  1234555555555533233321 11                               2345789


Q ss_pred             HHHHHCCCEEEEEE
Q 018003          326 RIFRQFQLVVNLKL  339 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~  339 (362)
                      ++|...+|....+.
T Consensus       129 ~~L~~~~~~I~~E~  142 (226)
T COG2384         129 EWLSANSYEIKAET  142 (226)
T ss_pred             HHHHhCCceeeeee
Confidence            99999999766543

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.72  E-value=0.00015  Score=59.39  Aligned_cols=59  Identities=24%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ++||+|||.|.++..+++.++..+++++|+++.+.+.++++++.+   ...++.++...+..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n---~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN---NLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc---CCCcEEEEEeeeeC
Confidence            489999999999999999988778999999999999999988765   13468888777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.64  E-value=0.00075  Score=61.20  Aligned_cols=107  Identities=15%  Similarity=0.165  Sum_probs=66.4

Q ss_pred             CCeEEEEcCccchHHHHH-HHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          178 GGNIIDASCGSGLFSRIF-AKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l-~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      +.+|+=||||.=.++..+ ++. +.+..++++|+++++++.+++.++.. .+...++.++.+|....+..-..||+|+..
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-LGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-ccccCCeEEEecchhccccccccCCEEEEh
Confidence            459999999985554444 433 55668999999999999999877722 122678999999998776555689999876


Q ss_pred             ccccCC-CCHHHHHHHHHhhccCCcEEEEEE
Q 018003          256 AAIHCW-SSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       256 ~vl~h~-~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ....-- .+..+++.++.+.++||..+++-.
T Consensus       200 alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  200 ALVGMDAEPKEEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             TT-S----SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred             hhcccccchHHHHHHHHHhhCCCCcEEEEec
Confidence            654322 266799999999999999988764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.64  E-value=0.0015  Score=57.22  Aligned_cols=142  Identities=15%  Similarity=0.166  Sum_probs=90.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE-EecCCCCC---CCCCcce
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP---FASSSID  250 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~p---~~~~~fD  250 (362)
                      ..++..+||+|+.||.|+..+.++|. ..|+++|..-..+..--+.        .+++... ..++..+.   +. +..|
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~--------d~rV~~~E~tN~r~l~~~~~~-~~~d  146 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRN--------DPRVIVLERTNVRYLTPEDFT-EKPD  146 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhc--------CCcEEEEecCChhhCCHHHcc-cCCC
Confidence            34688999999999999999999975 5899999988766654332        3455443 34555442   22 3678


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE-EccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHH
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT-YIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR  329 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~  329 (362)
                      ++++--++-   ....+|..+..+++|+|-++... |.++          .-+......--......+---...+.+++.
T Consensus       147 ~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~LvKPQFE----------agr~~v~kkGvv~d~~~~~~v~~~i~~~~~  213 (245)
T COG1189         147 LIVIDVSFI---SLKLILPALLLLLKDGGDLVLLVKPQFE----------AGREQVGKKGVVRDPKLHAEVLSKIENFAK  213 (245)
T ss_pred             eEEEEeehh---hHHHHHHHHHHhcCCCceEEEEecchhh----------hhhhhcCcCceecCcchHHHHHHHHHHHHh
Confidence            888866543   56788999999999999877543 3221          111111000000000122233557888999


Q ss_pred             HCCCEEEEEE
Q 018003          330 QFQLVVNLKL  339 (362)
Q Consensus       330 ~~Gf~~v~~~  339 (362)
                      ..||+.....
T Consensus       214 ~~g~~~~gl~  223 (245)
T COG1189         214 ELGFQVKGLI  223 (245)
T ss_pred             hcCcEEeeeE
Confidence            9999876554

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=97.60  E-value=3e-05  Score=55.02  Aligned_cols=47  Identities=30%  Similarity=0.565  Sum_probs=32.1

Q ss_pred             ccCCeeeCCCCCCCcccccC-------------------CCCccccccCCceecCccCcccccCCc
Q 018003           67 TSKNVLACPICYKPLTWIGD-------------------SSLSIESAAGSSLQCNTCKKTYSGVGT  113 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~-------------------~~~~~~~~~~~~l~C~~C~~~~~~~~g  113 (362)
                      ..+++|+||.|+++|.....                   ...-...+.++.+.|++|++.|++.+|
T Consensus         3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            46789999999998811100                   000013567799999999999999776

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.53  E-value=0.00018  Score=60.38  Aligned_cols=97  Identities=18%  Similarity=0.207  Sum_probs=74.6

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI  258 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl  258 (362)
                      ..+.|+|+|+|.++...++...  +|++++.++...+.|.+++.-.   +..+++++.+|+....|  ...|+|+|-..=
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~---g~~n~evv~gDA~~y~f--e~ADvvicEmlD  106 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVP---GDVNWEVVVGDARDYDF--ENADVVICEMLD  106 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCC---CCcceEEEecccccccc--cccceeHHHHhh
Confidence            5899999999999988887754  9999999999999999986433   35789999999998887  457999874321


Q ss_pred             cCC--CCHHHHHHHHHhhccCCcEEE
Q 018003          259 HCW--SSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       259 ~h~--~d~~~~l~~i~r~LkpgG~li  282 (362)
                      -.+  .....++..+...||-++.++
T Consensus       107 TaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         107 TALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HHhhcccccHHHHHHHHHhhcCCccc
Confidence            111  122356777788888888876

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.51  E-value=0.001  Score=55.86  Aligned_cols=100  Identities=16%  Similarity=0.249  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCCC--------CCC
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRL--------PFA  245 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~--------p~~  245 (362)
                      .|+.+|||+||..|.++....++ +|.+-|.|+|+-.-              .+...+.++++ |+.+.        .++
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~--------------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp  133 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI--------------EPPEGATIIQGNDVTDPETYRKIFEALP  133 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec--------------cCCCCcccccccccCCHHHHHHHHHhCC
Confidence            46899999999999999988887 58889999998431              12455666666 66542        145


Q ss_pred             CCcceEEEecccccC----CCCHH-------HHHHHHHhhccCCcEEEEEEEccC
Q 018003          246 SSSIDAVHAGAAIHC----WSSPS-------TGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h----~~d~~-------~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +...|+|++-..=.-    +.|-.       .++.-....++|+|.+++-.+..+
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            678999997543111    11111       234444567889999999988764

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.51  E-value=0.00013  Score=70.32  Aligned_cols=76  Identities=13%  Similarity=0.222  Sum_probs=64.5

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ..+.....+.++++...+..+||+-||||.++..+++.-.  .|+|+|+++++++.|+++++.+   +..|.+|+++-++
T Consensus       367 ~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N---gisNa~Fi~gqaE  441 (534)
T KOG2187|consen  367 AAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN---GISNATFIVGQAE  441 (534)
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc---Cccceeeeecchh
Confidence            3455567788888888889999999999999999988755  9999999999999999988776   4789999999555


Q ss_pred             C
Q 018003          241 R  241 (362)
Q Consensus       241 ~  241 (362)
                      +
T Consensus       442 ~  442 (534)
T KOG2187|consen  442 D  442 (534)
T ss_pred             h
Confidence            4

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.48  E-value=0.0063  Score=51.97  Aligned_cols=105  Identities=12%  Similarity=0.158  Sum_probs=76.8

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcc
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSI  249 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~f  249 (362)
                      +...+|.+||-+|+.+|.....+..--..+.++++|.|+.+....-..+++.     .|+.-+.+|+....   .--+..
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-----~Ni~PIL~DA~~P~~Y~~~Ve~V  146 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-----PNIIPILEDARKPEKYRHLVEKV  146 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-----CCceeeecccCCcHHhhhhcccc
Confidence            3456799999999999999999888755678999999997666555444443     78889999986532   123458


Q ss_pred             eEEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEEc
Q 018003          250 DAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |+|+.-     +..|.   -+..++...||+||.++++.-.
T Consensus       147 Dviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKA  182 (231)
T COG1889         147 DVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKA  182 (231)
T ss_pred             cEEEEe-----cCCchHHHHHHHHHHHhcccCCeEEEEEEe
Confidence            888753     23333   4678889999999977776543

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=97.40  E-value=0.0003  Score=57.63  Aligned_cols=135  Identities=13%  Similarity=0.175  Sum_probs=82.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHH-HHHHHhhcCCCCCCCEEEEEecCC-CCCCCCCcceEEEec
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-CYEFVQQESNFPKENFLLVRADIS-RLPFASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~d~~-~~p~~~~~fD~V~~~  255 (362)
                      +++.+-+|...-+.-....+.|. .++.-+|.++--++. .+.++          ..+...|+. ...-..++||.+.+.
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA-~~iltveyn~L~i~~~~~dr~----------ssi~p~df~~~~~~y~~~fD~~as~   70 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGA-AKILTVEYNKLEIQEEFRDRL----------SSILPVDFAKNWQKYAGSFDFAASF   70 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCC-ceEEEEeecccccCccccccc----------ccccHHHHHHHHHHhhccchhhhee
Confidence            56788888886665555555553 578888876522111 11110          011112221 111235789999999


Q ss_pred             ccccCCC-----CH------HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          256 AAIHCWS-----SP------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       256 ~vl~h~~-----d~------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      .++||+.     ||      ...+.++.++|||||.|++..|......                 .++  ..+.|....+
T Consensus        71 ~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i-----------------~fN--ahRiYg~~rL  131 (177)
T PF03269_consen   71 SSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI-----------------QFN--AHRIYGPIRL  131 (177)
T ss_pred             chhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce-----------------EEe--cceeecHhHH
Confidence            9999982     33      2678899999999999999999864211                 111  2355666666


Q ss_pred             HHHHHHCCCEEEEEEEecee
Q 018003          325 KRIFRQFQLVVNLKLFYGHI  344 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g~~  344 (362)
                      ..++  .||+.+....+..-
T Consensus       132 ~mm~--~gfe~i~tfs~~~e  149 (177)
T PF03269_consen  132 AMMF--YGFEWIDTFSGDSE  149 (177)
T ss_pred             HHHh--CCcEEEeeeccCcC
Confidence            6665  68888776555443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.28  E-value=7.5e-05  Score=57.92  Aligned_cols=100  Identities=16%  Similarity=0.198  Sum_probs=42.4

Q ss_pred             EEEcCccchHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEecc
Q 018003          182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA  256 (362)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~~~  256 (362)
                      ||+|+..|..+..+++....   .+++++|+.+. .+.+++.+++.  ....++.++.++..+.  .++.+++|+|+.-.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~--~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA--GLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------G--GG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc--CCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            68999999988777765322   37999999994 22222222211  1246799999998543  13357899999765


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      . |..+.....++.+.+.|+|||++++-+
T Consensus        78 ~-H~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   78 D-HSYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             ----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             C-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            2 212234567888999999999998753

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.20  E-value=0.0021  Score=60.61  Aligned_cols=112  Identities=23%  Similarity=0.237  Sum_probs=82.8

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS  248 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~  248 (362)
                      +.+++|.+|||+.+..|.=+.+++.... .+.+++.|.+...+...+.++.+.   +..+......|...+|   ++. +
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl---Gv~ntiv~n~D~~ef~~~~~~~-~  312 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL---GVTNTIVSNYDGREFPEKEFPG-S  312 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh---CCCceEEEccCcccccccccCc-c
Confidence            4678999999999999887666665422 358999999999999999988887   3567777788887665   444 8


Q ss_pred             ceEEEec----c--cccCC------C---C-------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          249 IDAVHAG----A--AIHCW------S---S-------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       249 fD~V~~~----~--vl~h~------~---d-------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ||-|+.-    .  ++.--      .   |       ..++|.....++++||+|+.+|=..
T Consensus       313 fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  313 FDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             cceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            9999843    3  22110      0   0       1367888889999999999887543

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.17  E-value=0.0022  Score=51.93  Aligned_cols=82  Identities=18%  Similarity=0.280  Sum_probs=57.3

Q ss_pred             EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEecccccCCC--------CHH---HHHH
Q 018003          203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWS--------SPS---TGVA  269 (362)
Q Consensus       203 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~~vl~h~~--------d~~---~~l~  269 (362)
                      +|+|+|+-+++++..++++++.  +...++.++..+=+.+.  .+.+++|+++.+..  ++|        .+.   .+++
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~--~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~   76 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEA--GLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALE   76 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHT--T-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhc--CCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHH
Confidence            5899999999999999999886  33457999988766654  23358999987643  333        232   6789


Q ss_pred             HHHhhccCCcEEEEEEEcc
Q 018003          270 EISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       270 ~i~r~LkpgG~li~~~~~~  288 (362)
                      .+.++|+|||++.+..+..
T Consensus        77 ~al~lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   77 AALELLKPGGIITIVVYPG   95 (140)
T ss_dssp             HHHHHEEEEEEEEEEE--S
T ss_pred             HHHHhhccCCEEEEEEeCC
Confidence            9999999999999988754

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.11  E-value=0.00057  Score=58.89  Aligned_cols=91  Identities=22%  Similarity=0.234  Sum_probs=68.7

Q ss_pred             CcHHHHHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003          161 GPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  239 (362)
                      +++.....++...... ....|+|.-||.|..+..++..++  .|+++|+++.-+.-|+++++-. |. ..++.|++||+
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiY-GI-~~rItFI~GD~  152 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVY-GV-PDRITFICGDF  152 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceee-cC-CceeEEEechH
Confidence            4555555655554322 356899999999999999999988  9999999999999999988776 33 45999999998


Q ss_pred             CCC----CCCCCcceEEEec
Q 018003          240 SRL----PFASSSIDAVHAG  255 (362)
Q Consensus       240 ~~~----p~~~~~fD~V~~~  255 (362)
                      .++    .+....+|+|..+
T Consensus       153 ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen  153 LDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             HHHHHHHhhhhheeeeeecC
Confidence            653    3444456677755

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.08  E-value=0.0072  Score=59.94  Aligned_cols=130  Identities=20%  Similarity=0.148  Sum_probs=94.1

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC---C-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCE
Q 018003          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---L-FSLVVALDYSENMLKQCYEFVQQESNFPKENF  232 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~  232 (362)
                      +.+++|....+.+.+.+.+.+..+|+|-.||+|.++....+..   . ...++|.|+++.....|+.++--+ +... ++
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh-gi~~-~~  243 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH-GIEG-DA  243 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh-CCCc-cc
Confidence            6788999999999999998778899999999999876665542   1 257999999999999999987665 1112 44


Q ss_pred             EEEEecCCCCCC-----CCCcceEEEeccccc---CCC---------------------CH-HHHHHHHHhhccCCcEEE
Q 018003          233 LLVRADISRLPF-----ASSSIDAVHAGAAIH---CWS---------------------SP-STGVAEISRVLRPGGVFV  282 (362)
Q Consensus       233 ~~~~~d~~~~p~-----~~~~fD~V~~~~vl~---h~~---------------------d~-~~~l~~i~r~LkpgG~li  282 (362)
                      ....+|-..-|.     ..+.||.|+++--..   +..                     .. ..+++++...|+|||+..
T Consensus       244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aa  323 (489)
T COG0286         244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAA  323 (489)
T ss_pred             cccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEE
Confidence            566666544442     236799998873321   110                     01 478999999999999777


Q ss_pred             EEEEcc
Q 018003          283 GTTYIV  288 (362)
Q Consensus       283 ~~~~~~  288 (362)
                      +..|..
T Consensus       324 ivl~~g  329 (489)
T COG0286         324 IVLPDG  329 (489)
T ss_pred             EEecCC
Confidence            766653

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.98  E-value=0.029  Score=53.44  Aligned_cols=159  Identities=13%  Similarity=0.082  Sum_probs=86.9

Q ss_pred             CCeEEEEcCccchHHHHHHHh---------------CCCCEEEEEeCCHHHHHHHHHHHhhcC-------C---CCCCC-
Q 018003          178 GGNIIDASCGSGLFSRIFAKS---------------GLFSLVVALDYSENMLKQCYEFVQQES-------N---FPKEN-  231 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~---------------~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~---~~~~~-  231 (362)
                      ..+|+|+|||+|.++..+...               .|..+|+.-|+-.+-....-+.+....       .   ....+ 
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            568999999999876544321               134577777765432221111111000       0   00011 


Q ss_pred             --EEEEEecCCCCCCCCCcceEEEecccccCCCC-H-------------------------------------HHHHHHH
Q 018003          232 --FLLVRADISRLPFASSSIDAVHAGAAIHCWSS-P-------------------------------------STGVAEI  271 (362)
Q Consensus       232 --~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d-~-------------------------------------~~~l~~i  271 (362)
                        +.-+.+.+..--||.++.+++++..+||++.. |                                     ..+|+.=
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R  223 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR  223 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence              11222344444578999999999999999852 1                                     1234444


Q ss_pred             HhhccCCcEEEEEEEccCCCCcch-----h-h---hHH-HHHhhhhc------ccccccccccCCHHHHHHHHHHCCCEE
Q 018003          272 SRVLRPGGVFVGTTYIVDGPFNLI-----P-F---SRL-LRQVCFLD------LKIVGFSIPVLGFDDLKRIFRQFQLVV  335 (362)
Q Consensus       272 ~r~LkpgG~li~~~~~~~~~~~~~-----~-~---~~~-~~~~~~~~------~~~~~~~~~~~s~~~l~~ll~~~Gf~~  335 (362)
                      ++-|.|||++++....+.......     . |   +.. +.+.....      ........++.+.++++..+++.|.-.
T Consensus       224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~  303 (386)
T PLN02668        224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA  303 (386)
T ss_pred             HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence            567899999999988774321110     0 1   110 11111000      011111467789999999999998743


Q ss_pred             E
Q 018003          336 N  336 (362)
Q Consensus       336 v  336 (362)
                      +
T Consensus       304 I  304 (386)
T PLN02668        304 I  304 (386)
T ss_pred             e
Confidence            3

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.94  E-value=0.0019  Score=59.45  Aligned_cols=86  Identities=17%  Similarity=0.319  Sum_probs=63.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      +..+.+.+.+.+++.++|.--|.|..+..+.+..+++.++|+|-++.+++.|++++...    ..++.++.+++.++.  
T Consensus         9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F~~l~~~   84 (310)
T PF01795_consen    9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNFSNLDEY   84 (310)
T ss_dssp             HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-GGGHHHH
T ss_pred             HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccHHHHHHH
Confidence            35667777788899999999999999999999877789999999999999999887655    678999999987753  


Q ss_pred             ---C-CCCcceEEEec
Q 018003          244 ---F-ASSSIDAVHAG  255 (362)
Q Consensus       244 ---~-~~~~fD~V~~~  255 (362)
                         . .-..+|.|++-
T Consensus        85 l~~~~~~~~~dgiL~D  100 (310)
T PF01795_consen   85 LKELNGINKVDGILFD  100 (310)
T ss_dssp             HHHTTTTS-EEEEEEE
T ss_pred             HHHccCCCccCEEEEc
Confidence               2 33578888864

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.92  E-value=0.0016  Score=63.00  Aligned_cols=96  Identities=20%  Similarity=0.254  Sum_probs=64.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH----HHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE----NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~----~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V  252 (362)
                      .-..|+|+.+|.|.|+.+|.+..    |+.+..-+    +.+....++         .-+-..+.=-+.++..+.+||+|
T Consensus       365 ~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydR---------GLIG~yhDWCE~fsTYPRTYDLl  431 (506)
T PF03141_consen  365 RIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDR---------GLIGVYHDWCEAFSTYPRTYDLL  431 (506)
T ss_pred             ceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhc---------ccchhccchhhccCCCCcchhhe
Confidence            34689999999999999997753    33333222    223332222         00111111124456667899999


Q ss_pred             EecccccCCCC---HHHHHHHHHhhccCCcEEEEEE
Q 018003          253 HAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       253 ~~~~vl~h~~d---~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ++.+++.+..+   ...+|-|+-|+|+|||.+++.+
T Consensus       432 HA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD  467 (506)
T PF03141_consen  432 HADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD  467 (506)
T ss_pred             ehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence            99999877754   4688999999999999999864

; GO: 0008168 methyltransferase activity

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.90  E-value=0.0054  Score=56.29  Aligned_cols=97  Identities=11%  Similarity=0.029  Sum_probs=53.3

Q ss_pred             HHHHHHHhhcCCCC-----CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          164 KEFELMKGYLKPVL-----GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       164 ~~~~~l~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      ..+..+.+.+....     ..++||||+|....=..|..+..+.+++|+|+++..++.|++.++.+ .....+|.++...
T Consensus        84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N-~~L~~~I~l~~~~  162 (299)
T PF05971_consen   84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN-PNLESRIELRKQK  162 (299)
T ss_dssp             HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT--T-TTTEEEEE--
T ss_pred             HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc-cccccceEEEEcC
Confidence            34555666554322     35799999998755333333222349999999999999999999876 2446788887653


Q ss_pred             CCC-----CCCCCCcceEEEecccccCC
Q 018003          239 ISR-----LPFASSSIDAVHAGAAIHCW  261 (362)
Q Consensus       239 ~~~-----~p~~~~~fD~V~~~~vl~h~  261 (362)
                      -..     +....+.||+.+|+--++.-
T Consensus       163 ~~~~i~~~i~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  163 NPDNIFDGIIQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             ST-SSTTTSTT--S-EEEEEE-----SS
T ss_pred             CccccchhhhcccceeeEEecCCccccC
Confidence            222     22234689999998776643

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.78  E-value=0.0044  Score=50.07  Aligned_cols=119  Identities=14%  Similarity=0.130  Sum_probs=80.7

Q ss_pred             CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (362)
Q Consensus       158 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (362)
                      ..+...+.++.++.++...+.++.+|+|.|.|+...+.++.+. -..+|+|+++-.+.+++-+.-+.  +......|..-
T Consensus        53 YVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~--g~~k~trf~Rk  129 (199)
T KOG4058|consen   53 YVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRA--GCAKSTRFRRK  129 (199)
T ss_pred             ccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHH--hcccchhhhhh
Confidence            3444566677788888877778999999999999999888872 37899999999988887665443  34567888888


Q ss_pred             cCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       238 d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      |+.+..+.+-.  .|+.+.+=.-++|..   .++..-|..+..++..
T Consensus       130 dlwK~dl~dy~--~vviFgaes~m~dLe---~KL~~E~p~nt~vvac  171 (199)
T KOG4058|consen  130 DLWKVDLRDYR--NVVIFGAESVMPDLE---DKLRTELPANTRVVAC  171 (199)
T ss_pred             hhhhccccccc--eEEEeehHHHHhhhH---HHHHhhCcCCCeEEEE
Confidence            88877665543  344333322223333   2334445556666544

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.76  E-value=0.074  Score=48.26  Aligned_cols=166  Identities=9%  Similarity=-0.046  Sum_probs=96.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C----
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L----  242 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~----  242 (362)
                      .+.+.+... ...|+.+|||--.-...+.. ..+..++=+|. ++.++.-++.+.+.......+..++.+|+.. +    
T Consensus        73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L  149 (260)
T TIGR00027        73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL  149 (260)
T ss_pred             HHHHHHhcC-CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence            444444432 34699999998665555432 22345555554 4456655666665311235688899999862 1    


Q ss_pred             ---CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccc
Q 018003          243 ---PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIP  317 (362)
Q Consensus       243 ---p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (362)
                         .+..+..-++++-.++.+++..  ..+++.+.+...||+.+++.....-................. .....+ -..
T Consensus       150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~  227 (260)
T TIGR00027       150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAAR-GVDGSG-LVF  227 (260)
T ss_pred             HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhh-cccccc-ccc
Confidence               1222334478888888888654  478999998888999988875543110000011111111110 012222 334


Q ss_pred             cCCHHHHHHHHHHCCCEEEEE
Q 018003          318 VLGFDDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       318 ~~s~~~l~~ll~~~Gf~~v~~  338 (362)
                      .+++.++..+|++.||+....
T Consensus       228 ~~~~~~~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       228 GIDRADVAEWLAERGWRASEH  248 (260)
T ss_pred             CCChhhHHHHHHHCCCeeecC
Confidence            578999999999999988654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.69  E-value=0.006  Score=56.27  Aligned_cols=119  Identities=14%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC--CCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPF  244 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~p~  244 (362)
                      .+......-..++|||+|.|.|.-+.++..-.|+ ..++-++.|+..-+.........   ......+-..|+.  .+++
T Consensus       104 ~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv---~t~~td~r~s~vt~dRl~l  180 (484)
T COG5459         104 ELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV---STEKTDWRASDVTEDRLSL  180 (484)
T ss_pred             HHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc---ccccCCCCCCccchhccCC
Confidence            3333444445678999999999988777766654 35778888886555554432221   1222222223331  2333


Q ss_pred             C-CCcceEEEecccccCCCCH---HHHHHHHHhhccCCcEEEEEEEccC
Q 018003          245 A-SSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       245 ~-~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      + ...|++|+..+-|-|...+   ...++.+..++.|||.|+|.++...
T Consensus       181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            2 3456666665555444333   3578999999999999999987653

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.68  E-value=0.13  Score=45.45  Aligned_cols=98  Identities=18%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCC-CCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~-~~~~fD~V~~  254 (362)
                      .|++||=+|=.. ..+.+++..+...+++.+|+++..+++.++..++.    .-+++.+..|+.. +|- -.++||+++.
T Consensus        44 ~gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----gl~i~~~~~DlR~~LP~~~~~~fD~f~T  118 (243)
T PF01861_consen   44 EGKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEE----GLPIEAVHYDLRDPLPEELRGKFDVFFT  118 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----T--EEEE---TTS---TTTSS-BSEEEE
T ss_pred             cCCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----CCceEEEEecccccCCHHHhcCCCEEEe
Confidence            578999999443 33444444555679999999999999999988887    4569999999955 342 2478999996


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCcE
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPGGV  280 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~LkpgG~  280 (362)
                      .-. +-..-...++......||..|.
T Consensus       119 DPP-yT~~G~~LFlsRgi~~Lk~~g~  143 (243)
T PF01861_consen  119 DPP-YTPEGLKLFLSRGIEALKGEGC  143 (243)
T ss_dssp             ----SSHHHHHHHHHHHHHTB-STT-
T ss_pred             CCC-CCHHHHHHHHHHHHHHhCCCCc
Confidence            321 1011113678888889987773

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK10742 putative methyltransferase; Provisional

Probab=96.66  E-value=0.013  Score=52.18  Aligned_cols=92  Identities=14%  Similarity=0.041  Sum_probs=68.2

Q ss_pred             HHHHhhcCCCCCC--eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-----CC-CCCCEEEEEec
Q 018003          167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NF-PKENFLLVRAD  238 (362)
Q Consensus       167 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~-~~~~~~~~~~d  238 (362)
                      +.+.+.++..++.  +|||.=+|.|..+..++.+|.  +|+++|-++......++.++...     +. ...++.++.+|
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~d  153 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHAS  153 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCc
Confidence            4667777766666  899999999999999999875  89999999998888888776620     00 01468888888


Q ss_pred             CCCC-CCCCCcceEEEecccccC
Q 018003          239 ISRL-PFASSSIDAVHAGAAIHC  260 (362)
Q Consensus       239 ~~~~-p~~~~~fD~V~~~~vl~h  260 (362)
                      ...+ .-...+||+|++--.+.|
T Consensus       154 a~~~L~~~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        154 SLTALTDITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHHHhhCCCCCcEEEECCCCCC
Confidence            7543 212337999998766555

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.60  E-value=0.033  Score=48.13  Aligned_cols=119  Identities=21%  Similarity=0.238  Sum_probs=69.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcC------------------
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES------------------  225 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~------------------  225 (362)
                      +++-..++....+-++.|-.||.|+++-.+.-..  .-..|+|.|+++++++.|++++.-..                  
T Consensus        40 ~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~  119 (246)
T PF11599_consen   40 FQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQY  119 (246)
T ss_dssp             HHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHc
Confidence            3444455555556789999999999877665432  22479999999999999999873221                  


Q ss_pred             ---------------------CCCCCCEEEEEecCCCCC-----CCCCcceEEEecccc---cCCCC-----H-HHHHHH
Q 018003          226 ---------------------NFPKENFLLVRADISRLP-----FASSSIDAVHAGAAI---HCWSS-----P-STGVAE  270 (362)
Q Consensus       226 ---------------------~~~~~~~~~~~~d~~~~p-----~~~~~fD~V~~~~vl---~h~~d-----~-~~~l~~  270 (362)
                                           .+......+.++|+.+..     -.....|+|+.----   -+|..     | ..+|..
T Consensus       120 ~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~  199 (246)
T PF11599_consen  120 GKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNS  199 (246)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHH
Confidence                                 223445778888987721     112346999875332   23322     2 378999


Q ss_pred             HHhhccCCcEEEEE
Q 018003          271 ISRVLRPGGVFVGT  284 (362)
Q Consensus       271 i~r~LkpgG~li~~  284 (362)
                      ++.+|-+++++.++
T Consensus       200 l~~vLp~~sVV~v~  213 (246)
T PF11599_consen  200 LAPVLPERSVVAVS  213 (246)
T ss_dssp             HHCCS-TT-EEEEE
T ss_pred             HHhhCCCCcEEEEe
Confidence            99999555555553

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.58  E-value=0.14  Score=48.36  Aligned_cols=157  Identities=19%  Similarity=0.101  Sum_probs=78.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHh------------C----CCCEEEEEeCCHHHHHHHHHHHhhcC--CCCCCCE--EEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKS------------G----LFSLVVALDYSENMLKQCYEFVQQES--NFPKENF--LLVR  236 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~------------~----~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~--~~~~  236 (362)
                      ..-+|+|+||..|.++..+...            +    +..+|+--|+-.+--...-+.+....  -....++  .-+.
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            4568999999999988766542            1    12478888864431111111111100  0001232  3344


Q ss_pred             ecCCCCCCCCCcceEEEecccccCCCC-H-----------------------H---------------HHHHHHHhhccC
Q 018003          237 ADISRLPFASSSIDAVHAGAAIHCWSS-P-----------------------S---------------TGVAEISRVLRP  277 (362)
Q Consensus       237 ~d~~~~p~~~~~fD~V~~~~vl~h~~d-~-----------------------~---------------~~l~~i~r~Lkp  277 (362)
                      +.+..--+|+++.|++++..+|||+.. |                       .               .+|+.=++-|+|
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  175 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP  175 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence            666665688999999999999999842 1                       1               234444567899


Q ss_pred             CcEEEEEEEccCCCCcc----hhhhHHHHHhhh----hc------ccccccccccCCHHHHHHHHHHCCC
Q 018003          278 GGVFVGTTYIVDGPFNL----IPFSRLLRQVCF----LD------LKIVGFSIPVLGFDDLKRIFRQFQL  333 (362)
Q Consensus       278 gG~li~~~~~~~~~~~~----~~~~~~~~~~~~----~~------~~~~~~~~~~~s~~~l~~ll~~~Gf  333 (362)
                      ||++++..+..+.....    ......+...+.    ..      ........++.+.++++..+++.|-
T Consensus       176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs  245 (334)
T PF03492_consen  176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS  245 (334)
T ss_dssp             EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred             CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence            99999999887652111    111111111111    00      0111114677899999999998885

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.56  E-value=0.019  Score=52.25  Aligned_cols=88  Identities=17%  Similarity=0.237  Sum_probs=71.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ..+....+.+.+.+++..+|.--|.|..+..+.+..+ .++++|+|-++.+++.|++++...    ..++.++++.+..+
T Consensus        10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~----~~r~~~v~~~F~~l   85 (314)
T COG0275          10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF----DGRVTLVHGNFANL   85 (314)
T ss_pred             hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc----CCcEEEEeCcHHHH
Confidence            3456777888888899999999999999999999865 356999999999999999998776    57899999988765


Q ss_pred             C-----CCCCcceEEEec
Q 018003          243 P-----FASSSIDAVHAG  255 (362)
Q Consensus       243 p-----~~~~~fD~V~~~  255 (362)
                      .     ..-+.+|-|+.-
T Consensus        86 ~~~l~~~~i~~vDGiL~D  103 (314)
T COG0275          86 AEALKELGIGKVDGILLD  103 (314)
T ss_pred             HHHHHhcCCCceeEEEEe
Confidence            3     223467777754

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.55  E-value=0.0068  Score=52.44  Aligned_cols=105  Identities=12%  Similarity=0.084  Sum_probs=55.4

Q ss_pred             CCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----C----C
Q 018003          178 GGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----F----A  245 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~----~  245 (362)
                      +..|+|+|.-.|.-+..++.    .+..++|+|+|++.......  ..+.+  ...+++++++||..+..    .    .
T Consensus        33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~h--p~~~rI~~i~Gds~d~~~~~~v~~~~~  108 (206)
T PF04989_consen   33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESH--PMSPRITFIQGDSIDPEIVDQVRELAS  108 (206)
T ss_dssp             -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG------TTEEEEES-SSSTHHHHTSGSS--
T ss_pred             CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhc--cccCceEEEECCCCCHHHHHHHHHhhc
Confidence            36999999999877665543    24667999999965432211  11111  11379999999987542    1    1


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .....+|+ -.+-|.-.+..+.|+....++++|+++++.+..
T Consensus       109 ~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen  109 PPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             --SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             cCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEecc
Confidence            12333444 333344456678899999999999999987543

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=96.54  E-value=0.0015  Score=40.14  Aligned_cols=36  Identities=25%  Similarity=0.693  Sum_probs=25.4

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      +...||.|+..+.+.++. +.   ...+.++|+.|++.|.
T Consensus         1 M~i~CP~C~~~f~v~~~~-l~---~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    1 MIITCPNCQTRFRVPDDK-LP---AGGRKVRCPKCGHVFR   36 (37)
T ss_pred             CEEECCCCCceEEcCHHH-cc---cCCcEEECCCCCcEee
Confidence            457899999987765421 11   2246899999999874

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.52  E-value=0.031  Score=52.19  Aligned_cols=114  Identities=20%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---  244 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---  244 (362)
                      .++..|+.+|||+.+..|.=+..+.+...    .+.+++=|.+...+......+...   ...++.+...|+...|-   
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l---~~~~~~v~~~~~~~~p~~~~  226 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL---PSPNLLVTNHDASLFPNIYL  226 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc---CCcceeeecccceecccccc
Confidence            35667899999999999998877777643    237999999998888887777443   34555566556554441   


Q ss_pred             ------CCCcceEEEec------ccccCCCCH-----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          245 ------ASSSIDAVHAG------AAIHCWSSP-----------------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 ------~~~~fD~V~~~------~vl~h~~d~-----------------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                            ....||-|++-      .++.+-++.                 ..+|..-.++||+||.++.+|=..
T Consensus       227 ~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  227 KDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             ccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence                  22368888853      223332221                 156888899999999999987543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.48  E-value=0.00082  Score=51.67  Aligned_cols=84  Identities=17%  Similarity=0.114  Sum_probs=43.7

Q ss_pred             cceEEEecccccCC--C--C--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          248 SIDAVHAGAAIHCW--S--S--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       248 ~fD~V~~~~vl~h~--~--d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      .||+|+|..|.-++  .  |  ...+++.+.+.|+|||.|++.-..+.++.........+.....        ... +.+
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~--------~i~-lrP   71 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYK--------SIK-LRP   71 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHH--------H-----G
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHh--------ceE-ECh
Confidence            48999998885433  1  2  2478999999999999999876544322111111122222221        222 455


Q ss_pred             HHHHHHHHH--CCCEEEEEEE
Q 018003          322 DDLKRIFRQ--FQLVVNLKLF  340 (362)
Q Consensus       322 ~~l~~ll~~--~Gf~~v~~~~  340 (362)
                      +.+.+.|..  .||..++...
T Consensus        72 ~~F~~~L~~~evGF~~~e~~~   92 (110)
T PF06859_consen   72 DQFEDYLLEPEVGFSSVEELG   92 (110)
T ss_dssp             GGHHHHHTSTTT---EEEEE-
T ss_pred             HHHHHHHHhcccceEEEEEcc
Confidence            678887777  6998776443

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.33  E-value=0.035  Score=49.53  Aligned_cols=112  Identities=14%  Similarity=0.032  Sum_probs=70.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHH--HHHHHHhhcCCCCCCCEEEEEe---cCCCCCCCCCc-ce
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK--QCYEFVQQESNFPKENFLLVRA---DISRLPFASSS-ID  250 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~--~a~~~~~~~~~~~~~~~~~~~~---d~~~~p~~~~~-fD  250 (362)
                      ...+|||+|+|+|..+..++... ..+|+..|+......  ..++.-....+.....+.....   +.....+..+. ||
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            35689999999997776666643 348888887653322  2211111100000112222221   11111122233 99


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +|++..++.+-..+..++..++.+|..+|.+++.++.++
T Consensus       165 lilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  165 LILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            999999999998999999999999999998888877654

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.17  E-value=0.24  Score=46.47  Aligned_cols=167  Identities=14%  Similarity=0.084  Sum_probs=90.8

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHhhcC----------CCCCCCEEEE
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQES----------NFPKENFLLV  235 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~----------~~~~~~~~~~  235 (362)
                      .......++|+|.|+|.+...+.+..        ...++.-+|+|++..+.-++.++...          ..+..-.-++
T Consensus        74 g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~~~~~~~~~~e~~p~~~~~i~  153 (370)
T COG1565          74 GRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATEDLIRWVEWVEDLPKKFPGIV  153 (370)
T ss_pred             cCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccccchhHHHHHHhccccCceEE
Confidence            33345689999999999988776642        25689999999998888887776541          0000001111


Q ss_pred             Eec--CCCCCCC------CCcceEEE----------e---------------------cccccCCCCHHHHHHHHHhhcc
Q 018003          236 RAD--ISRLPFA------SSSIDAVH----------A---------------------GAAIHCWSSPSTGVAEISRVLR  276 (362)
Q Consensus       236 ~~d--~~~~p~~------~~~fD~V~----------~---------------------~~vl~h~~d~~~~l~~i~r~Lk  276 (362)
                      .++  +..+|..      ..-++-++          +                     ..++|-.+....+++.+...|+
T Consensus       154 ~~NElfDAlPv~q~~~~~~~~~Er~~~~~~~~~~~~~~~~~~~~~~~ll~l~~~~~~~g~~~E~~~a~~~~l~~ia~~L~  233 (370)
T COG1565         154 VSNELFDALPVEQFIRTKGLFVERVVVLDAEGRLVFSHAINELIDEALLPLDAPEAEDGYILEVSPAREALLKAIAERLE  233 (370)
T ss_pred             EechhhccccceeEeccCceEEEEeeccCcccceeeccccccchhhhccCcccccccCCceeeeCHHHHHHHHHHHHHHh
Confidence            111  1112210      00011111          0                     0111211223378999999999


Q ss_pred             CCcEEEEEEEccCCCCc------chhhhHHHHHhhhhccc-cccc--ccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          277 PGGVFVGTTYIVDGPFN------LIPFSRLLRQVCFLDLK-IVGF--SIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       277 pgG~li~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~--~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      - |.+++.++..+....      ....+...+...+.+.- ..+.  -..+.+-..++.+.+++|++...-.+.
T Consensus       234 ~-G~~l~iDYG~~~~~~~~~~r~~g~~~~~~~~h~~~~~~~~~G~aDLTahVdFt~L~~~~~~~g~~~~~~~tQ  306 (370)
T COG1565         234 R-GVFLFIDYGYPAEEYYHPRRAYGTTLQAYRHHVHDDPLANPGLADLTAHVDFTALAKAAKAAGLEVLGFKTQ  306 (370)
T ss_pred             h-CeEEEEecCCcccccccccccCccHHHHHHhhccCChhhccCccceeeeecHHHHHHHHHHcCCcccchhhH
Confidence            8 888888887643222      33334444443332221 1110  123356678999999999987644433

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=96.13  E-value=0.0037  Score=38.09  Aligned_cols=35  Identities=17%  Similarity=0.649  Sum_probs=24.5

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      +.+.||.|+..+.+.+.. +.   .....++|+.|++.|
T Consensus         1 M~i~Cp~C~~~y~i~d~~-ip---~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    1 MIITCPNCQAKYEIDDEK-IP---PKGRKVRCSKCGHVF   35 (36)
T ss_pred             CEEECCCCCCEEeCCHHH-CC---CCCcEEECCCCCCEe
Confidence            467899999987765421 21   123578999999876

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.05  E-value=0.052  Score=50.75  Aligned_cols=98  Identities=18%  Similarity=0.165  Sum_probs=67.7

Q ss_pred             cCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec-CCCCCCCCCcce
Q 018003          173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD-ISRLPFASSSID  250 (362)
Q Consensus       173 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d-~~~~p~~~~~fD  250 (362)
                      ....||.+|+=+|+| .|..+..+++.. ..+|+++|.+++-++.|++.         ..-.++... .....--.+.||
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~l---------GAd~~i~~~~~~~~~~~~~~~d  231 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKL---------GADHVINSSDSDALEAVKEIAD  231 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHh---------CCcEEEEcCCchhhHHhHhhCc
Confidence            455679999999988 356777777743 26999999999999999985         222333322 222221123499


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +|+..-.       ...+....+.|++||.+++.-..
T Consensus       232 ~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         232 AIIDTVG-------PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             EEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence            9986543       44588889999999999987544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.95  E-value=0.14  Score=48.57  Aligned_cols=98  Identities=24%  Similarity=0.272  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC------CCCCC-Cc
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------LPFAS-SS  248 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------~p~~~-~~  248 (362)
                      ++.+|+=+|||+ |.++..+++.....+++.+|.+++.++.|++....         ..+.....+      ..... ..
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------DVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------eEeecCccccHHHHHHHHhCCCC
Confidence            445999999998 88887777775557999999999999999985321         122111111      01112 26


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +|+++-.-.     . ..++..+.++++|||.+++.-....
T Consensus       239 ~D~vie~~G-----~-~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         239 ADVVIEAVG-----S-PPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             CCEEEECCC-----C-HHHHHHHHHHhcCCCEEEEEeccCC
Confidence            999884433     2 3478999999999999988765543

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.80  E-value=0.026  Score=49.12  Aligned_cols=97  Identities=24%  Similarity=0.397  Sum_probs=69.8

Q ss_pred             CeEEEEcCccchHHHHHHHhCC---------CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          179 GNIIDASCGSGLFSRIFAKSGL---------FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      .+++|+.+..|.++..+.++..         ...++++|+-+ |             .+.+.+.-+++|+....      
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-------------aPI~GV~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-------------APIEGVIQLQGDITSASTAEAII  108 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-------------CccCceEEeecccCCHhHHHHHH
Confidence            5899999999999999887621         11399999865 2             23578888999998742      


Q ss_pred             --CCCCcceEEEeccc-----ccCCCCH------HHHHHHHHhhccCCcEEEEEEEccC
Q 018003          244 --FASSSIDAVHAGAA-----IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       244 --~~~~~fD~V~~~~v-----l~h~~d~------~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                        |.....|+|+|-+.     ||.+..-      ..+|.-...+|||||.|+.-.+-.+
T Consensus       109 ~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~  167 (294)
T KOG1099|consen  109 EHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR  167 (294)
T ss_pred             HHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence              55568999999765     3433221      2456667789999999997655443

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=95.77  E-value=0.033  Score=49.27  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=53.1

Q ss_pred             HHHHhhcCCCCC--CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCC------CCEEEEEec
Q 018003          167 ELMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK------ENFLLVRAD  238 (362)
Q Consensus       167 ~~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~------~~~~~~~~d  238 (362)
                      +.+.+..+..++  .+|||.-+|-|.-+..++..|.  +|+++|-|+-+....+.-++.......      .+++++.+|
T Consensus        63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d  140 (234)
T PF04445_consen   63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD  140 (234)
T ss_dssp             SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred             cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence            355666655544  3899999999999998887765  999999999765555433222110111      379999999


Q ss_pred             CCC-CCCCCCcceEEEecccccC
Q 018003          239 ISR-LPFASSSIDAVHAGAAIHC  260 (362)
Q Consensus       239 ~~~-~p~~~~~fD~V~~~~vl~h  260 (362)
                      ..+ ++.++.+||+|..--.+.+
T Consensus       141 ~~~~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  141 ALEYLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CCCHCCCHSS--SEEEE--S---
T ss_pred             HHHHHhhcCCCCCEEEECCCCCC
Confidence            866 4555789999998776655

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=95.77  E-value=0.05  Score=56.33  Aligned_cols=132  Identities=16%  Similarity=0.088  Sum_probs=78.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC-------C-----CCEEEEEeCCH---HHHHHHH-----------HHHhhcC----C
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDYSE---NMLKQCY-----------EFVQQES----N  226 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~s~---~~~~~a~-----------~~~~~~~----~  226 (362)
                      +.-+|+|+|-|+|.+.....+..       +     ..+++++|..+   +.+..+.           +..+...    +
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34689999999999765554321       2     24789999644   3332222           1111100    0


Q ss_pred             -------CCCCCEEEEEecCCC-CCCCCCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCCcc
Q 018003          227 -------FPKENFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNL  294 (362)
Q Consensus       227 -------~~~~~~~~~~~d~~~-~p~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~~~  294 (362)
                             ...-.+.++.+|+.+ ++--...||+++.-.- .--.+|    ..+++++.++++|||++.-.+         
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~F-sP~~np~~W~~~~~~~l~~~~~~~~~~~t~t---------  206 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGF-APAKNPDMWSPNLFNALARLARPGATLATFT---------  206 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCC-CCccChhhccHHHHHHHHHHhCCCCEEEEee---------
Confidence                   001245567788754 2212256999986432 111234    489999999999999888322         


Q ss_pred             hhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          295 IPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                                               ....+++-|.++||++.+..-+|.
T Consensus       207 -------------------------~a~~vr~~l~~~GF~v~~~~~~g~  230 (662)
T PRK01747        207 -------------------------SAGFVRRGLQEAGFTVRKVKGFGR  230 (662)
T ss_pred             -------------------------hHHHHHHHHHHcCCeeeecCCCch
Confidence                                     234688889999998876544443

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.64  E-value=0.17  Score=48.66  Aligned_cols=106  Identities=16%  Similarity=0.161  Sum_probs=69.9

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-----CC
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PF  244 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-----p~  244 (362)
                      .....++.+||.+|||. |..+..+++......++++|.+++.++.+++..         ...++...-.+ +     .+
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~  249 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALREL  249 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHH
Confidence            34455688999999987 888888877743236999999999988888741         12222211110 1     11


Q ss_pred             -CCCcceEEEeccc-----------ccCC----CCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          245 -ASSSIDAVHAGAA-----------IHCW----SSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       245 -~~~~fD~V~~~~v-----------l~h~----~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                       ....+|+|+-.-.           +.|.    .++...+.++.+.|+|+|.++....
T Consensus       250 ~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         250 TGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             cCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence             2236898876421           1121    4566789999999999999988743

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK00420 hypothetical protein; Validated

Probab=95.62  E-value=0.0073  Score=46.78  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=23.6

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      -.||.||.|+....          .+...|++||..+...
T Consensus        24 ~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~   53 (112)
T PRK00420         24 KHCPVCGLPLFELK----------DGEVVCPVHGKVYIVK   53 (112)
T ss_pred             CCCCCCCCcceecC----------CCceECCCCCCeeeec
Confidence            56999999997522          2689999999977663

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=95.45  E-value=0.0088  Score=36.91  Aligned_cols=36  Identities=19%  Similarity=0.546  Sum_probs=23.6

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      +.+.||.|+..+........    .....++|++|+..+.
T Consensus         1 M~~~CP~C~~~~~v~~~~~~----~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         1 MRIQCPNCKTSFRVVDSQLG----ANGGKVRCGKCGHVWY   36 (38)
T ss_pred             CEEECCCCCCEEEeCHHHcC----CCCCEEECCCCCCEEE
Confidence            35789999997765431111    1123689999998764

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.43  E-value=0.053  Score=48.96  Aligned_cols=79  Identities=11%  Similarity=0.061  Sum_probs=48.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhC--------CCCEEEEEeCCHHHHHHHHHHHhhcC---CCCCCCEEEEEecCCCCCCCC
Q 018003          178 GGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQES---NFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~---~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+|+|+|+|+|.++..+.+..        ...+++-+|+|+.+.+.-++++....   .....++.+ ..++...|   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            4699999999999998887642        13589999999999888888876520   001234555 33444433   


Q ss_pred             CcceEEEecccccCC
Q 018003          247 SSIDAVHAGAAIHCW  261 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~  261 (362)
                       ..-+|+++.++..+
T Consensus        95 -~~~~iiaNE~~DAl  108 (252)
T PF02636_consen   95 -FPGFIIANELFDAL  108 (252)
T ss_dssp             -CCEEEEEESSGGGS
T ss_pred             -CCEEEEEeeehhcC
Confidence             23355555554443

; PDB: 4F3N_A 1ZKD_B.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.42  E-value=0.02  Score=43.86  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~  211 (362)
                      +....+|+|||+|.+...|...|.  .-+|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY--PGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC--Ccccccccc
Confidence            456799999999999999999987  778999754

; GO: 0008168 methyltransferase activity

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=95.40  E-value=0.084  Score=46.43  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=69.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHH----HHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCC
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN----MLKQCYEFVQQESNFPKENFLLVRADISRLP---FAS  246 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~----~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~  246 (362)
                      .+|+.+||-+|+++|........- ++..-|+++|.|+.    .+..|++         ..|+.-+.-|+....   ..-
T Consensus       154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---------RtNiiPIiEDArhP~KYRmlV  224 (317)
T KOG1596|consen  154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---------RTNIIPIIEDARHPAKYRMLV  224 (317)
T ss_pred             ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---------cCCceeeeccCCCchheeeee
Confidence            467999999999999998887775 77789999999985    4444444         378888888886431   112


Q ss_pred             CcceEEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +-.|+|++.     +..|.   .+.-+..-.||+||.++++.-
T Consensus       225 gmVDvIFaD-----vaqpdq~RivaLNA~~FLk~gGhfvisik  262 (317)
T KOG1596|consen  225 GMVDVIFAD-----VAQPDQARIVALNAQYFLKNGGHFVISIK  262 (317)
T ss_pred             eeEEEEecc-----CCCchhhhhhhhhhhhhhccCCeEEEEEe
Confidence            356777653     23332   344566778999999998754

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.38  E-value=0.08  Score=50.66  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=74.3

Q ss_pred             CCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC-CEEEEEecCCCCC-CCCCcceEEEe
Q 018003          178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRLP-FASSSIDAVHA  254 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~p-~~~~~fD~V~~  254 (362)
                      +.++||.=+|+|.=+..++.. .....|+.-|+|+++++..+++++.+  .... .+.+...|+..+- .....||+|= 
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N--~~~~~~~~v~~~DAn~ll~~~~~~fD~ID-  126 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN--GLEDERIEVSNMDANVLLYSRQERFDVID-  126 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC--T-SGCCEEEEES-HHHHHCHSTT-EEEEE-
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc--cccCceEEEehhhHHHHhhhccccCCEEE-
Confidence            458999999999877666666 33458999999999999999998876  2233 6888888875542 2467899997 


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                         |.-+..|..+|..+.+.+|.||.|.++..
T Consensus       127 ---lDPfGSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  127 ---LDPFGSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             ---E--SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             ---eCCCCCccHhHHHHHHHhhcCCEEEEecc
Confidence               35556788999999999999999998754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=95.37  E-value=0.046  Score=49.49  Aligned_cols=104  Identities=13%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC--CCCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL--PFASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~--p~~~~~fD~V~  253 (362)
                      ..+++|-||-|.|.+.+...+.-...++.-+|++...++..++.+...- +...+++.++.||...+  ....+.||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            4679999999999999888877445689999999999999988765432 33467899999986443  13467899998


Q ss_pred             ecccccCCCCH---------HHHHHHHHhhccCCcEEEEEE
Q 018003          254 AGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       254 ~~~vl~h~~d~---------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .--.     ||         .....-+.+.||+||+++...
T Consensus       201 ~dss-----dpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~  236 (337)
T KOG1562|consen  201 TDSS-----DPVGPACALFQKPYFGLVLDALKGDGVVCTQG  236 (337)
T ss_pred             EecC-----CccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence            6432     33         256778899999999998764

>PHA01634 hypothetical protein

Probab=95.24  E-value=0.15  Score=40.37  Aligned_cols=46  Identities=22%  Similarity=0.192  Sum_probs=40.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~  223 (362)
                      .+.+|+|||++.|..+.+++-+|. ..|+++|+++...+..++.++.
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence            478999999999999999998885 5899999999999999886554

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.08  E-value=0.31  Score=48.45  Aligned_cols=101  Identities=23%  Similarity=0.256  Sum_probs=68.9

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-----------C
Q 018003          175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-----------L  242 (362)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-----------~  242 (362)
                      ..++.+|+=+|+|. |..+...++.. +..|+++|.+++.++++++.          ...++..|..+           +
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aesl----------GA~~v~i~~~e~~~~~~gya~~~  230 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESM----------GAEFLELDFEEEGGSGDGYAKVM  230 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEEeccccccccccchhhhc
Confidence            34688999999997 77666666653 34899999999999988873          22222111111           0


Q ss_pred             C----------CCC--CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          243 P----------FAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       243 p----------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .          +.+  +.+|+|+.......-+.|..+.+++.+.+||||+++....
T Consensus       231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            0          011  3589999877655445565556999999999999886543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.88  E-value=0.24  Score=46.73  Aligned_cols=98  Identities=19%  Similarity=0.216  Sum_probs=61.7

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE---ecCCCCCCCCCcc
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR---ADISRLPFASSSI  249 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~d~~~~p~~~~~f  249 (362)
                      ...++.+||=+|+|. |.++..+++..-..+++++|.+++.++.+++. .       .. .++.   .++.+.....+.+
T Consensus       166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-G-------a~-~vi~~~~~~~~~~~~~~g~~  236 (343)
T PRK09880        166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-G-------AD-KLVNPQNDDLDHYKAEKGYF  236 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-C-------Cc-EEecCCcccHHHHhccCCCC
Confidence            334688999999875 66766666663223689999999988888763 1       11 1111   1121111112358


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      |+|+-     ....+ ..+....++|++||++++...
T Consensus       237 D~vid-----~~G~~-~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        237 DVSFE-----VSGHP-SSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CEEEE-----CCCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence            88864     33333 357888999999999987753

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.81  E-value=0.15  Score=49.91  Aligned_cols=102  Identities=11%  Similarity=0.163  Sum_probs=75.1

Q ss_pred             CCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHH-HhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEF-VQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V  252 (362)
                      ...|+-+|+|.|.+.....+.    ....+++++|-+|+++...+.+ ++..    ..++.++..|+..++.+....|++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W----~~~Vtii~~DMR~w~ap~eq~DI~  443 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW----DNRVTIISSDMRKWNAPREQADII  443 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh----cCeeEEEeccccccCCchhhccch
Confidence            346889999999987665543    2235899999999987766552 3333    678999999999988556789998


Q ss_pred             EecccccCCCCH---HHHHHHHHhhccCCcEEEEE
Q 018003          253 HAGAAIHCWSSP---STGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       253 ~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~  284 (362)
                      ++ ..|..+.|-   .+.|.-+.+.|||+|+.+=.
T Consensus       444 VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~  477 (649)
T KOG0822|consen  444 VS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPS  477 (649)
T ss_pred             HH-HhhccccCccCCHHHHHHHHhhcCCCceEccc
Confidence            85 334444432   36799999999999987743

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=94.69  E-value=0.017  Score=45.72  Aligned_cols=25  Identities=28%  Similarity=0.614  Sum_probs=21.0

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (362)
                      -.||.||.||+...           |.+.||.|++.
T Consensus        29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~~   53 (131)
T COG1645          29 KHCPKCGTPLFRKD-----------GEVFCPVCGYR   53 (131)
T ss_pred             hhCcccCCcceeeC-----------CeEECCCCCce
Confidence            35999999998854           79999999953

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=94.67  E-value=0.14  Score=44.86  Aligned_cols=105  Identities=13%  Similarity=0.102  Sum_probs=67.5

Q ss_pred             ccCCCCCcHHHHHHHHhhcCC------CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003          155 VWGGFPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (362)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  228 (362)
                      +=...++....+..+.+.|..      .++.++||||.|.-..=-.+-.+-++.+.+|.|+++..++.|+..+..+. ..
T Consensus        50 LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~-~l  128 (292)
T COG3129          50 LCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANP-GL  128 (292)
T ss_pred             cCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCc-ch
Confidence            334566677778888887743      24567899999875543333333233499999999999999999887652 12


Q ss_pred             CCCEEEEEe-cCCC----CCCCCCcceEEEecccccC
Q 018003          229 KENFLLVRA-DISR----LPFASSSIDAVHAGAAIHC  260 (362)
Q Consensus       229 ~~~~~~~~~-d~~~----~p~~~~~fD~V~~~~vl~h  260 (362)
                      ...+++... |-..    .--.++.||+++|+--+|-
T Consensus       129 ~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         129 ERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             hhheeEEeccCccccccccccccceeeeEecCCCcch
Confidence            234444432 2111    1123678999999987763

>PRK11524 putative methyltransferase; Provisional

Probab=94.56  E-value=0.14  Score=47.06  Aligned_cols=59  Identities=15%  Similarity=0.143  Sum_probs=49.7

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~  223 (362)
                      |..+++++..... .+|..|||-=+|+|..+.+..+.+.  +++|+|++++..+.|++++..
T Consensus       194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            4666677666654 3588999999999999999888876  999999999999999999754

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=94.51  E-value=0.022  Score=34.12  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=15.4

Q ss_pred             CCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (362)
Q Consensus        74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (362)
                      ||.||+++......     ......+.|++||.+
T Consensus         3 C~~CG~~l~~~ip~-----gd~r~R~vC~~Cg~I   31 (34)
T PF14803_consen    3 CPQCGGPLERRIPE-----GDDRERLVCPACGFI   31 (34)
T ss_dssp             -TTT--B-EEE--T-----T-SS-EEEETTTTEE
T ss_pred             cccccChhhhhcCC-----CCCccceECCCCCCE
Confidence            99999998764321     112457899999975

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.51  E-value=0.026  Score=35.90  Aligned_cols=31  Identities=19%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +.||.|++.....+        ...+.+.|+.||.+...
T Consensus         1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl~e   31 (43)
T PF08271_consen    1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVLEE   31 (43)
T ss_dssp             ESBTTTSSSEEEEE--------TTTTEEEETTT-BBEE-
T ss_pred             CCCcCCcCCceEEc--------CCCCeEECCCCCCEeec
Confidence            57999999752221        23478999999976443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.47  E-value=0.67  Score=42.82  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-------  242 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------  242 (362)
                      +.-..++|.+||-+|+|+ |..+...++..-..+|+.+|++++.++.|++. ...      .+... ......       
T Consensus       163 r~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~------~~~~~-~~~~~~~~~~~~v  234 (354)
T KOG0024|consen  163 RRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GAT------VTDPS-SHKSSPQELAELV  234 (354)
T ss_pred             hhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCe------EEeec-cccccHHHHHHHH
Confidence            334456799999999997 77777777765456999999999999999983 211      11111 111111       


Q ss_pred             --CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          243 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       243 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                        ......+|+.+..-.++      ..++.....+++||.+++..+...
T Consensus       235 ~~~~g~~~~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  235 EKALGKKQPDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE  277 (354)
T ss_pred             HhhccccCCCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence              12224488887655433      457777889999999888876553

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=94.39  E-value=0.03  Score=37.38  Aligned_cols=33  Identities=18%  Similarity=0.460  Sum_probs=24.2

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ++.||.|+..+.....      .. ...+.|+.||..+-.
T Consensus         2 ~~~CP~CG~~iev~~~------~~-GeiV~Cp~CGaeleV   34 (54)
T TIGR01206         2 QFECPDCGAEIELENP------EL-GELVICDECGAELEV   34 (54)
T ss_pred             ccCCCCCCCEEecCCC------cc-CCEEeCCCCCCEEEE
Confidence            4689999998766431      12 457899999987654

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.37  E-value=0.02  Score=43.96  Aligned_cols=27  Identities=11%  Similarity=0.142  Sum_probs=23.7

Q ss_pred             ccCCceecCccCcccccCCceeeeecC
Q 018003           94 AAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (362)
Q Consensus        94 ~~~~~l~C~~C~~~~~~~~g~~~~~~~  120 (362)
                      +.+|.+.|+.||++|++.+|+++++-.
T Consensus        94 v~EG~l~CpetG~vfpI~~GIPNMLL~  120 (124)
T KOG1088|consen   94 VIEGELVCPETGRVFPISDGIPNMLLS  120 (124)
T ss_pred             hccceEecCCCCcEeecccCCcccccC
Confidence            456899999999999999999988754

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=94.34  E-value=0.025  Score=32.79  Aligned_cols=27  Identities=30%  Similarity=0.778  Sum_probs=14.6

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      -.||.|++.....+          ...+.|+.|++.+
T Consensus         3 p~Cp~C~se~~y~D----------~~~~vCp~C~~ew   29 (30)
T PF08274_consen    3 PKCPLCGSEYTYED----------GELLVCPECGHEW   29 (30)
T ss_dssp             ---TTT-----EE-----------SSSEEETTTTEEE
T ss_pred             CCCCCCCCcceecc----------CCEEeCCcccccC
Confidence            36999999877644          3689999999764

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.24  E-value=0.87  Score=42.14  Aligned_cols=169  Identities=10%  Similarity=0.005  Sum_probs=98.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---  243 (362)
                      +.+.+.+... -..|+-+|||--.-...+-. +....|+-+|. |+.++.=++.+.+..+.+....+++..|+..-.   
T Consensus        83 ~~~~~~~~~g-~~qvViLgaGLDTRayRl~~-~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~  159 (297)
T COG3315          83 DFVRAALDAG-IRQVVILGAGLDTRAYRLDW-PKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQ  159 (297)
T ss_pred             HHHHHHHHhc-ccEEEEeccccccceeecCC-CCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHH
Confidence            3444555543 46899999986543333222 12346666665 566666666677663333448999999998432   


Q ss_pred             -CC-----CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccc
Q 018003          244 -FA-----SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFS  315 (362)
Q Consensus       244 -~~-----~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (362)
                       +.     ...-=++++-+++.+++..  .+++..|...+.||-.++.................................
T Consensus       160 ~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  239 (297)
T COG3315         160 ALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRGELV  239 (297)
T ss_pred             HHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccccce
Confidence             22     3334488888999998654  378999999999988888765422110000000000000000000111113


Q ss_pred             cccCCHHHHHHHHHHCCCEEEEE
Q 018003          316 IPVLGFDDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       316 ~~~~s~~~l~~ll~~~Gf~~v~~  338 (362)
                      ....+..++..++.+.||.....
T Consensus       240 ~~~~~~~e~~~~l~~~g~~~~~~  262 (297)
T COG3315         240 YFGDDPAEIETWLAERGWRSTLN  262 (297)
T ss_pred             eccCCHHHHHHHHHhcCEEEEec
Confidence            44466899999999999988766

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=94.21  E-value=0.15  Score=44.72  Aligned_cols=56  Identities=16%  Similarity=0.166  Sum_probs=43.7

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~  219 (362)
                      -|...++++.+... .+|..|||.=||+|..+.+..+.+.  +.+|+|+++...+.|++
T Consensus       176 kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  176 KPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            35666777776664 3588999999999999999999887  99999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK13699 putative methylase; Provisional

Probab=94.20  E-value=0.22  Score=44.21  Aligned_cols=61  Identities=13%  Similarity=0.136  Sum_probs=50.4

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~  224 (362)
                      .|....+.+..... .+|..|||-=||+|..+.+..+.+.  +++|+|+++...+.+.++++..
T Consensus       148 kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        148 KPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHHH
Confidence            35666666665544 3588999999999999999888876  8999999999999999988665

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=94.19  E-value=0.044  Score=38.93  Aligned_cols=50  Identities=14%  Similarity=0.350  Sum_probs=35.2

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecC--ccCcccccCCceeeeecCC
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~--~C~~~~~~~~g~~~~~~~~  121 (362)
                      ++.||.||+.-........ .+...+...+|.  +||+.|...+.+...+...
T Consensus         1 mm~CP~Cg~~a~irtSr~~-s~~~~~~Y~qC~N~eCg~tF~t~es~s~tis~p   52 (72)
T PRK09678          1 MFHCPLCQHAAHARTSRYI-TDTTKERYHQCQNVNCSATFITYESVQRYIVKP   52 (72)
T ss_pred             CccCCCCCCccEEEEChhc-ChhhheeeeecCCCCCCCEEEEEEEEEEEEcCC
Confidence            4789999997754443333 333666788998  8999999877766666543

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=94.07  E-value=0.097  Score=50.40  Aligned_cols=109  Identities=20%  Similarity=0.074  Sum_probs=70.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cC--CCCCCCC-Ccce
Q 018003          177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI--SRLPFAS-SSID  250 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~--~~~p~~~-~~fD  250 (362)
                      ....++|+|.|.|.-..++...  ...-.++.||.+..|.......+....   ..+-.++.. -+  ..+|... ..||
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~---~~g~~~v~~~~~~r~~~pi~~~~~yD  276 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGS---HIGEPIVRKLVFHRQRLPIDIKNGYD  276 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChh---hcCchhccccchhcccCCCCccccee
Confidence            4568889998876654444333  334479999999999999988876620   011111111 11  2245433 4599


Q ss_pred             EEEecccccCCCCHH---HHHHH-HHhhccCCcEEEEEEEcc
Q 018003          251 AVHAGAAIHCWSSPS---TGVAE-ISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~---~~l~~-i~r~LkpgG~li~~~~~~  288 (362)
                      +|++.+.++++.++.   ...++ ..+..++||.+++.....
T Consensus       277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~  318 (491)
T KOG2539|consen  277 LVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGT  318 (491)
T ss_pred             eEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence            999999999998765   23333 345678899999887654

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=94.06  E-value=0.033  Score=40.53  Aligned_cols=32  Identities=25%  Similarity=0.614  Sum_probs=23.9

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +...||.|+.+ ...        .+..++|.|..||..|..
T Consensus        34 ~~~~Cp~C~~~-~Vk--------R~a~GIW~C~kCg~~fAG   65 (89)
T COG1997          34 AKHVCPFCGRT-TVK--------RIATGIWKCRKCGAKFAG   65 (89)
T ss_pred             cCCcCCCCCCc-cee--------eeccCeEEcCCCCCeecc
Confidence            45789999987 222        234589999999988766

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.03  E-value=0.48  Score=44.53  Aligned_cols=103  Identities=21%  Similarity=0.234  Sum_probs=79.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEecc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA  256 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~  256 (362)
                      ..+|||.=+|+|.=+..++...+...++.-|+|+.+++.+++++..+   ...+...+..|+..+-.. ...||+|=   
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N---~~~~~~v~n~DAN~lm~~~~~~fd~ID---  126 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN---SGEDAEVINKDANALLHELHRAFDVID---  126 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc---CcccceeecchHHHHHHhcCCCccEEe---
Confidence            56999999999988777777766558999999999999999998876   234455555676544322 26788885   


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                       |.-+..|..++....+.++.||.+-++-..
T Consensus       127 -iDPFGSPaPFlDaA~~s~~~~G~l~vTATD  156 (380)
T COG1867         127 -IDPFGSPAPFLDAALRSVRRGGLLCVTATD  156 (380)
T ss_pred             -cCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence             345567889999999999999999887543

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.02  E-value=0.34  Score=41.22  Aligned_cols=107  Identities=13%  Similarity=0.075  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-------CC
Q 018003          177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------FA  245 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-------~~  245 (362)
                      ++..|+|+|.-.|.-+..++.    .|...+|+++|++-..+.-+...        .+++.+++++..+..       ..
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e--------~p~i~f~egss~dpai~eqi~~~~  140 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE--------VPDILFIEGSSTDPAIAEQIRRLK  140 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc--------CCCeEEEeCCCCCHHHHHHHHHHh
Confidence            356899999998876655544    36556999999997765544332        478999999987653       12


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCC
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP  291 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~  291 (362)
                      .+.--+.++..+-||.....+.|+-..++|.-|-++++.+.+.++.
T Consensus       141 ~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dl  186 (237)
T COG3510         141 NEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDL  186 (237)
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence            3333455566666766666778888899999999999988777654

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=93.98  E-value=0.17  Score=46.95  Aligned_cols=123  Identities=20%  Similarity=0.158  Sum_probs=85.0

Q ss_pred             HHHHHHHHh-hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHH-------HHHHhhcCCCCCCCEEE
Q 018003          163 EKEFELMKG-YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLL  234 (362)
Q Consensus       163 ~~~~~~l~~-~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-------~~~~~~~~~~~~~~~~~  234 (362)
                      +..+..+.. .....+|..|+|-=.|||.++...+.-|.  -|+|.|++-.++...       +.++++. +....-+.+
T Consensus       193 DAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa--~viGtDIDyr~vragrg~~~si~aNFkQY-g~~~~fldv  269 (421)
T KOG2671|consen  193 DAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA--YVIGTDIDYRTVRAGRGEDESIKANFKQY-GSSSQFLDV  269 (421)
T ss_pred             chhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcc--eeeccccchheeecccCCCcchhHhHHHh-CCcchhhhe
Confidence            333444433 33456799999999999999988888775  999999999888732       3344444 222345678


Q ss_pred             EEecCCCCCCC-CCcceEEEecc------------------------cccCCCCH---------HHHHHHHHhhccCCcE
Q 018003          235 VRADISRLPFA-SSSIDAVHAGA------------------------AIHCWSSP---------STGVAEISRVLRPGGV  280 (362)
Q Consensus       235 ~~~d~~~~p~~-~~~fD~V~~~~------------------------vl~h~~d~---------~~~l~~i~r~LkpgG~  280 (362)
                      +.+|+...|+. ...||+|+|--                        ...|.|..         ...|.-.++.|..||+
T Consensus       270 l~~D~sn~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggr  349 (421)
T KOG2671|consen  270 LTADFSNPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGR  349 (421)
T ss_pred             eeecccCcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCce
Confidence            88999888765 45799999851                        11233221         1456677899999999


Q ss_pred             EEEEEEcc
Q 018003          281 FVGTTYIV  288 (362)
Q Consensus       281 li~~~~~~  288 (362)
                      +++..|..
T Consensus       350 lv~w~p~~  357 (421)
T KOG2671|consen  350 LVFWLPTI  357 (421)
T ss_pred             EEEecCch
Confidence            99887744

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=93.95  E-value=1.2  Score=42.82  Aligned_cols=121  Identities=16%  Similarity=0.124  Sum_probs=69.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchH----HHHHHHh--C-CCCEEEEEeC----CHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLF----SRIFAKS--G-LFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLV  235 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~----~~~l~~~--~-~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~  235 (362)
                      ..|++.+.....-.|+|+|.|.|.-    ...|+.+  + |..++||++.    +...++.+.+++.+.-....-..+|.
T Consensus       100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~  179 (374)
T PF03514_consen  100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH  179 (374)
T ss_pred             HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence            4455555555667899999999863    4444443  2 4568999999    77777777776543210012233443


Q ss_pred             Ee---cCCCC-----CCCCCcceEEEecccccCCCC-------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          236 RA---DISRL-----PFASSSIDAVHAGAAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       236 ~~---d~~~~-----p~~~~~fD~V~~~~vl~h~~d-------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ..   +.+.+     ....+..=+|-+...|||+.+       |...+-...+.|+|.-+++ .+...
T Consensus       180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~-~E~ea  246 (374)
T PF03514_consen  180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVL-VEQEA  246 (374)
T ss_pred             ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEE-EeecC
Confidence            32   22332     122333334556666898862       3444555566789985444 44433

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=93.91  E-value=0.13  Score=49.10  Aligned_cols=61  Identities=15%  Similarity=0.260  Sum_probs=50.4

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ..+||||.|||.++..+++.|. ..|+++|.-..|.+.|++...++  +..+++.++.--..++
T Consensus        68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn--g~SdkI~vInkrStev  128 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN--GMSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC--CCccceeeecccccee
Confidence            3689999999999999999985 47999999999999999988775  5577888776555443

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=93.81  E-value=0.037  Score=45.72  Aligned_cols=40  Identities=25%  Similarity=0.516  Sum_probs=24.3

Q ss_pred             eeCCCCCCCcc-cccCCCCccccccCCceecCccCcccccC
Q 018003           72 LACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        72 l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      +.||-|+++.. .........+.......+|++||..|..-
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~   41 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTF   41 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEe
Confidence            47999999773 22211122222223348999999988773

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=93.77  E-value=0.11  Score=41.49  Aligned_cols=87  Identities=17%  Similarity=0.190  Sum_probs=54.6

Q ss_pred             CCEEEEEecCCC-CCCCCCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh
Q 018003          230 ENFLLVRADISR-LPFASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV  304 (362)
Q Consensus       230 ~~~~~~~~d~~~-~p~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~  304 (362)
                      -.+.+..+|+.+ ++--...||+|+...- ---.+|    ..+++++.++++|||.+.-.+                   
T Consensus        31 v~L~L~~gDa~~~l~~l~~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys-------------------   90 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQLDARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYS-------------------   90 (124)
T ss_dssp             EEEEEEES-HHHHHHHB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------------
T ss_pred             EEEEEEEcHHHHHHHhCcccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEee-------------------
Confidence            456677778744 2322367999986542 222345    489999999999999777221                   


Q ss_pred             hhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEecee-EEEEeeC
Q 018003          305 CFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHI-QHYIVKI  351 (362)
Q Consensus       305 ~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~-~~~~~~k  351 (362)
                                     ....+++.|.++||.+.+.--+|.- .+..+.+
T Consensus        91 ---------------~a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~  123 (124)
T PF05430_consen   91 ---------------SAGAVRRALQQAGFEVEKVPGFGRKREMLRAVK  123 (124)
T ss_dssp             ----------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC
T ss_pred             ---------------chHHHHHHHHHcCCEEEEcCCCCCcchheEEEc
Confidence                           1235899999999999877766543 5555544

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=93.73  E-value=0.073  Score=48.11  Aligned_cols=107  Identities=17%  Similarity=0.181  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-------HHhhcCCCCCCCEEEEEecCCCCCC-CCC-
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------FVQQESNFPKENFLLVRADISRLPF-ASS-  247 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~d~~~~p~-~~~-  247 (362)
                      .+++|||+|||.|.-...+...+. ..+...|.+...++...-       .+....+....-..+...+..+.-+ ..+ 
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            478999999999998888777763 478888888776632110       0000000001111111221101110 112 


Q ss_pred             -cceEEEecccccCCCCHHHH-HHHHHhhccCCcEEEEE
Q 018003          248 -SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVGT  284 (362)
Q Consensus       248 -~fD~V~~~~vl~h~~d~~~~-l~~i~r~LkpgG~li~~  284 (362)
                       .||+|.+...+.-......+ +.....+++++|+++..
T Consensus       195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a  233 (282)
T KOG2920|consen  195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA  233 (282)
T ss_pred             cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence             79999999998876655555 66677788999987754

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=93.63  E-value=0.04  Score=30.85  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=18.3

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      .||.|+.....             ..-.|+.||+.|.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            59999987543             3568999998764

Several members are annotated as putative helicases.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=93.34  E-value=0.65  Score=43.78  Aligned_cols=95  Identities=15%  Similarity=0.116  Sum_probs=59.1

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003          175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (362)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V  252 (362)
                      ..++.+||-+|||. |.++..++++ ....+++++|.+++-++.+++ +.        .. ....+   +. ....+|+|
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~--------~~-~~~~~---~~-~~~g~d~v  226 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD--------ET-YLIDD---IP-EDLAVDHA  226 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC--------ce-eehhh---hh-hccCCcEE
Confidence            45688999999886 6666665654 223489999999988887764 11        11 11111   11 11247888


Q ss_pred             EecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +-.-.  . ..-...+.+..++|++||++++.-.
T Consensus       227 iD~~G--~-~~~~~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         227 FECVG--G-RGSQSAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             EECCC--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence            74221  0 0123468889999999999987653

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.31  E-value=0.044  Score=38.86  Aligned_cols=37  Identities=27%  Similarity=0.503  Sum_probs=26.6

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCce
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTH  114 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~  114 (362)
                      ++.||+|+-.+.......+       .+-.|+.|+-++..+...
T Consensus         1 ~llCP~C~v~l~~~~rs~v-------EiD~CPrCrGVWLDrGEL   37 (88)
T COG3809           1 MLLCPICGVELVMSVRSGV-------EIDYCPRCRGVWLDRGEL   37 (88)
T ss_pred             CcccCcCCceeeeeeecCc-------eeeeCCccccEeecchhH
Confidence            4679999998876553333       356899999998875443

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=93.25  E-value=0.093  Score=33.85  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=23.2

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.||.||..+.....         ...++|+.||.....
T Consensus         2 ~~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~~~   33 (46)
T PRK00398          2 AEYKCARCGREVELDEY---------GTGVRCPYCGYRILF   33 (46)
T ss_pred             CEEECCCCCCEEEECCC---------CCceECCCCCCeEEE
Confidence            46889999998876541         137899999975443

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=93.17  E-value=0.061  Score=31.75  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=15.6

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      -||.||++......         +...+|+.|++.+
T Consensus         5 fC~~CG~~t~~~~~---------g~~r~C~~Cg~~~   31 (32)
T PF09297_consen    5 FCGRCGAPTKPAPG---------GWARRCPSCGHEH   31 (32)
T ss_dssp             B-TTT--BEEE-SS---------SS-EEESSSS-EE
T ss_pred             ccCcCCccccCCCC---------cCEeECCCCcCEe
Confidence            49999998876542         3578999999753

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>PRK13699 putative methylase; Provisional

Probab=93.10  E-value=0.22  Score=44.22  Aligned_cols=51  Identities=14%  Similarity=0.256  Sum_probs=31.4

Q ss_pred             EEEEecCCCC--CCCCCcceEEEecccc----cC-----C--C---C-HHHHHHHHHhhccCCcEEEE
Q 018003          233 LLVRADISRL--PFASSSIDAVHAGAAI----HC-----W--S---S-PSTGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       233 ~~~~~d~~~~--p~~~~~fD~V~~~~vl----~h-----~--~---d-~~~~l~~i~r~LkpgG~li~  283 (362)
                      +++++|..+.  .++++++|+|+..---    ..     +  .   + ....+.++.|+|||||.+++
T Consensus         3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3556665443  3557777777765110    00     0  0   0 13678999999999998875

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=93.07  E-value=1.6  Score=36.69  Aligned_cols=127  Identities=17%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             EcCccchHHHHHHHhCC-CCEEEEEeCCH--HHHHHHH---HHHhhcCCCCCCCEE-EEEecCCCCC----CCCCcceEE
Q 018003          184 ASCGSGLFSRIFAKSGL-FSLVVALDYSE--NMLKQCY---EFVQQESNFPKENFL-LVRADISRLP----FASSSIDAV  252 (362)
Q Consensus       184 iGcG~G~~~~~l~~~~~-~~~v~gvD~s~--~~~~~a~---~~~~~~~~~~~~~~~-~~~~d~~~~p----~~~~~fD~V  252 (362)
                      ||=|.=.|+..|++... ...+++.-++.  +..+...   ++++..   ...++. .+..|+..+.    ...+.||.|
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L---~~~g~~V~~~VDat~l~~~~~~~~~~FDrI   79 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL---RELGVTVLHGVDATKLHKHFRLKNQRFDRI   79 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH---hhcCCccccCCCCCcccccccccCCcCCEE
Confidence            56666677778877743 45666554443  3333222   222222   012233 3445776654    356889999


Q ss_pred             EecccccCCC------C---------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccc
Q 018003          253 HAGAAIHCWS------S---------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIP  317 (362)
Q Consensus       253 ~~~~vl~h~~------d---------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (362)
                      +.++-  |..      +         ...+++.+.++|+++|.+.++.-....                           
T Consensus        80 iFNFP--H~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p---------------------------  130 (166)
T PF10354_consen   80 IFNFP--HVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP---------------------------  130 (166)
T ss_pred             EEeCC--CCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC---------------------------
Confidence            98763  333      0         126788999999999999988654321                           


Q ss_pred             cCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          318 VLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       318 ~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                       ++.-.+.++.+++||..++...+..
T Consensus       131 -y~~W~i~~lA~~~gl~l~~~~~F~~  155 (166)
T PF10354_consen  131 -YDSWNIEELAAEAGLVLVRKVPFDP  155 (166)
T ss_pred             -CccccHHHHHHhcCCEEEEEecCCH
Confidence             2333577888999999888776653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=93.06  E-value=0.31  Score=44.61  Aligned_cols=68  Identities=24%  Similarity=0.325  Sum_probs=52.2

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC--CCcceEEEeccc
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--SSSIDAVHAGAA  257 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~--~~~fD~V~~~~v  257 (362)
                      +++|+-||.|.+...+...|. ..+.++|+++.+++..+++.        +.. .+.+|+..+...  .+.+|+|+...-
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~--------~~~-~~~~Di~~~~~~~~~~~~D~l~~gpP   71 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANF--------PNK-LIEGDITKIDEKDFIPDIDLLTGGFP   71 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhC--------CCC-CccCccccCchhhcCCCCCEEEeCCC
Confidence            689999999999999988874 46789999999998888753        222 567788776432  357999997643

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PHA00626 hypothetical protein

Probab=92.88  E-value=0.071  Score=35.28  Aligned_cols=34  Identities=18%  Similarity=0.400  Sum_probs=21.6

Q ss_pred             eeCCCCCCC-cccccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +.||.|++. ....+  ..   ....+.+.|+.||..|..
T Consensus         1 m~CP~CGS~~Ivrcg--~c---r~~snrYkCkdCGY~ft~   35 (59)
T PHA00626          1 MSCPKCGSGNIAKEK--TM---RGWSDDYVCCDCGYNDSK   35 (59)
T ss_pred             CCCCCCCCceeeeec--ee---cccCcceEcCCCCCeech
Confidence            369999994 33221  00   012468999999987765

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=92.84  E-value=1.6  Score=43.62  Aligned_cols=130  Identities=18%  Similarity=0.160  Sum_probs=79.3

Q ss_pred             CCCCCcHHHHHHHHhhcCCC--CCCeEEEEcCccchHHHHHHHh---C-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC
Q 018003          157 GGFPGPEKEFELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKS---G-LFSLVVALDYSENMLKQCYEFVQQESNFPKE  230 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~---~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~  230 (362)
                      +.++.|......+.+.+.+.  ++..|.|.-||+|.++....+.   + ....++|.+..+.+...++..+.-+ +....
T Consensus       195 g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~-~~~~~  273 (501)
T TIGR00497       195 GEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH-NIDYA  273 (501)
T ss_pred             ceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc-CCCcc
Confidence            34566777777777766543  5678999999999988654432   1 1246999999999999998875333 01111


Q ss_pred             CEEEEEecCCC-CCC-CCCcceEEEecccc--------------------cC----CCC-HHHHHHHHHhhccCCcEEEE
Q 018003          231 NFLLVRADISR-LPF-ASSSIDAVHAGAAI--------------------HC----WSS-PSTGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       231 ~~~~~~~d~~~-~p~-~~~~fD~V~~~~vl--------------------~h----~~d-~~~~l~~i~r~LkpgG~li~  283 (362)
                      ......+|-.. ..+ ....||.|+++--.                    .|    ..+ -..++..+...|++||...+
T Consensus       274 t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~ai  353 (501)
T TIGR00497       274 NFNIINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAI  353 (501)
T ss_pred             ccCcccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEE
Confidence            22222333222 111 23457777654311                    11    111 13678889999999998766


Q ss_pred             EEEc
Q 018003          284 TTYI  287 (362)
Q Consensus       284 ~~~~  287 (362)
                      ..+.
T Consensus       354 I~~~  357 (501)
T TIGR00497       354 VCFP  357 (501)
T ss_pred             EecC
Confidence            6554

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=92.74  E-value=1.5  Score=39.71  Aligned_cols=96  Identities=19%  Similarity=0.249  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC---CCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~---~~~fD~V~  253 (362)
                      .|+.|+-+| -.-.++.+++-.+-..++..+|+++..+....+..++.   +..++..+.-|+.+ |++   .+.||+.+
T Consensus       152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~---g~~~ie~~~~Dlr~-plpe~~~~kFDvfi  226 (354)
T COG1568         152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL---GYNNIEAFVFDLRN-PLPEDLKRKFDVFI  226 (354)
T ss_pred             CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh---Cccchhheeehhcc-cChHHHHhhCCeee
Confidence            577899999 55566666666665569999999999999998877776   35668888889865 333   36899988


Q ss_pred             ecccccCCCCHHHHHHHH-------HhhccCC---cEEEEEE
Q 018003          254 AGAAIHCWSSPSTGVAEI-------SRVLRPG---GVFVGTT  285 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i-------~r~Lkpg---G~li~~~  285 (362)
                              .||...+..+       ...||..   |++.++.
T Consensus       227 --------TDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~  260 (354)
T COG1568         227 --------TDPPETIKALKLFLGRGIATLKGEGCAGYFGITR  260 (354)
T ss_pred             --------cCchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence                    4665443333       3455554   6666654

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=92.71  E-value=0.056  Score=41.95  Aligned_cols=24  Identities=33%  Similarity=0.872  Sum_probs=20.0

Q ss_pred             CCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ||+|++++...             .++|++|+...-.
T Consensus         1 CPvCg~~l~vt-------------~l~C~~C~t~i~G   24 (113)
T PF09862_consen    1 CPVCGGELVVT-------------RLKCPSCGTEIEG   24 (113)
T ss_pred             CCCCCCceEEE-------------EEEcCCCCCEEEe
Confidence            99999998873             6999999976544

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.69  E-value=0.57  Score=46.57  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-------------
Q 018003          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-------------  241 (362)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-------------  241 (362)
                      .++.+++=+|+|. |..+..+++.. +..|+++|.+++.++.+++.          ...++..|..+             
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l----------Ga~~v~v~~~e~g~~~~gYa~~~s  230 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM----------GAEFLELDFKEEGGSGDGYAKVMS  230 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCeEEeccccccccccccceeecC
Confidence            3568999999997 56665555542 34899999999988877762          12222222211             


Q ss_pred             ----------CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          242 ----------LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       242 ----------~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                                ++-.-..+|+|+..-.+..-+.|.-+.+++.+.+|||++++
T Consensus       231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEE
Confidence                      11112469999887767766777778899999999999876

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.61  E-value=3.5  Score=36.78  Aligned_cols=107  Identities=19%  Similarity=0.274  Sum_probs=70.3

Q ss_pred             CCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CCCCCCc
Q 018003          177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSS  248 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p~~~~~  248 (362)
                      .+...+|+|+|+..-++.+.+    ++.-.+++.+|+|...++...+.+...  .+.-.+.-+++|.+.    +| ..++
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~--y~~l~v~~l~~~~~~~La~~~-~~~~  154 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE--YPGLEVNALCGDYELALAELP-RGGR  154 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh--CCCCeEeehhhhHHHHHhccc-CCCe
Confidence            357899999998876555544    455568999999999888766655554  223345556677642    33 1222


Q ss_pred             ceEEEecccccCCC-CH-HHHHHHHHhhccCCcEEEEEEE
Q 018003          249 IDAVHAGAAIHCWS-SP-STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       249 fD~V~~~~vl~h~~-d~-~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ==.++...+|..+. ++ ..+|..++..|+||-.+++-+-
T Consensus       155 Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         155 RLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             EEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence            22333345566653 22 4789999999999999887653

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=92.46  E-value=0.08  Score=35.13  Aligned_cols=28  Identities=25%  Similarity=0.585  Sum_probs=22.6

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      -.|+.|+.++...+           .++.|+.|+..|..
T Consensus         6 ~~C~~Cg~~~~~~d-----------DiVvCp~CgapyHR   33 (54)
T PF14446_consen    6 CKCPVCGKKFKDGD-----------DIVVCPECGAPYHR   33 (54)
T ss_pred             ccChhhCCcccCCC-----------CEEECCCCCCcccH
Confidence            46999999987544           58999999987765

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=92.40  E-value=1.6  Score=45.25  Aligned_cols=109  Identities=13%  Similarity=0.042  Sum_probs=61.2

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHhhcCCCCCCCEEEEEecC---CCCCCCCCcceEEEe
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-FVQQESNFPKENFLLVRADI---SRLPFASSSIDAVHA  254 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~d~---~~~p~~~~~fD~V~~  254 (362)
                      ..+--.|.||=.....+.+..|+..++-+|-+...-+.+-+ .+...   ......++.|.=   ....|++=+-=.|+.
T Consensus       484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~---~~ge~dILiGTQmiaKG~~fp~vtLVgvl~  560 (730)
T COG1198         484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQF---ANGEADILIGTQMIAKGHDFPNVTLVGVLD  560 (730)
T ss_pred             CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHH---hCCCCCeeecchhhhcCCCcccceEEEEEe
Confidence            35778899999999999999998899999987755333222 12211   012333443321   122344433335555


Q ss_pred             cccccCCCCHH---HHHHHHHhhc----c--CCcEEEEEEEccCC
Q 018003          255 GAAIHCWSSPS---TGVAEISRVL----R--PGGVFVGTTYIVDG  290 (362)
Q Consensus       255 ~~vl~h~~d~~---~~l~~i~r~L----k--pgG~li~~~~~~~~  290 (362)
                      .+..-+.+|..   .+++-+..+.    +  .-|.+++.|.+++.
T Consensus       561 aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h  605 (730)
T COG1198         561 ADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH  605 (730)
T ss_pred             chhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence            56666667764   2333332222    1  34667778887654

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=92.33  E-value=0.13  Score=46.78  Aligned_cols=102  Identities=17%  Similarity=0.195  Sum_probs=71.9

Q ss_pred             CCeEEEEcCccchHHH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      +..|+|+=+|.|+|+. .+...|. ..|+++|.++..++..++.++.+  ....+..++.+|-... -++...|-|..  
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N--~V~~r~~i~~gd~R~~-~~~~~AdrVnL--  268 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEAN--NVMDRCRITEGDNRNP-KPRLRADRVNL--  268 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhc--chHHHHHhhhcccccc-Cccccchheee--
Confidence            5789999999999998 6677664 58999999999999999887665  2234445556665443 34667777774  


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcE-EEEEEEc
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGV-FVGTTYI  287 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~-li~~~~~  287 (362)
                        .-+|.-++-.-.+.++|||.|- ++-..-+
T Consensus       269 --GLlPSse~~W~~A~k~Lk~eggsilHIHen  298 (351)
T KOG1227|consen  269 --GLLPSSEQGWPTAIKALKPEGGSILHIHEN  298 (351)
T ss_pred             --ccccccccchHHHHHHhhhcCCcEEEEecc
Confidence              3356666667777888888655 4433333

>PTZ00357 methyltransferase; Provisional

Probab=92.32  E-value=0.76  Score=46.63  Aligned_cols=100  Identities=11%  Similarity=0.122  Sum_probs=65.3

Q ss_pred             eEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHhhcCCC------CCCCEEEEEecCCCCCCC----
Q 018003          180 NIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNF------PKENFLLVRADISRLPFA----  245 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------~~~~~~~~~~d~~~~p~~----  245 (362)
                      .|+-+|+|-|.+.....+.    +-..++++||-++..+.....+.......      ....++++..|+..+..+    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            5899999999987665543    44568999999976554544443221000      023589999999887432    


Q ss_pred             -------CCcceEEEecccccCCCCH---HHHHHHHHhhccC----CcE
Q 018003          246 -------SSSIDAVHAGAAIHCWSSP---STGVAEISRVLRP----GGV  280 (362)
Q Consensus       246 -------~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~Lkp----gG~  280 (362)
                             -+++|+|++ ..|.-+.|-   .+.|..+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence                   137999986 233334332   2568888888887    776

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=91.93  E-value=2.7  Score=39.06  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=61.8

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC------CCCC
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFAS  246 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~------p~~~  246 (362)
                      ...++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.          .+..+..+-...      ....
T Consensus       162 ~~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~  230 (338)
T cd08254         162 EVKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKEL----------GADEVLNSLDDSPKDKKAAGLG  230 (338)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh----------CCCEEEcCCCcCHHHHHHHhcC
Confidence            345678899888763 77777776653 34799999999988887652          111111111110      1234


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +.+|+|+....      ....++++.+.|+++|.++....
T Consensus       231 ~~~D~vid~~g------~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         231 GGFDVIFDFVG------TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             CCceEEEECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence            56898874321      23568889999999999987643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR00595 priA primosomal protein N'

Probab=91.78  E-value=4.3  Score=40.61  Aligned_cols=33  Identities=12%  Similarity=0.083  Sum_probs=23.0

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE  211 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~  211 (362)
                      ..+--.|.|+-.....+.+..|+..+..+|-+.
T Consensus       262 ~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~  294 (505)
T TIGR00595       262 EDLVYKGYGTEQVEEELAKLFPGARIARIDSDT  294 (505)
T ss_pred             CeeEeecccHHHHHHHHHhhCCCCcEEEEeccc
Confidence            356667777777777777776666777777543

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=91.70  E-value=0.072  Score=43.99  Aligned_cols=42  Identities=19%  Similarity=0.409  Sum_probs=24.9

Q ss_pred             CCeeeCCCCCCCcccccCCCCc------cccccCCceecCccCccccc
Q 018003           69 KNVLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        69 ~~~l~CP~C~~~l~~~~~~~~~------~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ...-.||.|+++|.....+.+.      .-......++|++||..|-.
T Consensus        95 ~e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiYW~  142 (165)
T COG1656          95 PEFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIYWK  142 (165)
T ss_pred             cccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccccC
Confidence            3467899999987543311110      11122346789999987654

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=91.65  E-value=0.12  Score=33.95  Aligned_cols=27  Identities=22%  Similarity=0.344  Sum_probs=19.2

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      .||.|++.+....          .+.+.|..||..+-
T Consensus        22 fCP~Cg~~~m~~~----------~~r~~C~~Cgyt~~   48 (50)
T PRK00432         22 FCPRCGSGFMAEH----------LDRWHCGKCGYTEF   48 (50)
T ss_pred             cCcCCCcchhecc----------CCcEECCCcCCEEe
Confidence            6999998532221          26899999997653

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.43  E-value=2.1  Score=40.47  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=58.4

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeC---CHHHHHHHHHHHhhcCCCCCCCEEEEEe---cCCCCCCCCC
Q 018003          175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQESNFPKENFLLVRA---DISRLPFASS  247 (362)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~~p~~~~  247 (362)
                      ..++.+||-+|+|. |.++..+++.. +.++++++.   ++..++.+++.          ....+..   +..+.. ..+
T Consensus       170 ~~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~----------Ga~~v~~~~~~~~~~~-~~~  237 (355)
T cd08230         170 TWNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEEL----------GATYVNSSKTPVAEVK-LVG  237 (355)
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHc----------CCEEecCCccchhhhh-hcC
Confidence            34678999999875 77777676653 348999986   67677766652          1112211   111100 124


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .+|+|+-.-     ..+ ..+.+..+.|++||.+++...
T Consensus       238 ~~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         238 EFDLIIEAT-----GVP-PLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             CCCEEEECc-----CCH-HHHHHHHHHccCCcEEEEEec
Confidence            588887433     233 367888999999999887643

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.28  E-value=1.5  Score=40.70  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      ++.++|=+|||. |.++..+++......++++|.+++.++.+.+.         .   .+  |....  ....+|+|+-.
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---------~---~i--~~~~~--~~~g~Dvvid~  207 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---------E---VL--DPEKD--PRRDYRAIYDA  207 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---------c---cc--Chhhc--cCCCCCEEEEC
Confidence            467899889875 77777777763223477889888776666531         0   11  11110  12458888743


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                           ...+ ..+..+.+.|+++|++++.-.
T Consensus       208 -----~G~~-~~~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       208 -----SGDP-SLIDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             -----CCCH-HHHHHHHHhhhcCcEEEEEee
Confidence                 3333 357888999999999997654

>PRK05580 primosome assembly protein PriA; Validated

Probab=91.18  E-value=3.9  Score=42.51  Aligned_cols=31  Identities=10%  Similarity=0.124  Sum_probs=20.9

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCC
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s  210 (362)
                      .+-..|.|+-.....+.+..++..+.-+|-+
T Consensus       431 ~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d  461 (679)
T PRK05580        431 DLVPVGPGTERLEEELAELFPEARILRIDRD  461 (679)
T ss_pred             eeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence            4666677777777777776666667766644

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.16  E-value=3.8  Score=38.35  Aligned_cols=94  Identities=14%  Similarity=0.030  Sum_probs=60.0

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceE
Q 018003          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~  251 (362)
                      ....++.+||-.|+|. |.++..+++.. +.++++++.+++-++.+++.        ... .++  +....  ..+.+|+
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~--------Ga~-~vi--~~~~~--~~~~~d~  226 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALAL--------GAA-SAG--GAYDT--PPEPLDA  226 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHh--------CCc-eec--ccccc--CcccceE
Confidence            4556788999999764 55555565553 34899999999888888763        111 111  11111  1235787


Q ss_pred             EEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       252 V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ++....     .+ ..+....+.|++||++++.-.
T Consensus       227 ~i~~~~-----~~-~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       227 AILFAP-----AG-GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             EEECCC-----cH-HHHHHHHHhhCCCcEEEEEec
Confidence            654332     22 368889999999999987654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.14  E-value=1.4  Score=34.74  Aligned_cols=86  Identities=26%  Similarity=0.256  Sum_probs=57.4

Q ss_pred             ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----C-CCCCcceEEEecccccC
Q 018003          187 GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FASSSIDAVHAGAAIHC  260 (362)
Q Consensus       187 G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p-~~~~~fD~V~~~~vl~h  260 (362)
                      |.|.++..+++... .+++++|.++.-++.+++.         .-..++..+-.++     . .....+|+|+-.     
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~---------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~-----   65 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL---------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDC-----   65 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT---------TESEEEETTTSSHHHHHHHHTTTSSEEEEEES-----
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh---------cccccccccccccccccccccccccceEEEEe-----
Confidence            45777777777643 7999999999999998873         1111222221111     1 223479999843     


Q ss_pred             CCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          261 WSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       261 ~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ... ...++....+|+|+|++++.....
T Consensus        66 ~g~-~~~~~~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   66 VGS-GDTLQEAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             SSS-HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred             cCc-HHHHHHHHHHhccCCEEEEEEccC
Confidence            333 357999999999999999876544

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.91  E-value=3.8  Score=38.74  Aligned_cols=97  Identities=18%  Similarity=0.098  Sum_probs=59.9

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----C-CCC
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----P-FAS  246 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p-~~~  246 (362)
                      ...++.+||-.|+|. |..+..+++......|+++|.++...+.+++.         .--.++...-.+.     . ...
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~i~~~~~~  243 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREF---------GATHTVNSSGTDPVEAIRALTGG  243 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCceEEcCCCcCHHHHHHHHhCC
Confidence            445688999999865 66666666653222599999999988888652         1111221111110     0 112


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..+|+|+-     ....+ ..+....+.|++||++++.-
T Consensus       244 ~g~d~vid-----~~g~~-~~~~~~~~~~~~~G~iv~~G  276 (358)
T TIGR03451       244 FGADVVID-----AVGRP-ETYKQAFYARDLAGTVVLVG  276 (358)
T ss_pred             CCCCEEEE-----CCCCH-HHHHHHHHHhccCCEEEEEC
Confidence            35888874     33333 35777889999999998764

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=90.75  E-value=0.23  Score=31.68  Aligned_cols=29  Identities=14%  Similarity=0.361  Sum_probs=22.1

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      .+.|..||..+....          ...++|+.||+-..
T Consensus         2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rIl   30 (44)
T smart00659        2 IYICGECGRENEIKS----------KDVVRCRECGYRIL   30 (44)
T ss_pred             EEECCCCCCEeecCC----------CCceECCCCCceEE
Confidence            478999999876542          35799999997543

present in RNA polymerase I, II and III

>PRK14873 primosome assembly protein PriA; Provisional

Probab=90.67  E-value=3.8  Score=42.41  Aligned_cols=96  Identities=14%  Similarity=0.020  Sum_probs=55.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +..+--.|-|+-.....+.+..|+..|.-+|-+. .++.    +       .....++.+.-...|...+.+.+|.....
T Consensus       430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~-~l~~----~-------~~~~~IlVGTqgaepm~~g~~~lV~ilda  497 (665)
T PRK14873        430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQ-VVDT----V-------DAGPALVVATPGAEPRVEGGYGAALLLDA  497 (665)
T ss_pred             CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHH-HHHh----h-------ccCCCEEEECCCCcccccCCceEEEEEcc
Confidence            3457788888888888888888878888887542 2221    1       12455666653223333356776654332


Q ss_pred             --ccCCCCH---HHHHHHHHhhc------cCCcEEEEEE
Q 018003          258 --IHCWSSP---STGVAEISRVL------RPGGVFVGTT  285 (362)
Q Consensus       258 --l~h~~d~---~~~l~~i~r~L------kpgG~li~~~  285 (362)
                        +-+.+|.   +.+++.+.++.      +++|.+++.+
T Consensus       498 D~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~  536 (665)
T PRK14873        498 WALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA  536 (665)
T ss_pred             hhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence              2333443   34444444332      3468888874

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=90.62  E-value=0.14  Score=35.91  Aligned_cols=28  Identities=36%  Similarity=1.018  Sum_probs=18.2

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +.||.|+.+|...+           +.++|..|+..|..
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~   29 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK   29 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred             CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence            46999999988765           68888888876654

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PRK10220 hypothetical protein; Provisional

Probab=90.54  E-value=0.22  Score=38.00  Aligned_cols=31  Identities=19%  Similarity=0.583  Sum_probs=24.7

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      +-.||.|.+......          ...+.|+.|++.+...
T Consensus         3 lP~CP~C~seytY~d----------~~~~vCpeC~hEW~~~   33 (111)
T PRK10220          3 LPHCPKCNSEYTYED----------NGMYICPECAHEWNDA   33 (111)
T ss_pred             CCcCCCCCCcceEcC----------CCeEECCcccCcCCcc
Confidence            356999999887654          3579999999998774

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=90.48  E-value=0.15  Score=39.41  Aligned_cols=33  Identities=15%  Similarity=0.427  Sum_probs=24.6

Q ss_pred             CCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        69 ~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      ...-.||.||..|.--.          .....||.||..|+..
T Consensus         7 GtKR~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    7 GTKRTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCcccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence            34567999999875211          2578899999999884

The function of members of this family is unknown.

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=90.33  E-value=0.21  Score=38.09  Aligned_cols=30  Identities=27%  Similarity=0.677  Sum_probs=24.1

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      -.||.|++......          ...+.|+.|++.+...
T Consensus         3 p~CP~C~seytY~d----------g~~~iCpeC~~EW~~~   32 (109)
T TIGR00686         3 PPCPKCNSEYTYHD----------GTQLICPSCLYEWNEN   32 (109)
T ss_pred             CcCCcCCCcceEec----------CCeeECcccccccccc
Confidence            46999999887654          3579999999998764

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=90.01  E-value=0.35  Score=31.84  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCcccccCC
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~  112 (362)
                      -||.||..+......       ....+.|+.||..+....
T Consensus         2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~   34 (52)
T smart00661        2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQ   34 (52)
T ss_pred             CCCCCCCccccccCC-------CCCEEECCcCCCeEECCC
Confidence            499999977654311       113789999998776643

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=89.91  E-value=4.1  Score=38.82  Aligned_cols=99  Identities=21%  Similarity=0.159  Sum_probs=60.3

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----CCC
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFA  245 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p~~  245 (362)
                      .....++.+||=.|+|. |.++..+++..-...|+++|.+++.++.+++.        .. ..++..+-.++     ...
T Consensus       186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga-~~~i~~~~~~~~~~i~~~~  256 (371)
T cd08281         186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAREL--------GA-TATVNAGDPNAVEQVRELT  256 (371)
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHc--------CC-ceEeCCCchhHHHHHHHHh
Confidence            34455688999899875 66666666653222699999999988888652        11 11111111110     011


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+.+|+|+-.     ...+ ..+....+.|+++|.++...
T Consensus       257 ~~g~d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         257 GGGVDYAFEM-----AGSV-PALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             CCCCCEEEEC-----CCCh-HHHHHHHHHHhcCCEEEEEc
Confidence            2358888742     2222 45778889999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=89.74  E-value=0.19  Score=30.54  Aligned_cols=28  Identities=18%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (362)
                      ....|+.|++.+....          .+.+.|..||++
T Consensus         7 ~~~~C~~C~~~~~~~~----------dG~~yC~~cG~~   34 (36)
T PF11781_consen    7 PNEPCPVCGSRWFYSD----------DGFYYCDRCGHQ   34 (36)
T ss_pred             CCCcCCCCCCeEeEcc----------CCEEEhhhCceE
Confidence            3456999999854433          479999999975

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=89.66  E-value=0.44  Score=46.38  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-------CCCCCcc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-------PFASSSI  249 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------p~~~~~f  249 (362)
                      .+..+|-+|-|.|.+...+....+..+++++++++.+++.|++.+.-..   ..+..++..|....       .-.+..|
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---~~r~~V~i~dGl~~~~~~~k~~~~~~~~  371 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---SDRNKVHIADGLDFLQRTAKSQQEDICP  371 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---hhhhhhhHhhchHHHHHHhhccccccCC
Confidence            3568899999999999998888777899999999999999998765431   12344444443221       1145678


Q ss_pred             eEEEec----ccccCCCCH------HHHHHHHHhhccCCcEEEEEEEccCC
Q 018003          250 DAVHAG----AAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVDG  290 (362)
Q Consensus       250 D~V~~~----~vl~h~~d~------~~~l~~i~r~LkpgG~li~~~~~~~~  290 (362)
                      |++..-    . .|-+.-|      ..+|..+...|.|.|.+++....++.
T Consensus       372 dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~  421 (482)
T KOG2352|consen  372 DVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNS  421 (482)
T ss_pred             cEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCc
Confidence            988742    2 2333222      26788899999999999988776654

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=89.52  E-value=0.39  Score=46.72  Aligned_cols=105  Identities=23%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCCcceE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDA  251 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~~fD~  251 (362)
                      ++.+|||.=|++|.-+...++.-+ ..++++-|.+++.++..+++++.+  .....++....|+..+    +-....||+
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N--~v~~ive~~~~DA~~lM~~~~~~~~~FDv  186 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN--GVEDIVEPHHSDANVLMYEHPMVAKFFDV  186 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc--CchhhcccccchHHHHHHhccccccccce
Confidence            467899999999988777776633 357999999999999999887765  3344566667776443    333568999


Q ss_pred             EEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       252 V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |-.    .-+..+..+|+...+.++.||.|.++...
T Consensus       187 IDL----DPyGs~s~FLDsAvqav~~gGLL~vT~TD  218 (525)
T KOG1253|consen  187 IDL----DPYGSPSPFLDSAVQAVRDGGLLCVTCTD  218 (525)
T ss_pred             Eec----CCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence            873    44456779999999999999999987543

>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2

Probab=89.41  E-value=0.27  Score=29.67  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=20.1

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      .-||.|+.-|....+.        .....|++|+..+++.
T Consensus         2 ~FCp~C~nlL~p~~~~--------~~~~~C~~C~Y~~~~~   33 (35)
T PF02150_consen    2 RFCPECGNLLYPKEDK--------EKRVACRTCGYEEPIS   33 (35)
T ss_dssp             -BETTTTSBEEEEEET--------TTTEEESSSS-EEE-S
T ss_pred             eeCCCCCccceEcCCC--------ccCcCCCCCCCccCCC
Confidence            3599999987665422        1222899999988763

7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=89.20  E-value=1.8  Score=38.79  Aligned_cols=87  Identities=21%  Similarity=0.211  Sum_probs=66.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++...+|+|+..|.++..|.+++-  .|+++|--+ |.+..-.         ...+.....|-.++.......|-.+|.
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m--~V~aVDng~-ma~sL~d---------tg~v~h~r~DGfk~~P~r~~idWmVCD  277 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNM--RVYAVDNGP-MAQSLMD---------TGQVTHLREDGFKFRPTRSNIDWMVCD  277 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcce--EEEEeccch-hhhhhhc---------ccceeeeeccCcccccCCCCCceEEee
Confidence            4689999999999999999999976  999999765 3332222         567888888887764345678888876


Q ss_pred             ccccCCCCHHHHHHHHHhhccCC
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPG  278 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~Lkpg  278 (362)
                      .|    ..|..+-.-|...|..|
T Consensus       278 mV----EkP~rv~~li~~Wl~nG  296 (358)
T COG2933         278 MV----EKPARVAALIAKWLVNG  296 (358)
T ss_pred             hh----cCcHHHHHHHHHHHHcc
Confidence            65    67888777777777654

>PF14353 CpXC: CpXC protein

Probab=88.99  E-value=0.22  Score=39.93  Aligned_cols=40  Identities=18%  Similarity=0.442  Sum_probs=23.9

Q ss_pred             eeCCCCCCCcccccCCCCccc-------cccC---CceecCccCcccccC
Q 018003           72 LACPICYKPLTWIGDSSLSIE-------SAAG---SSLQCNTCKKTYSGV  111 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~-------~~~~---~~l~C~~C~~~~~~~  111 (362)
                      +.||.|+.++.......++..       .+..   ..+.|++||+.+...
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~   51 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE   51 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence            579999996644432222211       1111   246899999987763

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=88.96  E-value=0.21  Score=31.32  Aligned_cols=32  Identities=19%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      .||.|+..+......       .-....|++|+-++...
T Consensus         1 ~CP~C~~~l~~~~~~-------~~~id~C~~C~G~W~d~   32 (41)
T PF13453_consen    1 KCPRCGTELEPVRLG-------DVEIDVCPSCGGIWFDA   32 (41)
T ss_pred             CcCCCCcccceEEEC-------CEEEEECCCCCeEEccH
Confidence            499999976543311       12466899999877663

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=88.95  E-value=5.6  Score=36.21  Aligned_cols=98  Identities=19%  Similarity=0.147  Sum_probs=59.2

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cC-CCC-C-CCCCc
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI-SRL-P-FASSS  248 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~-~~~-p-~~~~~  248 (362)
                      ...++.+||=+|+|. |..+..+++..-...++++|.++..++.+++.        ... .++.. +. ... . .....
T Consensus       117 ~~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga~-~~i~~~~~~~~~~~~~~~~g  187 (280)
T TIGR03366       117 GDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF--------GAT-ALAEPEVLAERQGGLQNGRG  187 (280)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc--------CCc-EecCchhhHHHHHHHhCCCC
Confidence            344688999999875 66666666653222489999999888877763        111 11111 10 000 0 01235


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +|+|+-.     ...+ ..++...+.|+|+|+++....
T Consensus       188 ~d~vid~-----~G~~-~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       188 VDVALEF-----SGAT-AAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CCEEEEC-----CCCh-HHHHHHHHHhcCCCEEEEecc
Confidence            8888742     2233 457888999999999987653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=88.89  E-value=0.3  Score=30.59  Aligned_cols=24  Identities=29%  Similarity=0.649  Sum_probs=18.4

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccC
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK  105 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~  105 (362)
                      -.||.|+.|+....          .+...|..|+
T Consensus        18 ~~Cp~C~~PL~~~k----------~g~~~Cv~C~   41 (41)
T PF06677_consen   18 EHCPDCGTPLMRDK----------DGKIYCVSCG   41 (41)
T ss_pred             CccCCCCCeeEEec----------CCCEECCCCC
Confidence            45999999998633          2577899985

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=88.86  E-value=2.3  Score=40.44  Aligned_cols=123  Identities=9%  Similarity=0.011  Sum_probs=81.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH------hhcCCCCCCCEEEEEecC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV------QQESNFPKENFLLVRADI  239 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~~~~~~~~~d~  239 (362)
                      +..+.+.+...++....|+|.|.|.....++..+....-+|+++.....+.+..+.      ...-|-....++.+++++
T Consensus       181 l~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf  260 (419)
T KOG3924|consen  181 LRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF  260 (419)
T ss_pred             HHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence            34455666777889999999999999988888765556788887765444443321      111122245678888887


Q ss_pred             CCCCC---CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          240 SRLPF---ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       240 ~~~p~---~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ....+   -....++|+++.+.-- ++...-+.++..-+++|-+++-..+...
T Consensus       261 ~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~L~~  312 (419)
T KOG3924|consen  261 LDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKPLVP  312 (419)
T ss_pred             CCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEeccccccc
Confidence            65321   1235678888776431 3333456799999999999997766554

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=88.85  E-value=5.4  Score=35.42  Aligned_cols=96  Identities=24%  Similarity=0.301  Sum_probs=60.1

Q ss_pred             CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----CCCCCcc
Q 018003          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PFASSSI  249 (362)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p~~~~~f  249 (362)
                      .++.+||..|+|. |..+..+++.. +.++++++.++...+.+++.         ....++...-...     ....+.+
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKEL---------GADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh---------CCceeccCCcCCHHHHHHHhcCCCC
Confidence            5688999999986 66666666553 25899999998877777543         0111111110111     0123569


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |+|+....     .+ ..+..+.+.|+++|.++.....
T Consensus       203 d~vi~~~~-----~~-~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         203 DVVIDAVG-----GP-ETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             CEEEECCC-----CH-HHHHHHHHhcccCCEEEEEccC
Confidence            99985432     21 4577788999999999876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=88.81  E-value=0.26  Score=39.58  Aligned_cols=42  Identities=14%  Similarity=0.343  Sum_probs=28.3

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCcee
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHF  115 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~  115 (362)
                      -+..||.|++.. ....+....   ..+.++|..|+..|....|+.
T Consensus        29 ~~~~cP~C~s~~-~~k~g~~~~---~~qRyrC~~C~~tf~~~~~~~   70 (129)
T COG3677          29 TKVNCPRCKSSN-VVKIGGIRR---GHQRYKCKSCGSTFTVETGSP   70 (129)
T ss_pred             ccCcCCCCCccc-eeeECCccc---cccccccCCcCcceeeeccCc
Confidence            447799999876 222112211   157899999999998866655

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.72  E-value=0.25  Score=28.16  Aligned_cols=22  Identities=23%  Similarity=0.650  Sum_probs=11.0

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCc
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT  103 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~  103 (362)
                      .||.|++++.....         +..++|.+
T Consensus         1 ~CP~C~s~l~~~~~---------ev~~~C~N   22 (28)
T PF03119_consen    1 TCPVCGSKLVREEG---------EVDIRCPN   22 (28)
T ss_dssp             B-TTT--BEEE-CC---------TTCEEE--
T ss_pred             CcCCCCCEeEcCCC---------CEeEECCC
Confidence            49999999875441         24678864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.65  E-value=0.2  Score=31.10  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=18.6

Q ss_pred             eCCCCCCCcccc-cCCCCccccccCCceecCccCccc
Q 018003           73 ACPICYKPLTWI-GDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        73 ~CP~C~~~l~~~-~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      .||.|+..-..- .......++.+...+.|.+|++.+
T Consensus         2 ~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    2 KCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             --SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            699999842111 111222333444578999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=88.46  E-value=0.27  Score=40.46  Aligned_cols=40  Identities=23%  Similarity=0.497  Sum_probs=24.5

Q ss_pred             eeeCCCCCCCcccccCCCCc------cccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~------~~~~~~~~l~C~~C~~~~~~  110 (362)
                      .-+||.|++++.......+.      .-......++|+.||.+|-.
T Consensus        91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW~  136 (147)
T PF01927_consen   91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYWE  136 (147)
T ss_pred             CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEecc
Confidence            46799999977544322110      11111236899999998754

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=88.33  E-value=0.25  Score=26.72  Aligned_cols=21  Identities=24%  Similarity=0.620  Sum_probs=15.6

Q ss_pred             CCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (362)
Q Consensus        74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (362)
                      ||.||..+..             +.-.|+.||.-
T Consensus         2 Cp~CG~~~~~-------------~~~fC~~CG~~   22 (23)
T PF13240_consen    2 CPNCGAEIED-------------DAKFCPNCGTP   22 (23)
T ss_pred             CcccCCCCCC-------------cCcchhhhCCc
Confidence            9999988653             34569999863

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=88.23  E-value=0.99  Score=41.62  Aligned_cols=110  Identities=11%  Similarity=0.092  Sum_probs=71.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhC--------------------CCCEEEEEeCCH--HHHHHHHHHHhhcC----------
Q 018003          178 GGNIIDASCGSGLFSRIFAKSG--------------------LFSLVVALDYSE--NMLKQCYEFVQQES----------  225 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~--------------------~~~~v~gvD~s~--~~~~~a~~~~~~~~----------  225 (362)
                      ..+||-||.|.|.=..+++...                    +...++.+|+.+  ..+......+....          
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            3699999999986544444321                    114899999876  33443333332220          


Q ss_pred             ----CCCCCCEEEEEecCCCCCCCC-------CcceEEEecccccCC-----CCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          226 ----NFPKENFLLVRADISRLPFAS-------SSIDAVHAGAAIHCW-----SSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       226 ----~~~~~~~~~~~~d~~~~p~~~-------~~fD~V~~~~vl~h~-----~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                          ....-++.|.+.|+..+..++       ...|+|+..+.+.-+     ..-.++|..+...++||-.|++.+..
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSp  244 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSP  244 (315)
T ss_pred             cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCC
Confidence                112346788899987765321       257888888876433     34458999999999999999887643

>PF04606 Ogr_Delta: Ogr/Delta-like zinc finger; InterPro: IPR007684 This entry is represented by Bacteriophage P2, Ogr

Probab=87.87  E-value=0.23  Score=32.16  Aligned_cols=39  Identities=21%  Similarity=0.318  Sum_probs=25.4

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCc--cCcccccCC
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNT--CKKTYSGVG  112 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~--C~~~~~~~~  112 (362)
                      .||.||++......... .....+...+|.+  ||+.|....
T Consensus         1 ~CP~Cg~~a~ir~S~~~-s~~~~~~Y~qC~N~~Cg~tfv~~~   41 (47)
T PF04606_consen    1 RCPHCGSKARIRTSRQL-SPLTRELYCQCTNPECGHTFVANL   41 (47)
T ss_pred             CcCCCCCeeEEEEchhh-CcceEEEEEEECCCcCCCEEEEEE
Confidence            49999997655432222 3334445779988  999887743

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes []. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F [].; GO: 0006355 regulation of transcription, DNA-dependent

>PLN02740 Alcohol dehydrogenase-like

Probab=87.79  E-value=8.1  Score=36.94  Aligned_cols=98  Identities=15%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC--C-----CC
Q 018003          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--L-----PF  244 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~-----p~  244 (362)
                      ....++.+||=+|+|. |..+..+++......|+++|.+++.++.+++.        .. -.++...-.+  +     ..
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~--------Ga-~~~i~~~~~~~~~~~~v~~~  264 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEM--------GI-TDFINPKDSDKPVHERIREM  264 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHc--------CC-cEEEecccccchHHHHHHHH
Confidence            3456788999999875 66666666653222699999999988888652        11 1122111000  0     01


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  285 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~  285 (362)
                      ..+.+|+|+-     ....+ ..+....+.+++| |++++..
T Consensus       265 ~~~g~dvvid-----~~G~~-~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        265 TGGGVDYSFE-----CAGNV-EVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             hCCCCCEEEE-----CCCCh-HHHHHHHHhhhcCCCEEEEEc
Confidence            1225888874     33333 4577778889997 9887654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=87.77  E-value=14  Score=34.51  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC---CC-CC-
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS---RL-PF-  244 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~-p~-  244 (362)
                      .....++.+||=+|+|. |..+..+++.. +.+ +++++.+++..+.+++.        .. -.++...-.   .+ .. 
T Consensus       158 ~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~~--------ga-~~~i~~~~~~~~~~~~~~  227 (339)
T cd08239         158 RVGVSGRDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKAL--------GA-DFVINSGQDDVQEIRELT  227 (339)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--------CC-CEEEcCCcchHHHHHHHh
Confidence            34555688999998864 66666666653 235 99999999888887653        11 111111100   01 01 


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ....+|+|+-.-     ..+ ..+....+.|+++|++++...
T Consensus       228 ~~~~~d~vid~~-----g~~-~~~~~~~~~l~~~G~~v~~g~  263 (339)
T cd08239         228 SGAGADVAIECS-----GNT-AARRLALEAVRPWGRLVLVGE  263 (339)
T ss_pred             CCCCCCEEEECC-----CCH-HHHHHHHHHhhcCCEEEEEcC
Confidence            123689887432     222 346777889999999987643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=87.69  E-value=7.8  Score=36.12  Aligned_cols=94  Identities=20%  Similarity=0.273  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec---CCCCCCCCCcceEE
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISRLPFASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~~p~~~~~fD~V  252 (362)
                      ++.+||-.|+|. |..+..+++......+++++.++...+.+++. .      .  -.++..+   +..+....+.+|+|
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~-g------~--~~vi~~~~~~~~~~~~~~~~vd~v  235 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAM-G------A--DETVNLARDPLAAYAADKGDFDVV  235 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-C------C--CEEEcCCchhhhhhhccCCCccEE
Confidence            688999888875 66666666653212689999998887766552 1      1  1122111   11121122358998


Q ss_pred             EecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +....     . ...++++.+.|+++|+++...
T Consensus       236 ld~~g-----~-~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         236 FEASG-----A-PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             EECCC-----C-HHHHHHHHHHHhcCCEEEEEe
Confidence            85432     1 235788899999999998654

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=87.65  E-value=0.55  Score=27.91  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=22.5

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      .-.|+.|+++.....         ..+.+.|..|+..++
T Consensus         3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP   32 (33)
T ss_pred             ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence            457999999876522         136899999998875

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=87.61  E-value=0.29  Score=27.34  Aligned_cols=23  Identities=22%  Similarity=0.541  Sum_probs=16.8

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~  106 (362)
                      ...||.||..+..             +.-.|++||.
T Consensus         2 ~~~Cp~Cg~~~~~-------------~~~fC~~CG~   24 (26)
T PF13248_consen    2 EMFCPNCGAEIDP-------------DAKFCPNCGA   24 (26)
T ss_pred             cCCCcccCCcCCc-------------ccccChhhCC
Confidence            3579999985432             4678999986

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=87.31  E-value=1.9  Score=40.78  Aligned_cols=42  Identities=19%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~  219 (362)
                      +-..++|+|.|.|++++.+.-. .+..|++||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~-y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLG-YGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhc-cCceEEEeccchHHHHHHHH
Confidence            3468999999999999988764 34699999999877766654

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=87.29  E-value=0.36  Score=38.02  Aligned_cols=31  Identities=6%  Similarity=0.029  Sum_probs=23.6

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....||.||..|.--.          .....|+.||..|+.
T Consensus         8 tKr~Cp~cg~kFYDLn----------k~p~vcP~cg~~~~~   38 (129)
T TIGR02300         8 TKRICPNTGSKFYDLN----------RRPAVSPYTGEQFPP   38 (129)
T ss_pred             ccccCCCcCccccccC----------CCCccCCCcCCccCc
Confidence            4567999999875321          257899999999876

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=87.22  E-value=0.28  Score=41.47  Aligned_cols=37  Identities=14%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      .+.||.|++.-..+.  -+.. ...+-.++|.+||.+++.
T Consensus         6 y~~Cp~Cg~eev~hE--Vik~-~g~~~lvrC~eCG~V~~~   42 (201)
T COG1326           6 YIECPSCGSEEVSHE--VIKE-RGREPLVRCEECGTVHPA   42 (201)
T ss_pred             EEECCCCCcchhhHH--HHHh-cCCceEEEccCCCcEeec
Confidence            478999994322111  0000 012247899999999965

>PRK11524 putative methyltransferase; Provisional

Probab=86.99  E-value=0.52  Score=43.34  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=38.0

Q ss_pred             CCEEEEEecCCCC--CCCCCcceEEEeccccc----------CC------CCHHHHHHHHHhhccCCcEEEEEE
Q 018003          230 ENFLLVRADISRL--PFASSSIDAVHAGAAIH----------CW------SSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       230 ~~~~~~~~d~~~~--p~~~~~fD~V~~~~vl~----------h~------~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+..++++|..+.  .+++++||+|++.--..          .+      .-....+.++.++|||||.+++..
T Consensus         7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~   80 (284)
T PRK11524          7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN   80 (284)
T ss_pred             CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            3456788887663  35678899999852210          00      001368899999999999999863

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=86.98  E-value=0.49  Score=27.89  Aligned_cols=27  Identities=19%  Similarity=0.528  Sum_probs=18.1

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      +.|..|+.......          ...++|+.||+-.
T Consensus         1 Y~C~~Cg~~~~~~~----------~~~irC~~CG~RI   27 (32)
T PF03604_consen    1 YICGECGAEVELKP----------GDPIRCPECGHRI   27 (32)
T ss_dssp             EBESSSSSSE-BST----------SSTSSBSSSS-SE
T ss_pred             CCCCcCCCeeEcCC----------CCcEECCcCCCeE
Confidence            36899998766433          2468999999754

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=86.56  E-value=0.42  Score=29.79  Aligned_cols=36  Identities=17%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             eCCCCCCCccc-ccCCCCccccccCCceecCccCccc
Q 018003           73 ACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        73 ~CP~C~~~l~~-~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      .||.|+..-.. ......+.++.+.-.+.|.+|++.+
T Consensus         2 ~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w   38 (40)
T smart00440        2 PCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW   38 (40)
T ss_pred             cCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence            69999984211 0111222333444578999999865

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=86.48  E-value=2.9  Score=37.54  Aligned_cols=110  Identities=19%  Similarity=0.234  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEcCccchHHHHHHH---h-C-CCCEEEEEeCCH--------------------------HHHHHHHHHHhh
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAK---S-G-LFSLVVALDYSE--------------------------NMLKQCYEFVQQ  223 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~---~-~-~~~~v~gvD~s~--------------------------~~~~~a~~~~~~  223 (362)
                      ..-.+.|+|.||-.|..+..++.   . + .+.++++.|--+                          ..++..++++.+
T Consensus        72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            33467999999999976544432   1 1 334688887321                          123334444433


Q ss_pred             cCCCCCCCEEEEEecCCC-CC-CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          224 ESNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       224 ~~~~~~~~~~~~~~d~~~-~p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      . +....++.++.|.+.+ +| .+...+-++..-.=++  ..-..+|..+...|.|||++++-+++
T Consensus       152 ~-gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~  214 (248)
T PF05711_consen  152 Y-GLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG  214 (248)
T ss_dssp             T-TTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             c-CCCcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence            3 2234689999999843 33 2233333333221111  12357899999999999999986543

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>KOG2906 consensus RNA polymerase III subunit C11 [Transcription]

Probab=85.97  E-value=0.39  Score=35.77  Aligned_cols=34  Identities=26%  Similarity=0.517  Sum_probs=26.0

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      ++-||.||.-|......+       -..+.|+.|..++++.
T Consensus         1 m~FCP~Cgn~Live~g~~-------~~rf~C~tCpY~~~I~   34 (105)
T KOG2906|consen    1 MLFCPTCGNMLIVESGES-------CNRFSCRTCPYVFPIS   34 (105)
T ss_pred             CcccCCCCCEEEEecCCe-------EeeEEcCCCCceeeEe
Confidence            467999999887655221       3578999999999985

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=85.77  E-value=0.83  Score=27.73  Aligned_cols=32  Identities=16%  Similarity=0.462  Sum_probs=18.8

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccC
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK  105 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~  105 (362)
                      .+.||.|++.......+..   ......++|..|+
T Consensus         5 ~v~CP~C~s~~~v~k~G~~---~~G~qryrC~~C~   36 (36)
T PF03811_consen    5 DVHCPRCQSTEGVKKNGKS---PSGHQRYRCKDCR   36 (36)
T ss_pred             eeeCCCCCCCCcceeCCCC---CCCCEeEecCcCC
Confidence            3679999996622221111   1123578999985

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=85.69  E-value=0.71  Score=25.20  Aligned_cols=23  Identities=22%  Similarity=0.664  Sum_probs=13.7

Q ss_pred             CCCCCCCcccccCCCCccccccCCceecCccC
Q 018003           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCK  105 (362)
Q Consensus        74 CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~  105 (362)
                      |-.|+.++....         ....+.|++||
T Consensus         1 C~sC~~~i~~r~---------~~v~f~CPnCG   23 (24)
T PF07754_consen    1 CTSCGRPIAPRE---------QAVPFPCPNCG   23 (24)
T ss_pred             CccCCCcccCcc---------cCceEeCCCCC
Confidence            556766654322         12567888887

It is likely to bind zinc via its four well-conserved cysteine residues.

>PHA02768 hypothetical protein; Provisional

Probab=85.55  E-value=0.31  Score=32.60  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=26.8

Q ss_pred             eeeCCCCCCCcccccCCCCccccccC-CceecCccCcccccCCcee
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAG-SSLQCNTCKKTYSGVGTHF  115 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~-~~l~C~~C~~~~~~~~g~~  115 (362)
                      -+.||.||..+....  .....+... ..+.|.+|+..|.....++
T Consensus         5 ~y~C~~CGK~Fs~~~--~L~~H~r~H~k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRK--SMITHLRKHNTNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHH--HHHHHHHhcCCcccCCcccceecccceeE
Confidence            468999999765443  111111222 2779999999887654444

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.48  E-value=1  Score=43.14  Aligned_cols=61  Identities=15%  Similarity=0.216  Sum_probs=0.0

Q ss_pred             HHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEE
Q 018003          219 EFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~  283 (362)
                      +.++..    .+++.++.+++.+.-  .+++++|.++....++++++..  +.++++.+.++|||+++.
T Consensus       268 ~~lr~~----~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~  332 (380)
T PF11899_consen  268 EALRAR----LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLW  332 (380)
T ss_pred             HHHhcC----CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEE

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=85.44  E-value=3.5  Score=37.33  Aligned_cols=66  Identities=21%  Similarity=0.217  Sum_probs=44.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ..+...++|+|||.|.++.+++...     ....++.||-...-. .+..++...  .....+.-+..|+.++.
T Consensus        16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~--~~~~~~~R~riDI~dl~   86 (259)
T PF05206_consen   16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD--ESEPKFERLRIDIKDLD   86 (259)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc--CCCCceEEEEEEeeccc
Confidence            3456799999999999999998875     445899999865333 333333333  00135667777777654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=85.29  E-value=0.41  Score=40.74  Aligned_cols=35  Identities=20%  Similarity=0.477  Sum_probs=25.8

Q ss_pred             ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (362)
Q Consensus        65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (362)
                      .......+.||.|+..+.+..        .....+.|+.||..
T Consensus       111 ~e~~~~~Y~Cp~C~~rytf~e--------A~~~~F~Cp~Cg~~  145 (178)
T PRK06266        111 EEENNMFFFCPNCHIRFTFDE--------AMEYGFRCPQCGEM  145 (178)
T ss_pred             hccCCCEEECCCCCcEEeHHH--------HhhcCCcCCCCCCC
Confidence            344557899999998776543        23458999999964

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=85.29  E-value=12  Score=35.16  Aligned_cols=105  Identities=16%  Similarity=0.156  Sum_probs=67.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec----CCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD----ISR  241 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d----~~~  241 (362)
                      ....+-.+.++|.++.-+|||. |.....-++..-...++++|+++.-++.|++.         .-.+++...    +.+
T Consensus       175 Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f---------GAT~~vn~~~~~~vv~  245 (366)
T COG1062         175 GAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF---------GATHFVNPKEVDDVVE  245 (366)
T ss_pred             HHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc---------CCceeecchhhhhHHH
Confidence            3455556677899999999986 65555544443345899999999999999984         333343331    110


Q ss_pred             --CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          242 --LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       242 --~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        ...-++..|.+     ++...+.. .++.....+.++|..++.-.
T Consensus       246 ~i~~~T~gG~d~~-----~e~~G~~~-~~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         246 AIVELTDGGADYA-----FECVGNVE-VMRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             HHHHhcCCCCCEE-----EEccCCHH-HHHHHHHHHhcCCeEEEEec
Confidence              01223345655     34444554 67888888888999887644

>smart00531 TFIIE Transcription initiation factor IIE

Probab=85.13  E-value=0.44  Score=39.22  Aligned_cols=39  Identities=21%  Similarity=0.612  Sum_probs=25.1

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      ..-..+.||.|+..+........ .+  ..+.+.|+.||..-
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~ea~~~-~d--~~~~f~Cp~Cg~~l  133 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFLEANQL-LD--MDGTFTCPRCGEEL  133 (147)
T ss_pred             cCCcEEECcCCCCEeeHHHHHHh-cC--CCCcEECCCCCCEE
Confidence            34567999999987665331111 11  24569999999754

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=85.02  E-value=0.52  Score=34.94  Aligned_cols=32  Identities=28%  Similarity=0.638  Sum_probs=22.0

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.||.|+..-...         ...++|.|..|+..+..
T Consensus        34 ~ky~Cp~Cgk~~vkR---------~a~GIW~C~~C~~~~AG   65 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKR---------VATGIWKCKKCGKKFAG   65 (90)
T ss_dssp             S-BEESSSSSSEEEE---------EETTEEEETTTTEEEE-
T ss_pred             CCCcCCCCCCceeEE---------eeeEEeecCCCCCEEeC
Confidence            458899999854221         23479999999987665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=84.87  E-value=19  Score=31.35  Aligned_cols=103  Identities=21%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C-----
Q 018003          178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  244 (362)
Q Consensus       178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~-----  244 (362)
                      +++||-.|++.|.   +...+.+.|.  +|++++-+++..+...+.+...     .++.++.+|+.+..     +     
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~   77 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNENKLKRMKKTLSKY-----GNIHYVVGDVSSTESARNVIEKAAK   77 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-----CCeEEEECCCCCHHHHHHHHHHHHH
Confidence            5689999986432   2334444555  9999999887666554443322     36788889987532     0     


Q ss_pred             CCCcceEEEecccccCCC-----------------CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 ASSSIDAVHAGAAIHCWS-----------------SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~-----------------d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .-+.+|.++.........                 -+..+++.+.+.++++|.+++....
T Consensus        78 ~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         78 VLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             HhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            013468777655421110                 1123466666777888887776543

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=84.77  E-value=0.4  Score=39.94  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=25.9

Q ss_pred             ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcc
Q 018003           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (362)
Q Consensus        65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~  107 (362)
                      ....-..+.||.|+..+.+..        .....+.|+.||..
T Consensus       103 ~e~~~~~Y~Cp~c~~r~tf~e--------A~~~~F~Cp~Cg~~  137 (158)
T TIGR00373       103 FETNNMFFICPNMCVRFTFNE--------AMELNFTCPRCGAM  137 (158)
T ss_pred             hccCCCeEECCCCCcEeeHHH--------HHHcCCcCCCCCCE
Confidence            445567899999998776544        23357999999975

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=84.59  E-value=14  Score=35.64  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe---cCCC-CC--CC
Q 018003          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DISR-LP--FA  245 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~~-~p--~~  245 (362)
                      ....++.+||=.|+|. |..+..+++..-...++.+|.+++.++.+++.        ... .+...   +... +.  ..
T Consensus       181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~--------Ga~-~v~~~~~~~~~~~v~~~~~  251 (393)
T TIGR02819       181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSF--------GCE-TVDLSKDATLPEQIEQILG  251 (393)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHc--------CCe-EEecCCcccHHHHHHHHcC
Confidence            3445678888788875 66666666653223466778888888888763        111 11111   1100 00  11


Q ss_pred             CCcceEEEecccccC--------CCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          246 SSSIDAVHAGAAIHC--------WSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h--------~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ...+|+|+-.-.-..        ..++...+++..+++++||++++.-.
T Consensus       252 ~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~  300 (393)
T TIGR02819       252 EPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL  300 (393)
T ss_pred             CCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence            235888874332110        01223579999999999999988654

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=84.42  E-value=7.8  Score=37.62  Aligned_cols=98  Identities=10%  Similarity=0.030  Sum_probs=61.1

Q ss_pred             HHHHhhcCC-CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          167 ELMKGYLKP-VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       167 ~~l~~~l~~-~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      +.+.+.... .+|.+|+=+|+|. |......++. .+.+|+.+|.++..++.|++.          .....  +..+.  
T Consensus       190 ~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~-~Ga~ViV~d~d~~R~~~A~~~----------G~~~~--~~~e~--  254 (413)
T cd00401         190 DGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRG-QGARVIVTEVDPICALQAAME----------GYEVM--TMEEA--  254 (413)
T ss_pred             HHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEECChhhHHHHHhc----------CCEEc--cHHHH--
Confidence            444544432 4688999999997 6655555443 234899999999887777652          12221  11111  


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       -...|+|+..-     ..+..+-.+..+.+|+||+++...
T Consensus       255 -v~~aDVVI~at-----G~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         255 -VKEGDIFVTTT-----GNKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             -HcCCCEEEECC-----CCHHHHHHHHHhcCCCCcEEEEeC
Confidence             13479888542     334433344589999999998765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=84.35  E-value=0.79  Score=30.29  Aligned_cols=36  Identities=22%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +.||+||..-....   ..+..+..=.+.|+.|...-.+
T Consensus         5 i~CP~CgnKTR~ki---r~DT~LkNfPlyCpKCK~EtlI   40 (55)
T PF14205_consen    5 ILCPICGNKTRLKI---REDTVLKNFPLYCPKCKQETLI   40 (55)
T ss_pred             EECCCCCCccceee---ecCceeccccccCCCCCceEEE
Confidence            67999997432221   1122223346899999986655

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.32  E-value=0.67  Score=28.72  Aligned_cols=31  Identities=13%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~  106 (362)
                      -.+.||.|+..+......      .......|+.||.
T Consensus         4 Y~y~C~~Cg~~fe~~~~~------~~~~~~~CP~Cg~   34 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI------SDDPLATCPECGG   34 (41)
T ss_pred             EEEEcCCCCCEEEEEEec------CCCCCCCCCCCCC
Confidence            457899999976543311      1135788999997

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=84.27  E-value=4  Score=37.74  Aligned_cols=98  Identities=22%  Similarity=0.238  Sum_probs=71.6

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      ++.+|.-+|.|. |.....++- +-+..|+-+|+|.+.+++....+       ..++.........+.-.-.+.|+|+..
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~-glgA~Vtild~n~~rl~~ldd~f-------~~rv~~~~st~~~iee~v~~aDlvIga  238 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAI-GLGADVTILDLNIDRLRQLDDLF-------GGRVHTLYSTPSNIEEAVKKADLVIGA  238 (371)
T ss_pred             CCccEEEECCccccchHHHHHh-ccCCeeEEEecCHHHHhhhhHhh-------CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence            346788899886 666655544 34569999999998888877654       234566555554443233468999877


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      -.+---..|.-..+++.+.+|||++++
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCCcEEE
Confidence            666666789999999999999999887

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=84.24  E-value=8.6  Score=36.48  Aligned_cols=95  Identities=15%  Similarity=0.104  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCCCCCCcceEEE
Q 018003          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPFASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p~~~~~fD~V~  253 (362)
                      .++.+||-.|+|. |.++..+++.. +.++++++.+++....+.+.+.       . ..++. .+...+.-..+.+|+|+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~~~~~~~~~~~~~~G-------a-~~vi~~~~~~~~~~~~~~~D~vi  252 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF-GLKVTVISSSSNKEDEAINRLG-------A-DSFLVSTDPEKMKAAIGTMDYII  252 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCcchhhhHHHhCC-------C-cEEEcCCCHHHHHhhcCCCCEEE
Confidence            4678888899875 76766666653 3478888887654333322211       1 11111 01001110112478777


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      -     ....+ ..+.+..+.|++||+++...
T Consensus       253 d-----~~g~~-~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        253 D-----TVSAV-HALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             E-----CCCCH-HHHHHHHHHhcCCcEEEEeC
Confidence            3     33333 35788899999999998764

>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]

Probab=84.00  E-value=0.57  Score=38.06  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             eeCCCCCCCcccccCCCCc-cccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +.||.|+++-....++... ++......-.|++||.-|..
T Consensus         1 M~CPfC~~~~tkViDSR~~edg~aIRRRReC~~C~~RFTT   40 (156)
T COG1327           1 MKCPFCGHEDTKVIDSRPAEEGNAIRRRRECLECGERFTT   40 (156)
T ss_pred             CCCCCCCCCCCeeeecccccccchhhhhhcccccccccch
Confidence            4699999965543333332 33344456689999988766

>PRK14892 putative transcription elongation factor Elf1; Provisional

Probab=83.88  E-value=1.1  Score=34.01  Aligned_cols=40  Identities=15%  Similarity=0.309  Sum_probs=25.1

Q ss_pred             ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +.+....+.||.|+.. ....  ..  +. ......|++||..+..
T Consensus        15 k~klpt~f~CP~Cge~-~v~v--~~--~k-~~~h~~C~~CG~y~~~   54 (99)
T PRK14892         15 KPKLPKIFECPRCGKV-SISV--KI--KK-NIAIITCGNCGLYTEF   54 (99)
T ss_pred             ccCCCcEeECCCCCCe-Eeee--ec--CC-CcceEECCCCCCccCE
Confidence            4455578999999953 2210  00  00 2467899999987665

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=83.74  E-value=0.66  Score=40.34  Aligned_cols=92  Identities=15%  Similarity=0.121  Sum_probs=66.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--  242 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--  242 (362)
                      ....+.+++.+.+++..+|.--|.|..+..+.++.+...++++|-+|-+-+.|+......   ..+.+..+.+.+..+  
T Consensus        31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el---~~~~l~a~Lg~Fs~~~~  107 (303)
T KOG2782|consen   31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDEL---MHPTLKAVLGNFSYIKS  107 (303)
T ss_pred             ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhh---cchhHHHHHhhhHHHHH
Confidence            356778899999999999999999999999999988888999999998877777654322   122333333443332  


Q ss_pred             -----CCCCCcceEEEeccccc
Q 018003          243 -----PFASSSIDAVHAGAAIH  259 (362)
Q Consensus       243 -----p~~~~~fD~V~~~~vl~  259 (362)
                           .+.+.++|-|++.....
T Consensus       108 l~~~~gl~~~~vDGiLmDlGcS  129 (303)
T KOG2782|consen  108 LIADTGLLDVGVDGILMDLGCS  129 (303)
T ss_pred             HHHHhCCCcCCcceEEeecCcc
Confidence                 24577889888765543

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=83.73  E-value=1.3  Score=29.69  Aligned_cols=34  Identities=21%  Similarity=0.406  Sum_probs=26.4

Q ss_pred             cccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      ......+.|-.|++...+..          ...++|..||+-..
T Consensus        15 r~~~miYiCgdC~~en~lk~----------~D~irCReCG~RIl   48 (62)
T KOG3507|consen   15 RTATMIYICGDCGQENTLKR----------GDVIRCRECGYRIL   48 (62)
T ss_pred             CcccEEEEeccccccccccC----------CCcEehhhcchHHH
Confidence            55778899999999876654          24899999997543

0 [Transcription]

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=83.59  E-value=20  Score=33.42  Aligned_cols=133  Identities=11%  Similarity=0.092  Sum_probs=68.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHH-HHHHHHHhhcCCCCCCCEEEEEe-cCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENML-KQCYEFVQQESNFPKENFLLVRA-DISRLP  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~-~~a~~~~~~~~~~~~~~~~~~~~-d~~~~p  243 (362)
                      +.....++..++.+|+-+|+|. |..............++.+|.+++.. +.+++.         . ...+.. +.... 
T Consensus       167 ~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~---------g-~~~~~~~~~~~~-  235 (311)
T cd05213         167 ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL---------G-GNAVPLDELLEL-  235 (311)
T ss_pred             HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc---------C-CeEEeHHHHHHH-
Confidence            3334444444688999999986 55443333331124899999997654 344431         1 122221 11111 


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                        -...|+|+..-.-.+   +...+..+.+..+.+|.+++-..++..   ..+....          . + ....++.++
T Consensus       236 --l~~aDvVi~at~~~~---~~~~~~~~~~~~~~~~~~viDlavPrd---i~~~v~~----------l-~-~v~l~~vDd  295 (311)
T cd05213         236 --LNEADVVISATGAPH---YAKIVERAMKKRSGKPRLIVDLAVPRD---IEPEVGE----------L-E-GVRLYTIDD  295 (311)
T ss_pred             --HhcCCEEEECCCCCc---hHHHHHHHHhhCCCCCeEEEEeCCCCC---Cchhhcc----------C-C-CcEEEEHHH
Confidence              134799998765443   233344444333335666665544332   1121111          0 1 355678888


Q ss_pred             HHHHHHH
Q 018003          324 LKRIFRQ  330 (362)
Q Consensus       324 l~~ll~~  330 (362)
                      |+.+.++
T Consensus       296 l~~~~~~  302 (311)
T cd05213         296 LEEVVEE  302 (311)
T ss_pred             hHHHHHH
Confidence            8877664

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=83.05  E-value=0.61  Score=35.25  Aligned_cols=28  Identities=32%  Similarity=0.840  Sum_probs=21.3

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....||+|+..+..             ..++|++|+..-..
T Consensus         5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTVrg   32 (122)
T COG3877           5 VINRCPVCGRKLIV-------------TELKCSNCETTVRG   32 (122)
T ss_pred             CCCCCCccccccee-------------EEEecCCCCceEec
Confidence            35679999987665             46999999976443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=82.98  E-value=14  Score=28.29  Aligned_cols=86  Identities=19%  Similarity=0.098  Sum_probs=53.4

Q ss_pred             CccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceEEEeccccc
Q 018003          186 CGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAGAAIH  259 (362)
Q Consensus       186 cG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~V~~~~vl~  259 (362)
                      ||.|.++..+++..  ....++.+|.+++.++.+++.          .+.++.+|..+..    ..-...|.|++..-  
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~--   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----------GVEVIYGDATDPEVLERAGIEKADAVVILTD--   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----------TSEEEES-TTSHHHHHHTTGGCESEEEEESS--
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----------ccccccccchhhhHHhhcCccccCEEEEccC--
Confidence            44455555554431  123899999999998888763          4779999997642    12345777776442  


Q ss_pred             CCCCHH--HHHHHHHhhccCCcEEEEEEE
Q 018003          260 CWSSPS--TGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       260 h~~d~~--~~l~~i~r~LkpgG~li~~~~  286 (362)
                         +..  ..+....+-+.|...++....
T Consensus        72 ---~d~~n~~~~~~~r~~~~~~~ii~~~~   97 (116)
T PF02254_consen   72 ---DDEENLLIALLARELNPDIRIIARVN   97 (116)
T ss_dssp             ---SHHHHHHHHHHHHHHTTTSEEEEEES
T ss_pred             ---CHHHHHHHHHHHHHHCCCCeEEEEEC
Confidence               333  344555667778877776553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12495 hypothetical protein; Provisional

Probab=82.77  E-value=0.75  Score=39.84  Aligned_cols=33  Identities=18%  Similarity=0.406  Sum_probs=25.0

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      .......|+.||.|+...           .+..+|+.|+..+-.
T Consensus        38 atmsa~hC~~CG~PIpa~-----------pG~~~Cp~CQ~~~~~   70 (226)
T PRK12495         38 ATMTNAHCDECGDPIFRH-----------DGQEFCPTCQQPVTE   70 (226)
T ss_pred             cccchhhcccccCcccCC-----------CCeeECCCCCCcccc
Confidence            344556799999998732           378999999987654

>TIGR01384 TFS_arch transcription factor S, archaeal

Probab=82.64  E-value=0.82  Score=35.10  Aligned_cols=27  Identities=22%  Similarity=0.418  Sum_probs=21.3

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      -||.||..|....           +.+.|+.|+..+..
T Consensus         2 fC~~Cg~~l~~~~-----------~~~~C~~C~~~~~~   28 (104)
T TIGR01384         2 FCPKCGSLMTPKN-----------GVYVCPSCGYEKEK   28 (104)
T ss_pred             CCcccCcccccCC-----------CeEECcCCCCcccc
Confidence            5999999886532           58999999987654

There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=82.49  E-value=0.81  Score=38.69  Aligned_cols=28  Identities=32%  Similarity=0.665  Sum_probs=22.6

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      -.|+.|+++|...+           ..+.|++||..-..
T Consensus       150 A~CsrC~~~L~~~~-----------~~l~Cp~Cg~tEkR  177 (188)
T COG1096         150 ARCSRCRAPLVKKG-----------NMLKCPNCGNTEKR  177 (188)
T ss_pred             EEccCCCcceEEcC-----------cEEECCCCCCEEee
Confidence            45999999998744           68999999986544

>PLN02827 Alcohol dehydrogenase-like

Probab=82.45  E-value=19  Score=34.34  Aligned_cols=96  Identities=15%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-----cCCC-C-CCC
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-----DISR-L-PFA  245 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-----d~~~-~-p~~  245 (362)
                      ...++.+||-.|+|. |.++..+++..-...++++|.+++..+.+++.        ... .++..     +... + ...
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~l--------Ga~-~~i~~~~~~~~~~~~v~~~~  260 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTF--------GVT-DFINPNDLSEPIQQVIKRMT  260 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc--------CCc-EEEcccccchHHHHHHHHHh
Confidence            445688999999875 66666666653223588999999888877652        111 11111     1000 0 011


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGT  284 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~  284 (362)
                      .+.+|+|+-.     ...+ ..+....++|++| |++++.
T Consensus       261 ~~g~d~vid~-----~G~~-~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        261 GGGADYSFEC-----VGDT-GIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             CCCCCEEEEC-----CCCh-HHHHHHHHhhccCCCEEEEE
Confidence            2258888742     2233 3577788899998 999864

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=82.36  E-value=0.95  Score=26.82  Aligned_cols=24  Identities=21%  Similarity=0.522  Sum_probs=16.3

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~  106 (362)
                      ..|++||.......           ..+.|+.||.
T Consensus         2 ~~C~~CGy~y~~~~-----------~~~~CP~Cg~   25 (33)
T cd00350           2 YVCPVCGYIYDGEE-----------APWVCPVCGA   25 (33)
T ss_pred             EECCCCCCEECCCc-----------CCCcCcCCCC
Confidence            57999986543221           4678999985

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=82.28  E-value=0.97  Score=39.70  Aligned_cols=41  Identities=15%  Similarity=0.281  Sum_probs=22.6

Q ss_pred             CeeeCCCCCCCccccc----CCC------------CccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIG----DSS------------LSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~----~~~------------~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....||+|+..+....    ...            ...+...-....||+||..+..
T Consensus         4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~   60 (214)
T PF09986_consen    4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFE   60 (214)
T ss_pred             CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCcccc
Confidence            3478999999553321    000            0122222235689999976554

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=82.18  E-value=23  Score=33.56  Aligned_cols=101  Identities=15%  Similarity=0.123  Sum_probs=60.3

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec----CCC-C-CC
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD----ISR-L-PF  244 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d----~~~-~-p~  244 (362)
                      .....++.+||=.|+|. |..+..+++..-..+|+++|.+++.++.+++.        .....+...+    +.. + ..
T Consensus       180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~--------Ga~~~i~~~~~~~~~~~~v~~~  251 (368)
T TIGR02818       180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL--------GATDCVNPNDYDKPIQEVIVEI  251 (368)
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCCeEEcccccchhHHHHHHHH
Confidence            34456688999999875 66666666653223799999999988888653        1111111111    000 0 01


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  286 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~~  286 (362)
                      ..+.+|+|+-     ....+ ..+.+..+.+++| |++++...
T Consensus       252 ~~~g~d~vid-----~~G~~-~~~~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       252 TDGGVDYSFE-----CIGNV-NVMRAALECCHKGWGESIIIGV  288 (368)
T ss_pred             hCCCCCEEEE-----CCCCH-HHHHHHHHHhhcCCCeEEEEec
Confidence            1235788764     33333 3577788899886 99886643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR00244 transcriptional regulator NrdR

Probab=82.10  E-value=0.82  Score=37.16  Aligned_cols=39  Identities=23%  Similarity=0.503  Sum_probs=24.7

Q ss_pred             eeCCCCCCCcccccCCCCc-cccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLS-IESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~-~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +.||.|+.+-....++... ++......-.|.+||.-|..
T Consensus         1 M~CP~C~~~dtkViDSR~~~dg~~IRRRReC~~C~~RFTT   40 (147)
T TIGR00244         1 MHCPFCQHHNTRVLDSRLVEDGQSIRRRRECLECHERFTT   40 (147)
T ss_pred             CCCCCCCCCCCEeeeccccCCCCeeeecccCCccCCccce
Confidence            4799999965443333332 23333445679999988766

Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.

>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]

Probab=82.03  E-value=0.88  Score=29.40  Aligned_cols=26  Identities=23%  Similarity=0.392  Sum_probs=17.6

Q ss_pred             eCCCCCC-CcccccCCCCccccccCCceecCccCccc
Q 018003           73 ACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        73 ~CP~C~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      .||.||. .+....          ...+.|..||...
T Consensus        21 ~CPrCG~gvfmA~H----------~dR~~CGkCgyTe   47 (51)
T COG1998          21 FCPRCGPGVFMADH----------KDRWACGKCGYTE   47 (51)
T ss_pred             cCCCCCCcchhhhc----------CceeEeccccceE
Confidence            4999995 332222          1489999999754

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=81.98  E-value=4.2  Score=35.54  Aligned_cols=72  Identities=7%  Similarity=0.150  Sum_probs=50.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      .+.+.+..+.-...-|.+||.|.|..++.+...+. .+...+|.+...+.-.+...+..    ..+..++.+|+...
T Consensus        39 T~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~-~RL~vVE~D~RFip~LQ~L~EAa----~~~~~IHh~D~LR~  110 (326)
T KOG0821|consen   39 TDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADV-ARLLVVEKDTRFIPGLQMLSEAA----PGKLRIHHGDVLRF  110 (326)
T ss_pred             HHHHHHhccccccceeEEecCCCCchhHHHHhcch-hheeeeeeccccChHHHHHhhcC----CcceEEecccccee
Confidence            44555555555567899999999999999998864 47778888876655544433333    45788888887643

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=81.91  E-value=15  Score=30.71  Aligned_cols=105  Identities=21%  Similarity=0.158  Sum_probs=61.4

Q ss_pred             HHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          165 EFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       165 ~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ..+.+.+.+..  ..+.+|+=|||=+-...  +.+ ..+..+++..|++......            ..+ .++.-|...
T Consensus        11 T~~~l~~~l~~~~~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~RF~~~------------~~~-~F~fyD~~~   75 (162)
T PF10237_consen   11 TAEFLARELLDGALDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDRRFEQF------------GGD-EFVFYDYNE   75 (162)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecchHHhc------------CCc-ceEECCCCC
Confidence            33444444332  34679999999774443  333 3345589999999864332            123 455666644


Q ss_pred             ---CC-CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEE
Q 018003          242 ---LP-FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       242 ---~p-~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~  286 (362)
                         +| .-.++||+|++---+  +...  .+....+.-++|+++.+++.+.
T Consensus        76 p~~~~~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~Tg  124 (162)
T PF10237_consen   76 PEELPEELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCTG  124 (162)
T ss_pred             hhhhhhhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEecH
Confidence               22 115789999974333  1111  1344556667788899988765

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK07806 short chain dehydrogenase; Provisional

Probab=81.90  E-value=27  Score=30.68  Aligned_cols=102  Identities=17%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             CCeEEEEcCccc--h-HHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC---
Q 018003          178 GGNIIDASCGSG--L-FSRIFAKSGLFSLVVALDYSE-NMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  245 (362)
Q Consensus       178 ~~~vLDiGcG~G--~-~~~~l~~~~~~~~v~gvD~s~-~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~---  245 (362)
                      ++++|-.|++.|  . +...+.+.|.  +|++++-+. ...+...+.++..    ..++.++.+|+.+..     +.   
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~~   79 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAA----GGRASAVGADLTDEESVAALMDTAR   79 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHHH
Confidence            568898887443  3 3344444555  888887653 2333333333332    346778889987632     00   


Q ss_pred             --CCcceEEEecccccCCC-------------CHHHHHHHHHhhccCCcEEEEEE
Q 018003          246 --SSSIDAVHAGAAIHCWS-------------SPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       246 --~~~fD~V~~~~vl~h~~-------------d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                        -+..|+|+.+.......             -+..+++.+.+.++.+|.+++..
T Consensus        80 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is  134 (248)
T PRK07806         80 EEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT  134 (248)
T ss_pred             HhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence              13588888665432110             13356777777777677766553

>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins

Probab=81.86  E-value=0.89  Score=31.94  Aligned_cols=31  Identities=19%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      ..-.||.||......         .....+.|+.||....
T Consensus        27 TSq~C~~CG~~~~~~---------~~~r~~~C~~Cg~~~~   57 (69)
T PF07282_consen   27 TSQTCPRCGHRNKKR---------RSGRVFTCPNCGFEMD   57 (69)
T ss_pred             CccCccCcccccccc---------cccceEEcCCCCCEEC
Confidence            446699999876541         2246899999997643

More information about these proteins can be found at Protein of the Month: Transposase [].

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=81.77  E-value=21  Score=33.47  Aligned_cols=98  Identities=14%  Similarity=0.091  Sum_probs=57.9

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---C--CCCCC
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---L--PFASS  247 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~--p~~~~  247 (362)
                      ...++.+||=.|+|. |..+..+++......+++++.+++..+.+++.         .-..++..+-..   +  .....
T Consensus       157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~---------Ga~~~i~~~~~~~~~~~~~~~~~  227 (347)
T PRK10309        157 QGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSL---------GAMQTFNSREMSAPQIQSVLREL  227 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc---------CCceEecCcccCHHHHHHHhcCC
Confidence            345688999999875 66666666653222478999999888877542         111111111100   0  01123


Q ss_pred             cce-EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          248 SID-AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       248 ~fD-~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .+| +|+     +.... ...+.+..+.|++||.+++.-.
T Consensus       228 ~~d~~v~-----d~~G~-~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        228 RFDQLIL-----ETAGV-PQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCCeEEE-----ECCCC-HHHHHHHHHHhhcCCEEEEEcc
Confidence            567 544     33333 2468888999999999987643

>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]

Probab=81.71  E-value=0.68  Score=34.73  Aligned_cols=40  Identities=13%  Similarity=0.296  Sum_probs=25.2

Q ss_pred             cCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....+.||.|++.....-.   ..-....+.+.|.+||..|..
T Consensus        19 L~k~FtCp~Cghe~vs~ct---vkk~~~~g~~~Cg~CGls~e~   58 (104)
T COG4888          19 LPKTFTCPRCGHEKVSSCT---VKKTVNIGTAVCGNCGLSFEC   58 (104)
T ss_pred             CCceEecCccCCeeeeEEE---EEecCceeEEEcccCcceEEE
Confidence            3467999999985433110   011123468899999987765

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=81.66  E-value=1.1  Score=29.72  Aligned_cols=36  Identities=17%  Similarity=0.262  Sum_probs=20.2

Q ss_pred             eeCCCCCCCcc-cccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..||.||+.-. +..  . ..+....+.+.|..|+...+.
T Consensus         2 kPCPfCGg~~~~~~~--~-~~~~~~~~~~~C~~Cga~~~~   38 (53)
T TIGR03655         2 KPCPFCGGADVYLRR--G-FDPLDLSHYFECSTCGASGPV   38 (53)
T ss_pred             CCCCCCCCcceeeEe--c-cCCCCCEEEEECCCCCCCccc
Confidence            56999998433 211  0 011112235589999987554

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=81.62  E-value=13  Score=34.47  Aligned_cols=66  Identities=20%  Similarity=0.332  Sum_probs=50.4

Q ss_pred             eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcceEEEecc
Q 018003          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHAGA  256 (362)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~fD~V~~~~  256 (362)
                      +++|+=||.|.+...+.+.|. ..+.++|+++.+.+.-+.+.        +  ....+|+..+.   ++. .+|+++...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~--------~--~~~~~Di~~~~~~~l~~-~~D~l~ggp   69 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANF--------P--EVICGDITEIDPSDLPK-DVDLLIGGP   69 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHH--------T--EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred             cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhcc--------c--ccccccccccccccccc-cceEEEecc
Confidence            689999999999999999984 46889999999888877763        2  68889998764   343 599999763


Q ss_pred             c
Q 018003          257 A  257 (362)
Q Consensus       257 v  257 (362)
                      -
T Consensus        70 P   70 (335)
T PF00145_consen   70 P   70 (335)
T ss_dssp             -
T ss_pred             C
Confidence            3

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=81.57  E-value=0.82  Score=43.81  Aligned_cols=34  Identities=18%  Similarity=0.464  Sum_probs=25.3

Q ss_pred             cCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      ....-.||.||..+...+          .+.++|+.||..++..
T Consensus       347 ~~~~p~Cp~Cg~~m~S~G----------~~g~rC~kCg~~~~~~  380 (421)
T COG1571         347 ERVNPVCPRCGGRMKSAG----------RNGFRCKKCGTRARET  380 (421)
T ss_pred             EEcCCCCCccCCchhhcC----------CCCcccccccccCCcc
Confidence            334446999999876655          2389999999887763

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=81.56  E-value=2.5  Score=38.74  Aligned_cols=67  Identities=13%  Similarity=0.189  Sum_probs=44.2

Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      .+.||+|+.....-|+-.|.     +.++++|+|+|++.+.-.     ...+-..-.+.+               .+.+.
T Consensus       220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~F---------------~~kv~  274 (289)
T PF14740_consen  220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQEF---------------VKKVK  274 (289)
T ss_pred             cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHHH---------------HHHHH
Confidence            46799999988776665555     778999999999987521     011111111111               24688


Q ss_pred             HHHHHCCCEEEE
Q 018003          326 RIFRQFQLVVNL  337 (362)
Q Consensus       326 ~ll~~~Gf~~v~  337 (362)
                      ++++++||+...
T Consensus       275 eLA~~aG~~p~~  286 (289)
T PF14740_consen  275 ELAKAAGFKPVT  286 (289)
T ss_pred             HHHHHCCCcccc
Confidence            999999998754

>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.47  E-value=0.89  Score=39.08  Aligned_cols=45  Identities=24%  Similarity=0.430  Sum_probs=23.3

Q ss_pred             ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      ..-..-.+.||.|+......+.............+.|++|+..+.
T Consensus        12 ~~c~~l~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~~   56 (188)
T PF08996_consen   12 KDCEPLKLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPLS   56 (188)
T ss_dssp             TT---EEEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B--
T ss_pred             cCCCceEeECCCCCCCccccccccCCccccccCcCcCCCCCCcCC
Confidence            444455688999999877665444445556677899999998433

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=81.15  E-value=3.5  Score=35.10  Aligned_cols=95  Identities=12%  Similarity=0.157  Sum_probs=52.4

Q ss_pred             HHHHhhcCCCCCC-eEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          167 ELMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~-~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      +.+.+++...++. .|+.+|||--.....+....+...++-+|. +++++.-++.+.........+..++.+|+.+..  
T Consensus        67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~  145 (183)
T PF04072_consen   67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWI  145 (183)
T ss_dssp             HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHH
T ss_pred             HHHHHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhH
Confidence            3445555333344 899999999888777777544457777776 445555555555430000123457889987521  


Q ss_pred             -------CCCCcceEEEecccccCCC
Q 018003          244 -------FASSSIDAVHAGAAIHCWS  262 (362)
Q Consensus       244 -------~~~~~fD~V~~~~vl~h~~  262 (362)
                             +..+..-++++-.++.+++
T Consensus       146 ~~L~~~g~~~~~ptl~i~Egvl~Yl~  171 (183)
T PF04072_consen  146 DALPKAGFDPDRPTLFIAEGVLMYLS  171 (183)
T ss_dssp             HHHHHCTT-TTSEEEEEEESSGGGS-
T ss_pred             HHHHHhCCCCCCCeEEEEcchhhcCC
Confidence                   2234455777778888874

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>TIGR00280 L37a ribosomal protein L37a

Probab=80.99  E-value=0.87  Score=33.79  Aligned_cols=32  Identities=22%  Similarity=0.566  Sum_probs=22.4

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....||.|+..-...         ..-++|.|..|+..+..
T Consensus        34 a~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~AG   65 (91)
T TIGR00280        34 AKYVCPFCGKKTVKR---------GSTGIWTCRKCGAKFAG   65 (91)
T ss_pred             cCccCCCCCCCceEE---------EeeEEEEcCCCCCEEeC
Confidence            457899998643211         12379999999987765

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=80.91  E-value=0.98  Score=33.49  Aligned_cols=32  Identities=34%  Similarity=0.571  Sum_probs=22.3

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.||.|+..-...         ...++|.|..|+..+..
T Consensus        35 a~y~CpfCgk~~vkR---------~a~GIW~C~~C~~~~AG   66 (90)
T PTZ00255         35 AKYFCPFCGKHAVKR---------QAVGIWRCKGCKKTVAG   66 (90)
T ss_pred             CCccCCCCCCCceee---------eeeEEEEcCCCCCEEeC
Confidence            457899998642211         12379999999987765

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=80.80  E-value=5.3  Score=38.09  Aligned_cols=108  Identities=15%  Similarity=0.140  Sum_probs=71.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------------
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------------  243 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------------  243 (362)
                      +.+.||.+|+.+.....+++.....+--|+++..+.+..+..+-... ........+..+|+...+              
T Consensus       181 ~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~-~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~  259 (364)
T KOG1269|consen  181 GVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNS-EHVDILLEIEGGDALPAETFNTDVFDLLKSFG  259 (364)
T ss_pred             cEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCc-ccccccCceeccccccceeccccHHHHHhhcc
Confidence            56899999999999999888765556778999888887776543321 001223334444433211              


Q ss_pred             ---------------CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          244 ---------------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       244 ---------------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                                     ++...+|.   ..++-|+++-..+.......++|+|.+++......
T Consensus       260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~  317 (364)
T KOG1269|consen  260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG  317 (364)
T ss_pred             chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence                           12233444   45566666767778888899999999988776653

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=80.74  E-value=23  Score=32.67  Aligned_cols=97  Identities=18%  Similarity=0.128  Sum_probs=59.2

Q ss_pred             cCCCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcce
Q 018003          173 LKPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSID  250 (362)
Q Consensus       173 l~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD  250 (362)
                      ....++.+||-.|+| .|..+..+++.. +.++++++.+++..+.+++. .       .. .++...-.... -..+.+|
T Consensus       158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~-G~~v~~~~~~~~~~~~~~~~-g-------~~-~~~~~~~~~~~~~~~~~~d  227 (330)
T cd08245         158 AGPRPGERVAVLGIGGLGHLAVQYARAM-GFETVAITRSPDKRELARKL-G-------AD-EVVDSGAELDEQAAAGGAD  227 (330)
T ss_pred             hCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh-C-------Cc-EEeccCCcchHHhccCCCC
Confidence            445567889999987 566666666552 34899999999888777542 1       11 11111110000 0124588


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +++....     . ...+.++.+.|+++|.++...
T Consensus       228 ~vi~~~~-----~-~~~~~~~~~~l~~~G~~i~~~  256 (330)
T cd08245         228 VILVTVV-----S-GAAAEAALGGLRRGGRIVLVG  256 (330)
T ss_pred             EEEECCC-----c-HHHHHHHHHhcccCCEEEEEC
Confidence            8875321     2 235788899999999998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK10458 DNA cytosine methylase; Provisional

Probab=80.57  E-value=31  Score=34.16  Aligned_cols=73  Identities=18%  Similarity=0.157  Sum_probs=49.1

Q ss_pred             HHHHHHHhhcCCCC------CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003          164 KEFELMKGYLKPVL------GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA  237 (362)
Q Consensus       164 ~~~~~l~~~l~~~~------~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (362)
                      .....+...+...+      ..+++|+=||.|.+..-+...|. ..+.++|+++.+.+.-+.++..     .+....+.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~-----~p~~~~~~~  141 (467)
T PRK10458         68 AEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYC-----DPATHRFNE  141 (467)
T ss_pred             HHHHHHHHhcccCcccCcCCCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCC-----CCccceecc
Confidence            34455665554322      45899999999999999988875 3577999999887777665321     123344556


Q ss_pred             cCCCC
Q 018003          238 DISRL  242 (362)
Q Consensus       238 d~~~~  242 (362)
                      |+..+
T Consensus       142 DI~~i  146 (467)
T PRK10458        142 DIRDI  146 (467)
T ss_pred             ChhhC
Confidence            66554

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=80.48  E-value=35  Score=28.94  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             eEEEEcCcc-c-hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-----CCC---------CCCEEEEEecCCCCC
Q 018003          180 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NFP---------KENFLLVRADISRLP  243 (362)
Q Consensus       180 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~---------~~~~~~~~~d~~~~p  243 (362)
                      +|.=||+|+ | .++..++..|.  +|+.+|.+++.++.+++++....     .+.         ..++. ...|+...-
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~   77 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV   77 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh
Confidence            356688886 4 34555566665  99999999999998888765510     000         12333 334444321


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                          ..|+|+=.- .|.++-...+++++.+.+.|+-.|.-.+...
T Consensus        78 ----~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl  117 (180)
T PF02737_consen   78 ----DADLVIEAI-PEDLELKQELFAELDEICPPDTILASNTSSL  117 (180)
T ss_dssp             ----TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE--SSS
T ss_pred             ----hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEecCCCC
Confidence                467766322 2333333588999999999998887665443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=80.09  E-value=35  Score=31.56  Aligned_cols=98  Identities=10%  Similarity=-0.030  Sum_probs=60.6

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCC-----
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRL-----  242 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~-----  242 (362)
                      +.....++.+||=.|.  |.|..+..+++.. +.++++++.+++..+.+++.        ... .++..+- ...     
T Consensus       132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~~  201 (325)
T TIGR02825       132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKL--------GFD-VAFNYKTVKSLEETLK  201 (325)
T ss_pred             HHhCCCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc--------CCC-EEEeccccccHHHHHH
Confidence            3344567889998884  3577777777663 34899999998888877652        111 1111111 011     


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ....+.+|+|+-     ....  ..+....+.|+++|+++...
T Consensus       202 ~~~~~gvdvv~d-----~~G~--~~~~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       202 KASPDGYDCYFD-----NVGG--EFSNTVIGQMKKFGRIAICG  237 (325)
T ss_pred             HhCCCCeEEEEE-----CCCH--HHHHHHHHHhCcCcEEEEec
Confidence            011245888874     2222  34688899999999998653

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
3mgg_A	276	Crystal Structure Of Methyl Transferase From Methan		9e-07
3bkw_A	243	Crystal Structure Of S-Adenosylmethionine Dependent		6e-06
4hg2_A	257	The Structure Of A Putative Type Ii Methyltransfera		1e-05
3ccf_A	279	Crystal Structure Of Putative Methyltransferase (Yp		1e-05
1vl5_A	260	Crystal Structure Of A Putative Methyltransferase (		5e-05
1ve3_A	227	Crystal Structure Of Ph0226 Protein From Pyrococcus		2e-04
3dlc_A	219	Crystal Structure Of A Putative S-Adenosyl-L-Methio		4e-04
3bus_A	273	Crystal Structure Of Rebm Length = 273		8e-04

>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
           G  +++A CG G  + I AK+   + + ++D S   L++  E    E N  K N   ++A
Sbjct: 38  GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARE--NTEKNGIK-NVKFLQA 94
Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 290
           +I  LPF  SS D +     +    SP   +  + +VL+PG    GT  +++G
Sbjct: 95  NIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG----GTITVIEG 143

>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE  L +        
Sbjct: 31  EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARA------R 83
Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284
           +  P       RAD+ +L     S D  ++  A+H     +     + + L PGG FV +
Sbjct: 84  AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143
Query: 285 T 285
           T
Sbjct: 144 T 144

>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From Anaeromyxobacter Dehalogenans. Length = 257

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238
           G+ +D  CGSG  S   A+   F  V A+D  E  ++Q           P+  + +  A+
Sbjct: 41  GDALDCGCGSGQASLGLAE--FFERVHAVDPGEAQIRQAL-------RHPRVTYAVAPAE 91
Query: 239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286
            + LP   +S+D   A  A H W       AE+ RV RPG VF   TY
Sbjct: 92  DTGLP--PASVDVAIAAQAXH-WFDLDRFWAELRRVARPGAVFAAVTY 136

>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 25/152 (16%)
Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           + +FVW       +  E +   L P  G  I+D  CG+G  +   A+SG  + V+  D +
Sbjct: 38  KHSFVW-------QYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNA 88
Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270
              +++  +      N+P  +F +  A   R+      +DAV + A +H    P   +A 
Sbjct: 89  ATXIEKARQ------NYPHLHFDVADARNFRV---DKPLDAVFSNAXLHWVKEPEAAIAS 139
Query: 271 ISRVLRPGGVFVGT-------TYIVDGPFNLI 295
           I + L+ GG FV          YI++  +N +
Sbjct: 140 IHQALKSGGRFVAEFGGKGNIKYILEALYNAL 171

>pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 7/106 (6%)
Query: 176 VLGGN--IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 233
            L GN  ++D + G G  +  FA       VVA D +E++LK    F++   +   +   
Sbjct: 34  ALKGNEEVLDVATGGGHVANAFAP--FVKKVVAFDLTEDILKVARAFIEGNGH---QQVE 88
Query: 234 LVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
            V+ D  + PF       V    A H + +P++ V+E  RVL+ GG
Sbjct: 89  YVQGDAEQXPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGG 134

>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD 238
           G ++D +CG G FS +    G    VV +D SE+ +++  E+ +   +    N   +  D
Sbjct: 40  GKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDXIRKAREYAKSRES----NVEFIVGD 93
Query: 239 ISRLPFASSSID-AVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFV 282
             +L F   + D  +   + +H        V  E+ RVL+P G F+
Sbjct: 94  ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFI 139

>pdb|3DLC|A Chain A, Crystal Structure Of A Putative S-Adenosyl-L-Methionine-Dependent Methyltransferase (Mmp1179) From Methanococcus Maripaludis At 1.15 A Resolution Length = 219

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 7/115 (6%)
Query: 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV 235
           +  G  ID   G G  S   AK   FS + ALD+S++  +   + +  ++N   +   +V
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHXNEIALKNIA-DANL-NDRIQIV 98
Query: 236 RADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 290
           + D+  +P   +  D + +  ++  W   +T   EI R+L+ G    G TYI  G
Sbjct: 99  QGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSG----GKTYIGGG 149

>pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Query: 237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296
           AD   LPF  +S DAV A  ++H        + E +RVLRPG    GT  I D  F L+ 
Sbjct: 118 ADAXDLPFEDASFDAVWALESLHHXPDRGRALREXARVLRPG----GTVAIAD--FVLLA 171
Query: 297 FSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVN 336
                ++      +  G  + + G D+ +   RQ +LVV 
Sbjct: 172 PVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVT 211

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-24
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	3e-24
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-22
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-22
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	9e-22
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-21
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-21
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	9e-21
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	2e-20
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-19
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	2e-19
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-19
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	5e-19
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	9e-19
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	9e-19
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-18
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	5e-18
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-17
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-17
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-17
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-17
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	5e-17
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	1e-16
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-16
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-16
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	5e-16
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	5e-16
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-15
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-15
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-15
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	7e-15
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	4e-14
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	2e-13
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	4e-13
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-13
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-13
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	5e-13
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	3e-12
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	7e-12
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	9e-12
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-11
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	8e-11
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-10
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	2e-10
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	2e-10
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	4e-10
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	5e-10
3ocj_A	305	Putative exported protein; structural genomics, PS	9e-10
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	1e-09
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	2e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	2e-09
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	3e-09
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	3e-09
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-09
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	4e-09
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	5e-09
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	6e-09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	6e-09
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	9e-09
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	2e-08
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	4e-08
3lcc_A	235	Putative methyl chloride transferase; halide methy	6e-08
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	1e-07
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	1e-07
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-07
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-07
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-06
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	7e-05
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	9e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	7e-04

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score =   99 bits (249), Expect = 2e-24
 Identities = 28/125 (22%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
                 +    +   L    G  I D   G+G +S   A  GLF  V A++ S  M +Q 
Sbjct: 15  TRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQA 72

Query: 218 YEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRP 277
                                   L     S+D V +  AIH +S       E+ R++R 
Sbjct: 73  ----VVHPQVE-----WFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRD 123

Query: 278 GGVFV 282
           G + +
Sbjct: 124 GTIVL 128

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 98.8 bits (246), Expect = 3e-24
 Identities = 32/197 (16%), Positives = 70/197 (35%), Gaps = 28/197 (14%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
            F +   +  W                   + Y+K      ++D  CG G  +   +++G
Sbjct: 25  EFWNQNSQEMWDSGSR-------STIIPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTG 75

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
                V +D SE M+++       +      +   ++ D+S LPF +   +A+ A  ++ 
Sbjct: 76  --YKAVGVDISEVMIQKG------KERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127

Query: 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVL 319
               P   + EI RVL+  G                 + RL  +    +          +
Sbjct: 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVVCNT---------M 178

Query: 320 GFDDLKRIFRQ--FQLV 334
              + +++ ++  F++V
Sbjct: 179 MPWEFEQLVKEQGFKVV 195

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 93.3 bits (232), Expect = 3e-22
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE ML +        
Sbjct: 31  EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARA------R 83

Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT 284
           +  P       RAD+ +L     S D  ++  A+H     +     + + L PGG FV +
Sbjct: 84  AAGPDTGITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFS 143

Query: 285 T 285
           T
Sbjct: 144 T 144

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 93.4 bits (232), Expect = 4e-22
 Identities = 33/160 (20%), Positives = 67/160 (41%), Gaps = 9/160 (5%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
             P  G  +++A CG G  + I AK+   + + ++D S   L++  E  ++      +N 
Sbjct: 35  YPP--GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN---GIKNV 89

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
             ++A+I  LPF  SS D +     +    SP   +  + +VL+PGG          G  
Sbjct: 90  KFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG-DHGSC 148

Query: 293 NLIPFSRLLRQV--CFLDLKIVGFSIPVLGFDDLKRIFRQ 330
              P  +   +   C + ++       ++G   +  + ++
Sbjct: 149 YFHPEGKKAIEAWNCLIRVQAYMKGNSLVG-RQIYPLLQE 187

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 91.4 bits (227), Expect = 9e-22
 Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 10/156 (6%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
            G  ID   G G  S   AK   FS + ALD+S++M +   + +   +   +     V+ 
Sbjct: 44  AGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQI--VQG 100

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF 297
           D+  +P   +  D + +  ++  W   +T   EI R+L+ GG       I  G  N    
Sbjct: 101 DVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTY----IGGGFGNKELR 156

Query: 298 SRLLRQVCFLDLKIVGFSIPVLGF---DDLKRIFRQ 330
             +  ++   +     F+   +     +  + +  +
Sbjct: 157 DSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDE 192

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 91.9 bits (228), Expect = 1e-21
 Identities = 26/163 (15%), Positives = 44/163 (26%), Gaps = 21/163 (12%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
                +  +            G                    ++   G+G  +      G
Sbjct: 17  AHPPEVAGQIATAMASAVHPKGE---------------EPVFLELGVGTGRIALPLIARG 61

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH 259
                +ALD    ML+      +Q+         +V+AD   +P    S+  V      H
Sbjct: 62  YR--YIALDADAAMLEV----FRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115

Query: 260 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR 302
                   +AE  RVL+PGG  +      +         R   
Sbjct: 116 LVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRA 158

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 88.2 bits (219), Expect = 3e-21
 Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 17/117 (14%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
           +     G I+D  CG+G + +   +    + +  +D +   LK+            KE F
Sbjct: 13  IFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEV-----------KEKF 59

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD 289
             V           +S+D +    + H        ++E+ R+L+  G  +    I+D
Sbjct: 60  DSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI----IID 112

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 89.2 bits (221), Expect = 9e-21
 Identities = 23/123 (18%), Positives = 44/123 (35%), Gaps = 7/123 (5%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
             E+  +K  L       ++D  CG G      A+ G    V+ +D SE ML +      
Sbjct: 30  AGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEA----- 83

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
            +           +  I  +     + + V +  A+H  +S      ++   L+  G F+
Sbjct: 84  -KRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFI 142

Query: 283 GTT 285
            + 
Sbjct: 143 FSV 145

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 87.7 bits (217), Expect = 2e-20
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 10/139 (7%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
            L+  Y+K    G ++D +CG G FS +    G    VV +D SE+M+++  E+ +    
Sbjct: 30  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE--VVGVDISEDMIRKAREYAKSR-- 83

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 284
             + N   +  D  +L F   + D V    +I  +     +    E+ RVL+P G F+  
Sbjct: 84  --ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 141

Query: 285 TYIVDGPFNLIPFSRLLRQ 303
              +      +  S ++ Q
Sbjct: 142 FTDLRELLPRLKESLVVGQ 160

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 86.0 bits (213), Expect = 1e-19
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
            +   +           ++D + G G  +  FA       VVA D +E++LK    F++ 
Sbjct: 24  SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG 81

Query: 224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
                 +    V+ D  ++PF       V    A H + +P++ V+E  RVL+ GG  +
Sbjct: 82  N---GHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL 137

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 84.5 bits (209), Expect = 2e-19
 Identities = 17/129 (13%), Positives = 40/129 (31%), Gaps = 12/129 (9%)

Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
            G     E    ++       + G I+D   G+G ++   A  G    +  L+ +  +++
Sbjct: 20  LGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVE 77

Query: 216 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC--WSSPSTGVAEISR 273
              +        P   F      I+ L  +      + A  ++           +  +  
Sbjct: 78  LARQ------THPSVTF--HHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRM 129

Query: 274 VLRPGGVFV 282
            +  GG  +
Sbjct: 130 AVEDGGGLL 138

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 83.8 bits (207), Expect = 3e-19
 Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 9/182 (4%)

Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
                 P+     +K   +  L   ++D   G  L          +     ++ S+  LK
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 216 QCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISR 273
           +   F ++ +   K N    + DI +LPF   S+  V++   I           + EI R
Sbjct: 61  KAENFSRENN--FKLNI--SKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKR 116

Query: 274 VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQL 333
           VL+PGG+                  ++         +        +  ++  + F+  ++
Sbjct: 117 VLKPGGLACINFLTTKDE-RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKV 175

Query: 334 VV 335
           + 
Sbjct: 176 LF 177

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 83.8 bits (207), Expect = 5e-19
 Identities = 37/199 (18%), Positives = 70/199 (35%), Gaps = 26/199 (13%)

Query: 154 FVWGGFPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           FV G     ++ F   +  L+ V+    GN+++   G+G  +     +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA- 269
             M          +   PK  F +   D        +SID + +  A H  +     VA 
Sbjct: 77  REMRMIA------KEKLPK-EFSITEGDFLSFEV-PTSIDTIVSTYAFHHLTDDEKNVAI 128

Query: 270 -EISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQVCFLDLKIVGFSIPVLGF---DDL 324
            + S++L  GG  V      D  F +   + + +          +   +    +     +
Sbjct: 129 AKYSQLLNKGGKIV----FADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVM 184

Query: 325 KRIFRQ--FQLVVNLKLFY 341
           + IF    F  V   +L +
Sbjct: 185 QTIFENNGFH-VTFTRLNH 202

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 82.9 bits (205), Expect = 9e-19
 Identities = 33/131 (25%), Positives = 46/131 (35%), Gaps = 14/131 (10%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
            +E   +KG L P  G ++++   G+G + R           V ++ SE ML        
Sbjct: 24  AEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRRRA- 76

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
                       VRA    LPF   S D V     +         + E  RVLRPGG  V
Sbjct: 77  -------PEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALV 129

Query: 283 GTTYIVDGPFN 293
                   P+ 
Sbjct: 130 VGVLEALSPWA 140

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 82.5 bits (204), Expect = 9e-19
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 17/140 (12%)

Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
           Y + WR   +         E  L+        G  I+DA CG G      +K G    V+
Sbjct: 19  YAQRWRN--LAAAGNDIYGEARLIDAMAPR--GAKILDAGCGQGRIGGYLSKQGHD--VL 72

Query: 206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS 265
             D    ++         + +FP+  +  V  D+S    + +  D + +   +  + +  
Sbjct: 73  GTDLDPILIDYA------KQDFPEARW--VVGDLSVDQISETDFDLIVSAGNVMGFLAED 124

Query: 266 TG---VAEISRVLRPGGVFV 282
                +A I R L   G  V
Sbjct: 125 GREPALANIHRALGADGRAV 144

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 82.9 bits (205), Expect = 2e-18
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 5/105 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D   G+G  +  F+        + +D ++ M++    F Q++     EN    + 
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK---GVENVRFQQG 76

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
               LPF   S D +    A H +S     V E++RVL+  G F+
Sbjct: 77  TAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL 121

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 81.8 bits (202), Expect = 5e-18
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 14/117 (11%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++ YLK      ++D   G+G +S    + G    VV +D S+ ML+   E       
Sbjct: 46  SFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVARE------- 94

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHA-GAAIHCWSSPSTGVAEISRVLRPGGVFV 282
             K    +V A    LPF S + +AV A G  +    +     +EI RVL P G+ +
Sbjct: 95  --KGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 16/105 (15%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
            G  ++   G+G F+            + ++ SE M +             K    +++ 
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIA----------RKRGVFVLKG 91

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
               LP    S D       I     P   + E  R+L+ GG  +
Sbjct: 92  TAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLI 136

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 17/162 (10%)

Query: 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYE 219
            PEK  +     LK   G  ++D   G+G +    +K  G    V A+D  E M+   +E
Sbjct: 25  DPEKVLKEFG--LKE--GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80

Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
            V +      +N  +++++ +++P   +++D +      H  S P   + E+ RV +P  
Sbjct: 81  KVNKL---GLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFA 137

Query: 280 VFVGTTYIVD-----GPFNLIPFSRLLRQVCFLDLKIVGFSI 316
                  I+D           P          L L+  G  +
Sbjct: 138 YLA----IIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRV 175

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 9/134 (6%)

Query: 150 WRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD 208
           W      G      +   + +   +       ++D  CG G   R  A  G     V +D
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG--IEAVGVD 81

Query: 209 YSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGV 268
               ++       +             +   +++P      D + A  A+         +
Sbjct: 82  GDRTLVDAA----RAAGAGEVHLASYAQLAEAKVPVGKD-YDLICANFALL-HQDIIELL 135

Query: 269 AEISRVLRPGGVFV 282
           + +  +L PGG  V
Sbjct: 136 SAMRTLLVPGGALV 149

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 79.9 bits (197), Expect = 2e-17
 Identities = 28/148 (18%), Positives = 53/148 (35%), Gaps = 13/148 (8%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194
           F   F+   ++   RQ     G   PE  ++       L       I D  CG+G  +  
Sbjct: 11  FDFSFICNYFKLLKRQ-----GPGSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLF 63

Query: 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254
            A       +  +D   + ++   E   + +   +     +   +  LPF +  +D + +
Sbjct: 64  LADYVKGQ-ITGIDLFPDFIEIFNENAVKANCADRVKG--ITGSMDNLPFQNEELDLIWS 120

Query: 255 GAAIHCWSSPSTGVAEISRVLRPGGVFV 282
             AI+       G+ E S+ L+ GG   
Sbjct: 121 EGAIYN-IGFERGMNEWSKYLKKGGFIA 147

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 79.3 bits (195), Expect = 5e-17
 Identities = 32/181 (17%), Positives = 57/181 (31%), Gaps = 18/181 (9%)

Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLF 191
           ++ F    F S  Y    R        P  P   ++++  Y        ++D  CG G  
Sbjct: 1   SSTFSASDFNSERYSSS-R--------PSYPSDFYKMIDEYH-DGERKLLVDVGCGPGTA 50

Query: 192 SRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-FPKENFLLVRAD----ISRLPFA 245
           +   A+    F  ++  D S  M+K      +   + +   +F +  +D    +      
Sbjct: 51  TLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110

Query: 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVC 305
              ID + A    H W             LR  G      Y      +   F  L+ +V 
Sbjct: 111 KQKIDMITAVECAH-WFDFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVP 169

Query: 306 F 306
           +
Sbjct: 170 Y 170

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 14/132 (10%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
           L P  G  I+D  CG+G  +   A+SG  + V+  D +  M+++         N+P  +F
Sbjct: 53  LNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKA------RQNYPHLHF 104

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
            +  AD          +DAV + A +H    P   +A I + L+ GG FV       G  
Sbjct: 105 DV--ADARNFRVDKP-LDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG---GKG 158

Query: 293 NLIPFSRLLRQV 304
           N+      L   
Sbjct: 159 NIKYILEALYNA 170

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 5/124 (4%)

Query: 160 PGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218
           PG  +       ++  +     I D  CG+G  + + A       V  LD+    +    
Sbjct: 28  PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIFN 86

Query: 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG 278
              +Q     +     +   +  LPF +  +D + +  AI+       G+ E  + L+ G
Sbjct: 87  RNARQSG--LQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFER-GLNEWRKYLKKG 143

Query: 279 GVFV 282
           G   
Sbjct: 144 GYLA 147

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 76.6 bits (188), Expect = 2e-16
 Identities = 26/162 (16%), Positives = 47/162 (29%), Gaps = 24/162 (14%)

Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
           Y   W +     G          +   L P     +++A CG G  +  F          
Sbjct: 21  YRHPWARVLS--GPDPELTFDLWLSRLLTP--QTRVLEAGCGHGPDAARFGPQAAR--WA 74

Query: 206 ALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP 264
           A D+S  +LK         +N P  +          LP    +    + +         P
Sbjct: 75  AYDFSPELLKLA------RANAPHADVYEWNGK-GELPAGLGAPFGLIVSRRG------P 121

Query: 265 STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF 306
           ++ +  +  +  P   F+     V    N+      L  V +
Sbjct: 122 TSVILRLPELAAPDAHFL----YVGPRLNVPEVPERLAAVGW 159

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 76.4 bits (188), Expect = 5e-16
 Identities = 35/162 (21%), Positives = 58/162 (35%), Gaps = 19/162 (11%)

Query: 145 IYERGWRQNFVWG--GFPGPEKEFE----------LMKGYLKPVLGGNIIDASCGSGLFS 192
            + R W +N  +G     G +   +          +    ++   G  ++D  CG G  +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS--GDRVLDVGCGIGKPA 76

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
              A +     V  +  S   + Q            +  F    AD   LPF  +S DAV
Sbjct: 77  VRLATARDVR-VTGISISRPQVNQANARATAAGLANRVTF--SYADAMDLPFEDASFDAV 133

Query: 253 HA-GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 293
            A  +  H        + E++RVLRPGG      +++  P  
Sbjct: 134 WALESLHH-MPDRGRALREMARVLRPGGTVAIADFVLLAPVE 174

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 74.9 bits (184), Expect = 5e-16
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 16/122 (13%)

Query: 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           G L    G  I++  CG+G  +     +G    V A D S  +  +    + +       
Sbjct: 39  GELPA--GAKILELGCGAGYQAEAMLAAGFD--VDATDGSPELAAEASRRLGRPV----- 89

Query: 231 NFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGTTYIV 288
                     +L    +  DAV A A +           +  I R L+PGG+F  +    
Sbjct: 90  ----RTMLFHQLDAIDA-YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144

Query: 289 DG 290
           +G
Sbjct: 145 EG 146

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 74.2 bits (182), Expect = 1e-15
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 12/118 (10%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++      + G++++ + G+G ++R  +       V ALD S  M+ +          
Sbjct: 36  AALERLRAGNIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEA-----GRHG 88

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFV 282
                F   + D+          DAV     +              +   + PGGV  
Sbjct: 89  LDNVEF--RQQDLFDWTP-DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVE 143

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 75.0 bits (184), Expect = 1e-15
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 50/220 (22%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTC------KKTYSGVGTHFDMTAASGSKD 125
            +CP+C++PL+              +S  C         K+ Y     +        S+D
Sbjct: 3   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGY----VNLLPVQHKRSRD 47

Query: 126 YGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
            G+  S      R  F+   + +  R   V             ++  L       ++D  
Sbjct: 48  PGD--SAEMMQARRAFLDAGHYQPLRDAIV-----------AQLRERL-DDKATAVLDIG 93

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245
           CG G ++  FA +        LD S+  +K           +P        A   RLPF+
Sbjct: 94  CGEGYYTHAFADALPEITTFGLDVSKVAIKAA------AKRYP--QVTFCVASSHRLPFS 145

Query: 246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285
            +S+DA+          +P     E++RV++PGG  +  T
Sbjct: 146 DTSMDAI------IRIYAPCK-AEELARVVKPGGWVITAT 178

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 75.0 bits (184), Expect = 2e-15
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 6/116 (5%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 226
           L+    K     +I+D  CG G    +        S    +D  E +L +  E  +    
Sbjct: 13  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL-- 70

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
               +   +  D + +       D     A +   ++P T + ++   ++ GG  +
Sbjct: 71  --PYDSEFLEGDATEIELNDK-YDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 123

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 72.1 bits (177), Expect = 7e-15
 Identities = 32/144 (22%), Positives = 50/144 (34%), Gaps = 12/144 (8%)

Query: 145 IYERGWRQNFVWGGF-PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
           + E  W +  V G   P     + ++  YL+      I+D  CGSG  S   A  G    
Sbjct: 1   MPESYWEK--VSGKNIPSSLDLYPIIHNYLQE--DDEILDIGCGSGKISLELASKG--YS 54

Query: 204 VVALDYSENMLKQCYEFVQQE--SNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HC 260
           V  +D +   ++      +    +            + S L F  SS D     A +   
Sbjct: 55  VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV 114

Query: 261 --WSSPSTGVAEISRVLRPGGVFV 282
                 S  + E+ RVL+PG    
Sbjct: 115 PDPKERSRIIKEVFRVLKPGAYLY 138

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 71.0 bits (174), Expect = 4e-14
 Identities = 39/237 (16%), Positives = 75/237 (31%), Gaps = 46/237 (19%)

Query: 91  IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
           +E++ G S    T K        ++D   +                         Y   W
Sbjct: 3   VENSNGQSQPAATSKTVKDNAEIYYDDDDSDR----------------------FYFHVW 40

Query: 151 -RQNFVWGGFPGPEKEFEL----------------MKGYLKPVLGGNIIDASCGSGLFSR 193
             ++   G +  P  + E+                M G L+       +D   G G  +R
Sbjct: 41  GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQR--QAKGLDLGAGYGGAAR 98

Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH 253
              +    S +  L+ +    K+  E+  Q      +N  +       +P   +S D + 
Sbjct: 99  FLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAG--LADNITVKYGSFLEIPCEDNSYDFIW 155

Query: 254 A-GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL 309
           +  A +H          E +RVL+P GV   T  + +   +      +L ++   D+
Sbjct: 156 SQDAFLHS-PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 211

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 67.7 bits (165), Expect = 2e-13
 Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 25/155 (16%)

Query: 147 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVA 206
                  + W G         L++  L+P     I+   CG+   S      G F  V +
Sbjct: 16  GAADSAPYDWFG--DFSSFRALLEPELRP--EDRILVLGCGNSALSYELFLGG-FPNVTS 70

Query: 207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHC------ 260
           +DYS  ++          ++ P+  +     D+ +L F S+S D V     +        
Sbjct: 71  VDYSSVVVAAMQA---CYAHVPQLRW--ETMDVRKLDFPSASFDVVLEKGTLDALLAGER 125

Query: 261 --WSSPSTGVAEISRVL-------RPGGVFVGTTY 286
             W+  S GV  + +VL        PGG F+  T 
Sbjct: 126 DPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 66.4 bits (162), Expect = 4e-13
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           +  +V+G  P        +      +  G I+  + G G  +   A  G    V A+D S
Sbjct: 8   QSEYVYGTEPND-----FLVSVANQIPQGKILCLAEGEGRNACFLASLGYE--VTAVDQS 60

Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270
              L +  +  Q++          V+++++     + + + + +       S       +
Sbjct: 61  SVGLAKAKQLAQEK----GVKITTVQSNLADFDIVADAWEGIVSIFCHLPSSLRQQLYPK 116

Query: 271 ISRVLRPGGVFVGTTY 286
           + + L+PGGVF+   +
Sbjct: 117 VYQGLKPGGVFILEGF 132

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 69.0 bits (168), Expect = 4e-13
 Identities = 38/208 (18%), Positives = 65/208 (31%), Gaps = 26/208 (12%)

Query: 90  SIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFR--MPFMSFIYE 147
           S  S    S    +       V  ++  T  S +         A          ++ I +
Sbjct: 4   SCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63

Query: 148 RGWRQNFVWG-GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVV 205
                   +G G         L         G  ++D  CG+G    + +K  G    V+
Sbjct: 64  EVL--EKFYGCGST-------LPADGSLE--GATVLDLGCGTGRDVYLASKLVGEHGKVI 112

Query: 206 ALDYSENMLKQC-----YEFVQQESNFPKENFLLVRADISRL------PFASSSIDAVHA 254
            +D  +N L+       Y   +   +  + N   ++  I  L          SS+D V +
Sbjct: 113 GVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172

Query: 255 GAAIHCWSSPSTGVAEISRVLRPGGVFV 282
               +  ++      EI RVLR GG   
Sbjct: 173 NCVCNLSTNKLALFKEIHRVLRDGGELY 200

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 22/143 (15%), Positives = 42/143 (29%), Gaps = 23/143 (16%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
               ++  +  +                          +I+D   G+GL S    +    
Sbjct: 24  FIPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPE 68

Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
           +    +D SE ML+       +           + AD S+  F     D V +  +IH  
Sbjct: 69  ATFTLVDMSEKMLEIA-----KNRFRGNLKVKYIEADYSKYDFEEKY-DMVVSALSIHHL 122

Query: 262 SSP--STGVAEISRVLRPGGVFV 282
                         +L+  G+F+
Sbjct: 123 EDEDKKELYKRSYSILKESGIFI 145

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 67.2 bits (164), Expect = 5e-13
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 13/133 (9%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
           +      N  D  CG G  + +       +++  +D  ++ML++           P  NF
Sbjct: 29  VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKA------ADRLPNTNF 82

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
              +AD++    A    D ++A A           ++++   L  GGV            
Sbjct: 83  --GKADLATWKPA-QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP---DNL 136

Query: 293 NLIPFSRLLRQVC 305
              P    + +  
Sbjct: 137 QE-PTHIAMHETA 148

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 65.1 bits (158), Expect = 3e-12
 Identities = 28/212 (13%), Positives = 59/212 (27%), Gaps = 32/212 (15%)

Query: 85  GDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSF 144
           G  S+  + A+  +L  +          +  +M  A  + D  +   P   +        
Sbjct: 1   GPGSMPSKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD---PEKGW-------- 49

Query: 145 IYERG---WRQ-----NFVWGGF---PGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFS 192
            Y +    WR      + V GG       + E        L        +D   G G  +
Sbjct: 50  -YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRIT 108

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV 252
           +       ++    L+  ++ML++    +          F  + A +       ++ D +
Sbjct: 109 KNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVG---KF--ILASMETATLPPNTYDLI 162

Query: 253 HAGAAIHCWSSP--STGVAEISRVLRPGGVFV 282
                    +            + L P G   
Sbjct: 163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIF 194

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 64.0 bits (156), Expect = 7e-12
 Identities = 29/155 (18%), Positives = 51/155 (32%), Gaps = 13/155 (8%)

Query: 145 IYERGWRQNFV-WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
           +YE  + +N++  GG      +  L    L       ++D   G G       +      
Sbjct: 26  VYEFIFGENYISSGGLE--ATKKILSDIELNE--NSKVLDIGSGLGGGCMYINEKYGAH- 80

Query: 204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS 263
              +D   N++    E V       K  F     DI    F  ++ D +++  AI   S 
Sbjct: 81  THGIDICSNIVNMANERVSGN---NKIIF--EANDILTKEFPENNFDLIYSRDAILALSL 135

Query: 264 P--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 296
              +    +  + L+P G  + T Y      N   
Sbjct: 136 ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD 170

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 62.5 bits (152), Expect = 9e-12
 Identities = 31/196 (15%), Positives = 63/196 (32%), Gaps = 33/196 (16%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
           M    E  +   +            E+++  +K V  G  +D  CG+G  S   A +G  
Sbjct: 3   MVIRDENYFTDKYELTRTHS-----EVLE-AVKVVKPGKTLDLGCGNGRNSLYLAANGYD 56

Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
             V A D +   +         E N    +      D++ L F     D + +   +   
Sbjct: 57  --VDAWDKNAMSIANVERIKSIE-NLDNLHT--RVVDLNNLTF-DRQYDFILSTVVLMFL 110

Query: 262 SSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQVCFLDLKIVGFSIPV 318
            +      +A + R  +PGG  +    +    +   + F    ++               
Sbjct: 111 EAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKE--------------- 155

Query: 319 LGFDDLKRIFRQFQLV 334
               +L+R +  ++ V
Sbjct: 156 ---GELRRYYEGWERV 168

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 61.3 bits (149), Expect = 5e-11
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 12/123 (9%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
            +    +   ++P  G  I D  CG+G  + + A    +  V  +D SE ML+   E   
Sbjct: 21  PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH--YE-VTGVDLSEEMLEIAQEKAM 75

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGG 279
           +       +      D+  L              +++   + +         +R+L  GG
Sbjct: 76  ET----NRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGG 131

Query: 280 VFV 282
             +
Sbjct: 132 KLL 134

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 60.5 bits (146), Expect = 8e-11
 Identities = 20/130 (15%), Positives = 38/130 (29%), Gaps = 6/130 (4%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++           +D   G G  ++      LF  V  +D +E+ L Q   ++ +E  
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLL-LPLFREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
                       +        S D +     I   +    +  +      LRP G+ V  
Sbjct: 128 ---RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIK 184

Query: 285 TYIVDGPFNL 294
             +      L
Sbjct: 185 DNMAQEGVIL 194

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 13/126 (10%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
           +K  + +        ++  + +D +CG+G  +             A+D S+ ML +    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN--TWAVDLSQEMLSEAENK 78

Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLR 276
            + +         L   DIS L   +   D +     + +              +S  L+
Sbjct: 79  FRSQ----GLKPRLACQDISNLNI-NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLK 133

Query: 277 PGGVFV 282
            GGVF+
Sbjct: 134 EGGVFI 139

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 18/114 (15%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
            G +++ + G G  +  F   G    V AL+ S ++L    + + +     ++   LV+ 
Sbjct: 83  SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140

Query: 238 DISRLPF---------ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
           D+S             +S SI+ +        +       A +   L PGG F+
Sbjct: 141 DMSAFALDKRFGTVVISSGSINELDEADRRGLY-------ASVREHLEPGGKFL 187

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 21/150 (14%)

Query: 146 YERGWRQNFVWGGFP----GPEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSG 199
           +E+ W +  V           E+   +     + +      +ID +CG+G  ++  ++  
Sbjct: 19  WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQ-- 76

Query: 200 LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA-----VHA 254
            F  V+ LD S++ L+               N      D      A+          ++ 
Sbjct: 77  FFPRVIGLDVSKSALEIA------AKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYM 130

Query: 255 GAAIHCWSSP--STGVAEISRVLRPGGVFV 282
               H             +  +L   G   
Sbjct: 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMY 160

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 19/131 (14%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES 225
           + +K ++K   G  ++DA+CG+G  +   A   G    V   D  +  +    + +   +
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

Query: 226 NFPKENFLLVRADI-SRLPFASSSIDAVHAGAAIHCW---------SSPSTGVAEISRVL 275
               +   L++    +   +    + AV                   +    +++   +L
Sbjct: 72  L--IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELL 129

Query: 276 RPGGVFVGTTY 286
             GG+     Y
Sbjct: 130 VTGGIITVVIY 140

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 58.3 bits (141), Expect = 5e-10
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 13/126 (10%)

Query: 163 EKEFELMKGYLK---PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           + E + ++   K         ++D +CG+G+ +   A+ G    VV LD  E ML+    
Sbjct: 24  KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARR 81

Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHA-GAAIHCWSSPS--TGVAEISRVLR 276
             ++           ++ D+  + F  +  DAV    + I  +         ++++  L+
Sbjct: 82  KAKER----NLKIEFLQGDVLEIAF-KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALK 136

Query: 277 PGGVFV 282
           PGGVF+
Sbjct: 137 PGGVFI 142

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 58.2 bits (140), Expect = 9e-10
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 9/120 (7%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQES 225
             ++ +L+P  G  +    CG          S    + +V +DY    L          +
Sbjct: 110 RALQRHLRP--GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA 167

Query: 226 NFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA---EISRVLRPGGVFV 282
                   L R D  +L       D + +          +          + L+PGG  V
Sbjct: 168 --LAGQITLHRQDAWKLDTREG-YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV 224

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 19/158 (12%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 196
           +     + +++      ++        +    + G L+      ++D +CG+G+ S +  
Sbjct: 22  YADGEAARVWQL-----YIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76

Query: 197 KSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLP---FASSSIDAV 252
           + G    V ++D S+ MLK   +           + +++  A+   L     A    DAV
Sbjct: 77  EEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134

Query: 253 -HAGAAIHCWSSPSTG-------VAEISRVLRPGGVFV 282
              G +                 +  I+ ++RPGG+ V
Sbjct: 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 56.5 bits (136), Expect = 2e-09
 Identities = 26/167 (15%), Positives = 54/167 (32%), Gaps = 36/167 (21%)

Query: 152 QNFVWGGFPGPEKEFELMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           + F       P +  + +   L+       + D  CG    +       + + V   D  
Sbjct: 41  RGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASS-----IRNPVHCFD-- 93

Query: 211 ENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAE 270
                               +  +   D++++P    S+D      ++   ++    + E
Sbjct: 94  ----------------LASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTNIRDFLEE 136

Query: 271 ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLD-LKIVGFSI 316
            +RVL+PGG+      + +        SR      FL  +  +GF I
Sbjct: 137 ANRVLKPGGLL----KVAE------VSSRFEDVRTFLRAVTKLGFKI 173

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 25/131 (19%), Positives = 44/131 (33%), Gaps = 17/131 (12%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
           +L++         +++D +CG+G     F K         L+ SE+ML    +       
Sbjct: 32  DLVRSRTPE--ASSLLDVACGTGTHLEHFTKEFGD--TAGLELSEDMLTHARK------R 81

Query: 227 FPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLRPGGVFV 282
            P       + D+           AV    +++    +       VA  +  L PGGV V
Sbjct: 82  LPDATL--HQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVV 138

Query: 283 GTTYIVDGPFN 293
              +     F 
Sbjct: 139 VEPWWFPETFA 149

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SNFPK 229
            LK V    +ID  CG G    +  K   F  +  +D S ++L++  + ++ +      +
Sbjct: 24  VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQR 83

Query: 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
           +   L ++ +       S  DA      I              +    RP  V V T
Sbjct: 84  KRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 18/177 (10%), Positives = 41/177 (23%), Gaps = 19/177 (10%)

Query: 180 NIIDASCGSGLFSRIFAK------SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFL 233
            I+    G+G               G+      ++ S   + +  E V + SN     F 
Sbjct: 55  KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114

Query: 234 LVRADISRL------PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 287
             +   S               D +H    ++        +     +L      +     
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174

Query: 288 VDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHI 344
               ++ +          +            +  DDL ++     L          +
Sbjct: 175 GSSGWDKLWK-------KYGSRFPQDDLCQYITSDDLTQMLDNLGLKYECYDLLSTM 224

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 10/118 (8%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSEN------MLKQCYEFVQQES 225
           +KP  G  I++  CG G  S + A   G    V  +D +         L Q +  +    
Sbjct: 41  VKP--GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP 98

Query: 226 NFPKENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
              +            L P A    D V    ++  ++S +        +        
Sbjct: 99  LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 17/137 (12%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
            +E   +   ++       +++D +CG+G+  R  A S     V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGT--VEGLELSADMLAIARR- 90

Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVH-AGAAIHCWSSPS---TGVAEISRVLR 276
                  P         D+           AV    ++I   +  +     +   +  + 
Sbjct: 91  -----RNPDAVL--HHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVL 142

Query: 277 PGGVFVGTTYIVDGPFN 293
           P GV V   +     F 
Sbjct: 143 PDGVVVVEPWWFPENFT 159

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 54.5 bits (131), Expect = 5e-09
 Identities = 27/130 (20%), Positives = 41/130 (31%), Gaps = 17/130 (13%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
           + +   L       ++DA+ G+G  +   A  GL   V A D  E  L +  + +     
Sbjct: 14  DFLAEVLDD--ESIVVDATMGNGNDTAFLA--GLSKKVYAFDVQEQALGKTSQRLSDLG- 68

Query: 227 FPKENFLLVRADISRLP-FASSSIDAVHA------GAAIHCWSSPSTGVAEIS---RVLR 276
              EN  L+      L  +    I A          A     + P T +  I      L 
Sbjct: 69  --IENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLE 126

Query: 277 PGGVFVGTTY 286
            GG      Y
Sbjct: 127 VGGRLAIMIY 136

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 55.7 bits (134), Expect = 6e-09
 Identities = 26/196 (13%), Positives = 57/196 (29%), Gaps = 18/196 (9%)

Query: 130 MSPATEFFRMPFMS----FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
                 + R+  +S           ++   +            +    K +    ++D  
Sbjct: 69  FVEPQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLG 128

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA 245
           CG G  S   +  G    V + D++EN +    E  ++E      N      DI+     
Sbjct: 129 CGQGRNSLYLSLLGYD--VTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI- 181

Query: 246 SSSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGG-VFVGTTYIVDGPFNLIPFSRLLR 302
             + D + +       +       +  +      GG   +      D     +PFS    
Sbjct: 182 QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFA 241

Query: 303 ----QVCFLDLKIVGF 314
               +  + D + + +
Sbjct: 242 ENELKEYYKDWEFLEY 257

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 54.8 bits (132), Expect = 6e-09
 Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 16/161 (9%)

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
            ++S    +  +       +  WR +         E+  +L++  L      N ++  C 
Sbjct: 6   TMVSVDNTYQSLE-RELANDDPWRLDDNPFE---RERHTQLLRLSLSSGAVSNGLEIGCA 61

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS 247
           +G F+   A       +  +D     + +       +      +      DI +    + 
Sbjct: 62  AGAFTEKLAPHC--KRLTVIDVMPRAIGRA-----CQRTKRWSHISWAATDILQFS-TAE 113

Query: 248 SIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGG-VFVGT 284
             D +     ++     +   T +  + ++L PGG +  G+
Sbjct: 114 LFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 55.1 bits (132), Expect = 9e-09
 Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 8/133 (6%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
           L++ Y K   G +++D  CG G     + ++G       +D +E  +       +     
Sbjct: 57  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVG 283
            K  F   +    R        D + +  + H       S       I+R LRPGG F+ 
Sbjct: 114 FKVFFR-AQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172

Query: 284 TTYIVDGPFNLIP 296
           T    D       
Sbjct: 173 TVPSRDVILERYK 185

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 25/166 (15%), Positives = 45/166 (27%), Gaps = 29/166 (17%)

Query: 144 FIYERGWRQNFV-WGGFPGPEKEFEL--------MKGYLKPVLGGNIIDASCGSGLFSRI 194
                G  ++              E           G   P     ++DA CG G    +
Sbjct: 77  DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGP--DDTLVDAGCGRGGSMVM 134

Query: 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA 254
             +      V  +  S           ++          +   ++   PF   ++ A   
Sbjct: 135 AHRRFGSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRV--CNMLDTPFDKGAVTAS-- 189

Query: 255 GAAIHCWSSPSTGVA-------EISRVLRPGGVFVGTTYIVDGPFN 293
                 W++ ST          E SR L+ GG +V  T   +  + 
Sbjct: 190 ------WNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYG 229

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 23/117 (19%), Positives = 36/117 (30%), Gaps = 4/117 (3%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-- 229
            LK      +ID  CG G   +I  K   F  +  +D S   L+   E + +        
Sbjct: 24  ALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQW 83

Query: 230 ENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
           E   L++  ++         DA      I              +    +P  V V T
Sbjct: 84  ERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 52.0 bits (124), Expect = 6e-08
 Identities = 30/153 (19%), Positives = 46/153 (30%), Gaps = 12/153 (7%)

Query: 150 WRQNFV-W-GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL 207
           W +    W  G   P     +    L     G  +   CG G      A    F  VV L
Sbjct: 40  WEEEITPWDQGRATPLIVHLVDTSSLPL---GRALVPGCGGGHDVVAMASPERF--VVGL 94

Query: 208 DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSP--S 265
           D SE+ L +  E     S+   E F  V+ D+      +   D +               
Sbjct: 95  DISESALAKANE--TYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCAIEPEMRP 151

Query: 266 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 298
                +  +L+P G  +   Y +       P+ 
Sbjct: 152 AWAKSMYELLKPDGELITLMYPITDHVGGPPYK 184

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 34/203 (16%), Positives = 69/203 (33%), Gaps = 24/203 (11%)

Query: 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK 229
           K +L       ++    G+G     +      +L+VA D   + + +  E   + ++  K
Sbjct: 41  KTFLDDSNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIK 99

Query: 230 ENFLLVRADIS-----------RLPFASSSIDAVHAGAAIH-CWSSP--STGVAEISRVL 275
             +                   R  F     + +    AIH  +     +T +  +S + 
Sbjct: 100 TKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELT 159

Query: 276 RPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVV 335
             GG  + TT   DG       S+L  +  F+  K +  S     +  +++I     +V 
Sbjct: 160 ASGGKVLITTM--DGDK----LSKLTDKKTFIIHKNLPSSE---NYMSVEKIADDRIVVY 210

Query: 336 NLKLFYGHIQHYIVKIPSLCNLL 358
           N       +  YI+K   +  + 
Sbjct: 211 NPSTMSTPMTEYIIKKNDIVRVF 233

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 23/130 (17%), Positives = 47/130 (36%), Gaps = 10/130 (7%)

Query: 166 FELMKGYLKPVLGGN---IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-V 221
            +L K  L  ++G      ID   G G      A +   +  + +D  +  L    +  +
Sbjct: 10  VDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKII 69

Query: 222 QQESNFPKENFLLVRADISRLPFA-SSSIDAVHA----GAAIHCWSSPSTGV-AEISRVL 275
           ++ S     N + V A    LPF   +  D++      G  +     P+  + + ++ + 
Sbjct: 70  KKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLA 129

Query: 276 RPGGVFVGTT 285
           +    F   T
Sbjct: 130 KKEAHFEFVT 139

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D  C SG       ++G  + V  ++      +Q  E          ++ +L   
Sbjct: 33  WKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK--------LDHVVLGDI 82

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 285
           +   +P+     D V  G  +     P   + ++   ++  GV + + 
Sbjct: 83  ETMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 17/119 (14%), Positives = 34/119 (28%), Gaps = 6/119 (5%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKE 230
           +++      ++D  CGSG               ++ +D S   L +  + +  + N    
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEAC 775

Query: 231 NFL---LVRADISRLPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 284
           N     L    I         +D       I             ++  +  P  + V T
Sbjct: 776 NVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVST 834

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 34/171 (19%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
                   Y K      ++D  CG G F  +  + G+    + +D +E+M+K C      
Sbjct: 30  ARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIE--SIGVDINEDMIKFC------ 79

Query: 224 ESNFPKENFLLVRADISR--LPFASSSIDAVHAGAAI-HCWS-SPSTGVAEISRVLRPGG 279
                +  F +V++D            +D V     + H         ++     ++   
Sbjct: 80  -----EGKFNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSS 134

Query: 280 VFVGTT----------YIVDGPFNLIPFSR-----LLRQVCFLDLKIVGFS 315
             V  +               P +  P        +L  + F D+KI  F 
Sbjct: 135 YIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFE 185

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 42.4 bits (99), Expect = 7e-05
 Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 18/136 (13%)

Query: 163 EKEFELMKGYLKPVLGGN---IIDASCGSGLFSRIFAKSGLFSLVVALD-YSENMLKQCY 218
           ++  E      + +       ++D   G G      A+     LVVALD     M K   
Sbjct: 10  KRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA 69

Query: 219 EFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW---------SSPSTGVA 269
           +   + +     N L + A   RLP   S +  +H    +  W         SSP   + 
Sbjct: 70  KAAAKPAKGGLPNLLYLWATAERLP-PLSGVGELHV---LMPWGSLLRGVLGSSPEM-LR 124

Query: 270 EISRVLRPGGVFVGTT 285
            ++ V RPG  F+   
Sbjct: 125 GMAAVCRPGASFLVAL 140

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 10/118 (8%)

Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE 224
           + E   G  +   G   +    G    + I         V  ++   ++ +   + ++  
Sbjct: 112 KNEAALGRFRR--GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL 169

Query: 225 SNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
                +   ++  D + +       D +   A              I R +      +
Sbjct: 170 ---GVDGVNVITGDETVIDGLE--FDVLMVAALA---EPKRRVFRNIHRYVDTETRII 219

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 49/327 (14%), Positives = 88/327 (26%), Gaps = 113/327 (34%)

Query: 124 KDYGELMSPATEFFRMPFM---SFIYERG--WRQN--FVWGGFPGPEKEFEL-------- 168
            +Y  LMSP     R P M    +I +R   +  N  F        +   +L        
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 169 ---------MKGYLKPVLGGNII-DASCGSGLFSRIF-AKSG-----------LFSLVVA 206
                    + G  K  +  ++         +  +IF                L  L+  
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 207 L--------DYSENMLKQCYEFVQQE-SNF----PKENFLLVRADISRLPFASSSIDAVH 253
           +        D+S N +K     +Q E        P EN LLV  ++      + + +A  
Sbjct: 209 IDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN----AKAWNAF- 262

Query: 254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL------------IPFSRLL 301
               + C    +T   +++  L        +                           L 
Sbjct: 263 ---NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 302 RQVCF---LDLKIVG--------------------------FSIPVLGFDDLKRIFRQFQ 332
           R+V       L I+                            S+ VL   + +++F +  
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-- 377

Query: 333 LVVNLKLFYGHIQHYIVKIPS--LCNL 357
               L +F          IP+  L  +
Sbjct: 378 ----LSVFPPS-----AHIPTILLSLI 395

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 26/168 (15%), Positives = 44/168 (26%), Gaps = 20/168 (11%)

Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
           P            +    W  +     F     +        +L   L G I+D  CG+G
Sbjct: 175 PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNG 234

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249
           +           + VV +D S   +      V+       +    +  +           
Sbjct: 235 VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRF 293

Query: 250 DAV------HAGAAIHCWSSPSTG---VAEISRVLRPGGVFVGTTYIV 288
           +AV      H   A+      +          R L+  G      YIV
Sbjct: 294 NAVLCNPPFHQQHALT----DNVAWEMFHHARRCLKINGEL----YIV 333

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.92
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.9
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.9
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.89
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.89
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.89
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.89
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.89
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.89
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.89
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.88
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.88
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.88
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.88
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.88
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.88
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.87
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.87
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.87
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.86
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.86
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.86
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.86
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.86
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.85
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.85
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.85
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.85
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.84
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.84
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.84
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.84
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.84
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.84
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.84
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.84
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.84
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.84
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.83
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.83
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.83
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.83
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.83
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.83
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.83
3ocj_A	305	Putative exported protein; structural genomics, PS	99.83
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.83
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.83
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.83
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.82
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.82
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.82
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.82
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.82
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.81
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.81
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.81
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.81
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.81
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.81
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.81
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.8
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.8
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.8
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.8
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.8
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.8
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.79
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.79
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.79
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.79
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.79
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.78
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.78
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.78
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.78
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.77
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.77
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.77
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.77
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.77
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.76
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.75
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.75
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.75
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.75
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.75
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.75
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.75
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.75
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.75
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.73
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.73
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.72
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.72
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.71
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.71
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.71
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.7
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.7
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.7
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.7
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.7
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.69
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.69
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.68
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.68
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.68
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.67
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.67
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.67
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.66
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.66
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.66
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.65
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.65
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.65
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.65
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.65
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.65
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.65
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.65
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.64
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.64
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.63
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.63
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.63
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.62
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.62
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.62
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.61
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.61
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.61
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.61
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.61
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.61
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.6
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.6
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.6
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.6
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.59
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.59
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.59
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.58
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.58
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.58
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.58
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.58
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.57
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.57
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.57
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.56
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.56
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.56
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.56
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.56
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.56
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.55
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.55
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.55
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.55
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.54
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.54
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.54
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.54
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.53
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.53
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.53
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.53
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.53
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.53
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.53
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.52
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.52
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.52
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.51
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.51
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.51
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.51
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.5
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.5
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.5
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.5
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.5
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.5
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.48
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.47
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.47
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.47
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.46
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.46
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.46
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.45
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.45
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.45
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.44
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.44
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.44
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.44
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.43
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.43
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.43
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.43
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.42
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.42
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.41
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.41
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.4
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.4
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.39
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.38
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.38
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.38
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.37
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.37
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.36
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.36
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.36
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.35
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.35
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.34
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.34
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.34
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.34
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.34
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.34
2o07_A	304	Spermidine synthase; structural genomics, structur	99.33
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.33
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.32
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.32
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.31
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.3
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.3
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.3
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.29
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.29
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.26
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.26
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.25
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.24
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.23
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.22
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.22
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.21
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.21
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.21
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.2
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.2
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.19
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.16
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.16
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.13
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.13
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.11
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.09
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.07
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.05
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.03
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.01
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.99
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.99
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.96
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.95
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.94
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.92
3lkd_A	542	Type I restriction-modification system methyltrans	98.86
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.84
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.83
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.82
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.82
3khk_A	544	Type I restriction-modification system methylation	98.8
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.79
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.78
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.76
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.72
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.7
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.7
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.66
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.63
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.62
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.59
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.56
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.54
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.5
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	98.43
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	98.41
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.4
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.39
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	98.38
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	98.36
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.35
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	98.35
3ufb_A	530	Type I restriction-modification system methyltran	98.3
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	98.22
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.18
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.06
2k5r_A	97	Uncharacterized protein XF2673; solution structure	98.06
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.04
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.99
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.93
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.93
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.9
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.87
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.87
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.84
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.77
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.52
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.45
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.32
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.17
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.15
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.15
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	96.61
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	96.12
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.89
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.74
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.67
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.64
2oo3_A	283	Protein involved in catabolism of external DNA; st	95.5
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.43
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	95.3
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.17
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.14
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	95.08
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	94.91
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	94.47
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.46
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.45
2zig_A	297	TTHA0409, putative modification methylase; methylt	94.43
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.42
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.38
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.32
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.3
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	94.29
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.26
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.25
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.25
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	94.22
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.22
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	94.16
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.15
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.12
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	94.09
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.99
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	93.84
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	93.79
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.76
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	93.72
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.71
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	93.69
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	93.66
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	93.55
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	93.52
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	93.52
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	93.46
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	93.34
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.26
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.21
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	93.13
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.13
3gms_A	340	Putative NADPH:quinone reductase; structural genom	92.93
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	92.91
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.82
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.73
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	92.69
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.63
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.63
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	92.57
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	92.53
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.4
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	92.38
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.34
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.2
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	92.2
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	91.86
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	91.83
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.66
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	91.49
2j6a_A	141	Protein TRM112; translation termination, methyltra	91.48
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	91.39
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.21
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	91.08
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.06
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	91.05
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	90.85
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	90.74
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.68
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	90.64
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	90.59
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	90.45
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	90.26
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	90.24
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	90.2
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	89.9
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	89.59
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	89.57
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	89.43
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.31
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	88.96
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	88.91
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	88.75
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	88.73
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.46
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	88.46
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	88.31
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.19
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.18
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	87.94
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	87.72
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.61
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	87.55
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	87.36
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	87.23
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	86.99
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	86.92
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	86.89
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	86.69
3me5_A	482	Cytosine-specific methyltransferase; structural ge	86.65
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	86.65
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	86.64
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	86.58
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	86.55
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	86.42
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	86.31
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	86.24
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	86.19
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	86.15
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	85.89
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.85
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	85.5
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	85.44
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	85.3
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	85.28
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	85.24
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	85.13
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	85.1
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	84.93
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	84.74
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	84.26
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	84.09
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	84.07
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	83.91
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	83.89
3flo_B	206	DNA polymerase alpha catalytic subunit A; protein-	83.78
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	83.61
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	83.58
1xhl_A	297	Short-chain dehydrogenase/reductase family member	83.56
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	83.5
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	83.37
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	83.36
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.34
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	83.3
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	83.22
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	82.9
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	82.42
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	82.24
3h0g_L	63	DNA-directed RNA polymerases I, II, and III subuni	82.2
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	82.2
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	82.11
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	82.09
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	82.06
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	81.97
4ayb_P	48	DNA-directed RNA polymerase; transferase, multi-su	81.94
1tfi_A	50	Transcriptional elongation factor SII; transcripti	81.79
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	81.78
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	81.57
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	81.38
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	81.15
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	81.07
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	80.81
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	80.8
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.45

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.92  E-value=7.5e-25  Score=211.32  Aligned_cols=170  Identities=10%  Similarity=0.091  Sum_probs=127.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|+++  ..   ......+...+...+|+
T Consensus        95 ~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~--~~---~~~~~~~~~~~~~~l~~  167 (416)
T 4e2x_A           95 LARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREK--GI---RVRTDFFEKATADDVRR  167 (416)
T ss_dssp             HHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTT--TC---CEECSCCSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHc--CC---CcceeeechhhHhhccc
Confidence            345677777777789999999999999999999876  999999999999999875  00   00111122344445566


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++++||+|++.+++||++|+..+++++.++|||||++++.+++...      ....    ......+.. |..+++.+++
T Consensus       168 ~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~------~~~~----~~~~~~~~~-~~~~~s~~~l  236 (416)
T 4e2x_A          168 TEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLGD------IVAK----TSFDQIFDE-HFFLFSATSV  236 (416)
T ss_dssp             HHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHHH------HHHH----TCGGGCSTT-CCEECCHHHH
T ss_pred             CCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChHH------hhhh----cchhhhhhh-hhhcCCHHHH
Confidence            7789999999999999999999999999999999999999886421      1110    000111223 7888999999


Q ss_pred             HHHHHHCCCEEEEEEEe----ceeEEEEeeCc
Q 018003          325 KRIFRQFQLVVNLKLFY----GHIQHYIVKIP  352 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~----g~~~~~~~~kp  352 (362)
                      .++++++||++++....    |....+..++.
T Consensus       237 ~~ll~~aGf~~~~~~~~~~~~g~l~~~~~~~~  268 (416)
T 4e2x_A          237 QGMAQRCGFELVDVQRLPVHGGEVRYTLARQG  268 (416)
T ss_dssp             HHHHHHTTEEEEEEEEECGGGSEEEEEEEETT
T ss_pred             HHHHHHcCCEEEEEEEccCCCCEEEEEEEeCC
Confidence            99999999999887763    44555655543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.90  E-value=4.3e-23  Score=186.22  Aligned_cols=166  Identities=17%  Similarity=0.228  Sum_probs=133.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.|++.|++++...   ...++.++++|+..+|++
T Consensus        26 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~l~~~  100 (260)
T 1vl5_A           26 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFT  100 (260)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEecHHhCCCC
Confidence            45667777777889999999999999999999876  9999999999999999988765   135799999999999999


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|++..+++|++|+..+|+++.++|||||++++.++.....    +....+..... ...... +..+++.+++.
T Consensus       101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~  174 (260)
T 1vl5_A          101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFYNYVE-KERDYS-HHRAWKKSDWL  174 (260)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHHHHHH-HHHCTT-CCCCCBHHHHH
T ss_pred             CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC----HHHHHHHHHHH-HhcCcc-ccCCCCHHHHH
Confidence            9999999999999999999999999999999999999988765332    22222221111 001122 56789999999


Q ss_pred             HHHHHCCCEEEEEEEec
Q 018003          326 RIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g  342 (362)
                      ++|+++||+++......
T Consensus       175 ~~l~~aGf~~~~~~~~~  191 (260)
T 1vl5_A          175 KMLEEAGFELEELHCFH  191 (260)
T ss_dssp             HHHHHHTCEEEEEEEEE
T ss_pred             HHHHHCCCeEEEEEEee
Confidence            99999999887766554

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.90  E-value=1.7e-22  Score=182.42  Aligned_cols=174  Identities=12%  Similarity=0.118  Sum_probs=129.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      .++.+|||+|||+|.++..+++..  ++.+|+|+|+|+.|++.|++++...  ....++.++++|+.++|++  .||+|+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~--~~~~~v~~~~~D~~~~~~~--~~d~v~  144 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY--KAPTPVDVIEGDIRDIAIE--NASMVV  144 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS--CCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh--ccCceEEEeeccccccccc--ccccce
Confidence            458899999999999999998873  4569999999999999999998765  2346899999999998864  599999


Q ss_pred             ecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh-----cc------cccccccccCC
Q 018003          254 AGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL-----DL------KIVGFSIPVLG  320 (362)
Q Consensus       254 ~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~~~~~~~~s  320 (362)
                      ++.+++|++++  ..+|++++++|||||+|++.+............+..+...+..     ..      .........++
T Consensus       145 ~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s  224 (261)
T 4gek_A          145 LNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS  224 (261)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred             eeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence            99999999765  4789999999999999999988764322222222111111100     00      00011345578


Q ss_pred             HHHHHHHHHHCCCEEEEEEE-eceeEEEEeeCcc
Q 018003          321 FDDLKRIFRQFQLVVNLKLF-YGHIQHYIVKIPS  353 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~~~kp~  353 (362)
                      .+++.++|+++||+.++.++ +..+..+++.|+.
T Consensus       225 ~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~  258 (261)
T 4gek_A          225 VETHKARLHKAGFEHSELWFQCFNFGSLVALKAE  258 (261)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCT
T ss_pred             HHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEcC
Confidence            99999999999998887653 4456777888875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.89  E-value=7.3e-22  Score=181.65  Aligned_cols=166  Identities=15%  Similarity=0.075  Sum_probs=133.6

Q ss_pred             HHHHHHhhc----CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          165 EFELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       165 ~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ..+.+.+.+    ...++.+|||+|||+|.++..+++.. +.+++|+|+|+.+++.|++++...  +...++.++++|+.
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~  142 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA--GLADNITVKYGSFL  142 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH--TCTTTEEEEECCTT
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEEcCcc
Confidence            345666666    66678999999999999999999872 249999999999999999988765  22457999999999


Q ss_pred             CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                      .+|+++++||+|++..+++|++++..+++++.++|||||++++.++........ .....+.....        ...+.+
T Consensus       143 ~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~  213 (297)
T 2o57_A          143 EIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDK-SSIQPILDRIK--------LHDMGS  213 (297)
T ss_dssp             SCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCG-GGGHHHHHHHT--------CSSCCC
T ss_pred             cCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCch-HHHHHHHHHhc--------CCCCCC
Confidence            999989999999999999999999999999999999999999999876543221 12222222211        234679


Q ss_pred             HHHHHHHHHHCCCEEEEEEEec
Q 018003          321 FDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      ..++.++++++||++++.....
T Consensus       214 ~~~~~~~l~~aGf~~~~~~~~~  235 (297)
T 2o57_A          214 LGLYRSLAKECGLVTLRTFSRP  235 (297)
T ss_dssp             HHHHHHHHHHTTEEEEEEEECH
T ss_pred             HHHHHHHHHHCCCeEEEEEECc
Confidence            9999999999999998876543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.89  E-value=5.2e-22  Score=174.28  Aligned_cols=166  Identities=17%  Similarity=0.180  Sum_probs=138.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +.+.+.+...++.+|||+|||+|.++..+++.+ +..+++|+|+|+.+++.+++++...   ...++.++.+|+..++++
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~  103 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL---GLKNVEVLKSEENKIPLP  103 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH---TCTTEEEEECBTTBCSSC
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEecccccCCCC
Confidence            456666677778899999999999999999885 5669999999999999999998776   134799999999999988


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|++..+++|++++..+++++.++|||||.+++.++......                 .... +..+++.+++.
T Consensus       104 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~-----------------~~~~-~~~~~~~~~~~  165 (219)
T 3dh0_A          104 DNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERD-----------------KGPP-PEEVYSEWEVG  165 (219)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCS-----------------SSCC-GGGSCCHHHHH
T ss_pred             CCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccc-----------------cCCc-hhcccCHHHHH
Confidence            89999999999999999999999999999999999999988764321                 1111 45678999999


Q ss_pred             HHHHHCCCEEEEEEEecee-EEEEeeCcc
Q 018003          326 RIFRQFQLVVNLKLFYGHI-QHYIVKIPS  353 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g~~-~~~~~~kp~  353 (362)
                      ++++++||++++....+.. ..++.+|+.
T Consensus       166 ~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~  194 (219)
T 3dh0_A          166 LILEDAGIRVGRVVEVGKYCFGVYAMIVK  194 (219)
T ss_dssp             HHHHHTTCEEEEEEEETTTEEEEEEECC-
T ss_pred             HHHHHCCCEEEEEEeeCCceEEEEEEecc
Confidence            9999999999887776544 455556653

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.89  E-value=5.9e-22  Score=175.78  Aligned_cols=185  Identities=12%  Similarity=0.131  Sum_probs=139.3

Q ss_pred             HHHHHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ....+.+...+. ..++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...     .++.++++|+..
T Consensus        29 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~  103 (234)
T 3dtn_A           29 DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN-----LKVKYIEADYSK  103 (234)
T ss_dssp             HHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC-----TTEEEEESCTTT
T ss_pred             HHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC-----CCEEEEeCchhc
Confidence            334456666665 45678999999999999999999977779999999999999999987654     389999999999


Q ss_pred             CCCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh-----------hc
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF-----------LD  308 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~-----------~~  308 (362)
                      ++++ ++||+|++..+++|++++.  .+++++.++|||||++++.++....................           ..
T Consensus       104 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (234)
T 3dtn_A          104 YDFE-EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAG  182 (234)
T ss_dssp             CCCC-SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTT
T ss_pred             cCCC-CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHH
Confidence            9877 8999999999999998776  59999999999999999999876543211111111110000           00


Q ss_pred             ccccccccccCCHHHHHHHHHHCCCEEEEEEEe-ceeEEEEeeCccc
Q 018003          309 LKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY-GHIQHYIVKIPSL  354 (362)
Q Consensus       309 ~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~-g~~~~~~~~kp~~  354 (362)
                      +.... +...++.+++.++|+++||+.++.... ..+..+...++..
T Consensus       183 ~~~~~-~~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~  228 (234)
T 3dtn_A          183 YERSK-LDKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTEG  228 (234)
T ss_dssp             C-----CCCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC--
T ss_pred             HHhcc-cccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEeccc
Confidence            01112 667789999999999999999877654 4457777777653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.89  E-value=1e-22  Score=178.22  Aligned_cols=183  Identities=16%  Similarity=0.185  Sum_probs=140.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ...+.+.+.+...++ +|||+|||+|.++..+++. +..+++|+|+|+.+++.|++++...  +...++.++++|+..++
T Consensus        31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~  106 (219)
T 3dlc_A           31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADA--NLNDRIQIVQGDVHNIP  106 (219)
T ss_dssp             HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECBTTBCS
T ss_pred             HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhc--cccCceEEEEcCHHHCC
Confidence            445666777766555 9999999999999999998 4469999999999999999998775  22458999999999999


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhH-HHHHhhhhcc-cccccccccCCH
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR-LLRQVCFLDL-KIVGFSIPVLGF  321 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~s~  321 (362)
                      +++++||+|++..+++|++++..+++++.++|||||.+++.++....  ....... ....... .+ .....+..+++.
T Consensus       107 ~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  183 (219)
T 3dlc_A          107 IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK--ELRDSISAEMIRKNP-DWKEFNRKNISQENV  183 (219)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH--HHHHHHHHHHHHHCT-THHHHHHHHSSHHHH
T ss_pred             CCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH--HHHHHHHHHHHHhHH-HHHhhhhhccccCCH
Confidence            98999999999999999999999999999999999999998765432  1111111 1111100 00 000014566789


Q ss_pred             HHHHHHHHHCCCEEEEEEEeceeEEEEeeCcc
Q 018003          322 DDLKRIFRQFQLVVNLKLFYGHIQHYIVKIPS  353 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~kp~  353 (362)
                      +++.++|+++||++++........+...+|+.
T Consensus       184 ~~~~~~l~~aGf~~v~~~~~~~~~~~~~~k~~  215 (219)
T 3dlc_A          184 ERFQNVLDEIGISSYEIILGDEGFWIIISKTD  215 (219)
T ss_dssp             HHHHHHHHHHTCSSEEEEEETTEEEEEEBCCS
T ss_pred             HHHHHHHHHcCCCeEEEEecCCceEEEEeccc
Confidence            99999999999999888877777777777764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.89  E-value=1.2e-21  Score=177.84  Aligned_cols=168  Identities=23%  Similarity=0.276  Sum_probs=135.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.+++++...  +...++.++.+|+..+|++
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAA--GLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEECccccCCCC
Confidence            4566777777788999999999999999998864 469999999999999999988765  2235799999999999998


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|++..+++|++++..+++++.++|||||++++.++......  ..........+.   ...+ +..+++.+++.
T Consensus       127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~--~~~~~~~~~~~~---~~~~-~~~~~~~~~~~  200 (273)
T 3bus_A          127 DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPV--EGAKKEAVDAFR---AGGG-VLSLGGIDEYE  200 (273)
T ss_dssp             TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCC--CHHHHHHHHHHH---HHHT-CCCCCCHHHHH
T ss_pred             CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCC--ChhHHHHHHHHH---hhcC-ccCCCCHHHHH
Confidence            89999999999999999999999999999999999999998764321  111111111111   1112 56789999999


Q ss_pred             HHHHHCCCEEEEEEEec
Q 018003          326 RIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g  342 (362)
                      ++++++||++++....+
T Consensus       201 ~~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          201 SDVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHHHTTCEEEEEEECH
T ss_pred             HHHHHcCCeEEEEEECc
Confidence            99999999998776654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.89  E-value=8.3e-22  Score=175.69  Aligned_cols=165  Identities=19%  Similarity=0.238  Sum_probs=134.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++...   ...++.++++|++.+|+++
T Consensus        11 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEK---GVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHH---TCCSEEEEECBTTBCCSCT
T ss_pred             chHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc---CCCCeEEEecccccCCCCC
Confidence            4556677778899999999999999999999876  9999999999999999988765   1357999999999999988


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      ++||+|++..+++|++|+..+++++.++|||||++++.++.....    +....+...... ..... |...++.+++.+
T Consensus        86 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~  159 (239)
T 1xxl_A           86 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFVNHLNR-LRDPS-HVRESSLSEWQA  159 (239)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHHHHHHH-HHCTT-CCCCCBHHHHHH
T ss_pred             CcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC----hhHHHHHHHHHH-hcccc-ccCCCCHHHHHH
Confidence            999999999999999999999999999999999999998875432    222222221110 01122 677889999999


Q ss_pred             HHHHCCCEEEEEEEec
Q 018003          327 IFRQFQLVVNLKLFYG  342 (362)
Q Consensus       327 ll~~~Gf~~v~~~~~g  342 (362)
                      +|+++||+++......
T Consensus       160 ll~~aGf~~~~~~~~~  175 (239)
T 1xxl_A          160 MFSANQLAYQDIQKWN  175 (239)
T ss_dssp             HHHHTTEEEEEEEEEE
T ss_pred             HHHHCCCcEEEEEeec
Confidence            9999999987766543

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.89  E-value=1.9e-22  Score=177.14  Aligned_cols=175  Identities=17%  Similarity=0.139  Sum_probs=129.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+++.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.+++++.       .++.++++|+..++++ +
T Consensus        36 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~-------~~~~~~~~d~~~~~~~-~  105 (220)
T 3hnr_A           36 DILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLP-------KEFSITEGDFLSFEVP-T  105 (220)
T ss_dssp             HHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSC-------TTCCEESCCSSSCCCC-S
T ss_pred             HHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCC-------CceEEEeCChhhcCCC-C
Confidence            444444445688999999999999999999865  99999999999999998742       3788999999999887 8


Q ss_pred             cceEEEecccccCCCCHHH--HHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          248 SIDAVHAGAAIHCWSSPST--GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~--~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +||+|++..+++|++++..  +|+++.++|||||.+++.++...............................+++.+++.
T Consensus       106 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (220)
T 3hnr_A          106 SIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQ  185 (220)
T ss_dssp             CCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHH
T ss_pred             CeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHH
Confidence            9999999999999999977  99999999999999999998765322111111111111100000001134567999999


Q ss_pred             HHHHHCCCEEEEEEEeceeEEEEeeCc
Q 018003          326 RIFRQFQLVVNLKLFYGHIQHYIVKIP  352 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g~~~~~~~~kp  352 (362)
                      ++|+++||+++.....+.......+++
T Consensus       186 ~~l~~aGf~v~~~~~~~~~w~~~~~~~  212 (220)
T 3hnr_A          186 TIFENNGFHVTFTRLNHFVWVMEATKQ  212 (220)
T ss_dssp             HHHHHTTEEEEEEECSSSEEEEEEEEC
T ss_pred             HHHHHCCCEEEEeeccceEEEEeehhh
Confidence            999999998877666554444444444

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.88  E-value=7.1e-22  Score=178.32  Aligned_cols=167  Identities=13%  Similarity=0.110  Sum_probs=135.9

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ........+.+.+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++....     .++.++++|+.
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~  112 (266)
T 3ujc_A           39 GGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGN-----NKIIFEANDIL  112 (266)
T ss_dssp             THHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSC-----TTEEEEECCTT
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcC-----CCeEEEECccc
Confidence            334556777888877788999999999999999999973 349999999999999999875432     68999999999


Q ss_pred             CCCCCCCcceEEEecccccCC--CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccccc
Q 018003          241 RLPFASSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPV  318 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~--~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (362)
                      .+|+++++||+|++..+++|+  +++..+++++.++|||||.+++.++..................        . +..+
T Consensus       113 ~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~  183 (266)
T 3ujc_A          113 TKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQ--------R-KYTL  183 (266)
T ss_dssp             TCCCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHHHHHHH--------H-TCCC
T ss_pred             cCCCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHHHHHhc--------C-CCCC
Confidence            999989999999999999999  7889999999999999999999998765422222222221111        1 5678


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEEec
Q 018003          319 LGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       319 ~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      ++.+++.++++++||++++....+
T Consensus       184 ~~~~~~~~~l~~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          184 ITVEEYADILTACNFKNVVSKDLS  207 (266)
T ss_dssp             CCHHHHHHHHHHTTCEEEEEEECH
T ss_pred             CCHHHHHHHHHHcCCeEEEEEeCC
Confidence            899999999999999998876544

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.88  E-value=1.2e-21  Score=176.08  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=134.5

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ......+.+...+...++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++++..  +...++.++++|+.
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~--~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEEL--GVSERVHFIHNDAA   96 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCCT
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc--CCCcceEEEECChH
Confidence            335556778888887889999999999999999999874 359999999999999999988765  22357999999999


Q ss_pred             CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                      .+++ +++||+|++..+++|++++..+|+++.++|||||++++.++..........    +...+    .... +..+++
T Consensus        97 ~~~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~----~~~~~----~~~~-~~~~~~  166 (256)
T 1nkv_A           97 GYVA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE----IAQAC----GVSS-TSDFLT  166 (256)
T ss_dssp             TCCC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH----HHHTT----TCSC-GGGSCC
T ss_pred             hCCc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHH----HHHHH----hccc-ccccCC
Confidence            9887 789999999999999999999999999999999999999886543211111    11111    1112 557889


Q ss_pred             HHHHHHHHHHCCCEEEEEEE
Q 018003          321 FDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      ..++.++++++||++++...
T Consensus       167 ~~~~~~~l~~aGf~~~~~~~  186 (256)
T 1nkv_A          167 LPGLVGAFDDLGYDVVEMVL  186 (256)
T ss_dssp             HHHHHHHHHTTTBCCCEEEE
T ss_pred             HHHHHHHHHHCCCeeEEEEe
Confidence            99999999999998877543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.88  E-value=4.2e-21  Score=173.86  Aligned_cols=169  Identities=14%  Similarity=0.153  Sum_probs=134.9

Q ss_pred             CCcHHHHHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          160 PGPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      +........+...+. ..++.+|||||||+|.++..+++. +..+|+|+|+|+.+++.|+++++..  +...++.++++|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d  104 (267)
T 3kkz_A           28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS--GLQNRVTGIVGS  104 (267)
T ss_dssp             SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECC
T ss_pred             CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc--CCCcCcEEEEcC
Confidence            344555666677766 567889999999999999999998 4569999999999999999998765  224579999999


Q ss_pred             CCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccccc
Q 018003          239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPV  318 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (362)
                      +..+|+++++||+|++..+++|+ ++..+++++.++|||||++++.++...........    ...+.   .  . ...+
T Consensus       105 ~~~~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~----~~~~~---~--~-~~~~  173 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEI----NDFWM---D--A-YPEI  173 (267)
T ss_dssp             TTSCCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHH----HHHHH---H--H-CTTC
T ss_pred             hhhCCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHH----HHHHH---H--h-CCCC
Confidence            99999888999999999999999 99999999999999999999998875332222211    11111   0  1 2356


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEEec
Q 018003          319 LGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       319 ~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      .+..++.++++++||++++....+
T Consensus       174 ~~~~~~~~~l~~aGf~~v~~~~~~  197 (267)
T 3kkz_A          174 DTIPNQVAKIHKAGYLPVATFILP  197 (267)
T ss_dssp             EEHHHHHHHHHHTTEEEEEEEECC
T ss_pred             CCHHHHHHHHHHCCCEEEEEEECC
Confidence            789999999999999998876654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.88  E-value=5.8e-21  Score=171.71  Aligned_cols=169  Identities=13%  Similarity=0.148  Sum_probs=134.1

Q ss_pred             CCcHHHHHHHHhhc-CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          160 PGPEKEFELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       160 ~~~~~~~~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      +........+...+ ...++.+|||+|||+|.++..+++.++ .+++|+|+|+.+++.+++++...  +...++.++++|
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~~~~d  104 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKA--NCADRVKGITGS  104 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECC
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECC
Confidence            44455566666666 445678999999999999999999975 49999999999999999998775  223459999999


Q ss_pred             CCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccccc
Q 018003          239 ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPV  318 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (362)
                      +..+|+++++||+|++..+++|+ ++..+++++.++|||||++++.+++.............+...          ...+
T Consensus       105 ~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~  173 (257)
T 3f4k_A          105 MDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDA----------YPEI  173 (257)
T ss_dssp             TTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHHH----------CTTC
T ss_pred             hhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHHh----------CCCC
Confidence            99999888999999999999999 899999999999999999999998643322221111111111          2346


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEEec
Q 018003          319 LGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       319 ~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      .+..++.++++++||+++......
T Consensus       174 ~~~~~~~~~l~~aGf~~v~~~~~~  197 (257)
T 3f4k_A          174 SVIPTCIDKMERAGYTPTAHFILP  197 (257)
T ss_dssp             CBHHHHHHHHHHTTEEEEEEEECC
T ss_pred             CCHHHHHHHHHHCCCeEEEEEECC
Confidence            789999999999999998866544

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.88  E-value=4.3e-21  Score=177.91  Aligned_cols=164  Identities=15%  Similarity=0.097  Sum_probs=134.2

Q ss_pred             HHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      .+.+.+.+. ..++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.|++++...  +...++.++++|+..+|+
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~  181 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRAREL--RIDDHVRSRVCNMLDTPF  181 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CCCCceEEEECChhcCCC
Confidence            355677776 6678999999999999999999882 249999999999999999998775  223579999999999998


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCC-cchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      ++++||+|++..+++|+ ++..+++++.++|||||++++.++...... ....+...+....         ...+++.++
T Consensus       182 ~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~s~~~  251 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHF---------ECNIHSRRE  251 (312)
T ss_dssp             CTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHH---------TCCCCBHHH
T ss_pred             CCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhh---------cCCCCCHHH
Confidence            88999999999999999 699999999999999999999998775432 2222222222221         235789999


Q ss_pred             HHHHHHHCCCEEEEEEEec
Q 018003          324 LKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g  342 (362)
                      +.++++++||++++...++
T Consensus       252 ~~~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          252 YLRAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             HHHHHHTTTEEEEEEEECH
T ss_pred             HHHHHHHCCCEEEEEEeCC
Confidence            9999999999998887765

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.88  E-value=8.8e-22  Score=178.51  Aligned_cols=179  Identities=22%  Similarity=0.333  Sum_probs=128.4

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCCCCCCcCCCCccchhcccCchhhHHHhhhh
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~  150 (362)
                      .+.||.|++.+....           ..++|++|+.++...+||++++...........  ...+.+.           .
T Consensus         2 ~~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~--~~~~~~~-----------~   57 (269)
T 1p91_A            2 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPG--DSAEMMQ-----------A   57 (269)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCS--SSHHHHH-----------H
T ss_pred             cccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCCC--CCHHHHH-----------H
Confidence            378999998876533           579999999998888999988765332111110  0000000           0


Q ss_pred             hhhhccCCCCCc--HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003          151 RQNFVWGGFPGP--EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (362)
Q Consensus       151 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  228 (362)
                      +..+...+++.+  ....+.+...+. .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|+++        
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~--------  128 (269)
T 1p91_A           58 RRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------  128 (269)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh--------
Confidence            122222333222  122233333332 457899999999999999999985456999999999999999886        


Q ss_pred             CCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       229 ~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ..++.+..+|+..+|+++++||+|++..+..       .++++.++|||||++++.++..+
T Consensus       129 ~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          129 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             CTTSEEEECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCcEEEEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence            3578899999999998889999999877632       48999999999999999998764

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.87  E-value=2.3e-21  Score=172.72  Aligned_cols=156  Identities=18%  Similarity=0.252  Sum_probs=127.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ..+.+...+.  ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++.      ...++.++++|+..+++
T Consensus        43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~d~~~~~~  112 (242)
T 3l8d_A           43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERG------EGPDLSFIKGDLSSLPF  112 (242)
T ss_dssp             HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTT------CBTTEEEEECBTTBCSS
T ss_pred             HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhc------ccCCceEEEcchhcCCC
Confidence            3456666665  478999999999999999999865  9999999999999999863      24689999999999998


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++++||+|++..+++|++++..+++++.++|||||++++.++..........    .....    .... +...++..++
T Consensus       113 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~----~~~~~----~~~~-~~~~~~~~~~  183 (242)
T 3l8d_A          113 ENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS----YPRLY----GKDV-VCNTMMPWEF  183 (242)
T ss_dssp             CTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGG----GGGGG----TCCC-SSCCCCHHHH
T ss_pred             CCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhh----hhhhc----cccc-cccCCCHHHH
Confidence            8999999999999999999999999999999999999999987643211111    11111    1222 5677999999


Q ss_pred             HHHHHHCCCEEEEEE
Q 018003          325 KRIFRQFQLVVNLKL  339 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~  339 (362)
                      .++++++||++++..
T Consensus       184 ~~~l~~~Gf~~~~~~  198 (242)
T 3l8d_A          184 EQLVKEQGFKVVDGI  198 (242)
T ss_dssp             HHHHHHTTEEEEEEE
T ss_pred             HHHHHHcCCEEEEee
Confidence            999999999988765

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.87  E-value=1.8e-21  Score=173.65  Aligned_cols=150  Identities=12%  Similarity=0.077  Sum_probs=119.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||||||+|.++..+++.++  +++|+|+|+.+++.|++++.       .++.++++|+..+ +++++||+|++.+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~-------~~v~~~~~d~~~~-~~~~~fD~v~~~~  111 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLK-------DGITYIHSRFEDA-QLPRRYDNIVLTH  111 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSC-------SCEEEEESCGGGC-CCSSCEEEEEEES
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhh-------CCeEEEEccHHHc-CcCCcccEEEEhh
Confidence            567999999999999999999887  89999999999999998731       1799999999887 4678999999999


Q ss_pred             cccCCCCHHHHHHHHH-hhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhc-----c-cccccccccCCHHHHHHHHH
Q 018003          257 AIHCWSSPSTGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLD-----L-KIVGFSIPVLGFDDLKRIFR  329 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~-r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~s~~~l~~ll~  329 (362)
                      ++||++|+..+|+++. ++|||||++++.+++.....   .........+...     . .... |..+++.+++.++|+
T Consensus       112 ~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~  187 (250)
T 2p7i_A          112 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVS---RQIAVKMGIISHNSAVTEAEFAHG-HRCTYALDTLERDAS  187 (250)
T ss_dssp             CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHH---HHHHHHTTSSSSTTCCCHHHHHTT-CCCCCCHHHHHHHHH
T ss_pred             HHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChHHHH---HHHHHHcCccccchhccccccccc-ccccCCHHHHHHHHH
Confidence            9999999999999999 99999999999998764311   1000000000000     0 0122 677899999999999


Q ss_pred             HCCCEEEEEEE
Q 018003          330 QFQLVVNLKLF  340 (362)
Q Consensus       330 ~~Gf~~v~~~~  340 (362)
                      ++||++++...
T Consensus       188 ~~Gf~~~~~~~  198 (250)
T 2p7i_A          188 RAGLQVTYRSG  198 (250)
T ss_dssp             HTTCEEEEEEE
T ss_pred             HCCCeEEEEee
Confidence            99999887753

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.87  E-value=2e-21  Score=177.26  Aligned_cols=162  Identities=20%  Similarity=0.257  Sum_probs=126.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.|++.++++        ..++.++++|+..+|+ ++
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~  116 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQN--------YPHLHFDVADARNFRV-DK  116 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHH--------CTTSCEEECCTTTCCC-SS
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhh--------CCCCEEEECChhhCCc-CC
Confidence            45556666678899999999999999999844  5999999999999999986        3578899999999887 57


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh---hcccccccccccCCHHHH
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF---LDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~l  324 (362)
                      +||+|++..+++|++|+..+++++.++|||||++++.++.....   ..+...+.....   ........+..+++.+++
T Consensus       117 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (279)
T 3ccf_A          117 PLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNI---KYILEALYNALETLGIHNPQALNPWYFPSIGEY  193 (279)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTT---HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHH
T ss_pred             CcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcch---HHHHHHHHHHHHhcCCccccCcCceeCCCHHHH
Confidence            89999999999999999999999999999999999998875432   122222111111   000111114567899999


Q ss_pred             HHHHHHCCCEEEEEEEece
Q 018003          325 KRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g~  343 (362)
                      .++|+++||+++.......
T Consensus       194 ~~~l~~aGf~~~~~~~~~~  212 (279)
T 3ccf_A          194 VNILEKQGFDVTYAALFNR  212 (279)
T ss_dssp             HHHHHHHTEEEEEEEEEEC
T ss_pred             HHHHHHcCCEEEEEEEecc
Confidence            9999999999887665543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.86  E-value=4.3e-21  Score=174.51  Aligned_cols=170  Identities=18%  Similarity=0.169  Sum_probs=131.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.......++.+|||||||+|.++..+++.++..+++|+|+++.+++.+++++...   ...++.++.+|+..+++++
T Consensus        27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~  103 (276)
T 3mgg_A           27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN---GIKNVKFLQANIFSLPFED  103 (276)
T ss_dssp             HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGCCSCT
T ss_pred             HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCCCcEEEEcccccCCCCC
Confidence            3444444456788999999999999999999977789999999999999999988765   2357999999999999889


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCC--cchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++||+|++..+++|++++..+++++.++|||||++++.++......  +..+............ .... +...++..++
T Consensus       104 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~l  181 (276)
T 3mgg_A          104 SSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRV-QAYM-KGNSLVGRQI  181 (276)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHH-HHHT-TCCTTGGGGH
T ss_pred             CCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHH-HHhc-CCCcchHHHH
Confidence            9999999999999999999999999999999999999987653221  1111111111111100 0011 3455677899


Q ss_pred             HHHHHHCCCEEEEEEEe
Q 018003          325 KRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~  341 (362)
                      ..+|+++||++++....
T Consensus       182 ~~~l~~aGf~~v~~~~~  198 (276)
T 3mgg_A          182 YPLLQESGFEKIRVEPR  198 (276)
T ss_dssp             HHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHCCCCeEEEeeE
Confidence            99999999998877644

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.86  E-value=3.9e-21  Score=175.79  Aligned_cols=171  Identities=15%  Similarity=0.101  Sum_probs=128.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FAS  246 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~  246 (362)
                      .+...+... +.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|++++...  +...++.++++|+..++ +.+
T Consensus        60 ~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~  134 (285)
T 4htf_A           60 RVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAK--GVSDNMQFIHCAAQDVASHLE  134 (285)
T ss_dssp             HHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC---CCGGGEEEEESCGGGTGGGCS
T ss_pred             HHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCCcceEEEEcCHHHhhhhcC
Confidence            344444443 67999999999999999999865  9999999999999999988765  12368999999999887 778


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhh---hHHHHHhhhhcccccccccccCCHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      ++||+|++..+++|++++..+++++.++|||||++++.+++..........   ...+.............+..+++.++
T Consensus       135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDPTQ  214 (285)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHTTCCCC----CCCSCCBCHHH
T ss_pred             CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcCHHHHhhhccccccccCCCCCCCCHHH
Confidence            999999999999999999999999999999999999999875321000000   00111110000001111457789999


Q ss_pred             HHHHHHHCCCEEEEEEEece
Q 018003          324 LKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +.++|+++||++++......
T Consensus       215 l~~~l~~aGf~v~~~~~~~~  234 (285)
T 4htf_A          215 VYLWLEEAGWQIMGKTGVRV  234 (285)
T ss_dssp             HHHHHHHTTCEEEEEEEESS
T ss_pred             HHHHHHHCCCceeeeeeEEE
Confidence            99999999999988776543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.86  E-value=3.2e-21  Score=167.30  Aligned_cols=141  Identities=11%  Similarity=0.108  Sum_probs=121.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++        ..++.++++|+..+++++++||+|++..+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQT--------HPSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHH--------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHh--------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence            67999999999999999999865  999999999999999987        46789999999999988899999999999


Q ss_pred             ccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEE
Q 018003          258 IHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVV  335 (362)
Q Consensus       258 l~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~  335 (362)
                      ++|++  ++..+++++.++|||||.+++.++........               .....+..+++.+++.++|+++||++
T Consensus       112 l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~Gf~~  176 (203)
T 3h2b_A          112 LIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPM---------------YHPVATAYRWPLPELAQALETAGFQV  176 (203)
T ss_dssp             STTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEE---------------CCSSSCEEECCHHHHHHHHHHTTEEE
T ss_pred             HhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhh---------------hchhhhhccCCHHHHHHHHHHCCCcE
Confidence            99997  88999999999999999999999876531100               11111566789999999999999999


Q ss_pred             EEEEEece
Q 018003          336 NLKLFYGH  343 (362)
Q Consensus       336 v~~~~~g~  343 (362)
                      ++......
T Consensus       177 ~~~~~~~~  184 (203)
T 3h2b_A          177 TSSHWDPR  184 (203)
T ss_dssp             EEEEECTT
T ss_pred             EEEEecCC
Confidence            88877654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=1.9e-20  Score=168.36  Aligned_cols=160  Identities=13%  Similarity=0.016  Sum_probs=124.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.++++        ..++.++++|+..++ +
T Consensus        22 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~-~   92 (259)
T 2p35_A           22 ARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR--------LPNTNFGKADLATWK-P   92 (259)
T ss_dssp             HHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH--------STTSEEEECCTTTCC-C
T ss_pred             HHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh--------CCCcEEEECChhhcC-c
Confidence            3456666777778899999999999999999985556999999999999999986        357899999999988 7


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh--hhhcccc-cccccccCCHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV--CFLDLKI-VGFSIPVLGFD  322 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~~  322 (362)
                      +++||+|++..+++|++|+..+++++.++|||||++++.++..... .....+..+...  +...... ...+..+++.+
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (259)
T 2p35_A           93 AQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPS  171 (259)
T ss_dssp             SSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTS-HHHHHHHHHHHHSTTGGGC-------CCCCCHH
T ss_pred             cCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCc-HHHHHHHHHhcCcchHHHhccccccccCCCCHH
Confidence            8899999999999999999999999999999999999999864221 111122222211  1100000 01156789999


Q ss_pred             HHHHHHHHCCCEE
Q 018003          323 DLKRIFRQFQLVV  335 (362)
Q Consensus       323 ~l~~ll~~~Gf~~  335 (362)
                      ++.++|+++||++
T Consensus       172 ~~~~~l~~aGf~v  184 (259)
T 2p35_A          172 DYFNALSPKSSRV  184 (259)
T ss_dssp             HHHHHHGGGEEEE
T ss_pred             HHHHHHHhcCCce
Confidence            9999999999964

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.86  E-value=8.7e-21  Score=166.57  Aligned_cols=162  Identities=15%  Similarity=0.161  Sum_probs=121.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC---CCCEEEEEecCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP---KENFLLVRADISRLP  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---~~~~~~~~~d~~~~p  243 (362)
                      +.+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|++++... +..   ..++.++++|+...+
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~~~   97 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID-RLPEMQRKRISLFQSSLVYRD   97 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG-GSCHHHHTTEEEEECCSSSCC
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh-ccccccCcceEEEeCcccccc
Confidence            4555555555678999999999999999999887679999999999999999987654 000   128999999998888


Q ss_pred             CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          244 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      +.+++||+|++..+++|++++  ..+++++.++||||| +++.+++......+.. +..   ..   +.... |...++.
T Consensus        98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG-~~i~~~~~~~~~~~~~-~~~---~~---~~~~~-~~~~~~~  168 (219)
T 3jwg_A           98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQT-VIVSTPNKEYNFHYGN-LFE---GN---LRHRD-HRFEWTR  168 (219)
T ss_dssp             GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSE-EEEEEEBGGGGGCCCC-T-----------GGGC-CTTSBCH
T ss_pred             cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCE-EEEEccchhhhhhhcc-cCc---cc---ccccC-ceeeecH
Confidence            878899999999999999877  699999999999999 4555555321101100 000   00   01122 6677899


Q ss_pred             HHHH----HHHHHCCCEEEEE
Q 018003          322 DDLK----RIFRQFQLVVNLK  338 (362)
Q Consensus       322 ~~l~----~ll~~~Gf~~v~~  338 (362)
                      ++++    ++++++||++...
T Consensus       169 ~~l~~~~~~l~~~~Gf~v~~~  189 (219)
T 3jwg_A          169 KEFQTWAVKVAEKYGYSVRFL  189 (219)
T ss_dssp             HHHHHHHHHHHHHHTEEEEEE
T ss_pred             HHHHHHHHHHHHHCCcEEEEE
Confidence            9999    8899999976543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.85  E-value=1.5e-20  Score=164.80  Aligned_cols=161  Identities=17%  Similarity=0.141  Sum_probs=120.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCC----CCEEEEEecCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK----ENFLLVRADISR  241 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~----~~~~~~~~d~~~  241 (362)
                      .+.+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|++++...  ...    .++.++++|+..
T Consensus        18 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~v~~~~~d~~~   95 (217)
T 3jwh_A           18 MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL--RLPRNQWERLQLIQGALTY   95 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC--CCCHHHHTTEEEEECCTTS
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh--cCCcccCcceEEEeCCccc
Confidence            34556666556678999999999999999999887679999999999999999987654  111    279999999988


Q ss_pred             CCCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccC
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVL  319 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (362)
                      .+...++||+|++..+++|++++  ..+++++.++|||||++++ +++..    ....+..+...   .+.... |...+
T Consensus        96 ~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~-~~~~~----~~~~~~~~~~~---~~~~~~-~~~~~  166 (217)
T 3jwh_A           96 QDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVT-TPNIE----YNVKFANLPAG---KLRHKD-HRFEW  166 (217)
T ss_dssp             CCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEE-EEBHH----HHHHTC---------------CCSCB
T ss_pred             ccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEE-ccCcc----cchhhcccccc---cccccc-ccccc
Confidence            88777899999999999999877  7999999999999995554 44321    11111000000   011222 66778


Q ss_pred             CHHHHH----HHHHHCCCEEEE
Q 018003          320 GFDDLK----RIFRQFQLVVNL  337 (362)
Q Consensus       320 s~~~l~----~ll~~~Gf~~v~  337 (362)
                      +.+++.    ++++++||++..
T Consensus       167 ~~~~l~~~~~~~~~~~Gf~v~~  188 (217)
T 3jwh_A          167 TRSQFQNWANKITERFAYNVQF  188 (217)
T ss_dssp             CHHHHHHHHHHHHHHSSEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCceEEE
Confidence            999999    999999997754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.85  E-value=3.6e-20  Score=162.02  Aligned_cols=165  Identities=14%  Similarity=0.079  Sum_probs=120.6

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+.+.+. ..++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++.       ...++.++++|+..+ ++
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-------~~~~~~~~~~d~~~~-~~  104 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRH-------GLDNVEFRQQDLFDW-TP  104 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGG-------CCTTEEEEECCTTSC-CC
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhc-------CCCCeEEEecccccC-CC
Confidence            34444444 44578999999999999999999865  999999999999999881       136899999999888 67


Q ss_pred             CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH-HHHhhhhcccccc---cccccC
Q 018003          246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQVCFLDLKIVG---FSIPVL  319 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~  319 (362)
                      +++||+|++..+++|++++  ..+++++.++|||||.+++.+++..... ....... .............   ....++
T Consensus       105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (218)
T 3ou2_A          105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERR-LEQQDDSEPEVAVRRTLQDGRSFRIVKVFR  183 (218)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCC
T ss_pred             CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc-cchhhhcccccceeeecCCcchhhHhhcCC
Confidence            8899999999999999987  7999999999999999999998763221 1111100 0000000000000   024478


Q ss_pred             CHHHHHHHHHHCCCEEEEEEEec
Q 018003          320 GFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       320 s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      +.+++.++|+++||++......+
T Consensus       184 ~~~~~~~~l~~aGf~v~~~~~~~  206 (218)
T 3ou2_A          184 SPAELTERLTALGWSCSVDEVHP  206 (218)
T ss_dssp             CHHHHHHHHHHTTEEEEEEEEET
T ss_pred             CHHHHHHHHHHCCCEEEeeeccc
Confidence            99999999999999965554444

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.85  E-value=7.2e-21  Score=169.62  Aligned_cols=154  Identities=15%  Similarity=0.163  Sum_probs=124.0

Q ss_pred             HHHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-
Q 018003          165 EFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  242 (362)
Q Consensus       165 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  242 (362)
                      ....+...+. ..++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++           ++.++.+|+... 
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~-----------~~~~~~~d~~~~~   94 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEG-----------KFNVVKSDAIEYL   94 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHT-----------TSEEECSCHHHHH
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHh-----------hcceeeccHHHHh
Confidence            3445555544 24578999999999999999999865  89999999999999986           277888998775 


Q ss_pred             -CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccC
Q 018003          243 -PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVL  319 (362)
Q Consensus       243 -p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (362)
                       |+++++||+|++..+++|++++  ..+++++.++|||||++++.+++....   .    .....+    .... +..++
T Consensus        95 ~~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~----~~~~~~----~~~~-~~~~~  162 (240)
T 3dli_A           95 KSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---Y----SLINFY----IDPT-HKKPV  162 (240)
T ss_dssp             HTSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---H----HHHHHT----TSTT-CCSCC
T ss_pred             hhcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---H----HHHHHh----cCcc-ccccC
Confidence             7788999999999999999966  899999999999999999999875421   1    111111    2223 77889


Q ss_pred             CHHHHHHHHHHCCCEEEEEEEece
Q 018003          320 GFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       320 s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +.+++.++++++||++++...++.
T Consensus       163 ~~~~l~~~l~~aGf~~~~~~~~~~  186 (240)
T 3dli_A          163 HPETLKFILEYLGFRDVKIEFFEE  186 (240)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEEECC
T ss_pred             CHHHHHHHHHHCCCeEEEEEEecc
Confidence            999999999999999988877653

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.85  E-value=1.2e-20  Score=169.27  Aligned_cols=169  Identities=14%  Similarity=0.100  Sum_probs=126.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||+|||+|.++..+++.++ .+++|+|+|+.+++.|+++..      ..++.++++|+..+++++
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~  106 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTT------SPVVCYEQKAIEDIAIEP  106 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCC------CTTEEEEECCGGGCCCCT
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhc------cCCeEEEEcchhhCCCCC
Confidence            4566777766789999999999999999999875 389999999999999999754      358999999999999888


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcc-hhh-------------hHHHHHhhh-hcccc
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPF-------------SRLLRQVCF-LDLKI  311 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~-~~~-------------~~~~~~~~~-~~~~~  311 (362)
                      ++||+|++..+++|++++..+++++.++|||||.+++.++........ ..|             ......... ..+..
T Consensus       107 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (253)
T 3g5l_A          107 DAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLG  186 (253)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETT
T ss_pred             CCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeecc
Confidence            999999999999999999999999999999999999987754210000 000             000000000 00000


Q ss_pred             cccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          312 VGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       312 ~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      ........+.+++.++|+++||++++.....
T Consensus       187 ~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~~  217 (253)
T 3g5l_A          187 EDVQKYHRTVTTYIQTLLKNGFQINSVIEPE  217 (253)
T ss_dssp             EEEEEECCCHHHHHHHHHHTTEEEEEEECCC
T ss_pred             ccCccEecCHHHHHHHHHHcCCeeeeeecCC
Confidence            0112233499999999999999998876543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.84  E-value=1.4e-20  Score=172.89  Aligned_cols=154  Identities=12%  Similarity=0.023  Sum_probs=110.9

Q ss_pred             CCCCeEEEEcCccchHHH----HHHHhCCCCEE--EEEeCCHHHHHHHHHHHhhcCCCCCCCEEE--EEecCCCCC----
Q 018003          176 VLGGNIIDASCGSGLFSR----IFAKSGLFSLV--VALDYSENMLKQCYEFVQQESNFPKENFLL--VRADISRLP----  243 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~----~l~~~~~~~~v--~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~--~~~d~~~~p----  243 (362)
                      .++.+|||||||+|.++.    .+...++...+  +|+|+|++|++.|+++++...  ...++.+  ..++++.++    
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~  128 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTS--NLENVKFAWHKETSSEYQSRML  128 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCS--SCTTEEEEEECSCHHHHHHHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhcc--CCCcceEEEEecchhhhhhhhc
Confidence            457799999999997654    34444555544  999999999999999876531  1234444  455554443    


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                        +++++||+|++.+++||++|+..+|++++++|||||++++..+..+.     .+. .+............ +..+++.
T Consensus       129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~-~~~~~~~~~~~~~~-~~~~~~~  201 (292)
T 2aot_A          129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-----GWD-KLWKKYGSRFPQDD-LCQYITS  201 (292)
T ss_dssp             TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-----HHH-HHHHHHGGGSCCCT-TCCCCCH
T ss_pred             cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCc-----cHH-HHHHHHHHhccCCC-cccCCCH
Confidence              45789999999999999999999999999999999999999776432     111 11111111111112 5678999


Q ss_pred             HHHHHHHHHCCCEEEEE
Q 018003          322 DDLKRIFRQFQLVVNLK  338 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~  338 (362)
                      +++.++|+++||+.+..
T Consensus       202 ~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          202 DDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHCCCceEEE
Confidence            99999999999987753

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.84  E-value=1.5e-20  Score=163.55  Aligned_cols=151  Identities=15%  Similarity=0.091  Sum_probs=115.7

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-----C----CCCCCEEEEEecC
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----N----FPKENFLLVRADI  239 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~----~~~~~~~~~~~d~  239 (362)
                      +...+...++.+|||+|||+|..+..+++.|.  +|+|+|+|+.|++.|+++.+...     +    ....++.++++|+
T Consensus        14 ~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~   91 (203)
T 1pjz_A           14 YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   91 (203)
T ss_dssp             HHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc
Confidence            33444555688999999999999999999876  99999999999999998764310     0    0135899999999


Q ss_pred             CCCCCCC-CcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccc
Q 018003          240 SRLPFAS-SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSI  316 (362)
Q Consensus       240 ~~~p~~~-~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (362)
                      ..+++.+ ++||+|++..+++|+++.  ..+++++.++|||||++++.+......                  ...+ ..
T Consensus        92 ~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~------------------~~~~-~~  152 (203)
T 1pjz_A           92 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA------------------LLEG-PP  152 (203)
T ss_dssp             SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS------------------SSSS-CC
T ss_pred             ccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc------------------ccCC-CC
Confidence            9998765 789999999999999744  468999999999999966666543210                  0001 22


Q ss_pred             ccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          317 PVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       317 ~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      ..++.+++.+++++ ||++......
T Consensus       153 ~~~~~~el~~~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          153 FSVPQTWLHRVMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             CCCCHHHHHHTSCS-SEEEEEEEES
T ss_pred             CCCCHHHHHHHhcC-CcEEEEeccc
Confidence            34789999999998 9987665543

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.84  E-value=7.5e-20  Score=168.72  Aligned_cols=169  Identities=12%  Similarity=0.018  Sum_probs=129.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+.+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.|++++...  +...++.++.+|+..+   
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~---  134 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV--DSPRRKEVRIQGWEEF---  134 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHS--CCSSCEEEEECCGGGC---
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECCHHHc---
Confidence            45567777777899999999999999999998832 59999999999999999998775  2234799999999876   


Q ss_pred             CCcceEEEecccccCCCCH---------HHHHHHHHhhccCCcEEEEEEEccCCCCcchhh-------hHHHHHhhhhcc
Q 018003          246 SSSIDAVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-------SRLLRQVCFLDL  309 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~---------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  309 (362)
                      +++||+|++..+++|++||         ..+++++.++|||||++++.++...........       ......... .+
T Consensus       135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  213 (302)
T 3hem_A          135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFIL-TE  213 (302)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHH-HH
T ss_pred             CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHH-Hh
Confidence            6889999999999999887         699999999999999999998876432100000       000001111 11


Q ss_pred             cccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          310 KIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       310 ~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      .. + ...+.+.+++.++++++||++++....+.
T Consensus       214 ~~-p-~~~~~s~~~~~~~l~~aGf~~~~~~~~~~  245 (302)
T 3hem_A          214 IF-P-GGRLPRISQVDYYSSNAGWKVERYHRIGA  245 (302)
T ss_dssp             TC-T-TCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             cC-C-CCCCCCHHHHHHHHHhCCcEEEEEEeCch
Confidence            11 2 34568899999999999999988876554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.84  E-value=9.8e-20  Score=161.05  Aligned_cols=166  Identities=18%  Similarity=0.231  Sum_probs=126.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC--CCCCCEEEEEecCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVRADISRLPFA  245 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+...+.  ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.+++++....-  ....++.++.+|+..++++
T Consensus        23 ~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~   98 (235)
T 3sm3_A           23 IIHNYLQ--EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH   98 (235)
T ss_dssp             THHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC
T ss_pred             HHHHhCC--CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC
Confidence            3444444  478999999999999999999865  999999999999999998765410  0012689999999999988


Q ss_pred             CCcceEEEecccccCCCCHH---HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH-HHHhhhh-----cccc-----
Q 018003          246 SSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQVCFL-----DLKI-----  311 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~---~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~-----  311 (362)
                      +++||+|++..+++|++++.   .+++++.++|||||++++.++......   +.... ....+..     .+..     
T Consensus        99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (235)
T 3sm3_A           99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL---KLYRKRYLHDFPITKEEGSFLARDPET  175 (235)
T ss_dssp             TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS---HHHHHHHHHHHHHHCSTTEEEEECTTT
T ss_pred             CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH---HHHHHHhhhhccchhhhcceEeccccc
Confidence            99999999999999999998   899999999999999999998764321   11111 1111100     0000     


Q ss_pred             --cccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003          312 --VGFSIPVLGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       312 --~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                        ...+..+++.+++.++|+++||++++...
T Consensus       176 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~  206 (235)
T 3sm3_A          176 GETEFIAHHFTEKELVFLLTDCRFEIDYFRV  206 (235)
T ss_dssp             CCEEEEEECBCHHHHHHHHHTTTEEEEEEEE
T ss_pred             CCcceeeEeCCHHHHHHHHHHcCCEEEEEEe
Confidence              01245689999999999999998877654

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.84  E-value=1e-19  Score=166.43  Aligned_cols=168  Identities=15%  Similarity=0.103  Sum_probs=127.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+.+.+...++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.+++++...  +...++.++.+|+..+|  
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~--  127 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANS--ENLRSKRVLLAGWEQFD--  127 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTC--CCCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhc--CCCCCeEEEECChhhCC--
Confidence            4556667777788999999999999999998543 239999999999999999988764  22458999999998775  


Q ss_pred             CCcceEEEecccccCC--CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcc----hh---hhHHHHHhhhhccccccccc
Q 018003          246 SSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL----IP---FSRLLRQVCFLDLKIVGFSI  316 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~--~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~  316 (362)
                       ++||+|++..+++|+  .++..+++++.++|||||++++.++........    .+   .......... . ...+ ..
T Consensus       128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~-~~  203 (287)
T 1kpg_A          128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIV-T-EIFP-GG  203 (287)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHH-H-HTST-TC
T ss_pred             -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHH-h-eeCC-CC
Confidence             789999999999999  678999999999999999999999876432110    00   0001111111 0 1112 34


Q ss_pred             ccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          317 PVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       317 ~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      .+.+.+++.++++++||++++....+
T Consensus       204 ~~~s~~~~~~~l~~aGf~~~~~~~~~  229 (287)
T 1kpg_A          204 RLPSIPMVQECASANGFTVTRVQSLQ  229 (287)
T ss_dssp             CCCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             CCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            56799999999999999998877654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.84  E-value=4.9e-20  Score=166.01  Aligned_cols=157  Identities=17%  Similarity=0.202  Sum_probs=119.9

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      ...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++...    ..++.++++|+..+++++++||+|+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~  109 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAGV----DRKVQVVQADARAIPLPDESVHGVI  109 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTTS----CTTEEEEESCTTSCCSCTTCEEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc----CCceEEEEcccccCCCCCCCeeEEE
Confidence            345678999999999999999998864  9999999999999999987332    5789999999999998889999999


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh-cccccccccccCCHHHHHHHHHHCC
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL-DLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      +..+++|++|+..+++++.++|||||.+++.....+. .....+...+...... .+.... +..+++.+++.++|+++|
T Consensus       110 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~G  187 (263)
T 2yqz_A          110 VVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEA-SPEWTLQERWRAFAAEEGFPVER-GLHAKRLKEVEEALRRLG  187 (263)
T ss_dssp             EESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEECC-CHHHHHHHHHHHHHHHHTCCCCC-CHHHHHHHHHHHHHHHTT
T ss_pred             ECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCCCc-cHHHHHHHHHHHHHHHhCCCccc-ccccCCHHHHHHHHHHcC
Confidence            9999999999999999999999999999988332211 1100112212111110 001111 445788999999999999


Q ss_pred             CEEEEE
Q 018003          333 LVVNLK  338 (362)
Q Consensus       333 f~~v~~  338 (362)
                      |+++..
T Consensus       188 f~~~~~  193 (263)
T 2yqz_A          188 LKPRTR  193 (263)
T ss_dssp             CCCEEE
T ss_pred             CCcceE
Confidence            986654

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.84  E-value=6.4e-20  Score=167.76  Aligned_cols=170  Identities=12%  Similarity=0.079  Sum_probs=127.0

Q ss_pred             HHHHhhc-CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          167 ELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       167 ~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ..+.+.+ ...++.+|||+|||+|.++..+++..+ ..+++|+|+|+.+++.|++++...    ..++.++++|+..+++
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~   86 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIEL   86 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCC
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----CCceEEEEcchhhcCc
Confidence            3444333 455788999999999999999998865 369999999999999999998776    4489999999999887


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc-----CCCC---cchhh--hHHHHHhhhhccccccc
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV-----DGPF---NLIPF--SRLLRQVCFLDLKIVGF  314 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~-----~~~~---~~~~~--~~~~~~~~~~~~~~~~~  314 (362)
                       +++||+|++..+++|++|+..+++++.++|||||++++.+++.     ....   .....  +..+...+.......  
T Consensus        87 -~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  163 (284)
T 3gu3_A           87 -NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN--  163 (284)
T ss_dssp             -SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT--
T ss_pred             -CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhh--
Confidence             4689999999999999999999999999999999999998872     1000   00000  111111111000111  


Q ss_pred             ccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          315 SIPVLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       315 ~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      ...+.+...+.++|+++||+.++......
T Consensus       164 ~~~~~~~~~l~~~l~~aGF~~v~~~~~~~  192 (284)
T 3gu3_A          164 GKDGNIGMKIPIYLSELGVKNIECRVSDK  192 (284)
T ss_dssp             CCCTTGGGTHHHHHHHTTCEEEEEEECCC
T ss_pred             cccccHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            23456677899999999999988765443

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.84  E-value=1.1e-20  Score=159.12  Aligned_cols=142  Identities=15%  Similarity=0.168  Sum_probs=119.9

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f  249 (362)
                      .+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.+..+|   .++++++|
T Consensus        10 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~v~~~~~d---~~~~~~~~   76 (170)
T 3i9f_A           10 LPNIFEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK--------FDSVITLSDP---KEIPDNSV   76 (170)
T ss_dssp             HHHHHSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH--------CTTSEEESSG---GGSCTTCE
T ss_pred             HHhcCcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh--------CCCcEEEeCC---CCCCCCce
Confidence            3344455678999999999999999999875  999999999999999987        3688999999   67778899


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHH
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR  329 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~  329 (362)
                      |+|++..+++|++++..+++++.++|||||++++.++.......                 ... +...++.++++++++
T Consensus        77 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~~l~  138 (170)
T 3i9f_A           77 DFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGI-----------------GPP-LSIRMDEKDYMGWFS  138 (170)
T ss_dssp             EEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSS-----------------SSC-GGGCCCHHHHHHHTT
T ss_pred             EEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcccccc-----------------Cch-HhhhcCHHHHHHHHh
Confidence            99999999999999999999999999999999999887643211                 111 456689999999998


Q ss_pred             HCCCEEEEEEEecee
Q 018003          330 QFQLVVNLKLFYGHI  344 (362)
Q Consensus       330 ~~Gf~~v~~~~~g~~  344 (362)
                        ||++++....+..
T Consensus       139 --Gf~~~~~~~~~~~  151 (170)
T 3i9f_A          139 --NFVVEKRFNPTPY  151 (170)
T ss_dssp             --TEEEEEEECSSTT
T ss_pred             --CcEEEEccCCCCc
Confidence              9999988877643

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.84  E-value=2.5e-20  Score=168.31  Aligned_cols=160  Identities=18%  Similarity=0.130  Sum_probs=126.7

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.++++         .++.++++|++.+|
T Consensus        21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~---------~~~~~~~~d~~~~~   89 (261)
T 3ege_A           21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVH---------PQVEWFTGYAENLA   89 (261)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCC---------TTEEEECCCTTSCC
T ss_pred             HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhc---------cCCEEEECchhhCC
Confidence            345667777777778999999999999999999854  5999999999999988763         38999999999999


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      +++++||+|++..+++|++|+..+++++.++|| ||.+++.++......  ..+.........    . ..+..+.+.++
T Consensus        90 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~--~~~~~~~~~~~~----~-~~~~~~~~~~~  161 (261)
T 3ege_A           90 LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQ--RIWLYDYFPFLW----E-DALRFLPLDEQ  161 (261)
T ss_dssp             SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCC--CCGGGGTCHHHH----H-HHHTSCCHHHH
T ss_pred             CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhH--HHHHHHHHHHHh----h-hhhhhCCCHHH
Confidence            989999999999999999999999999999999 999999888754321  112211111110    0 11456778889


Q ss_pred             HHHHHHHCCCEEEEEEEece
Q 018003          324 LKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +. +|+++||+.+.......
T Consensus       162 ~~-~l~~aGF~~v~~~~~~~  180 (261)
T 3ege_A          162 IN-LLQENTKRRVEAIPFLL  180 (261)
T ss_dssp             HH-HHHHHHCSEEEEEECCE
T ss_pred             HH-HHHHcCCCceeEEEecC
Confidence            99 99999998887766543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.84  E-value=2.6e-20  Score=167.01  Aligned_cols=155  Identities=13%  Similarity=0.063  Sum_probs=124.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.+++++...     .++.++++|+..+++++
T Consensus        83 ~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~~~~  156 (254)
T 1xtp_A           83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCS
T ss_pred             HHHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccC-----CceEEEEccHHHCCCCC
Confidence            445555666678899999999999999998886 358999999999999999986543     57999999999988888


Q ss_pred             CcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++||+|++..+++|++  ++..+++++.++|||||++++.++.........              .... +..+++.+++
T Consensus       157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~--------------~~~~-~~~~~~~~~~  221 (254)
T 1xtp_A          157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV--------------DKED-SSLTRSDIHY  221 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE--------------ETTT-TEEEBCHHHH
T ss_pred             CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCccccee--------------cccC-CcccCCHHHH
Confidence            9999999999999995  478999999999999999999987543211000              0111 4456799999


Q ss_pred             HHHHHHCCCEEEEEEEec
Q 018003          325 KRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g  342 (362)
                      .++|+++||++++.....
T Consensus       222 ~~~l~~aGf~~~~~~~~~  239 (254)
T 1xtp_A          222 KRLFNESGVRVVKEAFQE  239 (254)
T ss_dssp             HHHHHHHTCCEEEEEECT
T ss_pred             HHHHHHCCCEEEEeeecC
Confidence            999999999998876543

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.83  E-value=6e-20  Score=163.03  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=120.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +..+....... +.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++...  ....++.++++|+..++ +
T Consensus        56 l~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~-~  129 (235)
T 3lcc_A           56 IVHLVDTSSLP-LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSS--PKAEYFSFVKEDVFTWR-P  129 (235)
T ss_dssp             HHHHHHTTCSC-CEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTS--GGGGGEEEECCCTTTCC-C
T ss_pred             HHHHHHhcCCC-CCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhcc--CCCcceEEEECchhcCC-C
Confidence            33444333333 45999999999999999987654  8999999999999999987652  11357999999999877 4


Q ss_pred             CCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      +++||+|++..+++|++  ++..+++++.++|||||.+++.++.....                   ..+ +...++.++
T Consensus       130 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-------------------~~~-~~~~~~~~~  189 (235)
T 3lcc_A          130 TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDH-------------------VGG-PPYKVDVST  189 (235)
T ss_dssp             SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCC-------------------CSC-SSCCCCHHH
T ss_pred             CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccccc-------------------CCC-CCccCCHHH
Confidence            56899999999999998  88899999999999999999987754321                   011 334588999


Q ss_pred             HHHHHHHCCCEEEEEEEec
Q 018003          324 LKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g  342 (362)
                      +.++++++||++++.....
T Consensus       190 ~~~~l~~~Gf~~~~~~~~~  208 (235)
T 3lcc_A          190 FEEVLVPIGFKAVSVEENP  208 (235)
T ss_dssp             HHHHHGGGTEEEEEEEECT
T ss_pred             HHHHHHHcCCeEEEEEecC
Confidence            9999999999988776543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.83  E-value=8.9e-20  Score=162.34  Aligned_cols=168  Identities=21%  Similarity=0.221  Sum_probs=125.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+...+...++.+|||+|||+|.++..+++.+. .+++|+|+|+.+++.++++...      .++.++++|+..+++++
T Consensus        33 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~------~~~~~~~~d~~~~~~~~  105 (243)
T 3bkw_A           33 PALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPD------TGITYERADLDKLHLPQ  105 (243)
T ss_dssp             HHHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCS------SSEEEEECCGGGCCCCT
T ss_pred             HHHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhccc------CCceEEEcChhhccCCC
Confidence            4566667766788999999999999999998853 3899999999999999986432      37999999999888888


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcch-hhhHH--------HHHhhh-----hccccc
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-PFSRL--------LRQVCF-----LDLKIV  312 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~-~~~~~--------~~~~~~-----~~~~~~  312 (362)
                      ++||+|++..+++|++++..+++++.++|||||++++.+++........ .|...        ......     ..+...
T Consensus       106 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (243)
T 3bkw_A          106 DSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK  185 (243)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred             CCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence            8999999999999999999999999999999999999987542100000 00000        000000     000000


Q ss_pred             ccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          313 GFSIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       313 ~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      ..+..+++.+++.++|+++||++++....
T Consensus       186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          186 GVVKHHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence            11344579999999999999999887654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.83  E-value=6.4e-20  Score=160.06  Aligned_cols=148  Identities=19%  Similarity=0.167  Sum_probs=120.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ..+..+...+.  ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++         ++.+..+|+..++
T Consensus        32 ~~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~---------~~~~~~~d~~~~~   98 (211)
T 3e23_A           32 ATLTKFLGELP--AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRL---------GRPVRTMLFHQLD   98 (211)
T ss_dssp             HHHHHHHTTSC--TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH---------TSCCEECCGGGCC
T ss_pred             HHHHHHHHhcC--CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhc---------CCceEEeeeccCC
Confidence            33444554444  478999999999999999999865  9999999999999999874         4567889998888


Q ss_pred             CCCCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          244 FASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                       .+++||+|++..+++|++  ++..+++++.++|||||++++..+.......                ...+.+..+++.
T Consensus        99 -~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----------------~~~~~~~~~~~~  161 (211)
T 3e23_A           99 -AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR----------------DKLARYYNYPSE  161 (211)
T ss_dssp             -CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE----------------CTTSCEECCCCH
T ss_pred             -CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc----------------cccchhccCCCH
Confidence             788999999999999998  7789999999999999999999876543210                011125678999


Q ss_pred             HHHHHHHHHCC-CEEEEEEEe
Q 018003          322 DDLKRIFRQFQ-LVVNLKLFY  341 (362)
Q Consensus       322 ~~l~~ll~~~G-f~~v~~~~~  341 (362)
                      +++.++++++| |++++....
T Consensus       162 ~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          162 EWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             HHHHHHHHHHCCCSEEEEEEE
T ss_pred             HHHHHHHHhCCCcEEEEEEec
Confidence            99999999999 988776543

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.83  E-value=3.1e-20  Score=167.16  Aligned_cols=113  Identities=27%  Similarity=0.341  Sum_probs=99.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      .+.++.|.+....  +.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++         ..++.++++|++++
T Consensus        27 ~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~---------~~~v~~~~~~~e~~   93 (257)
T 4hg2_A           27 RALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALR---------HPRVTYAVAPAEDT   93 (257)
T ss_dssp             HHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCC---------CTTEEEEECCTTCC
T ss_pred             HHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhh---------cCCceeehhhhhhh
Confidence            4556677766654  57999999999999999999876  99999999999998865         47899999999999


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      |+++++||+|++..++||+ ++..+++++.|+|||||+|++..+...
T Consensus        94 ~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A           94 GLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             CCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             cccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            9999999999999999776 788999999999999999999888654

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.83  E-value=7e-20  Score=174.56  Aligned_cols=158  Identities=20%  Similarity=0.221  Sum_probs=123.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcC----C-CCCCCEEEEEecCCCC------
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----N-FPKENFLLVRADISRL------  242 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~----~-~~~~~~~~~~~d~~~~------  242 (362)
                      ..++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.|+++++...    + ....++.++++|+..+      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            346789999999999999999887 356799999999999999999765320    0 1136899999999987      


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHH
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                      ++++++||+|+++.+++|++|+..+|+++.++|||||+|++.++..+...  ..........+.     .. ....++.+
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~--~~~~~~~~~~~~-----~~-~~~~~~~~  232 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL--SEAAQQDPILYG-----EC-LGGALYLE  232 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCC--CHHHHHCHHHHH-----TT-CTTCCBHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccccc--CHhHhhhHHHhh-----cc-cccCCCHH
Confidence            88889999999999999999999999999999999999999988765321  111111111111     11 34568889


Q ss_pred             HHHHHHHHCCCEEEEEEE
Q 018003          323 DLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~  340 (362)
                      ++.++|+++||+.++...
T Consensus       233 ~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          233 DFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHHHCCCceEEEEe
Confidence            999999999997765544

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.83  E-value=6.4e-20  Score=161.59  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=122.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC--CCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~p~  244 (362)
                      ..+.+.+. .++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.++++          ...++.+|+..  .++
T Consensus        23 ~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~----------~~~~~~~d~~~~~~~~   89 (230)
T 3cc8_A           23 PNLLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEK----------LDHVVLGDIETMDMPY   89 (230)
T ss_dssp             HHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTT----------SSEEEESCTTTCCCCS
T ss_pred             HHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHh----------CCcEEEcchhhcCCCC
Confidence            34555555 567899999999999999999884  5999999999999999874          23688999876  667


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH-Hhhhhc-c-cccccccccCCH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QVCFLD-L-KIVGFSIPVLGF  321 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~s~  321 (362)
                      ++++||+|++..+++|++++..+++++.++|||||.+++.+++....    ..+.... ..+... . .....|..+++.
T Consensus        90 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (230)
T 3cc8_A           90 EEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI----SVLAPLLAGNWTYTEYGLLDKTHIRFFTF  165 (230)
T ss_dssp             CTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH----HHHHHHHTTCCCCBSSSTTBTTCCCCCCH
T ss_pred             CCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH----HHHHHHhcCCceeccCCCCCcceEEEecH
Confidence            78899999999999999999999999999999999999999876421    1111111 111000 0 011226678999


Q ss_pred             HHHHHHHHHCCCEEEEEEEec
Q 018003          322 DDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      +++.++++++||++++.....
T Consensus       166 ~~~~~~l~~~Gf~~~~~~~~~  186 (230)
T 3cc8_A          166 NEMLRMFLKAGYSISKVDRVY  186 (230)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCeEEEEEecc
Confidence            999999999999988776544

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.83  E-value=2.3e-19  Score=156.50  Aligned_cols=136  Identities=25%  Similarity=0.308  Sum_probs=109.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..+   + ..+++|+|+|+.+++.++++.        .++.++++|+..+|+++++||+|++..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRA--------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHC--------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhC--------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            6789999999999999887   2 128999999999999999873        578899999999998889999999999


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      +++|++++..+++++.++|||||.+++.+++....     +................ |.++++.++++++|+  |
T Consensus       104 ~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          104 TLEFVEDVERVLLEARRVLRPGGALVVGVLEALSP-----WAALYRRLGEKGVLPWA-QARFLAREDLKALLG--P  171 (211)
T ss_dssp             CTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSH-----HHHHHHHHHHTTCTTGG-GCCCCCHHHHHHHHC--S
T ss_pred             hhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCc-----HHHHHHHHhhccCcccc-ccccCCHHHHHHHhc--C
Confidence            99999999999999999999999999999986532     11111111010011112 678899999999998  7

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.83  E-value=6e-20  Score=169.66  Aligned_cols=173  Identities=14%  Similarity=0.078  Sum_probs=128.3

Q ss_pred             CCCCeEEEEcCccchHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          176 VLGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      .++.+|||||||+|.++..++ ...+..+++|+|+|+.+++.|++++...  +...++.++++|+..++++ ++||+|++
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~-~~fD~v~~  193 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH--ALAGQITLHRQDAWKLDTR-EGYDLLTS  193 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEECCGGGCCCC-SCEEEEEC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECchhcCCcc-CCeEEEEE
Confidence            458899999999999999885 4456679999999999999999998764  2234599999999999887 89999999


Q ss_pred             cccccCCCCHHH---HHHHHHhhccCCcEEEEEEEccCCCCc-chhhh-----H---HHHHhhhhcccccccccccCCHH
Q 018003          255 GAAIHCWSSPST---GVAEISRVLRPGGVFVGTTYIVDGPFN-LIPFS-----R---LLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       255 ~~vl~h~~d~~~---~l~~i~r~LkpgG~li~~~~~~~~~~~-~~~~~-----~---~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                      +.+++|++++..   +++++.++|||||++++.++....... ...|.     .   ......... ........+++.+
T Consensus       194 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  272 (305)
T 3ocj_A          194 NGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTR-LIQPRWNALRTHA  272 (305)
T ss_dssp             CSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHH-TTCCSCCCCCCHH
T ss_pred             CChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHH-HHhhhhhccCCHH
Confidence            999999999986   799999999999999998866532111 11111     0   000111100 1111133668999


Q ss_pred             HHHHHHHHCCCEEEEEEEe--ceeEEEEeeCc
Q 018003          323 DLKRIFRQFQLVVNLKLFY--GHIQHYIVKIP  352 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~~--g~~~~~~~~kp  352 (362)
                      ++.++|+++||++++....  +.....+++||
T Consensus       273 ~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp  304 (305)
T 3ocj_A          273 QTRAQLEEAGFTDLRFEDDRARLFPTVIARKP  304 (305)
T ss_dssp             HHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred             HHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence            9999999999999887743  33355666665

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.83  E-value=2.3e-20  Score=168.52  Aligned_cols=166  Identities=16%  Similarity=0.169  Sum_probs=122.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|+++        ..++.++++|+..+++ +++||+|++..
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~~~fD~v~~~~  118 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRR--------NPDAVLHHGDMRDFSL-GRRFSAVTCMF  118 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTCCC-SCCEEEEEECT
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhh--------CCCCEEEECChHHCCc-cCCcCEEEEcC
Confidence            368999999999999999999876  999999999999999987        3478999999999887 78999999998


Q ss_pred             -cccCCC---CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhH-----------HHHH--------hhhhcc----
Q 018003          257 -AIHCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR-----------LLRQ--------VCFLDL----  309 (362)
Q Consensus       257 -vl~h~~---d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~-----------~~~~--------~~~~~~----  309 (362)
                       +++|++   ++..+++++.++|||||++++.++..........+..           .+..        .....+    
T Consensus       119 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (263)
T 3pfg_A          119 SSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAG  198 (263)
T ss_dssp             TGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             chhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEec
Confidence             999996   4558899999999999999997543322110000000           0000        000000    


Q ss_pred             -------cccccccccCCHHHHHHHHHHCCCEEEEEEEe-ceeEEEEeeCcc
Q 018003          310 -------KIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY-GHIQHYIVKIPS  353 (362)
Q Consensus       310 -------~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~-g~~~~~~~~kp~  353 (362)
                             .....+.++++.++++++|+++||++++.... +....++++||.
T Consensus       199 ~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a  250 (263)
T 3pfg_A          199 PDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA  250 (263)
T ss_dssp             TTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred             CCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence                   00011367899999999999999998876433 233677888874

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.83  E-value=1e-19  Score=161.98  Aligned_cols=168  Identities=15%  Similarity=0.103  Sum_probs=123.4

Q ss_pred             HHHHhhcCCC--CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          167 ELMKGYLKPV--LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       167 ~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      +.+.+.+...  ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++...    ..++.++++|+..+++
T Consensus        25 ~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~   98 (246)
T 1y8c_A           25 DFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI   98 (246)
T ss_dssp             HHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC
T ss_pred             HHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhc----CCCeEEEecccccCCc
Confidence            4444444332  678999999999999999999875  9999999999999999988765    2379999999998887


Q ss_pred             CCCcceEEEecc-cccCC---CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcch---hhh---HHHHHhhhh-------
Q 018003          245 ASSSIDAVHAGA-AIHCW---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI---PFS---RLLRQVCFL-------  307 (362)
Q Consensus       245 ~~~~fD~V~~~~-vl~h~---~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~---~~~---~~~~~~~~~-------  307 (362)
                      + ++||+|++.. +++|+   .++..+++++.++|||||++++.+++........   .+.   ......+..       
T Consensus        99 ~-~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (246)
T 1y8c_A           99 N-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLV  177 (246)
T ss_dssp             S-CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEE
T ss_pred             c-CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceE
Confidence            6 8899999998 99999   4667899999999999999999887642100000   000   000000000       


Q ss_pred             ------------cc--cccccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          308 ------------DL--KIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       308 ------------~~--~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                                  .+  .....+.++++.+++.++|+++||++++....
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~  225 (246)
T 1y8c_A          178 SMYISFFVRDGEFYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDC  225 (246)
T ss_dssp             EEEEEEEEECSSSEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEES
T ss_pred             EEEEEEEEecCCcccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcc
Confidence                        00  00012467899999999999999999887643

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.83  E-value=1.1e-19  Score=160.00  Aligned_cols=175  Identities=21%  Similarity=0.292  Sum_probs=129.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+.+.+..  +.+|||+|||+|.++..+++.++  +++|+|+|+.+++.|++++...    ..++.++++|+..+++++
T Consensus        30 ~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~  101 (227)
T 1ve3_A           30 PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFED  101 (227)
T ss_dssp             HHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCT
T ss_pred             HHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEECchhcCCCCC
Confidence            445555544  78999999999999999999887  9999999999999999988776    468999999999988888


Q ss_pred             CcceEEEeccc--ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH---HHHhhhhcc------------
Q 018003          247 SSIDAVHAGAA--IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL---LRQVCFLDL------------  309 (362)
Q Consensus       247 ~~fD~V~~~~v--l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------  309 (362)
                      ++||+|++..+  ++|..++..+++++.++|||||++++.+++.....  ......   ....+....            
T Consensus       102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (227)
T 1ve3_A          102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELL--PRLKESLVVGQKYWISKVIPDQEERTVVIE  179 (227)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHG--GGCCC---------CCEEEEETTTTEEEEE
T ss_pred             CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHH--HHHHhhhhcccceeecccccCccccEEEEE
Confidence            89999999999  56666788999999999999999999988642110  000000   000000000            


Q ss_pred             -----cccccccccCCHHHHHHHHHHCCCEEEEEEEeceeEEEEeeCc
Q 018003          310 -----KIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVKIP  352 (362)
Q Consensus       310 -----~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~kp  352 (362)
                           .....+...|.. ++.++|+++||+.++....+.....+..+|
T Consensus       180 ~~~~~~~~~~~~~~w~~-~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~  226 (227)
T 1ve3_A          180 FKSEQDSFRVRFNVWGK-TGVELLAKLYFTKEAEEKVGNYSYLTVYNP  226 (227)
T ss_dssp             C-----CCEEEEECCCH-HHHHHHHTTTEEEEEEEEETTTEEEEEEEE
T ss_pred             eccchhhheeehhhhch-HHHHHHHHHhhhHHHHHHhCCceeEEeeCC
Confidence                 000002334445 789999999999999988887766666655

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.82  E-value=4.6e-19  Score=166.98  Aligned_cols=178  Identities=12%  Similarity=0.097  Sum_probs=137.3

Q ss_pred             HHHhhcCCCC-CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CC
Q 018003          168 LMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (362)
Q Consensus       168 ~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~  245 (362)
                      .+.+.+...+ +.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...  ....++.++.+|+...+ +.
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~  245 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--DLGGRVEFFEKNLLDARNFE  245 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--TCGGGEEEEECCTTCGGGGT
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc--CCCCceEEEeCCcccCcccC
Confidence            4555555555 78999999999999999999988889999999 88999999987764  22357999999998875 13


Q ss_pred             CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      .+.||+|++.+++||++++  ..+|++++++|||||++++.++..+... ..+....+......  .... +...++.++
T Consensus       246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~--~~~~-~~~~~t~~e  321 (352)
T 3mcz_A          246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDR-VTPALSADFSLHMM--VNTN-HGELHPTPW  321 (352)
T ss_dssp             TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTS-SSSHHHHHHHHHHH--HHST-TCCCCCHHH
T ss_pred             CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCC-CCCchHHHhhHHHH--hhCC-CCCcCCHHH
Confidence            4569999999999999877  7899999999999999999988765431 12222222222210  1111 345689999


Q ss_pred             HHHHHHHCCCEEEEEEEeceeEEEEeeCcc
Q 018003          324 LKRIFRQFQLVVNLKLFYGHIQHYIVKIPS  353 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~~~~~~~~kp~  353 (362)
                      |+++++++||++++. ..|....+.++||.
T Consensus       322 ~~~ll~~aGf~~~~~-~~g~~~l~~a~kp~  350 (352)
T 3mcz_A          322 IAGVVRDAGLAVGER-SIGRYTLLIGQRSS  350 (352)
T ss_dssp             HHHHHHHTTCEEEEE-EETTEEEEEEECCC
T ss_pred             HHHHHHHCCCceeee-ccCceEEEEEecCC
Confidence            999999999999884 56778888888874

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.82  E-value=3.2e-19  Score=162.01  Aligned_cols=173  Identities=13%  Similarity=0.071  Sum_probs=130.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHH------HHHHHHHHHhhcCCCCCCCEEEEEec-
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN------MLKQCYEFVQQESNFPKENFLLVRAD-  238 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~------~~~~a~~~~~~~~~~~~~~~~~~~~d-  238 (362)
                      ..+.+.+...++.+|||||||+|.++..+++. ++..+++|+|+|+.      +++.|++++...  +...++.++.+| 
T Consensus        33 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~  110 (275)
T 3bkx_A           33 LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG--PLGDRLTVHFNTN  110 (275)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS--TTGGGEEEECSCC
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc--CCCCceEEEECCh
Confidence            45666677778899999999999999999988 56679999999997      999999988764  122579999998 


Q ss_pred             --CCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcc--hhhhHHHHHhhhhc--cccc
Q 018003          239 --ISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQVCFLD--LKIV  312 (362)
Q Consensus       239 --~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~  312 (362)
                        ...+|+++++||+|++..+++|++++..+++.+.++++|||++++.++........  ......+.......  ....
T Consensus       111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (275)
T 3bkx_A          111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDV  190 (275)
T ss_dssp             TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTT
T ss_pred             hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhcccccc
Confidence              45667788999999999999999999998888888888899999999876533111  11111111111100  0111


Q ss_pred             ccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          313 GFSIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       313 ~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      ..+..+++.+++.++++++||++++....
T Consensus       191 ~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          191 ANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             CSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             ccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence            22456899999999999999998876544

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.82  E-value=1.2e-18  Score=164.59  Aligned_cols=179  Identities=14%  Similarity=0.036  Sum_probs=135.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|+++++..  +...++.++.+|+...|++
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--GVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--TCTTTEEEEECCTTTSCCC
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc--CCCCCEEEEeCccccCCCC
Confidence            35566666666788999999999999999999988789999999 99999999988765  1234699999999888765


Q ss_pred             CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      +.  |+|++..++||+++  ...+|+++.++|||||++++.++..+..  ..+........+. ..........+++.++
T Consensus       256 ~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~~~~~~~~~~~-~~~~g~~~~~~~t~~e  330 (359)
T 1x19_A          256 EA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP--ENPNFDYLSHYIL-GAGMPFSVLGFKEQAR  330 (359)
T ss_dssp             CC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT--TSCCHHHHHHHGG-GGGSSCCCCCCCCGGG
T ss_pred             CC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC--CCchHHHHHHHHH-hcCCCCcccCCCCHHH
Confidence            43  99999999999988  6789999999999999999988776432  1122222221111 0000011234589999


Q ss_pred             HHHHHHHCCCEEEEEEEeceeEEEEeeCc
Q 018003          324 LKRIFRQFQLVVNLKLFYGHIQHYIVKIP  352 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~~~~~~~~kp  352 (362)
                      |+++++++||++++....+....+.++||
T Consensus       331 ~~~ll~~aGf~~v~~~~~~~~~vi~a~kp  359 (359)
T 1x19_A          331 YKEILESLGYKDVTMVRKYDHLLVQAVKP  359 (359)
T ss_dssp             HHHHHHHHTCEEEEEEEETTEEEEEEECC
T ss_pred             HHHHHHHCCCceEEEEecCCceEEEEeCC
Confidence            99999999999998887774455666654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.82  E-value=6.5e-19  Score=158.11  Aligned_cols=153  Identities=19%  Similarity=0.191  Sum_probs=115.5

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh---------cCC-----CCCCCE
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESN-----FPKENF  232 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------~~~-----~~~~~~  232 (362)
                      +.+...+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.|++.|+++...         ..+     ....++
T Consensus        58 ~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  135 (252)
T 2gb4_A           58 KHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSI  135 (252)
T ss_dssp             HHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSE
T ss_pred             HHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCce
Confidence            3333333334678999999999999999999986  999999999999999876531         000     013689


Q ss_pred             EEEEecCCCCCCCC-CcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcc
Q 018003          233 LLVRADISRLPFAS-SSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL  309 (362)
Q Consensus       233 ~~~~~d~~~~p~~~-~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (362)
                      .++++|+..+++.+ ++||+|++..+++|+++  ...+++++.++|||||++++.+......                  
T Consensus       136 ~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~------------------  197 (252)
T 2gb4_A          136 SLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPT------------------  197 (252)
T ss_dssp             EEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTT------------------
T ss_pred             EEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCc------------------
Confidence            99999999998764 89999999999999974  3578999999999999998776553210                  


Q ss_pred             cccccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          310 KIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       310 ~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      ...+ ....++++++.++++. +|+++.....
T Consensus       198 ~~~g-~~~~~~~~el~~~l~~-~f~v~~~~~~  227 (252)
T 2gb4_A          198 KHAG-PPFYVPSAELKRLFGT-KCSMQCLEEV  227 (252)
T ss_dssp             SCCC-SSCCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred             cCCC-CCCCCCHHHHHHHhhC-CeEEEEEecc
Confidence            0001 2233789999999987 5987766543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.82  E-value=6.6e-19  Score=151.73  Aligned_cols=147  Identities=19%  Similarity=0.201  Sum_probs=119.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.+++++...   ...++.++.+|+..+++ ++
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~-~~   96 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIE---NLDNLHTRVVDLNNLTF-DR   96 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH---TCTTEEEEECCGGGCCC-CC
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhC---CCCCcEEEEcchhhCCC-CC
Confidence            455555656678999999999999999999864  9999999999999999988765   13479999999998887 78


Q ss_pred             cceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +||+|++..+++|++  ++..+++++.++|||||.+++.++........                ... +...++.++++
T Consensus        97 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~----------------~~~-~~~~~~~~~l~  159 (199)
T 2xvm_A           97 QYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC----------------TVG-FPFAFKEGELR  159 (199)
T ss_dssp             CEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC----------------CSC-CSCCBCTTHHH
T ss_pred             CceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCC----------------CCC-CCCccCHHHHH
Confidence            999999999999998  78899999999999999998877654321110                011 34567899999


Q ss_pred             HHHHHCCCEEEEEE
Q 018003          326 RIFRQFQLVVNLKL  339 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~  339 (362)
                      +++++  |++++..
T Consensus       160 ~~~~~--f~~~~~~  171 (199)
T 2xvm_A          160 RYYEG--WERVKYN  171 (199)
T ss_dssp             HHTTT--SEEEEEE
T ss_pred             HHhcC--CeEEEec
Confidence            99986  8776654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.81  E-value=1.1e-19  Score=162.02  Aligned_cols=145  Identities=17%  Similarity=0.141  Sum_probs=119.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|++++...   ...++.++.+|+..+++++++||+|++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  154 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE---GKRVRNYFCCGLQDFTPEPDSYDVIWIQW  154 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG---GGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc---CCceEEEEEcChhhcCCCCCCEEEEEEcc
Confidence            57899999999999999988876 459999999999999999987654   12468999999998888888999999999


Q ss_pred             cccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003          257 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV  334 (362)
Q Consensus       257 vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~  334 (362)
                      +++|++++.  .+++++.++|||||++++.++.....    ..+           .... +....+.+++.++++++||+
T Consensus       155 ~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~-----------~~~~-~~~~~~~~~~~~~l~~aGf~  218 (241)
T 2ex4_A          155 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----VIL-----------DDVD-SSVCRDLDVVRRIICSAGLS  218 (241)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----EEE-----------ETTT-TEEEEBHHHHHHHHHHTTCC
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----cee-----------cccC-CcccCCHHHHHHHHHHcCCe
Confidence            999999865  89999999999999999998875420    000           1111 23345899999999999999


Q ss_pred             EEEEEEe
Q 018003          335 VNLKLFY  341 (362)
Q Consensus       335 ~v~~~~~  341 (362)
                      +++....
T Consensus       219 ~~~~~~~  225 (241)
T 2ex4_A          219 LLAEERQ  225 (241)
T ss_dssp             EEEEEEC
T ss_pred             EEEeeec
Confidence            8887654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.81  E-value=4.1e-19  Score=164.87  Aligned_cols=167  Identities=12%  Similarity=0.110  Sum_probs=127.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      .+.+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.|++++...  +...++.++.+|+..+| 
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~-  153 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASI--DTNRSRQVLLQGWEDFA-  153 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTS--CCSSCEEEEESCGGGCC-
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCCCceEEEECChHHCC-
Confidence            456667777778899999999999999999987 54  9999999999999999988765  22357999999998775 


Q ss_pred             CCCcceEEEecccccCC--CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcch----hhh---HHHHHhhhhcccccccc
Q 018003          245 ASSSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI----PFS---RLLRQVCFLDLKIVGFS  315 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~--~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~  315 (362)
                        ++||+|++..+++|+  +++..+++++.++|||||++++.++.........    +..   ........ .... + .
T Consensus       154 --~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~-~  228 (318)
T 2fk8_A          154 --EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIV-TEIF-P-G  228 (318)
T ss_dssp             --CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHH-HHTS-T-T
T ss_pred             --CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHH-HhcC-C-C
Confidence              789999999999999  5788999999999999999999998865321100    000   00001111 0011 1 2


Q ss_pred             cccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          316 IPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       316 ~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      ..+.+.+++.++++++||++++....+
T Consensus       229 ~~~~s~~~~~~~l~~aGf~~~~~~~~~  255 (318)
T 2fk8_A          229 GRLPSTEMMVEHGEKAGFTVPEPLSLR  255 (318)
T ss_dssp             CCCCCHHHHHHHHHHTTCBCCCCEECH
T ss_pred             CcCCCHHHHHHHHHhCCCEEEEEEecc
Confidence            456799999999999999988766544

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.81  E-value=1.4e-18  Score=162.46  Aligned_cols=160  Identities=13%  Similarity=0.016  Sum_probs=124.6

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f  249 (362)
                      .+.+...+..+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...  +...++.+..+|+. .+++. +|
T Consensus       162 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~-~~~p~-~~  236 (332)
T 3i53_A          162 AAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT--GLSGRAQVVVGSFF-DPLPA-GA  236 (332)
T ss_dssp             GGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTT-SCCCC-SC
T ss_pred             HHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--CcCcCeEEecCCCC-CCCCC-CC
Confidence            3334444568999999999999999999988889999999 99999999988765  22468999999996 44444 79


Q ss_pred             eEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003          250 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI  327 (362)
Q Consensus       250 D~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l  327 (362)
                      |+|++.+++||++|+  ..+|++++++|||||++++.++..+.. ...........      .. . ....++.++|+++
T Consensus       237 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d~~~~------~~-~-~~~~~t~~e~~~l  307 (332)
T 3i53_A          237 GGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMDLRML------TY-F-GGKERSLAELGEL  307 (332)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHHHHHH------HH-H-SCCCCCHHHHHHH
T ss_pred             cEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHHHHHH------hh-C-CCCCCCHHHHHHH
Confidence            999999999999987  789999999999999999998876532 11111111110      01 1 4566899999999


Q ss_pred             HHHCCCEEEEEEEece
Q 018003          328 FRQFQLVVNLKLFYGH  343 (362)
Q Consensus       328 l~~~Gf~~v~~~~~g~  343 (362)
                      ++++||++++....+.
T Consensus       308 l~~aGf~~~~~~~~~~  323 (332)
T 3i53_A          308 AAQAGLAVRAAHPISY  323 (332)
T ss_dssp             HHHTTEEEEEEEECSS
T ss_pred             HHHCCCEEEEEEECCC
Confidence            9999999998887665

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.81  E-value=7.4e-19  Score=161.79  Aligned_cols=172  Identities=17%  Similarity=0.202  Sum_probs=125.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCC----CCEEEEEec
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK----ENFLLVRAD  238 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~----~~~~~~~~d  238 (362)
                      ......+.+.+...+ .+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|++++...    .    .++.++++|
T Consensus        69 ~~~~~~~~~~~~~~~-~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~----~~~~~~~v~~~~~d  141 (299)
T 3g2m_A           69 TSEAREFATRTGPVS-GPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEA----PADVRDRCTLVQGD  141 (299)
T ss_dssp             HHHHHHHHHHHCCCC-SCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTS----CHHHHTTEEEEECB
T ss_pred             cHHHHHHHHhhCCCC-CcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhc----ccccccceEEEeCc
Confidence            344456666666543 4999999999999999999865  8999999999999999998765    2    579999999


Q ss_pred             CCCCCCCCCcceEEEec-ccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCC-----cchhhhHHHHHh--hhh-
Q 018003          239 ISRLPFASSSIDAVHAG-AAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-----NLIPFSRLLRQV--CFL-  307 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~-~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~-----~~~~~~~~~~~~--~~~-  307 (362)
                      +..+++ +++||+|++. .+++|+++  ...+|+++.++|||||+|++.+++.+...     ....+.......  +.. 
T Consensus       142 ~~~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  220 (299)
T 3g2m_A          142 MSAFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVR  220 (299)
T ss_dssp             TTBCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEE
T ss_pred             hhcCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEE
Confidence            999887 6889999865 66676652  47899999999999999999998764210     000000000000  000 


Q ss_pred             --------------------cccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          308 --------------------DLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       308 --------------------~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                                          .......+.++++.++++++|+++||++++...+.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~  275 (299)
T 3g2m_A          221 HLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA  275 (299)
T ss_dssp             EEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             EeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence                                00001125668899999999999999999887764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.81  E-value=1.1e-18  Score=153.25  Aligned_cols=141  Identities=15%  Similarity=0.162  Sum_probs=114.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +.+|||+|||+|.++..++..      +|+|+|+.+++.++++          ++.++++|+..+++++++||+|++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~----------~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc----------CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            779999999999999887653      9999999999999873          678999999999888889999999999


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                      ++|++++..+++++.++|||||.+++.+++....  ...+...    ......... +..+++.+++.++|+++||++++
T Consensus       112 l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~~~~~----~~~~~~~~~-~~~~~~~~~l~~~l~~~Gf~~~~  184 (219)
T 1vlm_A          112 ICFVDDPERALKEAYRILKKGGYLIVGIVDRESF--LGREYEK----NKEKSVFYK-NARFFSTEELMDLMRKAGFEEFK  184 (219)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSH--HHHHHHH----TTTC-CCST-TCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             HhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccH--HHHHHHH----HhcCcchhc-ccccCCHHHHHHHHHHCCCeEEE
Confidence            9999999999999999999999999999875421  1111111    110111122 56789999999999999999887


Q ss_pred             EEEe
Q 018003          338 KLFY  341 (362)
Q Consensus       338 ~~~~  341 (362)
                      ....
T Consensus       185 ~~~~  188 (219)
T 1vlm_A          185 VVQT  188 (219)
T ss_dssp             EEEE
T ss_pred             Eecc
Confidence            6654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.81  E-value=1.3e-19  Score=163.87  Aligned_cols=153  Identities=16%  Similarity=0.251  Sum_probs=112.1

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC-------------------------
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------------------  228 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------------------------  228 (362)
                      ...++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|+++++...+..                         
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            445678999999999988777666653 379999999999999998765431000                         


Q ss_pred             -CCCEE-EEEecCCCC-CC---CCCcceEEEecccccCC----CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhh
Q 018003          229 -KENFL-LVRADISRL-PF---ASSSIDAVHAGAAIHCW----SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS  298 (362)
Q Consensus       229 -~~~~~-~~~~d~~~~-p~---~~~~fD~V~~~~vl~h~----~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~  298 (362)
                       ..++. ++++|+... |+   ..++||+|+++.+|||+    +++..++++++++|||||+|++++.......     .
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~-----~  205 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSY-----M  205 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE-----E
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccc-----e
Confidence             01233 889999873 43   25789999999999986    3446899999999999999999986543210     0


Q ss_pred             HHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          299 RLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                             ..  . .......++.+++.++|+++||++++.....
T Consensus       206 -------~g--~-~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~  239 (263)
T 2a14_A          206 -------VG--K-REFSCVALEKGEVEQAVLDAGFDIEQLLHSP  239 (263)
T ss_dssp             -------ET--T-EEEECCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred             -------eC--C-eEeeccccCHHHHHHHHHHCCCEEEEEeecc
Confidence                   00  0 0012346799999999999999988776653

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.81  E-value=3.2e-18  Score=162.32  Aligned_cols=163  Identities=10%  Similarity=0.067  Sum_probs=129.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...  +...++.++.+|+. .+++
T Consensus       191 ~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~l~~~v~~~~~d~~-~~~p  266 (369)
T 3gwz_A          191 AGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR--GLADRCEILPGDFF-ETIP  266 (369)
T ss_dssp             HHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTT-TCCC
T ss_pred             HHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc--CcCCceEEeccCCC-CCCC
Confidence            34555666666678999999999999999999988889999999 99999999988765  22468999999997 4555


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      . .||+|++.+++||++++.  .+|++++++|||||++++.++..+....  +. ........   .... ....++.++
T Consensus       267 ~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~--~~-~~~~d~~~---~~~~-~g~~~t~~e  338 (369)
T 3gwz_A          267 D-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPA--AS-TLFVDLLL---LVLV-GGAERSESE  338 (369)
T ss_dssp             S-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC--HH-HHHHHHHH---HHHH-SCCCBCHHH
T ss_pred             C-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC--Cc-hhHhhHHH---Hhhc-CCccCCHHH
Confidence            5 799999999999999886  7999999999999999999987654311  11 11111111   0111 456789999


Q ss_pred             HHHHHHHCCCEEEEEEE
Q 018003          324 LKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~  340 (362)
                      |+++|+++||++++...
T Consensus       339 ~~~ll~~aGf~~~~~~~  355 (369)
T 3gwz_A          339 FAALLEKSGLRVERSLP  355 (369)
T ss_dssp             HHHHHHTTTEEEEEEEE
T ss_pred             HHHHHHHCCCeEEEEEE
Confidence            99999999999998877

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.1e-18  Score=160.53  Aligned_cols=172  Identities=16%  Similarity=0.116  Sum_probs=125.2

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ....+.+..+.. .++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|+++++.. ++...++.++++|+..
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-PDTYKNVSFKISSSDD  100 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-C-CCTTEEEEECCTTC
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-cCCCCceEEEEcCHHh
Confidence            444566666544 468899999999999999999763 5679999999999999999987763 1235789999999999


Q ss_pred             CCCCC------CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccc
Q 018003          242 LPFAS------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFS  315 (362)
Q Consensus       242 ~p~~~------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (362)
                      +++.+      ++||+|++..++||+ ++..+++++.++|||||.+++.++..... ...+.+..+...+......   .
T Consensus       101 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~  175 (299)
T 3g5t_A          101 FKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIF-PDYPEFDDLMIEVPYGKQG---L  175 (299)
T ss_dssp             CGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEEC-TTCGGGTTHHHHHHHCTTT---T
T ss_pred             CCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccc-cCcHHHHHHHHHhccCccc---c
Confidence            98877      899999999999999 99999999999999999999854432111 0111122222222100001   1


Q ss_pred             ccc---CCHHHHHHHHHHCCC-----EEEEEEEe
Q 018003          316 IPV---LGFDDLKRIFRQFQL-----VVNLKLFY  341 (362)
Q Consensus       316 ~~~---~s~~~l~~ll~~~Gf-----~~v~~~~~  341 (362)
                      ..+   ...+.+++.++++||     +.++...+
T Consensus       176 ~~~w~~p~~~~~~~~l~~~gfp~~~f~~v~~~~~  209 (299)
T 3g5t_A          176 GPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSYF  209 (299)
T ss_dssp             GGGSCTTHHHHHHTTTTTCCCCTTTEEEEEEEEE
T ss_pred             cchhhchhhHHHHHhhhccCCChHHcCcceEEEe
Confidence            222   345678999999999     66665554

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.80  E-value=1.3e-19  Score=160.82  Aligned_cols=172  Identities=17%  Similarity=0.141  Sum_probs=122.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+...+  .++.+|||+|||+|.++..+++.++  +++|+|+|+.+++.|+++        ..++.++++|+..+++ +
T Consensus        32 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~-~   98 (239)
T 3bxo_A           32 DLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR--------LPDATLHQGDMRDFRL-G   98 (239)
T ss_dssp             HHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH--------CTTCEEEECCTTTCCC-S
T ss_pred             HHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh--------CCCCEEEECCHHHccc-C
Confidence            3444444  4578999999999999999999876  999999999999999986        3578999999998887 6


Q ss_pred             CcceEEEe-cccccCCCCH---HHHHHHHHhhccCCcEEEEEEEccCCCCcchh---h--------hHH-----------
Q 018003          247 SSIDAVHA-GAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP---F--------SRL-----------  300 (362)
Q Consensus       247 ~~fD~V~~-~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~---~--------~~~-----------  300 (362)
                      ++||+|++ ..+++|++++   ..+++++.++|||||.+++.+++.........   +        +..           
T Consensus        99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (239)
T 3bxo_A           99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNAT  178 (239)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEE
T ss_pred             CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEE
Confidence            78999995 5599999654   68999999999999999998766532210000   0        000           


Q ss_pred             ------H-HH--hhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEe-ceeEEEEeeCc
Q 018003          301 ------L-RQ--VCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY-GHIQHYIVKIP  352 (362)
Q Consensus       301 ------~-~~--~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~-g~~~~~~~~kp  352 (362)
                            + ..  ..... .....+.++++.++++++|+++||++...... +....++++||
T Consensus       179 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~  239 (239)
T 3bxo_A          179 RMEVHFTVADPGKGVRH-FSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA  239 (239)
T ss_dssp             EEEEEEEEEETTTEEEE-EEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred             EEEEEEEEecCCCcceE-EEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence                  0 00  00000 00111457899999999999999976554332 22355666554

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.80  E-value=1.5e-18  Score=162.11  Aligned_cols=169  Identities=12%  Similarity=0.160  Sum_probs=129.6

Q ss_pred             HHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          166 FELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       166 ~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ...+.+.+..  .++.+|||+|||+|.++..+++..+..+++++|++ .+++.|++++...  +...++.++.+|+...+
T Consensus       152 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~  228 (335)
T 2r3s_A          152 AQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ--GVASRYHTIAGSAFEVD  228 (335)
T ss_dssp             HHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--TCGGGEEEEESCTTTSC
T ss_pred             HHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--CCCcceEEEecccccCC
Confidence            3455555555  66789999999999999999999777799999999 9999999987765  12346999999998877


Q ss_pred             CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          244 FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      ++.+ ||+|++.+++||++++  ..+++++.++|||||++++.++...... ..+...........  ...+ +...++.
T Consensus       229 ~~~~-~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~--~~~~-~~~~~t~  303 (335)
T 2r3s_A          229 YGND-YDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDR-ITPPDAAAFSLVML--ATTP-NGDAYTF  303 (335)
T ss_dssp             CCSC-EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTS-SCSHHHHHHHHHHH--HHSS-SCCCCCH
T ss_pred             CCCC-CcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCc-CCchHHHHHHHHHH--eeCC-CCCcCCH
Confidence            6654 9999999999999766  5899999999999999999988765321 12222222222210  1111 4567899


Q ss_pred             HHHHHHHHHCCCEEEEEEEec
Q 018003          322 DDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      ++|.++++++||+.++....+
T Consensus       304 ~~~~~ll~~aGf~~~~~~~~~  324 (335)
T 2r3s_A          304 AEYESMFSNAGFSHSQLHSLP  324 (335)
T ss_dssp             HHHHHHHHHTTCSEEEEECCT
T ss_pred             HHHHHHHHHCCCCeeeEEECC
Confidence            999999999999988876554

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.80  E-value=2.8e-19  Score=155.52  Aligned_cols=155  Identities=18%  Similarity=0.257  Sum_probs=117.1

Q ss_pred             CCCCeEEEEcCccchH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          176 VLGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      .++.+|||+|||+|.+ ...+...+  .+++|+|+|+.+++.+++++...    ..++.++++|+..+++++++||+|++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~--~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDG--YKTYGIEISDLQLKKAENFSREN----NFKLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTT--CEEEEEECCHHHHHHHHHHHHHH----TCCCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhc----CCceEEEECchhhCCCCCCceeEEEE
Confidence            3478999999999997 45555544  49999999999999999988766    46789999999999988899999999


Q ss_pred             cccccCC--CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcch--hhhHHHHHhhhhcccccccccccCCHHHHHHHHHH
Q 018003          255 GAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQ  330 (362)
Q Consensus       255 ~~vl~h~--~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~  330 (362)
                      ..+++|+  .++..+++++.++|||||++++.++.........  ++.........   ...+....+++.+++.++++.
T Consensus        96 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~e~~~~~~~  172 (209)
T 2p8j_A           96 YGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLE---RGEKVIHSYVSLEEADKYFKD  172 (209)
T ss_dssp             CSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC----CCCEEEEEECHHHHHHTTTT
T ss_pred             cChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceecc---CCCceeEEecCHHHHHHHHhh
Confidence            9999999  5778999999999999999999998764321100  00000000000   111113468899999999999


Q ss_pred             CCCEEEEEE
Q 018003          331 FQLVVNLKL  339 (362)
Q Consensus       331 ~Gf~~v~~~  339 (362)
                      +||...+..
T Consensus       173 ~g~~~~~~~  181 (209)
T 2p8j_A          173 MKVLFKEDR  181 (209)
T ss_dssp             SEEEEEEEE
T ss_pred             cCceeeeee
Confidence            999766544

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.80  E-value=2.1e-19  Score=157.96  Aligned_cols=160  Identities=14%  Similarity=0.102  Sum_probs=118.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PF  244 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~  244 (362)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++         .++.+..+|+..+   ++
T Consensus        43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~  111 (227)
T 3e8s_A           43 AILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAA---------GAGEVHLASYAQLAEAKV  111 (227)
T ss_dssp             HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHT---------CSSCEEECCHHHHHTTCS
T ss_pred             HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHh---------cccccchhhHHhhccccc
Confidence            445555545578999999999999999999865  999999999999999984         4667888887665   54


Q ss_pred             CC-CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcc--cccccccccCCH
Q 018003          245 AS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL--KIVGFSIPVLGF  321 (362)
Q Consensus       245 ~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~  321 (362)
                      .. ++||+|++..+++ ..++..+++++.++|||||++++.+++....... .+...+....+..+  .....+..+++.
T Consensus       112 ~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (227)
T 3e8s_A          112 PVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADG-DYQDGWREESFAGFAGDWQPMPWYFRTL  189 (227)
T ss_dssp             CCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT-CCSCEEEEECCTTSSSCCCCEEEEECCH
T ss_pred             ccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCcc-ccccccchhhhhccccCcccceEEEecH
Confidence            44 4599999999999 7899999999999999999999999876432111 11111000000000  011225567899


Q ss_pred             HHHHHHHHHCCCEEEEEEE
Q 018003          322 DDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~  340 (362)
                      +++.++|+++||++++...
T Consensus       190 ~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          190 ASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             HHHHHHHHHTTEEEEEEEC
T ss_pred             HHHHHHHHHcCCeEEEEec
Confidence            9999999999999987665

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.80  E-value=1.2e-18  Score=164.90  Aligned_cols=170  Identities=14%  Similarity=0.073  Sum_probs=125.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~  254 (362)
                      ...+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...  +...++.++.+|+...  |++ ++||+|++
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~  254 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL--SGSERIHGHGANLLDRDVPFP-TGFDAVWM  254 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC--TTGGGEEEEECCCCSSSCCCC-CCCSEEEE
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc--CcccceEEEEccccccCCCCC-CCcCEEEE
Confidence            467999999999999999999988889999999 99999999988764  1235899999999875  465 78999999


Q ss_pred             cccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhh-HHHHHhhhhcccccccccccCCHHHHHHHHHHC
Q 018003          255 GAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS-RLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQF  331 (362)
Q Consensus       255 ~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~  331 (362)
                      ..++||++++.  .+|++++++|||||++++.++..+......... ........ .....+ ....++.++|+++|+++
T Consensus       255 ~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~t~~e~~~ll~~A  332 (363)
T 3dp7_A          255 SQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYF-TAMANG-NSKMFHSDDLIRCIENA  332 (363)
T ss_dssp             ESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHH-HHSSCS-SCCSCCHHHHHHHHHTT
T ss_pred             echhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhH-HhhhCC-CCcccCHHHHHHHHHHc
Confidence            99999998774  789999999999999999988765432111100 00010000 001112 45577999999999999


Q ss_pred             CCEEEEEEE-eceeEEEEeeCc
Q 018003          332 QLVVNLKLF-YGHIQHYIVKIP  352 (362)
Q Consensus       332 Gf~~v~~~~-~g~~~~~~~~kp  352 (362)
                      ||++++... .|.....+..++
T Consensus       333 Gf~~v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          333 GLEVEEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             TEEESCCCCCBTTTBEEEEEEE
T ss_pred             CCeEEEEEeCCCCCceEEEEee
Confidence            999987763 344333333333

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.79  E-value=1.7e-18  Score=154.09  Aligned_cols=166  Identities=16%  Similarity=0.140  Sum_probs=121.3

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ..+.+.+.+.+  +.+|||+|||+|.++..+++.   .+++|+|+|+.+++.|++++...    ..++.++++|+..+++
T Consensus        23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~   93 (243)
T 3d2l_A           23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET----NRHVDFWVQDMRELEL   93 (243)
T ss_dssp             HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCGGGCCC
T ss_pred             HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc----CCceEEEEcChhhcCC
Confidence            34556666654  689999999999999998887   49999999999999999988765    3679999999988876


Q ss_pred             CCCcceEEEecc-cccCCC---CHHHHHHHHHhhccCCcEEEEEEEccCCCCcc---hhhh----------HHH----HH
Q 018003          245 ASSSIDAVHAGA-AIHCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IPFS----------RLL----RQ  303 (362)
Q Consensus       245 ~~~~fD~V~~~~-vl~h~~---d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~---~~~~----------~~~----~~  303 (362)
                      + ++||+|++.. +++|+.   ++..+++++.++|||||++++.+++.......   ..+.          ...    ..
T Consensus        94 ~-~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (243)
T 3d2l_A           94 P-EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPL  172 (243)
T ss_dssp             S-SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTT
T ss_pred             C-CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCcccc
Confidence            5 7899999986 999994   45688999999999999999987754210000   0000          000    00


Q ss_pred             hhhhc-----------cc--ccccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003          304 VCFLD-----------LK--IVGFSIPVLGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       304 ~~~~~-----------~~--~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      .....           +.  ....+.++++.++++++|+++||++++...
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~  222 (243)
T 3d2l_A          173 SVVHELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTG  222 (243)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEEEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEec
Confidence            00000           00  001145679999999999999999988754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.79  E-value=9.4e-19  Score=157.74  Aligned_cols=164  Identities=14%  Similarity=0.280  Sum_probs=123.0

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC-------------------------
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------------------  228 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------------------------  228 (362)
                      ...++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.+++++....+..                         
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            335678999999999999998888764 589999999999999998875530000                         


Q ss_pred             -CCCE-EEEEecCCCCC-CCC---CcceEEEeccccc----CCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhh
Q 018003          229 -KENF-LLVRADISRLP-FAS---SSIDAVHAGAAIH----CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS  298 (362)
Q Consensus       229 -~~~~-~~~~~d~~~~p-~~~---~~fD~V~~~~vl~----h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~  298 (362)
                       ..++ .++++|+...+ +++   ++||+|++..+++    |++++..+++++.++|||||++++.++........    
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~----  207 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMI----  207 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE----
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEc----
Confidence             0027 89999998764 355   7899999999999    66678899999999999999999998654321000    


Q ss_pred             HHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEec-----------eeEEEEeeCcc
Q 018003          299 RLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG-----------HIQHYIVKIPS  353 (362)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g-----------~~~~~~~~kp~  353 (362)
                                 .....+...++.+++.++|+++||++++.....           ....++++|+.
T Consensus       208 -----------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~  262 (265)
T 2i62_A          208 -----------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPG  262 (265)
T ss_dssp             -----------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC
T ss_pred             -----------CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEecccc
Confidence                       000113456899999999999999988877654           34455666654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.79  E-value=6.1e-18  Score=160.53  Aligned_cols=166  Identities=14%  Similarity=0.089  Sum_probs=125.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++++...  +...++.++.+|+.+ +++.
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~~  247 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--GLADRVTVAEGDFFK-PLPV  247 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTS-CCSC
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc--CCCCceEEEeCCCCC-cCCC
Confidence            4555666666788999999999999999999987789999999 99999999988765  223489999999965 3343


Q ss_pred             CcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEE--ccCCCCcchhhhHHHHHhhhhcccccccccccCCHH
Q 018003          247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY--IVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                       .||+|++.+++||++++.  .+++++.++|||||++++.++  .....  ..+..........   .... ....++.+
T Consensus       248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~~~---~~~~-~~~~~~~~  320 (374)
T 1qzz_A          248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG--ADRFFSTLLDLRM---LTFM-GGRVRTRD  320 (374)
T ss_dssp             -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHH---HHHH-SCCCCCHH
T ss_pred             -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCC--CCcchhhhcchHH---HHhC-CCcCCCHH
Confidence             499999999999999885  899999999999999999887  43211  1112222221111   0111 34668999


Q ss_pred             HHHHHHHHCCCEEEEEEEece
Q 018003          323 DLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +|.++|+++||++++....+.
T Consensus       321 ~~~~ll~~aGf~~~~~~~~~~  341 (374)
T 1qzz_A          321 EVVDLAGSAGLALASERTSGS  341 (374)
T ss_dssp             HHHHHHHTTTEEEEEEEEECC
T ss_pred             HHHHHHHHCCCceEEEEECCC
Confidence            999999999999988776654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.79  E-value=3.4e-19  Score=163.38  Aligned_cols=124  Identities=21%  Similarity=0.294  Sum_probs=104.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~  241 (362)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++..... .....++.+..+|+..
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  120 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence            44456666666656688999999999999999999876  99999999999999998763320 0012478899999988


Q ss_pred             CC---CCCCcceEEEec-ccccCCCC-------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          242 LP---FASSSIDAVHAG-AAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       242 ~p---~~~~~fD~V~~~-~vl~h~~d-------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++   +++++||+|++. .+++|+++       +..+++++.++|||||++++.+++.
T Consensus       121 ~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          121 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             HHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence            87   788999999998 89999999       8999999999999999999999865

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.79  E-value=1.6e-18  Score=150.05  Aligned_cols=148  Identities=15%  Similarity=0.127  Sum_probs=117.0

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+...+.+  + +|||+|||+|.++..+++.+.  +++|+|+|+.+++.|++++...    ..++.++++|+..+++++
T Consensus        22 ~~~~~~~~~--~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~~~   92 (202)
T 2kw5_A           22 VSVANQIPQ--G-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEK----GVKITTVQSNLADFDIVA   92 (202)
T ss_dssp             HHHHHHSCS--S-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHH----TCCEEEECCBTTTBSCCT
T ss_pred             HHHHHhCCC--C-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEEcChhhcCCCc
Confidence            344444443  5 999999999999999998865  9999999999999999988776    348999999999998888


Q ss_pred             CcceEEEecccccCC--CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~--~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++||+|++..  .|+  .++..+++++.++|||||.+++.++......    +      . .   .....+..+++.+++
T Consensus        93 ~~fD~v~~~~--~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~------~-~---~~~~~~~~~~~~~~l  156 (202)
T 2kw5_A           93 DAWEGIVSIF--CHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ----Y------N-T---GGPKDLDLLPKLETL  156 (202)
T ss_dssp             TTCSEEEEEC--CCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG----G------T-S---CCSSSGGGCCCHHHH
T ss_pred             CCccEEEEEh--hcCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccc----C------C-C---CCCCcceeecCHHHH
Confidence            8999999954  444  3667999999999999999999998765321    0      0 0   111125678999999


Q ss_pred             HHHHHHCCCEEEEEEEe
Q 018003          325 KRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~  341 (362)
                      .++++  ||+++.....
T Consensus       157 ~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          157 QSELP--SLNWLIANNL  171 (202)
T ss_dssp             HHHCS--SSCEEEEEEE
T ss_pred             HHHhc--CceEEEEEEE
Confidence            99998  9988765543

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.78  E-value=1e-17  Score=158.13  Aligned_cols=166  Identities=12%  Similarity=0.111  Sum_probs=126.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++++...  +...++.++.+|+.+ +++.
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~~  248 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--GLSDRVDVVEGDFFE-PLPR  248 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--TCTTTEEEEECCTTS-CCSS
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--CCCCceEEEeCCCCC-CCCC
Confidence            4455566666788999999999999999999988889999999 99999999988765  223489999999875 3343


Q ss_pred             CcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEc-cCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                       .||+|++..++||++++.  .+++++.++|||||++++.++. .... .. +..........   .... +...++.++
T Consensus       249 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~-~~~~~~~~~~~---~~~~-~~~~~t~~e  321 (360)
T 1tw3_A          249 -KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHEN-SF-NEQFTELDLRM---LVFL-GGALRTREK  321 (360)
T ss_dssp             -CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGG-CC-SHHHHHHHHHH---HHHH-SCCCCBHHH
T ss_pred             -CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCC-CC-cchhhhccHHH---hhhc-CCcCCCHHH
Confidence             499999999999998874  8999999999999999999876 3211 11 11111111111   0001 346689999


Q ss_pred             HHHHHHHCCCEEEEEEEece
Q 018003          324 LKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      |+++|+++||++++....+.
T Consensus       322 ~~~ll~~aGf~~~~~~~~~~  341 (360)
T 1tw3_A          322 WDGLAASAGLVVEEVRQLPS  341 (360)
T ss_dssp             HHHHHHHTTEEEEEEEEEEC
T ss_pred             HHHHHHHCCCeEEEEEeCCC
Confidence            99999999999988776654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.78  E-value=6.2e-19  Score=161.71  Aligned_cols=158  Identities=16%  Similarity=0.204  Sum_probs=120.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-CCCcceEEEe
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHA  254 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-~~~~fD~V~~  254 (362)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|++++...  ....++.++++|+..+++ ++++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~v~~  139 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFDVISS  139 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhc--CCCccEEEEECCccccccCCCCCcCEEEE
Confidence            457899999999999999888875 358999999999999999988764  122478999999999887 5789999999


Q ss_pred             cccccC----CCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHH-------------------h-hhhcc-
Q 018003          255 GAAIHC----WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-------------------V-CFLDL-  309 (362)
Q Consensus       255 ~~vl~h----~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~-------------------~-~~~~~-  309 (362)
                      ..++||    ..++..+++++.++|||||++++.+++...      ....+..                   . ....+ 
T Consensus       140 ~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  213 (298)
T 1ri5_A          140 QFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV------ILERYKQGRMSNDFYKIELEKMEDVPMESVREYR  213 (298)
T ss_dssp             ESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH------HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEE
T ss_pred             CchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH------HHHHHccCccCCeeEEEEeCccccccccccceEE
Confidence            999977    456789999999999999999999987531      1110000                   0 00000 


Q ss_pred             -----cccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          310 -----KIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       310 -----~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                           .....+..+++.++++++|+++||++++...++
T Consensus       214 ~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~~  251 (298)
T 1ri5_A          214 FTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGFI  251 (298)
T ss_dssp             EEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEHH
T ss_pred             EEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCHH
Confidence                 000113567899999999999999998876654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.78  E-value=2.8e-19  Score=164.23  Aligned_cols=155  Identities=14%  Similarity=0.091  Sum_probs=112.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC-----------------------------
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-----------------------------  227 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------------------------  227 (362)
                      ++.+|||||||+|.++..+++..+..+|+|+|+|+.+++.|++++......                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            578999999999999999999865679999999999999999876543000                             


Q ss_pred             --------------------------CCCCEEEEEecCCCCC-----CCCCcceEEEecccccCCC------CHHHHHHH
Q 018003          228 --------------------------PKENFLLVRADISRLP-----FASSSIDAVHAGAAIHCWS------SPSTGVAE  270 (362)
Q Consensus       228 --------------------------~~~~~~~~~~d~~~~p-----~~~~~fD~V~~~~vl~h~~------d~~~~l~~  270 (362)
                                                ...++.+.++|+...+     +..++||+|++..+++|+.      ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                      0148999999997654     5678999999999998874      67789999


Q ss_pred             HHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHH--CCCEEEEEEE
Q 018003          271 ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQ--FQLVVNLKLF  340 (362)
Q Consensus       271 i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~--~Gf~~v~~~~  340 (362)
                      +.++|||||+|++....+..+.........+....         +...+.++++..+|.+  +||+.++...
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~---------~~~~~~p~~~~~~L~~~~~GF~~~~~~~  268 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNY---------YRIQLKPEQFSSYLTSPDVGFSSYELVA  268 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHH---------HHCCCCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhh---------hcEEEcHHHHHHHHHhcCCCceEEEEec
Confidence            99999999999997654321111000011111111         2233557899999999  9997766543

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.78  E-value=7.1e-18  Score=157.63  Aligned_cols=166  Identities=14%  Similarity=0.069  Sum_probs=126.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+.+.+...+ .+|||+|||+|.++..+++..+..+++++|+ +.+++.|++++...  +...++.++.+|+.. +++
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~-~~~  231 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL--LAGERVSLVGGDMLQ-EVP  231 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH--HHTTSEEEEESCTTT-CCC
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc--CCCCcEEEecCCCCC-CCC
Confidence            345555555555 8999999999999999999987789999999 99999999886543  113579999999977 555


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                       ++||+|++..++||++++.  .++++++++|||||++++.++..+....  +..........   .... ....++.++
T Consensus       232 -~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~---~~~~-~~~~~t~~e  304 (334)
T 2ip2_A          232 -SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP--SPMSVLWDVHL---FMAC-AGRHRTTEE  304 (334)
T ss_dssp             -SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--CHHHHHHHHHH---HHHH-SCCCCBHHH
T ss_pred             -CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhHHhhhHh---HhhC-CCcCCCHHH
Confidence             6799999999999998877  9999999999999999999877543211  22222211111   0001 234568999


Q ss_pred             HHHHHHHCCCEEEEEEEece
Q 018003          324 LKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      |+++++++||++++....+.
T Consensus       305 ~~~ll~~aGf~~~~~~~~~~  324 (334)
T 2ip2_A          305 VVDLLGRGGFAVERIVDLPM  324 (334)
T ss_dssp             HHHHHHHTTEEEEEEEEETT
T ss_pred             HHHHHHHCCCceeEEEECCC
Confidence            99999999999988776544

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.77  E-value=7.6e-18  Score=153.08  Aligned_cols=155  Identities=16%  Similarity=0.128  Sum_probs=116.9

Q ss_pred             HHHhhcC-CCCCCeEEEEcCcc---chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          168 LMKGYLK-PVLGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       168 ~l~~~l~-~~~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .+.+++. .....+|||||||+   |.++..+.+..+..+|+++|+|+.|++.|++++...     .++.++++|+.+.+
T Consensus        67 ~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~-----~~v~~~~~D~~~~~  141 (274)
T 2qe6_A           67 RGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD-----PNTAVFTADVRDPE  141 (274)
T ss_dssp             HHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC-----TTEEEEECCTTCHH
T ss_pred             HHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC-----CCeEEEEeeCCCch
Confidence            3444443 23347999999999   998888877777789999999999999999987543     68999999997632


Q ss_pred             -----------CCCCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccc
Q 018003          244 -----------FASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLK  310 (362)
Q Consensus       244 -----------~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (362)
                                 ++..+||+|++..+|||+++  +..+|+++.++|||||+|++.+...+..    .....+...+.   .
T Consensus       142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~~----~~~~~~~~~~~---~  214 (274)
T 2qe6_A          142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTGL----PAQQKLARITR---E  214 (274)
T ss_dssp             HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSSC----HHHHHHHHHHH---H
T ss_pred             hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcch----HHHHHHHHHHH---h
Confidence                       22357999999999999987  8899999999999999999999876421    11122222111   0


Q ss_pred             ccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          311 IVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       311 ~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                      ... ...+++.+++.++|  .||++++
T Consensus       215 ~~~-~~~~~s~~ei~~~l--~G~~l~~  238 (274)
T 2qe6_A          215 NLG-EGWARTPEEIERQF--GDFELVE  238 (274)
T ss_dssp             HHS-CCCCBCHHHHHHTT--TTCEECT
T ss_pred             cCC-CCccCCHHHHHHHh--CCCeEcc
Confidence            111 35668999999999  5997764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.77  E-value=2.4e-18  Score=150.56  Aligned_cols=114  Identities=15%  Similarity=0.227  Sum_probs=100.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+...+...++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|++++...     .++.++++|+..++ ++
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~-----~~~~~~~~d~~~~~-~~  112 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRW-----SHISWAATDILQFS-TA  112 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTC-----SSEEEEECCTTTCC-CS
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccC-----CCeEEEEcchhhCC-CC
Confidence            3444556666788999999999999999999875  9999999999999999987654     48999999999988 67


Q ss_pred             CcceEEEecccccCCCCH---HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          247 SSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++||+|++..+++|++++   ..+++++.++|||||.+++.++..
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            899999999999999998   467999999999999999988753

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.77  E-value=1.4e-18  Score=159.16  Aligned_cols=160  Identities=16%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             HHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC-------------C--
Q 018003          167 ELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-------------K--  229 (362)
Q Consensus       167 ~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------------~--  229 (362)
                      ..+.+.+..  .++.+|||||||+|.+...++.. ...+|+|+|+|+.|++.|++++....+..             .  
T Consensus        59 ~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           59 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHhCCCCCCCCeEEEECCCcChHHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            344444432  35789999999999955443332 23499999999999999998654320000             0  


Q ss_pred             ------------CCEEEEEecCCC-CCC-----CCCcceEEEecccccC----CCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          230 ------------ENFLLVRADISR-LPF-----ASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       230 ------------~~~~~~~~d~~~-~p~-----~~~~fD~V~~~~vl~h----~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                                  ..+.++.+|+.. +|+     ++++||+|+++.+++|    ++++..+|+++.++|||||+|++....
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~  217 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGAL  217 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence                        015677789987 654     3467999999999999    667889999999999999999998643


Q ss_pred             cCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          288 VDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      .......               .....+..+++.+++.++|+++||++++.....
T Consensus       218 ~~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          218 EESWYLA---------------GEARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             SCCEEEE---------------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CcceEEc---------------CCeeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence            3211000               000113567899999999999999888776554

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.77  E-value=5.2e-18  Score=159.55  Aligned_cols=169  Identities=12%  Similarity=0.050  Sum_probs=122.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+...++.+|||||||+|.++..+++..+..+++++|++ .++.  +++.+..  ....++.++.+|+. .+++ 
T Consensus       174 ~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~--~~~~~v~~~~~d~~-~~~p-  246 (348)
T 3lst_A          174 LILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAP--DVAGRWKVVEGDFL-REVP-  246 (348)
T ss_dssp             HHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCG--GGTTSEEEEECCTT-TCCC-
T ss_pred             HHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccccc--CCCCCeEEEecCCC-CCCC-
Confidence            34556666667889999999999999999999888899999994 4444  2222111  12467999999996 3444 


Q ss_pred             CcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                       +||+|++.+++||++|+  ..+|++++++|||||++++.++..+...  .+..........   .... ....++.++|
T Consensus       247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~--~~~~~~~~d~~~---~~~~-~~~~~t~~e~  319 (348)
T 3lst_A          247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGN--DAHQSKEMDFMM---LAAR-TGQERTAAEL  319 (348)
T ss_dssp             -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSS--SCCHHHHHHHHH---HHTT-SCCCCBHHHH
T ss_pred             -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CcchhhhcChhh---hhcC-CCcCCCHHHH
Confidence             79999999999999988  5999999999999999999987664321  111111111111   1111 3456899999


Q ss_pred             HHHHHHCCCEEEEEEEeceeEEEEe
Q 018003          325 KRIFRQFQLVVNLKLFYGHIQHYIV  349 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g~~~~~~~  349 (362)
                      +++++++||++++....+.....+.
T Consensus       320 ~~ll~~aGf~~~~~~~~~~~~~vie  344 (348)
T 3lst_A          320 EPLFTAAGLRLDRVVGTSSVMSIAV  344 (348)
T ss_dssp             HHHHHHTTEEEEEEEECSSSCEEEE
T ss_pred             HHHHHHCCCceEEEEECCCCcEEEE
Confidence            9999999999998877544433333

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.77  E-value=1.7e-17  Score=157.18  Aligned_cols=165  Identities=10%  Similarity=0.003  Sum_probs=122.5

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+.+.+. ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..++.++.+|+.+ |++
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p  260 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA---------FSGVEHLGGDMFD-GVP  260 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCC
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh---------cCCCEEEecCCCC-CCC
Confidence            34555554 45578999999999999999999988889999999 888877764         3689999999986 666


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcch--hhhHHHHHhhhhcccccccccccCCH
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      .+  |+|++.+++||++++.  .+|++++++|||||++++.+...+......  ............  .... ....++.
T Consensus       261 ~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~-~g~~rt~  335 (368)
T 3reo_A          261 KG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALML--AYNP-GGKERTE  335 (368)
T ss_dssp             CC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHH--HHSS-BCCCCCH
T ss_pred             CC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHH--hhcC-CCccCCH
Confidence            54  9999999999998775  789999999999999999988764322111  111111111110  0111 3456789


Q ss_pred             HHHHHHHHHCCCEEEEEEEeceeEEE
Q 018003          322 DDLKRIFRQFQLVVNLKLFYGHIQHY  347 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g~~~~~  347 (362)
                      ++|+++|+++||+.++..........
T Consensus       336 ~e~~~ll~~AGF~~v~~~~~~~~~~v  361 (368)
T 3reo_A          336 KEFQALAMASGFRGFKVASCAFNTYV  361 (368)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEETTEEE
T ss_pred             HHHHHHHHHCCCeeeEEEEeCCCcEE
Confidence            99999999999999887766544333

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.76  E-value=3.4e-17  Score=140.17  Aligned_cols=127  Identities=19%  Similarity=0.200  Sum_probs=109.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++        ..++.++++|+..+++++++||+|++.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQD--------FPEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------CTTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHh--------CCCCcEEEcccccCCCCCCceeEEEEC
Confidence            3578999999999999999999864  999999999999999986        356899999999988888899999998


Q ss_pred             -ccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003          256 -AAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       256 -~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                       .+++|+.+  ...+++++.++|||||.+++..+..                            ..++.+++.++++++|
T Consensus       115 ~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~----------------------------~~~~~~~~~~~l~~~G  166 (195)
T 3cgg_A          115 GNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG----------------------------RGWVFGDFLEVAERVG  166 (195)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT----------------------------SSCCHHHHHHHHHHHT
T ss_pred             CcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC----------------------------CCcCHHHHHHHHHHcC
Confidence             78999853  4789999999999999999987642                            1257789999999999


Q ss_pred             CEEEEEEE
Q 018003          333 LVVNLKLF  340 (362)
Q Consensus       333 f~~v~~~~  340 (362)
                      |++++...
T Consensus       167 f~~~~~~~  174 (195)
T 3cgg_A          167 LELENAFE  174 (195)
T ss_dssp             EEEEEEES
T ss_pred             CEEeeeec
Confidence            99877644

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.75  E-value=2.8e-17  Score=165.14  Aligned_cols=168  Identities=10%  Similarity=0.097  Sum_probs=126.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCC---CCCCCEEEEEecC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN---FPKENFLLVRADI  239 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~d~  239 (362)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+|+.|++.|++++....+   ....++.++++|+
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa  787 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSI  787 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCT
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECch
Confidence            335556666665678899999999999999999987 446999999999999999997654311   1245899999999


Q ss_pred             CCCCCCCCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHH-------H--Hhhhhc
Q 018003          240 SRLPFASSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-------R--QVCFLD  308 (362)
Q Consensus       240 ~~~p~~~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~-------~--~~~~~~  308 (362)
                      ..+++.+++||+|++..+++|++++.  .+++++.++|||| .+++.+++.+.    ...+..+       .  ......
T Consensus       788 ~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~ey----N~lF~~Lnp~tr~~dPd~~~~~~  862 (950)
T 3htx_A          788 LEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEF----NTILQRSTPETQEENNSEPQLPK  862 (950)
T ss_dssp             TSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGG----HHHHTCC------------CCSS
T ss_pred             HhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchh----hhhhhhccccccccccccccccc
Confidence            99999889999999999999999876  5899999999999 89999987632    1111111       0  000111


Q ss_pred             ccccccccccCCHHHHHH----HHHHCCCEEEE
Q 018003          309 LKIVGFSIPVLGFDDLKR----IFRQFQLVVNL  337 (362)
Q Consensus       309 ~~~~~~~~~~~s~~~l~~----ll~~~Gf~~v~  337 (362)
                      +.... |...|+.++++.    +.++.||.+.-
T Consensus       863 fRh~D-HrFEWTReEFr~Wae~LAer~GYsVef  894 (950)
T 3htx_A          863 FRNHD-HKFEWTREQFNQWASKLGKRHNYSVEF  894 (950)
T ss_dssp             CSCSS-CSCCBCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             ccccC-cceeecHHHHHHHHHHHHHhcCcEEEE
Confidence            12223 566688888887    77888996643

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.75  E-value=5.4e-17  Score=152.83  Aligned_cols=176  Identities=11%  Similarity=0.073  Sum_probs=133.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.+......+|||||||+|.++..++++.|..+++..|. +.+++.|++++...   ...+++++.+|+...|.+ 
T Consensus       169 ~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~---~~~rv~~~~gD~~~~~~~-  243 (353)
T 4a6d_A          169 RSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQ---EEEQIDFQEGDFFKDPLP-  243 (353)
T ss_dssp             HHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----CCSEEEEESCTTTSCCC-
T ss_pred             HHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhc---ccCceeeecCccccCCCC-
Confidence            4455555555678999999999999999999999999999998 88999999886543   257899999999876654 


Q ss_pred             CcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                       .+|+|++.++||+++|+.  .+|+++++.|+|||++++.+...+.. ...+.........+   .... .....|.++|
T Consensus       244 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~-~~~~~~~~~~dl~m---l~~~-~g~ert~~e~  317 (353)
T 4a6d_A          244 -EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDED-RRGPLLTQLYSLNM---LVQT-EGQERTPTHY  317 (353)
T ss_dssp             -CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTT-SCCCHHHHHHHHHH---HHSS-SCCCCCHHHH
T ss_pred             -CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCC-CCCCHHHHHHHHHH---HHhC-CCcCCCHHHH
Confidence             479999999999999884  78999999999999999998876432 22233333222221   1111 2345799999


Q ss_pred             HHHHHHCCCEEEEEEEecee-EEEEeeCcc
Q 018003          325 KRIFRQFQLVVNLKLFYGHI-QHYIVKIPS  353 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g~~-~~~~~~kp~  353 (362)
                      +++|+++||+.++++..+.. ..++++|-.
T Consensus       318 ~~ll~~AGf~~v~v~~~~~~~~~i~ArKgt  347 (353)
T 4a6d_A          318 HMLLSSAGFRDFQFKKTGAIYDAILARKGT  347 (353)
T ss_dssp             HHHHHHHTCEEEEEECCSSSCEEEEEECCC
T ss_pred             HHHHHHCCCceEEEEEcCCceEEEEEEecC
Confidence            99999999999988766554 566677653

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.75  E-value=3.2e-18  Score=157.71  Aligned_cols=164  Identities=16%  Similarity=0.146  Sum_probs=112.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC----CCCEEEEEecC------CCC--CC
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP----KENFLLVRADI------SRL--PF  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~~~~~~~~d~------~~~--p~  244 (362)
                      ++.+|||||||+|..+..++..+ ..+|+|+|+|+.|++.|+++..... ..    ..++.+.++|+      ..+  ++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~-~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~  125 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLN-SGIKTKYYKFDYIQETIRSDTFVSSVREVF  125 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHC-C----CCCEEEEEECCTTSSSHHHHHHTTC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhcc-ccccccccccchhhhhcccchhhhhhhccc
Confidence            47899999999998666555554 3489999999999999999877650 00    00267888887      222  34


Q ss_pred             CCCcceEEEecccccCC---CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcc---------------hhhhHHHH---H
Q 018003          245 ASSSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---------------IPFSRLLR---Q  303 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~---~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~---------------~~~~~~~~---~  303 (362)
                      ++++||+|+|..++||+   .+...+|++++++|||||++++.+++.......               ..+. ...   .
T Consensus       126 ~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~  204 (302)
T 2vdw_A          126 YFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYM-SVEKIAD  204 (302)
T ss_dssp             CSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEE-EECEEET
T ss_pred             cCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCccccccccccccee-eeccccc
Confidence            57899999999999876   355799999999999999999999875321100               0000 000   0


Q ss_pred             -h---hhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          304 -V---CFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       304 -~---~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                       .   +............+.+.+++.++++++||+.+....+..
T Consensus       205 ~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~  248 (302)
T 2vdw_A          205 DRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFAT  248 (302)
T ss_dssp             TEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHH
T ss_pred             cccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHH
Confidence             0   000000111123467889999999999999988876543

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.75  E-value=2.4e-17  Score=156.43  Aligned_cols=156  Identities=12%  Similarity=0.027  Sum_probs=119.0

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+.+.+. ..++.+|||||||+|.++..+++.++..+++++|+ +.+++.|++         ..++.++.+|+.. +++
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~  266 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP---------LSGIEHVGGDMFA-SVP  266 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCC
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh---------cCCCEEEeCCccc-CCC
Confidence            34444544 45578999999999999999999988889999999 889887764         3579999999977 655


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhh---hHHHHHhhhhcccccccccccCC
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                      .  ||+|++..++||++|+.  .+|++++++|||||++++.++..+... ..+.   .........   .... ....++
T Consensus       267 ~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~d~~~---~~~~-~~~~~t  339 (372)
T 1fp1_D          267 Q--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEP-NTSEESKLVSTLDNLM---FITV-GGRERT  339 (372)
T ss_dssp             C--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSC-CSSHHHHHHHHHHHHH---HHHH-SCCCEE
T ss_pred             C--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC-ccchHHHHHHHhhHHH---Hhcc-CCccCC
Confidence            4  99999999999999988  999999999999999999987654321 1111   111111111   0011 235579


Q ss_pred             HHHHHHHHHHCCCEEEEEEE
Q 018003          321 FDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      .++|+++++++||++++...
T Consensus       340 ~~e~~~ll~~aGf~~~~~~~  359 (372)
T 1fp1_D          340 EKQYEKLSKLSGFSKFQVAC  359 (372)
T ss_dssp             HHHHHHHHHHTTCSEEEEEE
T ss_pred             HHHHHHHHHHCCCceEEEEE
Confidence            99999999999999888766

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.75  E-value=1.3e-17  Score=148.72  Aligned_cols=151  Identities=15%  Similarity=0.033  Sum_probs=114.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC-----Ccce
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS-----SSID  250 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~-----~~fD  250 (362)
                      .++.+|||+|||+|.++..+++.++  +|+|+|+|+.+++.|++++.      ..++.++++|+..++...     ..||
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~~d  126 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENT------AANISYRLLDGLVPEQAAQIHSEIGDA  126 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSC------CTTEEEEECCTTCHHHHHHHHHHHCSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCc------ccCceEEECcccccccccccccccCcc
Confidence            4578999999999999999999987  99999999999999999752      348999999998865432     2499


Q ss_pred             EEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh------cccccccccccCCHH
Q 018003          251 AVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL------DLKIVGFSIPVLGFD  322 (362)
Q Consensus       251 ~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~  322 (362)
                      +|++..+++|++  ++..+++++.++|||||++++.++....    ..++..+......      .....+.....++.+
T Consensus       127 ~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (245)
T 3ggd_A          127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC----IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAE  202 (245)
T ss_dssp             EEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH----HHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHH
T ss_pred             EEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc----cHHHHHHHhCCCCCchhhhhccccCCCCCccCHH
Confidence            999999999998  7889999999999999999999886532    1222221111000      000001123457999


Q ss_pred             HHHHHHHHCCCEEEEEEE
Q 018003          323 DLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~  340 (362)
                      ++.+++  +||+++....
T Consensus       203 ~~~~~~--aGf~~~~~~~  218 (245)
T 3ggd_A          203 DIELYF--PDFEILSQGE  218 (245)
T ss_dssp             HHHHHC--TTEEEEEEEC
T ss_pred             HHHHHh--CCCEEEeccc
Confidence            999999  9999887543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.75  E-value=2.5e-17  Score=147.50  Aligned_cols=114  Identities=23%  Similarity=0.344  Sum_probs=94.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.......++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|++++...    ..++.++++|+..++++ 
T Consensus        31 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~-  103 (252)
T 1wzn_A           31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-  103 (252)
T ss_dssp             HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-
T ss_pred             HHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhc----CCceEEEECChhhcccC-
Confidence            3344444445678999999999999999999865  9999999999999999988765    34799999999888764 


Q ss_pred             CcceEEEecc-cccCCC--CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          247 SSIDAVHAGA-AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       247 ~~fD~V~~~~-vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++||+|++.. +++|+.  ++..+++++.++|||||.+++..++
T Consensus       104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            6899999874 455553  4568999999999999999998776

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.75  E-value=4.4e-17  Score=154.07  Aligned_cols=162  Identities=14%  Similarity=0.037  Sum_probs=121.4

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+.+.+. ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.|++         ..++.++.+|+.. |++
T Consensus       190 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~D~~~-~~p  258 (364)
T 3p9c_A          190 KKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ---------FPGVTHVGGDMFK-EVP  258 (364)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------CTTEEEEECCTTT-CCC
T ss_pred             HHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh---------cCCeEEEeCCcCC-CCC
Confidence            44555554 55678999999999999999999988889999999 888877664         3689999999987 766


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhh--hHHHHHhhhhcccccccccccCCH
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF--SRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      .+  |+|++.+++||++++.  .+|++++++|||||++++.+...+........  ..........  .... .....+.
T Consensus       259 ~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~--~~~~-~g~~rt~  333 (364)
T 3p9c_A          259 SG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIML--AHNP-GGRERYE  333 (364)
T ss_dssp             CC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHH--HHCS-SCCCCBH
T ss_pred             CC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHH--hccc-CCccCCH
Confidence            54  9999999999998764  88999999999999999998876432111111  1111111110  0111 3456789


Q ss_pred             HHHHHHHHHCCCEEEEEEEecee
Q 018003          322 DDLKRIFRQFQLVVNLKLFYGHI  344 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g~~  344 (362)
                      ++|+++|+++||+.++.......
T Consensus       334 ~e~~~ll~~AGF~~v~~~~~~~~  356 (364)
T 3p9c_A          334 REFQALARGAGFTGVKSTYIYAN  356 (364)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEETT
T ss_pred             HHHHHHHHHCCCceEEEEEcCCc
Confidence            99999999999999887765443

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.75  E-value=1.7e-16  Score=137.54  Aligned_cols=137  Identities=15%  Similarity=0.023  Sum_probs=114.3

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ........+...+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.|+++++..   ...++.++.+|+.
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~  100 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF---VARNVTLVEAFAP  100 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH---TCTTEEEEECCTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh---CCCcEEEEeCChh
Confidence            4455556777788888899999999999999999999987789999999999999999998776   1368999999996


Q ss_pred             CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                      ......++||+|++..+++   ++..+++++.++|||||++++.++..                              -+
T Consensus       101 ~~~~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~  147 (204)
T 3e05_A          101 EGLDDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DT  147 (204)
T ss_dssp             TTCTTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HH
T ss_pred             hhhhcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------cc
Confidence            6543447899999998775   78899999999999999999876532                              12


Q ss_pred             HHHHHHHHHHCCC
Q 018003          321 FDDLKRIFRQFQL  333 (362)
Q Consensus       321 ~~~l~~ll~~~Gf  333 (362)
                      .+.+.++++++||
T Consensus       148 ~~~~~~~l~~~g~  160 (204)
T 3e05_A          148 LTKAVEFLEDHGY  160 (204)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCC
Confidence            3467889999998

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.75  E-value=2.8e-17  Score=150.09  Aligned_cols=137  Identities=15%  Similarity=0.109  Sum_probs=112.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++...    ..++.++++|+..+++ +++||+|++.
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~----~~~~~~~~~d~~~~~~-~~~fD~i~~~  191 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKE----NLNISTALYDINAANI-QENYDFIVST  191 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCGGGCCC-CSCEEEEEEC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHc----CCceEEEEeccccccc-cCCccEEEEc
Confidence            3578999999999999999999875  9999999999999999998876    3389999999998876 7889999999


Q ss_pred             ccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCC
Q 018003          256 AAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQL  333 (362)
Q Consensus       256 ~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf  333 (362)
                      .+++|++++  ..+++++.++|||||.+++..........                 .+......++..++.++++.  |
T Consensus       192 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~~~~--~  252 (286)
T 3m70_A          192 VVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP-----------------CPLPFSFTFAENELKEYYKD--W  252 (286)
T ss_dssp             SSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-----------------CSSCCSCCBCTTHHHHHTTT--S
T ss_pred             cchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC-----------------CCCCccccCCHHHHHHHhcC--C
Confidence            999999655  48999999999999998887765432111                 01113456888899999865  7


Q ss_pred             EEEEE
Q 018003          334 VVNLK  338 (362)
Q Consensus       334 ~~v~~  338 (362)
                      +++..
T Consensus       253 ~~~~~  257 (286)
T 3m70_A          253 EFLEY  257 (286)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66554

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.73  E-value=1.2e-17  Score=146.46  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=110.0

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc-CCCCCCCEEEEEecCCCCCCCCCcce
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPFASSSID  250 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~p~~~~~fD  250 (362)
                      .+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.|++.+.++.+.. ......++.++++|+..+|+.+++ |
T Consensus        22 ~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d  100 (218)
T 3mq2_A           22 QLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-G  100 (218)
T ss_dssp             HHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-E
T ss_pred             HhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-C
Confidence            33455688999999999999999999977789999999999888644333210 001245899999999999987766 7


Q ss_pred             EEEe---cccc--cCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          251 AVHA---GAAI--HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       251 ~V~~---~~vl--~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      .|..   +..+  +|++++..+++++.++|||||++++........ ...+   ...       ..+. ....+..+.+.
T Consensus       101 ~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~---~~~-------~~~~-~~~~~~~~~l~  168 (218)
T 3mq2_A          101 ELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWR-PSVP---EVG-------EHPE-PTPDSADEWLA  168 (218)
T ss_dssp             EEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBT-TBCG---GGT-------TCCC-CCHHHHHHHHH
T ss_pred             EEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccc-cccc---ccc-------cCCc-cchHHHHHHHH
Confidence            6663   2333  388899999999999999999999966543211 1111   000       0000 11112344588


Q ss_pred             HHHHHCCCEEEEEEEec
Q 018003          326 RIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g  342 (362)
                      .+++++||++.+.....
T Consensus       169 ~~l~~aGf~i~~~~~~~  185 (218)
T 3mq2_A          169 PRYAEAGWKLADCRYLE  185 (218)
T ss_dssp             HHHHHTTEEEEEEEEEC
T ss_pred             HHHHHcCCCceeeeccc
Confidence            89999999988776543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.73  E-value=2.5e-17  Score=148.51  Aligned_cols=161  Identities=23%  Similarity=0.255  Sum_probs=115.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+...+.  ++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.|+++..        . .++++|+..+++++
T Consensus        46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~--------~-~~~~~d~~~~~~~~  112 (260)
T 2avn_A           46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGV--------K-NVVEAKAEDLPFPS  112 (260)
T ss_dssp             HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTC--------S-CEEECCTTSCCSCT
T ss_pred             HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcC--------C-CEEECcHHHCCCCC
Confidence            34444444  578999999999999999998865  99999999999999998732        1 28899999999888


Q ss_pred             CcceEEEecccccCC-CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcc---hhhhHHHHHhhhhccccc-----ccccc
Q 018003          247 SSIDAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IPFSRLLRQVCFLDLKIV-----GFSIP  317 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~-~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~  317 (362)
                      ++||+|++..+++|+ +++..+++++.++|||||.+++.+++.......   ...+..............     .....
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSY  192 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEE
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEe
Confidence            999999999877776 789999999999999999999999875210000   000000000010000000     00123


Q ss_pred             cCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          318 VLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       318 ~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +++.+++.++   +||++++......
T Consensus       193 ~~~~~~l~~l---aGf~~~~~~~~~~  215 (260)
T 2avn_A          193 AFKPEDLDSL---EGFETVDIRGIGV  215 (260)
T ss_dssp             CBCGGGGSSC---TTEEEEEEEEECS
T ss_pred             ccCHHHHHHh---cCceEEEEECCCC
Confidence            7899999888   9999887765443

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.72  E-value=6.4e-17  Score=152.35  Aligned_cols=149  Identities=14%  Similarity=0.127  Sum_probs=114.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||||||+|.++..+++..+..+++++|+ +.+++.|++         ..++.++.+|+.. +++  .||+|++.
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~p--~~D~v~~~  253 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG---------SNNLTYVGGDMFT-SIP--NADAVLLK  253 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC---------BTTEEEEECCTTT-CCC--CCSEEEEE
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc---------CCCcEEEeccccC-CCC--CccEEEee
Confidence            3467999999999999999999988789999999 999888765         2469999999966 554  39999999


Q ss_pred             ccccCCCCHH--HHHHHHHhhccC---CcEEEEEEEccCCCCcch--hhhHHHHHhhhhcccccccccccCCHHHHHHHH
Q 018003          256 AAIHCWSSPS--TGVAEISRVLRP---GGVFVGTTYIVDGPFNLI--PFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIF  328 (362)
Q Consensus       256 ~vl~h~~d~~--~~l~~i~r~Lkp---gG~li~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll  328 (362)
                      +++||++|+.  .+|++++++|||   ||++++.++.........  ...........   ...  ....++.++|++++
T Consensus       254 ~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~---~~~--~g~~~t~~e~~~ll  328 (352)
T 1fp2_A          254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM---ACL--NGKERNEEEWKKLF  328 (352)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG---GGG--TCCCEEHHHHHHHH
T ss_pred             hhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHH---Hhc--cCCCCCHHHHHHHH
Confidence            9999999988  999999999999   999999987754321110  11111222111   011  13456899999999


Q ss_pred             HHCCCEEEEEEEec
Q 018003          329 RQFQLVVNLKLFYG  342 (362)
Q Consensus       329 ~~~Gf~~v~~~~~g  342 (362)
                      +++||+.++....+
T Consensus       329 ~~aGf~~~~~~~~~  342 (352)
T 1fp2_A          329 IEAGFQHYKISPLT  342 (352)
T ss_dssp             HHTTCCEEEEEEEE
T ss_pred             HHCCCCeeEEEecC
Confidence            99999988776543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.72  E-value=1.9e-18  Score=153.68  Aligned_cols=104  Identities=10%  Similarity=0.215  Sum_probs=89.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~  253 (362)
                      .+|++|||||||+|..+..+++..+ .+++|+|+|+.+++.|+++....    ..++.++.+|+..+  ++++++||.|+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~----~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhC----CCceEEEeehHHhhcccccccCCceEE
Confidence            4688999999999999999988754 58999999999999999998776    57888999987653  56788999997


Q ss_pred             e-----cccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          254 A-----GAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       254 ~-----~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      .     ..+++|++++..+++++.|+|||||+|++.
T Consensus       134 ~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          134 YDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             ECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             EeeeecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence            4     566788899999999999999999999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.71  E-value=1.6e-16  Score=140.55  Aligned_cols=142  Identities=11%  Similarity=0.075  Sum_probs=107.8

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CCCC
Q 018003          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFA  245 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p~~  245 (362)
                      .+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.++++++..     .++.++.+|+..    .++.
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~  141 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIV  141 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTS
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC-----CCeEEEECCCCCcccccccC
Confidence            4445556788999999999999999998853569999999999999999886543     689999999988    6665


Q ss_pred             CCcceEEEecccccCCCCH---HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHH
Q 018003          246 SSSIDAVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                       ++||+|+     ++++++   ..+++++.++|||||++++........ ...+                   ...+..+
T Consensus       142 -~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~-------------------~~~~~~~  195 (230)
T 1fbn_A          142 -EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSID-VTKD-------------------PKEIFKE  195 (230)
T ss_dssp             -CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC-SSSC-------------------HHHHHHH
T ss_pred             -ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCC-CCCC-------------------HHHhhHH
Confidence             7899998     566777   788999999999999999973221100 0000                   0012236


Q ss_pred             HHHHHHHHCCCEEEEEEEece
Q 018003          323 DLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      ++. +|+++||+.++......
T Consensus       196 ~l~-~l~~~Gf~~~~~~~~~~  215 (230)
T 1fbn_A          196 QKE-ILEAGGFKIVDEVDIEP  215 (230)
T ss_dssp             HHH-HHHHHTEEEEEEEECTT
T ss_pred             HHH-HHHHCCCEEEEEEccCC
Confidence            777 88999999888776543

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.71  E-value=7.2e-17  Score=140.51  Aligned_cols=117  Identities=24%  Similarity=0.320  Sum_probs=99.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+.+.+  .++.+|||+|||+|.++..+++.++. +++|+|+|+.+++.++++...     ..++.++++|+..++
T Consensus        31 ~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~-----~~~i~~~~~d~~~~~  102 (215)
T 2pxx_A           31 SFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAH-----VPQLRWETMDVRKLD  102 (215)
T ss_dssp             HHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTT-----CTTCEEEECCTTSCC
T ss_pred             HHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhccc-----CCCcEEEEcchhcCC
Confidence            3445555555  34789999999999999999998753 899999999999999998654     258999999999988


Q ss_pred             CCCCcceEEEecccccCCC---------------CHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FASSSIDAVHAGAAIHCWS---------------SPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~---------------d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +++++||+|++..+++|+.               ++..+++++.++|||||++++.++..
T Consensus       103 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            8889999999999987765               56799999999999999999988753

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.71  E-value=2.3e-16  Score=136.85  Aligned_cols=139  Identities=14%  Similarity=0.124  Sum_probs=114.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|++++...   ...++.++++|+...+  +++||+|+++
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~--~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALN---GIYDIALQKTSLLADV--DGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT---TCCCCEEEESSTTTTC--CSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc---CCCceEEEeccccccC--CCCceEEEEC
Confidence            357899999999999999988864 469999999999999999998765   1234999999997653  5789999999


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVV  335 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~  335 (362)
                      .++++   ...+++++.++|||||++++.++...                              +.+.+.++++++||+.
T Consensus       133 ~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~~~~~~~Gf~~  179 (205)
T 3grz_A          133 ILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL------------------------------QLPKIEQALAENSFQI  179 (205)
T ss_dssp             SCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTEEE
T ss_pred             CcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc------------------------------cHHHHHHHHHHcCCce
Confidence            88876   47889999999999999999765421                              3557889999999999


Q ss_pred             EEEEEeceeEEEEeeCcc
Q 018003          336 NLKLFYGHIQHYIVKIPS  353 (362)
Q Consensus       336 v~~~~~g~~~~~~~~kp~  353 (362)
                      ++....+.+..++.++|.
T Consensus       180 ~~~~~~~~w~~~~~~~~~  197 (205)
T 3grz_A          180 DLKMRAGRWIGLAISRKH  197 (205)
T ss_dssp             EEEEEETTEEEEEEEECC
T ss_pred             EEeeccCCEEEEEEeccc
Confidence            998888887666666653

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.70  E-value=1.3e-16  Score=140.82  Aligned_cols=123  Identities=14%  Similarity=0.197  Sum_probs=102.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCCCC-CCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLPFA-SSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p~~-~~~fD~V~  253 (362)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++        ..++.++++|+ ..+|++ +++||+|+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~--------~~~~~~~~~d~~~~~~~~~~~~fD~v~  116 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARAN--------APHADVYEWNGKGELPAGLGAPFGLIV  116 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHH--------CTTSEEEECCSCSSCCTTCCCCEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------CCCceEEEcchhhccCCcCCCCEEEEE
Confidence            3578999999999999999999864  999999999999999987        36799999999 678887 88999999


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCC
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQL  333 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf  333 (362)
                      +.      .++..+++++.++|||||+++  .                             .....+...+.++++++||
T Consensus       117 ~~------~~~~~~l~~~~~~LkpgG~l~--~-----------------------------~~~~~~~~~~~~~l~~~Gf  159 (226)
T 3m33_A          117 SR------RGPTSVILRLPELAAPDAHFL--Y-----------------------------VGPRLNVPEVPERLAAVGW  159 (226)
T ss_dssp             EE------SCCSGGGGGHHHHEEEEEEEE--E-----------------------------EESSSCCTHHHHHHHHTTC
T ss_pred             eC------CCHHHHHHHHHHHcCCCcEEE--E-----------------------------eCCcCCHHHHHHHHHHCCC
Confidence            87      477888999999999999999  1                             1223455678999999999


Q ss_pred             EEEEEEEeceeE
Q 018003          334 VVNLKLFYGHIQ  345 (362)
Q Consensus       334 ~~v~~~~~g~~~  345 (362)
                      ..+.........
T Consensus       160 ~~~~~~~~~~~~  171 (226)
T 3m33_A          160 DIVAEDHVSVLA  171 (226)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             eEEEEEeeeecc
Confidence            887766544433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.70  E-value=2e-16  Score=143.50  Aligned_cols=108  Identities=10%  Similarity=0.043  Sum_probs=91.3

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD  250 (362)
                      ..+...++.+|||||||+|.++..+..+.++++|+|+|++++|++.|+++++..  + ..++.++++|+..+|  +++||
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~--g-l~~v~~v~gDa~~l~--d~~FD  190 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL--G-VDGVNVITGDETVID--GLEFD  190 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH--T-CCSEEEEESCGGGGG--GCCCS
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc--C-CCCeEEEECchhhCC--CCCcC
Confidence            345677899999999999987755544445679999999999999999998876  1 278999999998876  78999


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +|++...   .+++..+++++.++|||||++++...
T Consensus       191 vV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          191 VLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             EEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            9998655   57899999999999999999998764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.70  E-value=1.8e-17  Score=147.26  Aligned_cols=107  Identities=9%  Similarity=0.216  Sum_probs=88.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEE
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAV  252 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V  252 (362)
                      ..++.+|||||||+|.++..+++.+. .+++|+|+|+.|++.|+++.+..    ..++.++++|+.++  ++++++||+|
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~~fD~V  132 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTLPDGHFDGI  132 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGSCTTCEEEE
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhc----CCCeEEEecCHHHhhcccCCCceEEE
Confidence            34578999999999999999977553 48999999999999999988765    46899999999887  8888999999


Q ss_pred             Ee-cccc--c--CCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          253 HA-GAAI--H--CWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       253 ~~-~~vl--~--h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ++ .+.+  +  |..++..+++++.++|||||+|++.+.
T Consensus       133 ~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  171 (236)
T 1zx0_A          133 LYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL  171 (236)
T ss_dssp             EECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred             EECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence            99 5553  1  222344779999999999999997643

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.70  E-value=1.6e-16  Score=150.02  Aligned_cols=151  Identities=11%  Similarity=0.070  Sum_probs=115.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++         ..++.++.+|+.. +++  .||+|++.+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~v~~~~~d~~~-~~~--~~D~v~~~~  259 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG---------NENLNFVGGDMFK-SIP--SADAVLLKW  259 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC---------CSSEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc---------CCCcEEEeCccCC-CCC--CceEEEEcc
Confidence            467999999999999999999988889999999 788877654         3569999999987 655  499999999


Q ss_pred             cccCCCCHH--HHHHHHHhhccC---CcEEEEEEEccCCCCcc--hhhhHHHHHhhhhcccccccccccCCHHHHHHHHH
Q 018003          257 AIHCWSSPS--TGVAEISRVLRP---GGVFVGTTYIVDGPFNL--IPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR  329 (362)
Q Consensus       257 vl~h~~d~~--~~l~~i~r~Lkp---gG~li~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~  329 (362)
                      ++||++|+.  .+|++++++|||   ||++++.++........  ............   .... ....++.++|+++++
T Consensus       260 vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~---~~~~-~g~~~t~~e~~~ll~  335 (358)
T 1zg3_A          260 VLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVM---LTMF-LGKERTKQEWEKLIY  335 (358)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHH---HHHH-SCCCEEHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHH---hccC-CCCCCCHHHHHHHHH
Confidence            999999987  999999999999   99999988765432111  011122111111   0011 245679999999999


Q ss_pred             HCCCEEEEEEEecee
Q 018003          330 QFQLVVNLKLFYGHI  344 (362)
Q Consensus       330 ~~Gf~~v~~~~~g~~  344 (362)
                      ++||+.++....+..
T Consensus       336 ~aGf~~~~~~~~~~~  350 (358)
T 1zg3_A          336 DAGFSSYKITPISGF  350 (358)
T ss_dssp             HTTCCEEEEEEETTT
T ss_pred             HcCCCeeEEEecCCC
Confidence            999998887765443

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.70  E-value=7.6e-17  Score=149.31  Aligned_cols=159  Identities=20%  Similarity=0.207  Sum_probs=115.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC----CCCCCEEEEEecCCCCC----CC--C
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----FPKENFLLVRADISRLP----FA--S  246 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~d~~~~p----~~--~  246 (362)
                      ++.+|||+|||+|.++..+++.+ ..+++|+|+|+.+++.|+++......    ....++.++++|+..++    ++  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            57799999999999999988753 46999999999999999998765300    01347899999998876    53  4


Q ss_pred             CcceEEEecccccCC-CC---HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHh----hhh--------c--
Q 018003          247 SSIDAVHAGAAIHCW-SS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQV----CFL--------D--  308 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~-~d---~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~----~~~--------~--  308 (362)
                      ++||+|++..++||+ .+   +..+++++.++|||||.+++.+++.+.      +...+...    +..        +  
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~f~~~~  186 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE------LIRRLEASETESFGNEIYTVKFQKKG  186 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH------HHHHHTTSSSSEEECSSEEEEESCSS
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH------HHHHHHhhccCccCCeeEEEEeCCCC
Confidence            589999999999988 44   568999999999999999999986521      00100000    000        0  


Q ss_pred             ----------ccc---cccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          309 ----------LKI---VGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       309 ----------~~~---~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                                +..   ........+.+++.++++++||+.+....+.
T Consensus       187 ~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f~  233 (313)
T 3bgv_A          187 DYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKTFL  233 (313)
T ss_dssp             CCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEEHH
T ss_pred             CCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecCHH
Confidence                      000   0001234678999999999999999877654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.69  E-value=1.8e-15  Score=131.36  Aligned_cols=139  Identities=14%  Similarity=0.074  Sum_probs=109.6

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .......+...+...++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|+++++..  +...++.++.+|+..
T Consensus        40 ~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~  115 (204)
T 3njr_A           40 KSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTY--GLSPRMRAVQGTAPA  115 (204)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCTTG
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHc--CCCCCEEEEeCchhh
Confidence            34444567777777888999999999999999999884  59999999999999999988765  112379999999987


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      .......||+|++..++    ++. +++++.++|||||++++.....+                              +.
T Consensus       116 ~~~~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~------------------------------~~  160 (204)
T 3njr_A          116 ALADLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE------------------------------SE  160 (204)
T ss_dssp             GGTTSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH------------------------------HH
T ss_pred             hcccCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc------------------------------cH
Confidence            43334579999987754    566 99999999999999998875421                              23


Q ss_pred             HHHHHHHHHCCCEEEEEE
Q 018003          322 DDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~  339 (362)
                      ..+.+++++.|+++....
T Consensus       161 ~~~~~~l~~~g~~i~~i~  178 (204)
T 3njr_A          161 TLLTQLHARHGGQLLRID  178 (204)
T ss_dssp             HHHHHHHHHHCSEEEEEE
T ss_pred             HHHHHHHHhCCCcEEEEE
Confidence            467788889998765543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.69  E-value=5.6e-16  Score=130.90  Aligned_cols=118  Identities=17%  Similarity=0.156  Sum_probs=95.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-  241 (362)
                      ......+.+.+...++.+|||+|||+|.++..+++..+..+++|+|+++.+++.|++++...  +...++ ++.+|... 
T Consensus        11 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~-~~~~d~~~~   87 (178)
T 3hm2_A           11 QHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL--GVSDRI-AVQQGAPRA   87 (178)
T ss_dssp             HHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--TCTTSE-EEECCTTGG
T ss_pred             HHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--CCCCCE-EEecchHhh
Confidence            33445666777777888999999999999999999866679999999999999999988765  122378 88888744 


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++...++||+|++..+++|    ..+++++.++|||||++++.+..
T Consensus        88 ~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           88 FDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             GGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             hhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeec
Confidence            3332378999999999988    67899999999999999988754

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.68  E-value=5e-16  Score=136.66  Aligned_cols=144  Identities=13%  Similarity=0.121  Sum_probs=109.7

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---CCCCCC
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS  247 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~p~~~~  247 (362)
                      .+..+||.+|||+|||+|.++..+++. |+.+.|+|+|++++|++.+++++++.     .++..+.+|...   .++..+
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~-----~ni~~V~~d~~~p~~~~~~~~  146 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR-----RNIFPILGDARFPEKYRHLVE  146 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC-----TTEEEEESCTTCGGGGTTTCC
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh-----cCeeEEEEeccCccccccccc
Confidence            456788999999999999999999987 78889999999999999999887664     689999998865   345678


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI  327 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l  327 (362)
                      ++|+|++.  +.|..++..++.++.+.|||||+++++......     ..            .... . ..  .+...+.
T Consensus       147 ~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-----d~------------~~p~-~-~~--~~~ev~~  203 (233)
T 4df3_A          147 GVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI-----DV------------TTEP-S-EV--YKREIKT  203 (233)
T ss_dssp             CEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH-----HH------------HTCC-C-HH--HHHHHHH
T ss_pred             eEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC-----CC------------CCCh-H-HH--HHHHHHH
Confidence            89999863  455567889999999999999999987643210     00            0000 0 00  1234567


Q ss_pred             HHHCCCEEEEEEEece
Q 018003          328 FRQFQLVVNLKLFYGH  343 (362)
Q Consensus       328 l~~~Gf~~v~~~~~g~  343 (362)
                      |+++||+.++......
T Consensus       204 L~~~GF~l~e~i~L~p  219 (233)
T 4df3_A          204 LMDGGLEIKDVVHLDP  219 (233)
T ss_dssp             HHHTTCCEEEEEECTT
T ss_pred             HHHCCCEEEEEEccCC
Confidence            8899999988876543

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.68  E-value=9.4e-16  Score=134.01  Aligned_cols=107  Identities=20%  Similarity=0.135  Sum_probs=91.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~  254 (362)
                      ++.+|||+|||+|.++..+++..+..+++|+|+++.+++.|++++...   ...++.++++|+..++  +++++||+|++
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~D~i~~  117 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV---GVPNIKLLWVDGSDLTDYFEDGEIDRLYL  117 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---CCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHhhcCCCCCCEEEE
Confidence            467999999999999999999987789999999999999999998776   1368999999999877  77889999999


Q ss_pred             cccccCCC--------CHHHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~--------d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +....+..        ....+++++.++|||||.+++.+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  157 (214)
T 1yzh_A          118 NFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  157 (214)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC
Confidence            86543322        125799999999999999999764

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.68  E-value=1.6e-16  Score=140.14  Aligned_cols=155  Identities=14%  Similarity=0.057  Sum_probs=100.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCC-HHHHHHH---HHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcce
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQC---YEFVQQESNFPKENFLLVRADISRLPFA-SSSID  250 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s-~~~~~~a---~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD  250 (362)
                      .++.+|||||||+|.++..+++..++.+|+|+|+| +.|++.|   ++++...   ...++.++++|++.+|.. .+.+|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~---~~~~v~~~~~d~~~l~~~~~d~v~   99 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKG---GLSNVVFVIAAAESLPFELKNIAD   99 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGT---CCSSEEEECCBTTBCCGGGTTCEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHc---CCCCeEEEEcCHHHhhhhccCeEE
Confidence            35779999999999999999977777799999999 7777776   6655443   246899999999988632 14455


Q ss_pred             EEEeccccc----C-CCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          251 AVHAGAAIH----C-WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       251 ~V~~~~vl~----h-~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      .|.++....    | ..++..++++++|+|||||++++.+...+.. ...++.  .. ...    . . ...++..+++.
T Consensus       100 ~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~~--~~-~~~----~-~-~~~~~~~~el~  169 (225)
T 3p2e_A          100 SISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEAEIK--KR-GLP----L-L-SKAYFLSEQYK  169 (225)
T ss_dssp             EEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-----------------------C-CHHHHHSHHHH
T ss_pred             EEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhchhh--hc-CCC----C-C-ChhhcchHHHH
Confidence            555443211    1 1244578999999999999999955433221 111100  00 000    0 0 11122233599


Q ss_pred             HHHHHCCCEEEEEEEece
Q 018003          326 RIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g~  343 (362)
                      .+++++||++.....++.
T Consensus       170 ~~l~~aGf~v~~~~~~~~  187 (225)
T 3p2e_A          170 AELSNSGFRIDDVKELDN  187 (225)
T ss_dssp             HHHHHHTCEEEEEEEECH
T ss_pred             HHHHHcCCCeeeeeecCH
Confidence            999999999888776653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.67  E-value=1.8e-15  Score=129.20  Aligned_cols=119  Identities=14%  Similarity=0.164  Sum_probs=100.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCC--EEEEEecCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADISR  241 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--~~~~~~d~~~  241 (362)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.+++++...   ...+  +.++.+|+..
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~---~~~~~~~~~~~~d~~~  113 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLN---NLDNYDIRVVHSDLYE  113 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT---TCTTSCEEEEECSTTT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHc---CCCccceEEEECchhc
Confidence            455777788877788999999999999999998884  59999999999999999988765   1233  9999999977


Q ss_pred             CCCCCCcceEEEecccccC-CCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          242 LPFASSSIDAVHAGAAIHC-WSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h-~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      . +++++||+|++..+++| ..+...+++++.++|||||.+++.++..
T Consensus       114 ~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  160 (194)
T 1dus_A          114 N-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             T-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             c-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            3 45678999999998887 3456789999999999999999998763

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.67  E-value=7.3e-16  Score=138.17  Aligned_cols=158  Identities=14%  Similarity=0.054  Sum_probs=112.5

Q ss_pred             HHHhhcCC-CCCCeEEEEcCcc--c-hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          168 LMKGYLKP-VLGGNIIDASCGS--G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       168 ~l~~~l~~-~~~~~vLDiGcG~--G-~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      +..+++.. ....+|||||||+  + .....+.+..+..+|+++|.|+.|++.|++++...   ...++.++++|+.+++
T Consensus        68 rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---~~~~~~~v~aD~~~~~  144 (277)
T 3giw_A           68 RAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---PEGRTAYVEADMLDPA  144 (277)
T ss_dssp             HHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---SSSEEEEEECCTTCHH
T ss_pred             HHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---CCCcEEEEEecccChh
Confidence            44444542 2346899999997  3 34444444567789999999999999999988653   1247999999998852


Q ss_pred             ------CCCCcce-----EEEecccccCCCC---HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcc
Q 018003          244 ------FASSSID-----AVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL  309 (362)
Q Consensus       244 ------~~~~~fD-----~V~~~~vl~h~~d---~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (362)
                            ...+.||     +|+++.+|||++|   |..+++++.+.|+|||+|++++...+..   ......+...+.   
T Consensus       145 ~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~---p~~~~~~~~~~~---  218 (277)
T 3giw_A          145 SILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA---PQEVGRVAREYA---  218 (277)
T ss_dssp             HHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS---HHHHHHHHHHHH---
T ss_pred             hhhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC---HHHHHHHHHHHH---
Confidence                  1134566     6889999999998   5789999999999999999999876521   111222222221   


Q ss_pred             cccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          310 KIVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       310 ~~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                       ..+....+.+.+++..+|.  ||+.++
T Consensus       219 -~~g~p~~~rs~~ei~~~f~--Glelve  243 (277)
T 3giw_A          219 -ARNMPMRLRTHAEAEEFFE--GLELVE  243 (277)
T ss_dssp             -HTTCCCCCCCHHHHHHTTT--TSEECT
T ss_pred             -hcCCCCccCCHHHHHHHhC--CCcccC
Confidence             1121357789999999994  998643

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.67  E-value=8.2e-16  Score=134.26  Aligned_cols=126  Identities=15%  Similarity=0.200  Sum_probs=103.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+.     .+++|+|+++.                  ++.++++|+..+|+++++||+|++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~------------------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL------------------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS------------------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC------------------CceEEEeccccCCCCCCCEeEEEEe
Confidence            457899999999999988772     38999999985                  3457899999998888999999999


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVV  335 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~  335 (362)
                      .++|| .++..+++++.++|||||.+++.++..                            .+.+.+++.++++++||++
T Consensus       123 ~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~----------------------------~~~~~~~~~~~l~~~Gf~~  173 (215)
T 2zfu_A          123 LSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS----------------------------RFEDVRTFLRAVTKLGFKI  173 (215)
T ss_dssp             SCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG----------------------------GCSCHHHHHHHHHHTTEEE
T ss_pred             hhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC----------------------------CCCCHHHHHHHHHHCCCEE
Confidence            99975 899999999999999999999987531                            2237889999999999998


Q ss_pred             EEEEEec-eeEEEEeeCcc
Q 018003          336 NLKLFYG-HIQHYIVKIPS  353 (362)
Q Consensus       336 v~~~~~g-~~~~~~~~kp~  353 (362)
                      +.....+ ....+..+|..
T Consensus       174 ~~~~~~~~~~~~~~~~k~~  192 (215)
T 2zfu_A          174 VSKDLTNSHFFLFDFQKTG  192 (215)
T ss_dssp             EEEECCSTTCEEEEEEECS
T ss_pred             EEEecCCCeEEEEEEEecC
Confidence            8765443 44666666653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.66  E-value=1.3e-15  Score=128.32  Aligned_cols=126  Identities=14%  Similarity=0.080  Sum_probs=101.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+++.+   +++|+|+|+.|++.       .     .++.++++|+.. ++++++||+|+++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-------~-----~~~~~~~~d~~~-~~~~~~fD~i~~n   85 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-------H-----RGGNLVRADLLC-SINQESVDVVVFN   85 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-------C-----SSSCEEECSTTT-TBCGGGCSEEEEC
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-------c-----cCCeEEECChhh-hcccCCCCEEEEC
Confidence            457799999999999999999887   99999999999987       1     468899999987 6667899999999


Q ss_pred             ccccCCCCH---------HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          256 AAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       256 ~vl~h~~d~---------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      ..+++.+++         ..+++++.+.| |||.+++.++..                              .+.+++.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~  134 (170)
T 3q87_B           86 PPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLA  134 (170)
T ss_dssp             CCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHH
T ss_pred             CCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHH
Confidence            998877665         57899999999 999999887532                              23567899


Q ss_pred             HHHHCCCEEEEEEE--eceeEEEE
Q 018003          327 IFRQFQLVVNLKLF--YGHIQHYI  348 (362)
Q Consensus       327 ll~~~Gf~~v~~~~--~g~~~~~~  348 (362)
                      +++++||+.+....  .+.-..+.
T Consensus       135 ~l~~~gf~~~~~~~~~~~~e~~~~  158 (170)
T 3q87_B          135 RLEERGYGTRILKVRKILGETVYI  158 (170)
T ss_dssp             HHHHTTCEEEEEEEEECSSSEEEE
T ss_pred             HHHHCCCcEEEEEeeccCCceEEE
Confidence            99999997655443  34334443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.66  E-value=7e-15  Score=129.69  Aligned_cols=131  Identities=13%  Similarity=0.065  Sum_probs=102.9

Q ss_pred             CCCCCeEEEEcCc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCCCCcceEE
Q 018003          175 PVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAV  252 (362)
Q Consensus       175 ~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~~~~fD~V  252 (362)
                      ..++.+|||+||| +|.++..+++.. ..+|+|+|+++.+++.|++++...    ..++.++++|+..+ ++++++||+|
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~----~~~v~~~~~d~~~~~~~~~~~fD~I  127 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERN----NSNVRLVKSNGGIIKGVVEGTFDVI  127 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHT----TCCCEEEECSSCSSTTTCCSCEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHh----CCCcEEEeCCchhhhhcccCceeEE
Confidence            3458899999999 999999999883 349999999999999999998876    23899999997543 4556899999


Q ss_pred             EecccccCCCC-------------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccc
Q 018003          253 HAGAAIHCWSS-------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVG  313 (362)
Q Consensus       253 ~~~~vl~h~~d-------------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (362)
                      +++...++..+                   ...+++++.++|||||++++..+...                        
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------  183 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE------------------------  183 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH------------------------
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH------------------------
Confidence            99876655433                   46889999999999999999865420                        


Q ss_pred             cccccCCHHHHHHHHHHCCCEEEEEE
Q 018003          314 FSIPVLGFDDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~  339 (362)
                           .....+.+++++.||......
T Consensus       184 -----~~~~~~~~~l~~~g~~~~~~~  204 (230)
T 3evz_A          184 -----KLLNVIKERGIKLGYSVKDIK  204 (230)
T ss_dssp             -----HHHHHHHHHHHHTTCEEEEEE
T ss_pred             -----hHHHHHHHHHHHcCCceEEEE
Confidence                 123568889999999665543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.66  E-value=4.2e-15  Score=129.64  Aligned_cols=106  Identities=17%  Similarity=0.138  Sum_probs=83.0

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCCc
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSS  248 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~~  248 (362)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+|+.|++.+.+..+..     .++.++.+|+...    ++. ++
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~-~~  126 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIV-EK  126 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTC-CC
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC-----CCeEEEEcCCCCchhhcccc-cc
Confidence            3455788999999999999999988754569999999999887666655443     5788999998763    444 78


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ||+|++.. .++ .+...+++++.++|||||++++...
T Consensus       127 fD~V~~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          127 VDLIYQDI-AQK-NQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             EEEEEECC-CST-THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeEEEEec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            99999873 222 2334569999999999999999854

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.65  E-value=7.3e-16  Score=137.19  Aligned_cols=130  Identities=15%  Similarity=0.016  Sum_probs=104.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC---CCcceEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAV  252 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~---~~~fD~V  252 (362)
                      .++.+|||+|||+|.++..++...+..+|+|+|+|+.+++.|+++++..   ...++.++++|+.++++.   +++||+|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~~fD~V  145 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL---QLENTTFCHDRAETFGQRKDVRESYDIV  145 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCEEEEeccHHHhcccccccCCccEE
Confidence            3578999999999999999987666679999999999999999988776   134799999999877653   5789999


Q ss_pred             EecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003          253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      ++..    +.++..+++++.++|||||.+++.....     ..                       -....+.+.++++|
T Consensus       146 ~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~-----~~-----------------------~~~~~~~~~l~~~g  193 (240)
T 1xdz_A          146 TARA----VARLSVLSELCLPLVKKNGLFVALKAAS-----AE-----------------------EELNAGKKAITTLG  193 (240)
T ss_dssp             EEEC----CSCHHHHHHHHGGGEEEEEEEEEEECC------CH-----------------------HHHHHHHHHHHHTT
T ss_pred             EEec----cCCHHHHHHHHHHhcCCCCEEEEEeCCC-----ch-----------------------HHHHHHHHHHHHcC
Confidence            9976    4678999999999999999998763110     00                       01245778899999


Q ss_pred             CEEEEEEE
Q 018003          333 LVVNLKLF  340 (362)
Q Consensus       333 f~~v~~~~  340 (362)
                      |+..+...
T Consensus       194 ~~~~~~~~  201 (240)
T 1xdz_A          194 GELENIHS  201 (240)
T ss_dssp             EEEEEEEE
T ss_pred             CeEeEEEE
Confidence            98876654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.65  E-value=2.8e-15  Score=136.22  Aligned_cols=152  Identities=12%  Similarity=0.042  Sum_probs=115.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +...+.+.+.+. .++.+|||+|||+|.++..+++..+..+++|+|+|+.+++.|++++...   ...++.++++|+...
T Consensus        96 e~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~---~~~~v~~~~~d~~~~  171 (276)
T 2b3t_A           96 ECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL---AIKNIHILQSDWFSA  171 (276)
T ss_dssp             HHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH---TCCSEEEECCSTTGG
T ss_pred             HHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CCCceEEEEcchhhh
Confidence            344566666665 4577999999999999999998866779999999999999999998776   124799999999763


Q ss_pred             CCCCCcceEEEec-------------ccccCCC------------CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhh
Q 018003          243 PFASSSIDAVHAG-------------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF  297 (362)
Q Consensus       243 p~~~~~fD~V~~~-------------~vl~h~~------------d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~  297 (362)
                       +++++||+|+++             .+++|.+            +...+++++.++|||||++++...           
T Consensus       172 -~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------  239 (276)
T 2b3t_A          172 -LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-----------  239 (276)
T ss_dssp             -GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------
T ss_pred             -cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------
Confidence             446789999998             4555543            346789999999999999998631           


Q ss_pred             hHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE--eceeEEEEee
Q 018003          298 SRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF--YGHIQHYIVK  350 (362)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~--~g~~~~~~~~  350 (362)
                                          +.+.+.+.++++++||+.++...  .|......++
T Consensus       240 --------------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~  274 (276)
T 2b3t_A          240 --------------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR  274 (276)
T ss_dssp             --------------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred             --------------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEE
Confidence                                13456789999999997654432  3444444443

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.65  E-value=6.3e-16  Score=130.80  Aligned_cols=117  Identities=17%  Similarity=0.119  Sum_probs=96.9

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---CCCcc
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSI  249 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---~~~~f  249 (362)
                      ++..+|.+|||+|||.                +++|+|+.|++.|+++..       .++.+.++|+..+++   ++++|
T Consensus         8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~-------~~~~~~~~d~~~~~~~~~~~~~f   64 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTG-------NEGRVSVENIKQLLQSAHKESSF   64 (176)
T ss_dssp             TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTT-------TTSEEEEEEGGGGGGGCCCSSCE
T ss_pred             cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcc-------cCcEEEEechhcCccccCCCCCE
Confidence            3456789999999986                239999999999998742       258999999999887   78899


Q ss_pred             eEEEecccccCC-CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHH
Q 018003          250 DAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIF  328 (362)
Q Consensus       250 D~V~~~~vl~h~-~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll  328 (362)
                      |+|++..++||+ +++..++++++|+|||||++++..+......                    . .....+.+++.++|
T Consensus        65 D~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~--------------------~-~~~~~~~~~~~~~l  123 (176)
T 2ld4_A           65 DIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD--------------------N-NSKVKTASKLCSAL  123 (176)
T ss_dssp             EEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC--------------------S-SSSSCCHHHHHHHH
T ss_pred             eEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc--------------------c-ccccCCHHHHHHHH
Confidence            999999999999 9999999999999999999999766432110                    0 12335789999999


Q ss_pred             HHCCC
Q 018003          329 RQFQL  333 (362)
Q Consensus       329 ~~~Gf  333 (362)
                      +++||
T Consensus       124 ~~aGf  128 (176)
T 2ld4_A          124 TLSGL  128 (176)
T ss_dssp             HHTTC
T ss_pred             HHCCC
Confidence            99999

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.65  E-value=1.2e-15  Score=136.98  Aligned_cols=144  Identities=13%  Similarity=0.078  Sum_probs=114.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+...+  .++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.+++++...    ...+.+..+|+... ++
T Consensus       111 ~~~l~~~~--~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~----~~~v~~~~~d~~~~-~~  181 (254)
T 2nxc_A          111 LKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN----GVRPRFLEGSLEAA-LP  181 (254)
T ss_dssp             HHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT----TCCCEEEESCHHHH-GG
T ss_pred             HHHHHHhc--CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc----CCcEEEEECChhhc-Cc
Confidence            34444443  4578999999999999999999876  9999999999999999998776    22288999988652 44


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|+++...++   ...+++++.++|||||+++++....                              .+.+.+.
T Consensus       182 ~~~fD~Vv~n~~~~~---~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~  228 (254)
T 2nxc_A          182 FGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVR  228 (254)
T ss_dssp             GCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHH
T ss_pred             CCCCCEEEECCcHHH---HHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHH
Confidence            678999999876554   4688999999999999999976532                              1246789


Q ss_pred             HHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003          326 RIFRQFQLVVNLKLFYGHIQHYIVKI  351 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~g~~~~~~~~k  351 (362)
                      ++++++||++++....+.+..+..+|
T Consensus       229 ~~l~~~Gf~~~~~~~~~~W~~l~~~k  254 (254)
T 2nxc_A          229 EAMAGAGFRPLEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             HHHHHTTCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHCCCEEEEEeccCCeEEEEEEC
Confidence            99999999999888877776665543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.65  E-value=8e-16  Score=131.73  Aligned_cols=110  Identities=16%  Similarity=0.109  Sum_probs=93.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~  253 (362)
                      .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|+++++..   ...++.++++|+..++  +++++||+|+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~~~~~~~~fD~i~  118 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEAL---GLSGATLRRGAVAAVVAAGTTSPVDLVL  118 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHH---TCSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHc---CCCceEEEEccHHHHHhhccCCCccEEE
Confidence            467899999999999999877765 358999999999999999998876   1268999999997764  3468899999


Q ss_pred             ecccccCC-CCHHHHHHHHHh--hccCCcEEEEEEEccC
Q 018003          254 AGAAIHCW-SSPSTGVAEISR--VLRPGGVFVGTTYIVD  289 (362)
Q Consensus       254 ~~~vl~h~-~d~~~~l~~i~r--~LkpgG~li~~~~~~~  289 (362)
                      ++..+++. .+...+++++.+  +|||||++++.++...
T Consensus       119 ~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          119 ADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             ECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             ECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            99887775 577899999999  9999999999887654

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.65  E-value=4.3e-15  Score=133.27  Aligned_cols=142  Identities=18%  Similarity=0.166  Sum_probs=115.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++...  +..++.+..+|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~--g~~~v~~~~~d~~~  159 (258)
T 2pwy_A           82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFW--QVENVRFHLGKLEE  159 (258)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC--CCCCEEEEESCGGG
T ss_pred             chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc--CCCCEEEEECchhh
Confidence            344466777777778999999999999999999988 666799999999999999999876530  14689999999988


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      .++++++||+|++     +++++..+++++.++|||||++++.++...                              ..
T Consensus       160 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~  204 (258)
T 2pwy_A          160 AELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT------------------------------QV  204 (258)
T ss_dssp             CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH------------------------------HH
T ss_pred             cCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH------------------------------HH
Confidence            8777889999997     467888999999999999999999875421                              11


Q ss_pred             HHHHHHHHHCCCEEEEEEEe
Q 018003          322 DDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      ..+.+.+++.||..++....
T Consensus       205 ~~~~~~l~~~gf~~~~~~~~  224 (258)
T 2pwy_A          205 LELVRAAEAHPFRLERVLEV  224 (258)
T ss_dssp             HHHHHHHTTTTEEEEEEEEE
T ss_pred             HHHHHHHHHCCCceEEEEEe
Confidence            35666778899987766543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.65  E-value=5.8e-16  Score=130.49  Aligned_cols=162  Identities=9%  Similarity=0.009  Sum_probs=118.7

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .+.....+..++..  ..+|||+|||+|.++..++...+..+|+++|+|+.|++.++++++..  +...++.+  +|...
T Consensus        36 ld~fY~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~--g~~~~v~~--~d~~~  109 (200)
T 3fzg_A           36 LNDFYTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL--KTTIKYRF--LNKES  109 (200)
T ss_dssp             HHHHHHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS--CCSSEEEE--ECCHH
T ss_pred             HHHHHHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc--CCCccEEE--ecccc
Confidence            34445666777754  77999999999999999999888889999999999999999999876  11224555  66644


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                      . .+.++||+|++..+|||+++....+..+.+.|||||+++ +-|...-.       +          ...  .+.-.-.
T Consensus       110 ~-~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfI-Sfptksl~-------G----------r~~--gm~~~Y~  168 (200)
T 3fzg_A          110 D-VYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVI-SFPIKSLS-------G----------KEK--GMEENYQ  168 (200)
T ss_dssp             H-HTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEE-EEECCCCC-------------------CT--TCCCCHH
T ss_pred             c-CCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEE-EeChHHhc-------C----------CCc--chhhhHH
Confidence            3 356889999999999999777788889999999998776 44422100       0          000  1122234


Q ss_pred             HHHHHHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003          322 DDLKRIFRQFQLVVNLKLFYGHIQHYIVKI  351 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~k  351 (362)
                      ..|+..+ ...+.+++...+|.--.|+.+|
T Consensus       169 ~~~~~~~-~~~~~~~~~~~~~nEl~y~~~~  197 (200)
T 3fzg_A          169 LWFESFT-KGWIKILDSKVIGNELVYITSG  197 (200)
T ss_dssp             HHHHHHT-TTTSCEEEEEEETTEEEEEECC
T ss_pred             HHHHHhc-cCcceeeeeeeeCceEEEEEec
Confidence            4666666 6677788888888887777765

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.65  E-value=1.8e-15  Score=131.52  Aligned_cols=114  Identities=18%  Similarity=0.096  Sum_probs=98.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ......+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|++++...   ...++.++.+|+...
T Consensus        63 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~--~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~  137 (210)
T 3lbf_A           63 PYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLV--QHVCSVERIKGLQWQARRRLKNL---DLHNVSTRHGDGWQG  137 (210)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHc---CCCceEEEECCcccC
Confidence            3445667777777889999999999999999999985  49999999999999999998875   235799999999886


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +...++||+|++..+++|+++      ++.++|||||++++..+.
T Consensus       138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            666789999999999999976      578999999999998876

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.64  E-value=1.4e-15  Score=136.54  Aligned_cols=111  Identities=14%  Similarity=0.144  Sum_probs=90.6

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ..+.+...+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|++++...         .+..++..++.
T Consensus        33 ~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~---------~v~~~~~~~~~  101 (261)
T 3iv6_A           33 DRENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADR---------CVTIDLLDITA  101 (261)
T ss_dssp             HHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSS---------CCEEEECCTTS
T ss_pred             HHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhc---------cceeeeeeccc
Confidence            346677777778899999999999999999999876  9999999999999999985432         23444444332


Q ss_pred             -----CCCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 -----ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 -----~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                           .+++||+|++..+++|+..  ...+++++.++| |||+++++...
T Consensus       102 ~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          102 EIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             CCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             ccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEecc
Confidence                 2578999999999999864  457999999999 99999998765

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.64  E-value=1.5e-15  Score=137.96  Aligned_cols=136  Identities=18%  Similarity=0.111  Sum_probs=106.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|+++++...  +..++.++.+|+.. +++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--g~~~v~~~~~d~~~-~~~  176 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFY--DIGNVRTSRSDIAD-FIS  176 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTS--CCTTEEEECSCTTT-CCC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcC--CCCcEEEEECchhc-cCc
Confidence            45666677778899999999999999999987 556799999999999999999876530  13689999999987 566


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|++     |++++..+++++.++|||||++++.++...                              ..+.+.
T Consensus       177 ~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~------------------------------~~~~~~  221 (275)
T 1yb2_A          177 DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD------------------------------QSEKTV  221 (275)
T ss_dssp             SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH------------------------------HHHHHH
T ss_pred             CCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH------------------------------HHHHHH
Confidence            788999998     678999999999999999999999875421                              123566


Q ss_pred             HHHHHCCCEEEEEEE
Q 018003          326 RIFRQFQLVVNLKLF  340 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~  340 (362)
                      +.+++.||..++...
T Consensus       222 ~~l~~~Gf~~~~~~~  236 (275)
T 1yb2_A          222 LSLSASGMHHLETVE  236 (275)
T ss_dssp             HHSGGGTEEEEEEEE
T ss_pred             HHHHHCCCeEEEEEE
Confidence            777788997766554

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.63  E-value=3.4e-15  Score=133.90  Aligned_cols=117  Identities=25%  Similarity=0.326  Sum_probs=99.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..  +...++.++.+|+.+
T Consensus        79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA--GFDDRVTIKLKDIYE  156 (255)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH--TCTTTEEEECSCGGG
T ss_pred             HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc--CCCCceEEEECchhh
Confidence            444567778888888999999999999999999998 76779999999999999999998776  123449999999975


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      . +++++||+|++     +.+++..+++++.++|||||++++..+.
T Consensus       157 ~-~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  196 (255)
T 3mb5_A          157 G-IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPC  196 (255)
T ss_dssp             C-CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred             c-cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence            4 66788999997     4678889999999999999999988754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=1.9e-14  Score=121.79  Aligned_cols=134  Identities=15%  Similarity=0.196  Sum_probs=109.9

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ......+.+.+.+...++.+|||+|||+|.++..+++  +..+++|+|+++.+++.+++++...   ...++.++++|+.
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~~~~d~~   93 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKF---NIKNCQIIKGRAE   93 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHT---TCCSEEEEESCHH
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHc---CCCcEEEEECCcc
Confidence            3455566777777777788999999999999999988  3459999999999999999998775   1357999999997


Q ss_pred             CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCC
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG  320 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  320 (362)
                      . ++++++||+|++..+    .++..+++++.++  |||.+++.++..+                              +
T Consensus        94 ~-~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~------------------------------~  136 (183)
T 2yxd_A           94 D-VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE------------------------------N  136 (183)
T ss_dssp             H-HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH------------------------------H
T ss_pred             c-cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc------------------------------c
Confidence            7 666789999999988    6788999999999  9999999875421                              1


Q ss_pred             HHHHHHHHHHCCCEEE
Q 018003          321 FDDLKRIFRQFQLVVN  336 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v  336 (362)
                      ...+.+.++++||...
T Consensus       137 ~~~~~~~l~~~g~~~~  152 (183)
T 2yxd_A          137 AAKIINEFESRGYNVD  152 (183)
T ss_dssp             HHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHcCCeEE
Confidence            2457889999998554

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.63  E-value=1.6e-15  Score=129.21  Aligned_cols=107  Identities=20%  Similarity=0.174  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcceEEEe
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHA  254 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~V~~  254 (362)
                      .++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|+++++..   ...++.+++++...++ +.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~~---~~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSDL---GIENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHH---TCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            358899999999999999999884  49999999999999999998876   1268999998887653 44678999998


Q ss_pred             c-ccccC--------CCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          255 G-AAIHC--------WSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       255 ~-~vl~h--------~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      + ..+++        ..+...+++++.++|||||++++..+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           96 NLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             eCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            7 33332        123457899999999999999998764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.62  E-value=6.2e-15  Score=125.63  Aligned_cols=119  Identities=19%  Similarity=0.212  Sum_probs=97.9

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ........+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.+++++...  +...++.+..+|+.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~   92 (192)
T 1l3i_A           17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH--GLGDNVTLMEGDAP   92 (192)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT--TCCTTEEEEESCHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHc--CCCcceEEEecCHH
Confidence            344555667777777788999999999999999999887  59999999999999999988765  12258999999986


Q ss_pred             CCCCCC-CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          241 RLPFAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       241 ~~p~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      . +++. ++||+|++..+++   +...+++++.++|+|||.+++.++.
T Consensus        93 ~-~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~  136 (192)
T 1l3i_A           93 E-ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL  136 (192)
T ss_dssp             H-HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             H-hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecC
Confidence            6 3333 5899999998876   4688999999999999999988753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.62  E-value=1.6e-15  Score=143.89  Aligned_cols=116  Identities=19%  Similarity=0.248  Sum_probs=97.8

Q ss_pred             HHHHHhhcC--CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          166 FELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       166 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .+.+...+.  ..++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|++++...    ..++.++++|+...+
T Consensus       220 l~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~----~~~v~~~~~D~~~~~  293 (381)
T 3dmg_A          220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEAN----ALKAQALHSDVDEAL  293 (381)
T ss_dssp             HHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTTS
T ss_pred             HHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc----CCCeEEEEcchhhcc
Confidence            344444442  33578999999999999999999865  9999999999999999998876    345899999999887


Q ss_pred             CCCCcceEEEecccccC-----CCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 FASSSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h-----~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .++++||+|+++..+++     ..+...+++++.++|||||.++++...
T Consensus       294 ~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             CTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             ccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            76789999999999888     445678999999999999999998654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.62  E-value=3e-15  Score=130.84  Aligned_cols=107  Identities=17%  Similarity=0.129  Sum_probs=89.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~  254 (362)
                      ++.+|||||||+|.++..+++..++.+++|+|+|+.+++.|++++...   ...++.++++|+..++  +++++||.|++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~---~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS---EAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS---CCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc---CCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            467999999999999999999877789999999999999999988765   2468999999998876  67889999987


Q ss_pred             cccccCCCC--------HHHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~d--------~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .....+...        ...+++++.++|||||.+++.+.
T Consensus       115 ~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td  154 (213)
T 2fca_A          115 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD  154 (213)
T ss_dssp             ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES
T ss_pred             ECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC
Confidence            654332221        25789999999999999999874

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.61  E-value=1.3e-15  Score=133.72  Aligned_cols=108  Identities=15%  Similarity=0.091  Sum_probs=90.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C--CCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P--FASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p--~~~~~fD~V~  253 (362)
                      ++.+|||||||+|.++..+++..+...|+|+|+|+.+++.|++++...   ...++.++++|+..+ +  +++++||.|+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~---~l~nv~~~~~Da~~~l~~~~~~~~~d~v~  110 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE---GLSNLRVMCHDAVEVLHKMIPDNSLRMVQ  110 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT---TCSSEEEECSCHHHHHHHHSCTTCEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh---CCCcEEEEECCHHHHHHHHcCCCChheEE
Confidence            467999999999999999999988889999999999999999988765   246899999998774 3  6789999999


Q ss_pred             ecccccCCCCH--------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~~d~--------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +++...+....        ..+++++.++|||||.+++.+..
T Consensus       111 ~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          111 LFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             EESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            88554332221        25899999999999999998843

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.61  E-value=1.6e-14  Score=131.35  Aligned_cols=138  Identities=17%  Similarity=0.163  Sum_probs=108.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+.+.+.  ++.+|||+|||+|.++..+++.+.. +|+|+|+|+.+++.|+++++.+  +...++.++++|+.+++. 
T Consensus       116 ~~~l~~~~~--~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n--~~~~~v~~~~~D~~~~~~-  189 (278)
T 2frn_A          116 RVRMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFPG-  189 (278)
T ss_dssp             HHHHHHHCC--TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCCC-
T ss_pred             HHHHHHhCC--CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHc--CCCceEEEEECCHHHhcc-
Confidence            344555544  4789999999999999999998863 7999999999999999998865  223459999999998875 


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|++...    .+...+++++.++|||||++++.+.....                        ...--..+.+.
T Consensus       190 ~~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------------------------~~~~~~~~~i~  241 (278)
T 2frn_A          190 ENIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK------------------------LMPREPFETFK  241 (278)
T ss_dssp             CSCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG------------------------GTTTTTHHHHH
T ss_pred             cCCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccc------------------------cccccHHHHHH
Confidence            778999998543    45568899999999999999998775321                        11123456788


Q ss_pred             HHHHHCCCEEEE
Q 018003          326 RIFRQFQLVVNL  337 (362)
Q Consensus       326 ~ll~~~Gf~~v~  337 (362)
                      +.++++||....
T Consensus       242 ~~~~~~G~~~~~  253 (278)
T 2frn_A          242 RITKEYGYDVEK  253 (278)
T ss_dssp             HHHHHTTCEEEE
T ss_pred             HHHHHcCCeeEE
Confidence            999999997654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.61  E-value=7.4e-15  Score=130.01  Aligned_cols=142  Identities=16%  Similarity=0.158  Sum_probs=102.5

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---CCCCCC
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS  247 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~p~~~~  247 (362)
                      .+...++.+|||+|||+|.++..+++. ++..+|+|+|+|+.+++.+.+..+..     .++.++.+|+..   +++.++
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~-----~~v~~~~~d~~~~~~~~~~~~  146 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR-----TNIIPVIEDARHPHKYRMLIA  146 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC-----TTEEEECSCTTCGGGGGGGCC
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc-----CCeEEEEcccCChhhhcccCC
Confidence            344567889999999999999999987 45569999999999888777766553     689999999987   455578


Q ss_pred             cceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          248 SIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      +||+|++...   .++. ..++.++.++|||||++++........ .                .. . ....+.. + .+
T Consensus       147 ~~D~V~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~-~----------------~~-~-~~~~~~~-~-~~  202 (233)
T 2ipx_A          147 MVDVIFADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCID-S----------------TA-S-AEAVFAS-E-VK  202 (233)
T ss_dssp             CEEEEEECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC-S----------------SS-C-HHHHHHH-H-HH
T ss_pred             cEEEEEEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccc-c----------------CC-C-HHHHHHH-H-HH
Confidence            8999998554   2233 456889999999999999965431000 0                00 0 0111222 2 48


Q ss_pred             HHHHCCCEEEEEEEec
Q 018003          327 IFRQFQLVVNLKLFYG  342 (362)
Q Consensus       327 ll~~~Gf~~v~~~~~g  342 (362)
                      +|+++||++++.....
T Consensus       203 ~l~~~Gf~~~~~~~~~  218 (233)
T 2ipx_A          203 KMQQENMKPQEQLTLE  218 (233)
T ss_dssp             TTGGGTEEEEEEEECT
T ss_pred             HHHHCCCceEEEEecC
Confidence            8899999988865543

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.61  E-value=4.1e-15  Score=133.12  Aligned_cols=131  Identities=11%  Similarity=-0.041  Sum_probs=104.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC---CCcceEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA---SSSIDAV  252 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~---~~~fD~V  252 (362)
                      .++.+|||||||+|..+..++...+..+|+++|+|+.+++.|+++++..   +..++.++++|+++++..   .++||+|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~l~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVL---GLKGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh---CCCceEEEECcHHHhhcccccCCCceEE
Confidence            4678999999999999999998877789999999999999999998876   234699999999877643   4789999


Q ss_pred             EecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003          253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      ++..+    .+...+++.+.++|||||++++......        .                    -....+.+.++..|
T Consensus       156 ~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~--------~--------------------~e~~~~~~~l~~~G  203 (249)
T 3g89_A          156 VARAV----APLCVLSELLLPFLEVGGAAVAMKGPRV--------E--------------------EELAPLPPALERLG  203 (249)
T ss_dssp             EEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCC--------H--------------------HHHTTHHHHHHHHT
T ss_pred             EECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCc--------H--------------------HHHHHHHHHHHHcC
Confidence            99654    5778999999999999999987652210        0                    01124677888899


Q ss_pred             CEEEEEEEe
Q 018003          333 LVVNLKLFY  341 (362)
Q Consensus       333 f~~v~~~~~  341 (362)
                      |...+...+
T Consensus       204 ~~~~~~~~~  212 (249)
T 3g89_A          204 GRLGEVLAL  212 (249)
T ss_dssp             EEEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            988776654

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.61  E-value=3.7e-16  Score=135.89  Aligned_cols=140  Identities=19%  Similarity=0.044  Sum_probs=90.0

Q ss_pred             HHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          166 FELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      .+.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+++.+++.|++++...    ..++.++++|+.. ++
T Consensus        18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~d~~~-~~   92 (215)
T 4dzr_A           18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF----GAVVDWAAADGIE-WL   92 (215)
T ss_dssp             HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------CCHHHHHH-HH
T ss_pred             HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh----CCceEEEEcchHh-hh
Confidence            4556666654 5688999999999999999999977779999999999999999987665    2278888899876 55


Q ss_pred             CC-----CcceEEEecccccC------CCCH--------------------HHHHHHHHhhccCCcEEEEEEEccCCCCc
Q 018003          245 AS-----SSIDAVHAGAAIHC------WSSP--------------------STGVAEISRVLRPGGVFVGTTYIVDGPFN  293 (362)
Q Consensus       245 ~~-----~~fD~V~~~~vl~h------~~d~--------------------~~~l~~i~r~LkpgG~li~~~~~~~~~~~  293 (362)
                      ++     ++||+|+++..+++      +...                    ..+++++.++|||||++++....      
T Consensus        93 ~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------  166 (215)
T 4dzr_A           93 IERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG------  166 (215)
T ss_dssp             HHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT------
T ss_pred             hhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC------
Confidence            55     89999999644433      2211                    67889999999999994444321      


Q ss_pred             chhhhHHHHHhhhhcccccccccccCCHHHHHHHHH--HCCCEEEEEEE
Q 018003          294 LIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR--QFQLVVNLKLF  340 (362)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~--~~Gf~~v~~~~  340 (362)
                                              ....+.+.++++  +.||..++...
T Consensus       167 ------------------------~~~~~~~~~~l~~~~~gf~~~~~~~  191 (215)
T 4dzr_A          167 ------------------------HNQADEVARLFAPWRERGFRVRKVK  191 (215)
T ss_dssp             ------------------------TSCHHHHHHHTGGGGGGTEECCEEE
T ss_pred             ------------------------CccHHHHHHHHHHhhcCCceEEEEE
Confidence                                    123456788888  89997765543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.61  E-value=8.2e-15  Score=131.93  Aligned_cols=140  Identities=15%  Similarity=0.223  Sum_probs=107.5

Q ss_pred             HHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          167 ELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       167 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      ..+..++... ++.+|||+|||+|.++..+++.++ .+++|+|+++.+++.|++++...  ....++.++++|+..++  
T Consensus        38 ~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~--~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           38 VLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYN--QLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHT--TCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHC--CCcccEEEEECcHHHhhhh
Confidence            3455666666 789999999999999999999865 39999999999999999998875  22357999999998875  


Q ss_pred             CCCCcceEEEecccccCC-----C---------------CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHH
Q 018003          244 FASSSIDAVHAGAAIHCW-----S---------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ  303 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~-----~---------------d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~  303 (362)
                      ++.++||+|+++..+.+.     .               +...+++++.++|||||++++..+.                
T Consensus       115 ~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~----------------  178 (259)
T 3lpm_A          115 IPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP----------------  178 (259)
T ss_dssp             SCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT----------------
T ss_pred             hccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH----------------
Confidence            457899999997554322     1               2357899999999999999985432                


Q ss_pred             hhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003          304 VCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       304 ~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                                     ....++..++++.||...+...
T Consensus       179 ---------------~~~~~~~~~l~~~~~~~~~~~~  200 (259)
T 3lpm_A          179 ---------------ERLLDIIDIMRKYRLEPKRIQF  200 (259)
T ss_dssp             ---------------TTHHHHHHHHHHTTEEEEEEEE
T ss_pred             ---------------HHHHHHHHHHHHCCCceEEEEE
Confidence                           1234577788888997765443

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.60  E-value=1.4e-15  Score=142.27  Aligned_cols=121  Identities=19%  Similarity=0.248  Sum_probs=94.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcC-----CC---CCCCEE
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES-----NF---PKENFL  233 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~---~~~~~~  233 (362)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.|++++....     +.   ...++.
T Consensus        91 ~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            334566677777778999999999999999999987 666799999999999999999887520     00   135899


Q ss_pred             EEEecCCCC--CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          234 LVRADISRL--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       234 ~~~~d~~~~--p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++.+|+.+.  ++++++||+|++.     .+++..+++++.++|||||++++..+..
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             EEESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             EEECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            999999876  4567789999984     3566668999999999999999887654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.60  E-value=2.6e-15  Score=141.11  Aligned_cols=123  Identities=11%  Similarity=0.055  Sum_probs=99.4

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHh-------hcCCCCCCCEEEEE
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKENFLLVR  236 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~-------~~~~~~~~~~~~~~  236 (362)
                      ..+..+++.+...++.+|||||||+|.++..++......+++|+|+++.+++.|++.++       .. +....++.+++
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~-Gl~~~rVefi~  238 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY-GKKHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHH-TBCCCEEEEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh-CCCCCCeEEEE
Confidence            34567777788888999999999999999999876544469999999999999987542       22 11136899999


Q ss_pred             ecCCCCCCCC--CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          237 ADISRLPFAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       237 ~d~~~~p~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +|+..+|+.+  ..||+|+++..+ +.+++...|+++.++|||||+|++.....
T Consensus       239 GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~  291 (438)
T 3uwp_A          239 GDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFA  291 (438)
T ss_dssp             CCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSS
T ss_pred             CcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeeccc
Confidence            9999988754  479999998775 45788899999999999999999886654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.60  E-value=1.6e-14  Score=131.30  Aligned_cols=117  Identities=23%  Similarity=0.247  Sum_probs=98.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++..  +...++.++.+|+..
T Consensus        98 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~  175 (277)
T 1o54_A           98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIERVTIKVRDISE  175 (277)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT--TCGGGEEEECCCGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc--CCCCCEEEEECCHHH
Confidence            344467777778788999999999999999999988 66779999999999999999988765  112579999999976


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      . +++++||+|++     +.+++..+++++.++|+|||++++.++.
T Consensus       176 ~-~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~  215 (277)
T 1o54_A          176 G-FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPT  215 (277)
T ss_dssp             C-CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             c-ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5 56678999997     4578889999999999999999998753

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.60  E-value=1.1e-14  Score=128.57  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.+++++...    . ++.++.+|+....
T Consensus        57 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~----~-~v~~~~~d~~~~~  129 (231)
T 1vbf_A           57 NLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYY----N-NIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTC----S-SEEEEESCGGGCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhc----C-CeEEEECCccccc
Confidence            445667777777788999999999999999999987  49999999999999999988765    2 8999999997633


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ..+++||+|++..+++|+.      .++.++|||||++++.++..
T Consensus       130 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          130 EEEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            3467899999999999986      36899999999999998654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.59  E-value=5e-15  Score=131.40  Aligned_cols=112  Identities=18%  Similarity=0.175  Sum_probs=87.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc---CCCCCCCEEEEEecCCC-CC--CCCCcc
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---SNFPKENFLLVRADISR-LP--FASSSI  249 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~~~~~~~~~d~~~-~p--~~~~~f  249 (362)
                      .++.+|||||||+|.++..+++..++..++|+|+|+.|++.|++++...   ......++.++++|+.. ++  +++++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            3466899999999999999999887789999999999999999876531   00124689999999987 66  778999


Q ss_pred             eEEEecccccCCCC--------HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          250 DAVHAGAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       250 D~V~~~~vl~h~~d--------~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |.|++...-.+...        ...+++++.++|||||.|++.+..
T Consensus       125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            99987543222110        136899999999999999998754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.59  E-value=1e-14  Score=136.51  Aligned_cols=112  Identities=19%  Similarity=0.303  Sum_probs=94.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|+++++..  +...++.++.+|+.++++++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~  129 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLN--KLEDTITLIKGKIEEVHLPV  129 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHT--TCTTTEEEEESCTTTSCCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHc--CCCCcEEEEEeeHHHhcCCC
Confidence            445555555668899999999999999999885 35899999997 999999988765  22368999999999998888


Q ss_pred             CcceEEEecc---cccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          247 SSIDAVHAGA---AIHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       247 ~~fD~V~~~~---vl~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      ++||+|++..   .+.|..++..+++++.++|||||+++
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            8999999876   56676778899999999999999998

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.59  E-value=1.1e-13  Score=121.84  Aligned_cols=146  Identities=10%  Similarity=0.004  Sum_probs=100.9

Q ss_pred             HHHHhhc---CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          167 ELMKGYL---KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       167 ~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ..+...+   ...++.+|||+|||+|.++..+++. ++.+.|+|+|+++.|++...+..+.     ..++.++++|+...
T Consensus        63 ~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----r~nv~~i~~Da~~~  137 (232)
T 3id6_C           63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----RPNIFPLLADARFP  137 (232)
T ss_dssp             HHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----CTTEEEEECCTTCG
T ss_pred             HHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----cCCeEEEEcccccc
Confidence            4455444   3678999999999999999999876 5567999999999987655444333     26899999999764


Q ss_pred             CC---CCCcceEEEecccccCCCCHHHHH-HHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccccc
Q 018003          243 PF---ASSSIDAVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPV  318 (362)
Q Consensus       243 p~---~~~~fD~V~~~~vl~h~~d~~~~l-~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (362)
                      ..   ..++||+|++....   ++....+ ..+.++|||||+|+++.....-.    .             ...+  ...
T Consensus       138 ~~~~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d----~-------------t~~~--~e~  195 (232)
T 3id6_C          138 QSYKSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSID----V-------------TKDP--KEI  195 (232)
T ss_dssp             GGTTTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC------------------------CCS--SSS
T ss_pred             hhhhccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcc----c-------------CCCH--HHH
Confidence            31   24689999988653   5555544 55666999999999985322100    0             0001  111


Q ss_pred             CCHHHHHHHHHHCCCEEEEEEEe
Q 018003          319 LGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       319 ~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      +  +...+.|+++||++++....
T Consensus       196 ~--~~~~~~L~~~gf~~~~~~~l  216 (232)
T 3id6_C          196 Y--KTEVEKLENSNFETIQIINL  216 (232)
T ss_dssp             T--THHHHHHHHTTEEEEEEEEC
T ss_pred             H--HHHHHHHHHCCCEEEEEecc
Confidence            1  34556788999999988876

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.58  E-value=2.7e-15  Score=129.87  Aligned_cols=119  Identities=15%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             HHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-
Q 018003          167 ELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-  244 (362)
Q Consensus       167 ~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-  244 (362)
                      +.+.+.+... ++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++.. +....++.++++|+..+.. 
T Consensus        42 ~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~-~~~~~~v~~~~~d~~~~~~~  119 (201)
T 2ift_A           42 ETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSLDFLKQ  119 (201)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHHHHTTS
T ss_pred             HHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHh-CCCccceEEEECCHHHHHHh
Confidence            3444443321 467999999999999998777753 58999999999999999998776 1101589999999876432 


Q ss_pred             -CCCc-ceEEEecccccCCCCHHHHHHHH--HhhccCCcEEEEEEEcc
Q 018003          245 -ASSS-IDAVHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 -~~~~-fD~V~~~~vl~h~~d~~~~l~~i--~r~LkpgG~li~~~~~~  288 (362)
                       .+++ ||+|++...++ ..+...+++++  .++|||||.+++.+...
T Consensus       120 ~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          120 PQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             hccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             3578 99999988744 56778889999  67899999999987653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.58  E-value=9e-15  Score=131.11  Aligned_cols=152  Identities=11%  Similarity=-0.035  Sum_probs=99.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CCC---CCcce
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFA---SSSID  250 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~~---~~~fD  250 (362)
                      ++.+|||+|||+|.++..++...+..+++|+|+|+.|++.|++++...  +...++.++++|+...   +++   +++||
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEIIYD  142 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc--CCCccEEEEEcchhhhhhhhhhcccCCccc
Confidence            467999999999999988887754569999999999999999998765  2234599999997652   444   26899


Q ss_pred             EEEecccccCCC---------------CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccc
Q 018003          251 AVHAGAAIHCWS---------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFS  315 (362)
Q Consensus       251 ~V~~~~vl~h~~---------------d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (362)
                      +|+++...++..               ....++.++.++|||||.+.+...          .+..........-.....+
T Consensus       143 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~----------~~~~~~~~l~~~g~~~~~~  212 (254)
T 2h00_A          143 FCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR----------IIHDSLQLKKRLRWYSCML  212 (254)
T ss_dssp             EEEECCCCC-------------------------CTTTTHHHHTHHHHHHH----------HHHHHHHHGGGBSCEEEEE
T ss_pred             EEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHH----------HHHHHHhcccceEEEEECC
Confidence            999985554432               112457889999999998875432          1111111111000111112


Q ss_pred             cccCCHHHHHHHHHHCCCEEEEEEE
Q 018003          316 IPVLGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       316 ~~~~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      ....+.+.+.++++++||+.++...
T Consensus       213 ~~~~~~~~~~~~l~~~Gf~~v~~~~  237 (254)
T 2h00_A          213 GKKCSLAPLKEELRIQGVPKVTYTE  237 (254)
T ss_dssp             SSTTSHHHHHHHHHHTTCSEEEEEE
T ss_pred             CChhHHHHHHHHHHHcCCCceEEEE
Confidence            2334457899999999997765443

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.58  E-value=1.5e-14  Score=134.10  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=97.3

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      .....+.+.+...++.+|||+|||+|.++..+++.+. ..+|+|+|+|+.+++.|+++++..   +..++.++.+|+...
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~---g~~~v~~~~~d~~~~  138 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---GIENVIFVCGDGYYG  138 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGC
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---CCCCeEEEECChhhc
Confidence            3456777777778899999999999999999998866 367999999999999999998765   235699999999875


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +..+++||+|++..+++|++      +++.++|||||++++....
T Consensus       139 ~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          139 VPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             CGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             cccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence            54567899999999999986      5788999999999997543

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.58  E-value=5.4e-15  Score=127.25  Aligned_cols=112  Identities=15%  Similarity=0.238  Sum_probs=91.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcceEE
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAV  252 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~V  252 (362)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.|+++++..  +...++.++++|+..++ +.+++||+|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL--NLIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT--TCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCCeEEEECCHHHHhhhccCCceEE
Confidence            345789999999999999999887 34569999999999999999998775  11258999999998775 556889999


Q ss_pred             Eecccc---------cCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          253 HAGAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       253 ~~~~vl---------~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++...+         .+..++..+++++.++|||||++++..+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A           98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             EEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            988754         111134579999999999999999987653

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.58  E-value=1.9e-14  Score=125.46  Aligned_cols=115  Identities=16%  Similarity=0.127  Sum_probs=94.9

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ....+.+.+...++.+|||+|||+|.++..+++.+ +..+++++|+++.+++.+++++...   ...++.+..+|+....
T Consensus        65 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~  141 (215)
T 2yxe_A           65 MVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL---GYDNVIVIVGDGTLGY  141 (215)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---TCTTEEEEESCGGGCC
T ss_pred             HHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEECCcccCC
Confidence            34566667777788999999999999999998875 4469999999999999999988765   1356999999985432


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ...++||+|++..+++|++      +++.++|||||++++..+..
T Consensus       142 ~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          142 EPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             CCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            2367899999999999986      48899999999999987653

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.57  E-value=1.1e-14  Score=134.06  Aligned_cols=139  Identities=12%  Similarity=0.118  Sum_probs=102.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc-CCCCCCCEEEEEecCCCCCC--CCCcceEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRLPF--ASSSIDAV  252 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~p~--~~~~fD~V  252 (362)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... .+....++.++.+|+...+.  .+++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            3568999999999999999998755679999999999999999986320 01124689999999877653  36789999


Q ss_pred             EecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHH
Q 018003          253 HAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIF  328 (362)
Q Consensus       253 ~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll  328 (362)
                      ++....++.++.    ..+++++.++|||||++++...+.        +.                  .......+.+.+
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------~~------------------~~~~~~~~~~~l  227 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------WL------------------DLELIEKMSRFI  227 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------TT------------------CHHHHHHHHHHH
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------cc------------------chHHHHHHHHHH
Confidence            997665554333    588999999999999999875431        00                  011245788899


Q ss_pred             HHCCCEEEEEEE
Q 018003          329 RQFQLVVNLKLF  340 (362)
Q Consensus       329 ~~~Gf~~v~~~~  340 (362)
                      +++||..++...
T Consensus       228 ~~~GF~~v~~~~  239 (304)
T 3bwc_A          228 RETGFASVQYAL  239 (304)
T ss_dssp             HHHTCSEEEEEE
T ss_pred             HhCCCCcEEEEE
Confidence            999998777654

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.57  E-value=1.4e-14  Score=136.15  Aligned_cols=105  Identities=14%  Similarity=0.252  Sum_probs=90.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..  +...++.++++|++++++++++||+|++.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s~-~l~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~Iis~  140 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSS-ISDYAVKIVKAN--KLDHVVTIIKGKVEEVELPVEKVDIIISE  140 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHT--TCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcHH-HHHHHHHHHHHc--CCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence            457899999999999999999984 35999999994 999999988775  22456999999999999888999999997


Q ss_pred             cc---ccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          256 AA---IHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       256 ~v---l~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      .+   +.+..++..+++++.++|||||+++..
T Consensus       141 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          141 WMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             CCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            65   444578899999999999999999744

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.57  E-value=9.5e-14  Score=122.22  Aligned_cols=140  Identities=11%  Similarity=0.127  Sum_probs=102.4

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCc
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSS  248 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~  248 (362)
                      +...++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.++++++..     .++.++++|+....   ...++
T Consensus        69 ~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~~  143 (227)
T 1g8a_A           69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTCCC
T ss_pred             cCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc-----CCCEEEEccCCCcchhhcccCC
Confidence            33567889999999999999999987 55569999999999999999887653     68999999998732   12358


Q ss_pred             ceEEEecccccCCCCHH-HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003          249 IDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI  327 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~-~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l  327 (362)
                      ||+|++...   .++.. .+++++.++|||||.+++........  ..               .   ....+..+++.++
T Consensus       144 ~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~--~~---------------~---~~~~~~~~~l~~l  200 (227)
T 1g8a_A          144 VDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSID--VT---------------K---EPEQVFREVEREL  200 (227)
T ss_dssp             EEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC--TT---------------S---CHHHHHHHHHHHH
T ss_pred             ceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCC--CC---------------C---ChhhhhHHHHHHH
Confidence            999997654   23443 45999999999999999884322110  00               0   0112345677777


Q ss_pred             HHHCCCEEEEEEEec
Q 018003          328 FRQFQLVVNLKLFYG  342 (362)
Q Consensus       328 l~~~Gf~~v~~~~~g  342 (362)
                       +++ |+.++.....
T Consensus       201 -~~~-f~~~~~~~~~  213 (227)
T 1g8a_A          201 -SEY-FEVIERLNLE  213 (227)
T ss_dssp             -HTT-SEEEEEEECT
T ss_pred             -Hhh-ceeeeEeccC
Confidence             777 9998877654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.56  E-value=3.5e-15  Score=125.05  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhcCC--CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          163 EKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       163 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      +...+.+.+.+..  .++.+|||+|||+|.++..+++.++  .++|+|+|+.+++.|++++...    ..++.++++|+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~~~d~~   98 (171)
T 1ws6_A           25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT----GLGARVVALPVE   98 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH----TCCCEEECSCHH
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHc----CCceEEEeccHH
Confidence            3444445544432  1578999999999999999999887  6999999999999999998876    228899999987


Q ss_pred             CC-C-CC--CCcceEEEecccccCCCCHHHHHHHHH--hhccCCcEEEEEEEccCC
Q 018003          241 RL-P-FA--SSSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVDG  290 (362)
Q Consensus       241 ~~-p-~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpgG~li~~~~~~~~  290 (362)
                      +. + ..  .++||+|++...++  .+...+++.+.  ++|||||++++.++....
T Consensus        99 ~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A           99 VFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             HHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            63 2 11  24799999998765  56667777777  999999999999887643

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.56  E-value=8.5e-15  Score=137.31  Aligned_cols=120  Identities=17%  Similarity=0.220  Sum_probs=100.3

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++...    ...+.++.+|+...
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----~~~~~~~~~d~~~~  257 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----GVEGEVFASNVFSE  257 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----TCCCEEEECSTTTT
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----CCCCEEEEcccccc
Confidence            34456677777665678999999999999999999987779999999999999999998776    34567888998765


Q ss_pred             CCCCCcceEEEecccccC-----CCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          243 PFASSSIDAVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h-----~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +  +++||+|+++.++|+     ..+...+++++.++|||||.+++..+..
T Consensus       258 ~--~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          258 V--KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             C--CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             c--cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            4  678999999999885     3456789999999999999999987653

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.56  E-value=5.8e-15  Score=124.80  Aligned_cols=120  Identities=14%  Similarity=0.150  Sum_probs=93.6

Q ss_pred             HHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC
Q 018003          166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP  243 (362)
Q Consensus       166 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p  243 (362)
                      .+.+.+.+. ..++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|+++++..  +...++.++.+|+.+ ++
T Consensus        19 ~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~   95 (177)
T 2esr_A           19 RGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMT--KAENRFTLLKMEAERAID   95 (177)
T ss_dssp             HHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTT--TCGGGEEEECSCHHHHHH
T ss_pred             HHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECcHHHhHH
Confidence            345555555 4567899999999999999998874 359999999999999999988765  112479999999876 34


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHH--hhccCCcEEEEEEEccC
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~--r~LkpgG~li~~~~~~~  289 (362)
                      ..+++||+|++...+++ .+....++.+.  ++|||||++++.++...
T Consensus        96 ~~~~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           96 CLTGRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             HBCSCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             hhcCCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            44567999999876532 34566777777  99999999999987653

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.56  E-value=1.8e-14  Score=122.51  Aligned_cols=126  Identities=19%  Similarity=0.169  Sum_probs=98.5

Q ss_pred             CCcHHHHHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          160 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      +.++...+.+.+.+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|++++...  ....++.++++|
T Consensus        26 p~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d  102 (187)
T 2fhp_A           26 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAIT--KEPEKFEVRKMD  102 (187)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEESC
T ss_pred             cCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh--CCCcceEEEECc
Confidence            3345555666666643 467899999999999999888764 359999999999999999988775  112479999999


Q ss_pred             CCCCC----CCCCcceEEEecccccCCCCHHHHHHHH--HhhccCCcEEEEEEEccC
Q 018003          239 ISRLP----FASSSIDAVHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       239 ~~~~p----~~~~~fD~V~~~~vl~h~~d~~~~l~~i--~r~LkpgG~li~~~~~~~  289 (362)
                      +....    ..+++||+|++...++ ..+....++.+  .++|||||++++.++...
T Consensus       103 ~~~~~~~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          103 ANRALEQFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHHHHHHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            86632    2367899999988744 45677788888  899999999999887654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.56  E-value=2.4e-14  Score=124.10  Aligned_cols=101  Identities=19%  Similarity=0.187  Sum_probs=87.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.+++++...   ...++.++++|+...+ +.++||+|++..
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~v~~~~~d~~~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL---KLENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCeEEEecchhhCC-ccCCcCEEEEec
Confidence            377999999999999999998866679999999999999999988765   1345999999998876 457899999854


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                          +.++..+++++.++|+|||.+++..
T Consensus       141 ----~~~~~~~l~~~~~~L~~gG~l~~~~  165 (207)
T 1jsx_A          141 ----FASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             ----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ----cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence                3578899999999999999999864

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.56  E-value=3.8e-14  Score=134.21  Aligned_cols=124  Identities=15%  Similarity=0.125  Sum_probs=99.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+|+.+++.|++++....-....++.++.+|+.. 
T Consensus       208 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-  286 (375)
T 4dcm_A          208 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-  286 (375)
T ss_dssp             CHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-
T ss_pred             cHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-
Confidence            3444567888887777899999999999999999998778999999999999999999887610001358899999987 


Q ss_pred             CCCCCcceEEEecccccCCC---C--HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          243 PFASSSIDAVHAGAAIHCWS---S--PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~---d--~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++++++||+|+++..+++..   +  ...+++++.++|||||.+++....
T Consensus       287 ~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          287 GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             TCCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             cCCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            55678999999998887632   2  236899999999999999998754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.55  E-value=1.3e-14  Score=125.73  Aligned_cols=121  Identities=12%  Similarity=0.100  Sum_probs=94.8

Q ss_pred             HHHHHHHHhhcCCC-CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      +...+.+.+.+... ++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++..   ...++.++++|+..
T Consensus        39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~---~~~~v~~~~~D~~~  114 (202)
T 2fpo_A           39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL---KAGNARVVNSNAMS  114 (202)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEECCHHH
Confidence            34444455444332 578999999999999998777763 48999999999999999998876   12589999999876


Q ss_pred             -CCCCCCcceEEEecccccCCCCHHHHHHHHHh--hccCCcEEEEEEEcc
Q 018003          242 -LPFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIV  288 (362)
Q Consensus       242 -~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpgG~li~~~~~~  288 (362)
                       ++...++||+|++...+ |..+...+++++.+  +|||||++++.....
T Consensus       115 ~~~~~~~~fD~V~~~~p~-~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          115 FLAQKGTPHNIVFVDPPF-RRGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             HHSSCCCCEEEEEECCSS-STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             HHhhcCCCCCEEEECCCC-CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             45556789999998773 45677888999876  599999999887643

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.55  E-value=1.5e-15  Score=134.99  Aligned_cols=141  Identities=17%  Similarity=0.107  Sum_probs=109.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|++++...  +...++.++++|+..++ ++++||+|+++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~  152 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVY--GIADKIEFICGDFLLLA-SFLKADVVFLSP  152 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHG-GGCCCSEEEECC
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc--CCCcCeEEEECChHHhc-ccCCCCEEEECC
Confidence            57899999999999999999987  49999999999999999998776  11258999999998876 567999999999


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVN  336 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v  336 (362)
                      .++|..++...+.++.++|+|||.+++.....               ...   ..........+.+.+..++...|...+
T Consensus       153 ~~~~~~~~~~~~~~~~~~L~pgG~~i~~~~~~---------------~~~---~~~~~lp~~~~~~~~~~~l~~~g~~~i  214 (241)
T 3gdh_A          153 PWGGPDYATAETFDIRTMMSPDGFEIFRLSKK---------------ITN---NIVYFLPRNADIDQVASLAGPGGQVEI  214 (241)
T ss_dssp             CCSSGGGGGSSSBCTTTSCSSCHHHHHHHHHH---------------HCS---CEEEEEETTBCHHHHHHTTCTTCCEEE
T ss_pred             CcCCcchhhhHHHHHHhhcCCcceeHHHHHHh---------------hCC---ceEEECCCCCCHHHHHHHhccCCCEEE
Confidence            99998888778889999999999866432110               000   000002345677888888888887665


Q ss_pred             EEEE
Q 018003          337 LKLF  340 (362)
Q Consensus       337 ~~~~  340 (362)
                      ....
T Consensus       215 ~~~~  218 (241)
T 3gdh_A          215 EQNF  218 (241)
T ss_dssp             EEEE
T ss_pred             Eehh
Confidence            5444

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.55  E-value=4.4e-14  Score=130.82  Aligned_cols=118  Identities=19%  Similarity=0.167  Sum_probs=93.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+...+...++.+|||+|||+|..+..+++.. ...+|+|+|+++.+++.+++++++.   +..++.++++|+..++..
T Consensus       108 ~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~---g~~~v~~~~~D~~~~~~~  184 (315)
T 1ixk_A          108 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL---GVLNVILFHSSSLHIGEL  184 (315)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH---TCCSEEEESSCGGGGGGG
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh---CCCeEEEEECChhhcccc
Confidence            344556677789999999999999999999874 3469999999999999999998876   134799999999887655


Q ss_pred             CCcceEEEec------ccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +++||+|++.      .++.+.++.                ..+|+++.++|||||++++++-.
T Consensus       185 ~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs  248 (315)
T 1ixk_A          185 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  248 (315)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            6789999984      334443321                47899999999999999998753

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.55  E-value=2.9e-14  Score=135.24  Aligned_cols=115  Identities=16%  Similarity=0.212  Sum_probs=94.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+.......++.+|||+|||+|.++..+++.+. .+|+|+|+| .|++.|+++++..  +...++.++++|+++++++ 
T Consensus        53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~-  127 (376)
T 3r0q_C           53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKAN--NLDHIVEVIEGSVEDISLP-  127 (376)
T ss_dssp             HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHT--TCTTTEEEEESCGGGCCCS-
T ss_pred             HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHc--CCCCeEEEEECchhhcCcC-
Confidence            4454555556789999999999999999999863 599999999 9999999988775  2345699999999998876 


Q ss_pred             CcceEEEecccccCC---CCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          247 SSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~---~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ++||+|++..+.+++   .++..+++++.++|||||++++...
T Consensus       128 ~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~  170 (376)
T 3r0q_C          128 EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHA  170 (376)
T ss_dssp             SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEE
T ss_pred             CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            889999996654444   5688899999999999999987544

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.54  E-value=4.7e-14  Score=128.19  Aligned_cols=121  Identities=20%  Similarity=0.259  Sum_probs=100.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.|+++++...+....++.++.+|+..
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            344567777777778899999999999999999985 5567999999999999999998764200013589999999988


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .++++++||+|++     +++++..+++++.++|||||++++.++..
T Consensus       165 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          165 SELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             cCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            8877889999997     45788899999999999999999988753

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.54  E-value=9.3e-15  Score=128.33  Aligned_cols=116  Identities=9%  Similarity=0.118  Sum_probs=91.4

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCC
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFAS  246 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~  246 (362)
                      +...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.|+++++..  +...++.++++|+.+ ++...
T Consensus        50 l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~l~~~~  127 (221)
T 3u81_A           50 MDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA--GLQDKVTILNGASQDLIPQLK  127 (221)
T ss_dssp             HHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHGGGTT
T ss_pred             HHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc--CCCCceEEEECCHHHHHHHHH
Confidence            3333333456799999999999999999863 3579999999999999999998876  223469999999854 33222


Q ss_pred             -----CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          247 -----SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       247 -----~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                           ++||+|++....++..+...+++.+ ++|||||++++.+..
T Consensus       128 ~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~  172 (221)
T 3u81_A          128 KKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVI  172 (221)
T ss_dssp             TTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCC
T ss_pred             HhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCC
Confidence                 6899999998888876667788888 999999999986543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.54  E-value=8.9e-14  Score=126.67  Aligned_cols=121  Identities=15%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeC-CHHHHHHHHHHHhhcC---CCCC----CCEEEE
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQES---NFPK----ENFLLV  235 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~---~~~~----~~~~~~  235 (362)
                      ...+.+.......++.+|||+|||+|.++..+++.+. .+|+|+|+ ++.+++.|++++..+.   ++..    .++.+.
T Consensus        66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~-~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~  144 (281)
T 3bzb_A           66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGA-DQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVV  144 (281)
T ss_dssp             HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTC-SEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEE
T ss_pred             HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCC-CEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEE
Confidence            3345555555445678999999999999999888763 58999999 8999999999883210   0111    367777


Q ss_pred             EecCCCCC--C----CCCcceEEEecccccCCCCHHHHHHHHHhhcc---C--CcEEEEEE
Q 018003          236 RADISRLP--F----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLR---P--GGVFVGTT  285 (362)
Q Consensus       236 ~~d~~~~p--~----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lk---p--gG~li~~~  285 (362)
                      ..|..+..  +    .+++||+|++..+++|.++...+++++.++||   |  ||++++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          145 PYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             ECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             EecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence            66654321  1    35789999999999999999999999999999   9  99987753

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.54  E-value=4.7e-14  Score=125.92  Aligned_cols=105  Identities=19%  Similarity=0.263  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC--C---CCCCCEEEEEecCCC-CC--CCCCc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--N---FPKENFLLVRADISR-LP--FASSS  248 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~---~~~~~~~~~~~d~~~-~p--~~~~~  248 (362)
                      ++.+|||||||+|.++..+++.++...++|+|+|+.+++.+++++....  +   ....++.++++|+.. ++  ++.++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            4679999999999999999999887799999999999999998876420  0   013689999999986 56  66789


Q ss_pred             ceEEEecccccCCCCH-------------HHHHHHHHhhccCCcEEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~-------------~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +|.|+..     +++|             ..+++++.++|||||.|++.+.
T Consensus       129 ~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          129 LSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             EEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            9999853     3555             4899999999999999999764

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.53  E-value=5e-14  Score=131.21  Aligned_cols=105  Identities=20%  Similarity=0.288  Sum_probs=89.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ..++.+|||+|||+|.++..+++.+ ..+|+|+|++ .+++.|+++++..  +...++.++.+|+.++++++++||+|++
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~--~~~~~i~~~~~d~~~~~~~~~~~D~Ivs  111 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELN--GFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHT--TCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHc--CCCCCEEEEECchhhccCCCCcccEEEE
Confidence            3457899999999999999999875 3589999999 5999999988765  2345799999999999888789999998


Q ss_pred             cc---cccCCCCHHHHHHHHHhhccCCcEEEE
Q 018003          255 GA---AIHCWSSPSTGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       255 ~~---vl~h~~d~~~~l~~i~r~LkpgG~li~  283 (362)
                      ..   .+.+..++..++.++.++|||||+++.
T Consensus       112 ~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          112 EWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             CCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            74   455566788999999999999999984

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.53  E-value=4.6e-14  Score=125.03  Aligned_cols=114  Identities=14%  Similarity=0.139  Sum_probs=94.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+.+.+...++.+|||+|||+|.++..+++.++ .+|+++|+++.+++.|++++...   ...++.+..+|+ ..+
T Consensus        78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~---~~~~v~~~~~d~-~~~  152 (235)
T 1jg1_A           78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDG-SKG  152 (235)
T ss_dssp             HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCG-GGC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc---CCCCcEEEECCc-ccC
Confidence            3445666677777788999999999999999999864 59999999999999999988765   235699999997 334


Q ss_pred             CCCC-cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FASS-SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~-~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +++. .||+|++..++++++      +++.++|||||++++.++..
T Consensus       153 ~~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          153 FPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             CCCCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence            4443 599999999999885      37899999999999998764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=5.7e-14  Score=126.50  Aligned_cols=117  Identities=13%  Similarity=0.061  Sum_probs=93.9

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh---cCCCCCCCEEEEEecCCCC--
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ESNFPKENFLLVRADISRL--  242 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~~~~~~~~~~~~~~d~~~~--  242 (362)
                      .+..++...++.+|||+|||+|.++..++++.+..+++|+|+++.+++.|++++..   .  ....++.++++|+...  
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~--~l~~~v~~~~~D~~~~~~  104 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA--AFSARIEVLEADVTLRAK  104 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGT--TTGGGEEEEECCTTCCHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhC--CCcceEEEEeCCHHHHhh
Confidence            45566666678899999999999999999998777999999999999999998766   3  1123699999999887  


Q ss_pred             -----CCCCCcceEEEecccccC------------------CCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          243 -----PFASSSIDAVHAGAAIHC------------------WSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       243 -----p~~~~~fD~V~~~~vl~h------------------~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                           ++++++||+|+++-....                  ..+...+++++.++|||||++++..+
T Consensus       105 ~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          105 ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             HHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                 256789999999833221                  12467889999999999999998654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.53  E-value=2.7e-15  Score=132.76  Aligned_cols=156  Identities=15%  Similarity=0.118  Sum_probs=93.6

Q ss_pred             HHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCCC
Q 018003          167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLPF  244 (362)
Q Consensus       167 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p~  244 (362)
                      +.+++.+.. .++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.++++..+.......++.+.. .|+..   
T Consensus        26 ~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~---  101 (232)
T 3opn_A           26 EKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQ---  101 (232)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCS---
T ss_pred             HHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCc---
Confidence            344444443 3567999999999999999999863 49999999999999987742211000001111111 12221   


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh-cccccccccccCCHHH
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL-DLKIVGFSIPVLGFDD  323 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~  323 (362)
                        ..||.+.+..++.++   ..+++++.++|||||.+++.. .        +........... ...... +.+..+.++
T Consensus       102 --~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~-~--------p~~e~~~~~~~~~G~~~d~-~~~~~~~~~  166 (232)
T 3opn_A          102 --GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI-K--------PQFEAGREQVGKNGIIRDP-KVHQMTIEK  166 (232)
T ss_dssp             --CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE-C--------HHHHSCHHHHC-CCCCCCH-HHHHHHHHH
T ss_pred             --CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE-C--------cccccCHHHhCcCCeecCc-chhHHHHHH
Confidence              124544444444433   678999999999999999864 1        111111111100 000011 233458889


Q ss_pred             HHHHHHHCCCEEEEEEEe
Q 018003          324 LKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~  341 (362)
                      +.++++++||++......
T Consensus       167 l~~~l~~aGf~v~~~~~~  184 (232)
T 3opn_A          167 VLKTATQLGFSVKGLTFS  184 (232)
T ss_dssp             HHHHHHHHTEEEEEEEEC
T ss_pred             HHHHHHHCCCEEEEEEEc
Confidence            999999999998776543

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.53  E-value=5.7e-14  Score=131.88  Aligned_cols=116  Identities=15%  Similarity=0.216  Sum_probs=95.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..  +...++.++.+|+.+++++ 
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~--~l~~~v~~~~~d~~~~~~~-  114 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSN--NLTDRIVVIPGKVEEVSLP-  114 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHc--CCCCcEEEEEcchhhCCCC-
Confidence            455566665678899999999999999998874 35999999996 889999888765  2236899999999988765 


Q ss_pred             CcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          247 SSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++||+|++..+++|+.+  ....+.++.++|||||++++...+
T Consensus       115 ~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (348)
T 2y1w_A          115 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD  157 (348)
T ss_dssp             SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred             CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            67999999999888853  457888999999999999866443

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.53  E-value=4.3e-14  Score=135.23  Aligned_cols=124  Identities=9%  Similarity=-0.028  Sum_probs=96.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHH-------HHHHhhcCCCCCCCEEEE
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQESNFPKENFLLV  235 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a-------~~~~~~~~~~~~~~~~~~  235 (362)
                      ...+..+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.|       ++++... +....++.++
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~-Gl~~~nV~~i  306 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLY-GMRLNNVEFS  306 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHT-TBCCCCEEEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHc-CCCCCceEEE
Confidence            3445667777777789999999999999999999875445899999999999988       7777665 1113689999


Q ss_pred             EecCCCC--CC--CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          236 RADISRL--PF--ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       236 ~~d~~~~--p~--~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++|....  ++  ..++||+|+++.++ +.+++..+|+++.++|||||++++..+..
T Consensus       307 ~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          307 LKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             ESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             EcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence            9865432  22  24689999998776 44677889999999999999999875443

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.53  E-value=1.6e-13  Score=120.29  Aligned_cols=136  Identities=10%  Similarity=0.050  Sum_probs=108.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+++.+  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..  +...++.+..+|......+
T Consensus        12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~--gl~~~I~~~~gD~l~~~~~   87 (230)
T 3lec_A           12 LQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH--GLTSKIDVRLANGLSAFEE   87 (230)
T ss_dssp             HHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCCC--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECchhhcccc
Confidence            3566666655  78999999999999999999987678999999999999999999886  3345799999998776544


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      ...||+|+..++.-.  -...+|.+..+.|+++|.|+++..                                ...+.++
T Consensus        88 ~~~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp~--------------------------------~~~~~lr  133 (230)
T 3lec_A           88 ADNIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQPN--------------------------------NREDDLR  133 (230)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHH
T ss_pred             ccccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEECC--------------------------------CChHHHH
Confidence            447999886655331  245678889999999999887631                                1356899


Q ss_pred             HHHHHCCCEEEEEE
Q 018003          326 RIFRQFQLVVNLKL  339 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~  339 (362)
                      ++|.+.||.+++..
T Consensus       134 ~~L~~~Gf~i~~E~  147 (230)
T 3lec_A          134 KWLAANDFEIVAED  147 (230)
T ss_dssp             HHHHHTTEEEEEEE
T ss_pred             HHHHHCCCEEEEEE
Confidence            99999999887665

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.52  E-value=3.8e-14  Score=125.45  Aligned_cols=117  Identities=14%  Similarity=0.151  Sum_probs=93.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-  243 (362)
                      ...+...+...++.+|||+|||+|..+..+++..+..+|+++|+++.+++.|+++++..  +...++.++.+|+... + 
T Consensus        60 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~  137 (232)
T 3ntv_A           60 LDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY--HFENQVRIIEGNALEQFEN  137 (232)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT--TCTTTEEEEESCGGGCHHH
T ss_pred             HHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECCHHHHHHh
Confidence            34444444444578999999999999999999766779999999999999999998876  2235899999999664 3 


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ..+++||+|++...   ..+...+++++.++|||||++++....
T Consensus       138 ~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~  178 (232)
T 3ntv_A          138 VNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVL  178 (232)
T ss_dssp             HTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTT
T ss_pred             hccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCC
Confidence            33688999997654   446778999999999999999885443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.52  E-value=4.2e-14  Score=128.38  Aligned_cols=152  Identities=14%  Similarity=0.091  Sum_probs=100.5

Q ss_pred             HHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE-EecCCCCC--
Q 018003          168 LMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP--  243 (362)
Q Consensus       168 ~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~p--  243 (362)
                      .+++.+.. .++.+|||+|||||.++..+++.+ ..+|+|+|+|+.|++.+.++        ..++... ..++..++  
T Consensus        75 ~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~--------~~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           75 KALAVFNLSVEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQ--------DDRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHT--------CTTEEEECSCCGGGCCGG
T ss_pred             HHHHhcCCCccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh--------CcccceecccCceecchh
Confidence            34444443 357799999999999999998885 35899999999999986542        2344332 23443332  


Q ss_pred             -CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE-EccCCCCcchhhhHHHHHhhhhcccccccccccCCH
Q 018003          244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT-YIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                       ++..+||+|++..+++++   ..+|.++.|+|||||.+++.. |.++..   .....+     . ..-..+ ..+....
T Consensus       146 ~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~---~~~~~~-----~-G~vrd~-~~~~~~~  212 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALVKPQFEAG---REQIGK-----N-GIVRES-SIHEKVL  212 (291)
T ss_dssp             GCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEECGGGTSC---GGGCC------C-CCCCCH-HHHHHHH
T ss_pred             hCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEECcccccC---hhhcCC-----C-CccCCH-HHHHHHH
Confidence             334569999998887754   778999999999999998863 111100   000000     0 000001 2344577


Q ss_pred             HHHHHHHHHCCCEEEEEEEe
Q 018003          322 DDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      +++..+++++||.+......
T Consensus       213 ~~v~~~~~~~Gf~v~~~~~s  232 (291)
T 3hp7_A          213 ETVTAFAVDYGFSVKGLDFS  232 (291)
T ss_dssp             HHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHHCCCEEEEEEEC
Confidence            88999999999988776653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.52  E-value=1.3e-13  Score=121.27  Aligned_cols=114  Identities=22%  Similarity=0.277  Sum_probs=92.1

Q ss_pred             HHHhhcC--CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCC---CCCCEEEEEecCCC
Q 018003          168 LMKGYLK--PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRADISR  241 (362)
Q Consensus       168 ~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~d~~~  241 (362)
                      .+...+.  ..++.+|||+|||+|.++..+++. ++..+|+|+|+++.+++.+++++... +.   ...++.++++|+..
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD-DPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-CTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh-cccccCCCcEEEEECCccc
Confidence            4444443  556889999999999999999887 45569999999999999999988764 00   02579999999976


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .+...++||+|++..+++++      ++++.++|||||++++.+...
T Consensus       145 ~~~~~~~fD~i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          145 GYAEEAPYDAIHVGAAAPVV------PQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             CCGGGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEEEEESCT
T ss_pred             CcccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEecC
Confidence            65556789999999998886      468899999999999987643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.51  E-value=5.8e-14  Score=117.82  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=86.8

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CC
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FA  245 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~  245 (362)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++             ..++.++++|+...+        ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~-------------~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP-------------IVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC-------------CTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc-------------cCcEEEEEcccccchhhhhhhccCC
Confidence            456789999999999999999988 5667999999999 642             257899999998876        67


Q ss_pred             CCcceEEEecccccCCCCH-----------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          246 SSSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +++||+|++..++++..++           ..+++++.++|||||.+++.++..
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            7899999999999988777           789999999999999999988754

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.51  E-value=4.1e-14  Score=127.94  Aligned_cols=108  Identities=12%  Similarity=0.174  Sum_probs=84.3

Q ss_pred             CCCeEEEEcCccch----HHHHHHHh-CC---CCEEEEEeCCHHHHHHHHHHHhhc------------------C---CC
Q 018003          177 LGGNIIDASCGSGL----FSRIFAKS-GL---FSLVVALDYSENMLKQCYEFVQQE------------------S---NF  227 (362)
Q Consensus       177 ~~~~vLDiGcG~G~----~~~~l~~~-~~---~~~v~gvD~s~~~~~~a~~~~~~~------------------~---~~  227 (362)
                      ++.+|||+|||+|.    ++..+++. +.   +.+|+|+|+|+.|++.|++.+-..                  .   ++
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    45555554 21   248999999999999999864100                  0   00


Q ss_pred             -------CCCCEEEEEecCCCCCCC-CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEE
Q 018003          228 -------PKENFLLVRADISRLPFA-SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       228 -------~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~  284 (362)
                             ...++.|.++|+...|++ .++||+|+|.++++|++++  .++++++.+.|||||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                   003689999999887665 5789999999999999766  68999999999999999873

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.51  E-value=1.9e-13  Score=128.67  Aligned_cols=125  Identities=20%  Similarity=0.060  Sum_probs=101.2

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      +-.+.....+.......++.+|||+|||+|.++..++..+ +...++|+|+++.+++.|+++++..  + ..++.+.++|
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~--g-~~~i~~~~~D  262 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS--G-LSWIRFLRAD  262 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT--T-CTTCEEEECC
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc--C-CCceEEEeCC
Confidence            3345556677777777788999999999999999999876 6679999999999999999998876  1 2389999999


Q ss_pred             CCCCCCCCCcceEEEecccccCCCC--------HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          239 ISRLPFASSSIDAVHAGAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~vl~h~~d--------~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +.+++.+.+.||+|+++-.......        ...+++++.++|||||.+++.+++
T Consensus       263 ~~~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          263 ARHLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             GGGGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             hhhCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            9998877778999999755332111        257899999999999999998753

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.51  E-value=1.4e-13  Score=121.10  Aligned_cols=113  Identities=20%  Similarity=0.247  Sum_probs=91.9

Q ss_pred             HHHhhc--CCCCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHHHHHHHHHHHhhcCCC---CCCCEEEEEe
Q 018003          168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQESNF---PKENFLLVRA  237 (362)
Q Consensus       168 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~  237 (362)
                      .+.+.+  ...++.+|||+|||+|.++..+++..     +..+|+|+|+++.+++.|++++... +.   ...++.++.+
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~v~~~~~  147 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD-KPELLKIDNFKIIHK  147 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH-CGGGGSSTTEEEEEC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc-CccccccCCEEEEEC
Confidence            344444  34568899999999999999999875     4569999999999999999998775 00   0257999999


Q ss_pred             cCCCCC----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          238 DISRLP----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       238 d~~~~p----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |+....    ...++||+|++..+++|+      ++++.++|||||++++..+.
T Consensus       148 d~~~~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          148 NIYQVNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CGGGCCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             ChHhcccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence            997754    456789999999999886      47889999999999998764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.50  E-value=4e-13  Score=117.47  Aligned_cols=134  Identities=12%  Similarity=0.064  Sum_probs=105.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC-CCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~p~~  245 (362)
                      +.+.+++.+  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..  +...++.+..+|.. .++. 
T Consensus         7 ~~l~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--gl~~~i~~~~~d~l~~l~~-   81 (225)
T 3kr9_A            7 ELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH--GLKEKIQVRLANGLAAFEE-   81 (225)
T ss_dssp             HHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCG-
T ss_pred             HHHHHhCCC--CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCceEEEEECchhhhccc-
Confidence            456666654  78999999999999999999987778999999999999999999886  33457999999984 3432 


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      ...||+|+..+.-..  -...++.+....|+|+|+|++.. +                               .....++
T Consensus        82 ~~~~D~IviaG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~-~-------------------------------~~~~~vr  127 (225)
T 3kr9_A           82 TDQVSVITIAGMGGR--LIARILEEGLGKLANVERLILQP-N-------------------------------NREDDLR  127 (225)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGCTTCCEEEEEE-S-------------------------------SCHHHHH
T ss_pred             CcCCCEEEEcCCChH--HHHHHHHHHHHHhCCCCEEEEEC-C-------------------------------CCHHHHH
Confidence            226999987654221  14578999999999999988742 1                               1356799


Q ss_pred             HHHHHCCCEEEEEE
Q 018003          326 RIFRQFQLVVNLKL  339 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~  339 (362)
                      ++|.+.||.+++..
T Consensus       128 ~~L~~~Gf~i~~e~  141 (225)
T 3kr9_A          128 IWLQDHGFQIVAES  141 (225)
T ss_dssp             HHHHHTTEEEEEEE
T ss_pred             HHHHHCCCEEEEEE
Confidence            99999999887764

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.50  E-value=1.3e-13  Score=121.88  Aligned_cols=119  Identities=17%  Similarity=0.148  Sum_probs=95.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  242 (362)
                      .....+...+...++.+|||+|||+|..+..+++..+..+++++|+++.+++.|++++...  +...++.++.+|+... 
T Consensus        41 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~  118 (233)
T 2gpy_A           41 LGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL--GLESRIELLFGDALQLG  118 (233)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT--TCTTTEEEECSCGGGSH
T ss_pred             HHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECCHHHHH
Confidence            3344455555545678999999999999999999876679999999999999999998765  1235799999998764 


Q ss_pred             CCC--CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          243 PFA--SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       243 p~~--~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +..  +++||+|++....+   +...+++++.++|||||++++.+..
T Consensus       119 ~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~  162 (233)
T 2gpy_A          119 EKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVL  162 (233)
T ss_dssp             HHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred             HhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            433  57899999987753   7789999999999999999987543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.50  E-value=3.2e-13  Score=120.20  Aligned_cols=115  Identities=12%  Similarity=0.077  Sum_probs=96.5

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+...+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.|++++...  +...++.+..+|+.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           78 KDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKF--NLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHT--TCCTTEEEECSCTTTSC
T ss_pred             hhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHc--CCCCcEEEEEcChhhcc
Confidence            334577777777788999999999999999999883  59999999999999999988765  12368999999998754


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .++++||+|++     +.+++..+++++.++|||||++++.++.
T Consensus       154 ~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          154 VPEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CCTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             cCCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            35678999997     4568889999999999999999998864

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.50  E-value=2.7e-13  Score=119.79  Aligned_cols=136  Identities=12%  Similarity=0.044  Sum_probs=107.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+++.+  +.+|||||||+|.++..+++.++..+|+++|+++.+++.|+++++..  +...++.+..+|......+
T Consensus        12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--gl~~~I~v~~gD~l~~~~~   87 (244)
T 3gnl_A           12 LEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS--GLTEQIDVRKGNGLAVIEK   87 (244)
T ss_dssp             HHHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--TCTTTEEEEECSGGGGCCG
T ss_pred             HHHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--CCCceEEEEecchhhccCc
Confidence            3566666665  78999999999999999999987678999999999999999999876  3345799999998776544


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      ...||+|+..++.-.  -...+|.+..+.|+++|+|++...                                .....++
T Consensus        88 ~~~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~~--------------------------------~~~~~lr  133 (244)
T 3gnl_A           88 KDAIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQPN--------------------------------IAAWQLR  133 (244)
T ss_dssp             GGCCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHH
T ss_pred             cccccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEcC--------------------------------CChHHHH
Confidence            446999887554321  234678899999999999997631                                1356799


Q ss_pred             HHHHHCCCEEEEEE
Q 018003          326 RIFRQFQLVVNLKL  339 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~  339 (362)
                      ++|.+.||.+++..
T Consensus       134 ~~L~~~Gf~i~~E~  147 (244)
T 3gnl_A          134 EWSEQNNWLITSEA  147 (244)
T ss_dssp             HHHHHHTEEEEEEE
T ss_pred             HHHHHCCCEEEEEE
Confidence            99999999876544

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.50  E-value=1.1e-13  Score=121.48  Aligned_cols=116  Identities=12%  Similarity=0.055  Sum_probs=91.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCC-CCEEEEEecCCCC-
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPK-ENFLLVRADISRL-  242 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~d~~~~-  242 (362)
                      +..+....+..++.+|||+|||+|..+..+++.. ++++++++|+++.+++.|+++++..  +.. .++.++++|+.+. 
T Consensus        45 l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~~i~~~~gda~~~l  122 (221)
T 3dr5_A           45 LTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA--GYSPSRVRFLLSRPLDVM  122 (221)
T ss_dssp             HHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT--TCCGGGEEEECSCHHHHG
T ss_pred             HHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCcCcEEEEEcCHHHHH
Confidence            3444444454445699999999999999999864 3679999999999999999998875  223 5899999998654 


Q ss_pred             C-CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          243 P-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       243 p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      + +++++||+|++....   .+...+++++.++|||||++++...
T Consensus       123 ~~~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~  164 (221)
T 3dr5_A          123 SRLANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADA  164 (221)
T ss_dssp             GGSCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred             HHhcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            2 336889999986542   4567789999999999999998543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.50  E-value=3.6e-13  Score=120.34  Aligned_cols=110  Identities=14%  Similarity=0.103  Sum_probs=88.7

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCC--CCcc
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA--SSSI  249 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~--~~~f  249 (362)
                      ...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|+++++..  +...++.++++|+.+ ++..  .++|
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA--GVDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            334578999999999999999998855 679999999999999999998875  223589999999865 3322  3489


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      |+|++...   ..+...+++++.++|||||++++.....
T Consensus       138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          138 DLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             SEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             EEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            99998653   3456789999999999999999876543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.48  E-value=1.1e-12  Score=118.77  Aligned_cols=106  Identities=18%  Similarity=0.164  Sum_probs=90.6

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ..++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.|+++++.+   ...++.++++|+...+. .++||+|++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n---~l~~~~~~~~d~~~~~~-~~~~D~Vi~  192 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN---KLNNVIPILADNRDVEL-KDVADRVIM  192 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT---TCSSEEEEESCGGGCCC-TTCEEEEEE
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCCEEEEECChHHcCc-cCCceEEEE
Confidence            44578999999999999999999866679999999999999999998876   23578999999987743 578999998


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ....    +...++.++.+.|||||++++++...
T Consensus       193 d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          193 GYVH----KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             CCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence            7653    66788999999999999999887654

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.47  E-value=2.9e-13  Score=125.98  Aligned_cols=119  Identities=13%  Similarity=0.094  Sum_probs=90.9

Q ss_pred             HHHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          166 FELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       166 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ...+.+.+. ..++.+|||+|||+|.++..++..+.  +|+++|+|+.+++.|+++++.. +....++.++++|+.++..
T Consensus       141 ~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~-gl~~~~v~~i~~D~~~~l~  217 (332)
T 2igt_A          141 WEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQ  217 (332)
T ss_dssp             HHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc-CCCccceEEEECcHHHHHH
Confidence            344555543 34577999999999999999999876  9999999999999999998876 1111259999999876431


Q ss_pred             C----CCcceEEEeccc----------ccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 A----SSSIDAVHAGAA----------IHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 ~----~~~fD~V~~~~v----------l~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .    .++||+|++.--          +++..+...+++++.++|||||++++....
T Consensus       218 ~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          218 REERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             HHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             HHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            1    468999998432          233345678999999999999998887654

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.47  E-value=3.2e-13  Score=118.93  Aligned_cols=114  Identities=19%  Similarity=0.322  Sum_probs=89.5

Q ss_pred             HHHHhhc--CCCCCCeEEEEcCccchHHHHHHHhCC------CCEEEEEeCCHHHHHHHHHHHhhcCC--CCCCCEEEEE
Q 018003          167 ELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKSGL------FSLVVALDYSENMLKQCYEFVQQESN--FPKENFLLVR  236 (362)
Q Consensus       167 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~  236 (362)
                      ..+.+.+  ...++.+|||+|||+|.++..+++...      ..+|+++|+++.+++.|++++.....  ....++.++.
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~  151 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  151 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEE
Confidence            3445555  345688999999999999999887532      24899999999999999998765300  0025799999


Q ss_pred             ecCCCCCCCC-CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          237 ADISRLPFAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       237 ~d~~~~p~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +|... ++++ ++||+|++..+++|+.      +++.++|||||++++....
T Consensus       152 ~d~~~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          152 GDGRK-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             SCGGG-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             CCccc-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence            99876 4444 7899999999999874      7889999999999998754

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.47  E-value=6.6e-14  Score=124.23  Aligned_cols=99  Identities=16%  Similarity=0.112  Sum_probs=82.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CCCC-Cc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFAS-SS  248 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~~~-~~  248 (362)
                      ++.+|||||||+|..+..+++.    ++..+|+|+|+++.+++.|+.    .    ..++.++++|+...   +... .+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~----~~~v~~~~gD~~~~~~l~~~~~~~  152 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D----MENITLHQGDCSDLTTFEHLREMA  152 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G----CTTEEEEECCSSCSGGGGGGSSSC
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c----CCceEEEECcchhHHHHHhhccCC
Confidence            4679999999999999999887    566799999999999988872    1    36899999999884   5433 47


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHh-hccCCcEEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISR-VLRPGGVFVGTTY  286 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r-~LkpgG~li~~~~  286 (362)
                      ||+|++...  | .+...+++++.+ +|||||++++.+.
T Consensus       153 fD~I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          153 HPLIFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             SSEEEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             CCEEEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            999998665  4 378889999997 9999999998643

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.46  E-value=2.3e-13  Score=121.67  Aligned_cols=120  Identities=18%  Similarity=0.097  Sum_probs=88.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcCC-CCCCC-----------
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESN-FPKEN-----------  231 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~~~~-----------  231 (362)
                      +..+.+.+...++.+|||+|||+|.++..+++.  .+..+|+|+|+|+.+++.|++++..... ....+           
T Consensus        40 ~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (250)
T 1o9g_A           40 FQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERF  119 (250)
T ss_dssp             HHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhc
Confidence            344455554445779999999999999999887  4445899999999999999987653200 00001           


Q ss_pred             --------------EE-------------EEEecCCCCCC-----CCCcceEEEecccccCCCC---------HHHHHHH
Q 018003          232 --------------FL-------------LVRADISRLPF-----ASSSIDAVHAGAAIHCWSS---------PSTGVAE  270 (362)
Q Consensus       232 --------------~~-------------~~~~d~~~~p~-----~~~~fD~V~~~~vl~h~~d---------~~~~l~~  270 (362)
                                    +.             +.++|+.....     ...+||+|+++..+.+..+         ...++++
T Consensus       120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~  199 (250)
T 1o9g_A          120 GKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS  199 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH
Confidence                          55             99999877431     3448999999876655443         3489999


Q ss_pred             HHhhccCCcEEEEEE
Q 018003          271 ISRVLRPGGVFVGTT  285 (362)
Q Consensus       271 i~r~LkpgG~li~~~  285 (362)
                      +.++|||||++++..
T Consensus       200 ~~~~LkpgG~l~~~~  214 (250)
T 1o9g_A          200 LASALPAHAVIAVTD  214 (250)
T ss_dssp             HHHHSCTTCEEEEEE
T ss_pred             HHHhcCCCcEEEEeC
Confidence            999999999999843

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.46  E-value=6.7e-14  Score=139.74  Aligned_cols=106  Identities=18%  Similarity=0.259  Sum_probs=90.5

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEec
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~~  255 (362)
                      +.+|||||||.|.++..+++.|.  +|+|||+++.+++.|+......   +..++.+.+++++++  ++.+++||+|+++
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  141 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEEN---PDFAAEFRVGRIEEVIAALEEGEFDLAIGL  141 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTS---TTSEEEEEECCHHHHHHHCCTTSCSEEEEE
T ss_pred             CCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhc---CCCceEEEECCHHHHhhhccCCCccEEEEC
Confidence            67999999999999999999987  9999999999999999988765   135799999999887  4567899999999


Q ss_pred             ccccCCCCHHH--HHHHHHhhccCCcEEEEEEEcc
Q 018003          256 AAIHCWSSPST--GVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       256 ~vl~h~~d~~~--~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .+|||++||..  .+..+.+.|+++|..++.....
T Consensus       142 e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~  176 (569)
T 4azs_A          142 SVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV  176 (569)
T ss_dssp             SCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred             cchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence            99999999863  3556777888988877776554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.46  E-value=1.4e-12  Score=114.35  Aligned_cols=110  Identities=15%  Similarity=0.091  Sum_probs=87.7

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-CC---CC
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FA---SS  247 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~~---~~  247 (362)
                      ...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.|++++...  +...++.++++|+... + +.   .+
T Consensus        55 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           55 QIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA--NLNDRVEVRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            334578999999999999999999855 579999999999999999998765  2234699999998653 1 11   15


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +||+|++....   .+...+++++.++|||||++++.....
T Consensus       133 ~fD~v~~d~~~---~~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          133 PFDFIFIDADK---QNNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             CCSEEEECSCG---GGHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             CcCEEEEcCCc---HHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            79999987653   345688999999999999888865543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.45  E-value=1.8e-13  Score=118.98  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=85.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      ++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|+++++..  +...++.++.+|+... +..++ ||+|++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~-fD~v~~  132 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN--GLIDRVELQVGDPLGIAAGQRD-IDILFM  132 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--SGGGGEEEEESCHHHHHTTCCS-EEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCceEEEEEecHHHHhccCCC-CCEEEE
Confidence            467999999999999999998754 679999999999999999988765  1134699999998653 44446 999998


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ...   ..+...+++++.++|||||++++....
T Consensus       133 ~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~  162 (210)
T 3c3p_A          133 DCD---VFNGADVLERMNRCLAKNALLIAVNAL  162 (210)
T ss_dssp             ETT---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred             cCC---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence            743   357789999999999999999986543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.45  E-value=1.3e-12  Score=126.73  Aligned_cols=119  Identities=18%  Similarity=0.213  Sum_probs=97.4

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      ..+...+.+.++.+|||+|||+|..+..+++..++ ++++++|+++.+++.++++++..   +..++.++++|+..++  
T Consensus       249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~---g~~~v~~~~~D~~~~~~~  325 (450)
T 2yxl_A          249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM---GIKIVKPLVKDARKAPEI  325 (450)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCTTCCSSS
T ss_pred             HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc---CCCcEEEEEcChhhcchh
Confidence            34455667778899999999999999999987544 69999999999999999998876   2357999999998876  


Q ss_pred             CCCCcceEEEe------cccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 FASSSIDAVHA------GAAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +++++||+|++      ..++++.++.                ..+|+++.++|||||++++++...
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            55578999996      3455655553                578999999999999999988654

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.45  E-value=5.2e-13  Score=114.99  Aligned_cols=99  Identities=15%  Similarity=0.283  Sum_probs=80.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---------
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  243 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---------  243 (362)
                      ..++.+|||+|||+|.++..+++..+  ..+|+|+|+++..          .    ..++.++++|+...+         
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~----~~~v~~~~~d~~~~~~~~~~~~~~   85 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------P----IPNVYFIQGEIGKDNMNNIKNINY   85 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------C----CTTCEEEECCTTTTSSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------C----CCCceEEEccccchhhhhhccccc
Confidence            34578999999999999999998865  5799999999831          1    357899999998876         


Q ss_pred             ----------------CCCCcceEEEecccccCCC----CHH-------HHHHHHHhhccCCcEEEEEEEc
Q 018003          244 ----------------FASSSIDAVHAGAAIHCWS----SPS-------TGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ----------------~~~~~fD~V~~~~vl~h~~----d~~-------~~l~~i~r~LkpgG~li~~~~~  287 (362)
                                      +++++||+|++..++++..    |..       .+++++.++|||||.+++.++.
T Consensus        86 i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           86 IDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             ------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                            5667999999988877642    222       3789999999999999987764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.44  E-value=4.5e-13  Score=117.57  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=86.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-CCC----Cc
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FAS----SS  248 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~~~----~~  248 (362)
                      .++.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|+++++..  +...++.++++|+... + +..    ++
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA--GLSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC--CCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            3567999999999999999998754 579999999999999999998775  2235699999998543 2 111    78


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ||+|++...   ..+...+++++.++|||||++++.....
T Consensus       141 fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          141 YDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             EEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             ccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            999997554   2356789999999999999999876543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.44  E-value=3.2e-12  Score=120.99  Aligned_cols=153  Identities=14%  Similarity=0.081  Sum_probs=112.1

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .+.....+.... ..++.+|||+|||+|.++..++..+...+++|+|+|+.+++.|+++++..  +...++.+.++|+..
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~--gl~~~i~~~~~D~~~  279 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA--GVLDKIKFIQGDATQ  279 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--TCGGGCEEEECCGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--CCCCceEEEECChhh
Confidence            344555566665 66788999999999999999999876668999999999999999998876  223589999999999


Q ss_pred             CCCCCCcceEEEecccccCC-------CCH-HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccc
Q 018003          242 LPFASSSIDAVHAGAAIHCW-------SSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVG  313 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~-------~d~-~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (362)
                      +++++++||+|+++-....-       .+. ..+++++.++|  ||.+++.+.                           
T Consensus       280 ~~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------  330 (373)
T 3tm4_A          280 LSQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------  330 (373)
T ss_dssp             GGGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------
T ss_pred             CCcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------
Confidence            98888899999997553221       111 56788899988  555554432                           


Q ss_pred             cccccCCHHHHHHHHHHCCCEEEEEEE--ecee-EEEEeeCc
Q 018003          314 FSIPVLGFDDLKRIFRQFQLVVNLKLF--YGHI-QHYIVKIP  352 (362)
Q Consensus       314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~~--~g~~-~~~~~~kp  352 (362)
                            +.+.+++.+.+.||+..+...  .|.. ..+...+|
T Consensus       331 ------~~~~~~~~~~~~G~~~~~~~~~~nG~l~~~~~~~~~  366 (373)
T 3tm4_A          331 ------EKKAIEEAIAENGFEIIHHRVIGHGGLMVHLYVVKL  366 (373)
T ss_dssp             ------CHHHHHHHHHHTTEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             ------CHHHHHHHHHHcCCEEEEEEEEEcCCEEEEEEeccC
Confidence                  234677889999997765433  3433 44444443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.44  E-value=1.7e-13  Score=122.10  Aligned_cols=110  Identities=10%  Similarity=0.034  Sum_probs=89.0

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCC-----CC
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFA-----SS  247 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~-----~~  247 (362)
                      ..++.+|||||||+|..+..+++..+ +++|+++|+++.+++.|+++++..  +...++.++++|+... +..     .+
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~~~~i~~~~gda~~~l~~~~~~~~~~  135 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA--KQEHKIKLRLGPALDTLHSLLNEGGEH  135 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT--TCTTTEEEEESCHHHHHHHHHHHHCSS
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHhhccCCC
Confidence            34467999999999999999998753 679999999999999999998875  2245899999998654 211     47


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +||+|++...   ..+...+++++.++|||||++++......
T Consensus       136 ~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  174 (242)
T 3r3h_A          136 QFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWD  174 (242)
T ss_dssp             CEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred             CEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence            8999998765   23567889999999999999998765543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.44  E-value=4.7e-13  Score=130.56  Aligned_cols=114  Identities=15%  Similarity=0.248  Sum_probs=93.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+|+ +++.|+++++..  +...++.++.+|+.+++++ 
T Consensus       148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~--gl~~~v~~~~~d~~~~~~~-  222 (480)
T 3b3j_A          148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSN--NLTDRIVVIPGKVEEVSLP-  222 (480)
T ss_dssp             HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-
T ss_pred             HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHc--CCCCcEEEEECchhhCccC-
Confidence            445555555567899999999999999988864 46999999998 999999988765  2246899999999987765 


Q ss_pred             CcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ++||+|++..+++|+.+.  ...+.++.++|||||++++..
T Consensus       223 ~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            579999999888887654  467889999999999998643

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.43  E-value=6.7e-13  Score=124.92  Aligned_cols=102  Identities=21%  Similarity=0.339  Sum_probs=86.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe--
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA--  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~--  254 (362)
                      ++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.++.+  +...++.++.+|++++.++ ++||+|++  
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n--~~~~~i~~i~~~~~~~~lp-e~~DvivsE~  157 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFN--GLEDRVHVLPGPVETVELP-EQVDAIVSEW  157 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHT--TCTTTEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHc--CCCceEEEEeeeeeeecCC-ccccEEEeec
Confidence            578999999999999998888874 5899999996 889999888775  4467899999999998776 67999998  


Q ss_pred             -cccccCCCCHHHHHHHHHhhccCCcEEEE
Q 018003          255 -GAAIHCWSSPSTGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       255 -~~vl~h~~d~~~~l~~i~r~LkpgG~li~  283 (362)
                       ...+.+-.....++....|+|||||.++-
T Consensus       158 ~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          158 MGYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CBTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccccccccchhhhHHHHHHhhCCCCceECC
Confidence             34456656778899999999999999873

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.43  E-value=7.1e-13  Score=120.82  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=90.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +...+.+.+.+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++++...  +...++.++++|+...
T Consensus       109 e~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~--~l~~~v~~~~~D~~~~  185 (284)
T 1nv8_A          109 EELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERH--GVSDRFFVRKGEFLEP  185 (284)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHT--TCTTSEEEEESSTTGG
T ss_pred             HHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECcchhh
Confidence            344555555554335679999999999999999998 6779999999999999999998875  2223599999999763


Q ss_pred             CCCCCcc---eEEEec------------ccccCCC--------CHHHHHHHHH-hhccCCcEEEEEE
Q 018003          243 PFASSSI---DAVHAG------------AAIHCWS--------SPSTGVAEIS-RVLRPGGVFVGTT  285 (362)
Q Consensus       243 p~~~~~f---D~V~~~------------~vl~h~~--------d~~~~l~~i~-r~LkpgG~li~~~  285 (362)
                       ++ ++|   |+|+++            .+. |.+        |...+++++. +.|+|||++++..
T Consensus       186 -~~-~~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~  249 (284)
T 1nv8_A          186 -FK-EKFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  249 (284)
T ss_dssp             -GG-GGTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             -cc-cccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence             22 578   999997            222 322        2237899999 9999999999864

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.43  E-value=1.7e-12  Score=125.30  Aligned_cols=121  Identities=20%  Similarity=0.183  Sum_probs=98.9

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+...+.+.++.+|||+|||+|..+..+++.++.++++++|+++.+++.++++++..    ..++.++++|+..++
T Consensus       233 ~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~----g~~~~~~~~D~~~~~  308 (429)
T 1sqg_A          233 ASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL----GMKATVKQGDGRYPS  308 (429)
T ss_dssp             HHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT----TCCCEEEECCTTCTH
T ss_pred             HHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc----CCCeEEEeCchhhch
Confidence            3334555667778899999999999999999999876679999999999999999998876    335789999998876


Q ss_pred             --CCCCcceEEEe------cccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 --FASSSIDAVHA------GAAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 --~~~~~fD~V~~------~~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                        +++++||+|++      ..++.+.++.                ..+|+++.++|||||++++++...
T Consensus       309 ~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          309 QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             HHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             hhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence              55678999996      2455555553                378999999999999999988543

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.43  E-value=2.2e-13  Score=123.57  Aligned_cols=117  Identities=16%  Similarity=0.102  Sum_probs=92.9

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---  244 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---  244 (362)
                      +...+...++.+|||+|||+|..+..+++..++ .+|+|+|+++.+++.++++++..   +..++.++++|+..++.   
T Consensus        75 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~---g~~~v~~~~~D~~~~~~~~~  151 (274)
T 3ajd_A           75 PPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM---GVLNTIIINADMRKYKDYLL  151 (274)
T ss_dssp             HHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCHHHHHHHHH
T ss_pred             HHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh---CCCcEEEEeCChHhcchhhh
Confidence            344566778899999999999999999986443 69999999999999999998876   13489999999987654   


Q ss_pred             -CCCcceEEEec------cccc------------CCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          245 -ASSSIDAVHAG------AAIH------------CWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 -~~~~fD~V~~~------~vl~------------h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                       ..++||+|++.      .++.            +......+++++.++|||||++++++...
T Consensus       152 ~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          152 KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence             25789999986      2222            12355789999999999999999988654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.42  E-value=2.6e-13  Score=127.32  Aligned_cols=111  Identities=17%  Similarity=0.143  Sum_probs=87.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCc------cchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCG------SGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG------~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  235 (362)
                      ...++.++..+.. ++.+|||||||      +|..+..+++. .+..+|+|+|+|+.|..        .    ..++.++
T Consensus       203 ~~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~--------~----~~rI~fv  269 (419)
T 3sso_A          203 TPHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV--------D----ELRIRTI  269 (419)
T ss_dssp             HHHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG--------C----BTTEEEE
T ss_pred             HHHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh--------c----CCCcEEE
Confidence            3445555555443 36799999999      65555555544 56789999999999731        1    4689999


Q ss_pred             EecCCCCCCC------CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          236 RADISRLPFA------SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       236 ~~d~~~~p~~------~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++|+.++|+.      +++||+|++.. .+++.++..+|+++.++|||||++++.+..
T Consensus       270 ~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~  326 (419)
T 3sso_A          270 QGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW  326 (419)
T ss_dssp             ECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred             EecccccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence            9999998876      68999999875 467778889999999999999999998765

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.42  E-value=2.3e-13  Score=124.20  Aligned_cols=114  Identities=12%  Similarity=0.108  Sum_probs=88.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++...  +...++.++++|+..+
T Consensus        14 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~--~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           14 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGT--PVASKLQVLVGDVLKT   89 (285)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEESCTTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhc--CCCCceEEEEcceecc
Confidence            44567778888777889999999999999999999876  9999999999999999987643  1125799999999887


Q ss_pred             CCCCCcceEEEec-----------ccccCCCCHHHHH----HHH--HhhccCCcEEE
Q 018003          243 PFASSSIDAVHAG-----------AAIHCWSSPSTGV----AEI--SRVLRPGGVFV  282 (362)
Q Consensus       243 p~~~~~fD~V~~~-----------~vl~h~~d~~~~l----~~i--~r~LkpgG~li  282 (362)
                      +++  +||+|+++           .+++|.+++..++    +|+  +++|+|||.++
T Consensus        90 ~~~--~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           90 DLP--FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCC--CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             cch--hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            765  79999996           4455555443221    333  46999999664

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.41  E-value=9.1e-12  Score=117.94  Aligned_cols=105  Identities=17%  Similarity=0.072  Sum_probs=86.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCC-CCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPF-ASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~-~~~~fD~V~  253 (362)
                      .++.+|||+| |+|.++..++..++..+|+|+|+++.+++.|+++++.. +  ..++.++++|+.. +|. .+++||+|+
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~-g--~~~v~~~~~D~~~~l~~~~~~~fD~Vi  246 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI-G--YEDIEIFTFDLRKPLPDYALHKFDTFI  246 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH-T--CCCEEEECCCTTSCCCTTTSSCBSEEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-C--CCCEEEEEChhhhhchhhccCCccEEE
Confidence            3578999999 99999999998877679999999999999999998876 1  2389999999988 663 356899999


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEE-EEEE
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVF-VGTT  285 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~l-i~~~  285 (362)
                      ++..+++. ....+++++.++|||||++ +++.
T Consensus       247 ~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~  278 (373)
T 2qm3_A          247 TDPPETLE-AIRAFVGRGIATLKGPRCAGYFGI  278 (373)
T ss_dssp             ECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEE
T ss_pred             ECCCCchH-HHHHHHHHHHHHcccCCeEEEEEE
Confidence            98765433 2478899999999999954 5544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.41  E-value=5.9e-13  Score=118.91  Aligned_cols=107  Identities=10%  Similarity=0.040  Sum_probs=87.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-C-----CCC
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-----ASS  247 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~-----~~~  247 (362)
                      .++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++++..  +...++.++.+|+... + +     .++
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--g~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GVDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            3467999999999999999998754 579999999999999999998775  2235799999998653 3 1     157


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +||+|++...   ..+...+++++.++|||||++++....
T Consensus       156 ~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~  192 (247)
T 1sui_A          156 SYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL  192 (247)
T ss_dssp             CBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred             CEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence            8999998754   346788999999999999999886543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.40  E-value=1.2e-11  Score=107.02  Aligned_cols=114  Identities=15%  Similarity=0.163  Sum_probs=87.2

Q ss_pred             CCCcHHHHHHHHhhc---CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE
Q 018003          159 FPGPEKEFELMKGYL---KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV  235 (362)
Q Consensus       159 ~~~~~~~~~~l~~~l---~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  235 (362)
                      +..+......+...+   ...++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.+++++...    ..++.++
T Consensus        28 ~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~----~~~~~~~  102 (207)
T 1wy7_A           28 YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKVF  102 (207)
T ss_dssp             CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEEE
T ss_pred             ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHc----CCCEEEE
Confidence            344444444444332   345678999999999999999998853 47999999999999999998766    2289999


Q ss_pred             EecCCCCCCCCCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEE
Q 018003          236 RADISRLPFASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       236 ~~d~~~~p~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li  282 (362)
                      ++|+..++   ++||+|+++..+++..  ....+++++.++|  ||.++
T Consensus       103 ~~d~~~~~---~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~  146 (207)
T 1wy7_A          103 IGDVSEFN---SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYS  146 (207)
T ss_dssp             ESCGGGCC---CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEE
T ss_pred             ECchHHcC---CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEE
Confidence            99998875   4899999998877764  3357889999988  55443

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.39  E-value=2.7e-12  Score=113.88  Aligned_cols=117  Identities=20%  Similarity=0.182  Sum_probs=90.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p  243 (362)
                      ...+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|+++++..  +...++.++.+|+... +
T Consensus        49 ~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~v~~~~~d~~~~~~  126 (239)
T 2hnk_A           49 GQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN--GLENKIFLKLGSALETLQ  126 (239)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCCEEEEECCHHHHHH
Confidence            34444444444578999999999999999998854 569999999999999999998765  1124599999997542 2


Q ss_pred             --------------CCC--CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 --------------FAS--SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 --------------~~~--~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                                    |++  ++||+|++....+   +...+++++.++|||||++++.+..
T Consensus       127 ~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~  183 (239)
T 2hnk_A          127 VLIDSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVL  183 (239)
T ss_dssp             HHHHCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             HHHhhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEccc
Confidence                          222  7899999886543   4568899999999999999987544

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.38  E-value=3e-12  Score=112.77  Aligned_cols=157  Identities=11%  Similarity=0.047  Sum_probs=113.3

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +..+...+..  ..+|||+|||+|.++..+....+..+|+++|+++.+++.+++++...    ..+..+.+.|...-+ +
T Consensus       123 Y~~i~~~i~~--p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----g~~~~~~v~D~~~~~-p  195 (281)
T 3lcv_B          123 YRELFRHLPR--PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----NVPHRTNVADLLEDR-L  195 (281)
T ss_dssp             HHHHGGGSCC--CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----TCCEEEEECCTTTSC-C
T ss_pred             HHHHHhccCC--CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeeecccC-C
Confidence            4445555533  67999999999999999988878889999999999999999999886    456888999987655 4


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      .+.||+|+++-+++|+.+-.  ..+ ++...|+|+|+++- .|...-. ...+.+                  .-.-...
T Consensus       196 ~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVS-fp~ksl~-Grs~gm------------------~~~Y~~~  254 (281)
T 3lcv_B          196 DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVT-FPTKSLG-QRSKGM------------------FQNYSQS  254 (281)
T ss_dssp             CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEE-EECC--------CH------------------HHHHHHH
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEe-ccchhhc-CCCcch------------------hhHHHHH
Confidence            67899999999999996543  444 89999999997763 3331100 000111                  1112356


Q ss_pred             HHHHHHHCCCEEEEEEEeceeEEEEeeC
Q 018003          324 LKRIFRQFQLVVNLKLFYGHIQHYIVKI  351 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~g~~~~~~~~k  351 (362)
                      |+..+.+.|. .++...++.--.|+.+|
T Consensus       255 ~e~~~~~~g~-~~~~~~~~nEl~y~i~k  281 (281)
T 3lcv_B          255 FESQARERSC-RIQRLEIGNELIYVIQK  281 (281)
T ss_dssp             HHHHHHHHTC-CEEEEEETTEEEEEEC-
T ss_pred             HHHHHHhcCC-ceeeeeecCeeEEEecC
Confidence            8888999999 45566666666665543

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.38  E-value=4.3e-12  Score=118.86  Aligned_cols=127  Identities=11%  Similarity=0.100  Sum_probs=97.4

Q ss_pred             CCCCCcHHHHHHHHhh---c-CCCCCCeEEEEcCccchHHHHHHHhCCC-----CEEEEEeCCHHHHHHHHHHHhhcCCC
Q 018003          157 GGFPGPEKEFELMKGY---L-KPVLGGNIIDASCGSGLFSRIFAKSGLF-----SLVVALDYSENMLKQCYEFVQQESNF  227 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~---l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----~~v~gvD~s~~~~~~a~~~~~~~~~~  227 (362)
                      +.+++|......+...   + .+.++.+|||+|||+|.++..+++..+.     .+++|+|+++.+++.|+.++...   
T Consensus       106 g~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~---  182 (344)
T 2f8l_A          106 NHQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ---  182 (344)
T ss_dssp             GGCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH---
T ss_pred             CcCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC---
Confidence            4456676654443333   2 4446789999999999999988876432     58999999999999999988766   


Q ss_pred             CCCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHH------------------HHHHHHHhhccCCcEEEEEEEcc
Q 018003          228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS------------------TGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       228 ~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~------------------~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                       ..++.++++|..... ..+.||+|+++-.+.++++..                  .+++++.+.|||||++++.+|+.
T Consensus       183 -g~~~~i~~~D~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          183 -RQKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             -TCCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             -CCCceEEECCCCCcc-ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence             236889999986633 457899999998776654332                  57999999999999999998763

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.38  E-value=2.2e-12  Score=118.40  Aligned_cols=106  Identities=16%  Similarity=0.162  Sum_probs=85.4

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEecc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGA  256 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~~~  256 (362)
                      .+|||||||+|.++..+++..+..+++++|+++.+++.|++++...   ...+++++++|+..+  .+++++||+|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~---~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIP---RAPRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCC---CTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcccc---CCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            4999999999999999999767779999999999999999987542   246899999998654  23467899999864


Q ss_pred             cccCCC----CHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          257 AIHCWS----SPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       257 vl~h~~----d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ..+...    ....++++++++|||||++++....
T Consensus       168 ~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          168 FAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             STTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            322211    1257899999999999999988754

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.37  E-value=3.4e-12  Score=115.74  Aligned_cols=109  Identities=14%  Similarity=0.146  Sum_probs=84.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCC-CCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~-~p~~~~~fD~V~~  254 (362)
                      .+.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++.... +...+++.++.+|+.. ++...++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4679999999999999999887445699999999999999999875310 1124689999999865 3334578999999


Q ss_pred             cccccCCCC----HHHHHHHHHhhccCCcEEEEEE
Q 018003          255 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       255 ~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ....+..+.    ...+++++.++|||||++++..
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            654322211    2578999999999999999874

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.37  E-value=2.9e-12  Score=117.50  Aligned_cols=109  Identities=13%  Similarity=0.097  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc-CCCCCCCEEEEEecCCC-CCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISR-LPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~-~p~~~~~fD~V~~  254 (362)
                      .+.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++... .+...+++.++.+|+.. ++...++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            357999999999999999998755579999999999999999987531 00114689999999765 3444678999998


Q ss_pred             cccccCCC-----CHHHHHHHHHhhccCCcEEEEEE
Q 018003          255 GAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       255 ~~vl~h~~-----d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ...-.++.     ....+++++.++|||||++++..
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            53311021     12688999999999999999874

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.36  E-value=1.3e-12  Score=115.62  Aligned_cols=108  Identities=15%  Similarity=0.051  Sum_probs=86.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CCCCC--Cc
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFAS--SS  248 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p~~~--~~  248 (362)
                      .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.|+++++..  +...++.++.+|+.+    ++..+  ++
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA--GVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            3467999999999999999998754 569999999999999999988765  123479999999743    23333  78


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ||+|++....   .+...+++++.++|||||++++.....
T Consensus       149 fD~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          149 FDLIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             EEEEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             cCEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            9999987652   356789999999999999999875543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.36  E-value=1.3e-12  Score=114.90  Aligned_cols=109  Identities=14%  Similarity=0.074  Sum_probs=87.2

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-CCC----
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-FAS----  246 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~~~----  246 (362)
                      ...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.|+++++..  +...++.++.+|+... + +..    
T Consensus        66 ~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--g~~~~i~~~~~d~~~~~~~~~~~~~~  143 (229)
T 2avd_A           66 RLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--EAEHKIDLRLKPALETLDELLAAGEA  143 (229)
T ss_dssp             HHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             HhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--CCCCeEEEEEcCHHHHHHHHHhcCCC
Confidence            334578999999999999999998744 579999999999999999998765  2236899999998543 1 211    


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++||+|++...   ..+...+++++.++|+|||++++....
T Consensus       144 ~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          144 GTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             TCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             CCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            68999998654   345678999999999999999986544

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.36  E-value=1.6e-11  Score=110.88  Aligned_cols=135  Identities=18%  Similarity=0.224  Sum_probs=104.6

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      .++.+.+.+  |.+|||+|||+|.++..++..+. .+|+++|+++.+++.++++++.+  +...++.++++|...++ ..
T Consensus       117 ~ri~~~~~~--g~~VlD~~aG~G~~~i~~a~~g~-~~V~avD~np~a~~~~~~N~~~N--~v~~~v~~~~~D~~~~~-~~  190 (278)
T 3k6r_A          117 VRMAKVAKP--DELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFP-GE  190 (278)
T ss_dssp             HHHHHHCCT--TCEEEETTCTTTTTTHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCC-CC
T ss_pred             HHHHHhcCC--CCEEEEecCcCcHHHHHHHHhcC-CeEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEeCcHHHhc-cc
Confidence            455555554  88999999999999999998863 58999999999999999998876  34567999999998876 35


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      +.||.|+++.-    +....+|..+.++|||||++.+.......                        ...-...+.+++
T Consensus       191 ~~~D~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~------------------------~~~~~~~e~i~~  242 (278)
T 3k6r_A          191 NIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK------------------------LMPREPFETFKR  242 (278)
T ss_dssp             SCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG------------------------GTTTTTHHHHHH
T ss_pred             cCCCEEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeeccc------------------------ccchhHHHHHHH
Confidence            78999997642    34557889999999999998776544221                        111233467888


Q ss_pred             HHHHCCCEE
Q 018003          327 IFRQFQLVV  335 (362)
Q Consensus       327 ll~~~Gf~~  335 (362)
                      +++..|+..
T Consensus       243 ~~~~~g~~v  251 (278)
T 3k6r_A          243 ITKEYGYDV  251 (278)
T ss_dssp             HHHHTTCEE
T ss_pred             HHHHcCCcE
Confidence            899999964

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.35  E-value=6.1e-12  Score=107.74  Aligned_cols=100  Identities=19%  Similarity=0.277  Sum_probs=77.1

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCC---------CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE-EecCCCCC-
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLV-RADISRLP-  243 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~d~~~~p-  243 (362)
                      ..++.+|||+|||+|.++..+++..+.         .+|+|+|+++.+              ...++.++ .+|+...+ 
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------------CCTTCEEECSCCTTSHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------------cCCCCeEEEeccCCCHHH
Confidence            456889999999999999999988432         699999999831              02467888 88987653 


Q ss_pred             -------CCCCcceEEEecccccCC----CCH-------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          244 -------FASSSIDAVHAGAAIHCW----SSP-------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       244 -------~~~~~fD~V~~~~vl~h~----~d~-------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                             +++++||+|++...++..    .|+       ..+++++.++|||||.+++.++..
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence                   335689999997654432    333       478999999999999999987643

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.35  E-value=6.8e-12  Score=108.04  Aligned_cols=90  Identities=16%  Similarity=0.154  Sum_probs=72.8

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      ...++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.|++++        .++.++++|+..++   ++||+|+
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~--------~~~~~~~~d~~~~~---~~~D~v~  115 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC--------GGVNFMVADVSEIS---GKYDTWI  115 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC--------TTSEEEECCGGGCC---CCEEEEE
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhc--------CCCEEEECcHHHCC---CCeeEEE
Confidence            34467899999999999999998874 347999999999999999873        27899999998875   6899999


Q ss_pred             ecccccCCCC--HHHHHHHHHhhc
Q 018003          254 AGAAIHCWSS--PSTGVAEISRVL  275 (362)
Q Consensus       254 ~~~vl~h~~d--~~~~l~~i~r~L  275 (362)
                      ++..++|+.+  ...+++++.+++
T Consensus       116 ~~~p~~~~~~~~~~~~l~~~~~~~  139 (200)
T 1ne2_A          116 MNPPFGSVVKHSDRAFIDKAFETS  139 (200)
T ss_dssp             ECCCC-------CHHHHHHHHHHE
T ss_pred             ECCCchhccCchhHHHHHHHHHhc
Confidence            9999999865  347899999998

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.34  E-value=3e-12  Score=119.14  Aligned_cols=110  Identities=18%  Similarity=0.175  Sum_probs=84.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc-CCCCCCCEEEEEecCCCC-C-CCCCcceEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISRL-P-FASSSIDAV  252 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~~-p-~~~~~fD~V  252 (362)
                      .++.+|||||||+|.++..+++..+..+|+++|+|+.+++.|++++... .+....++.++++|+... + .++++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            3467999999999999999998766679999999999999999987541 001136899999998653 2 345789999


Q ss_pred             Eecccc--cCCCC--HHHHHHHHHhhccCCcEEEEEE
Q 018003          253 HAGAAI--HCWSS--PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       253 ~~~~vl--~h~~d--~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ++....  ++..+  ...+++++.++|||||++++..
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            986542  11111  3689999999999999999864

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.34  E-value=2.2e-12  Score=119.27  Aligned_cols=110  Identities=17%  Similarity=0.114  Sum_probs=86.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc-CC-CCCCCEEEEEecCCC-CCCCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SN-FPKENFLLVRADISR-LPFASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~-~~~~~~~~~~~d~~~-~p~~~~~fD~V~  253 (362)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... .+ ...+++.++.+|+.. ++..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            457999999999999999998755679999999999999999987541 00 014689999999866 344467899999


Q ss_pred             ecccccC-CCC------HHHHHHHHHhhccCCcEEEEEEE
Q 018003          254 AGAAIHC-WSS------PSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       254 ~~~vl~h-~~d------~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +....++ ...      ...+++++.++|||||++++...
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  196 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTG  196 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEcc
Confidence            9765543 112      26889999999999999998754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.34  E-value=5.6e-13  Score=120.77  Aligned_cols=112  Identities=18%  Similarity=0.146  Sum_probs=80.8

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE--EecCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV--RADISRLPFA  245 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--~~d~~~~p~~  245 (362)
                      .+.+.....++.+|||+|||+|.++..+++.   .+|+|+|+++ |+..++++.... .....++.++  ++|+..+|  
T Consensus        73 ~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~--  145 (276)
T 2wa2_A           73 WIDERGGVELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLV-ETFGWNLITFKSKVDVTKME--  145 (276)
T ss_dssp             HHHHTTSCCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCC-CCTTGGGEEEECSCCGGGCC--
T ss_pred             HHHHcCCCCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhh-hhcCCCeEEEeccCcHhhCC--
Confidence            3334333456889999999999999999987   3899999998 543332210000 0001268888  89998876  


Q ss_pred             CCcceEEEecccccCCCCHH-------HHHHHHHhhccCCc--EEEEEEEc
Q 018003          246 SSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPGG--VFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpgG--~li~~~~~  287 (362)
                      +++||+|++..+ ++..++.       .+|+++.++|||||  .|++.++.
T Consensus       146 ~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          146 PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            678999999887 5554432       37899999999999  99987765

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.34  E-value=1e-11  Score=120.86  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=93.1

Q ss_pred             HHhhcCCC--CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-
Q 018003          169 MKGYLKPV--LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-  244 (362)
Q Consensus       169 l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-  244 (362)
                      +...+.+.  ++.+|||+|||+|..+..+++.. ..+.|+++|+++.+++.+++++++.   +..++.++++|+..++. 
T Consensus       107 ~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~---g~~nv~~~~~D~~~~~~~  183 (479)
T 2frx_A          107 PVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC---GISNVALTHFDGRVFGAA  183 (479)
T ss_dssp             HHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH---TCCSEEEECCCSTTHHHH
T ss_pred             HHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---CCCcEEEEeCCHHHhhhh
Confidence            34455666  78999999999999999999874 2469999999999999999998876   23579999999988764 


Q ss_pred             CCCcceEEEec------ccccCCCC----------------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          245 ASSSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       245 ~~~~fD~V~~~------~vl~h~~d----------------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ..++||+|++.      .++.+.++                ...+|+++.++|||||+|+++|-..
T Consensus       184 ~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          184 VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            45789999973      33443333                1367999999999999999988654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.34  E-value=7.6e-13  Score=119.24  Aligned_cols=113  Identities=19%  Similarity=0.131  Sum_probs=81.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEE--EecCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLV--RADISRLPF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~--~~d~~~~p~  244 (362)
                      ..+.+.....++.+|||+|||+|.++..+++.   .+|+|+|+++ |+..+++..... .....++.++  ++|+..++ 
T Consensus        64 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~-~~~~~~v~~~~~~~D~~~l~-  137 (265)
T 2oxt_A           64 AWMEERGYVELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRIT-ESYGWNIVKFKSRVDIHTLP-  137 (265)
T ss_dssp             HHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCC-CBTTGGGEEEECSCCTTTSC-
T ss_pred             HHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhh-hccCCCeEEEecccCHhHCC-
Confidence            33444333456889999999999999999887   3899999998 533322110000 0001268888  89998876 


Q ss_pred             CCCcceEEEecccccCCCCHH-------HHHHHHHhhccCCc--EEEEEEEc
Q 018003          245 ASSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPGG--VFVGTTYI  287 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpgG--~li~~~~~  287 (362)
                       +++||+|++..+ ++..++.       .+|+++.++|||||  .|++.++.
T Consensus       138 -~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          138 -VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             -CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             -CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence             678999999877 6555542       37899999999999  99987765

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.34  E-value=6.2e-12  Score=116.52  Aligned_cols=109  Identities=14%  Similarity=0.173  Sum_probs=84.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      ++.+|||||||+|.++..+++..+..+++++|+|+.+++.|++++.... +...++++++++|+... +..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4579999999999999999987556799999999999999999876410 01136899999998653 333578999998


Q ss_pred             cccccCCC---C--HHHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWS---S--PSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~---d--~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ... +++.   .  ...+++++.++|||||++++...
T Consensus       196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  231 (321)
T 2pt6_A          196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  231 (321)
T ss_dssp             ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence            653 2221   1  16889999999999999998754

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.33  E-value=2.2e-12  Score=118.69  Aligned_cols=112  Identities=13%  Similarity=0.110  Sum_probs=85.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc-CCCCCCCEEEEEecCCC-CCCCCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-SNFPKENFLLVRADISR-LPFASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~d~~~-~p~~~~~fD~V~  253 (362)
                      .++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++... .+...+++.++.+|+.. ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            3467999999999999999998866679999999999999999987641 00114689999999865 344467899999


Q ss_pred             ecccccCCCC----HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~~d----~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +....+..+.    ...+++++.++|||||++++...+
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            8654322111    236899999999999999987644

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.33  E-value=2.6e-12  Score=124.10  Aligned_cols=117  Identities=20%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~  245 (362)
                      .+...+...++.+|||+|||+|..+..+++... .+.|+++|+++.+++.+++++++.   +.. +.++++|+..++ ..
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~---G~~-v~~~~~Da~~l~~~~  167 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW---GAP-LAVTQAPPRALAEAF  167 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH---CCC-CEEECSCHHHHHHHH
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---CCe-EEEEECCHHHhhhhc
Confidence            445566777899999999999999999998743 368999999999999999999887   123 889999987765 34


Q ss_pred             CCcceEEEec------ccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          246 SSSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       246 ~~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .++||+|++.      .++.+-++.                ..+|+++.++|||||+|+.+|-..
T Consensus       168 ~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          168 GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            6789999952      334333332                578999999999999999887543

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.32  E-value=1.5e-11  Score=107.37  Aligned_cols=148  Identities=11%  Similarity=0.022  Sum_probs=106.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+.   +...|+|+|+++.+++.+++.+...    ..+..+..+|....+.+ +++|+|+++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~----g~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK----DWDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT----TCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc----CCCceEEEeecccCCCC-CCcchHHHH
Confidence            457799999999999998877   4569999999999999999998776    57889999999887754 589999999


Q ss_pred             ccccCCCCHH-HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCE
Q 018003          256 AAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV  334 (362)
Q Consensus       256 ~vl~h~~d~~-~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~  334 (362)
                      -++||+.+.. ..+-++...|+++|+++ +.|...-. ...+                  .+.-.-...|+..+ ...+.
T Consensus       176 k~lh~LE~q~~~~~~~ll~aL~~~~vvV-sfPtksl~-Gr~~------------------gm~~~Y~~~~e~~~-~~~~~  234 (253)
T 3frh_A          176 KLLPLLEREQAGSAMALLQSLNTPRMAV-SFPTRSLG-GRGK------------------GMEANYAAWFEGGL-PAEFE  234 (253)
T ss_dssp             SCHHHHHHHSTTHHHHHHHHCBCSEEEE-EEECC------------------------------CHHHHHHHHS-CTTEE
T ss_pred             HHHHHhhhhchhhHHHHHHHhcCCCEEE-EcChHHhc-CCCc------------------chhhHHHHHHHHHh-hccch
Confidence            8888875332 23338888999987655 55532100 0000                  11112234566666 56677


Q ss_pred             EEEEEEeceeEEEEeeCc
Q 018003          335 VNLKLFYGHIQHYIVKIP  352 (362)
Q Consensus       335 ~v~~~~~g~~~~~~~~kp  352 (362)
                      +++...+|.--.|+.+|.
T Consensus       235 ~~~~~~~~nEl~~~i~~~  252 (253)
T 3frh_A          235 IEDKKTIGTELIYLIKKN  252 (253)
T ss_dssp             EEEEEEETTEEEEEEEEC
T ss_pred             hhhheecCceEEEEEecC
Confidence            888888888888887763

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.32  E-value=3.6e-12  Score=113.06  Aligned_cols=106  Identities=13%  Similarity=0.114  Sum_probs=85.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-C-----CCC
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-F-----ASS  247 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-~-----~~~  247 (362)
                      .++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++++..  +...++.++.+|+.+. + +     ..+
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--g~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--GVEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            3467999999999999999998754 679999999999999999998775  2235799999998653 2 2     157


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +||+|++...-   .+...+++++.++|||||++++...
T Consensus       147 ~fD~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~  182 (237)
T 3c3y_A          147 SYDFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNT  182 (237)
T ss_dssp             CEEEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred             CcCEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecC
Confidence            89999986432   3557889999999999999987653

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.31  E-value=1.4e-11  Score=105.61  Aligned_cols=98  Identities=16%  Similarity=0.220  Sum_probs=75.5

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-------C-
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-------S-  246 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-------~-  246 (362)
                      ..++.+|||+|||+|.++..+++.  ..+|+|+|+++..              ...++.++++|+...+..       . 
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~--------------~~~~v~~~~~D~~~~~~~~~~~~~~~~   86 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME--------------EIAGVRFIRCDIFKETIFDDIDRALRE   86 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC--------------CCTTCEEEECCTTSSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc--------------cCCCeEEEEccccCHHHHHHHHHHhhc
Confidence            456889999999999999999988  4599999999741              136899999999876521       1 


Q ss_pred             ---CcceEEEecccccCCC----C-------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          247 ---SSIDAVHAGAAIHCWS----S-------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       247 ---~~fD~V~~~~vl~h~~----d-------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                         ++||+|++........    |       ...+++.+.++|||||.|++..+..
T Consensus        87 ~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           87 EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence               4899999975432211    1       2467889999999999999887643

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.30  E-value=5.2e-12  Score=113.59  Aligned_cols=100  Identities=12%  Similarity=0.076  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .+.+|||||||+|.++..+++. + .+++++|+++.+++.|++++.... +...+++.++.+|.....   ++||+|++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            4579999999999999998887 5 799999999999999998653310 011468999999987764   789999986


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                           ..||..+++++.++|||||++++...
T Consensus       147 -----~~dp~~~~~~~~~~L~pgG~lv~~~~  172 (262)
T 2cmg_A          147 -----QEPDIHRIDGLKRMLKEDGVFISVAK  172 (262)
T ss_dssp             -----SCCCHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -----CCChHHHHHHHHHhcCCCcEEEEEcC
Confidence                 36788899999999999999998654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.30  E-value=4.6e-12  Score=122.16  Aligned_cols=117  Identities=15%  Similarity=0.078  Sum_probs=91.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FA  245 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~  245 (362)
                      .+...+.+.++.+|||+|||+|..+..++... ..+.|+++|+++.+++.+++++++.   +..++.++++|+..++ ..
T Consensus        96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~---g~~nv~v~~~Da~~l~~~~  172 (456)
T 3m4x_A           96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW---GVSNAIVTNHAPAELVPHF  172 (456)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH---TCSSEEEECCCHHHHHHHH
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCceEEEeCCHHHhhhhc
Confidence            44556677789999999999999999988763 2369999999999999999999887   2457999999987764 23


Q ss_pred             CCcceEEEecc------cccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~~------vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +++||+|++..      ++.+-++.                ..+|+++.++|||||+|+.+|-.
T Consensus       173 ~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  236 (456)
T 3m4x_A          173 SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT  236 (456)
T ss_dssp             TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred             cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence            57899999742      22221111                16799999999999999988754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.30  E-value=1.8e-12  Score=115.56  Aligned_cols=112  Identities=14%  Similarity=0.224  Sum_probs=86.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.+++++...     .++.++++|+..+
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~-----~~v~~~~~D~~~~   88 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDH-----DNFQVLNKDILQF   88 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTC-----CSEEEECCCGGGC
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhccC-----CCeEEEEChHHhC
Confidence            45567778888777889999999999999999999874  9999999999999999986542     5899999999998


Q ss_pred             CCCC-CcceEEEec-----------ccccCCCCHHHHH----HHHHhhccCCcEEE
Q 018003          243 PFAS-SSIDAVHAG-----------AAIHCWSSPSTGV----AEISRVLRPGGVFV  282 (362)
Q Consensus       243 p~~~-~~fD~V~~~-----------~vl~h~~d~~~~l----~~i~r~LkpgG~li  282 (362)
                      ++++ ..|+ |+++           ..++|...+..++    +.+.|+++|+|.+.
T Consensus        89 ~~~~~~~~~-vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l~  143 (244)
T 1qam_A           89 KFPKNQSYK-IFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSLA  143 (244)
T ss_dssp             CCCSSCCCE-EEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHHH
T ss_pred             CcccCCCeE-EEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcchh
Confidence            8764 4564 4433           3344444444444    44788888888654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.29  E-value=5.3e-12  Score=114.96  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=85.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~  253 (362)
                      .++.+|||+|||+|.++..+++..+..+++++|+++.+++.|++++.... +...+++.++.+|+... +...++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            34679999999999999999887666799999999999999999875420 00146899999998653 32357899999


Q ss_pred             ecccccCCCCH----HHHHHHHHhhccCCcEEEEEEE
Q 018003          254 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       254 ~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +....++.+..    ..+++++.++|||||++++...
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  193 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCE  193 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence            86543222211    5889999999999999998743

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.29  E-value=3.4e-12  Score=117.73  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=81.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCC-CCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISR-LPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~-~p~~~~~fD~V~~  254 (362)
                      ++.+|||||||+|..+..+++..+..+++++|+++.+++.|++++.... +...+++.++.+|+.. ++..+++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            3579999999999999999987666799999999999999999875420 0014689999999865 3334678999998


Q ss_pred             cccccCCCCH-----HHHHHHHHhhccCCcEEEEEE
Q 018003          255 GAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       255 ~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ... +++..+     ..+++++.++|||||++++..
T Consensus       188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            653 333211     578999999999999999865

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.26  E-value=9.1e-12  Score=113.30  Aligned_cols=107  Identities=12%  Similarity=0.096  Sum_probs=83.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CC-------CCCCEEEEEecCCCC-CCCCC
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF-------PKENFLLVRADISRL-PFASS  247 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~-------~~~~~~~~~~d~~~~-p~~~~  247 (362)
                      ++.+|||||||+|.++..+++. +..+++++|+++.+++.|++++ ... +.       ..+++.++.+|+... +. ++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            4679999999999999999988 5679999999999999999987 220 00       246899999997542 22 57


Q ss_pred             cceEEEecccccCCCC-----HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          248 SIDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d-----~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +||+|++.... ++..     ...+++++.++|||||++++....
T Consensus       152 ~fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          152 GFDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             CEEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CeeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            89999986543 2211     257899999999999999987543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.26  E-value=1.9e-11  Score=116.66  Aligned_cols=109  Identities=17%  Similarity=0.157  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC-CCCEEEEEecCCCCCC----CCCcce
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP-KENFLLVRADISRLPF----ASSSID  250 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~d~~~~p~----~~~~fD  250 (362)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++.+  +. ..++.++++|+.....    ...+||
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~n--gl~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN--KLDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT--TCCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHhcCCCCC
Confidence            357899999999999999999986 359999999999999999998876  11 2279999999876421    146899


Q ss_pred             EEEecc---------cccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          251 AVHAGA---------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       251 ~V~~~~---------vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +|++.-         +.++..+...++.++.++|+|||++++++..
T Consensus       296 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          296 VIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             EEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            999863         2333355678899999999999999988743

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.25  E-value=1.8e-11  Score=116.23  Aligned_cols=109  Identities=14%  Similarity=0.130  Sum_probs=84.0

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC-CEEEEEecCCCC-CC---CCCcce
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE-NFLLVRADISRL-PF---ASSSID  250 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~d~~~~-p~---~~~~fD  250 (362)
                      .++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|+++++.+  +... ++.++++|+.+. +.   ...+||
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga-~~V~~vD~s~~al~~A~~N~~~n--~~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEAN--HLDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHT--TCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHc--CCCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            4578999999999999999998652 48999999999999999998876  1122 899999998653 21   245899


Q ss_pred             EEEecccc-----cCCCCH----HHHHHHHHhhccCCcEEEEEEEc
Q 018003          251 AVHAGAAI-----HCWSSP----STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       251 ~V~~~~vl-----~h~~d~----~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +|++.--.     .+..+.    ..+++++.++|+|||++++++..
T Consensus       288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~  333 (385)
T 2b78_A          288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  333 (385)
T ss_dssp             EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            99985332     233333    35678889999999999988743

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.24  E-value=3e-11  Score=114.73  Aligned_cols=105  Identities=14%  Similarity=0.029  Sum_probs=81.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~V~~~  255 (362)
                      ++.+|||+|||+|.++..++..+.  .|+++|+|+.+++.|+++++.+    .....+.++|+.+.. ...+.||+|++.
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~n----g~~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRL----GLRVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH----TCCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHh----CCCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            488999999999999999999876  6999999999999999998876    222356688886542 213449999986


Q ss_pred             ccccC---------CCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          256 AAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       256 ~vl~h---------~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .....         ..+...+++.+.++|||||.+++.+..
T Consensus       288 pP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          288 PPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            43211         123357899999999999999977654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.23  E-value=7.4e-14  Score=124.61  Aligned_cols=113  Identities=12%  Similarity=0.133  Sum_probs=88.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+|+.+++.+++++..     ..++.++++|+..+++
T Consensus        17 ~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~-----~~~v~~~~~D~~~~~~   89 (245)
T 1yub_A           17 VLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQF   89 (245)
T ss_dssp             THHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTTC
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhcc-----CCceEEEECChhhcCc
Confidence            34677777777778899999999999999999987  4999999999999998876542     3689999999999887


Q ss_pred             CC-CcceEEEecc-----------cccCCCCHHHHH----HHHHhhccCCcEEEEEE
Q 018003          245 AS-SSIDAVHAGA-----------AIHCWSSPSTGV----AEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~~-~~fD~V~~~~-----------vl~h~~d~~~~l----~~i~r~LkpgG~li~~~  285 (362)
                      +. ++| .|+++-           +++|..++...+    +.+.|+|||||.+++.+
T Consensus        90 ~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           90 PNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             CCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             ccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            64 678 566542           234444555556    77999999999887644

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.22  E-value=2.8e-11  Score=123.21  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=88.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~~~fD~V~~~  255 (362)
                      ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.|+++++.+ +....++.++++|+.+ ++...++||+|++.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~n-gl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~D  616 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLN-GLTGRAHRLIQADCLAWLREANEQFDLIFID  616 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT-TCCSTTEEEEESCHHHHHHHCCCCEEEEEEC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHc-CCCccceEEEecCHHHHHHhcCCCccEEEEC
Confidence            478999999999999999988764 47999999999999999998876 2222579999999876 34445789999985


Q ss_pred             c-----------cccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          256 A-----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       256 ~-----------vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      -           ++++..+...+++++.++|+|||+|++++..
T Consensus       617 PP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          617 PPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            4           2333445668899999999999999987654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.22  E-value=6.2e-11  Score=113.87  Aligned_cols=119  Identities=18%  Similarity=0.257  Sum_probs=92.1

Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEE
Q 018003          156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL  234 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  234 (362)
                      .+.++++....+.+.+.+...++.+|||+|||+|.++..++++. +..+++|+|+++.+++.|            .++.+
T Consensus        18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a------------~~~~~   85 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEG   85 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEE
T ss_pred             CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC------------CCCcE
Confidence            35677888888999988876567799999999999999998763 446999999999988765            26889


Q ss_pred             EEecCCCCCCCCCcceEEEeccccc----------CCCCH-------------------HHHHHHHHhhccCCcEEEEEE
Q 018003          235 VRADISRLPFASSSIDAVHAGAAIH----------CWSSP-------------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       235 ~~~d~~~~p~~~~~fD~V~~~~vl~----------h~~d~-------------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +++|+...+ ..++||+|+++--..          |+.+.                   ..+++.+.++|+|||++++.+
T Consensus        86 ~~~D~~~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~  164 (421)
T 2ih2_A           86 ILADFLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV  164 (421)
T ss_dssp             EESCGGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeCChhhcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEE
Confidence            999997765 346899999962221          12111                   156899999999999999998


Q ss_pred             Ec
Q 018003          286 YI  287 (362)
Q Consensus       286 ~~  287 (362)
                      |.
T Consensus       165 p~  166 (421)
T 2ih2_A          165 PA  166 (421)
T ss_dssp             EG
T ss_pred             Ch
Confidence            86

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.21  E-value=3.5e-11  Score=116.56  Aligned_cols=129  Identities=14%  Similarity=0.141  Sum_probs=102.4

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-------------CCCEEEEEeCCHHHHHHHHHHHhh
Q 018003          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------LFSLVVALDYSENMLKQCYEFVQQ  223 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------~~~~v~gvD~s~~~~~~a~~~~~~  223 (362)
                      +.+++|....+.+.+.+.+.++.+|||.|||+|.++..+.+..             ...+++|+|+++.+++.|+.++..
T Consensus       151 G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l  230 (445)
T 2okc_A          151 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  230 (445)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             CcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH
Confidence            4578888988999999888888899999999999998887641             124799999999999999998766


Q ss_pred             cCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCCC-----------------HHHHHHHHHhhccCCcEEEEEEE
Q 018003          224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS-----------------PSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       224 ~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d-----------------~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      . +....++.+.++|....+.. ++||+|+++-.+.+...                 ...+++++.++|||||++++.+|
T Consensus       231 ~-g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          231 H-GIGTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             T-TCCSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             h-CCCcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            5 11112677899998776643 48999999866554321                 13789999999999999999987


Q ss_pred             c
Q 018003          287 I  287 (362)
Q Consensus       287 ~  287 (362)
                      .
T Consensus       309 ~  309 (445)
T 2okc_A          309 D  309 (445)
T ss_dssp             H
T ss_pred             C
Confidence            5

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.21  E-value=1.3e-11  Score=117.14  Aligned_cols=106  Identities=19%  Similarity=0.179  Sum_probs=84.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC----CCCcceEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~----~~~~fD~V  252 (362)
                      ++.+|||+|||+|.++..++...  .+|+|+|+|+.+++.|+++++.+   ...++.++++|+.....    ..++||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n---~~~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLN---GLGNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHT---TCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc---CCCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            57899999999999999999873  48999999999999999998876   13459999999876431    15689999


Q ss_pred             Eecccc---------cCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          253 HAGAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       253 ~~~~vl---------~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++.--.         ....+...++.++.++|+|||.+++++..
T Consensus       284 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          284 VLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             EECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            985321         11123457899999999999999988754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.21  E-value=2.1e-11  Score=116.35  Aligned_cols=109  Identities=14%  Similarity=0.091  Sum_probs=86.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC----CCCcceEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~----~~~~fD~V  252 (362)
                      ++.+|||+|||+|.++..+++.+ ..+|+|+|+++.+++.|+++++.+  +...++.++++|+.+...    ..++||+|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n--~~~~~v~~~~~d~~~~~~~~~~~~~~fD~V  293 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLN--GVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  293 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc--CCCccceEEECCHHHHHHHHHhhCCCCCEE
Confidence            57899999999999999999874 358999999999999999998876  112389999999866431    25689999


Q ss_pred             Eecccc---------cCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          253 HAGAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       253 ~~~~vl---------~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++....         ++..+...++.++.++|+|||.+++.+...
T Consensus       294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            985322         222345678999999999999999887653

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.20  E-value=6.1e-12  Score=115.62  Aligned_cols=104  Identities=13%  Similarity=0.073  Sum_probs=75.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeC----CHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCCCCCCCCcc
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY----SENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSI  249 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~p~~~~~f  249 (362)
                      ..++.+|||+|||+|.++..+++.+   +|+|+|+    ++.+++....  +   .....++.++++ |+..+|  .++|
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~~---~V~gvD~~~~~~~~~~~~~~~--~---~~~~~~v~~~~~~D~~~l~--~~~f  149 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGLK---NVREVKGLTKGGPGHEEPIPM--S---TYGWNLVRLQSGVDVFFIP--PERC  149 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTST---TEEEEEEECCCSTTSCCCCCC--C---STTGGGEEEECSCCTTTSC--CCCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhcC---CEEEEeccccCchhHHHHHHh--h---hcCCCCeEEEeccccccCC--cCCC
Confidence            3467899999999999999999873   7999999    5543321110  0   011257899999 888775  5689


Q ss_pred             eEEEeccccc---CCCCHH---HHHHHHHhhccCCcEEEEEEEcc
Q 018003          250 DAVHAGAAIH---CWSSPS---TGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       250 D~V~~~~vl~---h~~d~~---~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      |+|++..+.+   +..|..   .+|+++.++|||||.|++.++..
T Consensus       150 D~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          150 DTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             SEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            9999977653   222222   57899999999999999876543

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.20  E-value=4e-10  Score=108.68  Aligned_cols=112  Identities=17%  Similarity=0.223  Sum_probs=86.0

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC--
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--  241 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--  241 (362)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|+++++..   ...++.++++|+..  
T Consensus       273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~--~~V~gvD~s~~al~~A~~n~~~~---~~~~v~f~~~d~~~~l  347 (433)
T 1uwv_A          273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLN---GLQNVTFYHENLEEDV  347 (433)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCTTSCC
T ss_pred             HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHHHHc---CCCceEEEECCHHHHh
Confidence            345666677776678899999999999999999885  49999999999999999998765   13489999999977  


Q ss_pred             --CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          242 --LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       242 --~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                        +++.+++||+|++.---...   ..+++.+.+ ++|+++++++
T Consensus       348 ~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvs  388 (433)
T 1uwv_A          348 TKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVS  388 (433)
T ss_dssp             SSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEE
T ss_pred             hhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEE
Confidence              34566789999985322111   245555544 7898888875

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.19  E-value=6.5e-11  Score=107.55  Aligned_cols=118  Identities=14%  Similarity=0.033  Sum_probs=83.9

Q ss_pred             cCCCCCCeEEEEcC------ccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEE-EEecCCCCCC
Q 018003          173 LKPVLGGNIIDASC------GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL-VRADISRLPF  244 (362)
Q Consensus       173 l~~~~~~~vLDiGc------G~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~d~~~~p~  244 (362)
                      +...++.+|||+||      |+|.  ..+++. ++..+|+|+|+++. +               .++.+ +++|+..+++
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v---------------~~v~~~i~gD~~~~~~  120 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V---------------SDADSTLIGDCATVHT  120 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B---------------CSSSEEEESCGGGCCC
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C---------------CCCEEEEECccccCCc
Confidence            34567889999999      4466  334444 33579999999997 1               25678 9999988775


Q ss_pred             CCCcceEEEecccccC--------C---CCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccc
Q 018003          245 ASSSIDAVHAGAAIHC--------W---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVG  313 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h--------~---~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (362)
                      . ++||+|+++...+.        .   .....+++++.++|||||.|++..+...                        
T Consensus       121 ~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~------------------------  175 (290)
T 2xyq_A          121 A-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS------------------------  175 (290)
T ss_dssp             S-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS------------------------
T ss_pred             c-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC------------------------
Confidence            4 68999999743221        1   1124789999999999999998764321                        


Q ss_pred             cccccCCHHHHHHHHHHCCCEEEEEE
Q 018003          314 FSIPVLGFDDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       314 ~~~~~~s~~~l~~ll~~~Gf~~v~~~  339 (362)
                            ...++.+++++.||..++..
T Consensus       176 ------~~~~l~~~l~~~GF~~v~~~  195 (290)
T 2xyq_A          176 ------WNADLYKLMGHFSWWTAFVT  195 (290)
T ss_dssp             ------CCHHHHHHHTTEEEEEEEEE
T ss_pred             ------CHHHHHHHHHHcCCcEEEEE
Confidence                  11367788888888766554

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.16  E-value=1.7e-10  Score=105.25  Aligned_cols=88  Identities=10%  Similarity=0.152  Sum_probs=77.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..     ..++.++++|+..+
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~-----~~~v~vi~gD~l~~  108 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKEL-----YNNIEIIWGDALKV  108 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHH-----CSSEEEEESCTTTS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhcc-----CCCeEEEECchhhC
Confidence            45567788888888889999999999999999999865  999999999999999998874     36899999999999


Q ss_pred             CCCCCcceEEEeccc
Q 018003          243 PFASSSIDAVHAGAA  257 (362)
Q Consensus       243 p~~~~~fD~V~~~~v  257 (362)
                      ++++..||+|+++..
T Consensus       109 ~~~~~~fD~Iv~NlP  123 (295)
T 3gru_A          109 DLNKLDFNKVVANLP  123 (295)
T ss_dssp             CGGGSCCSEEEEECC
T ss_pred             CcccCCccEEEEeCc
Confidence            888888999998754

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.16  E-value=1.2e-10  Score=106.88  Aligned_cols=109  Identities=17%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.+++++...   ...++.++++|+..+
T Consensus        28 ~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~---~~~~v~~~~~D~~~~  102 (299)
T 2h1r_A           28 PGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYE---GYNNLEVYEGDAIKT  102 (299)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHT---TCCCEEC----CCSS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc---CCCceEEEECchhhC
Confidence            34456777777777789999999999999999998864  9999999999999999988654   136899999999888


Q ss_pred             CCCCCcceEEEecccccCCCCHH--HHH---------------HHHHhhccCCc
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPS--TGV---------------AEISRVLRPGG  279 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~--~~l---------------~~i~r~LkpgG  279 (362)
                      ++  ++||+|+++...+ +..+.  .++               +.+.|+++++|
T Consensus       103 ~~--~~~D~Vv~n~py~-~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          103 VF--PKFDVCTANIPYK-ISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             CC--CCCSEEEEECCGG-GHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             Cc--ccCCEEEEcCCcc-cccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            75  3799999865433 33332  223               44678888877

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.13  E-value=2.4e-10  Score=106.62  Aligned_cols=106  Identities=14%  Similarity=0.151  Sum_probs=85.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+...+.  ++.+|||+|||+|.++.. ++.  ..+|+|+|+|+.+++.|+++++.+  +...++.++++|+....   +
T Consensus       188 ~i~~~~~--~~~~VLDlg~G~G~~~l~-a~~--~~~V~~vD~s~~ai~~a~~n~~~n--~l~~~v~~~~~D~~~~~---~  257 (336)
T 2yx1_A          188 RIMKKVS--LNDVVVDMFAGVGPFSIA-CKN--AKKIYAIDINPHAIELLKKNIKLN--KLEHKIIPILSDVREVD---V  257 (336)
T ss_dssp             HHHHHCC--TTCEEEETTCTTSHHHHH-TTT--SSEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCGGGCC---C
T ss_pred             HHHHhcC--CCCEEEEccCccCHHHHh-ccC--CCEEEEEECCHHHHHHHHHHHHHc--CCCCcEEEEECChHHhc---C
Confidence            3344443  478999999999999998 763  469999999999999999998876  22357999999998765   7


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +||+|++...    .....+++++.++|+|||.+++.+..
T Consensus       258 ~fD~Vi~dpP----~~~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          258 KGNRVIMNLP----KFAHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             CEEEEEECCT----TTGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCcEEEECCc----HhHHHHHHHHHHHcCCCCEEEEEEee
Confidence            8999998532    12237899999999999999988765

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.13  E-value=2.4e-10  Score=108.54  Aligned_cols=136  Identities=14%  Similarity=0.051  Sum_probs=99.1

Q ss_pred             hhhhhhhccCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------
Q 018003          148 RGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------  201 (362)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------  201 (362)
                      ++||...  ...+-.+.....++......++..|||.+||+|.++..++..+.+                          
T Consensus       174 rgyr~~~--~~Apl~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~  251 (393)
T 3k0b_A          174 RGYRLAQ--GSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADAR  251 (393)
T ss_dssp             CSTTTTS--CSCSCCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHH
T ss_pred             cccccCC--CCCCCcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHH
Confidence            4455432  223334566677777777777889999999999999888765432                          


Q ss_pred             ------------CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc-cCC---CCHH
Q 018003          202 ------------SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HCW---SSPS  265 (362)
Q Consensus       202 ------------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl-~h~---~d~~  265 (362)
                                  .+++|+|+++.+++.|++++...  +...++.+.++|+.+++.+ .+||+|+++--. +.+   .+..
T Consensus       252 ~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~--gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~  328 (393)
T 3k0b_A          252 QEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEA--GLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVR  328 (393)
T ss_dssp             HHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHT--TCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHH
T ss_pred             HHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHH
Confidence                        46999999999999999998876  2234699999999988754 589999998432 112   1234


Q ss_pred             HHHHHHHhhccC--CcEEEEEEEcc
Q 018003          266 TGVAEISRVLRP--GGVFVGTTYIV  288 (362)
Q Consensus       266 ~~l~~i~r~Lkp--gG~li~~~~~~  288 (362)
                      .+.+++.+.||+  ||.+++.+...
T Consensus       329 ~ly~~lg~~lk~~~g~~~~iit~~~  353 (393)
T 3k0b_A          329 QLYREMGIVYKRMPTWSVYVLTSYE  353 (393)
T ss_dssp             HHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred             HHHHHHHHHHhcCCCCEEEEEECCH
Confidence            566777777776  99999887653

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.11  E-value=9.3e-10  Score=105.60  Aligned_cols=99  Identities=21%  Similarity=0.226  Sum_probs=77.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++.+ +  .. +.++++|+.++.. . +||+|++.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~n-g--l~-v~~~~~d~~~~~~-~-~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEIN-N--VD-AEFEVASDREVSV-K-GFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH-T--CC-EEEEECCTTTCCC-T-TCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHc-C--Cc-EEEEECChHHcCc-c-CCCEEEEc
Confidence            4578999999999999999998765  9999999999999999998776 1  23 9999999988753 2 89999985


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      -.-..  -...+++.+. .|+|||+++++.
T Consensus       361 PPr~g--~~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          361 PPRAG--LHPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             CCTTC--SCHHHHHHHH-HHCCSEEEEEES
T ss_pred             CCccc--hHHHHHHHHH-hcCCCcEEEEEC
Confidence            43211  1234566665 599999999874

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.09  E-value=5.2e-10  Score=105.83  Aligned_cols=123  Identities=12%  Similarity=0.051  Sum_probs=94.9

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------------------CE
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SL  203 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~  203 (362)
                      .+.....++......++..+||.+||+|.++..++..+.+                                      .+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            3556666777777777889999999999999888765432                                      46


Q ss_pred             EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecccc-cCCC---CHHHHHHHHHhhccC--
Q 018003          204 VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAI-HCWS---SPSTGVAEISRVLRP--  277 (362)
Q Consensus       204 v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl-~h~~---d~~~~l~~i~r~Lkp--  277 (362)
                      ++|+|+++.+++.|+++++..  +....+.+.++|+.+++.+ .+||+|+++--. +.+.   +...+.+++.+.||+  
T Consensus       259 v~GvDid~~al~~Ar~Na~~~--gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~  335 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREV--GLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK  335 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred             EEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence            999999999999999998876  2234699999999988754 489999998442 2232   334677777778876  


Q ss_pred             CcEEEEEEEc
Q 018003          278 GGVFVGTTYI  287 (362)
Q Consensus       278 gG~li~~~~~  287 (362)
                      ||.+++.++.
T Consensus       336 g~~~~iit~~  345 (384)
T 3ldg_A          336 TWSQFILTND  345 (384)
T ss_dssp             TSEEEEEESC
T ss_pred             CcEEEEEECC
Confidence            9999988764

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.07  E-value=6.6e-10  Score=105.36  Aligned_cols=124  Identities=15%  Similarity=0.035  Sum_probs=95.6

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--------------------------------------C
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------S  202 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~  202 (362)
                      -.+.....+.......++.+|||.+||+|.++..++..+.+                                      .
T Consensus       179 l~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  258 (385)
T 3ldu_A          179 IRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKF  258 (385)
T ss_dssp             CCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCC
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCc
Confidence            34556677777777778899999999999999888776322                                      4


Q ss_pred             EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccccc-CC---CCHHHHHHHHHhhccC-
Q 018003          203 LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIH-CW---SSPSTGVAEISRVLRP-  277 (362)
Q Consensus       203 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~-h~---~d~~~~l~~i~r~Lkp-  277 (362)
                      +|+|+|+++.+++.|++++...  +...++.+.++|+.+++.+ ++||+|+++--.. .+   .+...+.+++.+.||+ 
T Consensus       259 ~V~GvDid~~ai~~Ar~Na~~~--gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~  335 (385)
T 3ldu_A          259 KIYGYDIDEESIDIARENAEIA--GVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKL  335 (385)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             eEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhC
Confidence            7999999999999999998876  2234799999999888754 5899999976532 22   2334677777778877 


Q ss_pred             -CcEEEEEEEc
Q 018003          278 -GGVFVGTTYI  287 (362)
Q Consensus       278 -gG~li~~~~~  287 (362)
                       ||.+++.+..
T Consensus       336 ~g~~~~iit~~  346 (385)
T 3ldu_A          336 KNWSYYLITSY  346 (385)
T ss_dssp             BSCEEEEEESC
T ss_pred             CCCEEEEEECC
Confidence             8988888764

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.05  E-value=7.4e-10  Score=98.97  Aligned_cols=85  Identities=11%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++...     .++.++++|+..+
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~~-----~~v~~i~~D~~~~   87 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQQ-----KNITIYQNDALQF   87 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTTC-----TTEEEEESCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhhC-----CCcEEEEcchHhC
Confidence            44567788888888899999999999999999999874  9999999999999999987653     6899999999998


Q ss_pred             CCCC----CcceEEEec
Q 018003          243 PFAS----SSIDAVHAG  255 (362)
Q Consensus       243 p~~~----~~fD~V~~~  255 (362)
                      ++++    +.|| |+++
T Consensus        88 ~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           88 DFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             CGGGSCCSSCEE-EEEE
T ss_pred             CHHHhccCCCeE-EEec
Confidence            7643    4688 5544

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.03  E-value=2.9e-09  Score=97.86  Aligned_cols=117  Identities=14%  Similarity=0.070  Sum_probs=85.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      .+...+.+.++.+|||+|||+|..+..+++. +..+.|+++|+++.+++.+++++++.   +..++.++++|+..++...
T Consensus        93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~---g~~~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA---GVSCCELAEEDFLAVSPSD  169 (309)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGSCTTC
T ss_pred             HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc---CCCeEEEEeCChHhcCccc
Confidence            3444566778999999999999999998886 33469999999999999999999876   2357999999997765322


Q ss_pred             ---CcceEEEec------ccccCCCC-----------H-------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          247 ---SSIDAVHAG------AAIHCWSS-----------P-------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       247 ---~~fD~V~~~------~vl~h~~d-----------~-------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                         ++||.|++.      .++..-+|           .       ..+|+.+.++|+ ||+++.+|-..
T Consensus       170 ~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          170 PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             cccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence               579999973      22322111           1       146777888887 99988876543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.01  E-value=1.3e-08  Score=95.58  Aligned_cols=164  Identities=12%  Similarity=0.071  Sum_probs=101.9

Q ss_pred             CCeEEEEcCccchHHHHHHH--------h-------CCCCEEEEEeCCHHHHHHHHHHHhhcCC---------CCCCC--
Q 018003          178 GGNIIDASCGSGLFSRIFAK--------S-------GLFSLVVALDYSENMLKQCYEFVQQESN---------FPKEN--  231 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~---------~~~~~--  231 (362)
                      ..+|+|+|||+|.++..+..        .       .+..+|+.-|+-.+.....=+.+....+         ....+  
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            57899999999999877622        1       1556888999877654444333332100         00001  


Q ss_pred             -EEEEEecCCCCCCCCCcceEEEecccccCCCC--------------------------------------HHHHHHHHH
Q 018003          232 -FLLVRADISRLPFASSSIDAVHAGAAIHCWSS--------------------------------------PSTGVAEIS  272 (362)
Q Consensus       232 -~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d--------------------------------------~~~~l~~i~  272 (362)
                       +.-+.+.+..-.+++++||+|+++.+||++.+                                      ...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence             22233444445688999999999999999873                                      234688899


Q ss_pred             hhccCCcEEEEEEEccCCCCcch---------hhhHHH-HHhhhhc------ccccccccccCCHHHHHHHHH-HCCCEE
Q 018003          273 RVLRPGGVFVGTTYIVDGPFNLI---------PFSRLL-RQVCFLD------LKIVGFSIPVLGFDDLKRIFR-QFQLVV  335 (362)
Q Consensus       273 r~LkpgG~li~~~~~~~~~~~~~---------~~~~~~-~~~~~~~------~~~~~~~~~~~s~~~l~~ll~-~~Gf~~  335 (362)
                      +.|+|||+++++...........         ..+... .......      .........+.+.++++.+++ ..||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            99999999999999775432111         011111 1100000      000111456789999999998 599987


Q ss_pred             EEEEEe
Q 018003          336 NLKLFY  341 (362)
Q Consensus       336 v~~~~~  341 (362)
                      .....+
T Consensus       293 ~~le~~  298 (374)
T 3b5i_A          293 DKLVVY  298 (374)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            665544

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.99  E-value=1.1e-09  Score=98.61  Aligned_cols=86  Identities=17%  Similarity=0.200  Sum_probs=73.1

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ...++.+.+.+...++ +|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..      .++.++++|+..+
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~------~~v~vi~~D~l~~  103 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG------LPVRLVFQDALLY  103 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT------SSEEEEESCGGGS
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC------CCEEEEECChhhC
Confidence            4556788888888888 999999999999999999874  999999999999999998642      4899999999988


Q ss_pred             CCCCC-cceEEEeccc
Q 018003          243 PFASS-SIDAVHAGAA  257 (362)
Q Consensus       243 p~~~~-~fD~V~~~~v  257 (362)
                      ++++. .+|.|+++--
T Consensus       104 ~~~~~~~~~~iv~NlP  119 (271)
T 3fut_A          104 PWEEVPQGSLLVANLP  119 (271)
T ss_dssp             CGGGSCTTEEEEEEEC
T ss_pred             ChhhccCccEEEecCc
Confidence            77643 6898887754

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.99  E-value=9.6e-10  Score=108.70  Aligned_cols=130  Identities=12%  Similarity=0.024  Sum_probs=99.9

Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC----C--------------CCEEEEEeCCHHHHHHH
Q 018003          156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----L--------------FSLVVALDYSENMLKQC  217 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----~--------------~~~v~gvD~s~~~~~~a  217 (362)
                      .+.+++|....+.+.+.+.+.++.+|||.+||+|.++..+.+..    .              ...++|+|+++.+++.|
T Consensus       148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            35688888888888888888888999999999999988776541    0              13799999999999999


Q ss_pred             HHHHhhcCCCCCCC-----EEEEEecCCCCC-CCCCcceEEEecccccCCCC--------------HHHHHHHHHhhccC
Q 018003          218 YEFVQQESNFPKEN-----FLLVRADISRLP-FASSSIDAVHAGAAIHCWSS--------------PSTGVAEISRVLRP  277 (362)
Q Consensus       218 ~~~~~~~~~~~~~~-----~~~~~~d~~~~p-~~~~~fD~V~~~~vl~h~~d--------------~~~~l~~i~r~Lkp  277 (362)
                      +.++... +  ...     ..+.++|....+ ...+.||+|+++--+.....              ...++..+.+.|||
T Consensus       228 ~~nl~l~-g--i~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~  304 (541)
T 2ar0_A          228 LMNCLLH-D--IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP  304 (541)
T ss_dssp             HHHHHTT-T--CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE
T ss_pred             HHHHHHh-C--CCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC
Confidence            9887654 1  122     678899986643 34578999999855433211              23789999999999


Q ss_pred             CcEEEEEEEcc
Q 018003          278 GGVFVGTTYIV  288 (362)
Q Consensus       278 gG~li~~~~~~  288 (362)
                      ||++.+.+|..
T Consensus       305 gGr~a~V~p~~  315 (541)
T 2ar0_A          305 GGRAAVVVPDN  315 (541)
T ss_dssp             EEEEEEEEEHH
T ss_pred             CCEEEEEecCc
Confidence            99999998753

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.96  E-value=4.7e-09  Score=98.62  Aligned_cols=159  Identities=14%  Similarity=0.028  Sum_probs=100.4

Q ss_pred             CCeEEEEcCccchHHHHHHHh-----------------CCCCEEEEEeCC-----------HHHHHHHHHHHhhcCCCCC
Q 018003          178 GGNIIDASCGSGLFSRIFAKS-----------------GLFSLVVALDYS-----------ENMLKQCYEFVQQESNFPK  229 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~gvD~s-----------~~~~~~a~~~~~~~~~~~~  229 (362)
                      ..+|+|+||++|.++..+...                 .|..+|+..|+-           +.+.+..++..     +..
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-----g~~  127 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-----GRK  127 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT-----CCC
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc-----cCC
Confidence            468999999999998877664                 244678899987           44433332221     111


Q ss_pred             CCEEEEEecCC---CCCCCCCcceEEEecccccCCCCHH---------------------------------------HH
Q 018003          230 ENFLLVRADIS---RLPFASSSIDAVHAGAAIHCWSSPS---------------------------------------TG  267 (362)
Q Consensus       230 ~~~~~~~~d~~---~~p~~~~~fD~V~~~~vl~h~~d~~---------------------------------------~~  267 (362)
                      .+..++.+...   .-.|+++++|+|+++.+||++.+..                                       .+
T Consensus       128 ~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~F  207 (384)
T 2efj_A          128 IGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTF  207 (384)
T ss_dssp             TTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHH
Confidence            23456665543   3468899999999999999986532                                       12


Q ss_pred             HHHHHhhccCCcEEEEEEEccCCC--Ccch-hhhHHHHHh-hhh------cccccccccccCCHHHHHHHHHHCC-CEEE
Q 018003          268 VAEISRVLRPGGVFVGTTYIVDGP--FNLI-PFSRLLRQV-CFL------DLKIVGFSIPVLGFDDLKRIFRQFQ-LVVN  336 (362)
Q Consensus       268 l~~i~r~LkpgG~li~~~~~~~~~--~~~~-~~~~~~~~~-~~~------~~~~~~~~~~~~s~~~l~~ll~~~G-f~~v  336 (362)
                      |+..++.|+|||+++++.......  .+.. ..+...... ...      ..........+.+.++++.++++.| |++.
T Consensus       208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~  287 (384)
T 2efj_A          208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL  287 (384)
T ss_dssp             HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred             HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence            666689999999999999987653  2110 012221110 000      0011111467789999999999985 6666


Q ss_pred             EEEEe
Q 018003          337 LKLFY  341 (362)
Q Consensus       337 ~~~~~  341 (362)
                      ....+
T Consensus       288 ~le~~  292 (384)
T 2efj_A          288 YLETF  292 (384)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55443

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.94  E-value=1.5e-09  Score=99.17  Aligned_cols=87  Identities=16%  Similarity=0.235  Sum_probs=72.8

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      .+.+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|.|+.+++.|+++++..    ..++.++++|+..++  
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~----g~~v~~v~~d~~~l~~~   90 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFL   90 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEECCHHHHHHH
Confidence            45666777777889999999999999999999865679999999999999999998776    268999999998775  


Q ss_pred             CCC---CcceEEEecc
Q 018003          244 FAS---SSIDAVHAGA  256 (362)
Q Consensus       244 ~~~---~~fD~V~~~~  256 (362)
                      +..   ++||.|++..
T Consensus        91 l~~~g~~~~D~Vl~D~  106 (301)
T 1m6y_A           91 LKTLGIEKVDGILMDL  106 (301)
T ss_dssp             HHHTTCSCEEEEEEEC
T ss_pred             HHhcCCCCCCEEEEcC
Confidence            221   5799999754

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.92  E-value=2.7e-09  Score=100.71  Aligned_cols=111  Identities=14%  Similarity=0.183  Sum_probs=82.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      .....+.+.+... +.+|||+|||+|.++..+++...  +|+|+|+++.+++.|+++++.+   ...++.++.+|+.++.
T Consensus       201 ~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~n---g~~~v~~~~~d~~~~~  274 (369)
T 3bt7_A          201 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAAN---HIDNVQIIRMAAEEFT  274 (369)
T ss_dssp             HHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHT---TCCSEEEECCCSHHHH
T ss_pred             HHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc---CCCceEEEECCHHHHH
Confidence            3345566666543 57899999999999999888654  9999999999999999998876   1358999999986642


Q ss_pred             --CCC--------------CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 --FAS--------------SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 --~~~--------------~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        +..              .+||+|++.--      ...+..++.+.|+++|.++...-
T Consensus       275 ~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPP------r~g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          275 QAMNGVREFNRLQGIDLKSYQCETIFVDPP------RSGLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             HHHSSCCCCTTGGGSCGGGCCEEEEEECCC------TTCCCHHHHHHHTTSSEEEEEES
T ss_pred             HHHhhccccccccccccccCCCCEEEECcC------ccccHHHHHHHHhCCCEEEEEEC
Confidence              121              37999986321      11245677888889999887654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.86  E-value=2.8e-08  Score=97.91  Aligned_cols=131  Identities=18%  Similarity=0.098  Sum_probs=101.2

Q ss_pred             cCCCCCcHHHHHHHHhhcC----CCCCCeEEEEcCccchHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003          156 WGGFPGPEKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQESNFP  228 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  228 (362)
                      .+.+++|....+.+.+.+.    +.++.+|||.+||+|.++..+.+..   ....++|+|+++.+++.|+.++... +..
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~-gi~  274 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH-GVP  274 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT-TCC
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc-CCC
Confidence            4678899999888888876    4568899999999999988887762   2458999999999999999887665 222


Q ss_pred             CCCEEEEEecCCCC--C-CCCCcceEEEeccccc--C-----------------CC---C-HHHHHHHHHhhcc-CCcEE
Q 018003          229 KENFLLVRADISRL--P-FASSSIDAVHAGAAIH--C-----------------WS---S-PSTGVAEISRVLR-PGGVF  281 (362)
Q Consensus       229 ~~~~~~~~~d~~~~--p-~~~~~fD~V~~~~vl~--h-----------------~~---d-~~~~l~~i~r~Lk-pgG~l  281 (362)
                      ..++.+.++|....  | .....||+|+++--..  .                 ++   + -..++..+.+.|| |||++
T Consensus       275 ~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~  354 (542)
T 3lkd_A          275 IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVM  354 (542)
T ss_dssp             GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEE
T ss_pred             cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeE
Confidence            25688999998765  4 3467899999872211  0                 10   0 1258999999999 99999


Q ss_pred             EEEEEc
Q 018003          282 VGTTYI  287 (362)
Q Consensus       282 i~~~~~  287 (362)
                      .+.+|.
T Consensus       355 a~VlP~  360 (542)
T 3lkd_A          355 AIVLPH  360 (542)
T ss_dssp             EEEEET
T ss_pred             EEEecc
Confidence            999886

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.84  E-value=1.4e-08  Score=103.33  Aligned_cols=127  Identities=14%  Similarity=0.030  Sum_probs=91.1

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC----------------------------------------
Q 018003          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG----------------------------------------  199 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------  199 (362)
                      +-.+.....+.......++..|||.+||+|.++..++..+                                        
T Consensus       173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~  252 (703)
T 3v97_A          173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL  252 (703)
T ss_dssp             SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence            3345666777777777778899999999999988777542                                        


Q ss_pred             --CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC--CCCCCcceEEEecccc-cCCC---CHHHHH---
Q 018003          200 --LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL--PFASSSIDAVHAGAAI-HCWS---SPSTGV---  268 (362)
Q Consensus       200 --~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~--p~~~~~fD~V~~~~vl-~h~~---d~~~~l---  268 (362)
                        +...++|+|+++.+++.|++++...  +....+.+.++|+.++  |...++||+|+++--. +.+.   +...+.   
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~a--gv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l  330 (703)
T 3v97_A          253 AEYSSHFYGSDSDARVIQRARTNARLA--GIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLL  330 (703)
T ss_dssp             HHCCCCEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHH
T ss_pred             ccCCccEEEEECCHHHHHHHHHHHHHc--CCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHH
Confidence              1247999999999999999998876  2234599999999876  3334489999998432 1222   223334   


Q ss_pred             HHHHhhccCCcEEEEEEEcc
Q 018003          269 AEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       269 ~~i~r~LkpgG~li~~~~~~  288 (362)
                      .++.+.+.|||.+++.+++.
T Consensus       331 ~~~lk~~~~g~~~~ilt~~~  350 (703)
T 3v97_A          331 GRIMKNQFGGWNLSLFSASP  350 (703)
T ss_dssp             HHHHHHHCTTCEEEEEESCH
T ss_pred             HHHHHhhCCCCeEEEEeCCH
Confidence            44445556899999988754

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.83  E-value=7.3e-09  Score=97.94  Aligned_cols=104  Identities=14%  Similarity=0.109  Sum_probs=82.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCC-EEEEEecCCCCC--CCCCcceE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKEN-FLLVRADISRLP--FASSSIDA  251 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~d~~~~p--~~~~~fD~  251 (362)
                      .++.+|||++||+|.++..++.+..+ .+|+++|+++.+++.++++++.+  +...+ +.++.+|+..+.  ...+.||+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N--gl~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN--NIPEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT--TCCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh--CCCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            35789999999999999998886322 48999999999999999999886  22234 999999985432  12457999


Q ss_pred             EEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          252 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       252 V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |++.-    ...+..+++.+.++|+|||+++++.
T Consensus       129 V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          129 VDLDP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             EEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            99865    2334678999999999999888776

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.82  E-value=9.9e-09  Score=92.85  Aligned_cols=77  Identities=14%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+|+|+++.|++.++++.  .     .++.++++|+.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~-----~~v~~i~~D~~  100 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--G-----ELLELHAGDAL  100 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--G-----GGEEEEESCGG
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--C-----CCcEEEECChh
Confidence            445677888888788899999999999999999998651  23999999999999999873  2     57999999999


Q ss_pred             CCCCCC
Q 018003          241 RLPFAS  246 (362)
Q Consensus       241 ~~p~~~  246 (362)
                      .+++++
T Consensus       101 ~~~~~~  106 (279)
T 3uzu_A          101 TFDFGS  106 (279)
T ss_dssp             GCCGGG
T ss_pred             cCChhH
Confidence            887653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.82  E-value=6.9e-09  Score=97.97  Aligned_cols=105  Identities=17%  Similarity=0.107  Sum_probs=81.8

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC------------CCCCEEEEEecCCCCCC
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF------------PKENFLLVRADISRLPF  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~------------~~~~~~~~~~d~~~~p~  244 (362)
                      ++.+|||+|||+|.++..++...+..+|+++|+++.+++.++++++.+...            ...++.++++|+..+..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            477999999999999999998854568999999999999999998775100            12348999999866431


Q ss_pred             -CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 -ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       ..+.||+|++.-    ...+..++..+.+.|||||+++++.
T Consensus       127 ~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence             135799999532    1245788999999999999887765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.80  E-value=1e-08  Score=101.21  Aligned_cols=129  Identities=18%  Similarity=0.049  Sum_probs=97.2

Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC---------------CCCEEEEEeCCHHHHHHHHHH
Q 018003          156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---------------LFSLVVALDYSENMLKQCYEF  220 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---------------~~~~v~gvD~s~~~~~~a~~~  220 (362)
                      .+.+++|....+.+.+.+.+.++ +|||.+||+|.++..+.+..               ....++|+|+++.+++.|+.+
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N  302 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN  302 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence            46788999999999999987665 99999999999987765421               034899999999999999998


Q ss_pred             HhhcCCCCCCCEEEEEecCCCCC-CCCCcceEEEecccccC-------------------------CCC----HHHHHHH
Q 018003          221 VQQESNFPKENFLLVRADISRLP-FASSSIDAVHAGAAIHC-------------------------WSS----PSTGVAE  270 (362)
Q Consensus       221 ~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD~V~~~~vl~h-------------------------~~d----~~~~l~~  270 (362)
                      +... + ...++.+.++|....+ +....||+|+++--...                         ++.    ...++..
T Consensus       303 l~l~-g-i~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~  380 (544)
T 3khk_A          303 MVIR-G-IDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLH  380 (544)
T ss_dssp             HHHT-T-CCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHH
T ss_pred             HHHh-C-CCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHH
Confidence            7665 1 1223444778875544 45678999999743321                         110    1268999


Q ss_pred             HHhhccCCcEEEEEEEc
Q 018003          271 ISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       271 i~r~LkpgG~li~~~~~  287 (362)
                      +.+.|||||++.+.+|.
T Consensus       381 ~l~~Lk~gGr~aiVlP~  397 (544)
T 3khk_A          381 MLYHLAPTGSMALLLAN  397 (544)
T ss_dssp             HHHTEEEEEEEEEEEET
T ss_pred             HHHHhccCceEEEEecc
Confidence            99999999999999886

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.79  E-value=1.2e-08  Score=95.13  Aligned_cols=159  Identities=10%  Similarity=0.056  Sum_probs=103.2

Q ss_pred             CCeEEEEcCccchHHHHHHHh----------------CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe---c
Q 018003          178 GGNIIDASCGSGLFSRIFAKS----------------GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---D  238 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d  238 (362)
                      ..+|+|+||++|.++..+...                .|..+|+..|+..+.....-+.+....  ...+..++.+   .
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~--~~~~~~f~~gvpgS  129 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN--DVDGVCFINGVPGS  129 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC--SCTTCEEEEEEESC
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc--ccCCCEEEEecchh
Confidence            467999999999876554432                244689999998888777776554310  0012344444   4


Q ss_pred             CCCCCCCCCcceEEEecccccCCCCHH---------------------------------HHHHHHHhhccCCcEEEEEE
Q 018003          239 ISRLPFASSSIDAVHAGAAIHCWSSPS---------------------------------TGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~vl~h~~d~~---------------------------------~~l~~i~r~LkpgG~li~~~  285 (362)
                      +..-.|+++++|+|+++.+||++.+..                                 .+|+..++.|+|||+++++.
T Consensus       130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~  209 (359)
T 1m6e_X          130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence            444678899999999999999986422                                 34888899999999999999


Q ss_pred             EccCCCCc-------chhhhHHHHH-hhhhc------ccccccccccCCHHHHHHHHHHCCC-EEEEE
Q 018003          286 YIVDGPFN-------LIPFSRLLRQ-VCFLD------LKIVGFSIPVLGFDDLKRIFRQFQL-VVNLK  338 (362)
Q Consensus       286 ~~~~~~~~-------~~~~~~~~~~-~~~~~------~~~~~~~~~~~s~~~l~~ll~~~Gf-~~v~~  338 (362)
                      .......+       ....+..... .....      .........+.+.++++.++++.|. ++...
T Consensus       210 ~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~  277 (359)
T 1m6e_X          210 LGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             EECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             ecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEE
Confidence            87754321       1111221111 11100      0111114677899999999999966 44443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.78  E-value=4e-08  Score=87.41  Aligned_cols=76  Identities=16%  Similarity=0.369  Sum_probs=64.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+ ..+++|+|+++.+++.++++  .     ..++.++++|+..+
T Consensus        17 ~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~--~-----~~~v~~i~~D~~~~   88 (249)
T 3ftd_A           17 EGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI--G-----DERLEVINEDASKF   88 (249)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS--C-----CTTEEEECSCTTTC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc--c-----CCCeEEEEcchhhC
Confidence            4456778888887788999999999999999999884 35999999999999999875  1     35899999999998


Q ss_pred             CCCC
Q 018003          243 PFAS  246 (362)
Q Consensus       243 p~~~  246 (362)
                      ++++
T Consensus        89 ~~~~   92 (249)
T 3ftd_A           89 PFCS   92 (249)
T ss_dssp             CGGG
T ss_pred             ChhH
Confidence            8764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.76  E-value=6.6e-09  Score=93.02  Aligned_cols=87  Identities=16%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH-------HHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-------NMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~-------~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ...+...++.+|||+|||+|.++..++..+.  +|+|+|+++       .+++.|+++++..  +...++.++++|+..+
T Consensus        76 ~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~--~~~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           76 AKAVNHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQ--DTAARINLHFGNAAEQ  151 (258)
T ss_dssp             HHHTTGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHH--HHHTTEEEEESCHHHH
T ss_pred             HHHhCcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhh--CCccCeEEEECCHHHH
Confidence            3333444578999999999999999999764  999999999       9999998766543  0123599999998764


Q ss_pred             -C-CCC--CcceEEEecccccC
Q 018003          243 -P-FAS--SSIDAVHAGAAIHC  260 (362)
Q Consensus       243 -p-~~~--~~fD~V~~~~vl~h  260 (362)
                       + +++  ++||+|++.-.+.|
T Consensus       152 l~~~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          152 MPALVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHCCCSEEEECCCC--
T ss_pred             HHhhhccCCCccEEEECCCCCC
Confidence             3 344  68999999776655

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.72  E-value=8.5e-09  Score=91.95  Aligned_cols=87  Identities=7%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ...+.+.+.+...++.+|||||||+|.++. +.+ +...+|+|+|+++.|++.+++++...     .++.++++|+..++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~-----~~v~~i~~D~~~~~   80 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG-----PKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG-----GGEEEECSCGGGCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC-----CceEEEECchhhCC
Confidence            345667777777778899999999999999 654 54122999999999999999875432     58999999998887


Q ss_pred             CCC-----CcceEEEeccc
Q 018003          244 FAS-----SSIDAVHAGAA  257 (362)
Q Consensus       244 ~~~-----~~fD~V~~~~v  257 (362)
                      +++     +..|.|+++--
T Consensus        81 ~~~~~~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           81 FGELAEKMGQPLRVFGNLP   99 (252)
T ss_dssp             HHHHHHHHTSCEEEEEECC
T ss_pred             HHHhhcccCCceEEEECCC
Confidence            543     13466766543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.70  E-value=5.7e-08  Score=96.69  Aligned_cols=100  Identities=14%  Similarity=0.054  Sum_probs=74.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      +..|||+|||+|.+.....+.+    ...+|+++|.++ ++..+++....+  +...+|+++.+|++++..+ +++|+|+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N--~~~dkVtVI~gd~eev~LP-EKVDIIV  433 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFE--EWGSQVTVVSSDMREWVAP-EKADIIV  433 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHH--TTGGGEEEEESCTTTCCCS-SCEEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhc--cCCCeEEEEeCcceeccCC-cccCEEE
Confidence            4579999999999855444432    223689999997 677787777665  4567899999999998765 5799999


Q ss_pred             eccc---ccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          254 AGAA---IHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       254 ~~~v---l~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      +-..   +-+-..| ..|....|.|||||+++
T Consensus       434 SEwMG~fLl~E~ml-evL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          434 SELLGSFADNELSP-ECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCCCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred             EEcCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence            8433   1111234 67888889999999876

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.70  E-value=3.5e-08  Score=88.12  Aligned_cols=133  Identities=14%  Similarity=0.102  Sum_probs=87.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-------CCC-----CEEEEEeCCH---HHHH-----------HHHHHHhhcC----
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKS-------GLF-----SLVVALDYSE---NMLK-----------QCYEFVQQES----  225 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~-------~~~-----~~v~gvD~s~---~~~~-----------~a~~~~~~~~----  225 (362)
                      .++.+|||+|+|+|..+..+.+.       .+.     .+++++|..+   +++.           .|++.++...    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34579999999999988776543       453     4899999876   4443           5555554310    


Q ss_pred             -------CCCCCCEEEEEecCCC-CCCCC----CcceEEEecc-cccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCC
Q 018003          226 -------NFPKENFLLVRADISR-LPFAS----SSIDAVHAGA-AIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDG  290 (362)
Q Consensus       226 -------~~~~~~~~~~~~d~~~-~p~~~----~~fD~V~~~~-vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~  290 (362)
                             ..+..++.++.+|+.+ ++..+    +.||+|+... .-..-++  -..+++++.++|||||+|+.  +..  
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa--  214 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS--  214 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC--
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC--
Confidence                   0113567899999865 44222    2799999843 2111112  24789999999999999883  211  


Q ss_pred             CCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          291 PFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                                                    ...+++.|.++||++.+...++
T Consensus       215 ------------------------------a~~vrr~L~~aGF~v~~~~g~~  236 (257)
T 2qy6_A          215 ------------------------------AGFVRRGLQEAGFTMQKRKGFG  236 (257)
T ss_dssp             ------------------------------BHHHHHHHHHHTEEEEEECCST
T ss_pred             ------------------------------CHHHHHHHHHCCCEEEeCCCCC
Confidence                                          1247788899999987655444

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.66  E-value=4.1e-08  Score=87.10  Aligned_cols=115  Identities=16%  Similarity=0.117  Sum_probs=76.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.....++.+|||+|||+|.++..+++..+...+.|+|+..++....... ..    ...++..+..+++...+..
T Consensus        64 ~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~  138 (277)
T 3evf_A           64 RWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QS----LGWNIITFKDKTDIHRLEP  138 (277)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CB----TTGGGEEEECSCCTTTSCC
T ss_pred             HHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-Cc----CCCCeEEEeccceehhcCC
Confidence            334444445678899999999999999888764444788888875431000000 00    0114556677766666778


Q ss_pred             CcceEEEecccccCCCCHH-------HHHHHHHhhccCC-cEEEEEEEc
Q 018003          247 SSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPG-GVFVGTTYI  287 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~-------~~l~~i~r~Lkpg-G~li~~~~~  287 (362)
                      +.||+|++..+.+ .....       .+|+.+.++|||| |.|++..+.
T Consensus       139 ~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          139 VKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             CCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            8999999977554 32221       3468889999999 999998765

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.63  E-value=3.4e-07  Score=82.70  Aligned_cols=110  Identities=16%  Similarity=0.292  Sum_probs=85.1

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC--CCCCCCEEEEEecCCCC-CCCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~-p~~~~~fD~V~  253 (362)
                      ..++||-||.|.|..++.+.+..+..+++.+|+++..++.|++.+....  ....++++++.+|.... .-..++||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            3679999999999999999987666799999999999999999874320  11257999999998764 34467899999


Q ss_pred             ecccc-----cCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAI-----HCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl-----~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .-..=     .++ --..+++.+++.|+|||+++.....
T Consensus       163 ~D~~dp~~~~~~L-~t~eFy~~~~~~L~p~Gv~v~q~~s  200 (294)
T 3o4f_A          163 SDCTDPIGPGESL-FTSAFYEGCKRCLNPGGIFVAQNGV  200 (294)
T ss_dssp             ESCCCCCCTTCCS-SCCHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EeCCCcCCCchhh-cCHHHHHHHHHHhCCCCEEEEecCC
Confidence            75321     111 0137899999999999999986544

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.62  E-value=6.4e-07  Score=76.58  Aligned_cols=98  Identities=11%  Similarity=0.025  Sum_probs=73.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC--CCCEEEEEecCCCC------------
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KENFLLVRADISRL------------  242 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~d~~~~------------  242 (362)
                      +..+|||+|||  .-+..+++. ++++|+.+|.+++..+.|++.+++.  +.  ..++.++.+|+...            
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~--g~~~~~~I~~~~gda~~~~~wg~p~~~~~~  104 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAAN--PPAEGTEVNIVWTDIGPTGDWGHPVSDAKW  104 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHS--CCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred             CCCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc--CCCCCCceEEEEeCchhhhcccccccchhh
Confidence            36799999985  566666664 3579999999999999999999886  22  45899999996532            


Q ss_pred             ---C--------C-CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          243 ---P--------F-ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       243 ---p--------~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                         +        . ..++||+|+.-.-     .....+..+.+.|+|||++++-
T Consensus       105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A          105 RSYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             GGTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEET
T ss_pred             hhHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEe
Confidence               1        1 2368999998663     2246677788999999999654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.59  E-value=4.3e-08  Score=87.49  Aligned_cols=109  Identities=16%  Similarity=0.075  Sum_probs=73.3

Q ss_pred             HHHhhcCCCCC--CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC---CC---CCCCEEEEEecC
Q 018003          168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---NF---PKENFLLVRADI  239 (362)
Q Consensus       168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~---~~---~~~~~~~~~~d~  239 (362)
                      .+.+.+...++  .+|||+|||+|..+..++..+.  +|+++|.++.+.+.+++.++...   ..   ...+++++++|.
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            45555655556  8999999999999999999865  89999999988777666543210   00   014699999998


Q ss_pred             CC-CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCc
Q 018003          240 SR-LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG  279 (362)
Q Consensus       240 ~~-~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG  279 (362)
                      .. ++...+.||+|++.-...+ .....++++..++|++.+
T Consensus       155 ~~~L~~~~~~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDITPRPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred             HHHHHhCcccCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence            65 3322246999999877765 333355666666776644

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.56  E-value=6e-07  Score=90.73  Aligned_cols=133  Identities=13%  Similarity=0.015  Sum_probs=90.9

Q ss_pred             ccCCCCCcHHHHHHHHhh----cCC--CCCCeEEEEcCccchHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHhhcC
Q 018003          155 VWGGFPGPEKEFELMKGY----LKP--VLGGNIIDASCGSGLFSRIFAKSGL---FSLVVALDYSENMLKQCYEFVQQES  225 (362)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~----l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~  225 (362)
                      ..+.++.|......+...    +..  .++.+|||.|||+|.++..+++...   ..+++|+|+++.+++.|+.++....
T Consensus       293 k~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~l  372 (878)
T 3s1s_A          293 HEGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLF  372 (878)
T ss_dssp             CCBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTS
T ss_pred             cCceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence            346678888887777766    332  3578999999999999999887653   2479999999999999943322110


Q ss_pred             C---CCCCCEEEEEecCCCC-CCCCCcceEEEecccccC-CC---------------------------C-HHHHHHHHH
Q 018003          226 N---FPKENFLLVRADISRL-PFASSSIDAVHAGAAIHC-WS---------------------------S-PSTGVAEIS  272 (362)
Q Consensus       226 ~---~~~~~~~~~~~d~~~~-p~~~~~fD~V~~~~vl~h-~~---------------------------d-~~~~l~~i~  272 (362)
                      +   .......+...|+... +...+.||+|+++--.-. ..                           + ...+++.+.
T Consensus       373 N~LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al  452 (878)
T 3s1s_A          373 PQLVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT  452 (878)
T ss_dssp             TTTCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred             hhhhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence            0   0112234555566543 234578999999744311 11                           1 224688899


Q ss_pred             hhccCCcEEEEEEEc
Q 018003          273 RVLRPGGVFVGTTYI  287 (362)
Q Consensus       273 r~LkpgG~li~~~~~  287 (362)
                      +.|+|||++.+.+|.
T Consensus       453 ~lLKpGGrLAfIlP~  467 (878)
T 3s1s_A          453 ELVQDGTVISAIMPK  467 (878)
T ss_dssp             HHSCTTCEEEEEEET
T ss_pred             HhcCCCcEEEEEECh
Confidence            999999999999986

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.54  E-value=2.2e-07  Score=92.43  Aligned_cols=101  Identities=13%  Similarity=0.114  Sum_probs=72.3

Q ss_pred             CCeEEEEcCccchHHHHHHH----hC---------CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          178 GGNIIDASCGSGLFSRIFAK----SG---------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~----~~---------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      +..|||||||+|.++....+    .+         ...+|+++|.++.+....+.+...   +...++.++.+|++++..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N---g~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR---TWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH---TTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc---CCCCeEEEEeCchhhccc
Confidence            45899999999999643222    22         224899999999777655554432   235679999999998866


Q ss_pred             C-----CCcceEEEecccccCCCC---HHHHHHHHHhhccCCcEEE
Q 018003          245 A-----SSSIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       245 ~-----~~~fD~V~~~~vl~h~~d---~~~~l~~i~r~LkpgG~li  282 (362)
                      +     .+++|+|++-.. ..+.+   -...|..+.+.|||||+++
T Consensus       487 p~~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          487 IAKDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HHHHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             ccccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence            3     578999998554 22222   2357888889999999876

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.50  E-value=1.9e-07  Score=88.50  Aligned_cols=76  Identities=11%  Similarity=0.125  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CC-CCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PF-ASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~-~~~~fD~V~~  254 (362)
                      ++.+|||+|||+|..+..+++.+.  +|+|+|+|+.+++.|+++++...++ ..++.++++|+.+. +. .+++||+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~~~~g-l~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPLLLNE-GKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHSCT-TCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHHhccC-CCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            378999999999999999988765  9999999999999999998754101 26799999999874 32 2357999998


Q ss_pred             c
Q 018003          255 G  255 (362)
Q Consensus       255 ~  255 (362)
                      .
T Consensus       170 D  170 (410)
T 3ll7_A          170 D  170 (410)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=98.43  E-value=1.2e-07  Score=65.39  Aligned_cols=48  Identities=19%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             cccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCCC
Q 018003           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG  122 (362)
Q Consensus        66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~~  122 (362)
                      .+.+++|+||.|+++|....         ..+.+.|+.|+..|++++|++.++.++.
T Consensus         5 ~~LLeiL~CP~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGIPvmL~~Ea   52 (67)
T 2jny_A            5 PQLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDEA   52 (67)
T ss_dssp             GGGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred             HHHHHHhCCCCCCCcCeEeC---------CCCEEEcCCCCccccCCCCEeeeChhHh
Confidence            45789999999999998754         2478999999999999999999988643

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=98.41  E-value=1.2e-07  Score=65.71  Aligned_cols=46  Identities=17%  Similarity=0.183  Sum_probs=39.7

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.+++|+||.|+++|....         ..+.+.|+.|+..|++++|++.++..+
T Consensus         4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2jr6_A            4 KFLDILVCPVTKGRLEYHQ---------DKQELWSRQAKLAYPIKDGIPYMLENE   49 (68)
T ss_dssp             SSSCCCBCSSSCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCTTT
T ss_pred             HHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence            5688999999999998754         247899999999999999999998763

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.40  E-value=1.5e-07  Score=83.60  Aligned_cols=114  Identities=14%  Similarity=0.044  Sum_probs=74.3

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+.+.....++.+|||+|||+|.++..+++..+...++|+|++..+...+... ..    ...++.....+.....+..+
T Consensus        81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~----~g~~ii~~~~~~dv~~l~~~  155 (282)
T 3gcz_A           81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TT----LGWNLIRFKDKTDVFNMEVI  155 (282)
T ss_dssp             HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CB----TTGGGEEEECSCCGGGSCCC
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-cc----CCCceEEeeCCcchhhcCCC
Confidence            33333355678899999999999999988765555789999986532221100 00    01233344433333344568


Q ss_pred             cceEEEecccccCCCCHH-------HHHHHHHhhccCC--cEEEEEEEc
Q 018003          248 SIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPG--GVFVGTTYI  287 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~-------~~l~~i~r~Lkpg--G~li~~~~~  287 (362)
                      .+|+|++..+.. ...+.       .+|.-+.++|+||  |.|++-.+.
T Consensus       156 ~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          156 PGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             CcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            899999987655 33321       3566777899999  999998776

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.39  E-value=3.9e-06  Score=77.90  Aligned_cols=88  Identities=17%  Similarity=0.178  Sum_probs=70.4

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ..+|.++||+||++|.++..+.+++-  .|++||+.+ |......         .+++.++++|......+.+.||+|+|
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~-l~~~l~~---------~~~V~~~~~d~~~~~~~~~~~D~vvs  276 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGP-MAQSLMD---------TGQVTWLREDGFKFRPTRSNISWMVC  276 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSC-CCHHHHT---------TTCEEEECSCTTTCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhh-cChhhcc---------CCCeEEEeCccccccCCCCCcCEEEE
Confidence            35699999999999999999999875  999999875 2222222         47899999999888767788999999


Q ss_pred             cccccCCCCHHHHHHHHHhhccCC
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPG  278 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~Lkpg  278 (362)
                      -.+    .+|...+.-+.+.|..|
T Consensus       277 Dm~----~~p~~~~~l~~~wl~~~  296 (375)
T 4auk_A          277 DMV----EKPAKVAALMAQWLVNG  296 (375)
T ss_dssp             CCS----SCHHHHHHHHHHHHHTT
T ss_pred             cCC----CChHHhHHHHHHHHhcc
Confidence            665    56777777777777766

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=98.38  E-value=1.3e-07  Score=65.93  Aligned_cols=46  Identities=24%  Similarity=0.389  Sum_probs=39.9

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.+.+|+||.|+++|....         ..+.+.|+.|+..|++.+|++.++.++
T Consensus         4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (70)
T 2js4_A            4 RLLDILVCPVCKGRLEFQR---------AQAELVCNADRLAFPVRDGVPIMLEAE   49 (70)
T ss_dssp             CCCCCCBCTTTCCBEEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HHhhheECCCCCCcCEEeC---------CCCEEEcCCCCceecCCCCeeeeChhh
Confidence            4688999999999998754         247899999999999999999998863

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=98.36  E-value=1.1e-07  Score=65.82  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=39.4

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.+++|+||.|+++|....         ..+.+.|+.|+..|++++|++.++..+
T Consensus         4 ~LL~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2hf1_A            4 KFLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE   49 (68)
T ss_dssp             CCEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HHhhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence            4578899999999998754         247899999999999999999998763

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.35  E-value=1.2e-06  Score=81.85  Aligned_cols=122  Identities=15%  Similarity=0.066  Sum_probs=91.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC---CCCCCEEEEEecCCCCC-
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---FPKENFLLVRADISRLP-  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---~~~~~~~~~~~d~~~~p-  243 (362)
                      .....+.+.+|.+|||+.+|.|.-+..++..+....++++|+++..++..++++++..-   ....++.+...|...++ 
T Consensus       139 l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~  218 (359)
T 4fzv_A          139 LPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGE  218 (359)
T ss_dssp             HHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHH
T ss_pred             HHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcch
Confidence            34456788899999999999999999998887766899999999999999988876510   01257888888887654 


Q ss_pred             CCCCcceEEEec----c----cccCCCC------H----------HHHHHHHHhhccCCcEEEEEEEccC
Q 018003          244 FASSSIDAVHAG----A----AIHCWSS------P----------STGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       244 ~~~~~fD~V~~~----~----vl~h~~d------~----------~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ...+.||.|++-    .    ++..-++      +          ..+|....++|||||+|+.+|=...
T Consensus       219 ~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~  288 (359)
T 4fzv_A          219 LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS  288 (359)
T ss_dssp             HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence            345789999953    2    1211111      1          2578889999999999998875543

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=98.35  E-value=1.4e-07  Score=65.47  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.+++|+||.|+++|....         ..+.+.|+.|+..|++.+|++.++..+
T Consensus         4 ~LLeiL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~e   49 (69)
T 2pk7_A            4 KLLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE   49 (69)
T ss_dssp             CGGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HHHhheeCCCCCCcCeEeC---------CCCEEEcCCCCcEecCcCCeeeeChhh
Confidence            4678899999999998654         247899999999999999999998763

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.30  E-value=1.2e-05  Score=79.23  Aligned_cols=129  Identities=17%  Similarity=0.164  Sum_probs=96.4

Q ss_pred             cCCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh----C---------CCCEEEEEeCCHHHHHHHHHHHh
Q 018003          156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----G---------LFSLVVALDYSENMLKQCYEFVQ  222 (362)
Q Consensus       156 ~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~---------~~~~v~gvD~s~~~~~~a~~~~~  222 (362)
                      .+.|++|....+.+.+.+.+.++.+|+|-+||+|.|+..+.+.    .         ....++|+|+++.+...|+-++-
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            3668999999999999999999999999999999998776542    1         12369999999999999998766


Q ss_pred             hcCCCCCCCEEEEEecCCCCCCC----CCcceEEEecccccC---------CC------CH-HHHHHHHHhhcc------
Q 018003          223 QESNFPKENFLLVRADISRLPFA----SSSIDAVHAGAAIHC---------WS------SP-STGVAEISRVLR------  276 (362)
Q Consensus       223 ~~~~~~~~~~~~~~~d~~~~p~~----~~~fD~V~~~~vl~h---------~~------d~-~~~l~~i~r~Lk------  276 (362)
                      -+ +  .....+..+|....|..    ...||+|+++--+.-         ++      +. ..++..+.+.||      
T Consensus       276 lh-g--~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l  352 (530)
T 3ufb_A          276 LH-G--LEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGS  352 (530)
T ss_dssp             HH-T--CSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSS
T ss_pred             hc-C--CccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhcc
Confidence            55 1  23446677887665432    347999999854421         11      11 256788888886      


Q ss_pred             -CCcEEEEEEEc
Q 018003          277 -PGGVFVGTTYI  287 (362)
Q Consensus       277 -pgG~li~~~~~  287 (362)
                       |||++.+..|.
T Consensus       353 ~~gGr~avVlP~  364 (530)
T 3ufb_A          353 DNGGRAAVVVPN  364 (530)
T ss_dssp             SSCCEEEEEEEH
T ss_pred             CCCceEEEEecc
Confidence             79999999885

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=98.22  E-value=6.2e-07  Score=59.63  Aligned_cols=45  Identities=24%  Similarity=0.424  Sum_probs=39.0

Q ss_pred             cccCCeeeCCCCCCCcccccCCCCccccccCCceecC--ccCcccccCCceeeeecCC
Q 018003           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~--~C~~~~~~~~g~~~~~~~~  121 (362)
                      .+.+++|+||.|+++|....           +.+.|+  .|+..|++++|++.++.++
T Consensus         5 ~~lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e   51 (56)
T 2kpi_A            5 AGLLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE   51 (56)
T ss_dssp             CSCTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred             HHHHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence            35689999999999987654           789999  9999999999999888754

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.18  E-value=4.4e-06  Score=74.58  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=67.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      .+.+.+.+...+++.+||.+||.|..+..++++  +++|+|+|.++.+++.|++ +..      .++.++++++..++  
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f~~l~~~   81 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNFRHLKRH   81 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCGGGHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCcchHHHH
Confidence            456677777788999999999999999999998  4599999999999999998 532      48999999998764  


Q ss_pred             ---CCCCcceEEEec
Q 018003          244 ---FASSSIDAVHAG  255 (362)
Q Consensus       244 ---~~~~~fD~V~~~  255 (362)
                         ...+++|.|++.
T Consensus        82 L~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           82 LAALGVERVDGILAD   96 (285)
T ss_dssp             HHHTTCSCEEEEEEE
T ss_pred             HHHcCCCCcCEEEeC
Confidence               122579999974

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.06  E-value=1.1e-05  Score=72.65  Aligned_cols=107  Identities=9%  Similarity=0.076  Sum_probs=77.7

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC-----CCCEEEEEeCCHH--------------------------HHHHHHHHHhhc
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSEN--------------------------MLKQCYEFVQQE  224 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~gvD~s~~--------------------------~~~~a~~~~~~~  224 (362)
                      ...+.|||+|+..|..+..++...     ++.+++++|..+.                          .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            345799999999999887776531     3568999996421                          366788888776


Q ss_pred             CCCCCCCEEEEEecCCC-CC-CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          225 SNFPKENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       225 ~~~~~~~~~~~~~d~~~-~p-~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       +....++.++.+|+.+ +| ++.++||+|+.-.-.+  ..-...|+.+.+.|+|||++++-.
T Consensus       185 -gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD  244 (282)
T 2wk1_A          185 -DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDD  244 (282)
T ss_dssp             -TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred             -CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcC
Confidence             2223789999999854 33 3457899999865321  123478999999999999988754

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=98.06  E-value=1.7e-06  Score=63.83  Aligned_cols=54  Identities=11%  Similarity=0.094  Sum_probs=42.0

Q ss_pred             ccCCeeeCCCCCCCcccccC------------------CCCccccccCCceecCccCcccccCCceeeeecC
Q 018003           67 TSKNVLACPICYKPLTWIGD------------------SSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~------------------~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~  120 (362)
                      +.+.+|+||.|+++|.....                  .....+.+..+.+.|+.|+..|++++|++.++..
T Consensus         4 ~LLdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~   75 (97)
T 2k5r_A            4 KLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPE   75 (97)
T ss_dssp             TTCSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred             HHhhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChH
Confidence            46889999999998876432                  1112344556789999999999999999999876

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.04  E-value=6.7e-06  Score=73.48  Aligned_cols=106  Identities=14%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||+||++|.++..+.+......|+|+|+...+...... ...    ...++.....+.....+..+.+|+|++.
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~----~~~~iv~~~~~~di~~l~~~~~DlVlsD  154 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQT----LGWNIVKFKDKSNVFTMPTEPSDTLLCD  154 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCB----TTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccc----cCCceEEeecCceeeecCCCCcCEEeec
Confidence            46889999999999999999986544578999997542110000 000    0112233333322223446789999997


Q ss_pred             ccccCCCCH-------HHHHHHHHhhccCC-cEEEEEEEc
Q 018003          256 AAIHCWSSP-------STGVAEISRVLRPG-GVFVGTTYI  287 (362)
Q Consensus       256 ~vl~h~~d~-------~~~l~~i~r~Lkpg-G~li~~~~~  287 (362)
                      ..-. ...+       ..+|.-+.++|+|| |.|++-.+.
T Consensus       155 ~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          155 IGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             CcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            6544 3333       24577778999999 999998776

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.99  E-value=1.1e-05  Score=75.06  Aligned_cols=108  Identities=13%  Similarity=0.194  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC-----CCCCCEEEEEecCCCC----CCCCC
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----FPKENFLLVRADISRL----PFASS  247 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~~~~~~~~~d~~~~----p~~~~  247 (362)
                      ++++||-||.|.|..++.+.+.. ..+++.+|+++..++.|++.+....+     ...++++++.+|....    +-..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLK-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTC-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcC-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            46799999999999999998864 47999999999999999997643200     0124688999997543    11346


Q ss_pred             cceEEEecccccC-CCCH---------HHHHHHHHhhccCCcEEEEEE
Q 018003          248 SIDAVHAGAAIHC-WSSP---------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       248 ~fD~V~~~~vl~h-~~d~---------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +||+|+.--.-.. -.+|         ..+++.+++.|+|||+++...
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~  331 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG  331 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            7999997532111 1122         367889999999999998653

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.93  E-value=2.8e-05  Score=70.84  Aligned_cols=60  Identities=17%  Similarity=0.196  Sum_probs=52.2

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~  224 (362)
                      +...++.+..... .++..|||++||+|..+..+++.|.  +++|+|+++.+++.|+++++..
T Consensus       221 p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          221 PLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            4666777777665 5688999999999999999999876  9999999999999999998775

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.93  E-value=7.1e-05  Score=66.59  Aligned_cols=113  Identities=14%  Similarity=0.089  Sum_probs=76.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHH--HHHHHhhcCCCCCCCEEEEEe-cCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ--CYEFVQQESNFPKENFLLVRA-DISRLP  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~--a~~~~~~~~~~~~~~~~~~~~-d~~~~p  243 (362)
                      ..+.+.....++++|||+||++|.++.+++.......|+|+|+-..-.+.  ..+.      .....+.+..+ |+..++
T Consensus        84 ~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~q------l~w~lV~~~~~~Dv~~l~  157 (321)
T 3lkz_A           84 RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQS------YGWNIVTMKSGVDVFYRP  157 (321)
T ss_dssp             HHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCB------TTGGGEEEECSCCTTSSC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhh------cCCcceEEEeccCHhhCC
Confidence            34444445567889999999999999977776444579999997641100  0000      01134777777 887776


Q ss_pred             CCCCcceEEEecccccCCCCHH-------HHHHHHHhhccCC-cEEEEEEEcc
Q 018003          244 FASSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPG-GVFVGTTYIV  288 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~-------~~l~~i~r~Lkpg-G~li~~~~~~  288 (362)
                      .  ..+|+|+|.-. +--++|.       .+|+-+.+.|++| |-|++-...+
T Consensus       158 ~--~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          158 S--ECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             C--CCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             C--CCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            3  56999999777 7767764       3566667889999 8888876654

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.90  E-value=3.4e-05  Score=61.60  Aligned_cols=96  Identities=13%  Similarity=0.103  Sum_probs=63.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccc-hHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSG-LFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      +.+.+...  ++.+|||||||.| ..+..|++ .+.  .|+++|+++.++                  .+++.|+.+...
T Consensus        27 eYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av------------------~~v~dDiF~P~~   84 (153)
T 2k4m_A           27 VYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHG------------------GIVRDDITSPRM   84 (153)
T ss_dssp             HHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSST------------------TEECCCSSSCCH
T ss_pred             HHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCcccc------------------ceEEccCCCCcc
Confidence            34444433  3679999999999 59999987 665  899999998532                  278889877332


Q ss_pred             CC-CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          245 AS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       245 ~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      .- +.||+|.+..-   -++.+..+.++++..  |.-+++.....+
T Consensus        85 ~~Y~~~DLIYsirP---P~El~~~i~~lA~~v--~adliI~pL~~E  125 (153)
T 2k4m_A           85 EIYRGAALIYSIRP---PAEIHSSLMRVADAV--GARLIIKPLTGE  125 (153)
T ss_dssp             HHHTTEEEEEEESC---CTTTHHHHHHHHHHH--TCEEEEECBTTB
T ss_pred             cccCCcCEEEEcCC---CHHHHHHHHHHHHHc--CCCEEEEcCCCC
Confidence            11 47999977543   123445555665533  556776655443

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.87  E-value=0.00015  Score=62.47  Aligned_cols=115  Identities=17%  Similarity=0.136  Sum_probs=76.1

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~p~~  245 (362)
                      ..+.+.....++++|||+||++|.++.+++.......|+|+|+-..-.+.-+    .....+...+.|..+ |+..++  
T Consensus        68 ~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~----~~~s~gwn~v~fk~gvDv~~~~--  141 (267)
T 3p8z_A           68 QWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPV----PMSTYGWNIVKLMSGKDVFYLP--  141 (267)
T ss_dssp             HHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCC----CCCCTTTTSEEEECSCCGGGCC--
T ss_pred             HHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcc----hhhhcCcCceEEEeccceeecC--
Confidence            3344333556788999999999999998777654458999999763210000    000112367899999 976665  


Q ss_pred             CCcceEEEecccccCCCCHH-------HHHHHHHhhccCCcEEEEEEEccC
Q 018003          246 SSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ...+|.|+|.-. +--++|.       .+|+-+.+.|++ |-+++-.....
T Consensus       142 ~~~~DtllcDIg-eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py  190 (267)
T 3p8z_A          142 PEKCDTLLCDIG-ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY  190 (267)
T ss_dssp             CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred             CccccEEEEecC-CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence            266999998655 3334543       356666789998 78888766543

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.87  E-value=0.00017  Score=66.65  Aligned_cols=161  Identities=11%  Similarity=0.107  Sum_probs=103.4

Q ss_pred             HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC------CC------------CCCC
Q 018003          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NF------------PKEN  231 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~------------~~~~  231 (362)
                      .+++...+...|+.+|||.......+...++...++-+|. |+.++.-++.+....      +.            ...+
T Consensus        90 ~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~  168 (334)
T 1rjd_A           90 LEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGR  168 (334)
T ss_dssp             HHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSS
T ss_pred             HHHHHHCCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCc
Confidence            3344323457899999999999888887655567788887 777777777665530      00            1367


Q ss_pred             EEEEEecCCCCCC---------CCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH
Q 018003          232 FLLVRADISRLPF---------ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL  300 (362)
Q Consensus       232 ~~~~~~d~~~~p~---------~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~  300 (362)
                      ..++.+|+.+...         ......++++-.++.+++..  ..+++.+.+.. |+|.+++.++..... ...++...
T Consensus       169 ~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~-~~~~fg~~  246 (334)
T 1rjd_A          169 YKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ-PNDRFGAI  246 (334)
T ss_dssp             EEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS-TTCCHHHH
T ss_pred             eEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC-CcchHHHH
Confidence            8999999987421         23457889999999998643  36777787776 788887666654311 11122222


Q ss_pred             HHHhhh--hcccccccccccCCHHHHHHHHHHCCCE
Q 018003          301 LRQVCF--LDLKIVGFSIPVLGFDDLKRIFRQFQLV  334 (362)
Q Consensus       301 ~~~~~~--~~~~~~~~~~~~~s~~~l~~ll~~~Gf~  334 (362)
                      ....+.  ......+ -..+.+.++..+.|.++||.
T Consensus       247 m~~~l~~~rg~~l~~-~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          247 MQSNLKESRNLEMPT-LMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHHHHHHHHCCCCTT-TTTTCSHHHHHGGGTTSSEE
T ss_pred             HHHHhhcccCCcccc-cccCCCHHHHHHHHHHCCCC
Confidence            211111  0011122 23567999999999999997

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.84  E-value=4e-05  Score=67.00  Aligned_cols=104  Identities=16%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCE---EEEEe-cCCCCCCCCCcc
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF---LLVRA-DISRLPFASSSI  249 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~-d~~~~p~~~~~f  249 (362)
                      -..++.+|||+||+.|.++..+++.-....|.|.++.... .     +... .....++   .+.++ |+..++  ...+
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P~-~~~~~Gv~~i~~~~G~Df~~~~--~~~~  140 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEPM-LMQSYGWNIVTMKSGVDVFYKP--SEIS  140 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCCC-CCCSTTGGGEEEECSCCGGGSC--CCCC
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCCC-cccCCCceEEEeeccCCccCCC--CCCC
Confidence            4557999999999999999999886211233444443220 0     0000 0000233   44446 987653  4579


Q ss_pred             eEEEecccccCCCCHH-------HHHHHHHhhccCCc-EEEEEEEc
Q 018003          250 DAVHAGAAIHCWSSPS-------TGVAEISRVLRPGG-VFVGTTYI  287 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~-------~~l~~i~r~LkpgG-~li~~~~~  287 (362)
                      |+|+|-..=. -.++.       .+|.-+.++|+||| .|++-.+.
T Consensus       141 DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          141 DTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             SEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             CEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            9999866432 22221       25666678999999 99988776

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.77  E-value=2.8e-06  Score=97.26  Aligned_cols=149  Identities=14%  Similarity=0.086  Sum_probs=70.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhC---C--CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCCCCcc
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSG---L--FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSI  249 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~---~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~~~~f  249 (362)
                      .+..+|||||.|+|..+..+.+..   +  ..+++..|+|+...+.++++++..      ++..-.-|.... ++..++|
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~------di~~~~~d~~~~~~~~~~~y 1312 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL------HVTQGQWDPANPAPGSLGKA 1312 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH------TEEEECCCSSCCCC-----C
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc------ccccccccccccccCCCCce
Confidence            356799999999998765544431   1  247899999998887787766543      222211233332 3445679


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHH
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFR  329 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~  329 (362)
                      |+|++..++|-.++....|++++++|||||.+++.......      ++.....++..  .... ...+.+.++|.++|.
T Consensus      1313 dlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~------~~g~~~~~~~~--~~r~-~~~~~~~~~w~~~l~ 1383 (2512)
T 2vz8_A         1313 DLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGH------PLGEMVGFLTS--PEQG-GRHLLSQDQWESLFA 1383 (2512)
T ss_dssp             CEEEEECC--------------------CCEEEEEEC-----------------------------------CTTTTSST
T ss_pred             eEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccc------ccccccccccc--cccc-CCcccCHHHHHHHHH
Confidence            99999999998889999999999999999999887643211      01111111100  0001 234567778889999


Q ss_pred             HCCCEEEEEE
Q 018003          330 QFQLVVNLKL  339 (362)
Q Consensus       330 ~~Gf~~v~~~  339 (362)
                      ++||..+...
T Consensus      1384 ~~gf~~~~~~ 1393 (2512)
T 2vz8_A         1384 GASLHLVALK 1393 (2512)
T ss_dssp             TTTEEEEEEE
T ss_pred             hCCCceeeec
Confidence            9999876543

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.52  E-value=0.00011  Score=67.01  Aligned_cols=83  Identities=20%  Similarity=0.262  Sum_probs=67.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-  243 (362)
                      ++.+.+.+...+++.++|..||.|..+..+++. ++.++|+|+|.++.+++.++ ++  .    ..++.++++++..+. 
T Consensus        46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~----~~Rv~lv~~nF~~l~~  118 (347)
T 3tka_A           46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D----DPRFSIIHGPFSALGE  118 (347)
T ss_dssp             THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C----CTTEEEEESCGGGHHH
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c----CCcEEEEeCCHHHHHH
Confidence            456777788888999999999999999999887 57789999999999999984 43  1    468999999987763 


Q ss_pred             -CC----CCcceEEEec
Q 018003          244 -FA----SSSIDAVHAG  255 (362)
Q Consensus       244 -~~----~~~fD~V~~~  255 (362)
                       +.    .+++|.|++.
T Consensus       119 ~L~~~g~~~~vDgILfD  135 (347)
T 3tka_A          119 YVAERDLIGKIDGILLD  135 (347)
T ss_dssp             HHHHTTCTTCEEEEEEE
T ss_pred             HHHhcCCCCcccEEEEC
Confidence             11    1369999976

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.45  E-value=0.0012  Score=59.69  Aligned_cols=140  Identities=11%  Similarity=0.119  Sum_probs=82.8

Q ss_pred             CCeEEEEcCccchHHHHHH----HhCCCCE--EEEEeCCH--------H-HHHHHHHHHhhcC--CCCCCCEEEEEecCC
Q 018003          178 GGNIIDASCGSGLFSRIFA----KSGLFSL--VVALDYSE--------N-MLKQCYEFVQQES--NFPKENFLLVRADIS  240 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~----~~~~~~~--v~gvD~s~--------~-~~~~a~~~~~~~~--~~~~~~~~~~~~d~~  240 (362)
                      .-+|||+|-|+|.+.....    +.++..+  ++.+|..+        . ..+..+.......  ....-.+.++.+|+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            4589999999998754322    3355444  56666421        1 1112222222110  011224567788874


Q ss_pred             C-CC-CCCCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccc
Q 018003          241 R-LP-FASSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGF  314 (362)
Q Consensus       241 ~-~p-~~~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (362)
                      . ++ +.+..||+|+.-. +---.+|    ..+++.++++++|||+|+  |+.                           
T Consensus       177 ~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYt---------------------------  226 (308)
T 3vyw_A          177 KRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWV--SYS---------------------------  226 (308)
T ss_dssp             HHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESC---------------------------
T ss_pred             HHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEE--EEe---------------------------
Confidence            4 33 3455799999743 2222355    389999999999999887  222                           


Q ss_pred             ccccCCHHHHHHHHHHCCCEEEEEEEecee-EEEEeeCc
Q 018003          315 SIPVLGFDDLKRIFRQFQLVVNLKLFYGHI-QHYIVKIP  352 (362)
Q Consensus       315 ~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~-~~~~~~kp  352 (362)
                           ....+++.|+++||++.+.--+|.- .+..+.++
T Consensus       227 -----aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~~  260 (308)
T 3vyw_A          227 -----SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLK  260 (308)
T ss_dssp             -----CCHHHHHHHHHTTCEEEEEECC---CEEEEEESS
T ss_pred             -----CcHHHHHHHHHCCCEEEecCCCCCCCceeEEecC
Confidence                 1236889999999999887666554 55555554

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.32  E-value=0.00053  Score=63.61  Aligned_cols=74  Identities=14%  Similarity=0.077  Sum_probs=59.1

Q ss_pred             HHHHHHHHhhcCCC------CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE
Q 018003          163 EKEFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  236 (362)
Q Consensus       163 ~~~~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  236 (362)
                      ...++.+.+.+...      ++..|||||.|.|.++..|.+.....+++++|+++.++...++.+ .     ..++.++.
T Consensus        38 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~-----~~~l~ii~  111 (353)
T 1i4w_A           38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E-----GSPLQILK  111 (353)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T-----TSSCEEEC
T ss_pred             HHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c-----CCCEEEEE
Confidence            45567777776654      357899999999999999998732348999999999999988875 2     36899999


Q ss_pred             ecCCCC
Q 018003          237 ADISRL  242 (362)
Q Consensus       237 ~d~~~~  242 (362)
                      +|+..+
T Consensus       112 ~D~l~~  117 (353)
T 1i4w_A          112 RDPYDW  117 (353)
T ss_dssp             SCTTCH
T ss_pred             CCccch
Confidence            999654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.17  E-value=0.002  Score=57.25  Aligned_cols=96  Identities=11%  Similarity=0.035  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcC------ccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          175 PVLGGNIIDASC------GSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       175 ~~~~~~vLDiGc------G~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      ...+.+|||+|+      ..|..  .+.+.++. +.++++|+.+-.              .... .++++|...... .+
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~--------------sda~-~~IqGD~~~~~~-~~  168 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV--------------SDAD-STLIGDCATVHT-AN  168 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB--------------CSSS-EEEESCGGGEEE-SS
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc--------------cCCC-eEEEcccccccc-CC
Confidence            346899999996      56663  44445664 599999998731              0123 459999765432 47


Q ss_pred             cceEEEecccc---cCCC--C------HHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          248 SIDAVHAGAAI---HCWS--S------PSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       248 ~fD~V~~~~vl---~h~~--d------~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +||+|++-..=   -+..  .      -+.++.-+.+.|+|||.|++-.+..
T Consensus       169 k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          169 KWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             CEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             CCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence            89999986431   1111  1      1355666788999999999987654

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.15  E-value=0.0012  Score=58.69  Aligned_cols=61  Identities=18%  Similarity=0.152  Sum_probs=51.2

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~  224 (362)
                      .|...++.+.+... .++..|||..||+|..+..+.+.+.  +++|+|+++.+++.++++++..
T Consensus       197 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~~  257 (260)
T 1g60_A          197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQL  257 (260)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhc
Confidence            34666777776654 5688999999999999999998876  9999999999999999987654

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.15  E-value=0.0084  Score=54.61  Aligned_cols=157  Identities=12%  Similarity=-0.011  Sum_probs=98.7

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---------CCCCcc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------FASSSI  249 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---------~~~~~f  249 (362)
                      ..|+++|||.=.....+.. .....++-+| .+..++..++.+.+.......+..++.+|+.+ .         +.....
T Consensus       104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~P  180 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSAR  180 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSC
T ss_pred             CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCC
Confidence            4799999998776555431 2236899999 59999999998875322235678999999976 2         112234


Q ss_pred             eEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHH-Hhhhhccc----cccccccc-CC-
Q 018003          250 DAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QVCFLDLK----IVGFSIPV-LG-  320 (362)
Q Consensus       250 D~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~-~s-  320 (362)
                      =++++-.+++++++  ...+++.+...+.||+.+++.....+.. .......... ..+. ...    ..-....+ .+ 
T Consensus       181 t~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~~-~~~~~~~~~~~~~~~-~~g~~~~~~l~~~~~~~~~  258 (310)
T 2uyo_A          181 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGD-EWREQMQLRFRRVSD-ALGFEQAVDVQELIYHDEN  258 (310)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCS-HHHHHHHHHHHHHHC------------CCTTCCTT
T ss_pred             EEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCCc-chhHHHHHHHHHHHH-HcCCcCCCCccccccCCCC
Confidence            47888899999975  3478889999889999988876554321 0100111111 1111 000    00002223 25 


Q ss_pred             HHHHHHHHHHCCCEEEEEEEe
Q 018003          321 FDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      .++..+.|.+.||+.+ ....
T Consensus       259 ~~~~~~~f~~~G~~~~-~~~~  278 (310)
T 2uyo_A          259 RAVVADWLNRHGWRAT-AQSA  278 (310)
T ss_dssp             CCCHHHHHTTTTEEEE-EEEH
T ss_pred             hHHHHHHHHHCcCccc-cCCH
Confidence            7889999999999887 4443

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=96.61  E-value=0.17  Score=46.41  Aligned_cols=159  Identities=9%  Similarity=0.089  Sum_probs=96.9

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcC---------------C-----CCCCCEEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES---------------N-----FPKENFLLV  235 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~---------------~-----~~~~~~~~~  235 (362)
                      +...|+-+|||.=.....+...+ +...++=+|. |+.++.=++.+....               .     ....+..++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            35689999999988777776642 3457777887 444444333333200               0     014678899


Q ss_pred             EecCCCCC----------CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHH
Q 018003          236 RADISRLP----------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ  303 (362)
Q Consensus       236 ~~d~~~~p----------~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~  303 (362)
                      .+|+.+..          +.....=++++-.++.+++..  ..+|+.+.+.. |+|.+++.++....    .++.+....
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~----d~fg~~M~~  243 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG----DRFGQIMIE  243 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT----SHHHHHHHH
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC----CHHHHHHHH
Confidence            99997631          333445588888889988533  36777777766 55666666665322    233322222


Q ss_pred             hhh-hcccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          304 VCF-LDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       304 ~~~-~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      .+. ......+ -..|.+.++..+.+.++||..+......
T Consensus       244 ~l~~~g~pl~s-l~~y~t~~~~~~r~~~~Gw~~~~~~d~~  282 (334)
T 3iei_A          244 NLRRRQCDLAG-VETCKSLESQKERLLSNGWETASAVDMM  282 (334)
T ss_dssp             HHHTTTCCCTT-GGGGGCHHHHHHHHHTTTCSEEEEEEHH
T ss_pred             HHHHhCCCCcc-cccCCCHHHHHHHHHHcCCCcceeecHH
Confidence            221 0111222 3466788999999999999887765543

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=96.12  E-value=0.003  Score=40.73  Aligned_cols=32  Identities=19%  Similarity=0.473  Sum_probs=24.5

Q ss_pred             CeeeCCCCCC-CcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.||.|++ ++....         ..+.+.|..||.+|..
T Consensus         4 ~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~~e   36 (50)
T 1pft_A            4 KQKVCPACESAELIYDP---------ERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             SCCSCTTTSCCCEEEET---------TTTEEEESSSCCBCCC
T ss_pred             ccEeCcCCCCcceEEcC---------CCCeEECcccCCcccc
Confidence            3578999998 665543         2368999999998875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.89  E-value=0.062  Score=50.48  Aligned_cols=104  Identities=16%  Similarity=0.158  Sum_probs=70.1

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC------
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP------  243 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p------  243 (362)
                      .....++.+||-+|+|. |.++..+++..-...|+++|.+++.++.+++.          ....+...-.. +.      
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~v~~~  249 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAAL  249 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHc----------CCcEEccCCcchHHHHHHHH
Confidence            45667799999999876 88888888764223799999999999888762          12322211111 10      


Q ss_pred             CCCCcceEEEeccccc---------CCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIH---------CWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~---------h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .....+|+|+-.-.-.         |.+++...+++..++|++||++++..
T Consensus       250 t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             HSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             hCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            1123699998654321         33456678999999999999998653

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.74  E-value=0.041  Score=50.78  Aligned_cols=71  Identities=14%  Similarity=0.137  Sum_probs=54.9

Q ss_pred             CeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---CCCcceEEEe
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAVHA  254 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---~~~~fD~V~~  254 (362)
                      .+++|+-||.|.+...+...|.. ..++++|+++.+++..+.++        ++..++.+|+..+..   +...+|+|+.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~--------~~~~~~~~Di~~~~~~~~~~~~~D~l~~   74 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF--------PHTQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC--------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc--------cccccccCCHHHccHhHcCcCCcCEEEE
Confidence            48999999999999999998731 36899999999999888873        344577889877641   1125899998


Q ss_pred             ccc
Q 018003          255 GAA  257 (362)
Q Consensus       255 ~~v  257 (362)
                      ..-
T Consensus        75 gpP   77 (343)
T 1g55_A           75 SPP   77 (343)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            644

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.67  E-value=0.048  Score=50.72  Aligned_cols=100  Identities=15%  Similarity=0.141  Sum_probs=66.1

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-----CC
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-----PF  244 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-----p~  244 (362)
                      +.....++.+||-+|+|. |.++..+++..-...|+++|.+++.++.+++.        ... .++..+-.++     ..
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~~~  254 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL--------GAT-HVINSKTQDPVAAIKEI  254 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc--------CCC-EEecCCccCHHHHHHHh
Confidence            445667799999999986 88877777753212699999999999888764        111 1222111111     01


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..+.+|+|+-.-.     . ...++...+.|+|||++++..
T Consensus       255 ~~gg~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          255 TDGGVNFALESTG-----S-PEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             TTSCEEEEEECSC-----C-HHHHHHHHHTEEEEEEEEECC
T ss_pred             cCCCCcEEEECCC-----C-HHHHHHHHHHHhcCCEEEEeC
Confidence            1236999985432     2 346888999999999998754

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.64  E-value=0.06  Score=50.59  Aligned_cols=104  Identities=16%  Similarity=0.099  Sum_probs=68.4

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-----
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-----  243 (362)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++.          ....+..+-.+. .     
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~i~~~~~~~~~~~~~~  248 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----------GFETIDLRNSAPLRDQIDQ  248 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----------TCEEEETTSSSCHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----------CCcEEcCCCcchHHHHHHH
Confidence            455667899999999986 88888887753223899999999988887652          123332211111 0     


Q ss_pred             C-CCCcceEEEeccccc---------CCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 F-ASSSIDAVHAGAAIH---------CWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~-~~~~fD~V~~~~vl~---------h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      . ....+|+|+-.-.-.         |. ++...+++..+.|++||++++..
T Consensus       249 ~~~g~g~Dvvid~~g~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          249 ILGKPEVDCGVDAVGFEAHGLGDEANTE-TPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             HHSSSCEEEEEECSCTTCBCSGGGTTSB-CTTHHHHHHHHHEEEEEEEECCS
T ss_pred             HhCCCCCCEEEECCCCcccccccccccc-ccHHHHHHHHHHHhcCCEEEEec
Confidence            0 122699998654322         11 23457899999999999988653

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=95.50  E-value=0.01  Score=52.85  Aligned_cols=105  Identities=9%  Similarity=-0.029  Sum_probs=80.3

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC---CCCCcceEEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP---FASSSIDAVH  253 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p---~~~~~fD~V~  253 (362)
                      +..+||+=+|+|.++..+...+  .+++.+|.++..++..+++++.     ..++.++..|... +.   -+...||+|+
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~-----~~~~~V~~~D~~~~L~~l~~~~~~fdLVf  164 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHF-----NKKVYVNHTDGVSKLNALLPPPEKRGLIF  164 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCT-----TSCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred             CCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCc-----CCcEEEEeCcHHHHHHHhcCCCCCccEEE
Confidence            4578999999999999988855  4999999999999988887654     3679999999643 21   2335699999


Q ss_pred             ecccccCCCCHHHHHHHHHh--hccCCcEEEEEEEccC
Q 018003          254 AGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIVD  289 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r--~LkpgG~li~~~~~~~  289 (362)
                      +---.+.-.+...+++.+.+  .+.|+|++++.-|..+
T Consensus       165 iDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~  202 (283)
T 2oo3_A          165 IDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN  202 (283)
T ss_dssp             ECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred             ECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence            87665543455666766666  5679999999888754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.43  E-value=0.14  Score=46.72  Aligned_cols=90  Identities=14%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             CCeEEEEcCccchHHHHHHHhCC-CCEE-EEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcceEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGL-FSLV-VALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAV  252 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~fD~V  252 (362)
                      ..+++|+-||.|.+...+.+.|. ...+ .++|+++.+.+..+.++..        . ++.+|+..+.   ++...+|++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~--------~-~~~~DI~~~~~~~i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE--------E-VQVKNLDSISIKQIESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC--------C-CBCCCTTTCCHHHHHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC--------C-cccCChhhcCHHHhccCCCCEE
Confidence            45899999999999999999874 2356 7999999998888876422        2 5678888764   222368999


Q ss_pred             EecccccCC-----------CCHH-HHHHHHHh-hcc
Q 018003          253 HAGAAIHCW-----------SSPS-TGVAEISR-VLR  276 (362)
Q Consensus       253 ~~~~vl~h~-----------~d~~-~~l~~i~r-~Lk  276 (362)
                      +...--..+           .|+. .++.++.+ +++
T Consensus        81 ~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~  117 (327)
T 3qv2_A           81 FMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILP  117 (327)
T ss_dssp             EECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGG
T ss_pred             EecCCccCcccccCCCCCCCccccchhHHHHHHHHHH
Confidence            976443333           3554 45666666 543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=95.30  E-value=0.053  Score=51.30  Aligned_cols=66  Identities=8%  Similarity=-0.015  Sum_probs=50.3

Q ss_pred             CCCCCeEEEEcCccchHHHHHH-HhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCC-CCEEEEEecCC
Q 018003          175 PVLGGNIIDASCGSGLFSRIFA-KSGL-FSLVVALDYSENMLKQCYEFVQQESNFPK-ENFLLVRADIS  240 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~-~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~d~~  240 (362)
                      ..++..++|+|++.|.++..++ +.++ ..+|+++|+++...+..+++++...|... .++.++..-+.
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            4578899999999999999887 4443 36999999999999999998876101113 57777765543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.17  E-value=0.085  Score=48.53  Aligned_cols=94  Identities=14%  Similarity=0.138  Sum_probs=65.1

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD  250 (362)
                      .....++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++.        ... .++ .+...+  . ..+|
T Consensus       171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~v~-~~~~~~--~-~~~D  236 (348)
T 3two_A          171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM--------GVK-HFY-TDPKQC--K-EELD  236 (348)
T ss_dssp             HTTCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT--------TCS-EEE-SSGGGC--C-SCEE
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc--------CCC-eec-CCHHHH--h-cCCC
Confidence            34667799999999986 77777777763 34999999999988888762        111 122 333222  2 2799


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +|+-.-.-.      ..+....+.|+|+|+++...
T Consensus       237 ~vid~~g~~------~~~~~~~~~l~~~G~iv~~G  265 (348)
T 3two_A          237 FIISTIPTH------YDLKDYLKLLTYNGDLALVG  265 (348)
T ss_dssp             EEEECCCSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCCcH------HHHHHHHHHHhcCCEEEEEC
Confidence            998543311      24778889999999999764

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.14  E-value=0.11  Score=43.36  Aligned_cols=95  Identities=18%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----  243 (362)
                      +.....++.+||..|+  |.|.....++. .|.  +|+++|.+++.++.+++.        .... .  .|.....    
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~~--------g~~~-~--~d~~~~~~~~~   98 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSRL--------GVEY-V--GDSRSVDFADE   98 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHTT--------CCSE-E--EETTCSTHHHH
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc--------CCCE-E--eeCCcHHHHHH
Confidence            3445667899999995  45666555544 454  899999999877766541        1111 1  2332211    


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                          ...+.+|+|+.+..       ...++...+.|+|||+++...
T Consensus        99 ~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A           99 ILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             HHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred             HHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence                11236999986543       146888999999999988754

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=95.08  E-value=0.014  Score=38.79  Aligned_cols=37  Identities=14%  Similarity=0.159  Sum_probs=26.3

Q ss_pred             ccccCCeeeCCCCCC-CcccccCCCCccccccCCceecCccCccccc
Q 018003           65 ASTSKNVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        65 ~~~~~~~l~CP~C~~-~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.+..+.||.|++ ++....         ..+.+.|..||.++..
T Consensus         5 ~~~ll~~~~Cp~C~~~~lv~D~---------~~ge~vC~~CGlVl~e   42 (58)
T 1dl6_A            5 RLDALPRVTCPNHPDAILVEDY---------RAGDMICPECGLVVGD   42 (58)
T ss_dssp             SCCCCSCCSBTTBSSSCCEECS---------SSCCEECTTTCCEECC
T ss_pred             hhhccccccCcCCCCCceeEeC---------CCCeEEeCCCCCEEec
Confidence            445667779999988 443322         3478999999988654

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=94.91  E-value=0.0067  Score=46.86  Aligned_cols=28  Identities=21%  Similarity=0.450  Sum_probs=24.2

Q ss_pred             ccCCceecCccCcccccCCceeeeecCC
Q 018003           94 AAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        94 ~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.+|.+.|++||+.|++++|+++++..-
T Consensus        95 V~EG~L~Cp~cgr~ypI~~GIPNm~~~~  122 (125)
T 3q87_A           95 VVEGSLRCDMCGLIYPIKGSIVETVDTV  122 (125)
T ss_dssp             EEEEEEEETTTCCEEEEETTEEECSSCB
T ss_pred             EEEEEEECCCCCCEeeccCCcccHHHhc
Confidence            4568999999999999999999887653

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=94.47  E-value=0.18  Score=44.30  Aligned_cols=107  Identities=16%  Similarity=0.155  Sum_probs=69.9

Q ss_pred             CCeEEEEcCccchHHHHHHHh-------CCCCEEEEEe-----CCHH-------------------HHHHHHHHH-----
Q 018003          178 GGNIIDASCGSGLFSRIFAKS-------GLFSLVVALD-----YSEN-------------------MLKQCYEFV-----  221 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~gvD-----~s~~-------------------~~~~a~~~~-----  221 (362)
                      .+.|+|+|+-.|..+..++..       ++..+++|+|     +.+.                   ..+..++.+     
T Consensus        70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~  149 (257)
T 3tos_A           70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC  149 (257)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred             CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence            569999999999987776542       4567999999     4321                   011111111     


Q ss_pred             -hhcCCCCCCCEEEEEecCCC-CC-----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          222 -QQESNFPKENFLLVRADISR-LP-----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       222 -~~~~~~~~~~~~~~~~d~~~-~p-----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                       +.. +....++.++.+++.+ +|     .+.++||+|..-.-.  -..-...++.+...|+|||++++-..+
T Consensus       150 ~~~~-g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          150 SDFF-GHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TSTT-TTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             hhhc-CCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence             111 1224789999999855 33     245579999976632  122346799999999999999986643

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.46  E-value=0.18  Score=46.06  Aligned_cols=99  Identities=16%  Similarity=0.161  Sum_probs=65.8

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--C--C
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--F--A  245 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~--~  245 (362)
                      +.....++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.        ... ..+..+-.++.  .  .
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~i~~~~~~~~~~~~~~  229 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRL--------GAE-VAVNARDTDPAAWLQKE  229 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCS-EEEETTTSCHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHc--------CCC-EEEeCCCcCHHHHHHHh
Confidence            444667799999999986 88888887763 34999999999998888763        111 12221111110  0  1


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+.+|+|+....     . ...++...+.|+|+|++++..
T Consensus       230 ~g~~d~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          230 IGGAHGVLVTAV-----S-PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             HSSEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCCEEEEeCC-----C-HHHHHHHHHHhccCCEEEEeC
Confidence            136888875432     2 346888999999999998753

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.45  E-value=0.11  Score=47.01  Aligned_cols=92  Identities=9%  Similarity=0.034  Sum_probs=61.3

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcc
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI  249 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~f  249 (362)
                      +.....++.+||-+|+|. |.++..+++.. +.+|++++ +++.++.+++.          ....+.-|.+.+   .+.+
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~l----------Ga~~v~~d~~~v---~~g~  200 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKR----------GVRHLYREPSQV---TQKY  200 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHH----------TEEEEESSGGGC---CSCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHc----------CCCEEEcCHHHh---CCCc
Confidence            556677899999999974 77777777753 24999999 98888888763          122222232222   4679


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      |+|+-.-.     .+  .+.+..+.|+|+|+++..
T Consensus       201 Dvv~d~~g-----~~--~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          201 FAIFDAVN-----SQ--NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             EEEECC--------------TTGGGEEEEEEEEEE
T ss_pred             cEEEECCC-----ch--hHHHHHHHhcCCCEEEEE
Confidence            99984322     22  236678999999999876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=94.43  E-value=0.085  Score=47.51  Aligned_cols=57  Identities=23%  Similarity=0.218  Sum_probs=40.0

Q ss_pred             CCEEEEEecCCC-CC-CCCCcceEEEecccccCCC--------------------CHHHHHHHHHhhccCCcEEEEEEE
Q 018003          230 ENFLLVRADISR-LP-FASSSIDAVHAGAAIHCWS--------------------SPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       230 ~~~~~~~~d~~~-~p-~~~~~fD~V~~~~vl~h~~--------------------d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .+..++++|..+ ++ +++++||+|+++--.....                    ....+++++.++|||||.+++...
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            467899999865 22 4578999999874432111                    123567899999999999998764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.42  E-value=0.07  Score=48.73  Aligned_cols=61  Identities=11%  Similarity=0.044  Sum_probs=50.6

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~  224 (362)
                      .|...++.+.+... .++..|||.=||+|..+.+..+.|.  +.+|+|+++...+.+++++...
T Consensus       237 kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~~  297 (323)
T 1boo_A          237 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLDN  297 (323)
T ss_dssp             CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSCS
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHhc
Confidence            34566677776553 4688999999999999999988876  9999999999999999987654

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.38  E-value=0.21  Score=45.45  Aligned_cols=96  Identities=9%  Similarity=-0.041  Sum_probs=62.9

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CC----
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LP----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p----  243 (362)
                      +.....++.+||-.|+  |.|..+..+++.. +.+|+++|.+++.++.+++.        ....   ..|..+ -.    
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~~--------g~~~---~~d~~~~~~~~~~  206 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI--------GFDA---AFNYKTVNSLEEA  206 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCSE---EEETTSCSCHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc--------CCcE---EEecCCHHHHHHH
Confidence            4456677899999998  4576666655542 24999999999888877432        1111   123322 11    


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                         ...+.+|+|+.+..-       ..+....+.|++||++++..
T Consensus       207 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          207 LKKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             HHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEe
Confidence               112469999865541       34788899999999998753

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=94.32  E-value=0.11  Score=52.55  Aligned_cols=130  Identities=14%  Similarity=0.123  Sum_probs=79.5

Q ss_pred             CCeEEEEcCccchHHHHHHHhC-------C-----CCEEEEEeC---CHHHHHHHHH-----------HHhhcCC-----
Q 018003          178 GGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDY---SENMLKQCYE-----------FVQQESN-----  226 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~---s~~~~~~a~~-----------~~~~~~~-----  226 (362)
                      .-+|||+|-|+|.+.....+..       |     ..+++++|.   +++.+..+-+           ..+....     
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            4589999999999766554431       1     135899998   7776664332           1111100     


Q ss_pred             ------CCCCCEEEEEecCCC-CC-C--C-CCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCC
Q 018003          227 ------FPKENFLLVRADISR-LP-F--A-SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGP  291 (362)
Q Consensus       227 ------~~~~~~~~~~~d~~~-~p-~--~-~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~  291 (362)
                            .+...+.++.+|+.+ ++ +  . ...||+|+.-.--. -.+|    ..+++.+.++++|||.+...  .    
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p-~~np~~w~~~~~~~l~~~~~~g~~~~t~--~----  219 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP-AKNPDMWTQNLFNAMARLARPGGTLATF--T----  219 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG-GGCGGGSCHHHHHHHHHHEEEEEEEEES--C----
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC-cCChhhhhHHHHHHHHHHhCCCCEEEec--c----
Confidence                  001234566677643 22 1  1 46799998744211 1234    47899999999999987621  1    


Q ss_pred             CcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          292 FNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                                                  ....+++.|.++||.+.+...++
T Consensus       220 ----------------------------~~~~vr~~L~~aGf~v~~~~~~g  242 (676)
T 3ps9_A          220 ----------------------------SAGFVRRGLQDAGFTMQKRKGFG  242 (676)
T ss_dssp             ----------------------------CCHHHHHHHHHHTCEEEEEECST
T ss_pred             ----------------------------CcHHHHHHHHhCCeEEEeccccc
Confidence                                        11368889999999877655444

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.30  E-value=0.15  Score=46.83  Aligned_cols=100  Identities=14%  Similarity=0.146  Sum_probs=66.6

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      +.....++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.        .. ..++..+-.++.      
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga-~~vi~~~~~~~~~~v~~~  230 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY--------GA-TDIINYKNGDIVEQILKA  230 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH--------TC-CEEECGGGSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh--------CC-ceEEcCCCcCHHHHHHHH
Confidence            556667899999999986 77888877764223799999999988888774        11 112211111110      


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .....+|+|+-.-.     .+ ..+....+.|+|||+++...
T Consensus       231 t~g~g~D~v~d~~g-----~~-~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          231 TDGKGVDKVVIAGG-----DV-HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TTTCCEEEEEECSS-----CT-THHHHHHHHEEEEEEEEECC
T ss_pred             cCCCCCCEEEECCC-----Ch-HHHHHHHHHHhcCCEEEEec
Confidence            11236999985332     22 35888999999999998764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=94.29  E-value=0.13  Score=52.06  Aligned_cols=131  Identities=17%  Similarity=0.163  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC-------C-----CCEEEEEeC---CHHHHHHHHH-----------HHhhcC-----
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSG-------L-----FSLVVALDY---SENMLKQCYE-----------FVQQES-----  225 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~-------~-----~~~v~gvD~---s~~~~~~a~~-----------~~~~~~-----  225 (362)
                      +.-+|+|+|.|+|.+...+.+..       |     ..+++.+|.   +.+.+..+-+           .++...     
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            34689999999999876665431       1     146899998   4444443221           111110     


Q ss_pred             ------CCCCCCEEEEEecCCC-CC-CC---CCcceEEEecccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCC
Q 018003          226 ------NFPKENFLLVRADISR-LP-FA---SSSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDG  290 (362)
Q Consensus       226 ------~~~~~~~~~~~~d~~~-~p-~~---~~~fD~V~~~~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~  290 (362)
                            ..+...+.++.+|+.+ ++ +.   ++.+|+++.-.---. .+|    ..++..+.++++|||.+.-  +.   
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-~np~~w~~~~~~~l~~~~~~g~~~~t--~~---  211 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-KNPDMWNEQLFNAMARMTRPGGTFST--FT---  211 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEE--SC---
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-CChhhhhHHHHHHHHHHhCCCCEEEe--cc---
Confidence                  0011256678888743 22 11   467999987442111 123    5789999999999997661  11   


Q ss_pred             CCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          291 PFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                                                   ....+++.|.++||.+.+...++
T Consensus       212 -----------------------------~~~~vr~~l~~aGf~~~~~~~~~  234 (689)
T 3pvc_A          212 -----------------------------AAGFVRRGLQQAGFNVTKVKGFG  234 (689)
T ss_dssp             -----------------------------CCHHHHHHHHHTTCEEEEEECSS
T ss_pred             -----------------------------CcHHHHHHHHhCCeEEEeccCCC
Confidence                                         11368899999999877655443

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.26  E-value=0.26  Score=46.35  Aligned_cols=98  Identities=14%  Similarity=0.061  Sum_probs=63.6

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------CCC
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FAS  246 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------~~~  246 (362)
                      ...++.+||=+|+|. |.++..+++.....+|+++|.+++.++.+++.        ... .++..+-.++.      ...
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~i~~~t~g  280 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL--------GAD-HVIDPTKENFVEAVLDYTNG  280 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH--------TCS-EEECTTTSCHHHHHHHHTTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc--------CCC-EEEcCCCCCHHHHHHHHhCC
Confidence            456789999999875 77777777764223899999999999888764        111 12211111110      112


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhc----cCCcEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVL----RPGGVFVGTT  285 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~L----kpgG~li~~~  285 (362)
                      ..+|+|+-     ....+...+..+.+.|    ++||++++..
T Consensus       281 ~g~D~vid-----~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G  318 (404)
T 3ip1_A          281 LGAKLFLE-----ATGVPQLVWPQIEEVIWRARGINATVAIVA  318 (404)
T ss_dssp             CCCSEEEE-----CSSCHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred             CCCCEEEE-----CCCCcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence            36999874     4445544566666666    9999998764

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.25  E-value=0.21  Score=45.75  Aligned_cols=71  Identities=18%  Similarity=0.211  Sum_probs=53.5

Q ss_pred             CeEEEEcCccchHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcceEEEe
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVHA  254 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~fD~V~~  254 (362)
                      .+++|+-||.|.+...+...|.. ..+.++|+++.+.+..+.+        .+...++.+|+..+.   ++...+|+++.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N--------~~~~~~~~~DI~~~~~~~~~~~~~D~l~g   75 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHN--------FPETNLLNRNIQQLTPQVIKKWNVDTILM   75 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH--------CTTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHh--------CCCCceeccccccCCHHHhccCCCCEEEe
Confidence            37999999999999999988742 3578999999988887776        344456778887764   22336899996


Q ss_pred             ccc
Q 018003          255 GAA  257 (362)
Q Consensus       255 ~~v  257 (362)
                      ..-
T Consensus        76 gpP   78 (333)
T 4h0n_A           76 SPP   78 (333)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            533

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.25  E-value=0.13  Score=47.84  Aligned_cols=94  Identities=17%  Similarity=0.172  Sum_probs=62.7

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe---c-CCCCCCCCC
Q 018003          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---D-ISRLPFASS  247 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d-~~~~p~~~~  247 (362)
                      ....++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. .       .. .++..   | ...+  . +
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l-G-------a~-~vi~~~~~~~~~~~--~-~  256 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL-G-------AD-EVVNSRNADEMAAH--L-K  256 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-T-------CS-EEEETTCHHHHHTT--T-T
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C-------Cc-EEeccccHHHHHHh--h-c
Confidence            4566799999999985 77777777653 34899999999988888763 1       11 12211   1 1111  1 4


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+|+|+-.-.-.      ..++...+.|+|+|+++...
T Consensus       257 g~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          257 SFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             CEEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             CCCEEEECCCCH------HHHHHHHHHhccCCEEEEec
Confidence            699998543321      23677889999999988653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=94.22  E-value=0.099  Score=48.81  Aligned_cols=71  Identities=24%  Similarity=0.263  Sum_probs=56.0

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC--------CCCcce
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF--------ASSSID  250 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~--------~~~~fD  250 (362)
                      .+++|+-||.|.++..+...|. ..+.++|+++.+++..+.+        .++..++++|+.++..        ..+.+|
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~-~~v~avE~d~~a~~t~~~N--------~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D   73 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAIN--------FPRSLHVQEDVSLLNAEIIKGFFKNDMPID   73 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTC-EEEEEECSCHHHHHHHHHH--------CTTSEEECCCGGGCCHHHHHHHHCSCCCCC
T ss_pred             CeEEEEccCcCHHHHHHHHCCC-cEEEEEeCCHHHHHHHHHh--------CCCCceEecChhhcCHHHHHhhcccCCCee
Confidence            4899999999999999999885 3567999999988887775        4566788899877631        245799


Q ss_pred             EEEecccc
Q 018003          251 AVHAGAAI  258 (362)
Q Consensus       251 ~V~~~~vl  258 (362)
                      +|+...--
T Consensus        74 ~i~ggpPC   81 (376)
T 3g7u_A           74 GIIGGPPC   81 (376)
T ss_dssp             EEEECCCC
T ss_pred             EEEecCCC
Confidence            99976543

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.22  E-value=0.38  Score=43.99  Aligned_cols=100  Identities=14%  Similarity=0.119  Sum_probs=62.2

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      +.....++.+||=+|+|. |.++..+++.....+|+++|.+++-++.+++.         .....+...-.+..      
T Consensus       157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~---------Ga~~~i~~~~~~~~~~v~~~  227 (348)
T 4eez_A          157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI---------GADVTINSGDVNPVDEIKKI  227 (348)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT---------TCSEEEEC-CCCHHHHHHHH
T ss_pred             cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc---------CCeEEEeCCCCCHHHHhhhh
Confidence            344567799999999987 44555555543346999999999988887763         11112221111110      


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .....+|.++...+      -...+....+.|+++|++++..
T Consensus       228 t~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          228 TGGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             TTSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred             cCCCCceEEEEecc------CcchhheeheeecCCceEEEEe
Confidence            11234666664322      2356888899999999988754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=94.16  E-value=1  Score=45.45  Aligned_cols=160  Identities=11%  Similarity=0.152  Sum_probs=92.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHhhcC------------CCC--------
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQQES------------NFP--------  228 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~gvD~s~~~~~~a~~~~~~~~------------~~~--------  228 (362)
                      +...|+-+|||.=.....+....+        ...++=+|. ++.++.=++.+....            ...        
T Consensus       107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  185 (695)
T 2zwa_A          107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFL  185 (695)
T ss_dssp             SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCE
T ss_pred             CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHHHHhhccccccccccccccccc
Confidence            356899999999888777765522        345556665 334443334443210            000        


Q ss_pred             -CCCEEEEEecCCCCC----------C-CCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcc
Q 018003          229 -KENFLLVRADISRLP----------F-ASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNL  294 (362)
Q Consensus       229 -~~~~~~~~~d~~~~p----------~-~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~  294 (362)
                       ..+..++.+|+.+..          + .....=++++-.+|.+++..  .++|+.+.+.  |+|.+++.+...... ..
T Consensus       186 ~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~~--~~~~~~~~e~~~~~~-~~  262 (695)
T 2zwa_A          186 TTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSKM--ENSHFIILEQLIPKG-PF  262 (695)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHTS--SSEEEEEEEECCTTC-TT
T ss_pred             cCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhhC--CCceEEEEEeecCCC-CC
Confidence             137889999998741          1 23334467777888888533  3678877754  677777766543211 12


Q ss_pred             hhhhHHHHHhhh-hcccccccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          295 IPFSRLLRQVCF-LDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       295 ~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      .++.......+. ....... -..+.+.++..+.|.++||..+....+
T Consensus       263 d~f~~~m~~~~~~~g~~l~~-~~~~~~~~~~~~~~~~~Gw~~v~~~~~  309 (695)
T 2zwa_A          263 EPFSKQMLAHFKRNDSPLQS-VLKYNTIESQVQRFNKLGFAYVNVGDM  309 (695)
T ss_dssp             SHHHHHHHHHHHHTTCCCCG-GGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred             ChHHHHHHHHHHHcCCCCCc-cccCCCHHHHHHHHHHCCCCCcceeeH
Confidence            222222222211 0011222 345678999999999999987665543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.15  E-value=0.23  Score=46.23  Aligned_cols=103  Identities=16%  Similarity=0.100  Sum_probs=66.7

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec--CCCC---
Q 018003          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD--ISRL---  242 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d--~~~~---  242 (362)
                      +.+.....++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.         .-...+...  -..+   
T Consensus       185 l~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~l---------Ga~~vi~~~~~~~~~~~~  255 (378)
T 3uko_A          185 VWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF---------GVNEFVNPKDHDKPIQEV  255 (378)
T ss_dssp             HHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTT---------TCCEEECGGGCSSCHHHH
T ss_pred             HHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc---------CCcEEEccccCchhHHHH
Confidence            34555667899999999975 77777777763223799999999988888752         111122111  1111   


Q ss_pred             --CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEEE
Q 018003          243 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  286 (362)
Q Consensus       243 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~~  286 (362)
                        ....+.+|+|+-.-     ..+ ..++...+.|++| |++++...
T Consensus       256 i~~~~~gg~D~vid~~-----g~~-~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          256 IVDLTDGGVDYSFECI-----GNV-SVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             HHHHTTSCBSEEEECS-----CCH-HHHHHHHHTBCTTTCEEEECSC
T ss_pred             HHHhcCCCCCEEEECC-----CCH-HHHHHHHHHhhccCCEEEEEcc
Confidence              01234799998532     333 4588899999997 99887643

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.12  E-value=0.37  Score=44.50  Aligned_cols=99  Identities=14%  Similarity=0.136  Sum_probs=66.4

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      +.....++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.        ... ..+..+..++.      
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~v~~~  252 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFAL--------GAD-HGINRLEEDWVERVYAL  252 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHc--------CCC-EEEcCCcccHHHHHHHH
Confidence            455667899999999886 77777777753 35999999999988888764        111 12222211111      


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .....+|+|+-.-.       ...+....+.|+|||++++...
T Consensus       253 ~~g~g~D~vid~~g-------~~~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          253 TGDRGADHILEIAG-------GAGLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             HTTCCEEEEEEETT-------SSCHHHHHHHEEEEEEEEEECC
T ss_pred             hCCCCceEEEECCC-------hHHHHHHHHHhhcCCEEEEEec
Confidence            11236999986543       1247778899999999987743

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=94.09  E-value=0.27  Score=45.30  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=65.3

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec---CCC----C
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISR----L  242 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~----~  242 (362)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.+++.++.+++.        ... ..+..+   ..+    +
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~~i  235 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI--------GAD-LVLQISKESPQEIARKV  235 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT--------TCS-EEEECSSCCHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--------CCC-EEEcCcccccchHHHHH
Confidence            344667799999999986 88888887764223899999999988888752        111 222211   000    0


Q ss_pred             -CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       ....+.+|+|+-.-     ..+ ..+....++|+|||+++...
T Consensus       236 ~~~~~~g~D~vid~~-----g~~-~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          236 EGQLGCKPEVTIECT-----GAE-ASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHTSCCSEEEECS-----CCH-HHHHHHHHHSCTTCEEEECS
T ss_pred             HHHhCCCCCEEEECC-----CCh-HHHHHHHHHhcCCCEEEEEe
Confidence             00014689998533     232 45788899999999998754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.99  E-value=0.12  Score=47.05  Aligned_cols=61  Identities=21%  Similarity=0.342  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCH---HHHHHHHHHHhhc
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE---NMLKQCYEFVQQE  224 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~---~~~~~a~~~~~~~  224 (362)
                      .|...++.+..... .++..|||.=||+|..+.+..+.+.  +.+|+|+++   ..++.+++++...
T Consensus       227 kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~  290 (319)
T 1eg2_A          227 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDD  290 (319)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHc
Confidence            45667777776654 4688999999999999999998886  999999999   9999999986554

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=93.84  E-value=0.36  Score=44.59  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=61.8

Q ss_pred             CCCeEEEEc-Ccc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-----CCCCCc
Q 018003          177 LGGNIIDAS-CGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PFASSS  248 (362)
Q Consensus       177 ~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-----p~~~~~  248 (362)
                      ++.+||-+| +|. |.++..+++.....+|+++|.+++.++.+++.        ... .++  |..+ +     ....+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l--------Gad-~vi--~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL--------GAH-HVI--DHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT--------TCS-EEE--CTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc--------CCC-EEE--eCCCCHHHHHHHhcCCC
Confidence            688999998 554 88888888862235999999999988888762        111 111  1111 1     112357


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      +|+|+-.-.      -...+.++.+.|+++|++++.
T Consensus       240 ~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFSTTH------TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence            998875322      234688899999999999876

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=93.79  E-value=0.031  Score=35.87  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      .--||.||+......         ....+.|+.||.++-
T Consensus        19 ~k~CP~CG~~~fm~~---------~~~R~~C~kCG~t~~   48 (50)
T 3j20_Y           19 NKFCPRCGPGVFMAD---------HGDRWACGKCGYTEW   48 (50)
T ss_dssp             SEECSSSCSSCEEEE---------CSSEEECSSSCCEEE
T ss_pred             cccCCCCCCceEEec---------CCCeEECCCCCCEEE
Confidence            344999998654332         126899999998754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.76  E-value=0.59  Score=42.84  Aligned_cols=99  Identities=16%  Similarity=0.133  Sum_probs=64.6

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CCCC-----
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~~p-----  243 (362)
                      +.....++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++.        ... ..+..+- .+..     
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~~~~~~~~~~~~~i~~  231 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GAD-VTLVVDPAKEEESSIIE  231 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCS-EEEECCTTTSCHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHh--------CCC-EEEcCcccccHHHHHHH
Confidence            344566789999999875 77777777653 34799999999988888752        111 2222110 1110     


Q ss_pred             -CC---CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       ..   .+.+|+|+..-.     . ...++...++|+|+|+++...
T Consensus       232 ~~~~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          232 RIRSAIGDLPNVTIDCSG-----N-EKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHHSSSCCSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECS
T ss_pred             HhccccCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEe
Confidence             01   246999985432     2 245788899999999998754

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=93.72  E-value=0.44  Score=44.15  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=67.0

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-------  242 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-------  242 (362)
                      +.....++.+||-+|+|. |.++..+++..-...|+++|.+++.++.+++.        ... ..+...-.++       
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~i~~~  246 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV--------GAT-ATVDPSAGDVVEAIAGP  246 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH--------TCS-EEECTTSSCHHHHHHST
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc--------CCC-EEECCCCcCHHHHHHhh
Confidence            445667799999999976 77777777764223899999999988888774        111 1111111110       


Q ss_pred             -CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                       ....+.+|+|+-.-     .. ...++...+.|++||++++...
T Consensus       247 ~~~~~gg~Dvvid~~-----G~-~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          247 VGLVPGGVDVVIECA-----GV-AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TSSSTTCEEEEEECS-----CC-HHHHHHHHHHEEEEEEEEECSC
T ss_pred             hhccCCCCCEEEECC-----CC-HHHHHHHHHHhccCCEEEEEec
Confidence             02234799998532     22 3468889999999999987643

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.71  E-value=0.29  Score=45.63  Aligned_cols=76  Identities=9%  Similarity=0.043  Sum_probs=51.4

Q ss_pred             CCeEEEEcCccchHHHHHHHh-------CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcce
Q 018003          178 GGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSID  250 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD  250 (362)
                      .-.|+|+|+|.|.++..+.+.       ....+++.||+|+...+.-++++...     .++.+. .++.++|  ++ .-
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~-----~~v~W~-~~l~~lp--~~-~~  151 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVP--EG-PA  151 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSC--CS-SE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC-----CCeEEe-CChhhcC--CC-Ce
Confidence            457999999999998777543       12348999999998887666655443     256654 3444554  22 45


Q ss_pred             EEEecccccCCC
Q 018003          251 AVHAGAAIHCWS  262 (362)
Q Consensus       251 ~V~~~~vl~h~~  262 (362)
                      +|+++.++..+|
T Consensus       152 ~viANE~fDAlP  163 (387)
T 1zkd_A          152 VILANEYFDVLP  163 (387)
T ss_dssp             EEEEESSGGGSC
T ss_pred             EEEeccccccCc
Confidence            778888776664

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=93.69  E-value=0.38  Score=44.55  Aligned_cols=102  Identities=13%  Similarity=0.066  Sum_probs=65.5

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--CCC---
Q 018003          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL---  242 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~---  242 (362)
                      +.+.....++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.        ... .++..+-  .++   
T Consensus       183 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~  253 (373)
T 1p0f_A          183 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL--------GAT-ECLNPKDYDKPIYEV  253 (373)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT--------TCS-EEECGGGCSSCHHHH
T ss_pred             HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc--------CCc-EEEecccccchHHHH
Confidence            33445567789999999875 77777777753223799999999988888752        111 1221110  111   


Q ss_pred             --CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003          243 --PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  285 (362)
Q Consensus       243 --p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~  285 (362)
                        ....+.+|+|+-.-     .. ...++...++|+++ |+++...
T Consensus       254 i~~~t~gg~Dvvid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          254 ICEKTNGGVDYAVECA-----GR-IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             HHHHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHHHhCCCCCEEEECC-----CC-HHHHHHHHHHHhcCCCEEEEEc
Confidence              01123699998433     22 34588899999999 9988754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=93.66  E-value=0.27  Score=44.77  Aligned_cols=100  Identities=11%  Similarity=0.013  Sum_probs=65.6

Q ss_pred             HHHhhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          168 LMKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      .+.+.....++.+||-.|+  |.|..+..+++.. +.+|++++.+++.++.+.+.+       ... ..+  |.....  
T Consensus       140 al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~-------g~~-~~~--~~~~~~~~  208 (336)
T 4b7c_A          140 ALLDVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEEL-------GFD-GAI--DYKNEDLA  208 (336)
T ss_dssp             HHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTT-------CCS-EEE--ETTTSCHH
T ss_pred             HHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc-------CCC-EEE--ECCCHHHH
Confidence            3435566778999999998  4577777766653 349999999998888773321       111 112  222111  


Q ss_pred             -----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                           ...+.+|+|+.+-.       ...+....+.|++||++++..
T Consensus       209 ~~~~~~~~~~~d~vi~~~g-------~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          209 AGLKRECPKGIDVFFDNVG-------GEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             HHHHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHHhcCCCceEEEECCC-------cchHHHHHHHHhhCCEEEEEe
Confidence                 11346999986443       136888999999999998754

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=93.55  E-value=0.53  Score=43.59  Aligned_cols=101  Identities=15%  Similarity=0.101  Sum_probs=65.0

Q ss_pred             HhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--CCCC---
Q 018003          170 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRLP---  243 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~p---  243 (362)
                      .+.....++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.         .--..+...-  ..+.   
T Consensus       185 ~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l---------Ga~~vi~~~~~~~~~~~~~  255 (374)
T 1cdo_A          185 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF---------GATDFVNPNDHSEPISQVL  255 (374)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCCEEECGGGCSSCHHHHH
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh---------CCceEEeccccchhHHHHH
Confidence            3445566789999999875 77777777764222799999999988888752         1111221110  1110   


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  285 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~  285 (362)
                        ...+.+|+|+-.-     .. ...++...++|++| |++++..
T Consensus       256 ~~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          256 SKMTNGGVDFSLECV-----GN-VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             HHHHTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHhCCCCCEEEECC-----CC-HHHHHHHHHHhhcCCcEEEEEc
Confidence              1123689988533     22 34588899999999 9988753

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=93.52  E-value=0.84  Score=41.59  Aligned_cols=68  Identities=19%  Similarity=0.193  Sum_probs=51.8

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEecc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA  256 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~  256 (362)
                      +.+++|+-||.|.+...+...|. ..+.++|+++.+++..+.++...        .  .+|+..+... -..+|+|+...
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~--------~--~~Di~~~~~~~~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK--------P--EGDITQVNEKTIPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC--------C--BSCGGGSCGGGSCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCC--------C--cCCHHHcCHhhCCCCCEEEECC
Confidence            46899999999999999999885 45889999999999888875432        1  5787665321 13589999763

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=93.52  E-value=0.53  Score=43.57  Aligned_cols=101  Identities=13%  Similarity=0.081  Sum_probs=64.9

Q ss_pred             HhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--CCCC---
Q 018003          170 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRLP---  243 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~p---  243 (362)
                      .+.....++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.        ... ..+..+-  .++.   
T Consensus       184 ~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~~  254 (374)
T 2jhf_A          184 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV--------GAT-ECVNPQDYKKPIQEVL  254 (374)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TCS-EEECGGGCSSCHHHHH
T ss_pred             HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCc-eEecccccchhHHHHH
Confidence            3445566789999999876 77777777764222799999999988888752        111 1221110  1110   


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  285 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~  285 (362)
                        ...+.+|+|+-.-     .. ...+....++|+++ |++++..
T Consensus       255 ~~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          255 TEMSNGGVDFSFEVI-----GR-LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             HHHTTSCBSEEEECS-----CC-HHHHHHHHHHBCTTTCEEEECS
T ss_pred             HHHhCCCCcEEEECC-----CC-HHHHHHHHHHhhcCCcEEEEec
Confidence              1123699987433     22 24588899999999 9988653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=93.46  E-value=0.53  Score=43.58  Aligned_cols=102  Identities=14%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--CCCC--
Q 018003          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRLP--  243 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~p--  243 (362)
                      +.+.....++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.        ... ..+..+-  .++.  
T Consensus       187 l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l--------Ga~-~vi~~~~~~~~~~~~  257 (376)
T 1e3i_A          187 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL--------GAT-DCLNPRELDKPVQDV  257 (376)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT--------TCS-EEECGGGCSSCHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCc-EEEccccccchHHHH
Confidence            33445667789999999875 77777777764223799999999988888752        111 1221110  1110  


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  285 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~  285 (362)
                         ...+.+|+|+-.-     .. ...++...+.|++| |++++..
T Consensus       258 v~~~~~~g~Dvvid~~-----G~-~~~~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          258 ITELTAGGVDYSLDCA-----GT-AQTLKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             HHHHHTSCBSEEEESS-----CC-HHHHHHHHHTBCTTTCEEEECC
T ss_pred             HHHHhCCCccEEEECC-----CC-HHHHHHHHHHhhcCCCEEEEEC
Confidence               1123689987432     22 34688899999999 9988754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=93.34  E-value=0.88  Score=41.83  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=67.4

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC---CC---
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS---RL---  242 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~---  242 (362)
                      +.....+|.+||-+|+|. |.++..+++.. +.+ |+++|.+++.++.+++. ...      -+.+. .+..   ++   
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~~------~~~~~-~~~~~~~~~~~~  243 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CPE------VVTHK-VERLSAEESAKK  243 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CTT------CEEEE-CCSCCHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-chh------ccccc-ccccchHHHHHH
Confidence            445667799999999976 78888887763 235 99999999999999875 221      22222 1110   00   


Q ss_pred             ---CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          243 ---PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       243 ---p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                         ......+|+|+-.-     ..+ ..+....++|++||++++...
T Consensus       244 v~~~t~g~g~Dvvid~~-----g~~-~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          244 IVESFGGIEPAVALECT-----GVE-SSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             HHHHTSSCCCSEEEECS-----CCH-HHHHHHHHHSCTTCEEEECCC
T ss_pred             HHHHhCCCCCCEEEECC-----CCh-HHHHHHHHHhcCCCEEEEEcc
Confidence               01234699998533     232 358889999999999987643

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.26  E-value=0.46  Score=43.45  Aligned_cols=97  Identities=13%  Similarity=0.105  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C-CC
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-AS  246 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~-~~  246 (362)
                      ...++.+||-+|+|. |..+..+++.....+|+++|.+++.++.+++.         .-...+..+- +..     . ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l---------Ga~~~i~~~~-~~~~~v~~~t~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV---------GADAAVKSGA-GAADAIRELTGG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT---------TCSEEEECST-THHHHHHHHHGG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc---------CCCEEEcCCC-cHHHHHHHHhCC
Confidence            456789999999976 88887777753235999999999999888763         1111222111 110     0 12


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ..+|+|+-.-     ..+ ..++...+.|++||++++...
T Consensus       238 ~g~d~v~d~~-----G~~-~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          238 QGATAVFDFV-----GAQ-STIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GCEEEEEESS-----CCH-HHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCeEEEECC-----CCH-HHHHHHHHHHhcCCEEEEECC
Confidence            3689888532     232 468899999999999987643

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.21  E-value=0.26  Score=45.15  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=62.4

Q ss_pred             cCCCCCCeEEEEcCc--cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-------
Q 018003          173 LKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------  243 (362)
Q Consensus       173 l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-------  243 (362)
                      ....++.+||-.|+|  .|..+..+++...+.+|+++|.+++.++.+++.        .... .+  |..+..       
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~--------g~~~-~~--~~~~~~~~~~~~~  234 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA--------GADY-VI--NASMQDPLAEIRR  234 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH--------TCSE-EE--ETTTSCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh--------CCCE-Ee--cCCCccHHHHHHH
Confidence            456678999999998  466655555542124899999999888888653        1111 11  222111       


Q ss_pred             CCC-CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FAS-SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~-~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ... +.+|+|+....     . ...++...+.|+|+|+++...
T Consensus       235 ~~~~~~~d~vi~~~g-----~-~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          235 ITESKGVDAVIDLNN-----S-EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             HTTTSCEEEEEESCC-----C-HHHHTTGGGGEEEEEEEEECC
T ss_pred             HhcCCCceEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEC
Confidence            112 47999986543     2 346888899999999988753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=93.13  E-value=0.52  Score=43.58  Aligned_cols=101  Identities=16%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             HhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cC-CCC----
Q 018003          170 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DI-SRL----  242 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~-~~~----  242 (362)
                      .+.....++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.        ... ..+.. +. .++    
T Consensus       183 ~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga~-~vi~~~~~~~~~~~~v  253 (373)
T 2fzw_A          183 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF--------GAT-ECINPQDFSKPIQEVL  253 (373)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH--------TCS-EEECGGGCSSCHHHHH
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc--------CCc-eEeccccccccHHHHH
Confidence            3445567789999999875 77777777653222799999999988888763        111 12211 10 111    


Q ss_pred             -CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003          243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  285 (362)
Q Consensus       243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~  285 (362)
                       ....+.+|+|+-.-     .. ...++...+.|+++ |+++...
T Consensus       254 ~~~~~~g~D~vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          254 IEMTDGGVDYSFECI-----GN-VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             HHHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEECS
T ss_pred             HHHhCCCCCEEEECC-----Cc-HHHHHHHHHhhccCCcEEEEEe
Confidence             01123699988433     22 24588899999999 9988753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.13  E-value=0.36  Score=44.05  Aligned_cols=97  Identities=12%  Similarity=0.023  Sum_probs=64.0

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---CC--
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LP--  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~p--  243 (362)
                      +.....++.+||-.|+  |.|..+..+++.. +.+|++++.+++.++.+++.+       ... ..+  |...   +.  
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~-------g~~-~~~--d~~~~~~~~~~  217 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKF-------GFD-DAF--NYKEESDLTAA  217 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTS-------CCS-EEE--ETTSCSCSHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc-------CCc-eEE--ecCCHHHHHHH
Confidence            4456677899999997  4577776666642 249999999998888776421       111 111  3221   10  


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                         ...+.+|+|+.+-.     .  ..++...+.|++||++++..
T Consensus       218 ~~~~~~~~~d~vi~~~g-----~--~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          218 LKRCFPNGIDIYFENVG-----G--KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             HHHHCTTCEEEEEESSC-----H--HHHHHHHTTEEEEEEEEECC
T ss_pred             HHHHhCCCCcEEEECCC-----H--HHHHHHHHHHhcCCEEEEEc
Confidence               11246999986543     2  36888999999999998753

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=92.93  E-value=0.39  Score=43.81  Aligned_cols=102  Identities=15%  Similarity=0.183  Sum_probs=64.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCc--cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          168 LMKGYLKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      .+.+.....++.+||-+|+|  .|..+..+++.. +.+|+++|.+++.++.+++.        ... ..+...-.++.  
T Consensus       135 ~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l--------ga~-~~~~~~~~~~~~~  204 (340)
T 3gms_A          135 TCTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRL--------GAA-YVIDTSTAPLYET  204 (340)
T ss_dssp             HHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCS-EEEETTTSCHHHH
T ss_pred             HHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhC--------CCc-EEEeCCcccHHHH
Confidence            34455667789999999987  577776666642 24999999999888888763        111 12211111110  


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                          .....+|+|+..-.     .+  .+.+..+.|++||+++....
T Consensus       205 ~~~~~~~~g~Dvvid~~g-----~~--~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          205 VMELTNGIGADAAIDSIG-----GP--DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             HHHHTTTSCEEEEEESSC-----HH--HHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhCCCCCcEEEECCC-----Ch--hHHHHHHHhcCCCEEEEEee
Confidence                11246999986443     22  23445589999999987643

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=92.91  E-value=0.49  Score=43.04  Aligned_cols=98  Identities=18%  Similarity=0.181  Sum_probs=63.9

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +.....++.+||-+|+  |.|..+..+++.. +.+|++++.+++.++.+++.         .....+..+-.++.     
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~---------ga~~~~~~~~~~~~~~~~~  211 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY---------GAEYLINASKEDILRQVLK  211 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---------TCSEEEETTTSCHHHHHHH
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc---------CCcEEEeCCCchHHHHHHH
Confidence            3345677999999994  3477777776653 34999999999988887762         11112221111110     


Q ss_pred             -CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       .....+|+|+..-.-       ..++...+.|++||+++...
T Consensus       212 ~~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          212 FTNGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             HTTTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred             HhCCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence             113469999865432       35788889999999998764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.82  E-value=1.1  Score=40.64  Aligned_cols=103  Identities=16%  Similarity=0.054  Sum_probs=65.5

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----
Q 018003          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----  243 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----  243 (362)
                      ........++.+||=.|+|. |.++..+++..-...++++|.+++.++.+++.         .-...+...-...+    
T Consensus       152 ~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~l---------Ga~~~i~~~~~~~~~~~~  222 (346)
T 4a2c_A          152 AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSF---------GAMQTFNSSEMSAPQMQS  222 (346)
T ss_dssp             HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHH
T ss_pred             HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHc---------CCeEEEeCCCCCHHHHHH
Confidence            34455667799999999986 66666666653334678999999988888773         11222222111111    


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        -....+|+|+..-     .. ...++...++|++||.+++...
T Consensus       223 ~~~~~~g~d~v~d~~-----G~-~~~~~~~~~~l~~~G~~v~~g~  261 (346)
T 4a2c_A          223 VLRELRFNQLILETA-----GV-PQTVELAVEIAGPHAQLALVGT  261 (346)
T ss_dssp             HHGGGCSSEEEEECS-----CS-HHHHHHHHHHCCTTCEEEECCC
T ss_pred             hhcccCCcccccccc-----cc-cchhhhhhheecCCeEEEEEec
Confidence              1124578776432     22 3458888999999999987643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.73  E-value=0.34  Score=44.32  Aligned_cols=97  Identities=12%  Similarity=0.079  Sum_probs=64.4

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +.....++.+||-+|+  |.|..+..+++.. +.+|++++.+++.++.+++.        ... .++..+ ..+.     
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~v~~~~-~~~~~~v~~  221 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSV--------GAD-IVLPLE-EGWAKAVRE  221 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH--------TCS-EEEESS-TTHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCc-EEecCc-hhHHHHHHH
Confidence            4556677999999997  3577777777653 34999999999888888763        111 122222 2211     


Q ss_pred             -CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       .....+|+|+..-.-       ..+....+.|++||++++..
T Consensus       222 ~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          222 ATGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             HTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             HhCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence             112369999865442       24778889999999998764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=92.69  E-value=0.77  Score=42.11  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=62.7

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +.....++.+||-.|+  |.|..+..+++.. +.+|++++.+++.++.+++.        ... ..  .|..+..     
T Consensus       164 ~~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~--~d~~~~~~~~~~  231 (351)
T 1yb5_A          164 HSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN--------GAH-EV--FNHREVNYIDKI  231 (351)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EE--EETTSTTHHHHH
T ss_pred             HhhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHc--------CCC-EE--EeCCCchHHHHH
Confidence            3455667899999997  4577666666542 34999999999888876652        111 11  2322211     


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                         .....+|+|+.+..       ...+....+.|+++|+++...
T Consensus       232 ~~~~~~~~~D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          232 KKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             HHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHcCCCCcEEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence               11236999986543       135778899999999998754

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.63  E-value=0.32  Score=44.54  Aligned_cols=95  Identities=16%  Similarity=0.151  Sum_probs=62.3

Q ss_pred             cCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC---CCC----
Q 018003          173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS---RLP----  243 (362)
Q Consensus       173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~---~~p----  243 (362)
                      ....++.+||-+|+  |.|..+..+++.. +.+|+++|.+++.++.+++.        ... ..  .|..   ++.    
T Consensus       165 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~--------g~~-~~--~d~~~~~~~~~~~~  232 (347)
T 2hcy_A          165 ANLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI--------GGE-VF--IDFTKEKDIVGAVL  232 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT--------TCC-EE--EETTTCSCHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc--------CCc-eE--EecCccHhHHHHHH
Confidence            35667899999998  4577766666542 24999999998887777652        111 11  2432   110    


Q ss_pred             -CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       ...+.+|+|+..-.     . ...++.+.+.|+++|+++...
T Consensus       233 ~~~~~~~D~vi~~~g-----~-~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          233 KATDGGAHGVINVSV-----S-EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             HHHTSCEEEEEECSS-----C-HHHHHHHTTSEEEEEEEEECC
T ss_pred             HHhCCCCCEEEECCC-----c-HHHHHHHHHHHhcCCEEEEEe
Confidence             01126899986543     1 346888999999999988754

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.63  E-value=0.3  Score=44.43  Aligned_cols=57  Identities=21%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             CCEEEEEecCCC-CC-CCCCcceEEEecccccCC--------------CCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          230 ENFLLVRADISR-LP-FASSSIDAVHAGAAIHCW--------------SSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       230 ~~~~~~~~d~~~-~p-~~~~~fD~V~~~~vl~h~--------------~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ....++++|... +. +++++||+|++.--....              ......++++.++|||||.+++...
T Consensus        13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~   85 (323)
T 1boo_A           13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   85 (323)
T ss_dssp             SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence            467888998754 33 457899999987432111              1245789999999999999998764

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=92.57  E-value=0.047  Score=39.02  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=24.0

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.||.||.+.....         ..+.|.|+.|+..+..
T Consensus        26 ~~y~Cp~CG~~~v~r~---------atGiW~C~~Cg~~~ag   57 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKFTG   57 (83)
T ss_dssp             SCEECSSSCCEEEEEE---------ETTEEEETTTCCEEEC
T ss_pred             ccCcCCCCCCcceecc---------CCCeEECCCCCCEecC
Confidence            4579999998654432         2379999999987665

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=92.53  E-value=0.53  Score=42.64  Aligned_cols=100  Identities=12%  Similarity=0.038  Sum_probs=64.9

Q ss_pred             HhhcCCCCCCeEEEEc-Cc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----
Q 018003          170 KGYLKPVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----  243 (362)
Q Consensus       170 ~~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----  243 (362)
                      .+.....++.+||-+| +| .|..+..+++.. +.+|++++.+++.++.+++.        ... ..+..+-.++.    
T Consensus       133 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~~~~~~~~~~~~~  202 (325)
T 3jyn_A          133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKAL--------GAW-ETIDYSHEDVAKRVL  202 (325)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHH
T ss_pred             HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCC-EEEeCCCccHHHHHH
Confidence            3444567799999999 34 477777766652 24999999999988888763        111 12221111110    


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        .....+|+|+..-.-       ..+....+.|++||+++....
T Consensus       203 ~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          203 ELTDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             HHTTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCC
T ss_pred             HHhCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEec
Confidence              122469999865432       357788999999999988654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.40  E-value=0.24  Score=45.69  Aligned_cols=98  Identities=10%  Similarity=0.105  Sum_probs=62.1

Q ss_pred             cCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC-CC--CCCCCc
Q 018003          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS-RL--PFASSS  248 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~-~~--p~~~~~  248 (362)
                      ....++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++. .       .. .++..+-. ++  ... +.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~l-G-------a~-~v~~~~~~~~~~~~~~-~~  243 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM-G-------AD-HYIATLEEGDWGEKYF-DT  243 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH-T-------CS-EEEEGGGTSCHHHHSC-SC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHc-C-------CC-EEEcCcCchHHHHHhh-cC
Confidence            4566789999999865 77777776642 23899999999888888763 1       11 12221111 11  011 46


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +|+|+..-.-.    ....++...++|++||+++...
T Consensus       244 ~D~vid~~g~~----~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          244 FDLIVVCASSL----TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             EEEEEECCSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred             CCEEEECCCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence            99998654320    0123566788999999988653

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=92.38  E-value=0.032  Score=38.89  Aligned_cols=14  Identities=50%  Similarity=1.374  Sum_probs=10.5

Q ss_pred             CeeeCCCCCCCccc
Q 018003           70 NVLACPICYKPLTW   83 (362)
Q Consensus        70 ~~l~CP~C~~~l~~   83 (362)
                      .+..||+||+++..
T Consensus         7 ~~~~~PlCG~~L~W   20 (95)
T 2k5c_A            7 HMAKCPICGSPLKW   20 (95)
T ss_dssp             -CEECSSSCCEECH
T ss_pred             ccccCCcCCCccCH
Confidence            56789999997654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.34  E-value=0.89  Score=41.40  Aligned_cols=94  Identities=21%  Similarity=0.182  Sum_probs=62.4

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC------C
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA------S  246 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~------~  246 (362)
                      ...++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++.        ... ..  .|.....+.      .
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~--~d~~~~~~~~~~~~~~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL--------GAD-LV--VNPLKEDAAKFMKEKV  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT--------TCS-EE--ECTTTSCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHC--------CCC-EE--ecCCCccHHHHHHHHh
Confidence            566789999999964 77766666653 34999999999988888652        111 11  233221110      0


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +.+|+|+..-.     . ...++...++|+++|+++...
T Consensus       229 ~~~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          229 GGVHAAVVTAV-----S-KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             SSEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence            46899885432     2 246788899999999988653

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.20  E-value=0.84  Score=41.64  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=62.8

Q ss_pred             cCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-------
Q 018003          173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------  243 (362)
Q Consensus       173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-------  243 (362)
                      ....++.+||-+|+  |.|..+..+++.. +.+|+++|.+++.++.+++. .       .. ..  .|.....       
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-g-------a~-~~--~d~~~~~~~~~~~~  229 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL-G-------AD-ET--VNYTHPDWPKEVRR  229 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-T-------CS-EE--EETTSTTHHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-C-------CC-EE--EcCCcccHHHHHHH
Confidence            35567899999998  4677777766653 34999999999988888653 1       11 11  2332211       


Q ss_pred             -CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       .....+|+|+..-. .      ..++.+.+.|+++|+++...
T Consensus       230 ~~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          230 LTGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             HTTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESS
T ss_pred             HhCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEe
Confidence             11246999986654 2      24778889999999988754

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=92.20  E-value=0.87  Score=41.95  Aligned_cols=101  Identities=12%  Similarity=0.091  Sum_probs=65.1

Q ss_pred             HHhhcCCCCCCeEEEEc-Cc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003          169 MKGYLKPVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---  243 (362)
                      +.+.....++.+||-+| +| .|..+..+++.. +.+|++++.+++.++.+++.        ... ..+..+-..+.   
T Consensus       155 l~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------Ga~-~~~~~~~~~~~~~~  224 (362)
T 2c0c_A          155 LKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL--------GCD-RPINYKTEPVGTVL  224 (362)
T ss_dssp             HHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCS-EEEETTTSCHHHHH
T ss_pred             HHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc--------CCc-EEEecCChhHHHHH
Confidence            33444566789999999 34 577777777653 34999999999888887762        111 12221111110   


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        ...+.+|+|+..-.     .  ..++.+.+.|+++|+++....
T Consensus       225 ~~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          225 KQEYPEGVDVVYESVG-----G--AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             HHHCTTCEEEEEECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred             HHhcCCCCCEEEECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence              11246999986543     2  468889999999999887643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=91.86  E-value=0.72  Score=42.36  Aligned_cols=89  Identities=17%  Similarity=0.179  Sum_probs=59.2

Q ss_pred             CeEEEEcCcc-chHH-HHHH-HhCCCCE-EEEEeCCHH---HHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-----C
Q 018003          179 GNIIDASCGS-GLFS-RIFA-KSGLFSL-VVALDYSEN---MLKQCYEFVQQESNFPKENFLLVRADISRLPFA-----S  246 (362)
Q Consensus       179 ~~vLDiGcG~-G~~~-~~l~-~~~~~~~-v~gvD~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-----~  246 (362)
                      .+||-+|+|. |.++ ..++ +.. +.+ |+++|.+++   .++.+++.          ....+  |.....+.     .
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~l----------Ga~~v--~~~~~~~~~i~~~~  240 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEEL----------DATYV--DSRQTPVEDVPDVY  240 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHHT----------TCEEE--ETTTSCGGGHHHHS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHHc----------CCccc--CCCccCHHHHHHhC
Confidence            8999999865 7777 7777 542 345 999999987   78887652          22222  33221111     2


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +.+|+|+-.     ...+ ..+++..+.|+++|+++....
T Consensus       241 gg~Dvvid~-----~g~~-~~~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          241 EQMDFIYEA-----TGFP-KHAIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             CCEEEEEEC-----SCCH-HHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEEC-----CCCh-HHHHHHHHHHhcCCEEEEEeC
Confidence            368998743     2232 358889999999999887643

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=91.83  E-value=0.49  Score=44.00  Aligned_cols=100  Identities=21%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             hhcC-CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec---CCC----
Q 018003          171 GYLK-PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD---ISR----  241 (362)
Q Consensus       171 ~~l~-~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d---~~~----  241 (362)
                      +... ..++.+||-+|+|. |.++..+++..-..+|+++|.+++.++.+++.        .. -.++..+   -.+    
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l--------Ga-~~vi~~~~~~~~~~~~~  258 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI--------GA-DLTLNRRETSVEERRKA  258 (380)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT--------TC-SEEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc--------CC-cEEEeccccCcchHHHH
Confidence            3455 66789999999775 77777777763114999999999988888752        11 1122211   000    


Q ss_pred             C-CC-CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          242 L-PF-ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       242 ~-p~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      + .. ....+|+|+-.-.     .+ ..+....+.|+++|+++...
T Consensus       259 v~~~~~g~g~Dvvid~~g-----~~-~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          259 IMDITHGRGADFILEATG-----DS-RALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             HHHHTTTSCEEEEEECSS-----CT-THHHHHHHHEEEEEEEEECC
T ss_pred             HHHHhCCCCCcEEEECCC-----CH-HHHHHHHHHHhcCCEEEEEe
Confidence            0 01 1236999985432     21 35788899999999988754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.66  E-value=0.75  Score=42.06  Aligned_cols=96  Identities=11%  Similarity=0.087  Sum_probs=63.6

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +.... ++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++.        ... ..+  |.....     
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~--------Ga~-~~~--~~~~~~~~~~v  228 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKV--------GAD-YVI--NPFEEDVVKEV  228 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHH--------TCS-EEE--CTTTSCHHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh--------CCC-EEE--CCCCcCHHHHH
Confidence            34455 789999999974 77777777653 34 899999999888888753        111 111  222111     


Q ss_pred             --C-CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 --F-ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 --~-~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                        . ....+|+|+..-.     . ...++.+.+.|+++|+++...
T Consensus       229 ~~~~~g~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          229 MDITDGNGVDVFLEFSG-----A-PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             HHHTTTSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECC
T ss_pred             HHHcCCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEc
Confidence              0 1236999985432     2 345788899999999988754

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=91.49  E-value=0.084  Score=38.30  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=23.5

Q ss_pred             ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      .++..+...||.|+.++...+           +.+.|..|+..|..
T Consensus        26 ~~~~~M~~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f~~   60 (101)
T 2jne_A           26 PRGSHMELHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   60 (101)
T ss_dssp             -----CCCBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             cCcccccccCccCCCcceecC-----------CEEECccccchhhc
Confidence            444556689999999988754           56778888876654

>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}

Probab=91.48  E-value=0.043  Score=43.23  Aligned_cols=28  Identities=14%  Similarity=0.294  Sum_probs=24.3

Q ss_pred             ccCCceecCccCcccccCCceeeeecCC
Q 018003           94 AAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        94 ~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.++.+.|+.||+.|++++|++.++..+
T Consensus       105 v~eg~L~C~~cg~~YPI~dGIP~mL~~e  132 (141)
T 2j6a_A          105 IAEGEMKCRNCGHIYYIKNGIPNLLLPP  132 (141)
T ss_dssp             EEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred             ccCCEEECCCCCCcccccCCccCcCCcH
Confidence            3457899999999999999999988764

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=91.39  E-value=0.44  Score=42.76  Aligned_cols=71  Identities=11%  Similarity=0.061  Sum_probs=54.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---C-CCcceE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---A-SSSIDA  251 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---~-~~~fD~  251 (362)
                      ...+++|+=||.|.+...+.+.|.... +.++|+++.+.+..+.+        .+...++.+|+.++..   + .+.+|+
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N--------~~~~~~~~~DI~~i~~~~i~~~~~~Dl   86 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR--------HQGKIMYVGDVRSVTQKHIQEWGPFDL   86 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH--------TTTCEEEECCGGGCCHHHHHHTCCCSE
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh--------CCCCceeCCChHHccHHHhcccCCcCE
Confidence            456899999999999999999886433 68999999888776665        3445678899987641   1 136899


Q ss_pred             EEec
Q 018003          252 VHAG  255 (362)
Q Consensus       252 V~~~  255 (362)
                      ++..
T Consensus        87 l~gg   90 (295)
T 2qrv_A           87 VIGG   90 (295)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9976

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.21  E-value=0.65  Score=42.03  Aligned_cols=95  Identities=11%  Similarity=0.072  Sum_probs=62.2

Q ss_pred             hcCCCCCCeEEEEcC--ccchHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          172 YLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      .....++.+||-.|+  |.|..+..+++ .|.  +|+++|.+++.++.+++.        .... .+  |..+..     
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~~~--------g~~~-~~--~~~~~~~~~~~  201 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA--------GAWQ-VI--NYREEDLVERL  201 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH--------TCSE-EE--ETTTSCHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc--------CCCE-EE--ECCCccHHHHH
Confidence            445667899999994  45666655555 454  999999999888887763        1111 11  322211     


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                         .....+|+|+.+..       ...++.+.+.|++||+++....
T Consensus       202 ~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          202 KEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             HHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence               11236999986654       2357888999999999887543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=91.08  E-value=1.5  Score=39.99  Aligned_cols=90  Identities=12%  Similarity=0.170  Sum_probs=59.8

Q ss_pred             CCCeEEEE-cCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-C-----CCCCCc
Q 018003          177 LGGNIIDA-SCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-L-----PFASSS  248 (362)
Q Consensus       177 ~~~~vLDi-GcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~-----p~~~~~  248 (362)
                      ++.+||-+ |+|. |..+..+++.. +.+|++++.+++.++.+++. .       .. ..+  |... +     ....+.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-G-------a~-~vi--~~~~~~~~~~~~~~~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKM-G-------AD-IVL--NHKESLLNQFKTQGIEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHH-T-------CS-EEE--CTTSCHHHHHHHHTCCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc-C-------Cc-EEE--ECCccHHHHHHHhCCCC
Confidence            68899999 4554 77777777653 34999999999988888873 1       11 111  1111 1     012346


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      +|+|+..-.      -...+..+.++|+++|+++..
T Consensus       218 ~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          218 VDYVFCTFN------TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred             ccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence            999885322      235678899999999999754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.06  E-value=2.1  Score=33.33  Aligned_cols=91  Identities=10%  Similarity=0.080  Sum_probs=60.3

Q ss_pred             CCeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceE
Q 018003          178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  251 (362)
Q Consensus       178 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~  251 (362)
                      ..+|+=+|+|. |. ++..|.+.|.  +|+++|.+++.++.+++          ..+.++.+|..+..    ..-..+|+
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~--~v~vid~~~~~~~~~~~----------~g~~~i~gd~~~~~~l~~a~i~~ad~   74 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI--PLVVIETSRTRVDELRE----------RGVRAVLGNAANEEIMQLAHLECAKW   74 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEESCTTSHHHHHHTTGGGCSE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHH----------cCCCEEECCCCCHHHHHhcCcccCCE
Confidence            35899999985 54 3444555565  89999999998887765          35678889986532    11246788


Q ss_pred             EEecccccCCCCHH--HHHHHHHhhccCCcEEEEEE
Q 018003          252 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       252 V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+..-     ++..  ..+....+.+.|+..++...
T Consensus        75 vi~~~-----~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           75 LILTI-----PNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             EEEEC-----CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            87543     3333  23445667778888777554

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=91.05  E-value=1.4  Score=40.47  Aligned_cols=86  Identities=14%  Similarity=0.118  Sum_probs=57.1

Q ss_pred             CCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCH---HHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC------C
Q 018003          178 GGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSE---NMLKQCYEFVQQESNFPKENFLLVRADISRLPFA------S  246 (362)
Q Consensus       178 ~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~------~  246 (362)
                      +.+||-+|+|. |..+..+++. |.  +|+++|.++   +.++.+++.          ....+  | .+ .+.      .
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga--~Vi~~~~~~~~~~~~~~~~~~----------ga~~v--~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGL--EVWMANRREPTEVEQTVIEET----------KTNYY--N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTC--EEEEEESSCCCHHHHHHHHHH----------TCEEE--E-CT-TCSHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCccchHHHHHHHHh----------CCcee--c-hH-HHHHHHHHhC
Confidence            88999999854 6665555554 54  999999998   777777653          12222  3 22 211      1


Q ss_pred             CcceEEEecccccCCCCHHHHH-HHHHhhccCCcEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGV-AEISRVLRPGGVFVGTT  285 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l-~~i~r~LkpgG~li~~~  285 (362)
                      +.+|+|+..-..     + ..+ +...+.|+++|+++...
T Consensus       245 ~~~d~vid~~g~-----~-~~~~~~~~~~l~~~G~iv~~g  278 (366)
T 2cdc_A          245 GKFDVIIDATGA-----D-VNILGNVIPLLGRNGVLGLFG  278 (366)
T ss_dssp             CCEEEEEECCCC-----C-THHHHHHGGGEEEEEEEEECS
T ss_pred             CCCCEEEECCCC-----h-HHHHHHHHHHHhcCCEEEEEe
Confidence            469999865432     2 135 88899999999988754

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=90.85  E-value=0.58  Score=44.19  Aligned_cols=45  Identities=13%  Similarity=0.249  Sum_probs=35.4

Q ss_pred             CeEEEEcCccchHHHHHHHh----CC-CCEEEEEeCCHHHHHHHHHHHhh
Q 018003          179 GNIIDASCGSGLFSRIFAKS----GL-FSLVVALDYSENMLKQCYEFVQQ  223 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~----~~-~~~v~gvD~s~~~~~~a~~~~~~  223 (362)
                      ..|+|+|+|+|.+...+.+.    ++ ..+++.||+|+...+.-++++..
T Consensus       139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            58999999999987776543    21 24899999999988877777764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=90.74  E-value=0.69  Score=41.74  Aligned_cols=90  Identities=13%  Similarity=0.111  Sum_probs=59.5

Q ss_pred             eEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCCCCcceEEEecc
Q 018003          180 NIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAGA  256 (362)
Q Consensus       180 ~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~~~  256 (362)
                      +||=.|+ | .|..+..+++.. +.+|++++.+++.++.+++.        .....+-..+.... ....+.+|+|+-. 
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~~vi~~~~~~~~~~~~~~~~d~v~d~-  218 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSL--------GANRILSRDEFAESRPLEKQLWAGAIDT-  218 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHH--------TCSEEEEGGGSSCCCSSCCCCEEEEEES-
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCCEEEecCCHHHHHhhcCCCccEEEEC-
Confidence            4999997 3 588888887763 34999999999988888763        11111111121111 1223578987743 


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                          ...  ..+.+..+.|+|+|+++...
T Consensus       219 ----~g~--~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          219 ----VGD--KVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             ----SCH--HHHHHHHHTEEEEEEEEECC
T ss_pred             ----CCc--HHHHHHHHHHhcCCEEEEEe
Confidence                333  27899999999999998764

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.68  E-value=1.5  Score=40.18  Aligned_cols=97  Identities=5%  Similarity=-0.067  Sum_probs=63.6

Q ss_pred             hhcCCCCC--CeEEEEcC--ccchHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          171 GYLKPVLG--GNIIDASC--GSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       171 ~~l~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      +.....++  .+||-.|+  |.|..+..+++.. +. +|+++|.+++.++.+++.+.       .. ..  .|.....  
T Consensus       152 ~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g-------~~-~~--~d~~~~~~~  220 (357)
T 2zb4_A          152 EKGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELG-------FD-AA--INYKKDNVA  220 (357)
T ss_dssp             HHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSC-------CS-EE--EETTTSCHH
T ss_pred             HhcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcC-------Cc-eE--EecCchHHH
Confidence            45566678  99999998  3476666666653 35 89999999887777765221       11 11  2332211  


Q ss_pred             -----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                           ...+.+|+|+.+-.       ...++...+.|++||++++..
T Consensus       221 ~~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          221 EQLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             HHHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence                 11226899986554       256888999999999998754

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=90.64  E-value=1.2  Score=42.53  Aligned_cols=96  Identities=17%  Similarity=0.187  Sum_probs=63.3

Q ss_pred             cCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-------
Q 018003          173 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-------  243 (362)
Q Consensus       173 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-------  243 (362)
                      ....++.+||=+|+ | .|.++..+++.. +.++++++.+++.++.+++.        .. ..++...-.+..       
T Consensus       224 ~~~~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~~l--------Ga-~~vi~~~~~d~~~~~~~~~  293 (456)
T 3krt_A          224 AGMKQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICRAM--------GA-EAIIDRNAEGYRFWKDENT  293 (456)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TC-CEEEETTTTTCCSEEETTE
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHHhh--------CC-cEEEecCcCcccccccccc
Confidence            45667899999997 4 488877777763 35899999999988888763        11 112211111110       


Q ss_pred             ----------------CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ----------------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ----------------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                                      .....+|+|+-.-.     .  ..+....++|++||++++..
T Consensus       294 ~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          294 QDPKEWKRFGKRIRELTGGEDIDIVFEHPG-----R--ETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             ECHHHHHHHHHHHHHHHTSCCEEEEEECSC-----H--HHHHHHHHHEEEEEEEEESC
T ss_pred             cchHHHHHHHHHHHHHhCCCCCcEEEEcCC-----c--hhHHHHHHHhhCCcEEEEEe
Confidence                            01246999885332     2  56888999999999998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=90.59  E-value=0.5  Score=43.17  Aligned_cols=95  Identities=11%  Similarity=0.112  Sum_probs=62.2

Q ss_pred             CCCCCCeEEEEcCcc-chHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe----cC-CCCCCCC
Q 018003          174 KPVLGGNIIDASCGS-GLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA----DI-SRLPFAS  246 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~----d~-~~~p~~~  246 (362)
                      .. ++.+||-+|+|. |.++..+++.. ++.+|+++|.+++.++.+++. .       .. .++..    |. ..+. ..
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-G-------a~-~vi~~~~~~~~~~~~~-~g  236 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-G-------AD-YVSEMKDAESLINKLT-DG  236 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-T-------CS-EEECHHHHHHHHHHHH-TT
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-C-------CC-EEeccccchHHHHHhh-cC
Confidence            45 789999999975 77777776652 135899999999988888763 1       11 11111    10 1111 12


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..+|+|+-.-.     . ...++...+.|+|||+++...
T Consensus       237 ~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          237 LGASIAIDLVG-----T-EETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             CCEEEEEESSC-----C-HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCccEEEECCC-----C-hHHHHHHHHHhhcCCEEEEeC
Confidence            36999985432     2 236888999999999988754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=90.45  E-value=0.91  Score=41.63  Aligned_cols=99  Identities=10%  Similarity=0.010  Sum_probs=63.9

Q ss_pred             hhcCCCCCCeEEEEc-Cc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +.....++.+||-+| +| .|..+..+++.. +.+|+++|.+++.++.+++.        ... ..+..+-.++.     
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l--------Ga~-~~~~~~~~~~~~~~~~  230 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERL--------GAK-RGINYRSEDFAAVIKA  230 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCC-EEEeCCchHHHHHHHH
Confidence            445567789999995 33 477777776653 34999999999988888763        111 12211111110     


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ...+.+|+|+..-.-       ..+....+.|+++|+++....
T Consensus       231 ~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          231 ETGQGVDIILDMIGA-------AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             HHSSCEEEEEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HhCCCceEEEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence            013469999865442       257788899999999887643

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=90.26  E-value=1.3  Score=40.64  Aligned_cols=97  Identities=8%  Similarity=-0.036  Sum_probs=62.6

Q ss_pred             hhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +.....++.+||-.|+  |.|..+..+++.. +.+|+++|.+++.++.+++.        .... .  .|.....     
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------g~~~-~--~~~~~~~~~~~~  223 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL--------GAAA-G--FNYKKEDFSEAT  223 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH--------TCSE-E--EETTTSCHHHHH
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc--------CCcE-E--EecCChHHHHHH
Confidence            3445667899999984  4577666666542 34999999999888888543        1111 1  2222211     


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                         .....+|+|+.+-.-     +  .+....+.|++||+++....
T Consensus       224 ~~~~~~~~~d~vi~~~G~-----~--~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          224 LKFTKGAGVNLILDCIGG-----S--YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             HHHTTTSCEEEEEESSCG-----G--GHHHHHHHEEEEEEEEECCC
T ss_pred             HHHhcCCCceEEEECCCc-----h--HHHHHHHhccCCCEEEEEec
Confidence               112469999865542     2  47778899999999987643

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=90.24  E-value=1.6  Score=40.29  Aligned_cols=95  Identities=13%  Similarity=0.085  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEc-Cc-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcc
Q 018003          175 PVLGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSI  249 (362)
Q Consensus       175 ~~~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~f  249 (362)
                      ..++.+||-.| +| .|..+..+++.. +.+|++++ +++.++.+++.        ... ..+..+-.++.   ...+.+
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~~l--------Ga~-~v~~~~~~~~~~~~~~~~g~  249 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVRKL--------GAD-DVIDYKSGSVEEQLKSLKPF  249 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT--------TCS-EEEETTSSCHHHHHHTSCCB
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHHHc--------CCC-EEEECCchHHHHHHhhcCCC
Confidence            56789999999 45 488777777653 35899998 66666666542        111 12211111110   011468


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+|+-.-     ..+...+....+.|++||+++...
T Consensus       250 D~vid~~-----g~~~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          250 DFILDNV-----GGSTETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             SEEEESS-----CTTHHHHGGGGBCSSSCCEEEESC
T ss_pred             CEEEECC-----CChhhhhHHHHHhhcCCcEEEEeC
Confidence            9987443     344345678889999999988653

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=90.20  E-value=1.2  Score=40.16  Aligned_cols=96  Identities=16%  Similarity=0.092  Sum_probs=59.7

Q ss_pred             hhcCCCCCCeEEEEc-Ccc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCCC
Q 018003          171 GYLKPVLGGNIIDAS-CGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASS  247 (362)
Q Consensus       171 ~~l~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~~  247 (362)
                      +.....++.+||=+| +|. |.++..+++.. +.+|++++ +++..+.+++.        ... ..+..+-.+ +.-.-.
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~-~~~~~~~~~~l--------Ga~-~~i~~~~~~~~~~~~~  214 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA-SKRNHAFLKAL--------GAE-QCINYHEEDFLLAIST  214 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-CHHHHHHHHHH--------TCS-EEEETTTSCHHHHCCS
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe-ccchHHHHHHc--------CCC-EEEeCCCcchhhhhcc
Confidence            556677899999997 554 88888887763 35899998 45556666653        111 122211111 111114


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      .+|+|+-.-     ..+  .+....+.|+++|+++..
T Consensus       215 g~D~v~d~~-----g~~--~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          215 PVDAVIDLV-----GGD--VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             CEEEEEESS-----CHH--HHHHHGGGEEEEEEEEEC
T ss_pred             CCCEEEECC-----CcH--HHHHHHHhccCCCEEEEe
Confidence            689887432     222  248889999999999865

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=89.90  E-value=0.38  Score=44.32  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=59.4

Q ss_pred             cCCC-CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCCCCCCCCcc
Q 018003          173 LKPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFASSSI  249 (362)
Q Consensus       173 l~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~p~~~~~f  249 (362)
                      .... ++.+||-+|+|. |.++..+++.. +.+|+++|.+++.++.+++.+.      ...  ++.. +...+.-..+.+
T Consensus       175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lG------a~~--vi~~~~~~~~~~~~~g~  245 (357)
T 2cf5_A          175 FGLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLG------ADD--YVIGSDQAKMSELADSL  245 (357)
T ss_dssp             TSTTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSC------CSC--EEETTCHHHHHHSTTTE
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcC------Cce--eeccccHHHHHHhcCCC
Confidence            3455 789999999875 77776766652 2499999999887777763221      111  1111 100000011368


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+|+-.-.-.      ..++...++|+|||+++...
T Consensus       246 D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          246 DYVIDTVPVH------HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             EEEEECCCSC------CCSHHHHTTEEEEEEEEECS
T ss_pred             CEEEECCCCh------HHHHHHHHHhccCCEEEEeC
Confidence            9998543321      12566778999999988753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=89.59  E-value=0.43  Score=42.73  Aligned_cols=91  Identities=16%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCC--CCcc
Q 018003          175 PVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFA--SSSI  249 (362)
Q Consensus       175 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~--~~~f  249 (362)
                      ..++.+||-+|+  |.|..+..+++.. +.+|+++|.+++.++.+++.        ... ..+  |... ..+.  -+.+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~--------ga~-~~~--~~~~~~~~~~~~~~~  190 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL--------GAE-EAA--TYAEVPERAKAWGGL  190 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT--------TCS-EEE--EGGGHHHHHHHTTSE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc--------CCC-EEE--ECCcchhHHHHhcCc
Confidence            567899999998  3577777776653 34999999999888877652        111 112  2111 0000  0469


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+|+. -.     .  ..++...+.|+++|+++...
T Consensus       191 d~vid-~g-----~--~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          191 DLVLE-VR-----G--KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             EEEEE-CS-----C--TTHHHHHTTEEEEEEEEEC-
T ss_pred             eEEEE-CC-----H--HHHHHHHHhhccCCEEEEEe
Confidence            99986 32     2  25788899999999988754

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=89.57  E-value=0.16  Score=38.87  Aligned_cols=30  Identities=30%  Similarity=0.729  Sum_probs=24.0

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +-.||.|++......          ...+.|+.|++.+..
T Consensus        27 lP~CP~C~seytYeD----------g~l~vCPeC~hEW~~   56 (138)
T 2akl_A           27 LPPCPQCNSEYTYED----------GALLVCPECAHEWSP   56 (138)
T ss_dssp             SCCCTTTCCCCCEEC----------SSSEEETTTTEEECT
T ss_pred             CCCCCCCCCcceEec----------CCeEECCccccccCC
Confidence            356999999887654          357999999999854

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=89.43  E-value=1.4  Score=39.97  Aligned_cols=96  Identities=15%  Similarity=0.108  Sum_probs=62.6

Q ss_pred             hcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          172 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      .....++.+||-.|+  |.|..+..+++.. +.+|+++|.+++.++.+++.        .... .  .|.....      
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~--------g~~~-~--~d~~~~~~~~~i~  207 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL--------GCHH-T--INYSTQDFAEVVR  207 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH--------TCSE-E--EETTTSCHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc--------CCCE-E--EECCCHHHHHHHH
Confidence            445667899999995  4577666665542 24999999999888877653        1111 1  1332211      


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        .....+|+|+.+..-       ..++...+.|++||+++....
T Consensus       208 ~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          208 EITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             HHHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred             HHhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence              112369999865432       357888999999999887643

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.31  E-value=3.6  Score=36.42  Aligned_cols=104  Identities=12%  Similarity=0.160  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCcc----ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C--
Q 018003          177 LGGNIIDASCGS----GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--  244 (362)
Q Consensus       177 ~~~~vLDiGcG~----G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~--  244 (362)
                      .++++|=.|++.    |. ++..|++.|.  +|+.++.++...+.+++..+..     .++.++.+|+.+..     +  
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~  102 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEEL-----GAFVAGHCDVADAASIDAVFET  102 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHH-----TCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHH
Confidence            467899999763    32 5666777776  8999999876555555444433     46889999997642     0  


Q ss_pred             ---CCCcceEEEecccccC----C-----CCH--------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 ---ASSSIDAVHAGAAIHC----W-----SSP--------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 ---~~~~fD~V~~~~vl~h----~-----~d~--------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                         .-+..|+++.+..+..    .     .++              ..+++.+.+.++.+|.++.....
T Consensus       103 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~  171 (293)
T 3grk_A          103 LEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY  171 (293)
T ss_dssp             HHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred             HHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence               1247899998876542    0     111              13466677778888988876543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=88.96  E-value=3  Score=37.16  Aligned_cols=78  Identities=22%  Similarity=0.219  Sum_probs=57.7

Q ss_pred             CCCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C---
Q 018003          176 VLGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  244 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---  244 (362)
                      -.++++|=.|++.|.   ++..|+++|.  +|+.++.+++.++...+.+...    ..++.++.+|+.+..     +   
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~  102 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQ----GFDAHGVVCDVRHLDEMVRLADEA  102 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCceEEEEccCCCHHHHHHHHHHH
Confidence            346789999987653   4566666676  9999999999888887777665    468899999997742     0   


Q ss_pred             --CCCcceEEEeccccc
Q 018003          245 --ASSSIDAVHAGAAIH  259 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~  259 (362)
                        ..+..|+++.+..+.
T Consensus       103 ~~~~g~id~lvnnAg~~  119 (301)
T 3tjr_A          103 FRLLGGVDVVFSNAGIV  119 (301)
T ss_dssp             HHHHSSCSEEEECCCCC
T ss_pred             HHhCCCCCEEEECCCcC
Confidence              014689999887654

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=88.91  E-value=0.21  Score=35.21  Aligned_cols=28  Identities=36%  Similarity=0.904  Sum_probs=18.4

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..||.|+.++...+           +..+|..|+..|..
T Consensus         3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~~~   30 (81)
T 2jrp_A            3 ITCPVCHHALERNG-----------DTAHCETCAKDFSL   30 (81)
T ss_dssp             CCCSSSCSCCEECS-----------SEEECTTTCCEEEE
T ss_pred             CCCCCCCCccccCC-----------CceECccccccCCC
Confidence            56888888877644           35567777665544

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=88.75  E-value=0.62  Score=43.00  Aligned_cols=96  Identities=15%  Similarity=0.107  Sum_probs=59.7

Q ss_pred             cCCC-CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---CCCCCC
Q 018003          173 LKPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASS  247 (362)
Q Consensus       173 l~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~p~~~~  247 (362)
                      .... ++.+||-+|+|. |..+..+++.. +.+|++++.+++.++.+++.+.       .. .++  |..+   +.-..+
T Consensus       182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lG-------a~-~v~--~~~~~~~~~~~~~  250 (366)
T 1yqd_A          182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFG-------AD-SFL--VSRDQEQMQAAAG  250 (366)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSC-------CS-EEE--ETTCHHHHHHTTT
T ss_pred             cCcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcC-------Cc-eEE--eccCHHHHHHhhC
Confidence            3455 789999999875 67766666653 3499999999987777764321       11 111  2211   100113


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+|+|+..-....      .++...+.|+++|+++...
T Consensus       251 ~~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          251 TLDGIIDTVSAVH------PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             CEEEEEECCSSCC------CSHHHHHHEEEEEEEEECC
T ss_pred             CCCEEEECCCcHH------HHHHHHHHHhcCCEEEEEc
Confidence            6999986543221      2456778899999988654

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=88.73  E-value=0.79  Score=41.80  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=61.7

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-----
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-----  244 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-----  244 (362)
                      .... ++.+||-+|+|. |..+..+++.. +. +|+++|.+++.++.+++. ..         ..  .|.....+     
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~---------~v--~~~~~~~~~~~~~  225 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-AD---------RL--VNPLEEDLLEVVR  225 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CS---------EE--ECTTTSCHHHHHH
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HH---------hc--cCcCccCHHHHHH
Confidence            4455 789999999864 77777777753 34 899999998877766542 11         11  12221110     


Q ss_pred             --CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 --ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                        ....+|+|+..-.     . ...++...+.|+++|+++...
T Consensus       226 ~~~~~g~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          226 RVTGSGVEVLLEFSG-----N-EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             HHHSSCEEEEEECSC-----C-HHHHHHHHHHEEEEEEEEECC
T ss_pred             HhcCCCCCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEe
Confidence              0236899985432     2 245788999999999988753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.46  E-value=4.5  Score=32.81  Aligned_cols=91  Identities=11%  Similarity=0.110  Sum_probs=57.4

Q ss_pred             CCeEEEEcCcc-ch-HHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----C-CCCcc
Q 018003          178 GGNIIDASCGS-GL-FSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----F-ASSSI  249 (362)
Q Consensus       178 ~~~vLDiGcG~-G~-~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~-~~~~f  249 (362)
                      +.+|+=+|+|. |. ++..|.+. |.  +|+++|.+++.++.+++          ..+..+.+|..+..    . .-..+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~~~~----------~g~~~~~gd~~~~~~l~~~~~~~~a  106 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK--ISLGIEIREEAAQQHRS----------EGRNVISGDATDPDFWERILDTGHV  106 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS--CEEEEESCHHHHHHHHH----------TTCCEEECCTTCHHHHHTBCSCCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC--eEEEEECCHHHHHHHHH----------CCCCEEEcCCCCHHHHHhccCCCCC
Confidence            56899999885 54 34555555 65  89999999988777654          23556777775421    1 12458


Q ss_pred             eEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEE
Q 018003          250 DAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+|+..-     ++..  ..+-...+.+.|++.++...
T Consensus       107 d~vi~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          107 KLVLLAM-----PHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             CEEEECC-----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             CEEEEeC-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            8888642     3333  23334556667777777654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=88.46  E-value=3.6  Score=35.54  Aligned_cols=101  Identities=23%  Similarity=0.263  Sum_probs=67.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---------  244 (362)
                      .++++|=.|++.|.   .+..|++.|.  +|+.++.+++.++...+.+       ..++.++.+|+.+..-         
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEF-------GPRVHALRSDIADLNEIAVLGAAAG   77 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------GGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCcceEEEccCCCHHHHHHHHHHHH
Confidence            46789989987653   4555666676  9999999988777666544       2468899999976420         


Q ss_pred             -CCCcceEEEecccccCCC-----CHH--------------HHHHHHHhhccCCcEEEEEEE
Q 018003          245 -ASSSIDAVHAGAAIHCWS-----SPS--------------TGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~h~~-----d~~--------------~~l~~i~r~LkpgG~li~~~~  286 (362)
                       .-+..|+++.+..+....     ++.              .+++.+.+.++++|.++....
T Consensus        78 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS  139 (255)
T 4eso_A           78 QTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSS  139 (255)
T ss_dssp             HHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             HHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECC
Confidence             114689999876654321     111              345666777778888776543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=88.31  E-value=2.6  Score=38.33  Aligned_cols=95  Identities=13%  Similarity=0.005  Sum_probs=62.8

Q ss_pred             hhcCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +.....++.+||-+|+ | .|..+..+++.. +.+|+++ .+++.++.+++.        .  ...+. +-.++.     
T Consensus       144 ~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~l--------G--a~~i~-~~~~~~~~~~~  210 (343)
T 3gaz_A          144 DRAQVQDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRDL--------G--ATPID-ASREPEDYAAE  210 (343)
T ss_dssp             TTTCCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHHH--------T--SEEEE-TTSCHHHHHHH
T ss_pred             HhcCCCCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHHc--------C--CCEec-cCCCHHHHHHH
Confidence            4556678999999994 4 477777777653 3499999 888888877663        1  11222 222211     


Q ss_pred             -CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       .....+|+|+-.-.     .  ..+....+.|+++|+++...
T Consensus       211 ~~~~~g~D~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g  246 (343)
T 3gaz_A          211 HTAGQGFDLVYDTLG-----G--PVLDASFSAVKRFGHVVSCL  246 (343)
T ss_dssp             HHTTSCEEEEEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred             HhcCCCceEEEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence             12246999885432     2  46888899999999998753

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.19  E-value=5  Score=35.07  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=69.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCC------------HHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .++++|=.|++.|.   .+..|++.|.  +|+.+|.+            .+.++.+.+.+...    ..++.++.+|+.+
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~   82 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKT----GRKAYTAEVDVRD   82 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT----TSCEEEEECCTTC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhc----CCceEEEEccCCC
Confidence            46789999987653   4556666676  99999987            66666666655554    4688999999976


Q ss_pred             CC-----C-----CCCcceEEEecccccCCC---CH--------------HHHHHHHHhhccCCcEEEEEE
Q 018003          242 LP-----F-----ASSSIDAVHAGAAIHCWS---SP--------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       242 ~p-----~-----~~~~fD~V~~~~vl~h~~---d~--------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..     +     .-+..|+++.+..+....   +.              ..+++.+.+.++.+|.++...
T Consensus        83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  153 (287)
T 3pxx_A           83 RAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG  153 (287)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence            42     0     013689999887653321   11              134566777778888877654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.18  E-value=3.8  Score=35.46  Aligned_cols=106  Identities=17%  Similarity=0.252  Sum_probs=69.0

Q ss_pred             CCCeEEEEcCc--c--ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C--
Q 018003          177 LGGNIIDASCG--S--GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--  244 (362)
Q Consensus       177 ~~~~vLDiGcG--~--G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~--  244 (362)
                      .++++|=.|++  .  |. ++..|++.|.  +|+.++.++...+...+..+..   ...++.++.+|+.+..     +  
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~v~~~~~~   80 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTL---DRNDSIILPCDVTNDAEIETCFAS   80 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTS---SSCCCEEEECCCSSSHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhc---CCCCceEEeCCCCCHHHHHHHHHH
Confidence            36789999976  3  33 5666777776  8999998876666555554443   1237899999997643     0  


Q ss_pred             ---CCCcceEEEecccccC----C-----CCHH--------------HHHHHHHhhccCCcEEEEEEEc
Q 018003          245 ---ASSSIDAVHAGAAIHC----W-----SSPS--------------TGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 ---~~~~fD~V~~~~vl~h----~-----~d~~--------------~~l~~i~r~LkpgG~li~~~~~  287 (362)
                         ..+..|+++.+..+.+    .     .++.              .+++.+.+.++++|.++.....
T Consensus        81 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~  149 (266)
T 3oig_A           81 IKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYL  149 (266)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence               0146899988766533    1     1111              2456777788888988876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=87.94  E-value=5.5  Score=35.73  Aligned_cols=80  Identities=13%  Similarity=0.186  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----  244 (362)
                      .+++||=.|++.|.   ++..|+++|.  +|++++.+++.++...+.+...  +...++.++.+|+.+..     +    
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dl~~~~~v~~~~~~~~   82 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAE--GSGPEVMGVQLDVASREGFKMAADEVE   82 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence            36689999987653   4556666676  9999999998888777766554  11237899999997642     0    


Q ss_pred             -CCCcceEEEecccccC
Q 018003          245 -ASSSIDAVHAGAAIHC  260 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~h  260 (362)
                       ..+..|+++.+..+..
T Consensus        83 ~~~g~id~lv~nAg~~~   99 (319)
T 3ioy_A           83 ARFGPVSILCNNAGVNL   99 (319)
T ss_dssp             HHTCCEEEEEECCCCCC
T ss_pred             HhCCCCCEEEECCCcCC
Confidence             1246899998877543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=87.72  E-value=9.4  Score=33.10  Aligned_cols=70  Identities=9%  Similarity=0.137  Sum_probs=49.9

Q ss_pred             CeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          179 GNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ++||=.|+  |..+..+++    +|.  +|++++-++........          .++.++.+|+.++.  ...+|+|+.
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~----------~~~~~~~~D~~d~~--~~~~d~vi~   69 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW--RIIGTSRNPDQMEAIRA----------SGAEPLLWPGEEPS--LDGVTHLLI   69 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC--EEEEEESCGGGHHHHHH----------TTEEEEESSSSCCC--CTTCCEEEE
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC--EEEEEEcChhhhhhHhh----------CCCeEEEecccccc--cCCCCEEEE
Confidence            58999995  666655554    455  99999998865544332          47899999998866  456899998


Q ss_pred             cccccCCCCH
Q 018003          255 GAAIHCWSSP  264 (362)
Q Consensus       255 ~~vl~h~~d~  264 (362)
                      ........++
T Consensus        70 ~a~~~~~~~~   79 (286)
T 3ius_A           70 STAPDSGGDP   79 (286)
T ss_dssp             CCCCBTTBCH
T ss_pred             CCCccccccH
Confidence            7765544444

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.61  E-value=5.4  Score=35.22  Aligned_cols=103  Identities=20%  Similarity=0.248  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHH-HHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C---
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSEN-MLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.++.+.. ..+...+.++..    ..++.++.+|+.+..     +   
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~  119 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKE----GVKCVLLPGDLSDEQHCKDIVQET  119 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTT----TCCEEEEESCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            36789999987653   4556666675  8999998765 344444444443    467889999997642     0   


Q ss_pred             --CCCcceEEEecccccCCC------CH--------------HHHHHHHHhhccCCcEEEEEE
Q 018003          245 --ASSSIDAVHAGAAIHCWS------SP--------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~h~~------d~--------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                        .-+..|+++.+....+..      +.              ..+++.+.+.++.+|.++...
T Consensus       120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence              114689999875543211      11              135667777888889877654

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=87.55  E-value=4.9  Score=34.59  Aligned_cols=78  Identities=10%  Similarity=0.117  Sum_probs=56.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC---
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  245 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~---  245 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.++.+++.++...+.+...    ..++.++.+|+.+..     +.   
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~   79 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAA----GGRIVARSLDARNEDEVTAFLNAAD   79 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEECcCCCHHHHHHHHHHHH
Confidence            35688888887663   4566666676  9999999998888777777665    467899999997642     00   


Q ss_pred             -CCcceEEEecccccC
Q 018003          246 -SSSIDAVHAGAAIHC  260 (362)
Q Consensus       246 -~~~fD~V~~~~vl~h  260 (362)
                       .+..|+++.+..+..
T Consensus        80 ~~g~id~lv~nAg~~~   95 (252)
T 3h7a_A           80 AHAPLEVTIFNVGANV   95 (252)
T ss_dssp             HHSCEEEEEECCCCCC
T ss_pred             hhCCceEEEECCCcCC
Confidence             157899998876543

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=87.36  E-value=0.24  Score=32.52  Aligned_cols=40  Identities=18%  Similarity=0.503  Sum_probs=22.8

Q ss_pred             eeeCCCCCCCcc-cccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ...||.|+..-. .....-...+..+...+.|.+|++.+..
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            577999998321 1111111223333457899999987643

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=87.23  E-value=0.27  Score=31.42  Aligned_cols=29  Identities=14%  Similarity=0.236  Sum_probs=22.4

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      .......||.|++.+.             .+.+.|..||+..
T Consensus        10 r~~~k~iCpkC~a~~~-------------~gaw~CrKCG~~~   38 (51)
T 3j21_g           10 RIFKKYVCLRCGATNP-------------WGAKKCRKCGYKR   38 (51)
T ss_dssp             HSSSEEECTTTCCEEC-------------TTCSSCSSSSSCC
T ss_pred             HHhCCccCCCCCCcCC-------------CCceecCCCCCcc
Confidence            3457789999998732             2689999999873

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=86.99  E-value=4.6  Score=37.34  Aligned_cols=113  Identities=10%  Similarity=0.059  Sum_probs=69.7

Q ss_pred             HHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +.|++.+.. ..+++||.++.+.|.++..++...    ++.+.-|--.....+.+++.+ +....++.+.. ..+.+   
T Consensus        27 ~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~-~~~~~~~~~~~-~~~~~---   97 (375)
T 4dcm_A           27 EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLN-GIDESSVKFLD-STADY---   97 (375)
T ss_dssp             HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHT-TCCGGGSEEEE-TTSCC---
T ss_pred             HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHc-CCCccceEecc-ccccc---
Confidence            455655433 245789999999999998887543    345543555555556666665 22222355432 22222   


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      .+.+|+|+.... .+.......|..+...|+||+.+++..-+..
T Consensus        98 ~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~  140 (375)
T 4dcm_A           98 PQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKARD  140 (375)
T ss_dssp             CSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGGG
T ss_pred             ccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEecccc
Confidence            356999886332 2222234668888899999999988776543

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=86.92  E-value=6.1  Score=34.31  Aligned_cols=105  Identities=19%  Similarity=0.225  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeC-CHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C---
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.++. +.+.++...+.+...    ..++.++.+|+.+..     +   
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~   90 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKAL----GSDAIAIKADIRQVPEIVKLFDQA   90 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCcEEEEEcCCCCHHHHHHHHHHH
Confidence            46788888877653   4556666676  8888775 455555555555554    467899999997642     0   


Q ss_pred             --CCCcceEEEecccccCCC-----CH--------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 --ASSSIDAVHAGAAIHCWS-----SP--------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                        .-+..|+++.+..+.+..     ++              ..+++.+.+.++++|.++.....
T Consensus        91 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           91 VAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence              013689999876654332     11              13467777888889988876543

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=86.89  E-value=0.27  Score=37.07  Aligned_cols=32  Identities=25%  Similarity=0.580  Sum_probs=23.0

Q ss_pred             CCeeeCCCCCCC-cccccCCCCccccccCCceecCccCccccc
Q 018003           69 KNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        69 ~~~l~CP~C~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      -....||.|+.. +...          ..++++|..|+..+..
T Consensus        58 ~akytCPfCGk~~vKR~----------avGIW~C~~Cgk~fAG   90 (116)
T 3cc2_Z           58 NEDHACPNCGEDRVDRQ----------GTGIWQCSYCDYKFTG   90 (116)
T ss_dssp             HSCEECSSSCCEEEEEE----------ETTEEEETTTCCEEEC
T ss_pred             ccCCcCCCCCCceeEec----------CceeEECCCCCCEEEC
Confidence            356889999973 2221          2379999999988765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=86.69  E-value=5  Score=30.86  Aligned_cols=90  Identities=18%  Similarity=0.161  Sum_probs=55.9

Q ss_pred             CCeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceE
Q 018003          178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  251 (362)
Q Consensus       178 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~  251 (362)
                      ..+|+=+|+|. |. +...|.+.|.  +|+++|.+++.++.+++          ..+.++.+|..+..    ..-..+|+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~--~V~~id~~~~~~~~~~~----------~~~~~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK--KVLAVDKSKEKIELLED----------EGFDAVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHH----------TTCEEEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHH----------CCCcEEECCCCCHHHHHhCCcccCCE
Confidence            35799999975 33 3444555565  89999999988877765          24677888886632    12246888


Q ss_pred             EEecccccCCCCHH--HHHHHHHhhccCCcEEEEEE
Q 018003          252 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       252 V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~  285 (362)
                      |+..-.     +..  ..+....+.+. ...++...
T Consensus        74 vi~~~~-----~~~~n~~~~~~a~~~~-~~~iia~~  103 (141)
T 3llv_A           74 VLITGS-----DDEFNLKILKALRSVS-DVYAIVRV  103 (141)
T ss_dssp             EEECCS-----CHHHHHHHHHHHHHHC-CCCEEEEE
T ss_pred             EEEecC-----CHHHHHHHHHHHHHhC-CceEEEEE
Confidence            876432     332  33444445555 55555544

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=86.65  E-value=4.9  Score=38.53  Aligned_cols=72  Identities=18%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             HHHHHHhhcCCC------CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          165 EFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       165 ~~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      ++..+...++..      ...+++|+=||.|.+...+.+.|. ..+.++|+++.+.+..+.++..     .+...++.+|
T Consensus        69 ~~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~-~~v~avE~d~~A~~ty~~N~~~-----~p~~~~~~~D  142 (482)
T 3me5_A           69 EFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGG-QCVFTSEWNKHAVRTYKANHYC-----DPATHHFNED  142 (482)
T ss_dssp             HHHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTE-EEEEEECCCHHHHHHHHHHSCC-----CTTTCEEESC
T ss_pred             HHHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHhccc-----CCCcceeccc
Confidence            345566555432      235899999999999999988875 3488999999888877765321     1344567788


Q ss_pred             CCCC
Q 018003          239 ISRL  242 (362)
Q Consensus       239 ~~~~  242 (362)
                      +..+
T Consensus       143 I~~i  146 (482)
T 3me5_A          143 IRDI  146 (482)
T ss_dssp             THHH
T ss_pred             hhhh
Confidence            7654

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=86.65  E-value=1.3  Score=40.05  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=59.1

Q ss_pred             CCCCCC-eEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CC--CCCCCC
Q 018003          174 KPVLGG-NIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SR--LPFASS  247 (362)
Q Consensus       174 ~~~~~~-~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~--~p~~~~  247 (362)
                      ...++. +||-+|+  |.|..+..+++.. +.++++++.+++.++.+++. .       ....+-..+. ..  .....+
T Consensus       145 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l-G-------a~~~i~~~~~~~~~~~~~~~~  215 (328)
T 1xa0_A          145 GLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVL-G-------AKEVLAREDVMAERIRPLDKQ  215 (328)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHT-T-------CSEEEECC---------CCSC
T ss_pred             CCCCCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHc-C-------CcEEEecCCcHHHHHHHhcCC
Confidence            445564 8999997  4588777777653 34899999998888877652 1       1111111111 00  011234


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+|+|+-.-.     .  ..+....+.|++||++++..
T Consensus       216 ~~d~vid~~g-----~--~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          216 RWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             CEEEEEECST-----T--TTHHHHHHTEEEEEEEEECS
T ss_pred             cccEEEECCc-----H--HHHHHHHHhhccCCEEEEEe
Confidence            6999875432     2  24778889999999988753

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=86.64  E-value=1.6  Score=39.34  Aligned_cols=96  Identities=11%  Similarity=0.087  Sum_probs=60.0

Q ss_pred             CCCCCC-eEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--CCC-CCCCC
Q 018003          174 KPVLGG-NIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SRL-PFASS  247 (362)
Q Consensus       174 ~~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~~-p~~~~  247 (362)
                      ...++. +||-+|+ | .|..+..+++.. +.++++++.+++.++.+++. .       ....+-..+.  ... ....+
T Consensus       146 ~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~l-G-------a~~v~~~~~~~~~~~~~~~~~  216 (330)
T 1tt7_A          146 GLSPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL-G-------ASEVISREDVYDGTLKALSKQ  216 (330)
T ss_dssp             TCCGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH-T-------CSEEEEHHHHCSSCCCSSCCC
T ss_pred             CcCCCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-C-------CcEEEECCCchHHHHHHhhcC
Confidence            445564 8999997 3 477777766652 24899999998878877653 1       1111111111  111 12234


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+|+|+-.-     ..  ..+.+..+.|++||++++..
T Consensus       217 ~~d~vid~~-----g~--~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          217 QWQGAVDPV-----GG--KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             CEEEEEESC-----CT--HHHHHHHTTEEEEEEEEECC
T ss_pred             CccEEEECC-----cH--HHHHHHHHhhcCCCEEEEEe
Confidence            689887543     33  36888999999999998754

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=86.58  E-value=6.9  Score=34.39  Aligned_cols=78  Identities=13%  Similarity=0.200  Sum_probs=55.2

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C----C----
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P----F----  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p----~----  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|++++.++...+.+.+.+...   ...++.++.+|+.+. .    +    
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~~v~~~~~~~   85 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNS---NHENVVFHQLDVTDPIATMSSLADFI   85 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT---TCCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEccCCCcHHHHHHHHHHH
Confidence            35688888877653   4555666665  9999999998877777766554   235799999999775 2    0    


Q ss_pred             --CCCcceEEEeccccc
Q 018003          245 --ASSSIDAVHAGAAIH  259 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~  259 (362)
                        ..+..|+++.+..+.
T Consensus        86 ~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           86 KTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHSSCCEEEECCCCC
T ss_pred             HHhCCCCCEEEECCccc
Confidence              014699999887654

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=86.55  E-value=0.43  Score=31.11  Aligned_cols=31  Identities=19%  Similarity=0.312  Sum_probs=21.9

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      +..||.||+.+....         ....+.|..|+..+..
T Consensus        18 ~~fCPkCG~~~~ma~---------~~dr~~C~kCgyt~~~   48 (55)
T 2k4x_A           18 HRFCPRCGPGVFLAE---------HADRYSCGRCGYTEFK   48 (55)
T ss_dssp             SCCCTTTTTTCCCEE---------CSSEEECTTTCCCEEC
T ss_pred             cccCcCCCCceeEec---------cCCEEECCCCCCEEEe
Confidence            567999998654322         1258999999987643

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=86.42  E-value=3.6  Score=38.87  Aligned_cols=97  Identities=21%  Similarity=0.172  Sum_probs=62.2

Q ss_pred             cCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe--cCCCC------
Q 018003          173 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA--DISRL------  242 (362)
Q Consensus       173 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~--d~~~~------  242 (362)
                      ....++.+||-.|+ | .|..+..+++.. +.++++++.+++.++.+++.        .....+...  |+...      
T Consensus       216 ~~~~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~~~~~~~~~l--------Ga~~~i~~~~~~~~~~~~~~~~  286 (447)
T 4a0s_A          216 AQMKQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSAQKEAAVRAL--------GCDLVINRAELGITDDIADDPR  286 (447)
T ss_dssp             TCCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT--------TCCCEEEHHHHTCCTTGGGCHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhc--------CCCEEEeccccccccccccccc
Confidence            45667999999997 4 477777777653 35999999999888888652        111111111  11000      


Q ss_pred             --------------CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          243 --------------PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 --------------p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                                    ......+|+|+..-.     .  ..++...+.|++||+++...
T Consensus       287 ~~~~~~~~~~~~v~~~~g~g~Dvvid~~G-----~--~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          287 RVVETGRKLAKLVVEKAGREPDIVFEHTG-----R--VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCSEEEECSC-----H--HHHHHHHHHSCTTCEEEESC
T ss_pred             ccchhhhHHHHHHHHHhCCCceEEEECCC-----c--hHHHHHHHHHhcCCEEEEEe
Confidence                          001246899986443     2  35788889999999998754

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=86.31  E-value=0.48  Score=32.59  Aligned_cols=32  Identities=31%  Similarity=0.572  Sum_probs=22.4

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....||.|+..-.. .        ...++++|..|+..+..
T Consensus        25 ~ky~C~fCgk~~vk-R--------~a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           25 ARYDCSFCGKKTVK-R--------GAAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             SCBCCSSCCSSCBS-B--------CSSSCBCCSSSCCCCCC
T ss_pred             cCccCCCCCCceeE-e--------cCCCeEECCCCCCEEeC
Confidence            45789999975221 1        22479999999987654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=86.24  E-value=4.7  Score=36.25  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=58.6

Q ss_pred             CCeEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          178 GGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      ..+|.=||+|.  +.++..+.+.|...+|+++|.+++.++.+.+.         .-+.-...|..+.  .-...|+|+..
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~---------G~~~~~~~~~~~~--~~~~aDvVila  101 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLS  101 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCTTGG--GGGCCSEEEEC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC---------CCcchhcCCHHHH--hhccCCEEEEe
Confidence            35899999986  45667777777545899999999888777652         1111122333320  12347888865


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      --..   ....+++++...|+||.+++
T Consensus       102 vp~~---~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A          102 SPVR---TFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             SCGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred             CCHH---HHHHHHHHHhhccCCCcEEE
Confidence            3322   23567888999999987654

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=86.19  E-value=0.31  Score=33.48  Aligned_cols=29  Identities=17%  Similarity=0.495  Sum_probs=21.9

Q ss_pred             cCCeeeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (362)
Q Consensus        68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~  106 (362)
                      ....+.|+.||..+....          ....+|+.||+
T Consensus        25 ~~v~Y~C~~CG~~~e~~~----------~d~irCp~CG~   53 (70)
T 1twf_L           25 ATLKYICAECSSKLSLSR----------TDAVRCKDCGH   53 (70)
T ss_dssp             CCCCEECSSSCCEECCCT----------TSTTCCSSSCC
T ss_pred             ceEEEECCCCCCcceeCC----------CCCccCCCCCc
Confidence            346688999999866543          24679999998

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=86.15  E-value=10  Score=32.17  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=55.3

Q ss_pred             CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------C
Q 018003          178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  244 (362)
Q Consensus       178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------~  244 (362)
                      ++++|=.|++.|.   ++..+++.|.  +|+.++.++..++...+.++..    ..++.++.+|+.+..          -
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~   78 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEK----GFKARGLVLNISDIESIQNFFAEIKA   78 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence            5678888876552   4566666675  9999999998888777776665    467899999997642          1


Q ss_pred             CCCcceEEEeccccc
Q 018003          245 ASSSIDAVHAGAAIH  259 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~  259 (362)
                      ..+..|+++.+..+.
T Consensus        79 ~~~~id~li~~Ag~~   93 (247)
T 3lyl_A           79 ENLAIDILVNNAGIT   93 (247)
T ss_dssp             TTCCCSEEEECCCCC
T ss_pred             HcCCCCEEEECCCCC
Confidence            124689999887654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=85.89  E-value=5.9  Score=34.14  Aligned_cols=78  Identities=15%  Similarity=0.152  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----  244 (362)
                      .++++|=.|++.|.   +...|++.|.  +|+.+|.+++.++...+.+...    ..++.++.+|+.+..     +    
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~   84 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQA----GGKAIGLECNVTDEQHREAVIKAAL   84 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHHH
Confidence            36788888887653   4566667776  8999999998888777776655    468899999997642     0    


Q ss_pred             -CCCcceEEEecccccC
Q 018003          245 -ASSSIDAVHAGAAIHC  260 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~h  260 (362)
                       .-+..|+++.+..+..
T Consensus        85 ~~~g~id~lv~nAg~~~  101 (256)
T 3gaf_A           85 DQFGKITVLVNNAGGGG  101 (256)
T ss_dssp             HHHSCCCEEEECCCCCC
T ss_pred             HHcCCCCEEEECCCCCC
Confidence             0136899998876543

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=85.85  E-value=9.1  Score=33.31  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCC-HHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C---
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.++.. .+..+...+.++..    ..++.++.+|+.+..     +   
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d~~~v~~~~~~~  103 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQA----GGRAVAIRADNRDAEAIEQAIRET  103 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhc----CCcEEEEECCCCCHHHHHHHHHHH
Confidence            46789999987653   4566666676  88888654 45555555555544    467889999997642     0   


Q ss_pred             --CCCcceEEEecccccCCC-----CH--------------HHHHHHHHhhccCCcEEEEEEE
Q 018003          245 --ASSSIDAVHAGAAIHCWS-----SP--------------STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        .-+..|+++.+..+....     ++              ..+++.+.+.++++|.++....
T Consensus       104 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          104 VEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence              113689999887653321     11              1356777788888898877644

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=85.50  E-value=3.4  Score=36.63  Aligned_cols=104  Identities=18%  Similarity=0.157  Sum_probs=67.5

Q ss_pred             CCCeEEEEcCc----cch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C--
Q 018003          177 LGGNIIDASCG----SGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--  244 (362)
Q Consensus       177 ~~~~vLDiGcG----~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~--  244 (362)
                      .++++|=.|++    .|. ++..|++.|.  +|+.++.++...+...+..+..     ..+.++.+|+.+..     +  
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~  101 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESL-----GVKLTVPCDVSDAESVDNMFKV  101 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHH-----TCCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc-----CCeEEEEcCCCCHHHHHHHHHH
Confidence            36789999975    343 5666677776  8999999976555555544443     34678899997642     0  


Q ss_pred             ---CCCcceEEEecccccCC---------CCH--------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 ---ASSSIDAVHAGAAIHCW---------SSP--------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 ---~~~~fD~V~~~~vl~h~---------~d~--------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                         .-+..|+++.+..+...         .++              ..+++.+.+.++.+|.++.....
T Consensus       102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~  170 (296)
T 3k31_A          102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYY  170 (296)
T ss_dssp             HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECG
T ss_pred             HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEeh
Confidence               01468999988765321         111              13456677777888988876543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=85.44  E-value=0.6  Score=43.47  Aligned_cols=100  Identities=17%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      ++.+|+=+|+|. |......+... +.+|+++|.+++.++.+++.+..       .+.....+...+.-.-...|+|+..
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~g~-------~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEFCG-------RIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTT-------SSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhcCC-------eeEeccCCHHHHHHHHcCCCEEEEC
Confidence            578999999975 55444444332 34999999999888777654211       1111111111111001257999874


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      -.......+.-+.++..+.+||||+++-.
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~g~~iV~v  267 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKPGAVLVDI  267 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCTTCEEEEG
T ss_pred             CCcCCCCCcceecHHHHhcCCCCcEEEEE
Confidence            32221112222346677889999988754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=85.30  E-value=5.9  Score=35.00  Aligned_cols=104  Identities=16%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C--
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS--ENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F--  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~--  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.++.+  ....+...+.++..    ..++.++.+|+.+..     +  
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~  121 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEEC----GRKAVLLPGDLSDESFARSLVHK  121 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHT----TCCEEECCCCTTSHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHc----CCcEEEEEecCCCHHHHHHHHHH
Confidence            36789999987653   4556666676  89998886  33445555544444    467888999987642     0  


Q ss_pred             ---CCCcceEEEecccccCC-C-----CH--------------HHHHHHHHhhccCCcEEEEEEE
Q 018003          245 ---ASSSIDAVHAGAAIHCW-S-----SP--------------STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       245 ---~~~~fD~V~~~~vl~h~-~-----d~--------------~~~l~~i~r~LkpgG~li~~~~  286 (362)
                         .-+..|+++.+..+... .     ++              ..+++.+.+.++++|.++....
T Consensus       122 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          122 AREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence               01468999988765331 1     11              1346677778888898877644

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=85.28  E-value=9  Score=32.99  Aligned_cols=79  Identities=19%  Similarity=0.211  Sum_probs=56.4

Q ss_pred             CCCeEEEEcC-ccc--h-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C---
Q 018003          177 LGGNIIDASC-GSG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  244 (362)
Q Consensus       177 ~~~~vLDiGc-G~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---  244 (362)
                      .++++|=.|+ |.|  . +...+++.|.  +|+.++.+++.++...+.+...   ...++.++.+|+.+..     +   
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADL---GLGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT---CSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhc---CCCceEEEEeCCCCHHHHHHHHHHH
Confidence            3678999987 554  3 4566777776  8999999998888777776544   2358999999997642     0   


Q ss_pred             --CCCcceEEEecccccC
Q 018003          245 --ASSSIDAVHAGAAIHC  260 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~h  260 (362)
                        ..+..|+++.+..+..
T Consensus        96 ~~~~g~id~li~~Ag~~~  113 (266)
T 3o38_A           96 VEKAGRLDVLVNNAGLGG  113 (266)
T ss_dssp             HHHHSCCCEEEECCCCCC
T ss_pred             HHHhCCCcEEEECCCcCC
Confidence              0136899998876543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=85.24  E-value=9.8  Score=33.58  Aligned_cols=77  Identities=18%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCC------------HHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.+|.+            ++.++...+.+...    ..++.++.+|+.+
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~  100 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL----GRRIIASQVDVRD  100 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhc----CCceEEEECCCCC
Confidence            46789999987763   4566666776  99999987            66666665555554    4688999999976


Q ss_pred             CC-----C-----CCCcceEEEeccccc
Q 018003          242 LP-----F-----ASSSIDAVHAGAAIH  259 (362)
Q Consensus       242 ~p-----~-----~~~~fD~V~~~~vl~  259 (362)
                      ..     +     .-+..|+++.+..+.
T Consensus       101 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~  128 (299)
T 3t7c_A          101 FDAMQAAVDDGVTQLGRLDIVLANAALA  128 (299)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence            42     0     114689999876643

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=85.13  E-value=0.78  Score=42.38  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ++.+||=+|+|. |.....++.. |.  +|+++|.+++.++.+++.....       +.....+...+.-.-..+|+|+.
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~DvVI~  236 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSR-------VELLYSNSAEIETAVAEADLLIG  236 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG-------SEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCce-------eEeeeCCHHHHHHHHcCCCEEEE
Confidence            347999999975 5544444443 43  9999999998888877654322       21221111111000125899987


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .-....-..|..+.++..+.++|||+++-...
T Consensus       237 ~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          237 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            55443322222224556778999998876543

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=85.10  E-value=6.7  Score=34.13  Aligned_cols=79  Identities=16%  Similarity=0.204  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      .|+++|=-|++.|.   .+..|++.|.  +|+.+|.+++.++...+.+...    ..++..+.+|+.+..          
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   81 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRK----GYDAHGVAFDVTDELAIEAAFSKLD   81 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHT----TCCEEECCCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            46788888877764   4566666776  9999999999888888777766    567888999987632          


Q ss_pred             CCCCcceEEEecccccCC
Q 018003          244 FASSSIDAVHAGAAIHCW  261 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~  261 (362)
                      -.-+..|+++.+..+.+.
T Consensus        82 ~~~G~iDiLVNNAG~~~~   99 (255)
T 4g81_D           82 AEGIHVDILINNAGIQYR   99 (255)
T ss_dssp             HTTCCCCEEEECCCCCCC
T ss_pred             HHCCCCcEEEECCCCCCC
Confidence            123679999988766543

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=84.93  E-value=4.5  Score=34.84  Aligned_cols=102  Identities=16%  Similarity=0.099  Sum_probs=63.6

Q ss_pred             CCeEEEEcCccch---HHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC---
Q 018003          178 GGNIIDASCGSGL---FSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  245 (362)
Q Consensus       178 ~~~vLDiGcG~G~---~~~~l~~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~---  245 (362)
                      +++||=.|++.|.   ++..|++ .|.  +|++++.++...+...+.+...    ..++.++.+|+.+..     +.   
T Consensus         4 ~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dl~~~~~~~~~~~~~~   77 (276)
T 1wma_A            4 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFLR   77 (276)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhc----CCeeEEEECCCCCHHHHHHHHHHHH
Confidence            5678877755432   3344455 555  9999999987777666666544    357889999997642     00   


Q ss_pred             --CCcceEEEecccccCCC----C-H--------------HHHHHHHHhhccCCcEEEEEE
Q 018003          246 --SSSIDAVHAGAAIHCWS----S-P--------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       246 --~~~fD~V~~~~vl~h~~----d-~--------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                        .+.+|+|+.+.......    . .              ..+++.+.+.++++|.++...
T Consensus        78 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           78 KEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence              13689999776543211    1 1              134566667777778777654

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=84.74  E-value=8.2  Score=33.57  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=54.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeC-------------CHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDY-------------SENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~-------------s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      .++++|=.|++.|.   .+..|++.|.  +|+.+|.             +++.++...+.+...    ..++.++.+|+.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~   83 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA----NRRIVAAVVDTR   83 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT----TCCEEEEECCTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc----CCeEEEEECCCC
Confidence            36788988987653   4566666776  9999998             666666666655554    467899999997


Q ss_pred             CCC-----CC-----CCcceEEEecccccC
Q 018003          241 RLP-----FA-----SSSIDAVHAGAAIHC  260 (362)
Q Consensus       241 ~~p-----~~-----~~~fD~V~~~~vl~h  260 (362)
                      +..     +.     -+..|+++.+..+..
T Consensus        84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~  113 (277)
T 3tsc_A           84 DFDRLRKVVDDGVAALGRLDIIVANAGVAA  113 (277)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            642     11     146899998876543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=84.26  E-value=7.6  Score=33.54  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCc----cch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------
Q 018003          177 LGGNIIDASCG----SGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------  243 (362)
Q Consensus       177 ~~~~vLDiGcG----~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------  243 (362)
                      .++++|=-|++    -|. .+..|++.|.  +|+.++.+++.++.+.+.+++.   ...++.++.+|+.+..        
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA--KLVFTYRKERSRKELEKLLEQL---NQPEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHGGG---TCSSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc---CCCcEEEEEccCCCHHHHHHHHHH
Confidence            47788988853    443 4667777776  9999999998888887777664   2357888999987632        


Q ss_pred             --CCCCcceEEEecccccCCC---------CHH--------------HHHHHHHhhccCCcEEEEEEEc
Q 018003          244 --FASSSIDAVHAGAAIHCWS---------SPS--------------TGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~---------d~~--------------~~l~~i~r~LkpgG~li~~~~~  287 (362)
                        -.-+..|+++.+..+....         +.+              ...+...+.++.+|.++.....
T Consensus        80 ~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~  148 (256)
T 4fs3_A           80 IGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYL  148 (256)
T ss_dssp             HHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECG
T ss_pred             HHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecc
Confidence              1125789999875542211         111              1234455677889998876543

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=84.09  E-value=0.47  Score=33.59  Aligned_cols=32  Identities=25%  Similarity=0.638  Sum_probs=22.6

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.||.|+..-.. .        ...++++|..|+..+..
T Consensus        34 ~ky~CpfCGk~~vk-R--------~a~GIW~C~kCg~~~AG   65 (83)
T 3j21_i           34 QKHTCPVCGRKAVK-R--------ISTGIWQCQKCGATFAG   65 (83)
T ss_dssp             SCBCCSSSCSSCEE-E--------EETTEEEETTTCCEEEC
T ss_pred             cccCCCCCCCceeE-e--------cCcCeEEcCCCCCEEeC
Confidence            45789999975211 1        22479999999987655

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=84.07  E-value=3.5  Score=35.70  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEE-eCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C---
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVAL-DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F---  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~---  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.+ +.+++..+...+.++..    ..++.++.+|+.+..     +   
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~   80 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKL----GRSALAIKADLTNAAEVEAAISAA   80 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTT----TSCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCceEEEEcCCCCHHHHHHHHHHH
Confidence            36789989987653   4556666676  88887 66776666666666554    467889999997642     0   


Q ss_pred             --CCCcceEEEeccccc-C---CC--CH--------------HHHHHHHHhhccCCcEEEEEE
Q 018003          245 --ASSSIDAVHAGAAIH-C---WS--SP--------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~-h---~~--d~--------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                        .-+..|+++.+.... .   +.  ++              ..+++.+.+.++++|.++...
T Consensus        81 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  143 (259)
T 3edm_A           81 ADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS  143 (259)
T ss_dssp             HHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence              014689999876533 1   11  11              134566667777788877654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=83.91  E-value=7.5  Score=34.20  Aligned_cols=100  Identities=17%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      .|+.+|=-|++.|.   .+..|++.|.  +|+.+|.+++.++.+.+.+       ..+...+.+|+.+..          
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga--~V~i~~r~~~~l~~~~~~~-------g~~~~~~~~Dv~~~~~v~~~~~~~~   98 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA--RVFITGRRKDVLDAAIAEI-------GGGAVGIQADSANLAELDRLYEKVK   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHc-------CCCeEEEEecCCCHHHHHHHHHHHH
Confidence            46788888987764   4566677776  9999999998887766544       346778889987642          


Q ss_pred             CCCCcceEEEecccccCCCC-----H--------------HHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSS-----P--------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d-----~--------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      -.-+..|+++.+..+.....     +              -.+.+.+.+.|+.+|.++...
T Consensus        99 ~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis  159 (273)
T 4fgs_A           99 AEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG  159 (273)
T ss_dssp             HHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence            11257899998876543311     1              144677778888888877654

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=83.89  E-value=9.3  Score=34.98  Aligned_cols=93  Identities=8%  Similarity=-0.003  Sum_probs=58.9

Q ss_pred             CCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CCCCc
Q 018003          176 VLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSS  248 (362)
Q Consensus       176 ~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~~~~  248 (362)
                      .++.+||=+|+ | .|..+..+++.. +.+|+++. +++.++.+++.         .-..++...-.++.     ...+.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~l---------Ga~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKSR---------GAEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHHT---------TCSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHHc---------CCcEEEECCCchHHHHHHHHccCC
Confidence            67889999998 3 688888887763 34888885 78777777662         11122222111110     12345


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhc-cCCcEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTT  285 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpgG~li~~~  285 (362)
                      +|+|+-.     ...+ ..+....+.| ++||+++...
T Consensus       232 ~d~v~d~-----~g~~-~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDC-----ITNV-ESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEES-----SCSH-HHHHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEEC-----CCch-HHHHHHHHHhhcCCCEEEEEe
Confidence            8998743     3333 4577788888 6999998753

>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}

Probab=83.78  E-value=0.63  Score=39.31  Aligned_cols=44  Identities=27%  Similarity=0.499  Sum_probs=28.0

Q ss_pred             ccccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           65 ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        65 ~~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      ..-..-.+.||.|+..+...+........+....+.|++|+..+
T Consensus        16 r~c~~l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~   59 (206)
T 3flo_B           16 KDTVTLELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF   59 (206)
T ss_dssp             TTCCCEEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred             CcCceeEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence            33445568899999866555432221222566789999999754

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=83.61  E-value=6.9  Score=34.21  Aligned_cols=77  Identities=13%  Similarity=0.122  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---------  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---------  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.+|.+++.++...+.+...    ..++.++.+|+.+..-         
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~~~~~~~~~~  105 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIAS----GGTAQELAGDLSEAGAGTDLIERAE  105 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHT----TCCEEEEECCTTSTTHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhc----CCeEEEEEecCCCHHHHHHHHHHHH
Confidence            36688888877653   4555666676  9999999987777776666554    4678999999976530         


Q ss_pred             CCCcceEEEeccccc
Q 018003          245 ASSSIDAVHAGAAIH  259 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~  259 (362)
                      ..+..|+++.+..+.
T Consensus       106 ~~g~iD~lvnnAg~~  120 (275)
T 4imr_A          106 AIAPVDILVINASAQ  120 (275)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HhCCCCEEEECCCCC
Confidence            014689999887653

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=83.58  E-value=0.55  Score=32.32  Aligned_cols=30  Identities=20%  Similarity=0.479  Sum_probs=21.6

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      .+.|| |+..+....         ......|+ ||......
T Consensus         4 vv~C~-C~~~~~~~~---------~~kT~~C~-CG~~~~~~   33 (71)
T 1gh9_A            4 IFRCD-CGRALYSRE---------GAKTRKCV-CGRTVNVK   33 (71)
T ss_dssp             EEEET-TSCCEEEET---------TCSEEEET-TTEEEECC
T ss_pred             EEECC-CCCEEEEcC---------CCcEEECC-CCCeeeec
Confidence            46899 998765544         12578999 99887663

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=83.56  E-value=6.8  Score=34.68  Aligned_cols=80  Identities=24%  Similarity=0.330  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC---
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA---  245 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~---  245 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.++.+++.++...+.+... +....++.++.+|+.+..     +.   
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~~~~~Dv~d~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKA-GVPAEKINAVVADVTEASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT-TCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc-CCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            35678888876552   3455566665  9999999988777666655443 000116889999997642     10   


Q ss_pred             --CCcceEEEeccccc
Q 018003          246 --SSSIDAVHAGAAIH  259 (362)
Q Consensus       246 --~~~fD~V~~~~vl~  259 (362)
                        -+.+|+++.+..+.
T Consensus       102 ~~~g~iD~lvnnAG~~  117 (297)
T 1xhl_A          102 AKFGKIDILVNNAGAN  117 (297)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HhcCCCCEEEECCCcC
Confidence              13689999877643

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=83.37  E-value=9.8  Score=33.23  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=53.9

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCC----------------HHHHHHHHHHHhhcCCCCCCCEEEEEe
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS----------------ENMLKQCYEFVQQESNFPKENFLLVRA  237 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s----------------~~~~~~a~~~~~~~~~~~~~~~~~~~~  237 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.+|.+                ++.++...+.+...    ..++.++.+
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   83 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH----NRRIVTAEV   83 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT----TCCEEEEEC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhc----CCceEEEEc
Confidence            46789999987763   4566666776  99999987                56666665555544    467899999


Q ss_pred             cCCCCC-----C-----CCCcceEEEeccccc
Q 018003          238 DISRLP-----F-----ASSSIDAVHAGAAIH  259 (362)
Q Consensus       238 d~~~~p-----~-----~~~~fD~V~~~~vl~  259 (362)
                      |+.+..     +     .-+..|+++.+..+.
T Consensus        84 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~  115 (286)
T 3uve_A           84 DVRDYDALKAAVDSGVEQLGRLDIIVANAGIG  115 (286)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence            997642     0     114689999887653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=83.36  E-value=0.9  Score=42.08  Aligned_cols=99  Identities=14%  Similarity=0.189  Sum_probs=53.4

Q ss_pred             CCCeEEEEcCcc-chHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          177 LGGNIIDASCGS-GLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ++.+|+=+|+|. |......+ ..|  .+|+++|.+++.++.+.+.+.       ..+.....+...+.-.-..+|+|+.
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~G--a~V~~~d~~~~~~~~~~~~~g-------~~~~~~~~~~~~l~~~~~~~DvVi~  235 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMG--AQVTILDVNHKRLQYLDDVFG-------GRVITLTATEANIKKSVQHADLLIG  235 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHHHTT-------TSEEEEECCHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEECCHHHHHHHHHhcC-------ceEEEecCCHHHHHHHHhCCCEEEE
Confidence            467999999964 44433333 334  499999999987777655321       1221111111111100125799886


Q ss_pred             cccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          255 GAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       255 ~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      .-.......+..+.+++.+.+||||+++..
T Consensus       236 ~~g~~~~~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          236 AVLVPGAKAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             CCC-------CCSCHHHHTTSCTTCEEEEC
T ss_pred             CCCCCccccchhHHHHHHHhhcCCCEEEEE
Confidence            544321111112356777888999987754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=83.34  E-value=8.1  Score=33.57  Aligned_cols=102  Identities=20%  Similarity=0.228  Sum_probs=66.7

Q ss_pred             CCeEEEEcCccch---HHHHHHHhCCCCEEEEEe-CCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003          178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALD-YSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (362)
Q Consensus       178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD-~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----  244 (362)
                      ++++|=.|++.|.   .+..|++.|.  +|+.++ .++...+...+.+...    ..++.++.+|+.+..     +    
T Consensus        27 ~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~v~~~~~~~~  100 (267)
T 3u5t_A           27 NKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAA----GGKALTAQADVSDPAAVRRLFATAE  100 (267)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            6788988887663   4566677776  888774 4555566555555554    467889999997642     0    


Q ss_pred             -CCCcceEEEecccccCCC-----CH--------------HHHHHHHHhhccCCcEEEEEE
Q 018003          245 -ASSSIDAVHAGAAIHCWS-----SP--------------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~h~~-----d~--------------~~~l~~i~r~LkpgG~li~~~  285 (362)
                       .-+..|+++.+..+....     ++              ..+++.+.+.++++|.++...
T Consensus       101 ~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is  161 (267)
T 3u5t_A          101 EAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS  161 (267)
T ss_dssp             HHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence             014789999887654321     11              134667777788888887654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=83.30  E-value=10  Score=32.71  Aligned_cols=105  Identities=16%  Similarity=0.295  Sum_probs=64.0

Q ss_pred             CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC----
Q 018003          178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA----  245 (362)
Q Consensus       178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~----  245 (362)
                      ++++|=.|++.|.   +...|++.|.  +|+.++.+++..+...+.+...  ....++.++.+|+.+..     +.    
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQ--FEPQKTLFIQCDVADQQQLRDTFRKVVD   82 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT--SCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhh--cCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence            5688888876542   4555666675  9999999987666555544331  01246888999987642     00    


Q ss_pred             -CCcceEEEecccccCCCCHHH-----------HHHHHHhhccC-----CcEEEEEEE
Q 018003          246 -SSSIDAVHAGAAIHCWSSPST-----------GVAEISRVLRP-----GGVFVGTTY  286 (362)
Q Consensus       246 -~~~fD~V~~~~vl~h~~d~~~-----------~l~~i~r~Lkp-----gG~li~~~~  286 (362)
                       -+..|+++.+.......+...           ..+.+.+.++.     +|.++....
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS  140 (267)
T 2gdz_A           83 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  140 (267)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCC
Confidence             135799998876544444432           23445555543     577765543

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=83.22  E-value=5.9  Score=34.20  Aligned_cols=77  Identities=18%  Similarity=0.216  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCccc---hHHHHHHHhCCCCEEEEEeC-CHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC--
Q 018003          177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDY-SENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA--  245 (362)
Q Consensus       177 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~--  245 (362)
                      .+++||=.|++.|   .++..|++.|.  +|++++. ++..++...+.+...    ..++.++.+|+.+..     +.  
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~----~~~~~~~~~D~~~~~~~~~~~~~~   93 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDKA   93 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            3568888876543   23455555665  8999998 776666555555443    357889999987642     10  


Q ss_pred             ---CCcceEEEeccccc
Q 018003          246 ---SSSIDAVHAGAAIH  259 (362)
Q Consensus       246 ---~~~fD~V~~~~vl~  259 (362)
                         -+.+|+|+.+....
T Consensus        94 ~~~~~~~d~vi~~Ag~~  110 (274)
T 1ja9_A           94 VSHFGGLDFVMSNSGME  110 (274)
T ss_dssp             HHHHSCEEEEECCCCCC
T ss_pred             HHHcCCCCEEEECCCCC
Confidence               13689999876543

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=82.90  E-value=0.42  Score=33.05  Aligned_cols=32  Identities=31%  Similarity=0.654  Sum_probs=22.5

Q ss_pred             CCeeeCCCCCCC-cccccCCCCccccccCCceecCccCccccc
Q 018003           69 KNVLACPICYKP-LTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        69 ~~~l~CP~C~~~-l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      -....||.|+.. +...          ..+++.|..|+..+..
T Consensus        25 ~~ky~C~fCgk~~vkR~----------a~GIW~C~~C~~~~AG   57 (73)
T 1ffk_W           25 KKKYKCPVCGFPKLKRA----------STSIWVCGHCGYKIAG   57 (73)
T ss_pred             ccCccCCCCCCceeEEE----------EeEEEECCCCCcEEEC
Confidence            345789999873 2221          2378999999987655

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=82.42  E-value=5.4  Score=34.89  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=56.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----  244 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.++.+++.++...+.+...    ..++.++.+|+.+..     +    
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~Dl~d~~~v~~~~~~~~  104 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGV----GGKALPIRCDVTQPDQVRGMLDQMT  104 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence            46789988887653   4566666676  9999999988877777766655    457889999997642     0    


Q ss_pred             -CCCcceEEEecccccC
Q 018003          245 -ASSSIDAVHAGAAIHC  260 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~h  260 (362)
                       .-+..|+++.+..+..
T Consensus       105 ~~~g~iD~lvnnAg~~~  121 (276)
T 3r1i_A          105 GELGGIDIAVCNAGIVS  121 (276)
T ss_dssp             HHHSCCSEEEECCCCCC
T ss_pred             HHcCCCCEEEECCCCCC
Confidence             0136899998876544

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=82.24  E-value=12  Score=32.33  Aligned_cols=78  Identities=18%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh-cCCCCCCCEEEEEecCCCCCC--------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-ESNFPKENFLLVRADISRLPF--------  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~~~~~d~~~~p~--------  244 (362)
                      .++++|=.|++.|.   .+..|++.|.  +|+.++.+++.++.+.+.+.. .    ..++.++.+|+.+..-        
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~   92 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF----GTDVHTVAIDLAEPDAPAELARRA   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH----CCCEEEEECCTTSTTHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHH
Confidence            36688888877653   4556666676  899999999888777666654 3    4578999999977531        


Q ss_pred             --CCCcceEEEecccccC
Q 018003          245 --ASSSIDAVHAGAAIHC  260 (362)
Q Consensus       245 --~~~~fD~V~~~~vl~h  260 (362)
                        .-+..|+++.+..+.+
T Consensus        93 ~~~~g~id~lv~nAg~~~  110 (266)
T 4egf_A           93 AEAFGGLDVLVNNAGISH  110 (266)
T ss_dssp             HHHHTSCSEEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCcCC
Confidence              0136899998766543

>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}

Probab=82.20  E-value=1.1  Score=30.03  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=24.3

Q ss_pred             cCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        68 ~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....+.|..|+....+..          ...++|+.||+-...
T Consensus        18 ~~v~Y~C~~Cg~~~~l~~----------~~~iRC~~CG~RILy   50 (63)
T 3h0g_L           18 ATMIYLCADCGARNTIQA----------KEVIRCRECGHRVMY   50 (63)
T ss_dssp             -CCCCBCSSSCCBCCCCS----------SSCCCCSSSCCCCCB
T ss_pred             CCeEEECCCCCCeeecCC----------CCceECCCCCcEEEE
Confidence            356799999999876543          257999999975544

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=82.20  E-value=8.9  Score=33.29  Aligned_cols=79  Identities=19%  Similarity=0.212  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCC------------HHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS------------ENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.+|.+            ++.++...+.+...    ..++.++.+|+.+
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~   85 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDI----GSRIVARQADVRD   85 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH----TCCEEEEECCTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhc----CCeEEEEeCCCCC
Confidence            46789999987653   4566667776  89999987            66666665555554    4689999999976


Q ss_pred             CC-----CC-----CCcceEEEecccccCC
Q 018003          242 LP-----FA-----SSSIDAVHAGAAIHCW  261 (362)
Q Consensus       242 ~p-----~~-----~~~fD~V~~~~vl~h~  261 (362)
                      ..     +.     -+..|+++.+..+...
T Consensus        86 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~  115 (278)
T 3sx2_A           86 RESLSAALQAGLDELGRLDIVVANAGIAPM  115 (278)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            42     10     1468999988776543

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=82.11  E-value=11  Score=32.75  Aligned_cols=78  Identities=19%  Similarity=0.189  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeC-------------CHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDY-------------SENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~-------------s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      .++++|=.|++.|.   ++..|++.|.  +|+.+|.             +++.++...+.+...    ..++.++.+|+.
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~   87 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQ----GRKALTRVLDVR   87 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT----TCCEEEEECCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhc----CCeEEEEEcCCC
Confidence            46789999987653   4566667776  9999997             677777666666554    467889999997


Q ss_pred             CCC-----C-----CCCcceEEEecccccC
Q 018003          241 RLP-----F-----ASSSIDAVHAGAAIHC  260 (362)
Q Consensus       241 ~~p-----~-----~~~~fD~V~~~~vl~h  260 (362)
                      +..     +     .-+..|+++.+..+.+
T Consensus        88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~  117 (280)
T 3pgx_A           88 DDAALRELVADGMEQFGRLDVVVANAGVLS  117 (280)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEECCCCCC
Confidence            642     0     1146899998876543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=82.09  E-value=2.8  Score=37.82  Aligned_cols=68  Identities=24%  Similarity=0.365  Sum_probs=51.7

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEecc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGA  256 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~  256 (362)
                      .+|+|+=||.|.+..-+.+.|. ..+.++|+++.+.+..+.+.        + -.++.+|+.++... -..+|+++...
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~-~~v~a~e~d~~a~~ty~~N~--------~-~~~~~~DI~~i~~~~~~~~D~l~ggp   69 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNH--------S-AKLIKGDISKISSDEFPKCDGIIGGP   69 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC-EEEEEEECCTTTHHHHHHHC--------C-SEEEESCGGGCCGGGSCCCSEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHHC--------C-CCcccCChhhCCHhhCCcccEEEecC
Confidence            3799999999999999999885 35679999998888777652        2 35788999776422 24689998653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=81.97  E-value=14  Score=27.76  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             CCeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceE
Q 018003          178 GGNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  251 (362)
Q Consensus       178 ~~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~  251 (362)
                      +.+|+=+|+|. |. ++..+.+.+.  +|+++|.+++.++..++.         .++.++.+|.....    .....+|+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~~~~~---------~~~~~~~~d~~~~~~l~~~~~~~~d~   72 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADM   72 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHh---------cCcEEEEcCCCCHHHHHHcCcccCCE
Confidence            35789999875 43 3344455554  899999998876655542         24556777765321    11245898


Q ss_pred             EEecccccCCCCH--HHHHHHHHhhccCCcEEEE
Q 018003          252 VHAGAAIHCWSSP--STGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       252 V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~  283 (362)
                      |+..-     ++.  ...+.++.+.++++ .++.
T Consensus        73 vi~~~-----~~~~~~~~~~~~~~~~~~~-~ii~  100 (140)
T 1lss_A           73 YIAVT-----GKEEVNLMSSLLAKSYGIN-KTIA  100 (140)
T ss_dssp             EEECC-----SCHHHHHHHHHHHHHTTCC-CEEE
T ss_pred             EEEee-----CCchHHHHHHHHHHHcCCC-EEEE
Confidence            88653     233  23455666667775 4444

>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X

Probab=81.94  E-value=0.86  Score=28.24  Aligned_cols=30  Identities=23%  Similarity=0.420  Sum_probs=19.4

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~  106 (362)
                      ..+.|-.||..+...+-+       .-...+|+-||.
T Consensus         2 ~iY~C~rCg~~fs~~el~-------~lP~IrCpyCGy   31 (48)
T 4ayb_P            2 AVYRCGKCWKTFTDEQLK-------VLPGVRCPYCGY   31 (48)
T ss_dssp             ---CCCCTTTTCCCCCSC-------CCSSSCCTTTCC
T ss_pred             cEEEeeccCCCccHHHHh-------hCCCcccCccCc
Confidence            467899999987655422       125689999995

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=81.79  E-value=0.62  Score=29.68  Aligned_cols=40  Identities=18%  Similarity=0.390  Sum_probs=22.6

Q ss_pred             CeeeCCCCCCCccc-ccCCCCccccccCCceecCccCcccc
Q 018003           70 NVLACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTYS  109 (362)
Q Consensus        70 ~~l~CP~C~~~l~~-~~~~~~~~~~~~~~~l~C~~C~~~~~  109 (362)
                      ....||.|+..-.. ......+.++.+-..+.|.+|++.+.
T Consensus         8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~   48 (50)
T 1tfi_A            8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK   48 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred             CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence            34679999984321 01112223333445689999998653

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=81.78  E-value=18  Score=31.10  Aligned_cols=79  Identities=13%  Similarity=0.126  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----  244 (362)
                      .++++|=.|++.|.   ++..+++.|.  +|+.++.+++.++...+.+...  ....++.++.+|+.+..     +    
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~   82 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQR--FPGARLFASVCDVLDALQVRAFAEACE   82 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH--STTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--cCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence            36788988987653   4566666676  8999999998888777766552  11235889999997642     0    


Q ss_pred             -CCCcceEEEeccccc
Q 018003          245 -ASSSIDAVHAGAAIH  259 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~  259 (362)
                       .-+..|+++.+..+.
T Consensus        83 ~~~g~id~lvnnAg~~   98 (265)
T 3lf2_A           83 RTLGCASILVNNAGQG   98 (265)
T ss_dssp             HHHCSCSEEEECCCCC
T ss_pred             HHcCCCCEEEECCCCC
Confidence             114689999887653

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=81.57  E-value=9.1  Score=32.90  Aligned_cols=104  Identities=12%  Similarity=0.116  Sum_probs=65.7

Q ss_pred             CCCCeEEEEcCc--cc--h-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C-
Q 018003          176 VLGGNIIDASCG--SG--L-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-  244 (362)
Q Consensus       176 ~~~~~vLDiGcG--~G--~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~-  244 (362)
                      .++++||=.|++  .|  . ++..|++.|.  +|+.++.+....+..++..+..     .++.++.+|+.+..     + 
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~   84 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEF-----GSELVFPCDVADDAQIDALFA   84 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHT-----TCCCEEECCTTCHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHc-----CCcEEEECCCCCHHHHHHHHH
Confidence            357799999975  33  2 3455666665  9999998865555444443332     45788999997642     0 


Q ss_pred             ----CCCcceEEEecccccCC----------CCH--------------HHHHHHHHhhccCCcEEEEEEE
Q 018003          245 ----ASSSIDAVHAGAAIHCW----------SSP--------------STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       245 ----~~~~fD~V~~~~vl~h~----------~d~--------------~~~l~~i~r~LkpgG~li~~~~  286 (362)
                          .-+..|+++.+..+...          .++              ..+++.+.+.++++|.++....
T Consensus        85 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           85 SLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence                12468999987765331          111              1345666777777888776654

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=81.38  E-value=0.57  Score=34.45  Aligned_cols=32  Identities=34%  Similarity=0.605  Sum_probs=22.6

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ..+.||.|+..-...         ...++|+|..|+..+..
T Consensus        35 aky~CpfCgk~~vKR---------~a~GIW~C~kCg~~~AG   66 (103)
T 4a17_Y           35 AKYGCPFCGKVAVKR---------AAVGIWKCKPCKKIIAG   66 (103)
T ss_dssp             SCEECTTTCCEEEEE---------EETTEEEETTTTEEEEC
T ss_pred             cCCCCCCCCCceeee---------cCcceEEcCCCCCEEeC
Confidence            458899998752111         22479999999987665

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=81.15  E-value=4.1  Score=39.20  Aligned_cols=89  Identities=11%  Similarity=0.016  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      ..+|.+|+=+|+|. |......++.. +.+|+++|.++..++.+++.          .+..  .++.+.   -...|+|+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~~----------Ga~~--~~l~e~---l~~aDvVi  334 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMME----------GFDV--VTVEEA---IGDADIVV  334 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCEE--CCHHHH---GGGCSEEE
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc----------CCEE--ecHHHH---HhCCCEEE
Confidence            34688999999986 55544444432 34999999999877776652          2222  222221   13579988


Q ss_pred             ecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          254 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      ..-.-.++-+     .+..+.+||||+++..
T Consensus       335 ~atgt~~~i~-----~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          335 TATGNKDIIM-----LEHIKAMKDHAILGNI  360 (494)
T ss_dssp             ECSSSSCSBC-----HHHHHHSCTTCEEEEC
T ss_pred             ECCCCHHHHH-----HHHHHhcCCCcEEEEe
Confidence            7533233211     3566778999988754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=81.07  E-value=15  Score=31.43  Aligned_cols=74  Identities=18%  Similarity=0.287  Sum_probs=51.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C----
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F----  244 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~----  244 (362)
                      .++++|=.|++.|.   +...|++.|.  +|+.+|.+++.++...+.+       ..++.++.+|+.+..     +    
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~v~~~~~~~~   77 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEI-------GPAAYAVQMDVTRQDSIDAAIAATV   77 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CTTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHh-------CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            36788988877652   4556666776  9999999988776665543       346788999997642     0    


Q ss_pred             -CCCcceEEEeccccc
Q 018003          245 -ASSSIDAVHAGAAIH  259 (362)
Q Consensus       245 -~~~~fD~V~~~~vl~  259 (362)
                       .-+..|+++.+..+.
T Consensus        78 ~~~g~id~lv~~Ag~~   93 (259)
T 4e6p_A           78 EHAGGLDILVNNAALF   93 (259)
T ss_dssp             HHSSSCCEEEECCCCC
T ss_pred             HHcCCCCEEEECCCcC
Confidence             123689999887653

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=80.81  E-value=7.4  Score=33.40  Aligned_cols=75  Identities=19%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             CCeEEEEcCccc---hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C-----
Q 018003          178 GGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-----  244 (362)
Q Consensus       178 ~~~vLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~-----  244 (362)
                      ++++|=.|++.|   .+...|++.|.  +|+.++.+++.++...+.+...    ..++.++.+|+.+..     +     
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~   75 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQA----GGHAVAVKVDVSDRDQVFAAVEQARK   75 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc----CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            357788887654   24455666675  9999999987776666555443    356888999987642     0     


Q ss_pred             CCCcceEEEecccc
Q 018003          245 ASSSIDAVHAGAAI  258 (362)
Q Consensus       245 ~~~~fD~V~~~~vl  258 (362)
                      .-+.+|+++.+..+
T Consensus        76 ~~g~id~lv~nAg~   89 (256)
T 1geg_A           76 TLGGFDVIVNNAGV   89 (256)
T ss_dssp             HTTCCCEEEECCCC
T ss_pred             HhCCCCEEEECCCC
Confidence            01468999987654

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=80.80  E-value=9.5  Score=35.74  Aligned_cols=93  Identities=17%  Similarity=0.261  Sum_probs=63.3

Q ss_pred             CCeEEEEcCcc-chH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceE
Q 018003          178 GGNIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDA  251 (362)
Q Consensus       178 ~~~vLDiGcG~-G~~-~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~  251 (362)
                      ..+|+=+|+|. |.. +..|.+.+.  .|+++|.+++.++.+++          ..+.++.+|..+..    ..-...|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~~~~----------~g~~vi~GDat~~~~L~~agi~~A~~   71 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV--KMVVLDHDPDHIETLRK----------FGMKVFYGDATRMDLLESAGAAKAEV   71 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC--CEEEEECCHHHHHHHHH----------TTCCCEESCTTCHHHHHHTTTTTCSE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHh----------CCCeEEEcCCCCHHHHHhcCCCccCE
Confidence            45789999875 443 334444454  89999999999988875          25667899987742    12346788


Q ss_pred             EEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEc
Q 018003          252 VHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       252 V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |++.-     +++.  ..+....+.+.|...++.....
T Consensus        72 viv~~-----~~~~~n~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           72 LINAI-----DDPQTNLQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             EEECC-----SSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             EEECC-----CChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence            77643     3443  4456667778898888876653

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.45  E-value=17  Score=30.84  Aligned_cols=75  Identities=21%  Similarity=0.337  Sum_probs=51.4

Q ss_pred             CCCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----C-CC
Q 018003          176 VLGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----F-AS  246 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~-~~  246 (362)
                      .++++||=.|++.|.   ++..|++.|.  +|+.++.+++.++...+.+       ..++.+..+|+.+..     + ..
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~   82 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNAL-------KDNYTIEVCNLANKEECSNLISKT   82 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH-------CSSEEEEECCTTSHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHh-------ccCccEEEcCCCCHHHHHHHHHhc
Confidence            357789988887653   4555666675  9999999988777665543       346888899987632     1 12


Q ss_pred             CcceEEEeccccc
Q 018003          247 SSIDAVHAGAAIH  259 (362)
Q Consensus       247 ~~fD~V~~~~vl~  259 (362)
                      +..|+++.+..+.
T Consensus        83 ~~id~li~~Ag~~   95 (249)
T 3f9i_A           83 SNLDILVCNAGIT   95 (249)
T ss_dssp             SCCSEEEECCC--
T ss_pred             CCCCEEEECCCCC
Confidence            4689999877653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	2e-12
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	4e-11
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	1e-09
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	1e-09
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	2e-09
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	3e-09
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	6e-09
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	3e-08
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-08
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	7e-08
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	2e-07
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-07
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	5e-07
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	8e-07
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	8e-06
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	9e-06
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	9e-06
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	2e-05
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	2e-05
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	2e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	3e-05
d2o57a1	282	c.66.1.18 (A:16-297) Putative sarcosine dimethylgl	3e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	9e-05
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	1e-04
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	2e-04
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	3e-04
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	0.001
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	0.001

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 64.2 bits (155), Expect = 2e-12
 Identities = 48/268 (17%), Positives = 96/268 (35%), Gaps = 50/268 (18%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMS 131
            +CP+C++PL+              +S  C    +       + ++      +      S
Sbjct: 2   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 50

Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
              E  +            R+ F+  G   P ++     ++  L       ++D  CG G
Sbjct: 51  A--EMMQ-----------ARRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEG 96

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249
            ++  FA +        LD S+  +K   +   Q +           A   RLPF+ +S+
Sbjct: 97  YYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFC--------VASSHRLPFSDTSM 148

Query: 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL 309
           DA+    A            E++RV++PGG  +  T    GP +L+     L+ + + ++
Sbjct: 149 DAIIRIYAPCKA-------EELARVVKPGGWVITATP---GPRHLME----LKGLIYNEV 194

Query: 310 KIVGFSIPVL-GFDDLKRIFRQFQLVVN 336
            +       L GF   +     + + + 
Sbjct: 195 HLHAPHAEQLEGFTLQQSAELCYPMRLR 222

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 59.4 bits (143), Expect = 4e-11
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 9/148 (6%)

Query: 154 FVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
                 PGP       L+    +P      +D  CG+G  +   A       V A+D + 
Sbjct: 8   IKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYAIDRNP 65

Query: 212 NMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI 271
             +      +Q+  +   +N  L+  D          ID    G +          +  I
Sbjct: 66  EAISTTEMNLQR--HGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI---LRII 120

Query: 272 SRVLRPGGVFVGTTYIVDGPFNLIPFSR 299
              L+PGG  + T  +++  F  +   R
Sbjct: 121 KDKLKPGGRIIVTAILLETKFEAMECLR 148

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.5 bits (135), Expect = 1e-09
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 22/245 (8%)

Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192
           A E     +      R W Q ++        +    + G L+      ++D +CG+G+ S
Sbjct: 13  AAEGIPDQYADGEAARVW-QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDS 71

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-----SRLPFASS 247
            +  + G    V ++D S+ MLK   +        P  +  ++           +P    
Sbjct: 72  IMLVEEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 129

Query: 248 SIDAVHAGAAIHCWSSPSTG-------VAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 300
               +  G +                 +  I+ ++RPGG+ V      D   +       
Sbjct: 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILSTGCAPPG 189

Query: 301 LRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYG-------HIQHYIVKIPS 353
                  DL     +  +   +    +   + + V      G        + +Y   + S
Sbjct: 190 KNIYYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVPGAGRDGAPGFSKFRLSYYPHCLAS 249

Query: 354 LCNLL 358
              L+
Sbjct: 250 FTELV 254

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 55.7 bits (133), Expect = 1e-09
 Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 13/162 (8%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
            +      ++D   G+G  +  F+        + +D ++ M++    F Q++        
Sbjct: 14  CRA--EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQ 69

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
              +     LPF   S D +    A H +S     V E++RVL+  G F+    +VD   
Sbjct: 70  ---QGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL----LVDHYA 122

Query: 293 NLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLV 334
              P          L+       +      + + +F   QL 
Sbjct: 123 PEDPVLDEFVN--HLNRLRDPSHVRESSLSEWQAMFSANQLA 162

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 55.3 bits (132), Expect = 2e-09
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 226
           L+    K     +I+D  CG G    +        S    +D  E +L +  E  +    
Sbjct: 18  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 77

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
             +          +     +   D     A +   ++P T + ++   ++ GG  +
Sbjct: 78  DSEFLE-----GDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKII 128

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 55.0 bits (131), Expect = 3e-09
 Identities = 30/171 (17%), Positives = 59/171 (34%), Gaps = 13/171 (7%)

Query: 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           P  E+++  +   L+   G  I+D   GSG     +A+    +    +D S     Q   
Sbjct: 16  PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKR 74

Query: 220 FVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 279
             ++     + +F+   A       A+   D      A       +     +++ L+PGG
Sbjct: 75  RAEELGVSERVHFIHNDAAG---YVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG 131

Query: 280 VFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQ 330
           + +    I +  +  +P +  + Q C      V  +   L    L   F  
Sbjct: 132 IML----IGEPYWRQLPATEEIAQACG-----VSSTSDFLTLPGLVGAFDD 173

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 53.8 bits (128), Expect = 6e-09
 Identities = 29/202 (14%), Positives = 63/202 (31%), Gaps = 10/202 (4%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
           L++ Y K   G +++D  CG G     + ++G       +D +E  +       +     
Sbjct: 17  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 73

Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGT 284
            K  F    +    +             +  + +S+          I+R LRPGG F+ T
Sbjct: 74  FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133

Query: 285 TYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLG----FDDLKRIFRQFQLVVNLKLF 340
               D         R+      ++L+ +            F  L  +    +  V+    
Sbjct: 134 VPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRM 193

Query: 341 YGHIQHYIVKIPSLCNLLNYVN 362
               +   + +      +++  
Sbjct: 194 VDGFKRLGLSLVERKGFIDFYE 215

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-08
 Identities = 18/142 (12%), Positives = 37/142 (26%), Gaps = 24/142 (16%)

Query: 165 EFELMKGYLKPVLGG------------NIIDASCGSGLFSRIFAK------SGLFSLVVA 206
           E + M+ ++   L G             I+    G+G               G+      
Sbjct: 16  EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEV 75

Query: 207 LDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL------PFASSSIDAVHAGAAIHC 260
           ++ S   + +  E V + SN     F   +   S               D +H    ++ 
Sbjct: 76  VEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY 135

Query: 261 WSSPSTGVAEISRVLRPGGVFV 282
                  +     +L      +
Sbjct: 136 VKDIPATLKFFHSLLGTNAKML 157

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 16/137 (11%), Positives = 33/137 (24%), Gaps = 8/137 (5%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKENFLL 234
            +D   G G      A +        ++ ++   K      ++              + L
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214

Query: 235 VRADISRLPFASSSIDA-VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN 293
            R D     +     +  V               + E    ++ GG  V +       F 
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFR 274

Query: 294 LIPFSRLLRQVCFLDLK 310
            I    L      + + 
Sbjct: 275 -INSRNLSDIGTIMRVV 290

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 50.0 bits (118), Expect = 7e-08
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 14/143 (9%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
           M+   E  + + +   G      +       + P   G  +D  CG+G  S   A +G  
Sbjct: 1   MTVRDENYFTEKY---GLTRTHSDVLAAAKVVAP---GRTLDLGCGNGRNSLYLAANGYD 54

Query: 202 SLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCW 261
                 + +          +++       + L                D + +   +   
Sbjct: 55  VTAWDKNPA------SMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL 108

Query: 262 SSP--STGVAEISRVLRPGGVFV 282
            +      +A + R  +PGG  +
Sbjct: 109 EAQTIPGLIANMQRCTKPGGYNL 131

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-07
 Identities = 18/145 (12%), Positives = 45/145 (31%), Gaps = 7/145 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
           GG +++   G  + +    ++ +      ++ ++ + ++  ++  ++++       L   
Sbjct: 54  GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112

Query: 238 DISRLPFASS---SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 294
               LP         D              +       R+L+PGGV         G    
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWGELMK 172

Query: 295 IPFSRL---LRQVCFLDLKIVGFSI 316
             +S +     +     L   GF  
Sbjct: 173 SKYSDITIMFEETQVPALLEAGFRR 197

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 27/228 (11%), Positives = 61/228 (26%), Gaps = 61/228 (26%)

Query: 135 EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSR 193
             +  P        G          P   +   +        V G  +ID   G  ++  
Sbjct: 21  NNYAPPRGDLCNPNGVG--------PWKLRCLAQTFAT--GEVSGRTLIDIGSGPTVYQ- 69

Query: 194 IFAKSGLFSLVVALDYSENMLKQ----------------CYEFVQQESNFPKE------- 230
           + +    F  +   D+ E   ++                  +         +        
Sbjct: 70  LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129

Query: 231 ----NFLLVRADISR------LPFASSSIDAVHAGAAIHC----WSSPSTGVAEISRVLR 276
                  ++  D+ +         A    DA+ +   +       +S    +  I+ +LR
Sbjct: 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR 189

Query: 277 PGGVFVGTTYI-------VDGPFNLIPFSR-LLRQVCFLDLKIVGFSI 316
           PGG  +    +        +    ++P S   +R+     L   G+ +
Sbjct: 190 PGGHLLLIGALEESWYLAGEARLTVVPVSEEEVREA----LVRSGYKV 233

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
            +K      I+     +G      A      +V A++Y+  +++   E +   +      
Sbjct: 71  PIKR--DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMR---ELLDACAERENII 125

Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
            +L         +A+           +   +     +      L+ GG  +
Sbjct: 126 PILGD-ANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 47.3 bits (111), Expect = 8e-07
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 7/110 (6%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENF 232
           LK      ++D + G G  +  FA       VVA D +E++LK    F++   +   E  
Sbjct: 13  LKG--NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYV 68

Query: 233 LLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
                 +         +       A H + +P++ V+E  RVL+ GG  +
Sbjct: 69  QGDAEQMPFTDERFHIVTCRI---AAHHFPNPASFVSEAYRVLKKGGQLL 115

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.8 bits (105), Expect = 8e-06
 Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 15/149 (10%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D   G+G+     AK+G    V+ ++ S             ++N       +++ 
Sbjct: 34  DKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISDYAVK---IVKANKLDHVVTIIKG 89

Query: 238 DISRLPFASSSIDAVHAGAAIHC---WSSPSTGVAEISRVLRPGGVFV---GTTYIVDGP 291
            +  +      +D + +    +C    S  +T +    + L P G+      T Y+    
Sbjct: 90  KVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPDRATLYVT--- 146

Query: 292 FNLIPFSRLLRQVCFLDLKIVGFSIPVLG 320
              I   +           + GF +  + 
Sbjct: 147 --AIEDRQYKDYKIHWWENVYGFDMSCIK 173

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 9e-06
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 36/150 (24%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL--- 234
           G  +ID   G  ++  + A    F  +   D+++   ++  +++++E         +   
Sbjct: 52  GDTLIDIGSGPTIYQ-VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA 110

Query: 235 ----------------------------VRADISRLPFASSSIDAVHAGAAIHC----WS 262
                                       V       P      D V    A+ C      
Sbjct: 111 CELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD 170

Query: 263 SPSTGVAEISRVLRPGGVFVGTTYIVDGPF 292
           +    +  ++ +L+PGG  V T  +    +
Sbjct: 171 AYRAALCNLASLLKPGGHLVTTVTLRLPSY 200

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.9 bits (103), Expect = 9e-06
 Identities = 18/111 (16%), Positives = 32/111 (28%), Gaps = 6/111 (5%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKEN 231
            L+      ++     SG      A      ++ A++YS    ++  E V++ +N     
Sbjct: 53  KLRG--DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNI---I 107

Query: 232 FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
            LL  A                    I   +      A     L+  G  V
Sbjct: 108 PLLFDASKPWKYS-GIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV 157

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 6/120 (5%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222
           K+   +        G  +++A  GSG  +    ++ G    V++ +   +  +     V 
Sbjct: 83  KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142

Query: 223 QESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
                P +N+ LV +D++       S+D       +    +P   +  +SR+L  GGV +
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLM 197

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 27/179 (15%), Positives = 55/179 (30%), Gaps = 20/179 (11%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D  CG+G+ S   AK+G    V+ +D SE + +        +         L++ 
Sbjct: 36  DKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLED---TITLIKG 91

Query: 238 DISRLPFASSSIDAVHAGAAIHCWSSPSTG---VAEISRVLRPGGVFV---GTTYIVDGP 291
            I  +      +D + +    +     S     +   ++ L  GG       T  +V   
Sbjct: 92  KIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLV--- 148

Query: 292 FNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVK 350
              +               + GF         +K+      +V  L       +   +K
Sbjct: 149 --AVSDVNKHADRIAFWDDVYGFK-----MSCMKKAVIPEAVVEVLDPKTLISEPCGIK 200

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 13/171 (7%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF 227
           +++ +      GN+++     G F+    +   F+ +  ++ SE  +      ++    +
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQE--HFNDITCVEASEEAISHAQGRLKDGITY 68

Query: 228 PKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEI-SRVLRPGGVFVGTTY 286
               F                 D +     +     P   +  I    L  GG       
Sbjct: 69  IHSRF--------EDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP 120

Query: 287 IVDGPFNLIPFSRLLRQVCFL--DLKIVGFSIPVLGFDDLKRIFRQFQLVV 335
             +     I     +        + +           D L+R   +  L V
Sbjct: 121 NANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQV 171

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226
           +M+  L+P  G +I++   GSG  S     +      +  ++  E+ LK+  + + +  +
Sbjct: 78  IMRCGLRP--GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 135

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 282
                              +  I      A I     P   V +I+ +++PG V  
Sbjct: 136 IGNVRT--------SRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT 183

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

 Score = 42.8 bits (99), Expect = 3e-05
 Identities = 27/180 (15%), Positives = 53/180 (29%), Gaps = 18/180 (10%)

Query: 145 IYERGWR-QNFVWGGFPGPEKE--------------FELMKGYLKPVLGGNIIDASCGSG 189
            Y   W  ++   G +  P  +                 +            +D   G G
Sbjct: 20  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 79

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSI 249
             +R   +    S +  L+ +    K+  E+  Q                  +P   +S 
Sbjct: 80  GAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITV--KYGSFLEIPCEDNSY 136

Query: 250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDL 309
           D + +  A            E +RVL+P GV   T  + +   +      +L ++   D+
Sbjct: 137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKLHDM 196

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 14/129 (10%), Positives = 32/129 (24%), Gaps = 11/129 (8%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML----KQCYEFVQQESNFP 228
           LK   G   +D   G G      A     +L    +  ++       Q  E  ++   + 
Sbjct: 214 LKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271

Query: 229 KEN---FLLVRADISRLPFASSSIDAVHAGAAIHCWSSPST--GVAEISRVLRPGGVFVG 283
                    ++         +  I         +          V +I +  + G   + 
Sbjct: 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331

Query: 284 TTYIVDGPF 292
              +    +
Sbjct: 332 LKSLRSLTY 340

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (96), Expect = 9e-05
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA 237
              ++D  CG+G+ S   AK G    V+ +D S  +            +        +R 
Sbjct: 39  DKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITL---LRG 94

Query: 238 DISRLPFASSSIDAVHA---GAAIHCWSSPSTGVAEISRVLRPGGVFV 282
            +  +      +D + +   G  +   S   T +      L  GG+  
Sbjct: 95  KLEDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 31/193 (16%), Positives = 60/193 (31%), Gaps = 20/193 (10%)

Query: 124 KDYGELM--SPATEFF-RMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGN 180
           K  GE++  S   + +  +P +        R            K+   +   L    G  
Sbjct: 52  KGPGEIIRTSAGKKGYILIPSLIDEIMNMKR-----RTQIVYPKDSSFIAMMLDVKEGDR 106

Query: 181 IIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI 239
           IID   GSG    + A+  G    V A +  E   K     + +     +          
Sbjct: 107 IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTI------- 159

Query: 240 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 299
            ++   S   D     A       P   + +    L+ GG F       +     +   +
Sbjct: 160 -KVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVCPTTNQVQETL---K 215

Query: 300 LLRQVCFLDLKIV 312
            L+++ F+ +++ 
Sbjct: 216 KLQELPFIRIEVW 228

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 16/130 (12%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ 222
           K+  ++   +    G  +++A  GSG  S   +K+ G    V++ +  ++      +  +
Sbjct: 85  KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYK 144

Query: 223 Q--------ESNFPKENFLLVRADISRLP--FASSSIDAVHAGAAIHCWSSPSTGVAEIS 272
                          +N   +  DIS       S + DAV          +P   +    
Sbjct: 145 HWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDML-----NPHVTLPVFY 199

Query: 273 RVLRPGGVFV 282
             L+ GGV  
Sbjct: 200 PHLKHGGVCA 209

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 16/139 (11%), Positives = 41/139 (29%), Gaps = 11/139 (7%)

Query: 163 EKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 220
           +K  + +        ++  + +D +CG+G  +                ++ ++ ++    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF------KNTWAVDLSQEMLSE 74

Query: 221 VQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVA---EISRVLRP 277
            + +         L   DIS L              + +              +S  L+ 
Sbjct: 75  AENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKE 134

Query: 278 GGVFVGTTYIVDGPFNLIP 296
           GGVF+           ++ 
Sbjct: 135 GGVFIFDINSYYKLSQVLG 153

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 10/121 (8%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE- 230
           +LKP     I+D + G G  SR   +      ++ +D    +L+   E +++ S+     
Sbjct: 18  FLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLF 77

Query: 231 -------NFLLVRADISRL--PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 281
                  +FLL    I ++        +             +    + +   +L PGG  
Sbjct: 78  KVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRI 137

Query: 282 V 282
           V
Sbjct: 138 V 138

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.8 bits (86), Expect = 0.001
 Identities = 28/174 (16%), Positives = 54/174 (31%), Gaps = 13/174 (7%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++ YLK      ++D   G+G +S    +      VV +D S+ ML+   E   +   
Sbjct: 34  SFLEEYLKN--PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVV 89

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 286
             K               + +    +  G  +    +     +EI RVL P G+ + T  
Sbjct: 90  EAKAE--------DLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141

Query: 287 IVDGPFNLIPFSRLLRQVC-FLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL 339
                   +       Q+  FL  +       +  F+           +   + 
Sbjct: 142 NFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSLEGFET 195

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 31/167 (18%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
            L+  Y+K    G ++D +CG G FS +    G            ++ +      ++ + 
Sbjct: 29  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE------VVGVDISEDMIRKAREYAK 80

Query: 227 FPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT 284
             + N   +  D  +L F   + D V    +I  +     +    E+ RVL+P G F+  
Sbjct: 81  SRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY 140

Query: 285 TYIVDGPFNLIPFSRLLRQVCFLD--LKIVGFSIPVLGFDDLKRIFR 329
              +      +  S ++ Q  ++   +        V+ F   +  FR
Sbjct: 141 FTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQDSFR 187

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.95
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.95
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.94
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.93
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.91
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.91
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.89
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.87
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.87
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.86
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.85
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.85
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.85
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.84
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.84
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.83
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.83
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.83
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.83
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.82
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.81
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.81
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.8
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.77
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.77
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.76
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.76
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.76
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.75
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.73
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.71
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.7
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.7
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.69
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.66
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.66
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.64
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.63
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.61
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.59
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.58
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.58
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.58
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.56
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.56
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.5
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.48
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.46
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.44
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.44
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.43
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.37
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.36
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.35
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.33
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.26
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.23
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.14
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.12
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.11
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.1
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.05
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.05
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.04
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.04
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.96
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.93
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.9
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.88
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.88
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.85
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.82
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.71
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.71
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.68
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.66
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.64
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.63
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.62
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.59
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.52
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.51
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.51
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.49
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.42
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.41
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.4
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.38
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.38
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.35
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.35
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.34
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.3
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.26
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	98.25
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	98.25
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	98.15
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.09
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.07
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.93
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.93
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.28
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.22
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.18
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.09
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.97
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.94
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.87
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.85
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.85
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.84
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.7
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.65
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.64
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.43
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	96.37
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.36
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.2
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.11
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.86
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.76
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	95.51
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.37
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.26
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.0
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.92
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.67
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.66
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.63
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	94.04
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	93.76
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.58
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	93.41
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.36
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.29
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.17
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	92.77
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	92.72
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.35
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	92.21
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.69
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	91.25
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.02
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	90.87
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	90.65
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	90.28
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.95
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.33
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	89.0
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	88.54
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	88.48
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	88.36
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.16
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	87.62
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.48
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	87.32
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	86.93
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.92
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.9
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	86.33
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.21
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	86.14
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	85.97
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	85.58
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	85.15
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	84.84
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	84.8
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.74
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	84.61
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	84.3
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	83.69
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	83.19
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.83
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	82.37
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	82.17
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	81.49
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	81.2
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	81.18
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	80.08

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.6e-28  Score=219.49  Aligned_cols=179  Identities=22%  Similarity=0.325  Sum_probs=138.6

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCCCCCCcCCCCccchhcccCchhhHHHhhhh
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~  150 (362)
                      .++||+|+++|....           +.++|.+||+++..++||+++++......|.....  .+.+.           .
T Consensus         1 sf~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~--~~~~~-----------a   56 (268)
T d1p91a_           1 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS--AEMMQ-----------A   56 (268)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSS--HHHHH-----------H
T ss_pred             CccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCCCC--HHHHH-----------H
Confidence            479999999987654           57999999998888999999987655444433211  11111           1


Q ss_pred             hhhhccCCCCCc--HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003          151 RQNFVWGGFPGP--EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (362)
Q Consensus       151 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  228 (362)
                      |+.+...+++..  +.....+...+ +.++.+|||||||+|.++..+++.+++.+++|+|+|+.|++.|+++        
T Consensus        57 r~~~l~~g~~~~l~~~~~~~l~~~~-~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~--------  127 (268)
T d1p91a_          57 RRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR--------  127 (268)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHS-CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH--------
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHhc-CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc--------
Confidence            333443443322  22233344444 3457799999999999999999998888999999999999999886        


Q ss_pred             CCCEEEEEecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       229 ~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      ..++.++++|+.++|+++++||+|++.++++|       ++|+.|+|||||++++++|+.+
T Consensus       128 ~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         128 YPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             CTTSEEEECCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             cccccceeeehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence            56889999999999999999999999999887       5789999999999999999864

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.95  E-value=8e-27  Score=204.88  Aligned_cols=165  Identities=18%  Similarity=0.227  Sum_probs=135.6

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +.++++.+..+++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...   ..+++.++++|++.+|++
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~---~~~~i~~~~~d~~~l~~~   78 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGN---GHQQVEYVQGDAEQMPFT   78 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCC-CCCSC
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhccccc---cccccccccccccccccc
Confidence            35677778888899999999999999999999886  9999999999999999988765   257899999999999999


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|++.+++||++|+..+++++.++|||||++++.++.....    +....+...... ..... |...++.+++.
T Consensus        79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~  152 (231)
T d1vl5a_          79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFYNYVEK-ERDYS-HHRAWKKSDWL  152 (231)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHHHHHHH-HHCTT-CCCCCBHHHHH
T ss_pred             ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCC----HHHHHHHHHHHh-hcccC-cccCCCHHHHH
Confidence            9999999999999999999999999999999999999988765322    222222222211 11222 67789999999


Q ss_pred             HHHHHCCCEEEEEEEe
Q 018003          326 RIFRQFQLVVNLKLFY  341 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~~  341 (362)
                      ++|+++||++++...+
T Consensus       153 ~~l~~aGf~~~~~~~~  168 (231)
T d1vl5a_         153 KMLEEAGFELEELHCF  168 (231)
T ss_dssp             HHHHHHTCEEEEEEEE
T ss_pred             HHHHHCCCEEEEEEEe
Confidence            9999999988776554

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.94  E-value=4.8e-26  Score=200.56  Aligned_cols=164  Identities=20%  Similarity=0.243  Sum_probs=135.2

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+.+.+..+++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...   ...++.++++|++++|++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~---~~~~~~~~~~d~~~~~~~   79 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEK---GVENVRFQQGTAESLPFP   79 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHH---TCCSEEEEECBTTBCCSC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccc---cccccccccccccccccc
Confidence            35677888888999999999999999999999875  9999999999999999998765   246899999999999999


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLK  325 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~  325 (362)
                      +++||+|++.++++|++|+..+++++.++|||||++++.++..........++..+...     .. +.|...++..++.
T Consensus        80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~  153 (234)
T d1xxla_          80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRL-----RD-PSHVRESSLSEWQ  153 (234)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHH-----HC-TTCCCCCBHHHHH
T ss_pred             ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCHHHHHHHHHHHhh-----CC-CcccccCCHHHHH
Confidence            99999999999999999999999999999999999999887654321222222222211     11 2267788999999


Q ss_pred             HHHHHCCCEEEEEEE
Q 018003          326 RIFRQFQLVVNLKLF  340 (362)
Q Consensus       326 ~ll~~~Gf~~v~~~~  340 (362)
                      .+++.+||.......
T Consensus       154 ~~~~~~gf~~~~~~~  168 (234)
T d1xxla_         154 AMFSANQLAYQDIQK  168 (234)
T ss_dssp             HHHHHTTEEEEEEEE
T ss_pred             HHHHHCCCceeEEEE
Confidence            999999997765443

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.93  E-value=1.1e-24  Score=197.05  Aligned_cols=162  Identities=14%  Similarity=0.058  Sum_probs=130.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      +.+.......++.+|||||||+|.++..++++. +.+|+|+|+|+.+++.|+++....  +...++.++++|+.++|+++
T Consensus        57 ~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~--gl~~~v~~~~~d~~~l~~~~  133 (282)
T d2o57a1          57 SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA--GLADNITVKYGSFLEIPCED  133 (282)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH--TCTTTEEEEECCTTSCSSCT
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccc--cccccccccccccccccccc
Confidence            344444566789999999999999999998863 349999999999999999988765  23568999999999999999


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKR  326 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~  326 (362)
                      ++||+|++..+++|++|+..+++++.++|||||++++.++........ ..+..+.....        ...+.+...+.+
T Consensus       134 ~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~s~~~~~~  204 (282)
T d2o57a1         134 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDK-SSIQPILDRIK--------LHDMGSLGLYRS  204 (282)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCG-GGGHHHHHHHT--------CSSCCCHHHHHH
T ss_pred             cccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCch-hHHHHHHHHhc--------cCCCCCHHHHHH
Confidence            999999999999999999999999999999999999998876543222 22222222221        234568899999


Q ss_pred             HHHHCCCEEEEEEE
Q 018003          327 IFRQFQLVVNLKLF  340 (362)
Q Consensus       327 ll~~~Gf~~v~~~~  340 (362)
                      +++++||+.+....
T Consensus       205 ~l~~~Gf~~i~~~d  218 (282)
T d2o57a1         205 LAKECGLVTLRTFS  218 (282)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHcCCceEEEEE
Confidence            99999998887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.1e-23  Score=184.77  Aligned_cols=168  Identities=17%  Similarity=0.160  Sum_probs=135.4

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  239 (362)
                      +.....+..+.+.+...++.+|||||||+|.++..+++.. +++|+|+|+|+.|++.|+++....  +...+++++++|+
T Consensus        16 p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~-~~~v~GvD~s~~~~~~ar~~~~~~--gl~~~v~~~~~d~   92 (245)
T d1nkva_          16 PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEEL--GVSERVHFIHNDA   92 (245)
T ss_dssp             SCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEESCC
T ss_pred             CCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc-CCEEEEEecccchhhHHHHHHHHh--hccccchhhhhHH
Confidence            3345567888999999999999999999999999998864 359999999999999999988776  3356799999999


Q ss_pred             CCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccC
Q 018003          240 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVL  319 (362)
Q Consensus       240 ~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (362)
                      .++. ++++||+|++..+++|++|+..++++++++|||||++++.++........    ......+    .... ...+.
T Consensus        93 ~~~~-~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~----~~~~~~~----~~~~-~~~~~  162 (245)
T d1nkva_          93 AGYV-ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT----EEIAQAC----GVSS-TSDFL  162 (245)
T ss_dssp             TTCC-CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS----HHHHHTT----TCSC-GGGSC
T ss_pred             hhcc-ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCCh----HHHHHHh----ccCC-CcccC
Confidence            9874 67899999999999999999999999999999999999998876433211    1111111    1112 44577


Q ss_pred             CHHHHHHHHHHCCCEEEEEEE
Q 018003          320 GFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       320 s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                      +...+..+++++||+++....
T Consensus       163 ~~~~~~~~~~~aG~~~v~~~~  183 (245)
T d1nkva_         163 TLPGLVGAFDDLGYDVVEMVL  183 (245)
T ss_dssp             CHHHHHHHHHTTTBCCCEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEEe
Confidence            899999999999998776543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=1.3e-23  Score=181.30  Aligned_cols=140  Identities=15%  Similarity=0.198  Sum_probs=115.7

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +.+|||||||+|.++..+.      +++|+|+|+.|++.|+++          ++.++++|++++|+++++||+|++.++
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~----------~~~~~~~d~~~l~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKR----------GVFVLKGTAENLPLKDESFDFALMVTT  100 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHT----------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhccccccc----------ccccccccccccccccccccccccccc
Confidence            5689999999999987762      578999999999999873          689999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                      |||++||..+++++.++|||||.+++.+++.+.      +................ +..+++.+++.++|+++||++++
T Consensus       101 l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~s~~~l~~~l~~~Gf~~i~  173 (208)
T d1vlma_         101 ICFVDDPERALKEAYRILKKGGYLIVGIVDRES------FLGREYEKNKEKSVFYK-NARFFSTEELMDLMRKAGFEEFK  173 (208)
T ss_dssp             GGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSS------HHHHHHHHTTTC-CCST-TCCCCCHHHHHHHHHHTTCEEEE
T ss_pred             cccccccccchhhhhhcCCCCceEEEEecCCcc------hhHHhhhhccccccccc-cccCCCHHHHHHHHHHcCCeEEE
Confidence            999999999999999999999999999997653      12222222221222333 77889999999999999999887


Q ss_pred             EEE
Q 018003          338 KLF  340 (362)
Q Consensus       338 ~~~  340 (362)
                      ...
T Consensus       174 v~~  176 (208)
T d1vlma_         174 VVQ  176 (208)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.89  E-value=4.7e-23  Score=180.12  Aligned_cols=152  Identities=13%  Similarity=0.110  Sum_probs=118.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      .+++|||||||+|.++..+++.+.  +|+|+|+|+++++.|+++.       ..++.++.+|++.+++ +++||+|++.+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~-------~~~~~~~~~~~~~~~~-~~~fD~I~~~~   89 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL-------KDGITYIHSRFEDAQL-PRRYDNIVLTH   89 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS-------CSCEEEEESCGGGCCC-SSCEEEEEEES
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhccc-------cccccccccccccccc-ccccccccccc
Confidence            366899999999999999998886  8999999999999999863       3479999999988875 57899999999


Q ss_pred             cccCCCCHHHHHHHHH-hhccCCcEEEEEEEccCCCCcchhhhHHH---HHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003          257 AIHCWSSPSTGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLL---RQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~-r~LkpgG~li~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      +|||++||..+++++. ++|||||.+++.+|+..............   ...+.......+ |.+.++.++++++++++|
T Consensus        90 vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~l~~~l~~~G  168 (225)
T d2p7ia1          90 VLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG-HRCTYALDTLERDASRAG  168 (225)
T ss_dssp             CGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTT-CCCCCCHHHHHHHHHHTT
T ss_pred             eeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCcccccee-eeeccCHHHHHHHHHHCC
Confidence            9999999999999998 89999999999999865321100000000   000000001123 778899999999999999


Q ss_pred             CEEEEEE
Q 018003          333 LVVNLKL  339 (362)
Q Consensus       333 f~~v~~~  339 (362)
                      |++++..
T Consensus       169 f~i~~~~  175 (225)
T d2p7ia1         169 LQVTYRS  175 (225)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9887643

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=4.2e-21  Score=167.55  Aligned_cols=172  Identities=12%  Similarity=0.101  Sum_probs=123.6

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVH  253 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~  253 (362)
                      .++.+|||+|||+|..+..+++.  .++.+|+|+|+|+.|++.|+++++..  ....++.+..+|+..++  ...+|+|+
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~--~~~~~~~~~~~d~~~~~--~~~~d~i~  113 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--HSEIPVEILCNDIRHVE--IKNASMVI  113 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS--CCSSCEEEECSCTTTCC--CCSEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh--cccchhhhccchhhccc--cccceeeE
Confidence            34789999999999999999875  35679999999999999999998765  23456777888877665  46799999


Q ss_pred             ecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhh--ccc---------ccccccccCC
Q 018003          254 AGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFL--DLK---------IVGFSIPVLG  320 (362)
Q Consensus       254 ~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~s  320 (362)
                      +..++||++  |+..+|++++++|||||.+++.++..................+..  .+.         ........++
T Consensus       114 ~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  193 (225)
T d1im8a_         114 LNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS  193 (225)
T ss_dssp             EESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred             EeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence            999999995  778999999999999999999988764332222211111111100  000         0001235579


Q ss_pred             HHHHHHHHHHCCCEEEEEEE-eceeEEEEeeC
Q 018003          321 FDDLKRIFRQFQLVVNLKLF-YGHIQHYIVKI  351 (362)
Q Consensus       321 ~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~~~k  351 (362)
                      .+++..+|+++||+.++.++ ...+..+++.|
T Consensus       194 ~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         194 IETHKVRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            99999999999999887753 23344555443

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.1e-22  Score=174.51  Aligned_cols=146  Identities=17%  Similarity=0.141  Sum_probs=119.7

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEe
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHA  254 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~  254 (362)
                      ..++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++...   ...++.++++|++++++++++||+|++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~---~~~~~~f~~~d~~~~~~~~~~fD~I~~  133 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEE---GKRVRNYFCCGLQDFTPEPDSYDVIWI  133 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGG---GGGEEEEEECCGGGCCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhccccccccc---ccccccccccccccccccccccccccc
Confidence            44568999999999999998776543 48999999999999999987764   135789999999999988999999999


Q ss_pred             cccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCC
Q 018003          255 GAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQ  332 (362)
Q Consensus       255 ~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~G  332 (362)
                      .++++|++++.  .++++++++|||||.+++.++........               .... +...++.+.++++++++|
T Consensus       134 ~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~~l~~~aG  197 (222)
T d2ex4a1         134 QWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL---------------DDVD-SSVCRDLDVVRRIICSAG  197 (222)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE---------------ETTT-TEEEEBHHHHHHHHHHTT
T ss_pred             ccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccc---------------ccCC-ceeeCCHHHHHHHHHHcC
Confidence            99999998874  79999999999999999998765432110               1111 345568999999999999


Q ss_pred             CEEEEEEE
Q 018003          333 LVVNLKLF  340 (362)
Q Consensus       333 f~~v~~~~  340 (362)
                      |++++...
T Consensus       198 f~ii~~~~  205 (222)
T d2ex4a1         198 LSLLAEER  205 (222)
T ss_dssp             CCEEEEEE
T ss_pred             CEEEEEEE
Confidence            99887654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.86  E-value=1.3e-21  Score=173.92  Aligned_cols=153  Identities=13%  Similarity=0.070  Sum_probs=122.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+++.+...++.+|||+|||+|.++..++..+. ..|+++|+|+.|++.|++++...     .++.++++|++.+++++
T Consensus        83 ~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          83 RNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGM-----PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTS-----SEEEEEESCGGGCCCCS
T ss_pred             HHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhcccccc-----ccceeEEccccccccCC
Confidence            4455566666788999999999999998776643 38999999999999999986553     57899999999999889


Q ss_pred             CcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ++||+|++.++++|++|+.  .+|+++.++|||||.+++.++.........              .... +..+.+.+.+
T Consensus       157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~--------------d~~d-~~~~rs~~~~  221 (254)
T d1xtpa_         157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV--------------DKED-SSLTRSDIHY  221 (254)
T ss_dssp             SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE--------------ETTT-TEEEBCHHHH
T ss_pred             CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCccee--------------cccC-CceeCCHHHH
Confidence            9999999999999998875  789999999999999999887654211100              0011 3345689999


Q ss_pred             HHHHHHCCCEEEEEEE
Q 018003          325 KRIFRQFQLVVNLKLF  340 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~  340 (362)
                      +++++++||++++...
T Consensus       222 ~~l~~~aGf~ii~~~~  237 (254)
T d1xtpa_         222 KRLFNESGVRVVKEAF  237 (254)
T ss_dssp             HHHHHHHTCCEEEEEE
T ss_pred             HHHHHHcCCEEEEEEe
Confidence            9999999999887654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.85  E-value=1.6e-20  Score=166.79  Aligned_cols=166  Identities=13%  Similarity=0.096  Sum_probs=125.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+.+.+.....++|||||||+|.++..++++.++.+++++|+ +.+++.+++++...  +...++.++.+|+.+. . 
T Consensus        69 ~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~--~~~~rv~~~~~D~~~~-~-  143 (253)
T d1tw3a2          69 FDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--GLSDRVDVVEGDFFEP-L-  143 (253)
T ss_dssp             THHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--TCTTTEEEEECCTTSC-C-
T ss_pred             HHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh--hcccchhhccccchhh-c-
Confidence            35666677777778999999999999999999999899999998 67899999988775  3357899999998653 2 


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      ..+||+|++.++|||++|+.  .+|++++++|||||++++.+.................-...   ...  .....+.++
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~---~~~--~g~~rt~~e  218 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRML---VFL--GGALRTREK  218 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHH---HHH--SCCCCBHHH
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHH---hhC--CCcCCCHHH
Confidence            35699999999999998774  78999999999999999987654322111111111110100   011  234568999


Q ss_pred             HHHHHHHCCCEEEEEEEe
Q 018003          324 LKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~~~~  341 (362)
                      |+++++++||+++++...
T Consensus       219 ~~~ll~~AGf~~~~v~~~  236 (253)
T d1tw3a2         219 WDGLAASAGLVVEEVRQL  236 (253)
T ss_dssp             HHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHCCCeEEEEEEC
Confidence            999999999998877654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=3.6e-21  Score=167.39  Aligned_cols=113  Identities=28%  Similarity=0.492  Sum_probs=100.0

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+.++++  ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ..++.++++|+..+|++++
T Consensus        30 ~~~~~l~--~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~----~~~~~~~~~d~~~l~~~~~  101 (226)
T d1ve3a1          30 LLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR----ESNVEFIVGDARKLSFEDK  101 (226)
T ss_dssp             HHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEECCTTSCCSCTT
T ss_pred             HHHHhcC--CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhccc----cccccccccccccccccCc
Confidence            3444554  467999999999999999999875  9999999999999999988776    4678899999999999999


Q ss_pred             cceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          248 SIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +||+|++..+++|++  |+.++|+++.++|||||++++..++.
T Consensus       102 ~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         102 TFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             CEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             CceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            999999999999997  66789999999999999999988764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.85  E-value=1.6e-20  Score=169.24  Aligned_cols=173  Identities=12%  Similarity=0.090  Sum_probs=124.1

Q ss_pred             HHHHhhc-CCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          167 ELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       167 ~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      +.+.+.+ ...++.+|||+|||+|.++..+++..+ +.+|+|+|+|+.+++.|++++...    ..++.+.++|+..+++
T Consensus        16 ~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----~~~~~f~~~d~~~~~~   91 (281)
T d2gh1a1          16 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----PYDSEFLEGDATEIEL   91 (281)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----SSEEEEEESCTTTCCC
T ss_pred             HHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----cccccccccccccccc
Confidence            4444433 445678999999999999999988644 468999999999999999998776    4579999999999887


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCC---C----cchh---hhHHHHHhhhhccccccc
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP---F----NLIP---FSRLLRQVCFLDLKIVGF  314 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~---~----~~~~---~~~~~~~~~~~~~~~~~~  314 (362)
                      + ++||+|++.++++|++||..+|+++.++|||||.+++.++.....   .    ....   .+..+...+.......+ 
T Consensus        92 ~-~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  169 (281)
T d2gh1a1          92 N-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG-  169 (281)
T ss_dssp             S-SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTC-
T ss_pred             c-CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcC-
Confidence            5 579999999999999999999999999999999999998753100   0    0000   01111111111111111 


Q ss_pred             ccccCCHHHHHHHHHHCCCEEEEEEEeceeEE
Q 018003          315 SIPVLGFDDLKRIFRQFQLVVNLKLFYGHIQH  346 (362)
Q Consensus       315 ~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~~  346 (362)
                      . ...-...+..+|+++||+.++.........
T Consensus       170 ~-~~~i~~~l~~~l~eaGf~~i~~~~~~~v~~  200 (281)
T d2gh1a1         170 K-DGNIGMKIPIYLSELGVKNIECRVSDKVNF  200 (281)
T ss_dssp             C-CTTGGGTHHHHHHHTTCEEEEEEECCCCEE
T ss_pred             C-CCCHHHHHHHHHHHcCCeEEEEEEeccccc
Confidence            1 111123578899999999998776655443

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.84  E-value=6.6e-20  Score=162.88  Aligned_cols=168  Identities=14%  Similarity=0.078  Sum_probs=125.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.+.++.....+|||||||+|.++..++++.|+.+++++|+ +++++.++++++..  +...++.++.+|+.. +.+ 
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~--~~~~ri~~~~~d~~~-~~p-  145 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--GLADRVTVAEGDFFK-PLP-  145 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--TCTTTEEEEECCTTS-CCS-
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc--CCcceeeeeeeeccc-ccc-
Confidence            4556666666678999999999999999999999899999998 78899999988765  345789999999865 333 


Q ss_pred             CcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHH
Q 018003          247 SSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDL  324 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l  324 (362)
                      ..||+|++.++|||++|..  .+|++++++|||||++++.++.........+...........  .. . .....|.++|
T Consensus       146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml--~~-~-~g~~rt~~e~  221 (256)
T d1qzza2         146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRML--TF-M-GGRVRTRDEV  221 (256)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHH--HH-H-SCCCCCHHHH
T ss_pred             ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHH--hh-C-CCccCCHHHH
Confidence            4599999999999998764  679999999999999999887543222222333322222110  01 1 2345689999


Q ss_pred             HHHHHHCCCEEEEEEEece
Q 018003          325 KRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       325 ~~ll~~~Gf~~v~~~~~g~  343 (362)
                      +++++++||++++....+.
T Consensus       222 ~~ll~~AGf~~~~~~~~~~  240 (256)
T d1qzza2         222 VDLAGSAGLALASERTSGS  240 (256)
T ss_dssp             HHHHHTTTEEEEEEEEECC
T ss_pred             HHHHHHCCCceeEEEEeCC
Confidence            9999999999998876654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.84  E-value=3.2e-20  Score=166.68  Aligned_cols=170  Identities=12%  Similarity=0.076  Sum_probs=127.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+.+...+|.+|||||||+|.++..+++.. +++|+|+|+|+++++.|++++++.  +...++.+...|...+   
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~--~l~~~~~~~~~d~~~~---  114 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASI--DTNRSRQVLLQGWEDF---  114 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTS--CCSSCEEEEESCGGGC---
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhh--ccccchhhhhhhhhhh---
Confidence            5678888888999999999999999999988774 359999999999999999998876  3355777877787655   


Q ss_pred             CCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCcch----hhh-HH-HHHhhhhcccccccccc
Q 018003          246 SSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLI----PFS-RL-LRQVCFLDLKIVGFSIP  317 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~----~~~-~~-~~~~~~~~~~~~~~~~~  317 (362)
                      +++||.|++..+++|+.++  ..+++++.++|||||++++.+..........    ... .. ....+...+..+  ...
T Consensus       115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifP--gg~  192 (280)
T d2fk8a1         115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP--GGR  192 (280)
T ss_dssp             CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST--TCC
T ss_pred             ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccC--CCc
Confidence            4689999999999999765  7899999999999999999876543211100    000 00 000111111222  245


Q ss_pred             cCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          318 VLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       318 ~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      ..+..++.+.++++||++.....++.
T Consensus       193 lPS~~~l~~~~e~aGf~v~~~~~~~~  218 (280)
T d2fk8a1         193 LPSTEMMVEHGEKAGFTVPEPLSLRP  218 (280)
T ss_dssp             CCCHHHHHHHHHHTTCBCCCCEECHH
T ss_pred             ccchHhhhhhHHhhccccceeeeccc
Confidence            67899999999999999887776653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=7.1e-20  Score=164.97  Aligned_cols=170  Identities=14%  Similarity=0.020  Sum_probs=128.4

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ++.+.+.+...+|.+|||||||.|.++..++++. +++|+|+++|+++++.+++++...  +...++.+...|.   ++.
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~--~l~~~v~~~~~d~---~~~  123 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEV--DSPRRKEVRIQGW---EEF  123 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHS--CCSSCEEEEECCG---GGC
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhh--ccchhhhhhhhcc---ccc
Confidence            5678888899999999999999999999888764 369999999999999999998876  3356777777775   345


Q ss_pred             CCcceEEEecccccCCCCH---------HHHHHHHHhhccCCcEEEEEEEccCCCCcc------hhhhHHHHHhhhhccc
Q 018003          246 SSSIDAVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNL------IPFSRLLRQVCFLDLK  310 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~---------~~~l~~i~r~LkpgG~li~~~~~~~~~~~~------~~~~~~~~~~~~~~~~  310 (362)
                      +++||.|++..+++|+.++         ..+++++.++|||||++++.+.........      .+........+...+.
T Consensus       124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi  203 (291)
T d1kpia_         124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEI  203 (291)
T ss_dssp             CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred             ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence            7899999999999999874         689999999999999999988765321100      0000000011111112


Q ss_pred             ccccccccCCHHHHHHHHHHCCCEEEEEEEece
Q 018003          311 IVGFSIPVLGFDDLKRIFRQFQLVVNLKLFYGH  343 (362)
Q Consensus       311 ~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~g~  343 (362)
                      .+  ...+.+..++..+++++||++......+.
T Consensus       204 Fp--gg~lps~~~~~~~~e~~gl~v~~~~~~~~  234 (291)
T d1kpia_         204 FP--GGRLPRISQVDYYSSNAGWKVERYHRIGA  234 (291)
T ss_dssp             CT--TCCCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             cC--CCCCCCHHHHHhhhcccccccceeeeccc
Confidence            22  34667899999999999999988776654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=1.6e-20  Score=165.30  Aligned_cols=101  Identities=29%  Similarity=0.364  Sum_probs=91.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec-
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~-  255 (362)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.|+++.         ...++.+|++++|+++++||+|++. 
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~---------~~~~~~~~~~~l~~~~~~fD~ii~~~  110 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKG---------VKNVVEAKAEDLPFPSGAFEAVLALG  110 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHT---------CSCEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCEEEEECCCCchhcccccccce--EEEEeeccccccccccccc---------ccccccccccccccccccccceeeec
Confidence            467999999999999999999875  9999999999999999862         2236789999999999999999985 


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .++||++|+..+|+++.++|||||++++++++.
T Consensus       111 ~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         111 DVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             SHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             chhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            689999999999999999999999999998864

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=1.9e-20  Score=165.68  Aligned_cols=115  Identities=23%  Similarity=0.343  Sum_probs=97.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      ..+.......++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|++++...    ..++.++++|+++++++ 
T Consensus        31 ~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~----~~~i~~~~~d~~~l~~~-  103 (251)
T d1wzna1          31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKER----NLKIEFLQGDVLEIAFK-  103 (251)
T ss_dssp             HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCCEEEESCGGGCCCC-
T ss_pred             HHHHHHhcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccc----cccchheehhhhhcccc-
Confidence            3344445556678999999999999999999876  9999999999999999998876    45899999999999976 


Q ss_pred             CcceEEEec-ccccCCC--CHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          247 SSIDAVHAG-AAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       247 ~~fD~V~~~-~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++||+|++. .+++|+.  ++..+|+++.++|||||++++..++.
T Consensus       104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            589999986 5778874  45689999999999999999977653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=1.3e-19  Score=162.79  Aligned_cols=169  Identities=15%  Similarity=0.079  Sum_probs=129.5

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+.+.+...+|.+|||||||.|.++..+++.. +++|+|+++|+.+++.|+++++..  +...++.+..+|...++  
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~--g~~~~v~~~~~d~~~~~--  125 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANS--ENLRSKRVLLAGWEQFD--  125 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTC--CCCSCEEEEESCGGGCC--
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhh--hhhhhhHHHHhhhhccc--
Confidence            5678888899999999999999999999888774 479999999999999999998776  45679999999987764  


Q ss_pred             CCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccCCCCcc------hhhhHHHHHhhhhcccccccccc
Q 018003          246 SSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNL------IPFSRLLRQVCFLDLKIVGFSIP  317 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~  317 (362)
                       ++||.|++..++||+.+  ...+++++.++|||||++++.+.........      .+....-...+...+..+  ...
T Consensus       126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp--gg~  202 (285)
T d1kpga_         126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP--GGR  202 (285)
T ss_dssp             -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST--TCC
T ss_pred             -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc--CCC
Confidence             68999999999999964  4799999999999999999987753211000      000000000111111222  345


Q ss_pred             cCCHHHHHHHHHHCCCEEEEEEEec
Q 018003          318 VLGFDDLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       318 ~~s~~~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      +.+..++..+++++||++.+....+
T Consensus       203 lPsl~~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         203 LPSIPMVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             CCCHHHHHHHHHTTTCEEEEEEECH
T ss_pred             CCChhhHHHHHHHhchhhcccccch
Confidence            5789999999999999998887665

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.2e-20  Score=164.49  Aligned_cols=156  Identities=12%  Similarity=0.001  Sum_probs=113.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh----C--CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC------CC
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKS----G--LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR------LP  243 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~----~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~------~p  243 (362)
                      .+..+|||||||+|.++..+++.    .  ....++|+|+|+.|++.++++++...+....++.+...+++.      .+
T Consensus        39 ~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (280)
T d1jqea_          39 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEK  118 (280)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTS
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhccc
Confidence            34458999999999997777553    2  234689999999999999999876522222233444444432      34


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHH
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDD  323 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  323 (362)
                      .++++||+|++.++|||++|+..+|+++.++|||||.+++.++....      ....+.......+.... +..+++.++
T Consensus       119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~------~~~~l~~~~~~~~~~~~-~~~~~~~~~  191 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS------GWDKLWKKYGSRFPQDD-LCQYITSDD  191 (280)
T ss_dssp             SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS------HHHHHHHHHGGGSCCCT-TSCCCCHHH
T ss_pred             CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc------hHHHHHHHHHHhcCCCc-ccccCCHHH
Confidence            56789999999999999999999999999999999999999886542      12222222222222223 667889999


Q ss_pred             HHHHHHHCCCEEEEE
Q 018003          324 LKRIFRQFQLVVNLK  338 (362)
Q Consensus       324 l~~ll~~~Gf~~v~~  338 (362)
                      +.++|++.||.....
T Consensus       192 ~~~~L~~~G~~~~~~  206 (280)
T d1jqea_         192 LTQMLDNLGLKYECY  206 (280)
T ss_dssp             HHHHHHHHTCCEEEE
T ss_pred             HHHHHHHCCCceEEE
Confidence            999999999975543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.81  E-value=1.5e-19  Score=159.68  Aligned_cols=105  Identities=20%  Similarity=0.245  Sum_probs=91.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec-
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG-  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~-  255 (362)
                      ++++|||+|||+|.++..+++.+.  +++|+|+|+.|++.|+++....    ..++.++++|+..+++ .++||+|+|. 
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~----~~~v~~~~~d~~~~~~-~~~fD~i~~~~  109 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQ----GLKPRLACQDISNLNI-NRKFDLITCCL  109 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHT----TCCCEEECCCGGGCCC-SCCEEEEEECT
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhcccccccc----Cccceeeccchhhhcc-cccccccceee
Confidence            357999999999999999999987  9999999999999999988776    4689999999998875 4689999975 


Q ss_pred             ccccCCCCH---HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          256 AAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       256 ~vl~h~~d~---~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .+++|+.++   ..++++++++|||||.|++..+..
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~  145 (246)
T d1y8ca_         110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSY  145 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             eeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEeCCH
Confidence            678888755   468999999999999999876543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=4.1e-19  Score=151.64  Aligned_cols=137  Identities=21%  Similarity=0.261  Sum_probs=107.4

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++++|||||||+|.++..+++++.  +|+|+|+|+.+++.++++.+..   ...++.+..+|+..+++ +++||+|++.
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~d~~~~~~-~~~fD~I~~~  102 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAE---GLDNLQTDLVDLNTLTF-DGEYDFILST  102 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT---TCTTEEEEECCTTTCCC-CCCEEEEEEE
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhc---cccchhhhheecccccc-cccccEEEEe
Confidence            3456999999999999999999987  9999999999999999887765   24679999999998875 6789999999


Q ss_pred             ccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHHCCC
Q 018003          256 AAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQL  333 (362)
Q Consensus       256 ~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf  333 (362)
                      .+++|++++.  ++++++.++|+|||++++.+.......   +             ...+ ....++..++++++  .||
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~---~-------------~~~~-~~~~~~~~el~~~~--~~~  163 (198)
T d2i6ga1         103 VVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDF---P-------------CTVG-FPFAFKEGELRRYY--EGW  163 (198)
T ss_dssp             SCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC--------------------------CCCCBCTTHHHHHT--TTS
T ss_pred             eeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccC---C-------------CCCC-CCCccCHHHHHHHh--CCC
Confidence            9999997654  799999999999999999877542110   0             0001 23446666787776  578


Q ss_pred             EEEE
Q 018003          334 VVNL  337 (362)
Q Consensus       334 ~~v~  337 (362)
                      +++.
T Consensus       164 ~i~~  167 (198)
T d2i6ga1         164 DMLK  167 (198)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            6654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.80  E-value=1.9e-19  Score=159.69  Aligned_cols=156  Identities=17%  Similarity=0.211  Sum_probs=115.3

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC-CCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF-ASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~-~~~~fD~V~~~  255 (362)
                      ++.+|||+|||+|..+..+++.+. .+|+|+|+|+.|++.|+++....  ....++.+.++|+...++ ..++||+|++.
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~--~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNM--KRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTS--CCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhc--CCCcceEEEEcchhhhcccccccceEEEEc
Confidence            478999999999999999988764 48999999999999999987764  224579999999977765 46789999999


Q ss_pred             ccccCCCCH----HHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhh--------------------hcccc
Q 018003          256 AAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCF--------------------LDLKI  311 (362)
Q Consensus       256 ~vl~h~~d~----~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~  311 (362)
                      +++||+.++    ..+++++.++|||||++++.+++.+.      ....+.....                    ..+..
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~------i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~  174 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV------ILERYKQGRMSNDFYKIELEKMEDVPMESVREYRF  174 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH------HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHH------HHHHHHhcccCCceEEEecccccCCcCcCceEEEE
Confidence            999998543    47899999999999999999886421      0111000000                    00000


Q ss_pred             ------cccccccCCHHHHHHHHHHCCCEEEEEEEe
Q 018003          312 ------VGFSIPVLGFDDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       312 ------~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~~  341 (362)
                            ........+.+.+.++++++||+.++...+
T Consensus       175 ~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~~f  210 (252)
T d1ri5a_         175 TLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF  210 (252)
T ss_dssp             EETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             EcccccccCcccccCHHHHHHHHHHcCCEEEEEecH
Confidence                  000123456889999999999998876554

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=5.7e-18  Score=147.80  Aligned_cols=152  Identities=16%  Similarity=0.151  Sum_probs=118.8

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC--------------CCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP  228 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--------------~~~  228 (362)
                      ....+.+.+.+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++.....              ...
T Consensus        31 ~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          31 QLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            44456666777777889999999999999999999987  99999999999999998754320              011


Q ss_pred             CCCEEEEEecCCCCC-CCCCcceEEEecccccCCC--CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhh
Q 018003          229 KENFLLVRADISRLP-FASSSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVC  305 (362)
Q Consensus       229 ~~~~~~~~~d~~~~p-~~~~~fD~V~~~~vl~h~~--d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~  305 (362)
                      ..++.++++|+..++ ...+.||+|+...+++|++  +....++++.++|||||++++.+...+...             
T Consensus       109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~-------------  175 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTK-------------  175 (229)
T ss_dssp             TSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTT-------------
T ss_pred             CCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCC-------------
Confidence            357899999998774 5568999999999999995  446899999999999999999887754211             


Q ss_pred             hhcccccccccccCCHHHHHHHHHHCCCEEE
Q 018003          306 FLDLKIVGFSIPVLGFDDLKRIFRQFQLVVN  336 (362)
Q Consensus       306 ~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v  336 (362)
                           ..+ .....+.+++++++.. +|.+.
T Consensus       176 -----~~g-pp~~~~~~el~~lf~~-~~~i~  199 (229)
T d2bzga1         176 -----HPG-PPFYVPHAEIERLFGK-ICNIR  199 (229)
T ss_dssp             -----CCC-SSCCCCHHHHHHHHTT-TEEEE
T ss_pred             -----CCC-CCCCCCHHHHHHHhcC-CCEEE
Confidence                 001 2345789999999864 67553

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.2e-19  Score=158.26  Aligned_cols=149  Identities=15%  Similarity=0.238  Sum_probs=108.3

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCC--------------------------
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK--------------------------  229 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~--------------------------  229 (362)
                      .++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|++++........                          
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            4578999999999998877666542 3799999999999999998765410000                          


Q ss_pred             CCE-EEEEe----cCCCCCCCCCcceEEEecccccCCC----CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHH
Q 018003          230 ENF-LLVRA----DISRLPFASSSIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL  300 (362)
Q Consensus       230 ~~~-~~~~~----d~~~~p~~~~~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~  300 (362)
                      ..+ .....    +....+++.++||+|++..++||+.    ++..+++++.++|||||.+++.++........      
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~------  202 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV------  202 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE------
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee------
Confidence            000 11111    2223456788999999999999996    55689999999999999999998865432100      


Q ss_pred             HHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEEE
Q 018003          301 LRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKLF  340 (362)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~~  340 (362)
                               .....+..+++.++++++|+++||++++...
T Consensus       203 ---------~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~  233 (257)
T d2a14a1         203 ---------GKREFSCVALEKGEVEQAVLDAGFDIEQLLH  233 (257)
T ss_dssp             ---------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             ---------ccccccccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                     0111146678999999999999999877643

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.76  E-value=4.7e-18  Score=147.89  Aligned_cols=145  Identities=11%  Similarity=0.057  Sum_probs=117.0

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCCCcce
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FASSSID  250 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~~~fD  250 (362)
                      .+...+|.+|||+|||+|.++..+++.++.+.|+|+|+|+.|++.++++....     .++..+.+|....+ +.+..+|
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~  143 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-----ENIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC-----TTEEEEECCTTCGGGGTTTCCC
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh-----cccceEEEeeccCcccccccce
Confidence            45577899999999999999999999988889999999999999999986654     78888998887653 4567788


Q ss_pred             EEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHHHH
Q 018003          251 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQ  330 (362)
Q Consensus       251 ~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~  330 (362)
                      ++++...++|..++..+++++.+.|||||.+++............                   +  .-..++..+.|++
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~-------------------~--~~~~~e~~~~L~~  202 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKD-------------------P--KEIFKEQKEILEA  202 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSC-------------------H--HHHHHHHHHHHHH
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCC-------------------H--HHHHHHHHHHHHH
Confidence            888888899999999999999999999999999876542110000                   0  0112567889999


Q ss_pred             CCCEEEEEEEec
Q 018003          331 FQLVVNLKLFYG  342 (362)
Q Consensus       331 ~Gf~~v~~~~~g  342 (362)
                      +||++++.....
T Consensus       203 aGF~ive~idL~  214 (230)
T d1g8sa_         203 GGFKIVDEVDIE  214 (230)
T ss_dssp             HTEEEEEEEECT
T ss_pred             cCCEEEEEecCC
Confidence            999999887653

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=3.2e-18  Score=150.93  Aligned_cols=152  Identities=13%  Similarity=0.097  Sum_probs=118.1

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE
Q 018003          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  236 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  236 (362)
                      +.+++....++.+.+...  ++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++++.+    ..++.+++
T Consensus       102 G~H~TT~l~l~~l~~~~~--~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n----~~~~~~~~  173 (254)
T d2nxca1         102 GHHETTRLALKALARHLR--PGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN----GVRPRFLE  173 (254)
T ss_dssp             CCSHHHHHHHHHHHHHCC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT----TCCCEEEE
T ss_pred             cccchhhHHHHHHHhhcC--ccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHc----CCceeEEe
Confidence            334444555666666654  488999999999999999988875  9999999999999999998877    45678889


Q ss_pred             ecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhccccccccc
Q 018003          237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSI  316 (362)
Q Consensus       237 ~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (362)
                      +|+.. .++.++||+|+++...+.   ...+++++.++|||||+++++....                            
T Consensus       174 ~d~~~-~~~~~~fD~V~ani~~~~---l~~l~~~~~~~LkpGG~lilSgil~----------------------------  221 (254)
T d2nxca1         174 GSLEA-ALPFGPFDLLVANLYAEL---HAALAPRYREALVPGGRALLTGILK----------------------------  221 (254)
T ss_dssp             SCHHH-HGGGCCEEEEEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEG----------------------------
T ss_pred             ccccc-cccccccchhhhcccccc---HHHHHHHHHHhcCCCcEEEEEecch----------------------------
Confidence            88764 345789999999765443   4678899999999999999875421                            


Q ss_pred             ccCCHHHHHHHHHHCCCEEEEEEEeceeEEEEee
Q 018003          317 PVLGFDDLKRIFRQFQLVVNLKLFYGHIQHYIVK  350 (362)
Q Consensus       317 ~~~s~~~l~~ll~~~Gf~~v~~~~~g~~~~~~~~  350 (362)
                        ...+.+.+.++++||+.++....+.+.....+
T Consensus       222 --~~~~~v~~~~~~~Gf~~~~~~~~~~Wv~l~~~  253 (254)
T d2nxca1         222 --DRAPLVREAMAGAGFRPLEEAAEGEWVLLAYG  253 (254)
T ss_dssp             --GGHHHHHHHHHHTTCEEEEEEEETTEEEEEEE
T ss_pred             --hhHHHHHHHHHHCCCEEEEEEEECCEEEEEEe
Confidence              12357888999999999988877765544433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.76  E-value=3.2e-18  Score=145.29  Aligned_cols=120  Identities=15%  Similarity=0.134  Sum_probs=98.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCC---------CCCCCEEEEEec
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------FPKENFLLVRAD  238 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~---------~~~~~~~~~~~d  238 (362)
                      .....+...++.+|||+|||+|..+..|+++|.  +|+|+|+|+.|++.|+++.+....         .......++++|
T Consensus        11 ~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   88 (201)
T d1pjza_          11 QYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   88 (201)
T ss_dssp             HHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence            344556777899999999999999999999987  999999999999999998754310         002456788999


Q ss_pred             CCCCCC-CCCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEccC
Q 018003          239 ISRLPF-ASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVD  289 (362)
Q Consensus       239 ~~~~p~-~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~~~  289 (362)
                      +..++. ....||+|++..+++|+++  ...+++++.++|||||.+++......
T Consensus        89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~  142 (201)
T d1pjza_          89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYD  142 (201)
T ss_dssp             CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSC
T ss_pred             ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccc
Confidence            988763 3468999999999999975  46899999999999999998877653

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=4.9e-18  Score=149.96  Aligned_cols=126  Identities=19%  Similarity=0.213  Sum_probs=110.5

Q ss_pred             CCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE
Q 018003          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  236 (362)
Q Consensus       158 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  236 (362)
                      ...-....+..+...+...||.+|||+|||+|.++..+++. ++.++|+++|+++++++.|+++++...+....++.+++
T Consensus        77 tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~  156 (264)
T d1i9ga_          77 PQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  156 (264)
T ss_dssp             SCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             ccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe
Confidence            33444566788999999999999999999999999999987 78889999999999999999988764233467999999


Q ss_pred             ecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       237 ~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +|+.+.++++++||+|++     |+++|..++.++.++|||||++++..|+.
T Consensus       157 ~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         157 SDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             SCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             cccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence            999988888999999975     68999999999999999999999888764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.73  E-value=4.6e-17  Score=137.30  Aligned_cols=120  Identities=20%  Similarity=0.183  Sum_probs=103.9

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC
Q 018003          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI  239 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~  239 (362)
                      ++.++....++..+.+.++.+|||+|||+|.++..+++.+.  +|+|+|+++++++.|+++++..  +...+++++++|+
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~--gl~~~v~~~~gda   91 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRH--GLGDNVTLMEGDA   91 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHT--TCCTTEEEEESCH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHc--CCCcceEEEECch
Confidence            45566678888899999999999999999999999988765  9999999999999999998886  3346999999999


Q ss_pred             CCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          240 SRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       240 ~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .+.+.....||+|++....++   ...+++++.+.|||||++++...
T Consensus        92 ~~~~~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_          92 PEALCKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             HHHHTTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             hhcccccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEee
Confidence            887777789999999876654   57789999999999999987654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=5.7e-17  Score=137.70  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=101.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      .+.+.+.+...++.+|||+|||+|.++..+++.++  +|+++|+|+.+++.|+++++.. +....++.+..+|..+ +++
T Consensus        41 t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~-~l~~~~i~~~~~d~~~-~~~  116 (194)
T d1dusa_          41 TKILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLN-NLDNYDIRVVHSDLYE-NVK  116 (194)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT-TCTTSCEEEEECSTTT-TCT
T ss_pred             HHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHh-CCccceEEEEEcchhh-hhc
Confidence            35677788888899999999999999999998877  9999999999999999998776 3445679999999876 556


Q ss_pred             CCcceEEEecccccCCCCH-HHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +++||+|+++.++|+..+. ..+++++.++|||||.+++....
T Consensus       117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            8899999999998876654 57899999999999999886543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.4e-18  Score=149.24  Aligned_cols=112  Identities=9%  Similarity=0.187  Sum_probs=92.3

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC--CCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR--LPF  244 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~--~p~  244 (362)
                      +.+.+.+. .+|++|||||||+|..+..+++.++ .+++|+|+|+.+++.|+++....    ..++.++..++..  .++
T Consensus        44 ~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~~~~  117 (229)
T d1zx0a1          44 HALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQ----THKVIPLKGLWEDVAPTL  117 (229)
T ss_dssp             HHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGC----SSEEEEEESCHHHHGGGS
T ss_pred             HHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhc----cccccccccccccccccc
Confidence            34444444 4588999999999999999988753 58999999999999999998776    5677888777643  356


Q ss_pred             CCCcceEEE-----ecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          245 ASSSIDAVH-----AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       245 ~~~~fD~V~-----~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      ++++||.|+     +...++|+.++..+++++.|+|||||+|++.
T Consensus       118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            678899887     5678899999999999999999999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.70  E-value=4.7e-17  Score=142.69  Aligned_cols=116  Identities=20%  Similarity=0.201  Sum_probs=95.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ..+..+...++..||.+|||+|||+|.++..+++. ++.++|+++|.++++++.|++++++.  ....++.+..+|+.+.
T Consensus        72 kD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~--~~~~nv~~~~~Di~~~  149 (250)
T d1yb2a1          72 IDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF--YDIGNVRTSRSDIADF  149 (250)
T ss_dssp             ---------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT--SCCTTEEEECSCTTTC
T ss_pred             HHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--cCCCceEEEEeeeecc
Confidence            33467788888999999999999999999999886 67779999999999999999998875  2367999999999875


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                       ++++.||+|++     ++++|..+++++.++|||||++++..|+
T Consensus       150 -~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         150 -ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             -CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             -cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence             45788999985     5789999999999999999999987764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3.6e-17  Score=145.64  Aligned_cols=149  Identities=17%  Similarity=0.180  Sum_probs=105.9

Q ss_pred             CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCC-------------------------
Q 018003          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-------------------------  229 (362)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------------------------  229 (362)
                      ...+.++||+|||+|.+....+... ..+|+|+|+|+.|++.+++.++...+...                         
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            3467899999999998765444333 23899999999999999988765410000                         


Q ss_pred             --CCEEEEEecCCC------CCCCCCcceEEEecccccCCC----CHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhh
Q 018003          230 --ENFLLVRADISR------LPFASSSIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF  297 (362)
Q Consensus       230 --~~~~~~~~d~~~------~p~~~~~fD~V~~~~vl~h~~----d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~  297 (362)
                        .......+|+..      .+...++||+|++.++|||+.    ++..+++++.++|||||.|++..+........   
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~---  207 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA---  207 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE---
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc---
Confidence              011234456543      234467899999999999995    45789999999999999999988765321100   


Q ss_pred             hHHHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEEEE
Q 018003          298 SRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNLKL  339 (362)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~~~  339 (362)
                                  ........+++.++++++|+++||++++..
T Consensus       208 ------------~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~  237 (263)
T d2g72a1         208 ------------GEARLTVVPVSEEEVREALVRSGYKVRDLR  237 (263)
T ss_dssp             ------------TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ------------CCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence                        000113456899999999999999887654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=2.1e-17  Score=149.39  Aligned_cols=124  Identities=21%  Similarity=0.297  Sum_probs=93.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC-CCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-PKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~d~~~  241 (362)
                      +...+.+.+.++..++.+|||+|||+|.++..|++.|.  +|+|+|+|+.|++.|+++....... ......+..+++..
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            44445666667666678999999999999999999976  9999999999999999887654100 01123444555433


Q ss_pred             CC---CCCCcceEEEec-ccccCCCCH-------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          242 LP---FASSSIDAVHAG-AAIHCWSSP-------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       242 ~p---~~~~~fD~V~~~-~vl~h~~d~-------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ++   ...++||+|++. .+++|++++       ..+|++++++|||||+|++...+.
T Consensus       120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence            21   134679999875 589999764       469999999999999999987654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.66  E-value=2.9e-16  Score=135.11  Aligned_cols=112  Identities=18%  Similarity=0.208  Sum_probs=96.7

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ....+.+.+...++.+|||||||+|.++..+++. ++.+.|+++|+++++++.|+++++..   ...++.++++|....+
T Consensus        63 ~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~---~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL---GIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCC
T ss_pred             hhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh---cccccccccCchHHcc
Confidence            3467788888999999999999999999999876 56679999999999999999998875   3578999999998777


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..+++||+|++..+++|+++      ++.+.|||||++++..
T Consensus       140 ~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         140 PEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred             ccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence            67789999999999999853      4678899999998743

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.66  E-value=2.5e-16  Score=134.90  Aligned_cols=111  Identities=18%  Similarity=0.087  Sum_probs=93.8

Q ss_pred             hcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceE
Q 018003          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDA  251 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~  251 (362)
                      .+..+||.+|||+|||+|..+..+++..+.++|+|+|+|+.|++.++++.+..     .++.++.+|....+.....+|.
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-----~ni~~i~~d~~~~~~~~~~~~~  125 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-----NNIIPLLFDASKPWKYSGIVEK  125 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC-----SSEEEECSCTTCGGGTTTTCCC
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc-----CCceEEEeeccCccccccccce
Confidence            35677899999999999999999999877779999999999999999988775     6999999999887655555544


Q ss_pred             EE-ecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          252 VH-AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       252 V~-~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +. ..+.+.|..++..+++++.++|||||.+++....
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence            43 3355777788899999999999999999998754

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.65  E-value=8.3e-16  Score=136.25  Aligned_cols=118  Identities=23%  Similarity=0.242  Sum_probs=100.6

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS  240 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~  240 (362)
                      ....+..+...++..+|.+|||+|||+|.++..+++. ++.++|+++|+++++++.|+++++..  +...++.+...|+.
T Consensus        88 ypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~--g~~~~v~~~~~d~~  165 (266)
T d1o54a_          88 YPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--GLIERVTIKVRDIS  165 (266)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT--TCGGGEEEECCCGG
T ss_pred             chHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh--ccccCcEEEecccc
Confidence            3456788999999999999999999999999999887 56789999999999999999999876  23467888888864


Q ss_pred             CCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      . .+....||.|+     +|+++|..+++++.++|||||++++..|+
T Consensus       166 ~-~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~  206 (266)
T d1o54a_         166 E-GFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPT  206 (266)
T ss_dssp             G-CCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred             c-cccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence            3 34567788876     57899999999999999999999988764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.64  E-value=6.6e-16  Score=131.56  Aligned_cols=105  Identities=17%  Similarity=0.160  Sum_probs=92.6

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEec
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~  255 (362)
                      +..|||||||+|.++..+++..|+..++|+|+++.++..|.+++...   ...|+.++++|+..+.  ++++++|.|++.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~---~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~  106 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS---EAQNVKLLNIDADTLTDVFEPGEVKRVYLN  106 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS---CCSSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH---hccCchhcccchhhhhcccCchhhhccccc
Confidence            34899999999999999999999999999999999999999988776   3578999999998765  788999999998


Q ss_pred             ccccCCCCH--------HHHHHHHHhhccCCcEEEEEE
Q 018003          256 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       256 ~vl~h~~d~--------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +...|....        ..+|+++.|+|||||.|++.|
T Consensus       107 fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         107 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            887665443        379999999999999999986

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.63  E-value=3.1e-15  Score=130.96  Aligned_cols=158  Identities=13%  Similarity=0.057  Sum_probs=113.0

Q ss_pred             HHHHhhcC-CCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ..+.+... .....+|||||||+|.++..++++.|+.+++..|+ +..++.+         ....++.++.+|+.+ +.+
T Consensus        70 ~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~---------~~~~ri~~~~gd~~~-~~p  138 (244)
T d1fp1d2          70 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA---------PPLSGIEHVGGDMFA-SVP  138 (244)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC---------CCCTTEEEEECCTTT-CCC
T ss_pred             HHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc---------CCCCCeEEecCCccc-ccc
Confidence            44555555 34567999999999999999999999999999998 4444322         235799999999865 333


Q ss_pred             CCcceEEEecccccCCCCHH--HHHHHHHhhccCCcEEEEEEEccCCCCcchhh--hHHHHHhhhhcccccccccccCCH
Q 018003          246 SSSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF--SRLLRQVCFLDLKIVGFSIPVLGF  321 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~--~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~  321 (362)
                        ..|++++.++||+++|..  .+|+++++.|+|||++++.+...+........  +.........  ...  ...-.|.
T Consensus       139 --~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~--~~~--~g~ert~  212 (244)
T d1fp1d2         139 --QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMF--ITV--GGRERTE  212 (244)
T ss_dssp             --CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHH--HHH--SCCCEEH
T ss_pred             --cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHH--hhC--CCcCCCH
Confidence              359999999999998765  78999999999999999998765432111111  1111111110  011  1234689


Q ss_pred             HHHHHHHHHCCCEEEEEEEe
Q 018003          322 DDLKRIFRQFQLVVNLKLFY  341 (362)
Q Consensus       322 ~~l~~ll~~~Gf~~v~~~~~  341 (362)
                      ++|+++|+++||+.++++..
T Consensus       213 ~e~~~ll~~AGF~~v~v~~~  232 (244)
T d1fp1d2         213 KQYEKLSKLSGFSKFQVACR  232 (244)
T ss_dssp             HHHHHHHHHTTCSEEEEEEE
T ss_pred             HHHHHHHHHcCCCceEEEec
Confidence            99999999999999887543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=1.4e-14  Score=125.21  Aligned_cols=111  Identities=12%  Similarity=0.152  Sum_probs=92.0

Q ss_pred             hhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC---CCCC
Q 018003          171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL---PFAS  246 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~---p~~~  246 (362)
                      +.+...||.+|||+|||+|.++..+++. |+.+.|+|+|+++.+++.++++++..     .++..+..|....   +...
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-----~~~~~i~~d~~~~~~~~~~~  141 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-----RNIVPILGDATKPEEYRALV  141 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-----TTEEEEECCTTCGGGGTTTC
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-----CCceEEEEECCCcccccccc
Confidence            3456788999999999999999999987 67789999999999999999987664     6788888888553   3344


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      ..+|+|++  .+.|..++..+++++.+.|||||+++++....
T Consensus       142 ~~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~  181 (227)
T d1g8aa_         142 PKVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSR  181 (227)
T ss_dssp             CCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             cceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEECC
Confidence            67888775  45666788899999999999999999987643

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.6e-15  Score=133.70  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=100.0

Q ss_pred             cHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcC--------CCCCCCE
Q 018003          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------NFPKENF  232 (362)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~--------~~~~~~~  232 (362)
                      ....+..+...++..||.+|||+|||+|.++..+++. ++.++|+++|+++++++.|+++++...        .....++
T Consensus        83 ypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv  162 (324)
T d2b25a1          83 FPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV  162 (324)
T ss_dssp             CHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred             ccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence            3456678888999999999999999999999999986 677899999999999999999887531        1235689


Q ss_pred             EEEEecCCCCC--CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          233 LLVRADISRLP--FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       233 ~~~~~d~~~~p--~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .+..+|+....  +++..||.|+.     .+++|..++.++.++|||||+|++..|+.
T Consensus       163 ~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         163 DFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             EEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             eEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence            99999997653  45678999985     56899999999999999999999887754

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.1e-15  Score=126.71  Aligned_cols=114  Identities=22%  Similarity=0.309  Sum_probs=93.6

Q ss_pred             HHHHhhc--CCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcC--CCCCCCEEEEEecCCC
Q 018003          167 ELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISR  241 (362)
Q Consensus       167 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~  241 (362)
                      ..+++.+  ...+|.+|||||||+|+.+..+++. ++.++|+++|+++++++.|++++++..  +....++.+..+|...
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            5566666  4567999999999999999888875 666799999999999999999887541  0114688999999988


Q ss_pred             CCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          242 LPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .+...+.||+|++..+++++++      ++.+.|||||++++...
T Consensus       144 ~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         144 GYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred             ccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEc
Confidence            7777889999999999998753      46789999999998653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-15  Score=137.75  Aligned_cols=123  Identities=11%  Similarity=0.045  Sum_probs=99.7

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC------CCCCCCEEEEE
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKENFLLVR  236 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~  236 (362)
                      ......+.+.+...++.+|||+|||+|.++..+++..+...++|+|+++.+++.|++..+...      +....++.+++
T Consensus       137 ~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~  216 (328)
T d1nw3a_         137 FDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  216 (328)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE
T ss_pred             HHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE
Confidence            344567788888888999999999999999999887666689999999999999988655420      22356899999


Q ss_pred             ecCCCCCCCCCcc--eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          237 ADISRLPFASSSI--DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       237 ~d~~~~p~~~~~f--D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +|+...++.+..+  |+|++ +.+.|.+++...|.++.+.|||||++++..+
T Consensus       217 gd~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~  267 (328)
T d1nw3a_         217 GDFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKP  267 (328)
T ss_dssp             CCTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             CcccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence            9999988776655  45554 5567778888999999999999999987654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.58  E-value=1.6e-14  Score=122.80  Aligned_cols=105  Identities=20%  Similarity=0.162  Sum_probs=89.0

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--CCCCcceEEEec
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--FASSSIDAVHAG  255 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--~~~~~fD~V~~~  255 (362)
                      ...|||||||+|.++..+++..|+..++|+|+++.++..|.+++...   ...|+.++.+|+..+.  ++++++|.|++.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~---~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~  108 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV---GVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  108 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH---CCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh---ccccceeeecCHHHHhhhccCCceehhccc
Confidence            34899999999999999999999999999999999999999988776   3579999999998875  678899999866


Q ss_pred             ccccCCCCH--------HHHHHHHHhhccCCcEEEEEE
Q 018003          256 AAIHCWSSP--------STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       256 ~vl~h~~d~--------~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +.-.+....        ..+|+.+.++|||||.|++.|
T Consensus       109 fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         109 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            543322211        578999999999999999887

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.56  E-value=2.4e-14  Score=125.22  Aligned_cols=156  Identities=14%  Similarity=0.126  Sum_probs=113.0

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      ..+|||||||+|.++..++++.|..++++.|+ +..++.+.         ...++.++.+|+... .+  .+|++++.++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~---------~~~rv~~~~gD~f~~-~p--~aD~~~l~~v  147 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS---------GSNNLTYVGGDMFTS-IP--NADAVLLKYI  147 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC---------CBTTEEEEECCTTTC-CC--CCSEEEEESC
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc---------ccCceEEEecCcccC-CC--CCcEEEEEee
Confidence            46899999999999999999999999999998 44444332         257999999999763 22  5799999999


Q ss_pred             ccCCCCHH--HHHHHHHhhccCC---cEEEEEEEccCCCCcchh--hhHHHHHhhhhcccccccccccCCHHHHHHHHHH
Q 018003          258 IHCWSSPS--TGVAEISRVLRPG---GVFVGTTYIVDGPFNLIP--FSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQ  330 (362)
Q Consensus       258 l~h~~d~~--~~l~~i~r~Lkpg---G~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~  330 (362)
                      ||+++|..  ++|+++++.|+||   |++++.+...+.......  ....+....+   ...  .....|.++|+++|++
T Consensus       148 LHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m---~~~--~G~ert~~e~~~ll~~  222 (244)
T d1fp2a2         148 LHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNM---ACL--NGKERNEEEWKKLFIE  222 (244)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHG---GGG--TCCCEEHHHHHHHHHH
T ss_pred             cccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHH---HhC--CCcCCCHHHHHHHHHH
Confidence            99998875  7899999999998   778888766543221111  1111111111   111  2345689999999999


Q ss_pred             CCCEEEEEEEeceeEEEEeeC
Q 018003          331 FQLVVNLKLFYGHIQHYIVKI  351 (362)
Q Consensus       331 ~Gf~~v~~~~~g~~~~~~~~k  351 (362)
                      +||+.++++..+.....+..+
T Consensus       223 AGf~~~~i~~~~~~~svIE~~  243 (244)
T d1fp2a2         223 AGFQHYKISPLTGFLSLIEIY  243 (244)
T ss_dssp             TTCCEEEEEEEETTEEEEEEE
T ss_pred             cCCceEEEEECCCCeEEEEEe
Confidence            999999877655544444443

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.56  E-value=1.5e-14  Score=124.61  Aligned_cols=107  Identities=18%  Similarity=0.170  Sum_probs=91.1

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ...+++.+...++.+|||||||+|+++..+++.+.  +|+++|+++++++.|++++...     .++.++.+|.......
T Consensus        59 ~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~-----~nv~~~~~d~~~g~~~  131 (224)
T d1vbfa_          59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYY-----NNIKLILGDGTLGYEE  131 (224)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTC-----SSEEEEESCGGGCCGG
T ss_pred             HHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcc-----cccccccCchhhcchh
Confidence            35677888889999999999999999999998865  9999999999999999987654     7999999998654445


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .++||+|++..+++++++      .+.+.|||||++++-.
T Consensus       132 ~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPI  165 (224)
T ss_dssp             GCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             hhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence            678999999999998853      3567899999998743

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=7.1e-14  Score=127.95  Aligned_cols=103  Identities=20%  Similarity=0.288  Sum_probs=87.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      .++.+|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++..+..  +...++.++++|+..+++++++||+|++.
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~--~~~~~i~~i~~~~~~l~~~~~~~D~i~se  112 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELN--GFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHT--TCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHh--CccccceEEEeehhhccCcccceeEEEEE
Confidence            3578999999999999999998874 4899999996 677888777665  34678999999999999999999999996


Q ss_pred             cccc---CCCCHHHHHHHHHhhccCCcEEE
Q 018003          256 AAIH---CWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       256 ~vl~---h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      .+.+   +......++.++.++|||||+++
T Consensus       113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            6554   44567889999999999999986

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.48  E-value=1.4e-13  Score=120.39  Aligned_cols=159  Identities=11%  Similarity=0.011  Sum_probs=110.3

Q ss_pred             HHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCC
Q 018003          168 LMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFAS  246 (362)
Q Consensus       168 ~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~  246 (362)
                      .+...... ....+|||||||+|.++..++++.|+.++++.|+.+ .++.++         ...++.++.+|+.. +.+.
T Consensus        71 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~---------~~~r~~~~~~d~~~-~~P~  139 (243)
T d1kyza2          71 KILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP---------SYPGVEHVGGDMFV-SIPK  139 (243)
T ss_dssp             HHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC---------CCTTEEEEECCTTT-CCCC
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc---------cCCceEEecccccc-cCCC
Confidence            34444333 335789999999999999999999999999999955 333222         25789999999855 3333


Q ss_pred             CcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEccCCCCc--chhhhHHHHHhhhhcccccccccccCCHH
Q 018003          247 SSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQVCFLDLKIVGFSIPVLGFD  322 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  322 (362)
                        .|+++..+++|+++|.  ..+|+++++.|+|||++++.+........  ..+...........  .... ...-.+.+
T Consensus       140 --ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml--~~~~-~g~ert~~  214 (243)
T d1kyza2         140 --ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIML--AHNP-GGKERTQK  214 (243)
T ss_dssp             --CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHH--HHCS-SCCCEEHH
T ss_pred             --cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHH--hhCC-CCCcCCHH
Confidence              5788899999999865  48899999999999999998766432211  11111111111110  1111 12446899


Q ss_pred             HHHHHHHHCCCEEEEEEEec
Q 018003          323 DLKRIFRQFQLVVNLKLFYG  342 (362)
Q Consensus       323 ~l~~ll~~~Gf~~v~~~~~g  342 (362)
                      +|+++|+++||+.++++...
T Consensus       215 e~~~ll~~AGf~~vkv~~~~  234 (243)
T d1kyza2         215 EFEDLAKGAGFQGFKVHCNA  234 (243)
T ss_dssp             HHHHHHHHHCCSCEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEEeC
Confidence            99999999999998876443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=5.8e-13  Score=117.79  Aligned_cols=137  Identities=12%  Similarity=0.071  Sum_probs=104.5

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      .++..+..... .+.+|||+|||+|..+..++...+..+|+++|+|+.+++.|+++++..   ...++.++++|+.. ++
T Consensus        97 lv~~~l~~~~~-~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~---~~~~v~~~~~d~~~-~~  171 (274)
T d2b3ta1          97 LVEQALARLPE-QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL---AIKNIHILQSDWFS-AL  171 (274)
T ss_dssp             HHHHHHHHSCS-SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH---TCCSEEEECCSTTG-GG
T ss_pred             hhhhHhhhhcc-cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh---Ccccceeeeccccc-cc
Confidence            34445454443 457899999999999999999999999999999999999999999887   23579999999865 45


Q ss_pred             CCCcceEEEeccc-------------ccCCCC------------HHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhH
Q 018003          245 ASSSIDAVHAGAA-------------IHCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR  299 (362)
Q Consensus       245 ~~~~fD~V~~~~v-------------l~h~~d------------~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~  299 (362)
                      ++++||+|+++--             +.|-|.            ...++.+..+.|+|||.+++...             
T Consensus       172 ~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig-------------  238 (274)
T d2b3ta1         172 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-------------  238 (274)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC-------------
T ss_pred             CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEEC-------------
Confidence            5679999999722             222221            13578889999999999997521             


Q ss_pred             HHHHhhhhcccccccccccCCHHHHHHHHHHCCCEEEE
Q 018003          300 LLRQVCFLDLKIVGFSIPVLGFDDLKRIFRQFQLVVNL  337 (362)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v~  337 (362)
                                        +-..+.+.+++++.||..++
T Consensus       239 ------------------~~q~~~v~~~l~~~gf~~i~  258 (274)
T d2b3ta1         239 ------------------WQQGEAVRQAFILAGYHDVE  258 (274)
T ss_dssp             ------------------SSCHHHHHHHHHHTTCTTCC
T ss_pred             ------------------chHHHHHHHHHHHCCCCeEE
Confidence                              12245788999999996543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=2.5e-13  Score=123.54  Aligned_cols=102  Identities=16%  Similarity=0.273  Sum_probs=85.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++++|||||||+|.++..+++.|. .+|+|+|.|+.+ ..+++.+..+  +...++.++++|+.+++++.++||+|++..
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n--~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~  108 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKAN--KLDHVVTIIKGKVEEVELPVEKVDIIISEW  108 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHT--TCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHh--CCccccceEeccHHHcccccceeEEEeeee
Confidence            578999999999999999999874 489999999854 5666655544  346789999999999999889999999876


Q ss_pred             cccCC---CCHHHHHHHHHhhccCCcEEE
Q 018003          257 AIHCW---SSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       257 vl~h~---~d~~~~l~~i~r~LkpgG~li  282 (362)
                      ..+++   .....++..+.++|||||.++
T Consensus       109 ~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         109 MGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            66555   456789999999999999987

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.3e-13  Score=121.70  Aligned_cols=112  Identities=16%  Similarity=0.257  Sum_probs=88.6

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      .+.+.....++.+|||||||+|.++..+++.|. .+|+|+|.|+.+.. +++.....  +...++.++++|+.+++++..
T Consensus        26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~--~~~~~i~~~~~~~~~l~~~~~  101 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLN--KLEDTITLIKGKIEEVHLPVE  101 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHT--TCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHh--CCCccceEEEeeHHHhcCccc
Confidence            344444445688999999999999999999875 58999999998765 44444433  346789999999999998889


Q ss_pred             cceEEEecccccCCC---CHHHHHHHHHhhccCCcEEEE
Q 018003          248 SIDAVHAGAAIHCWS---SPSTGVAEISRVLRPGGVFVG  283 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~---d~~~~l~~i~r~LkpgG~li~  283 (362)
                      +||+|++....+++.   .+..++....++|||||+++-
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            999999977666653   345778888899999999873

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.43  E-value=4e-13  Score=114.75  Aligned_cols=111  Identities=15%  Similarity=0.154  Sum_probs=93.8

Q ss_pred             HHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC
Q 018003          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF  244 (362)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~  244 (362)
                      ....+++.+...++.+|||||||+|+.+..+++.. +.+|+++|.++.+++.|++++...   +..++.++++|...-..
T Consensus        66 ~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~---g~~nv~~~~gd~~~g~~  141 (215)
T d1jg1a_          66 MVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERA---GVKNVHVILGDGSKGFP  141 (215)
T ss_dssp             HHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHT---TCCSEEEEESCGGGCCG
T ss_pred             hHHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHc---CCceeEEEECccccCCc
Confidence            34677888899999999999999999999888762 137999999999999999999876   36899999999977555


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..+.||.|++..+++++++.      +.+.|||||++++..
T Consensus       142 ~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         142 PKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV  176 (215)
T ss_dssp             GGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred             ccCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence            67889999999999987543      456799999998754

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=2.3e-12  Score=110.76  Aligned_cols=114  Identities=20%  Similarity=0.318  Sum_probs=88.8

Q ss_pred             HHHHhhc--CCCCCCeEEEEcCccchHHHHHHHh----C--CCCEEEEEeCCHHHHHHHHHHHhhcC--CCCCCCEEEEE
Q 018003          167 ELMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS----G--LFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVR  236 (362)
Q Consensus       167 ~~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~  236 (362)
                      ..+++.+  ...++.+|||||||+|+++..+++.    |  ...+|+++|.++++++.|++++....  .....++.+..
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            4566666  4567999999999999998888765    1  23489999999999999988764320  00135899999


Q ss_pred             ecCCCCCCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          237 ADISRLPFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       237 ~d~~~~p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +|......+.+.||+|++..+++++++      .+.+.|||||++++...
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred             cccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence            998776556788999999999998764      36789999999987543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.36  E-value=1.3e-11  Score=108.44  Aligned_cols=134  Identities=17%  Similarity=0.206  Sum_probs=103.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASS  247 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~  247 (362)
                      ++...+.  +|.+|||+|||+|.++..+++.+. ++|+++|+++.+++.++++++.+  +...++.++++|+..++ ..+
T Consensus       100 ri~~~~~--~g~~VlD~~aG~G~~~l~~a~~~~-~~V~avd~n~~a~~~~~~N~~~n--~l~~~v~~~~~D~~~~~-~~~  173 (260)
T d2frna1         100 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYGK-AKVIAIEKDPYTFKFLVENIHLN--KVEDRMSAYNMDNRDFP-GEN  173 (260)
T ss_dssp             HHHHHCC--TTCEEEETTCTTTTTHHHHHHHTC-CEEEEECCCHHHHHHHHHHHHHT--TCTTTEEEECSCTTTCC-CCS
T ss_pred             HHHhhcC--CccEEEECcceEcHHHHHHHHhCC-cEEEEecCCHHHHHHHHHHHHHh--CCCceEEEEEcchHHhc-cCC
Confidence            4555544  488999999999999999998863 69999999999999999998876  34567999999998876 357


Q ss_pred             cceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHH
Q 018003          248 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRI  327 (362)
Q Consensus       248 ~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~l  327 (362)
                      .||.|++..-    +....++.++.++|+|||++.+.......                        .......+.+.++
T Consensus       174 ~~D~Ii~~~p----~~~~~~l~~a~~~l~~gG~lh~~~~~~~~------------------------~~~~~~~e~~~~~  225 (260)
T d2frna1         174 IADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK------------------------LMPREPFETFKRI  225 (260)
T ss_dssp             CEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG------------------------GTTTTTHHHHHHH
T ss_pred             CCCEEEECCC----CchHHHHHHHHhhcCCCCEEEEEeccccc------------------------cchhhHHHHHHHH
Confidence            8999987532    34557788999999999998765543210                        1122345678888


Q ss_pred             HHHCCCEE
Q 018003          328 FRQFQLVV  335 (362)
Q Consensus       328 l~~~Gf~~  335 (362)
                      .+..|+.+
T Consensus       226 ~~~~g~~v  233 (260)
T d2frna1         226 TKEYGYDV  233 (260)
T ss_dssp             HHHTTCEE
T ss_pred             HHHcCCce
Confidence            99999965

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1.4e-12  Score=109.29  Aligned_cols=118  Identities=16%  Similarity=0.231  Sum_probs=98.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      .+.+.+++.+.+++.+||++||+|..+..+.+..+++.++|+|.++.|++.|+++++..    ..++.++++++.++.  
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----~~r~~~~~~~f~~~~~~   87 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----SDRVSLFKVSYREADFL   87 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----TTTEEEEECCGGGHHHH
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc----cccccchhHHHhhHHHH
Confidence            45677888889999999999999999999999888889999999999999999998876    578999999987653  


Q ss_pred             ---CCCCcceEEEecccc--c-------CCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 ---FASSSIDAVHAGAAI--H-------CWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl--~-------h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                         +..++||.|+....+  .       .+......|..+.++|+|||.+++.++.
T Consensus        88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence               345789999876443  1       1223347899999999999999987754

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.5e-12  Score=121.06  Aligned_cols=122  Identities=9%  Similarity=0.004  Sum_probs=90.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC------CCCCCCEEE-EE
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKENFLL-VR  236 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------~~~~~~~~~-~~  236 (362)
                      ..+..+.+.+...++.++||+|||+|..+..++...+..+++|+|+++.+++.|+++.+...      +.......+ ..
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            44677888888899999999999999999999887554589999999999999998876420      111223333 34


Q ss_pred             ecCCCCCCC---CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          237 ADISRLPFA---SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       237 ~d~~~~p~~---~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +++...+..   -..+|+|+++. +.|.++....|+++.+.|||||+++...+
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~  334 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKS  334 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred             echhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence            454443311   12467887654 56777888999999999999999987643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.26  E-value=2e-11  Score=110.91  Aligned_cols=117  Identities=14%  Similarity=0.130  Sum_probs=89.0

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----  241 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----  241 (362)
                      ...+...+.  ++.+|||++||+|.++..++..|. .+|+++|+|+.+++.++++++.+  +...+++++++|+.+    
T Consensus       136 r~~~~~~~~--~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~n--gl~~~~~~~~~d~~~~~~~  210 (324)
T d2as0a2         136 RLALEKWVQ--PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLN--GVEDRMKFIVGSAFEEMEK  210 (324)
T ss_dssp             HHHHGGGCC--TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHhhcC--CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHc--CCCccceeeechhhhhhHH
Confidence            344555444  488999999999999999988874 58999999999999999999886  334688999999754    


Q ss_pred             CCCCCCcceEEEecccccCC---------CCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          242 LPFASSSIDAVHAGAAIHCW---------SSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       242 ~p~~~~~fD~V~~~~vl~h~---------~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ++....+||+|++.---.--         .+...++..+.++|||||+|++++-.
T Consensus       211 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         211 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            23346789999985331110         11235788889999999999988643

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.23  E-value=6.7e-12  Score=113.81  Aligned_cols=106  Identities=19%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCCcceE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDA  251 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~~fD~  251 (362)
                      .+|.+|||++||+|.++..++..+.  +|+++|+|+.+++.|+++++.+   +..++.++++|..+.    +...++||+
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~n---gl~~~~~i~~d~~~~~~~~~~~~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLN---GLGNVRVLEANAFDLLRRLEKEGERFDL  218 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHT---TCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHc---CCCCcceeeccHHHHhhhhHhhhcCCCE
Confidence            3588999999999999999887654  9999999999999999999887   246899999998653    344678999


Q ss_pred             EEecccccC---------CCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          252 VHAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       252 V~~~~vl~h---------~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      |++.---..         ..+...++..+.++|||||.|++++-
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            997532110         11223678899999999999998764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.14  E-value=1e-10  Score=105.66  Aligned_cols=108  Identities=13%  Similarity=0.141  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCCcceEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~~fD~V  252 (362)
                      +|.+|||+.||+|.++..++..|. .+|+++|+|+.+++.++++++.+ +....++.++++|+.+.    .-...+||+|
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n-~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEAN-HLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHT-TCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHh-cccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            488999999999999988777664 57999999999999999999876 33346899999998542    2235689999


Q ss_pred             Eeccc--------c-cCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          253 HAGAA--------I-HCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       253 ~~~~v--------l-~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ++.--        + ....+...+++.+.++|+|||.|++++-
T Consensus       222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            97421        0 1111234688899999999999998763

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.12  E-value=9.1e-11  Score=94.64  Aligned_cols=108  Identities=16%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-CCCCCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-PFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~~  255 (362)
                      .|.+|||+|||+|.++..++.+|. .+|+++|.++.+++.++++++..  ....++.++++|+... +...++||+|++.
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~--~~~~~~~ii~~D~~~~l~~~~~~fDiIf~D   90 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMT--KAENRFTLLKMEAERAIDCLTGRFDLVFLD   90 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTT--TCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhc--ccccchhhhcccccccccccccccceeEec
Confidence            578999999999999998888875 59999999999999999998876  3356799999998663 4556789999974


Q ss_pred             ccccCCCCHHHHHHHHH--hhccCCcEEEEEEEcc
Q 018003          256 AAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIV  288 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~--r~LkpgG~li~~~~~~  288 (362)
                      --.. .......+..+.  ++|+|||.+++.....
T Consensus        91 PPy~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          91 PPYA-KETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             CSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hhhc-cchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            3211 011134555553  5799999999886543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.11  E-value=1.7e-10  Score=96.57  Aligned_cols=73  Identities=19%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEE
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAV  252 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V  252 (362)
                      .+.-.|++|||+|||+|.++..++..|. .+|+|+|+++.+++.|+++        ..++.++++|+..++   ++||+|
T Consensus        44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N--------~~~~~~~~~D~~~l~---~~fD~V  111 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN--------CGGVNFMVADVSEIS---GKYDTW  111 (197)
T ss_dssp             HTSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH--------CTTSEEEECCGGGCC---CCEEEE
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc--------cccccEEEEehhhcC---CcceEE
Confidence            3445688999999999999988888775 4899999999999999987        457889999998764   679999


Q ss_pred             Eeccc
Q 018003          253 HAGAA  257 (362)
Q Consensus       253 ~~~~v  257 (362)
                      +++--
T Consensus       112 i~NPP  116 (197)
T d1ne2a_         112 IMNPP  116 (197)
T ss_dssp             EECCC
T ss_pred             EeCcc
Confidence            99743

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.10  E-value=1.3e-10  Score=95.61  Aligned_cols=103  Identities=16%  Similarity=0.155  Sum_probs=73.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC----CCCCCCcceEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR----LPFASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~----~p~~~~~fD~V  252 (362)
                      .+.+|||+|||+|.++..++.+|.  +++++|.++.+++.++++++..    .....+...+...    ......+||+|
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~----~~~~~v~~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRT----GLGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHH----TCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhh----ccccceeeeehhcccccccccCCcccee
Confidence            478999999999999999888876  8999999999999999998876    2233344444322    12345789999


Q ss_pred             EecccccCCCCHHHHHHHH--HhhccCCcEEEEEEEc
Q 018003          253 HAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYI  287 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i--~r~LkpgG~li~~~~~  287 (362)
                      ++.--.+ . +....+.++  ..+|+|||++++..+.
T Consensus       115 f~DPPY~-~-~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         115 FMAPPYA-M-DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EECCCTT-S-CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEccccc-c-CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            9864322 1 222334444  3579999999987653

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.05  E-value=5.8e-10  Score=93.47  Aligned_cols=107  Identities=12%  Similarity=0.111  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCccchHH----HHHHHh----CCCCEEEEEeCCHHHHHHHHHHH------------------hhcCCCC--
Q 018003          177 LGGNIIDASCGSGLFS----RIFAKS----GLFSLVVALDYSENMLKQCYEFV------------------QQESNFP--  228 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~----~~l~~~----~~~~~v~gvD~s~~~~~~a~~~~------------------~~~~~~~--  228 (362)
                      +..+|+++|||+|.-.    ..+.+.    ++..+++|+|+++.+++.|++-.                  ... ...  
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~-~~~~~  102 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRG-TGPHE  102 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEEC-CTTSC
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeec-CCCcc
Confidence            3569999999999843    333332    23347999999999999998421                  110 000  


Q ss_pred             ---------CCCEEEEEecCCCC-CCCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEE
Q 018003          229 ---------KENFLLVRADISRL-PFASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       229 ---------~~~~~~~~~d~~~~-p~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~  284 (362)
                               ...+.+...+.... +.+.+.||+|+|.+||.+++++  .++++.+.+.|+|||+|++-
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                     01233444444332 2345789999999999999876  48999999999999998864

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5.6e-09  Score=90.82  Aligned_cols=82  Identities=11%  Similarity=0.005  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------CCCCcce
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASSSID  250 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------~~~~~fD  250 (362)
                      +..++||+|||+|.....++.+.++.+++|+|+++.+++.|+++++.+  ....++.++..+....-      ..+++||
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n--~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD  138 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN--NLSDLIKVVKVPQKTLLMDALKEESEIIYD  138 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--TCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh--CCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence            346899999999999999998877789999999999999999999886  44667888876654321      2356899


Q ss_pred             EEEecccccC
Q 018003          251 AVHAGAAIHC  260 (362)
Q Consensus       251 ~V~~~~vl~h  260 (362)
                      +|+|+--...
T Consensus       139 ~ivsNPPY~~  148 (250)
T d2h00a1         139 FCMCNPPFFA  148 (250)
T ss_dssp             EEEECCCCC-
T ss_pred             EEEecCcccc
Confidence            9999876543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=9.2e-10  Score=92.76  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=72.9

Q ss_pred             CCCCcHHHHHHH---HhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEE
Q 018003          158 GFPGPEKEFELM---KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLL  234 (362)
Q Consensus       158 ~~~~~~~~~~~l---~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  234 (362)
                      .|+++......+   ....+...|.+|||+|||+|.++..++..|. ..|+|+|+++.+++.++++++..    ..+..+
T Consensus        24 qy~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~----~~~~~~   98 (201)
T d1wy7a1          24 QYRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEF----KGKFKV   98 (201)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGG----TTSEEE
T ss_pred             cCCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHc----CCCceE
Confidence            345555544433   3334455688999999999999998888774 58999999999999999998877    568899


Q ss_pred             EEecCCCCCCCCCcceEEEecccc
Q 018003          235 VRADISRLPFASSSIDAVHAGAAI  258 (362)
Q Consensus       235 ~~~d~~~~p~~~~~fD~V~~~~vl  258 (362)
                      +.+|...+   .+.||+|+++--.
T Consensus        99 ~~~d~~~~---~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          99 FIGDVSEF---NSRVDIVIMNPPF  119 (201)
T ss_dssp             EESCGGGC---CCCCSEEEECCCC
T ss_pred             EECchhhh---CCcCcEEEEcCcc
Confidence            99998765   4679999987654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.04  E-value=3.3e-10  Score=101.11  Aligned_cols=109  Identities=13%  Similarity=0.041  Sum_probs=82.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----CCCCCcceE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----PFASSSIDA  251 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----p~~~~~fD~  251 (362)
                      .++.+|||+.||+|.++..++..|.  +|++||.|+.+++.|+++++.+ +....+++++++|+.+.    ......||+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln-~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLA-GLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHH-TCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhh-cccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            3478999999999999999998875  8999999999999999998876 33345799999998653    123568999


Q ss_pred             EEecc---cc------cCC-CCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          252 VHAGA---AI------HCW-SSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       252 V~~~~---vl------~h~-~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |++.-   .-      ..+ .+...+++.+.++|+|||.+++.+.+
T Consensus       208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            99741   11      111 12245677888999999987777653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=3.7e-10  Score=96.19  Aligned_cols=108  Identities=13%  Similarity=0.147  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-----CCCCcc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FASSSI  249 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-----~~~~~f  249 (362)
                      ++.+|||+|||+|..+..+++.. .+++++++|+++.+++.|++.++..  +...+++++.+|..+. +     +..+.|
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~--gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA--GLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc--CCCccceeeeccccccccchhhccccccc
Confidence            34699999999999999998863 4579999999999999999998876  3356799999998553 2     345679


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |+|+..+.-+. ......+.+..++|||||++++-...
T Consensus       134 D~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Ddvl  170 (214)
T d2cl5a1         134 DMVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADNVI  170 (214)
T ss_dssp             EEEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESCCC
T ss_pred             ceeeecccccc-cccHHHHHHHhCccCCCcEEEEeCcC
Confidence            99997532111 11234577788999999988764433

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=7.2e-09  Score=85.84  Aligned_cols=120  Identities=10%  Similarity=0.107  Sum_probs=88.2

Q ss_pred             HHHHHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          163 EKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       163 ~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      +...+.+...+.. -.+.+|||++||+|.++..++.+|. ..|+.+|.++.+++.++++++..   ...+..++.+|+..
T Consensus        28 ~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~---~~~~~~ii~~d~~~  103 (183)
T d2fpoa1          28 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL---KAGNARVVNSNAMS  103 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT---TCCSEEEECSCHHH
T ss_pred             HHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhc---cccceeeeeecccc
Confidence            3333444444332 2467999999999999999888885 48999999999999999998765   24678899998754


Q ss_pred             C-CCCCCcceEEEecccccCCCCHHHHHHHHHh--hccCCcEEEEEEEc
Q 018003          242 L-PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  287 (362)
Q Consensus       242 ~-p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpgG~li~~~~~  287 (362)
                      . ......||+|++.--.. .......+..+.+  +|+|+|++++....
T Consensus       104 ~l~~~~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~  151 (183)
T d2fpoa1         104 FLAQKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEV  151 (183)
T ss_dssp             HHSSCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred             cccccccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            3 33467899999865422 2344566666654  69999999987653

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.90  E-value=4e-09  Score=92.50  Aligned_cols=119  Identities=16%  Similarity=0.136  Sum_probs=84.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-  242 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-  242 (362)
                      ..++.+.+.....+..+++|+|||+|..+..+++. ++.+|+++|+|+.+++.|+++++..  +...++.+..+|.... 
T Consensus        97 ~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~--~~~~~~~i~~~~~~~~~  173 (271)
T d1nv8a_          97 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERH--GVSDRFFVRKGEFLEPF  173 (271)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHT--TCTTSEEEEESSTTGGG
T ss_pred             hhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHc--CCCceeEEeeccccccc
Confidence            33455555544444568999999999999888764 6789999999999999999999886  3345788888888653 


Q ss_pred             CCCCCcceEEEeccc-------ccC--CCCHH----------HHHHH-HHhhccCCcEEEEEE
Q 018003          243 PFASSSIDAVHAGAA-------IHC--WSSPS----------TGVAE-ISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 p~~~~~fD~V~~~~v-------l~h--~~d~~----------~~l~~-i~r~LkpgG~li~~~  285 (362)
                      +...++||+|+++--       +..  .-+|.          .++++ +.+.|+|||.+++..
T Consensus       174 ~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Ei  236 (271)
T d1nv8a_         174 KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI  236 (271)
T ss_dssp             GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred             ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEE
Confidence            333478999999821       110  01222          22333 557899999988764

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.88  E-value=6.2e-09  Score=86.14  Aligned_cols=124  Identities=19%  Similarity=0.176  Sum_probs=92.7

Q ss_pred             CCcHHHHHHHHhhcCC-CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          160 PGPEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      |..+...+.+...+.. ..+.+|||+.||+|.++..++.+|. ..|+++|.++.+++.++++++..  ....++.++++|
T Consensus        23 Pt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~--~~~~~~~i~~~D   99 (182)
T d2fhpa1          23 PTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAIT--KEPEKFEVRKMD   99 (182)
T ss_dssp             CCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHH--TCGGGEEEEESC
T ss_pred             cCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhh--hccccccccccc
Confidence            4445555666666653 3688999999999999999999885 48999999999999999998765  224589999999


Q ss_pred             CCCC----CCCCCcceEEEecccccCCCCHHHHHHHHHh--hccCCcEEEEEEEc
Q 018003          239 ISRL----PFASSSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  287 (362)
Q Consensus       239 ~~~~----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r--~LkpgG~li~~~~~  287 (362)
                      +...    .-....||+|++.--. +..+....+..+..  +|+|+|++++....
T Consensus       100 ~~~~l~~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         100 ANRALEQFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             chhhhhhhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            8652    1234579999975432 22344567777754  79999999887654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4e-09  Score=89.77  Aligned_cols=110  Identities=14%  Similarity=0.055  Sum_probs=86.8

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C-----CC
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P-----FA  245 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p-----~~  245 (362)
                      ....+.++|||||||+|.-+.++++.-+ +++++.+|.+++..+.|++.++..  +...++.++.+|+.+. +     ..
T Consensus        55 ~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--g~~~~i~~~~Gda~e~l~~~~~~~~  132 (219)
T d2avda1          55 ARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--EAEHKIDLRLKPALETLDELLAAGE  132 (219)
T ss_dssp             HHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--TCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc--CccceEEEEEeehhhcchhhhhhcc
Confidence            3334467999999999999999998743 679999999999999999999876  4467899999997442 1     23


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .++||+|+..+-=   .+-...++.+.++|+|||++++....
T Consensus       133 ~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l  171 (219)
T d2avda1         133 AGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVL  171 (219)
T ss_dssp             TTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             cCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            5689999975421   24457789999999999999986543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.85  E-value=5.9e-09  Score=89.68  Aligned_cols=86  Identities=15%  Similarity=0.279  Sum_probs=71.9

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ...++.+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++..+++....     +++.++.+|+..+
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~-----~n~~i~~~D~l~~   79 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDH-----DNFQVLNKDILQF   79 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTC-----CSEEEECCCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcc-----cchhhhhhhhhhc
Confidence            44567888888888899999999999999999999876  9999999999999999886553     7999999999888


Q ss_pred             CCCCCcceEEEec
Q 018003          243 PFASSSIDAVHAG  255 (362)
Q Consensus       243 p~~~~~fD~V~~~  255 (362)
                      +++......|+++
T Consensus        80 ~~~~~~~~~vv~N   92 (235)
T d1qama_          80 KFPKNQSYKIFGN   92 (235)
T ss_dssp             CCCSSCCCEEEEE
T ss_pred             cccccccceeeee
Confidence            7665544445544

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=1.8e-08  Score=91.21  Aligned_cols=125  Identities=11%  Similarity=0.105  Sum_probs=91.6

Q ss_pred             CCCCcHHHHHHHH----hhcCCCCCCeEEEEcCccchHHHHHHHh-----CCCCEEEEEeCCHHHHHHHHHHHhhcCCCC
Q 018003          158 GFPGPEKEFELMK----GYLKPVLGGNIIDASCGSGLFSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQESNFP  228 (362)
Q Consensus       158 ~~~~~~~~~~~l~----~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~  228 (362)
                      .+++|....+.+.    ..+...++.+|||.|||+|.++..+...     .....++|+|+++.+++.|+..+...    
T Consensus        94 ~~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~----  169 (328)
T d2f8la1          94 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ----  169 (328)
T ss_dssp             GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH----
T ss_pred             eEECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh----
Confidence            3456665544433    3445667789999999999999887653     23347999999999999999887766    


Q ss_pred             CCCEEEEEecCCCCCCCCCcceEEEecccccCCCC------------------HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          229 KENFLLVRADISRLPFASSSIDAVHAGAAIHCWSS------------------PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       229 ~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~d------------------~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ..+.....+|..... ...+||+|+++--......                  ...++..+.+.|+|||++++..|.
T Consensus       170 ~~~~~~~~~d~~~~~-~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~  245 (328)
T d2f8la1         170 RQKMTLLHQDGLANL-LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  245 (328)
T ss_dssp             TCCCEEEESCTTSCC-CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             hhhhhhhcccccccc-ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecC
Confidence            456777888765433 4578999999854322111                  124799999999999999999886

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.71  E-value=2.5e-08  Score=84.74  Aligned_cols=115  Identities=19%  Similarity=0.276  Sum_probs=87.1

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEec
Q 018003          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRAD  238 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d  238 (362)
                      ++|....+.+.+.+...++.+|||.|||+|.++..+.+. .....++|+|+++..+..+            ....+.++|
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~------------~~~~~~~~~   69 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP------------PWAEGILAD   69 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC------------TTEEEEESC
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc------------ccceeeeee
Confidence            467777888999998888999999999999998888765 3345799999998754332            345677888


Q ss_pred             CCCCCCCCCcceEEEecccccCCC----------------------------C-HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          239 ISRLPFASSSIDAVHAGAAIHCWS----------------------------S-PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       239 ~~~~p~~~~~fD~V~~~~vl~h~~----------------------------d-~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ..... ....||+|+++.-.....                            + ...++....+.|||||++.+.+|.
T Consensus        70 ~~~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          70 FLLWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             GGGCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             hhccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            76554 346899999885542211                            0 125678889999999999999886

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=1.1e-07  Score=79.70  Aligned_cols=101  Identities=19%  Similarity=0.168  Sum_probs=86.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEecc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGA  256 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~  256 (362)
                      ++.+|+|+|+|.|.-+..++-..|+.+++.+|.+..-+.+.++.....   +..++.+++..++.+. ...+||+|++..
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L---~L~nv~v~~~R~E~~~-~~~~fD~V~sRA  140 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL---KLENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT---TCSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc---CCcceeeeccchhhhc-cccccceehhhh
Confidence            356999999999999999998888899999999999888888876665   2468999999999875 356899999877


Q ss_pred             cccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          257 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       257 vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +    .++..++.-+...++++|.+++.-
T Consensus       141 ~----~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         141 F----ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             S----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             h----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence            5    667889999999999999998764

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.68  E-value=4.1e-08  Score=83.77  Aligned_cols=105  Identities=10%  Similarity=0.009  Sum_probs=84.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C------CCCCc
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P------FASSS  248 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p------~~~~~  248 (362)
                      +.++|||+|+++|.-+.++++..+ +++++.+|.+++..+.|++.+++.  +...++.++.+++.+. +      ...++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~--g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--GVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--TCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh--ccccceeeeehHHHHHHHHHHhccccCCc
Confidence            357999999999999999997743 679999999999999999999876  3456899999998542 2      12468


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ||+|+...-  + ..-...++.+.++|+|||++++-..
T Consensus       137 fD~iFiDa~--k-~~y~~~~e~~~~ll~~gGiii~DNv  171 (227)
T d1susa1         137 YDFIFVDAD--K-DNYLNYHKRLIDLVKVGGVIGYDNT  171 (227)
T ss_dssp             BSEEEECSC--S-TTHHHHHHHHHHHBCTTCCEEEETT
T ss_pred             eeEEEeccc--h-hhhHHHHHHHHhhcCCCcEEEEccC
Confidence            999997542  1 3456789999999999999997643

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.4e-07  Score=84.58  Aligned_cols=113  Identities=16%  Similarity=0.217  Sum_probs=85.0

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      +..++.+.+++...++.+|||+-||.|.++..|++.+.  +|+|+|.++.+++.|+++++.+   +..++.++.+|.+..
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n---~i~n~~~~~~~~~~~  272 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLN---GLQNVTFYHENLEED  272 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCTTSC
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhc---ccccceeeecchhhh
Confidence            45567777888887889999999999999999998876  9999999999999999998876   367899999998653


Q ss_pred             ----CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          243 ----PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       243 ----p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                          +.....+|+|+..--=.-   ..+.++.+.+. +|.-+++++
T Consensus       273 ~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVS  314 (358)
T d1uwva2         273 VTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVS  314 (358)
T ss_dssp             CSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEE
T ss_pred             hhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEe
Confidence                223467899986311000   02456666654 666666665

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.64  E-value=3.7e-08  Score=88.17  Aligned_cols=111  Identities=17%  Similarity=0.129  Sum_probs=83.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC--CCCCCCEEEEEecCCCC-CCCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPKENFLLVRADISRL-PFASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~d~~~~-p~~~~~fD~V~  253 (362)
                      ..++||.||.|.|..+..+.+..+..+++++|+++.+++.|++.+....  ....++++++.+|+... .-.+++||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            4679999999999999999887667799999999999999999874310  11257899999998653 23356899999


Q ss_pred             ecccccCC-CCH------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAIHCW-SSP------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~-~d~------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ....=.+- ..+      ..+++.+++.|+|||+++.....
T Consensus       157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            64321111 111      47899999999999999876543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.63  E-value=1.8e-09  Score=93.47  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ..++.+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++.+++++..     ..++.++++|+.+++
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~-----~~n~~ii~~D~l~~~   88 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKL-----NTRVTLIHQDILQFQ   88 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTT-----CSEEEECCSCCTTTT
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhh-----ccchhhhhhhhhccc
Confidence            3457888888888899999999999999999999976  999999999999888876543     378999999999998


Q ss_pred             CCCCcceEEEecccccCCCCH
Q 018003          244 FASSSIDAVHAGAAIHCWSSP  264 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~  264 (362)
                      ++...++.|+++-- +|+..+
T Consensus        89 ~~~~~~~~vv~NLP-Y~Ist~  108 (245)
T d1yuba_          89 FPNKQRYKIVGNIP-YHLSTQ  108 (245)
T ss_dssp             CCCSSEEEEEEECC-SSSCHH
T ss_pred             cccceeeeEeeeee-hhhhHH
Confidence            88777777776554 566554

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.62  E-value=5.5e-08  Score=80.03  Aligned_cols=113  Identities=19%  Similarity=0.324  Sum_probs=88.9

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      ++.+.+++.+.+++.++|..+|.|..+..+.+.+  ++|+|+|.++.+++.+++.       ...++.++++++..+.  
T Consensus         7 l~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~-------~~~~~~~~~~~f~~~~~~   77 (182)
T d1wg8a2           7 YQEALDLLAVRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGL-------HLPGLTVVQGNFRHLKRH   77 (182)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHT-------CCTTEEEEESCGGGHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhc-------cccceeEeehHHHHHHHH
Confidence            3566778888899999999999999999999875  4999999999999999874       1468999999887653  


Q ss_pred             ---CCCCcceEEEecccc--cCCCCH-------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 ---FASSSIDAVHAGAAI--HCWSSP-------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl--~h~~d~-------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                         ...+.+|.|++...+  .++.++       ...|.....+|+|||.+++.++.
T Consensus        78 l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          78 LAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             HHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             HHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence               334679999975443  223332       24688888999999999988754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.59  E-value=5.3e-08  Score=85.73  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=82.1

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-------CCCCCCEEEEEecCCCCCCCCCc
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NFPKENFLLVRADISRLPFASSS  248 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~d~~~~p~~~~~  248 (362)
                      .+..+||.+|+|.|..+..+.+.. ..+++++|+++.+++.|++.+....       ....++++++.+|+...--.+++
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~  149 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  149 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence            346799999999999999887754 4689999999999999998764321       12357899999998654223578


Q ss_pred             ceEEEecccccCCCCH-----HHHHHHHHhhccCCcEEEEEEEc
Q 018003          249 IDAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ||+|+.-.. .....+     ..+++.+++.|+|||+++....+
T Consensus       150 yDvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         150 FDVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             EEEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            999997433 222112     47899999999999999876543

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.52  E-value=3.2e-07  Score=75.63  Aligned_cols=108  Identities=15%  Similarity=0.149  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC---CCCCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR---LPFASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~---~p~~~~~fD~V~  253 (362)
                      .+.+|||+-||+|.++..+..+|. ..|+.+|.+..+++..+++++.. +.......+...|...   .......||+|+
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l-~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIF  120 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTL-KCSSEQAEVINQSSLDFLKQPQNQPHFDVVF  120 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT-TCCTTTEEEECSCHHHHTTSCCSSCCEEEEE
T ss_pred             ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhh-cccccccccccccccccccccccCCcccEEE
Confidence            467999999999999999999985 59999999999999999998875 2223456666666422   233456799999


Q ss_pred             ecccccCCCCHHHHHHHHHh--hccCCcEEEEEEEc
Q 018003          254 AGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~~d~~~~l~~i~r--~LkpgG~li~~~~~  287 (362)
                      +.--... ......+..+..  +|+++|.+++....
T Consensus       121 lDPPY~~-~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         121 LDPPFHF-NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             ECCCSSS-CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             echhHhh-hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            8544221 223466776654  79999999988754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.51  E-value=1.3e-07  Score=83.69  Aligned_cols=110  Identities=14%  Similarity=0.088  Sum_probs=82.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      ..++||-||.|.|..+..+.+..+..+++++|+++.+++.|++.+.... ....++++++.+|+... .-..++||+|++
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            3579999999999999999887666799999999999999999765321 11257999999998553 233568999997


Q ss_pred             cccccCC-C----CHHHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCW-S----SPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~-~----d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ...-... +    --..+++.+++.|+|||+++....
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            5321111 1    124789999999999999987643

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.51  E-value=2.2e-07  Score=86.97  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=99.3

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCC-------------CCEEEEEeCCHHHHHHHHHHHhh
Q 018003          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------FSLVVALDYSENMLKQCYEFVQQ  223 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~~~v~gvD~s~~~~~~a~~~~~~  223 (362)
                      +.+++|....+.+.+.+.+.++.+|+|..||+|.++..+.+...             ...++|+|+++.+...|+.++.-
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            56889999999999999988899999999999999987766411             12599999999999999887665


Q ss_pred             cCCCCCCCEEEEEecCCCCCCCCCcceEEEecccccCCC----------------C-HHHHHHHHHhhccCCcEEEEEEE
Q 018003          224 ESNFPKENFLLVRADISRLPFASSSIDAVHAGAAIHCWS----------------S-PSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       224 ~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~vl~h~~----------------d-~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      + +.......+..+|....+ ....||+|+++--...-.                + -..++..+.+.|+|||++.+..|
T Consensus       222 ~-g~~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         222 H-GIGTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             T-TCCSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             c-CCccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence            4 223345567778876543 456899999985542110                0 13689999999999999999988


Q ss_pred             c
Q 018003          287 I  287 (362)
Q Consensus       287 ~  287 (362)
                      .
T Consensus       300 ~  300 (425)
T d2okca1         300 D  300 (425)
T ss_dssp             H
T ss_pred             h
Confidence            5

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.49  E-value=3.7e-07  Score=77.94  Aligned_cols=103  Identities=17%  Similarity=0.090  Sum_probs=84.2

Q ss_pred             CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC---CCCcceEE
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF---ASSSIDAV  252 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~---~~~~fD~V  252 (362)
                      ..+.+|+|||+|.|.-+..++-..|+.+++.+|.+..-+.+.+.-....   ...++.++.+.++.+..   ..+.||+|
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L---~L~n~~i~~~R~E~~~~~~~~~~~~D~v  145 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL---QLENTTFCHDRAETFGQRKDVRESYDIV  145 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---TCSSEEEEESCHHHHTTCTTTTTCEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh---CCCCcEEEeehhhhccccccccccceEE
Confidence            3467999999999999998888778889999999998888777766554   25688999988766532   23579999


Q ss_pred             EecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ++..+    ..+..++.-+...+++||.+++.-
T Consensus       146 ~sRAv----a~l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         146 TARAV----ARLSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             EEECC----SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEhhh----hCHHHHHHHHhhhcccCCEEEEEC
Confidence            99765    678899999999999999998764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.5e-07  Score=80.50  Aligned_cols=110  Identities=13%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      ..++||-+|.|.|..+..+.+..+..+++.+|+++.+++.|++.+.... ....++++++.+|+... .-..++||+|++
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            4679999999999999999887556799999999999999999864310 12258999999997543 223568999997


Q ss_pred             cccccCCCCH-----HHHHHHHHhhccCCcEEEEEEEc
Q 018003          255 GAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       255 ~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      -.. .-...+     ..+++.+++.|+|||++++....
T Consensus       158 D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         158 DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             ECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            532 111111     26799999999999999987654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=3.2e-07  Score=80.36  Aligned_cols=110  Identities=14%  Similarity=0.111  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      ...+||-||.|.|..+..+.+..+..+++.+|+++..++.|++.+.... ....+++.++.+|.... .-.+.+||+|+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            3579999999999999999887556799999999999999999874321 12367999999998542 223568999997


Q ss_pred             cccccCCC----CHHHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~----d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      -..-..-+    --..+++.+++.|+|||+++....
T Consensus       155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~  190 (274)
T d1iy9a_         155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTD  190 (274)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecC
Confidence            64311100    124789999999999999987643

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.40  E-value=1.9e-06  Score=76.84  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=89.2

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      ......+.+.+|.+|||+.||.|.=+..++... ..+.+++.|.++..++..++++++.   +..++.....|...++..
T Consensus       106 ~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~---~~~~i~~~~~d~~~~~~~  182 (313)
T d1ixka_         106 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL---GVLNVILFHSSSLHIGEL  182 (313)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH---TCCSEEEESSCGGGGGGG
T ss_pred             cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH---Hhhccccccccccccccc
Confidence            344556778899999999999999887777653 3468999999999999999988877   346787888887777666


Q ss_pred             CCcceEEEec------ccccCCCC------H----------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          246 SSSIDAVHAG------AAIHCWSS------P----------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       246 ~~~fD~V~~~------~vl~h~~d------~----------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ...||.|+.-      +++..-++      +          ..+|.+..+.|||||.++.+|=.
T Consensus       183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS  246 (313)
T d1ixka_         183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  246 (313)
T ss_dssp             CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence            7889999963      22322222      1          15688999999999999988743

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.38  E-value=4.6e-07  Score=79.98  Aligned_cols=110  Identities=18%  Similarity=0.195  Sum_probs=83.4

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCCC--CCCCcceEEE
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRLP--FASSSIDAVH  253 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~p--~~~~~fD~V~  253 (362)
                      ...+||-||.|.|..++.+.+..+..+++++|+++++++.|++.+.... ....+++.++.+|....-  ..+++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            4579999999999999999887666789999999999999999764210 122689999999975431  2356899999


Q ss_pred             ecccccCCCC-----HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          254 AGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       254 ~~~vl~h~~d-----~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .... .....     -..+++.+++.|+|||+++....+
T Consensus       160 ~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         160 VDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             ECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            7433 11111     147899999999999999987543

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=4e-06  Score=68.49  Aligned_cols=99  Identities=20%  Similarity=0.250  Sum_probs=75.9

Q ss_pred             CCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------CCC
Q 018003          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------FAS  246 (362)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------~~~  246 (362)
                      .++.+|||+||+.|.++..+.+. +....++++|+.+-              ....++.++.+|+....        ...
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~--------------~~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM--------------DPIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC--------------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc--------------cccCCceEeecccccchhhhhhhhhccC
Confidence            56889999999999999988875 45578999998762              12578899999997632        245


Q ss_pred             CcceEEEecccccCCCCH-----------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          247 SSIDAVHAGAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~-----------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +.+|+|++-.+..--.+.           ...+.-+.++||+||.+++-.+..
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence            679999998775443332           155777789999999999988753

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.35  E-value=4.1e-07  Score=77.57  Aligned_cols=107  Identities=18%  Similarity=0.178  Sum_probs=70.7

Q ss_pred             HHHHHhhcCCCCCCeEEEEcCccchHHHHHHH----hCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC
Q 018003          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR  241 (362)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~  241 (362)
                      +..+...++   +.+|||||++.|.-+..++.    .+..++++|+|+++........        ...++.++++|...
T Consensus        72 ~~eli~~~K---Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          72 YHDMLWELR---PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------DMENITLHQGDCSD  140 (232)
T ss_dssp             HHHHHHHHC---CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------GCTTEEEEECCSSC
T ss_pred             HHHHHHHhC---CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------cccceeeeeccccc
Confidence            344444444   46999999999986655543    3566799999998754333222        15789999999865


Q ss_pred             CC----CCCCcceEEEecccccCCCCHH-HHHHHHHhhccCCcEEEEEEE
Q 018003          242 LP----FASSSIDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       242 ~p----~~~~~fD~V~~~~vl~h~~d~~-~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ..    +....+|.|+.-.. |+ .+.. .-+ +...+|+|||++++.+.
T Consensus       141 ~~~~~~l~~~~~dlIfID~~-H~-~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         141 LTTFEHLREMAHPLIFIDNA-HA-NTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             SGGGGGGSSSCSSEEEEESS-CS-SHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             HHHHHHHHhcCCCEEEEcCC-cc-hHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            43    33456888876543 33 3322 223 46689999999998753

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.4e-06  Score=76.07  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=70.6

Q ss_pred             HHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC
Q 018003          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP  243 (362)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p  243 (362)
                      ..++.+.+.+...++..|||||+|+|.++..+++.+.  +++++|+++.+++..++.+...  ....++.++.+|+...+
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~~--~~~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGT--PVASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTS--TTGGGEEEEESCTTTSC
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhhh--ccccchhhhHHHHhhhh
Confidence            4457778888888889999999999999999999986  9999999999999999987653  22368999999998876


Q ss_pred             CCCCcceEEEec
Q 018003          244 FASSSIDAVHAG  255 (362)
Q Consensus       244 ~~~~~fD~V~~~  255 (362)
                      ++.  ++.|+++
T Consensus        84 ~~~--~~~vV~N   93 (278)
T d1zq9a1          84 LPF--FDTCVAN   93 (278)
T ss_dssp             CCC--CSEEEEE
T ss_pred             hhh--hhhhhcc
Confidence            543  4566655

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.34  E-value=3.1e-07  Score=81.51  Aligned_cols=109  Identities=13%  Similarity=0.110  Sum_probs=81.2

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-CCCCCCEEEEEecCCCC-CCCCCcceEEEe
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKENFLLVRADISRL-PFASSSIDAVHA  254 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~d~~~~-p~~~~~fD~V~~  254 (362)
                      ..++||-||.|.|..++.+.+..+..+++.+|+++.+++.|++.+.... ....+++.++.+|.... .-..++||+|+.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            3579999999999999999887666799999999999999999864321 12257999999998553 223568999997


Q ss_pred             cccccCCCCH-----HHHHHHHHhhccCCcEEEEEEE
Q 018003          255 GAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       255 ~~vl~h~~d~-----~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      ...-. ...+     ..+++.+++.|+|||+++....
T Consensus       186 D~~dp-~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         186 DSSDP-VGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             CCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred             cCCCC-CCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            54321 1111     3679999999999999997643

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.9e-06  Score=74.65  Aligned_cols=117  Identities=19%  Similarity=0.164  Sum_probs=86.2

Q ss_pred             HHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-CCC
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-FAS  246 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-~~~  246 (362)
                      .....+.+.++.+|||+.+|.|.=+..++..+.++.++++|+++..++..++++++.   +..++.....|..... ...
T Consensus        93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~---g~~~~~~~~~~~~~~~~~~~  169 (284)
T d1sqga2          93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL---GMKATVKQGDGRYPSQWCGE  169 (284)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT---TCCCEEEECCTTCTHHHHTT
T ss_pred             ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc---cccceeeeccccccchhccc
Confidence            344567788899999999999999999988877789999999999999999998887   1334444444433221 234


Q ss_pred             CcceEEEec------ccccCCCCH----------------HHHHHHHHhhccCCcEEEEEEEc
Q 018003          247 SSIDAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       247 ~~fD~V~~~------~vl~h~~d~----------------~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      +.||.|+.-      +++..-++.                ..+|.++.+.|||||+++.+|=.
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS  232 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  232 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence            679999953      334333332                26788999999999999988744

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=4.9e-07  Score=78.12  Aligned_cols=75  Identities=7%  Similarity=0.129  Sum_probs=63.6

Q ss_pred             HHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC
Q 018003          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL  242 (362)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~  242 (362)
                      ...++.+.+.+...++..|||||||+|.++..+++.+.  +++++|+++.+++..+++...     ..++.++.+|+..+
T Consensus         7 ~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~-----~~~~~ii~~D~l~~   79 (252)
T d1qyra_           7 QFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHPFL-----GPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCTTT-----GGGEEEECSCGGGC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHhhh-----ccchhHHhhhhhhh
Confidence            34567788888888899999999999999999999876  999999999999999875443     36899999999876


Q ss_pred             CC
Q 018003          243 PF  244 (362)
Q Consensus       243 p~  244 (362)
                      ++
T Consensus        80 ~~   81 (252)
T d1qyra_          80 NF   81 (252)
T ss_dssp             CH
T ss_pred             cc
Confidence            53

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.25  E-value=2.5e-07  Score=60.46  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=39.8

Q ss_pred             cccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      ...+++|+||.|+++|....         ..+.+.|+.|+..|++.+|++.++.++
T Consensus         5 ~~LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~~~YPI~dgIPvLL~de   51 (59)
T d2jnya1           5 PQLLEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDE   51 (59)
T ss_dssp             GGGTCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred             HHHHHHhcCCCCCCEeEEeC---------CCCEEEcCccCccccccCCccccCHHH
Confidence            35788999999999997654         236899999999999999999888763

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=98.25  E-value=1.5e-07  Score=61.25  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      +.+++++||.|+++|....         ..+.+.|..|+..|++.+|++.++.++
T Consensus         2 kLL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~laYPI~dGIPvlL~~e   47 (59)
T d2pk7a1           2 KLLDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE   47 (59)
T ss_dssp             CGGGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             chHhheECCCCCCcceEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence            4678899999999998754         236799999999999999999888764

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=98.15  E-value=3e-07  Score=59.92  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=38.9

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCcccccCCceeeeecCC
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~~g~~~~~~~~  121 (362)
                      ..+++++||.|+++|....         ..+.+.|..|+..|++.+|++.++.+.
T Consensus         3 ~LL~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~l~YPI~dGIPvlL~~e   48 (59)
T d2hf1a1           3 KFLEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE   48 (59)
T ss_dssp             CCEEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             hHhhhhcCCCCCCeeeEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence            3568899999999998754         236799999999999999999988764

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=2.7e-06  Score=81.50  Aligned_cols=130  Identities=12%  Similarity=0.043  Sum_probs=91.9

Q ss_pred             CCCCCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHh----CC--------------CCEEEEEeCCHHHHHHHH
Q 018003          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GL--------------FSLVVALDYSENMLKQCY  218 (362)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~--------------~~~v~gvD~s~~~~~~a~  218 (362)
                      +.+++|....+.+.+.+.+.++.+|+|-.||+|.|+..+.+.    ..              ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            678999999999999999988999999999999998776553    10              125899999999999998


Q ss_pred             HHHhhcCCCC---CCCEEEEEecCCCCC-CCCCcceEEEecccccC--C-----------CC-HHHHHHHHHhhccCCcE
Q 018003          219 EFVQQESNFP---KENFLLVRADISRLP-FASSSIDAVHAGAAIHC--W-----------SS-PSTGVAEISRVLRPGGV  280 (362)
Q Consensus       219 ~~~~~~~~~~---~~~~~~~~~d~~~~p-~~~~~fD~V~~~~vl~h--~-----------~d-~~~~l~~i~r~LkpgG~  280 (362)
                      -++--+. ..   .....+..++....+ .....||+|+++--+.-  .           .+ -..++..+.+.|||||+
T Consensus       224 ~nl~l~~-~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr  302 (524)
T d2ar0a1         224 MNCLLHD-IEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR  302 (524)
T ss_dssp             HHHHTTT-CCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             HHHHhhc-ccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCc
Confidence            7765441 00   011223334433221 23467999999854311  0           11 12689999999999999


Q ss_pred             EEEEEEc
Q 018003          281 FVGTTYI  287 (362)
Q Consensus       281 li~~~~~  287 (362)
                      +.+..|.
T Consensus       303 ~aiIlP~  309 (524)
T d2ar0a1         303 AAVVVPD  309 (524)
T ss_dssp             EEEEEEH
T ss_pred             EEEEEeh
Confidence            9999885

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.9e-05  Score=68.30  Aligned_cols=116  Identities=13%  Similarity=0.064  Sum_probs=81.3

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC--
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA--  245 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~--  245 (362)
                      ....+.+.+|.+|||+++|.|.-+..++.. +....++++|+++.-++..++++++.   +..++.+...|...++..  
T Consensus        86 ~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~---g~~~~~~~~~d~~~~~~~~~  162 (293)
T d2b9ea1          86 PAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA---GVSCCELAEEDFLAVSPSDP  162 (293)
T ss_dssp             HHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT---TCCSEEEEECCGGGSCTTCG
T ss_pred             cccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc---Cccceeeeehhhhhhccccc
Confidence            344567788999999999999988777765 34468999999999999999998887   357889999998765422  


Q ss_pred             -CCcceEEEec------ccccCCCC-----------H-------HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          246 -SSSIDAVHAG------AAIHCWSS-----------P-------STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       246 -~~~fD~V~~~------~vl~h~~d-----------~-------~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                       .+.||.|+..      +++-.-++           .       ..++.... .|+|||.++.+|=..
T Consensus       163 ~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         163 RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence             2579999964      22221111           0       12344444 479999988877543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.93  E-value=0.00012  Score=61.64  Aligned_cols=115  Identities=13%  Similarity=0.090  Sum_probs=70.8

Q ss_pred             HHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCCCCCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISRLPFA  245 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~~p~~  245 (362)
                      ..+.+.....++++|+|+|||.|.++..++.......+.|+++--...+   +-.... .....-+.+... |+..+  +
T Consensus        56 ~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e---~P~~~~-~~~~ni~~~~~~~dv~~l--~  129 (257)
T d2p41a1          56 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE---EPIPMS-TYGWNLVRLQSGVDVFFI--P  129 (257)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC---CCCCCC-STTGGGEEEECSCCTTTS--C
T ss_pred             HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc---CCcccc-ccccccccchhhhhHHhc--C
Confidence            3444444556788999999999999999998865557888887322100   000000 000111233222 33333  4


Q ss_pred             CCcceEEEecccccCCCCHH-------HHHHHHHhhccCCcEEEEEEEcc
Q 018003          246 SSSIDAVHAGAAIHCWSSPS-------TGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~-------~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      .+..|+|+|-.+ ++-+++.       .+|+-+.+.|+|||.|++-...+
T Consensus       130 ~~~~D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p  178 (257)
T d2p41a1         130 PERCDTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  178 (257)
T ss_dssp             CCCCSEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CCcCCEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence            678999999865 3444543       56777789999999999877654

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.93  E-value=3.3e-05  Score=70.21  Aligned_cols=104  Identities=17%  Similarity=0.092  Sum_probs=79.1

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCC-------------CCCCEEEEEecCCCCC-
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF-------------PKENFLLVRADISRLP-  243 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------~~~~~~~~~~d~~~~p-  243 (362)
                      +.+|||..||+|..+..++.......|+..|+|+.+++.++++++.+. .             ....+.+.+.|+..+. 
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~-~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNF-DGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHC-CSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcC-ccccccccccccccccceeEeehhhhhhhhH
Confidence            569999999999999877665545689999999999999999987661 1             0123555666653332 


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      -....||+|..    .-+..|..+|..+.+.++.||.|.++..
T Consensus       125 ~~~~~fDvIDi----DPfGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         125 ERHRYFHFIDL----DPFGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HSTTCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhcCcCCcccC----CCCCCcHHHHHHHHHHhccCCEEEEEec
Confidence            12456999985    3466888999999999999999998754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.28  E-value=0.0015  Score=52.19  Aligned_cols=103  Identities=16%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC----
Q 018003          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL----  242 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~----  242 (362)
                      .+.+.....++.+||=+|||. |..+..+++......++.+|.++.-++.+++.         .-..++..+-.+.    
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~---------Ga~~~i~~~~~~~~~~i   89 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL---------GATHVINSKTQDPVAAI   89 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH---------TCSEEEETTTSCHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc---------CCeEEEeCCCcCHHHHH
Confidence            445566778899999999986 55666666553234788999999999999874         1122333222221    


Q ss_pred             -CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          243 -PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       243 -p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       .+.++.||+|+-     ....+ ..++...++++|+|++++..
T Consensus        90 ~~~t~gg~D~vid-----~~G~~-~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          90 KEITDGGVNFALE-----STGSP-EILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHTTSCEEEEEE-----CSCCH-HHHHHHHHTEEEEEEEEECC
T ss_pred             HHHcCCCCcEEEE-----cCCcH-HHHHHHHhcccCceEEEEEe
Confidence             122457998873     33333 56889999999999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.0019  Score=51.87  Aligned_cols=103  Identities=21%  Similarity=0.245  Sum_probs=67.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---  243 (362)
                      .+.+....++|.+||-+|+|. |.+...+++..-..+|+++|.+++.++.+++.         .--..+...-....   
T Consensus        19 al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l---------Ga~~vi~~~~~~~~~~~   89 (182)
T d1vj0a2          19 AFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI---------GADLTLNRRETSVEERR   89 (182)
T ss_dssp             HHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc---------cceEEEeccccchHHHH
Confidence            344555567799999999985 77777777763223899999999999999873         11122221111110   


Q ss_pred             ------CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                            .....+|+|+-.     ...+ ..++...+.|+|||++++.-
T Consensus        90 ~~i~~~~~~~g~Dvvid~-----vG~~-~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2          90 KAIMDITHGRGADFILEA-----TGDS-RALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             HHHHHHTTTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHhhCCCCceEEeec-----CCch-hHHHHHHHHhcCCCEEEEEe
Confidence                  112358998743     3233 35788899999999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.18  E-value=0.0038  Score=49.39  Aligned_cols=102  Identities=17%  Similarity=0.088  Sum_probs=68.2

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      +.....++.+||-+|||. |.++..+++.. +.+|+++|.+++-++.|++.        .....+...+.....      
T Consensus        20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~--------ga~~~~~~~~~~~~~~~~~~~   90 (170)
T d1e3ja2          20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC--------GADVTLVVDPAKEEESSIIER   90 (170)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT--------TCSEEEECCTTTSCHHHHHHH
T ss_pred             HHhCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc--------CCcEEEeccccccccchhhhh
Confidence            344567799999999995 77777777663 46999999999999999884        122222221111110      


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                         ...+.+|+|+-.     ... ...+....++|+|+|++++....
T Consensus        91 ~~~~~g~g~D~vid~-----~g~-~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2          91 IRSAIGDLPNVTIDC-----SGN-EKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             HHHHSSSCCSEEEEC-----SCC-HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             hhcccccCCceeeec-----CCC-hHHHHHHHHHHhcCCceEEEecC
Confidence               112458888743     223 35688899999999999986543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00029  Score=56.28  Aligned_cols=100  Identities=10%  Similarity=0.050  Sum_probs=65.2

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe-cCCC-CCCCCCc
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA-DISR-LPFASSS  248 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-d~~~-~p~~~~~  248 (362)
                      .....++.+||-+|+|. |.++..+++.. +++++++|.+++.++.+++.        ... .++.. +-.. .....+.
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~l--------Ga~-~~i~~~~~~~~~~~~~~~   91 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKM--------GAD-HYIATLEEGDWGEKYFDT   91 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHH--------TCS-EEEEGGGTSCHHHHSCSC
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhcc--------CCc-EEeeccchHHHHHhhhcc
Confidence            34667899999999994 77777776652 45999999999999998874        111 22221 1111 1122456


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ||+|+..-.-.+-    ..+....+.|+|+|++++..
T Consensus        92 ~d~vi~~~~~~~~----~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          92 FDLIVVCASSLTD----IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEEEECCSCSTT----CCTTTGGGGEEEEEEEEECC
T ss_pred             cceEEEEecCCcc----chHHHHHHHhhccceEEEec
Confidence            9988764332221    12456789999999998864

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.0006  Score=60.41  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=56.5

Q ss_pred             HHHHHHHHhhcCC------CCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE
Q 018003          163 EKEFELMKGYLKP------VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR  236 (362)
Q Consensus       163 ~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  236 (362)
                      ...++.+.+.+..      ..+.+|||||+|.|.++..+.+.+...+++++|+++...+..++.+.      ..++.++.
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------~~~~~ii~   96 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------GSPLQILK   96 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------TSSCEEEC
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------CCCcEEEe
Confidence            3445566655432      24668999999999999999887433489999999999999888753      35789999


Q ss_pred             ecCCCC
Q 018003          237 ADISRL  242 (362)
Q Consensus       237 ~d~~~~  242 (362)
                      +|+..+
T Consensus        97 ~D~l~~  102 (322)
T d1i4wa_          97 RDPYDW  102 (322)
T ss_dssp             SCTTCH
T ss_pred             Cchhhc
Confidence            998653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.97  E-value=0.0035  Score=49.83  Aligned_cols=131  Identities=18%  Similarity=0.135  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CCCCc
Q 018003          175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FASSS  248 (362)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~~~~  248 (362)
                      ..++.+||-+|+|. |.....+++......++++|.+++-++.+++.         ....++..+-+...     .....
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~---------ga~~~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL---------GADHVVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCHHHHHHHHTTTCC
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc---------ccceeecCcccHHHHHHHhhCCCC
Confidence            45688999999987 55656666542235899999999988888873         22233332211110     12345


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEccCCCCcchhhhHHHHHhhhhcccccccccccCCHHHHHHHH
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQVCFLDLKIVGFSIPVLGFDDLKRIF  328 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll  328 (362)
                      +|+|+-.-     ... ..++...+.|++||++++.-...+.  .. +...    .+.......+  ....+.+++++++
T Consensus       101 ~d~vid~~-----g~~-~~~~~a~~~l~~~G~iv~~G~~~~~--~~-~~~~----l~~k~~~i~G--s~~~~~~d~~~~l  165 (172)
T d1h2ba2         101 VNVAMDFV-----GSQ-ATVDYTPYLLGRMGRLIIVGYGGEL--RF-PTIR----VISSEVSFEG--SLVGNYVELHELV  165 (172)
T ss_dssp             EEEEEESS-----CCH-HHHHHGGGGEEEEEEEEECCCSSCC--CC-CHHH----HHHTTCEEEE--CCSCCHHHHHHHH
T ss_pred             ceEEEEec-----Ccc-hHHHHHHHHHhCCCEEEEEeCcccc--cC-CHHH----HHhCCcEEEE--EEecCHHHHHHHH
Confidence            89887433     333 3589999999999999986533221  11 1111    1111113333  3456777777776


Q ss_pred             H
Q 018003          329 R  329 (362)
Q Consensus       329 ~  329 (362)
                      +
T Consensus       166 ~  166 (172)
T d1h2ba2         166 T  166 (172)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.94  E-value=0.0028  Score=51.65  Aligned_cols=104  Identities=16%  Similarity=0.135  Sum_probs=70.2

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      +....++|.+||-+|||. |..+..+++......|+++|.++..++.|++.          ....+. +....+      
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~~~-~~~~~~~~~~i~   87 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIAD-LSLDTPLHEQIA   87 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEE-TTSSSCHHHHHH
T ss_pred             HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccEEE-eCCCcCHHHHHH
Confidence            345667899999999998 66777777664446899999999999999873          222222 221111      


Q ss_pred             --CCCCcceEEEecccccC---------CCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h---------~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                        .....+|+++-.-..+-         .......++.+.++++|||++++.-
T Consensus        88 ~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G  140 (195)
T d1kola2          88 ALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  140 (195)
T ss_dssp             HHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             HHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence              12346899885432111         0123468999999999999998874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.87  E-value=0.003  Score=49.78  Aligned_cols=97  Identities=15%  Similarity=0.109  Sum_probs=63.6

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----CC
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----FA  245 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----~~  245 (362)
                      ....+++.+||=+|+|. |..+..+++.. +.+|+++|.+++.++.+++.         .-...+..+-.+..     ..
T Consensus        22 ~~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~---------Ga~~~i~~~~~~~~~~~~~~~   91 (166)
T d1llua2          22 QTNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKL---------GASLTVNARQEDPVEAIQRDI   91 (166)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT---------TCSEEEETTTSCHHHHHHHHH
T ss_pred             HhCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhcc---------CccccccccchhHHHHHHHhh
Confidence            45677899999999986 77777777764 36999999999999988873         12223322222110     11


Q ss_pred             CCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          246 SSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .+.+|.|.+..      .+ ..+....+.|+|||++++.-
T Consensus        92 ~g~~~~i~~~~------~~-~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          92 GGAHGVLVTAV------SN-SAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             SSEEEEEECCS------CH-HHHHHHHTTEEEEEEEEECC
T ss_pred             cCCcccccccc------cc-hHHHHHHHHhcCCcEEEEEE
Confidence            23334444322      23 46888999999999998764

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.85  E-value=0.0056  Score=54.47  Aligned_cols=157  Identities=13%  Similarity=0.032  Sum_probs=92.4

Q ss_pred             CeEEEEcCccchHHHHH--------HHh--------CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCC--EEEEEecCC
Q 018003          179 GNIIDASCGSGLFSRIF--------AKS--------GLFSLVVALDYSENMLKQCYEFVQQESNFPKEN--FLLVRADIS  240 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l--------~~~--------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--~~~~~~d~~  240 (362)
                      -+|.|+||.+|.++..+        .+.        -+..+|+--|+-.+--...-+.+... +....+  +.-+.+.+.
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~-~~~~~~~f~~gvpGSFY  131 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE-NDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS-CSCTTCEEEEEEESCSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccc-ccCCCCeEEEecCCchh
Confidence            57999999999876322        111        23456778886554333322222221 000111  233445666


Q ss_pred             CCCCCCCcceEEEecccccCCCC---------------------------------HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          241 RLPFASSSIDAVHAGAAIHCWSS---------------------------------PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       241 ~~p~~~~~fD~V~~~~vl~h~~d---------------------------------~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      .--||+++.|++++..+||++..                                 ...+|+.=++-|+|||++++....
T Consensus       132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g  211 (359)
T d1m6ex_         132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence            65688999999999999999842                                 124677777889999999999887


Q ss_pred             cCCCCcch-------hhhHH-HHHhhhh------cccccccccccCCHHHHHHHHHHCCCEEE
Q 018003          288 VDGPFNLI-------PFSRL-LRQVCFL------DLKIVGFSIPVLGFDDLKRIFRQFQLVVN  336 (362)
Q Consensus       288 ~~~~~~~~-------~~~~~-~~~~~~~------~~~~~~~~~~~~s~~~l~~ll~~~Gf~~v  336 (362)
                      .+......       ..+.. +.+....      .+........+.+.++++..+++.|.-.+
T Consensus       212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i  274 (359)
T d1m6ex_         212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLI  274 (359)
T ss_dssp             CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCC
T ss_pred             cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeee
Confidence            64321110       11111 1111110      01111125677899999999999887333

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.85  E-value=0.0038  Score=49.39  Aligned_cols=100  Identities=14%  Similarity=0.129  Sum_probs=66.2

Q ss_pred             hhcCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-----
Q 018003          171 GYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-----  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-----  243 (362)
                      +..+..++.+||=+|+ | .|..+..+++......|+++|.+++-++.+++.        ... ..+..+-.+..     
T Consensus        21 ~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~--------Ga~-~~i~~~~~~~~~~~~~   91 (170)
T d1jvba2          21 RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA--------GAD-YVINASMQDPLAEIRR   91 (170)
T ss_dssp             HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHHHHH
T ss_pred             HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc--------CCc-eeeccCCcCHHHHHHH
Confidence            4456778999999997 4 466666555553335999999999999998874        111 23332222210     


Q ss_pred             -CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       ...+.||+|+....      -...++...+.++|||++++.-
T Consensus        92 ~~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          92 ITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             HTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECC
T ss_pred             Hhhcccchhhhcccc------cchHHHhhhhhcccCCEEEEec
Confidence             12356998885432      2345788899999999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0082  Score=47.42  Aligned_cols=102  Identities=18%  Similarity=0.164  Sum_probs=67.6

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      +.....++.+||=+|+|. |.++..+++.....+|+++|.++..++.|++.         .--.++..+-....      
T Consensus        20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~---------Ga~~~~~~~~~~~~~~~~~~   90 (171)
T d1pl8a2          20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI---------GADLVLQISKESPQEIARKV   90 (171)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---------TCSEEEECSSCCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh---------CCcccccccccccccccccc
Confidence            344667789999999987 66666666664334899999999999999873         11122222222211      


Q ss_pred             --CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 --FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                        -....+|+|+-     ....+ ..++...+.+++||++++....
T Consensus        91 ~~~~g~g~Dvvid-----~~G~~-~~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          91 EGQLGCKPEVTIE-----CTGAE-ASIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             HHHHTSCCSEEEE-----CSCCH-HHHHHHHHHSCTTCEEEECSCC
T ss_pred             cccCCCCceEEEe-----ccCCc-hhHHHHHHHhcCCCEEEEEecC
Confidence              01245888874     33333 4688999999999999886543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0053  Score=48.49  Aligned_cols=99  Identities=15%  Similarity=0.100  Sum_probs=65.6

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCC-CCCCCCc
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISR-LPFASSS  248 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~-~p~~~~~  248 (362)
                      +..+.++|.+||=+|+|. |.++..+++.. +.+++++|.+++-++.+++.         ....++...-.. .....+.
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~l---------Gad~~i~~~~~~~~~~~~~~   93 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL---------GADEVVNSRNADEMAAHLKS   93 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH---------TCSEEEETTCHHHHHTTTTC
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhcc---------CCcEEEECchhhHHHHhcCC
Confidence            345677899999999986 77877777763 45889999999888888764         111222211111 1112356


Q ss_pred             ceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          249 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       249 fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +|+++-.-.-.      ..+....++|+|+|++++..
T Consensus        94 ~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          94 FDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred             Cceeeeeeecc------hhHHHHHHHHhcCCEEEEec
Confidence            99887543222      23677889999999999864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.65  E-value=0.0035  Score=50.03  Aligned_cols=100  Identities=11%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             hhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------
Q 018003          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------  243 (362)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------  243 (362)
                      +....+++.+||=+|||. |..+..+++..-..+|+++|.+++-++.+++.         .-..++...-+...      
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l---------Ga~~~i~~~~~~~~~~v~~~   91 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY---------GATDILNYKNGHIEDQVMKL   91 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH---------TCSEEECGGGSCHHHHHHHH
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh---------CccccccccchhHHHHHHHH
Confidence            445667899999999997 88888888764224799999999999999874         11122222111110      


Q ss_pred             CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      .....+|+|+-.     ...+ ..+++..+.++|+|++++.-
T Consensus        92 t~g~G~D~vid~-----~g~~-~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          92 TNGKGVDRVIMA-----GGGS-ETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TTTSCEEEEEEC-----SSCT-THHHHHHHHEEEEEEEEECC
T ss_pred             hhccCcceEEEc-----cCCH-HHHHHHHHHHhcCCEEEEEe
Confidence            112459988743     3233 35788899999999999864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.64  E-value=0.011  Score=47.01  Aligned_cols=103  Identities=15%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----
Q 018003          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----  243 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----  243 (362)
                      +.+....+++.+||=+|||. |.++..+++..-...|+.+|.++..++.|++.         .....+...-.+..    
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~---------Ga~~~i~~~~~~~~~~~~   90 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL---------GATDCLNPRELDKPVQDV   90 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHHH
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh---------CCCcccCCccchhhhhhh
Confidence            34455667899999999998 88888888875445899999999999888883         22222322111111    


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  286 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~~  286 (362)
                         ...+.+|+|+     +....+ ..+.+..+.|+|| |++++.-.
T Consensus        91 ~~~~~~~G~d~vi-----e~~G~~-~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          91 ITELTAGGVDYSL-----DCAGTA-QTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             HHHHHTSCBSEEE-----ESSCCH-HHHHHHHHTBCTTTCEEEECCC
T ss_pred             HhhhhcCCCcEEE-----Eecccc-hHHHHHHHHhhcCCeEEEecCC
Confidence               1235688886     443344 4689999999996 99988643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.43  E-value=0.016  Score=45.87  Aligned_cols=103  Identities=12%  Similarity=0.021  Sum_probs=63.5

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---  243 (362)
                      .+.+..+.+++.+||=+|||. |.....+++......|+++|.+++-++.+++.         .-..++...-.+..   
T Consensus        18 a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l---------Ga~~~i~~~~~d~~~~~   88 (174)
T d1p0fa2          18 AAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL---------GATECLNPKDYDKPIYE   88 (174)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc---------CCcEEEcCCCchhHHHH
Confidence            344555677899999999997 55555555543235899999999999999873         22223322111111   


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhc-cCCcEEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTT  285 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~L-kpgG~li~~~  285 (362)
                          ...+.+|+|+-.     ...+. .+.+....+ +++|.+++.-
T Consensus        89 ~~~~~~~~G~d~vid~-----~g~~~-~~~~~~~~~~~~~G~~v~vG  129 (174)
T d1p0fa2          89 VICEKTNGGVDYAVEC-----AGRIE-TMMNALQSTYCGSGVTVVLG  129 (174)
T ss_dssp             HHHHHTTSCBSEEEEC-----SCCHH-HHHHHHHTBCTTTCEEEECC
T ss_pred             HHHHhcCCCCcEEEEc-----CCCch-HHHHHHHHHHHhcCceEEEE
Confidence                123468888743     33444 455555555 5568888764

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=96.37  E-value=0.0044  Score=52.26  Aligned_cols=92  Identities=14%  Similarity=0.052  Sum_probs=63.8

Q ss_pred             HHHhhcCCCCC--CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCC------CCCEEEEEecC
Q 018003          168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP------KENFLLVRADI  239 (362)
Q Consensus       168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~------~~~~~~~~~d~  239 (362)
                      .+.+.++..++  .+|||.-||.|..+..++..|.  +|+++|-++.+....++.+++.....      ..+++++.+|.
T Consensus        77 ~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds  154 (250)
T d2oyra1          77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (250)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcH
Confidence            45555554333  4899999999999999999875  99999999977666555443220000      23789999997


Q ss_pred             CC-CCCCCCcceEEEecccccCC
Q 018003          240 SR-LPFASSSIDAVHAGAAIHCW  261 (362)
Q Consensus       240 ~~-~p~~~~~fD~V~~~~vl~h~  261 (362)
                      .+ +.-..++||+|+.--.+.+-
T Consensus       155 ~~~L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         155 LTALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             HHHSTTCSSCCSEEEECCCCCCC
T ss_pred             HHHHhccCCCCCEEEECCCCccc
Confidence            44 33235679999987766543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.36  E-value=0.014  Score=46.34  Aligned_cols=103  Identities=13%  Similarity=0.068  Sum_probs=65.0

Q ss_pred             HHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCC---
Q 018003          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP---  243 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p---  243 (362)
                      +.+....+++.+||=+|||. |.+...+++..-..+|+++|.+++.++.|++.=        .. .++. .|.....   
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G--------A~-~~in~~~~~~~~~~~   91 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG--------AT-ECISPKDSTKPISEV   91 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT--------CS-EEECGGGCSSCHHHH
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC--------Cc-EEECccccchHHHHH
Confidence            44555667899999999997 555666666543358999999999999999861        11 1221 1211110   


Q ss_pred             ---CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ---FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                         .....+|+|+-     ....+......+..+++++|++++.-
T Consensus        92 ~~~~~g~G~d~vi~-----~~g~~~~~~~a~~~~~~~~G~~v~vG  131 (176)
T d1d1ta2          92 LSEMTGNNVGYTFE-----VIGHLETMIDALASCHMNYGTSVVVG  131 (176)
T ss_dssp             HHHHHTSCCCEEEE-----CSCCHHHHHHHHTTSCTTTCEEEECS
T ss_pred             HHHhccccceEEEE-----eCCchHHHHHHHHHhhcCCeEEEEEE
Confidence               12346888774     33455554555555666769888764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.023  Score=44.77  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=66.2

Q ss_pred             HHhhcCCCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003          169 MKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---  243 (362)
                      +.+....+++.+||-.|+  |.|..+..+++.. +.++++++-+++..+.+++.         .--.++  |..+..   
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~---------Ga~~vi--~~~~~~~~~   87 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQN---------GAHEVF--NHREVNYID   87 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---------TCSEEE--ETTSTTHHH
T ss_pred             HHHHhCCCCCCEEEEEecccccccccccccccc-Cccccccccccccccccccc---------Cccccc--ccccccHHH
Confidence            444556678999999996  3577777777663 35999999999888888763         111222  222211   


Q ss_pred             -----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          244 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       244 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                           .....+|+|+..-.       ...+.+..++|+|+|+++..
T Consensus        88 ~i~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          88 KIKKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HhhhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence                 12456999885432       34688899999999999975

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.11  E-value=0.057  Score=46.55  Aligned_cols=116  Identities=14%  Similarity=0.028  Sum_probs=76.1

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCC-C----
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRL-P----  243 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~-p----  243 (362)
                      +.+.+... ...|+.+|||.-.-...+ ....+..++=+|. +++++.-++.+.+.......+...+..|+..- +    
T Consensus        82 ~~~~~~~g-~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~  158 (297)
T d2uyoa1          82 FNNAVIDG-IRQFVILASGLDSRAYRL-DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALR  158 (297)
T ss_dssp             HHHHHHTT-CCEEEEETCTTCCHHHHS-CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHH
T ss_pred             HHHHHhhC-CCeEEEeCcccCChhhhc-CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHH
Confidence            33444332 235667999987665554 2234557888885 77887777777765323345678888888642 1    


Q ss_pred             ---CCCCcceEEEecccccCCCC--HHHHHHHHHhhccCCcEEEEEEEc
Q 018003          244 ---FASSSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       244 ---~~~~~fD~V~~~~vl~h~~d--~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                         +.....=++++-.++.+++.  ...+|+.+.....||+.+++....
T Consensus       159 ~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         159 SAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             HTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             hcCCCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence               22233346777778888864  358899999999999999887543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.86  E-value=0.023  Score=44.36  Aligned_cols=96  Identities=22%  Similarity=0.136  Sum_probs=61.7

Q ss_pred             hcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------C
Q 018003          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------F  244 (362)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------~  244 (362)
                      .....++.+||=.|+|. |.....+++.. +.+|+++|.+++-++.+++.          ....+........      .
T Consensus        22 ~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~----------Ga~~~~~~~~~~~~~~~~~~   90 (168)
T d1rjwa2          22 VTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL----------GADLVVNPLKEDAAKFMKEK   90 (168)
T ss_dssp             HHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT----------TCSEEECTTTSCHHHHHHHH
T ss_pred             HhCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhc----------Ccceecccccchhhhhcccc
Confidence            34567799999999987 55566666553 45999999999999988773          1122222221110      1


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                      ..+.+|+|.. .+     . ...+....+.|+|||.+++..
T Consensus        91 ~~~~~~~v~~-~~-----~-~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          91 VGGVHAAVVT-AV-----S-KPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HSSEEEEEES-SC-----C-HHHHHHHHHHEEEEEEEEECC
T ss_pred             cCCCceEEee-cC-----C-HHHHHHHHHHhccCCceEecc
Confidence            1233444432 21     2 356899999999999998864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.76  E-value=0.013  Score=49.03  Aligned_cols=59  Identities=17%  Similarity=0.157  Sum_probs=51.3

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHh
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~  222 (362)
                      -|...++++.+... .+|..|||.=||+|..+.+..+.+.  +.+|+|++++.++.|++++.
T Consensus       197 kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            45677788887775 4588999999999999999998887  99999999999999999875

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.51  E-value=0.0041  Score=35.47  Aligned_cols=30  Identities=30%  Similarity=0.685  Sum_probs=24.1

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCcccccC
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~~  111 (362)
                      -.||.|++.....+          ...+.|+.|++.+...
T Consensus         4 P~CP~C~seytYed----------g~l~vCPeC~hEW~~~   33 (38)
T d2akla2           4 PPCPQCNSEYTYED----------GALLVCPECAHEWSPN   33 (38)
T ss_dssp             CCCTTTCCCCCEEC----------SSSEEETTTTEEECTT
T ss_pred             CcCCCCCCcceEcC----------CCEEECCcccCcCCcc
Confidence            45999999887654          3689999999988763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.37  E-value=0.038  Score=43.20  Aligned_cols=89  Identities=15%  Similarity=0.213  Sum_probs=59.7

Q ss_pred             eEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          180 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       180 ~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +|+=||||.  |.++..+.+.++..+|+|+|.+++.++.+++.         ..+.....+....  .....|+|+..--
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~---------~~~~~~~~~~~~~--~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---------GIIDEGTTSIAKV--EDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG--GGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh---------hcchhhhhhhhhh--hccccccccccCC
Confidence            588899996  45777888888777999999999999999873         2222222222221  2335788885432


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      .+   .-..++.++.+.++++..++
T Consensus        72 ~~---~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          72 VR---TFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             HH---HHHHHHHHHHHHSCTTCEEE
T ss_pred             ch---hhhhhhhhhhcccccccccc
Confidence            11   23467888889998876554

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.26  E-value=0.015  Score=50.41  Aligned_cols=61  Identities=11%  Similarity=0.042  Sum_probs=52.2

Q ss_pred             CCcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhh
Q 018003          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (362)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~  223 (362)
                      +-|...++++.+.... +|..|||.=||+|..+.++.+.|.  ..+|+|++++.++.|++++.+
T Consensus       234 ~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         234 RFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             cCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            3457778888877654 688999999999999999999887  999999999999999988654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.00  E-value=0.13  Score=40.01  Aligned_cols=103  Identities=13%  Similarity=0.036  Sum_probs=65.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---  243 (362)
                      .+.+....++|.+||=.|||. |.++..+++..-...|+++|.+++.++.+++.         .-...+..+-....   
T Consensus        19 al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l---------Ga~~~i~~~~~~~~~~~   89 (176)
T d2fzwa2          19 AAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF---------GATECINPQDFSKPIQE   89 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH---------TCSEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh---------CCcEEEeCCchhhHHHH
Confidence            344555677899999999884 55555555553235899999999999888874         11222222111111   


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                          ...+.+|+|+-.-     .. ...++....++++||.+++..
T Consensus        90 ~~~~~~~~g~D~vid~~-----G~-~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2          90 VLIEMTDGGVDYSFECI-----GN-VKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             HHHHHTTSCBSEEEECS-----CC-HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHHcCCCCcEeeecC-----CC-HHHHHHHHHhhcCCceeEEEE
Confidence                1235689988533     22 356888999999998776553

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.92  E-value=0.34  Score=37.94  Aligned_cols=102  Identities=9%  Similarity=-0.087  Sum_probs=68.7

Q ss_pred             HHHHhhcCCCCCCeEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003          167 ELMKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-  243 (362)
                      ..+.+..+.++|.+||=.|++.  |..+..+++.. +++|++++-+++..+.+++.         ..-..+.-+-+... 
T Consensus        19 ~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~---------Ga~~vi~~~~~~~~~   88 (182)
T d1v3va2          19 FGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQI---------GFDAAFNYKTVNSLE   88 (182)
T ss_dssp             HHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---------TCSEEEETTSCSCHH
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhh---------hhhhhcccccccHHH
Confidence            3455666777899999888754  66777777764 36999999999888887773         12222322222210 


Q ss_pred             -----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~  285 (362)
                           ...+.+|+|+-     ++.  ...+++..+.|+|+|.++..-
T Consensus        89 ~~~~~~~~~Gvd~v~D-----~vG--~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          89 EALKKASPDGYDCYFD-----NVG--GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             HHHHHHCTTCEEEEEE-----SSC--HHHHHHHGGGEEEEEEEEECC
T ss_pred             HHHHHhhcCCCceeEE-----ecC--chhhhhhhhhccCCCeEEeec
Confidence                 12456999873     332  356899999999999999753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.67  E-value=0.012  Score=46.16  Aligned_cols=98  Identities=16%  Similarity=0.139  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEec
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~  255 (362)
                      ++.+|+=+|+|. |..+...+... +.+|+.+|.+++.+++.+..+...       +.....+-+.+.-.-...|+|+..
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~~~~-------~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLFGSR-------VELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHGGG-------SEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhhccc-------ceeehhhhhhHHHhhccCcEEEEe
Confidence            467999999997 66666555542 469999999999999888765443       444444332222112358999987


Q ss_pred             ccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          256 AAIHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       256 ~vl~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      -.+.--+-|.-+-+++.+.+|||.+++
T Consensus       103 alipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         103 VLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             eecCCcccCeeecHHHHhhcCCCcEEE
Confidence            776655667777889999999999876

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.66  E-value=0.21  Score=38.93  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             HHHhhcCCCCCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEE-ecCCCCC--
Q 018003          168 LMKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVR-ADISRLP--  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~d~~~~p--  243 (362)
                      .+.+....++|.+||=+|+|. |.....+++......|+++|.+++-.+.+++.         .....+. .+..+..  
T Consensus        19 al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~---------Ga~~~i~~~~~~~~~~~   89 (176)
T d2jhfa2          19 SAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV---------GATECVNPQDYKKPIQE   89 (176)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCSEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh---------CCeeEEecCCchhHHHH
Confidence            345556677899999999975 44455555554446999999999999988874         1122222 1222210  


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  285 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~~  285 (362)
                          ...+.+|+|+-.-.     .+ ..++.....+++| |.+++..
T Consensus        90 ~~~~~~~~G~D~vid~~G-----~~-~~~~~a~~~~~~~~g~~~~~~  130 (176)
T d2jhfa2          90 VLTEMSNGGVDFSFEVIG-----RL-DTMVTALSCCQEAYGVSVIVG  130 (176)
T ss_dssp             HHHHHTTSCBSEEEECSC-----CH-HHHHHHHHHBCTTTCEEEECS
T ss_pred             HHHHHhcCCCCEEEecCC-----ch-hHHHHHHHHHhcCCcceEEec
Confidence                22356898875432     33 4467777788886 5555443

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.63  E-value=0.041  Score=46.48  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=52.8

Q ss_pred             CcHHHHHHHHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhc
Q 018003          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (362)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~  224 (362)
                      -|...++++.+... .+|..|||.=||+|..+.+..+.+.  +.+|+|+++...+.|++++...
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            45677777777664 4688999999999999999999887  9999999999999999998765

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.016  Score=36.78  Aligned_cols=35  Identities=11%  Similarity=0.217  Sum_probs=24.9

Q ss_pred             cccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        66 ~~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      ...+..+.||.|++.-....        ...+.+.|..||.+.
T Consensus         6 ~~~~~~~~Cp~Cgs~~ii~D--------~~~Ge~vC~~CG~Vl   40 (58)
T d1dl6a_           6 LDALPRVTCPNHPDAILVED--------YRAGDMICPECGLVV   40 (58)
T ss_dssp             CCCCSCCSBTTBSSSCCEEC--------SSSCCEECTTTCCEE
T ss_pred             cccccccCCCCCCCCCEEEE--------CCCCcEecccCCCEe
Confidence            44567789999998743222        134789999999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.76  E-value=0.18  Score=39.55  Aligned_cols=100  Identities=15%  Similarity=0.125  Sum_probs=64.7

Q ss_pred             HHHhhcCCCCCCeEEEEcC-c-cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          168 LMKGYLKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      .+.+....+++.+||=.|. | .|.++..+++.. +.++++++-+++-.+.+++.        ... ..+...-.++.  
T Consensus        16 al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~--------Ga~-~vi~~~~~~~~~~   85 (183)
T d1pqwa_          16 SLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRL--------GVE-YVGDSRSVDFADE   85 (183)
T ss_dssp             HHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTT--------CCS-EEEETTCSTHHHH
T ss_pred             HHHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccc--------ccc-ccccCCccCHHHH
Confidence            3445556677899998773 3 477777777663 35999998888877777752        111 22221111110  


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                          .....||+|+..-.     .  ..++++.++|+++|+++..
T Consensus        86 v~~~t~~~g~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          86 ILELTDGYGVDVVLNSLA-----G--EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHHHTTTCCEEEEEECCC-----T--HHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHhCCCCEEEEEeccc-----c--hHHHHHHHHhcCCCEEEEE
Confidence                12356999996443     2  3578889999999999875

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.58  E-value=0.22  Score=43.98  Aligned_cols=81  Identities=9%  Similarity=0.003  Sum_probs=52.0

Q ss_pred             cCCCCCCeEEEEcCccchHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC
Q 018003          173 LKPVLGGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA  245 (362)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~  245 (362)
                      +...+...|+|+|+|+|.++..+....       ...+++-+|+|+...+.-++++...     .++.++ .++..+|. 
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~-----~~i~w~-~~~~~~~~-  147 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI-----RNIHWH-DSFEDVPE-  147 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC-----SSEEEE-SSGGGSCC-
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhccc-----ccceec-cChhhccc-
Confidence            344345689999999999987765531       2346899999998777777665443     455543 44444431 


Q ss_pred             CCcceEEEecccccCCC
Q 018003          246 SSSIDAVHAGAAIHCWS  262 (362)
Q Consensus       246 ~~~fD~V~~~~vl~h~~  262 (362)
                        ..-+|+++..+..+|
T Consensus       148 --~~g~iiaNE~fDAlP  162 (365)
T d1zkda1         148 --GPAVILANEYFDVLP  162 (365)
T ss_dssp             --SSEEEEEESSGGGSC
T ss_pred             --CCeEEEecccCcccc
Confidence              125677776666554

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=93.41  E-value=0.22  Score=38.88  Aligned_cols=102  Identities=10%  Similarity=0.033  Sum_probs=66.4

Q ss_pred             HHHhhcCCCCCCeEEEEcCc--cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--
Q 018003          168 LMKGYLKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--  243 (362)
                      .+.+....+++.+||=.|+|  .|..+..+++.. +.+|++++.+++-.+.+++.        ... .++...-.++.  
T Consensus        19 al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~l--------Ga~-~vi~~~~~d~~~~   88 (179)
T d1qora2          19 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKA--------GAW-QVINYREEDLVER   88 (179)
T ss_dssp             HHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHH--------TCS-EEEETTTSCHHHH
T ss_pred             HHHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhc--------CCe-EEEECCCCCHHHH
Confidence            34444556778999998666  467777777763 35999999999999988874        111 22222112211  


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                          -....+|+|+..-.-       ..+....+.|+|+|++++...
T Consensus        89 v~~~t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          89 LKEITGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             HHHHTTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred             HHHHhCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeeccc
Confidence                124568988754432       247788999999999876543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.36  E-value=0.19  Score=38.68  Aligned_cols=85  Identities=12%  Similarity=0.122  Sum_probs=55.7

Q ss_pred             eEEEEcCcc--chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCCCCcceEEEeccc
Q 018003          180 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFASSSIDAVHAGAA  257 (362)
Q Consensus       180 ~vLDiGcG~--G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~fD~V~~~~v  257 (362)
                      +|.=||+|.  +.++..+.+.|.  +|+++|.+++.++.+++.         ..+.....+.+.+    ...|+|+..--
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~---------~~~~~~~~~~~~~----~~~DiIilavp   66 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVER---------QLVDEAGQDLSLL----QTAKIIFLCTP   66 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---------TSCSEEESCGGGG----TTCSEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHh---------hccceeeeecccc----cccccccccCc
Confidence            677889984  456777888777  999999999988887763         1121222222222    35788885321


Q ss_pred             ccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          258 IHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       258 l~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                      .   ..-..+++++...|+++-+++
T Consensus        67 ~---~~~~~vl~~l~~~l~~~~iv~   88 (165)
T d2f1ka2          67 I---QLILPTLEKLIPHLSPTAIVT   88 (165)
T ss_dssp             H---HHHHHHHHHHGGGSCTTCEEE
T ss_pred             H---hhhhhhhhhhhhhccccccee
Confidence            1   123477888888888887664

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.29  E-value=0.54  Score=36.28  Aligned_cols=102  Identities=15%  Similarity=0.076  Sum_probs=61.1

Q ss_pred             HHHhhcCCCCCCeEEEEcCccch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---
Q 018003          168 LMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---  243 (362)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---  243 (362)
                      .+.+....+++.+||=+|+|.+. ....+++..-...|+++|.+++-++.+++.         .-..++..+-+...   
T Consensus        19 a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~---------GAd~~in~~~~~~~~~~   89 (175)
T d1cdoa2          19 AAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF---------GATDFVNPNDHSEPISQ   89 (175)
T ss_dssp             HHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT---------TCCEEECGGGCSSCHHH
T ss_pred             HHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc---------CCcEEEcCCCcchhHHH
Confidence            34455567789999999999844 444444443345899999999999998873         22233322211111   


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCC-cEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGT  284 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~Lkpg-G~li~~  284 (362)
                          ...+.+|+|+-     ..... ..+.....++++| |++++.
T Consensus        90 ~~~~~~~~G~d~vid-----~~G~~-~~~~~a~~~~~~g~~~~~~~  129 (175)
T d1cdoa2          90 VLSKMTNGGVDFSLE-----CVGNV-GVMRNALESCLKGWGVSVLV  129 (175)
T ss_dssp             HHHHHHTSCBSEEEE-----CSCCH-HHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHhhccCCcceeee-----ecCCH-HHHHHHHHHhhCCCcceeEE
Confidence                12346888864     33333 3466667776666 444433

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.18  Score=43.64  Aligned_cols=72  Identities=15%  Similarity=0.124  Sum_probs=53.4

Q ss_pred             CCeEEEEcCccchHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCCCcceEEE
Q 018003          178 GGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FASSSIDAVH  253 (362)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~~~fD~V~  253 (362)
                      ..+|+|+=||.|.+...+...|...+ +.++|+++.+++..+.+        .++..++.+|+.++.   ++...+|+++
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n--------~~~~~~~~~di~~~~~~~~~~~~~Dll~   73 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN--------FPHTQLLAKTIEGITLEEFDRLSFDMIL   73 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH--------CTTSCEECSCGGGCCHHHHHHHCCSEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH--------CCCCCcccCchhhCCHhHcCCCCccEEE
Confidence            35899999999999998888875433 67999999888877765        345567778887654   2233689998


Q ss_pred             eccc
Q 018003          254 AGAA  257 (362)
Q Consensus       254 ~~~v  257 (362)
                      ...-
T Consensus        74 ggpP   77 (343)
T d1g55a_          74 MSPP   77 (343)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            7644

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.77  E-value=0.044  Score=43.02  Aligned_cols=93  Identities=18%  Similarity=0.124  Sum_probs=61.2

Q ss_pred             hcCCCCCCeEEEEcC-cc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---CCC
Q 018003          172 YLKPVLGGNIIDASC-GS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---FAS  246 (362)
Q Consensus       172 ~l~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---~~~  246 (362)
                      ....+++.+||=.|. |. |.....+++.. +.+|++++-+++.++.+++.        .... .+  |..+..   -..
T Consensus        22 ~~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~l--------Ga~~-~i--~~~~~~~~~~~~   89 (171)
T d1iz0a2          22 RAQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL--------GAEE-AA--TYAEVPERAKAW   89 (171)
T ss_dssp             HTTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT--------TCSE-EE--EGGGHHHHHHHT
T ss_pred             HhCCCCCCEEEEEeccccchhhhhhhhccc-cccccccccccccccccccc--------ccce-ee--ehhhhhhhhhcc
Confidence            356678999999885 43 77777777763 35999999999888887763        1111 11  222211   123


Q ss_pred             CcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          247 SSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       247 ~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      ..+|+|+-.-     .+   .+....+.|+|+|+++..
T Consensus        90 ~g~D~v~d~~-----G~---~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          90 GGLDLVLEVR-----GK---EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             TSEEEEEECS-----CT---THHHHHTTEEEEEEEEEC
T ss_pred             cccccccccc-----ch---hHHHHHHHHhcCCcEEEE
Confidence            4699988532     21   257788999999999875

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.72  E-value=2.5  Score=36.23  Aligned_cols=118  Identities=13%  Similarity=0.155  Sum_probs=71.2

Q ss_pred             HHhhcCCCCCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC------------------CCCCC
Q 018003          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------NFPKE  230 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~------------------~~~~~  230 (362)
                      +.+++...+...|+-+|||.-.....+....++..++=+|.-+ .++.=++.+.+..                  .....
T Consensus        88 v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~  166 (328)
T d1rjda_          88 ILEFLVANEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG  166 (328)
T ss_dssp             HHHHHHHCSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred             HHHHHHHCCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhchhhhhhccccccccccccccCCCC
Confidence            3444444445689999999987777776666644555566533 3332222222100                  01135


Q ss_pred             CEEEEEecCCCCC---------CCCCcceEEEecccccCCCCH--HHHHHHHHhhccCCcEEEEEEEcc
Q 018003          231 NFLLVRADISRLP---------FASSSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       231 ~~~~~~~d~~~~p---------~~~~~fD~V~~~~vl~h~~d~--~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                      +..++.+|+.++.         +.....=++++-.|+.+++..  .++++.+.+... +|.+++.++..
T Consensus       167 ~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~-~~~~i~YE~i~  234 (328)
T d1rjda_         167 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFS-HGLWISYDPIG  234 (328)
T ss_dssp             SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCS-SEEEEEEEECC
T ss_pred             CeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCC-CceEEEeccCC
Confidence            7888999987643         122233478888888988543  367777777764 56677777763

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.35  E-value=0.57  Score=36.58  Aligned_cols=104  Identities=12%  Similarity=0.020  Sum_probs=65.2

Q ss_pred             HHhhcCCCCCCeEEEEcCc--cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC-CC-CCC
Q 018003          169 MKGYLKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI-SR-LPF  244 (362)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~-~~-~p~  244 (362)
                      +.+.-...++.+||=-|++  .|.++..+++.. +.+|+++.-+++-.+.+++.-       ...+.-...+. +. ...
T Consensus        23 L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lG-------a~~vi~~~~~~~~~~~~~   94 (176)
T d1xa0a2          23 LEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLG-------AKEVLAREDVMAERIRPL   94 (176)
T ss_dssp             HHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTT-------CSEEEECC---------C
T ss_pred             HHHhCCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcc-------cceeeecchhHHHHHHHh
Confidence            3334445568889988854  577888888763 469999999888888888731       11111111111 11 122


Q ss_pred             CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          245 ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      ..+.+|+|+-.-.     .  ..+.+..+.|+|||+++.....
T Consensus        95 ~~~gvD~vid~vg-----g--~~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2          95 DKQRWAAAVDPVG-----G--RTLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CSCCEEEEEECST-----T--TTHHHHHHTEEEEEEEEECSCC
T ss_pred             hccCcCEEEEcCC-----c--hhHHHHHHHhCCCceEEEeecc
Confidence            3567998874322     1  2488899999999999987654

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.031  Score=36.36  Aligned_cols=29  Identities=24%  Similarity=0.509  Sum_probs=22.6

Q ss_pred             eeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      -+.||.|+.+|...+           +.++|..|+..|..
T Consensus         2 ~~~CP~C~~eL~~~~-----------~~~~C~~C~~~~~~   30 (71)
T d2jnea1           2 ELHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   30 (71)
T ss_dssp             CCBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             CCcCCCccCcccccC-----------CCEehhhhhhhhee
Confidence            468999999988754           57888888877655

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.69  E-value=0.11  Score=40.96  Aligned_cols=105  Identities=19%  Similarity=0.154  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCcc-chHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCC---CEEEEEecCCCCC--C------
Q 018003          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKE---NFLLVRADISRLP--F------  244 (362)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~---~~~~~~~d~~~~p--~------  244 (362)
                      ++.+||=||+|. |..+...+.. .++.|+.+|.++..+++.++...+.......   ..+-..+....+.  +      
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~-lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKR-LGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHH-cCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            467999999998 5555555544 3569999999999988888753222000000   0000000111110  0      


Q ss_pred             ----CCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEE
Q 018003          245 ----ASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  282 (362)
Q Consensus       245 ----~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li  282 (362)
                          .-...|+|+..-.+.--+.|.-+-+++.+.+|||.+++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                01247999987776666677777889999999999877

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.057  Score=30.10  Aligned_cols=24  Identities=38%  Similarity=0.837  Sum_probs=18.5

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      .||.|+.+-...              -+|..||+.|..
T Consensus         4 ~CP~C~~~~a~G--------------DqCe~CG~~~~p   27 (35)
T d1pfva3           4 TCPKCKSPDQYG--------------DNCEVCGATYSP   27 (35)
T ss_dssp             ECTTTCCSSEET--------------TBCTTTCCBCCG
T ss_pred             ECCCCCCccccc--------------ccHHHcCCcCCH
Confidence            599999875443              379999998865

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=1.3  Score=36.48  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +++.+|=.|++.|.   .+..|++.|.  +|+.++.+++.++.+.+.++..  +...++..+.+|+.+..          
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~--~~~~~~~~~~~Dls~~~~v~~~v~~~~   84 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSA--GYPGTLIPYRCDLSNEEDILSMFSAIR   84 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT--TCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc--CCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            36789999998874   4566666776  9999999999988888877765  12346888899997632          


Q ss_pred             CCCCcceEEEecccccC
Q 018003          244 FASSSIDAVHAGAAIHC  260 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h  260 (362)
                      -.-+..|+++.+....+
T Consensus        85 ~~~g~iD~lVnnAg~~~  101 (257)
T d1xg5a_          85 SQHSGVDICINNAGLAR  101 (257)
T ss_dssp             HHHCCCSEEEECCCCCC
T ss_pred             HhcCCCCEEEecccccC
Confidence            11357999998866544

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.87  E-value=0.056  Score=33.07  Aligned_cols=29  Identities=17%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             eeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        72 l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      ..||.|++.-...+        ...+.+.|.+||.+.
T Consensus         6 ~~Cp~Cgs~~iv~D--------~~~Ge~vC~~CG~Vi   34 (50)
T d1pfta_           6 KVCPACESAELIYD--------PERGEIVCAKCGYVI   34 (50)
T ss_dssp             CSCTTTSCCCEEEE--------TTTTEEEESSSCCBC
T ss_pred             ccCcCCCCCcEEEE--------CCCCeEecccCCcEe
Confidence            46999998543222        234789999999864

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=90.65  E-value=0.07  Score=29.74  Aligned_cols=24  Identities=25%  Similarity=0.594  Sum_probs=18.3

Q ss_pred             eCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        73 ~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      .||.|+++-..              .-+|..||+.|..
T Consensus         4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p   27 (35)
T d1rqga3           4 TCPYCGAEDQK--------------GDQCEVCGRPLTP   27 (35)
T ss_dssp             BCSSSCCSCCC--------------TTTCSSSCCCCCT
T ss_pred             ECCCCCCCccc--------------CcchhhcCCccCH
Confidence            59999976543              3479999988766

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=90.28  E-value=0.048  Score=34.33  Aligned_cols=40  Identities=18%  Similarity=0.503  Sum_probs=23.7

Q ss_pred             eeeCCCCCCCcc-cccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ...||.|+..-. .........++.+--.+.|.+|++.+..
T Consensus        15 ~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wre   55 (57)
T d1qypa_          15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             cCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCccee
Confidence            467999998321 1111122234444457899999987653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.95  E-value=0.94  Score=37.44  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             CCCCeEEEEcCccc---hHHHHHHHhCCCCEEEEE-eCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC--------
Q 018003          176 VLGGNIIDASCGSG---LFSRIFAKSGLFSLVVAL-DYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP--------  243 (362)
Q Consensus       176 ~~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p--------  243 (362)
                      -.|+++|=.|++.|   ..+..|++.|.  +|+.. +-+++.++...+.+...    ..++..+.+|+.+..        
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~   77 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKL----GAQGVAIQADISKPSEVVALFDK   77 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHc----CCCceEecCCCCCHHHHHHHHHH
Confidence            45789998887766   45666777776  78764 56777778888877776    568899999997631        


Q ss_pred             --CCCCcceEEEecccccCCCCH-------------------HHHHHHHHhhccCCcEEEEEEE
Q 018003          244 --FASSSIDAVHAGAAIHCWSSP-------------------STGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       244 --~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~i~r~LkpgG~li~~~~  286 (362)
                        ..-+..|+++.+..+.+..+.                   ..+++.+.+.++.+|..++...
T Consensus        78 ~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s  141 (259)
T d1ja9a_          78 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  141 (259)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence              123579999988777655431                   2456777777888777666543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.33  E-value=1.6  Score=35.77  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=56.6

Q ss_pred             CCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------C
Q 018003          178 GGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------F  244 (362)
Q Consensus       178 ~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------~  244 (362)
                      ++.+|=.|++.|.   .+..|++.|.  +|+.+|.+++.++.+.+.++..    ..++..+.+|+.+..          -
T Consensus        10 nKvalITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~----g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1          10 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSF----GYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTT----TCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            6678888877663   3444445555  9999999999999888888765    467899999997632          1


Q ss_pred             CCCcceEEEecccccCC
Q 018003          245 ASSSIDAVHAGAAIHCW  261 (362)
Q Consensus       245 ~~~~fD~V~~~~vl~h~  261 (362)
                      .-+..|+++.+....+.
T Consensus        84 ~~g~iDilvnnag~~~~  100 (251)
T d2c07a1          84 EHKNVDILVNNAGITRD  100 (251)
T ss_dssp             HCSCCCEEEECCCCCCC
T ss_pred             hcCCceeeeeccccccc
Confidence            13679999987665443

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.00  E-value=0.08  Score=32.24  Aligned_cols=40  Identities=18%  Similarity=0.453  Sum_probs=24.2

Q ss_pred             CCeeeCCCCCCCcc-cccCCCCccccccCCceecCccCccc
Q 018003           69 KNVLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        69 ~~~l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      -.++.||.|++.-. .....-.+.++.+-..+.|.+||+.+
T Consensus         7 T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             cCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            46789999998421 11111222333444578999999865

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.54  E-value=2.6  Score=32.67  Aligned_cols=101  Identities=7%  Similarity=-0.065  Sum_probs=61.4

Q ss_pred             HHhhcCCCCC--CeEEEEc--CccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC-
Q 018003          169 MKGYLKPVLG--GNIIDAS--CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP-  243 (362)
Q Consensus       169 l~~~l~~~~~--~~vLDiG--cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p-  243 (362)
                      +.+....+++  .+||=.|  .|.|.++..+++......++++.-+++......+.+        ....++...-+.+. 
T Consensus        20 l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~--------gad~vi~~~~~~~~~   91 (187)
T d1vj1a2          20 VQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL--------GFDAAVNYKTGNVAE   91 (187)
T ss_dssp             HHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS--------CCSEEEETTSSCHHH
T ss_pred             HHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc--------cceEEeeccchhHHH
Confidence            3444444444  7799877  456999999998753346778887776555444332        11222222211111 


Q ss_pred             ----CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          244 ----FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       244 ----~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                          .....+|+|+-     .+.  ...+....+.|+|+|+++..
T Consensus        92 ~~~~~~~~GvDvv~D-----~vG--g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          92 QLREACPGGVDVYFD-----NVG--GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             HHHHHCTTCEEEEEE-----SSC--HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHhccCceEEEe-----cCC--chhHHHHhhhccccccEEEe
Confidence                12346999973     332  35688999999999999864

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=88.48  E-value=3.4  Score=33.82  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      .|+++|=-|++.|.   .+..|++.|.  +|+.+|.+++.++.+.+.+...    ..++.++.+|+.+..          
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSK----GFKVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeeCCCHHHHHHHHHHHH
Confidence            47789988988764   4566667776  9999999999998888887765    567888999997632          


Q ss_pred             CC-CCcceEEEecccccCC
Q 018003          244 FA-SSSIDAVHAGAAIHCW  261 (362)
Q Consensus       244 ~~-~~~fD~V~~~~vl~h~  261 (362)
                      -. .+..|+++.+..+.+.
T Consensus        81 ~~~~~~idilvnnAG~~~~   99 (259)
T d2ae2a_          81 NHFHGKLNILVNNAGIVIY   99 (259)
T ss_dssp             HHTTTCCCEEEECCCCCCC
T ss_pred             HHhCCCceEEEECCceecc
Confidence            01 2369999988665443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=88.36  E-value=1.4  Score=36.30  Aligned_cols=78  Identities=15%  Similarity=0.176  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +|+++|=.|++.|.   .+..+++.|.  +|+.++.+++.++.+.+.+...    ..++.++.+|+.+..          
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~----~~~~~~~~~D~s~~~~~~~~~~~~~   78 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREK----GLNVEGSVCDLLSRTERDKLMQTVA   78 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCCceEEEeecCCHHHHHHHHHHHH
Confidence            47899999998763   4566677776  9999999999988888888776    577888999997632          


Q ss_pred             -CCCCcceEEEecccccC
Q 018003          244 -FASSSIDAVHAGAAIHC  260 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h  260 (362)
                       ...+..|+++.+..+.+
T Consensus        79 ~~~~g~idilinnag~~~   96 (258)
T d1ae1a_          79 HVFDGKLNILVNNAGVVI   96 (258)
T ss_dssp             HHTTSCCCEEEECCCCCC
T ss_pred             HHhCCCcEEEeccccccc
Confidence             11356889987766544

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.16  E-value=2.3  Score=35.18  Aligned_cols=103  Identities=13%  Similarity=0.171  Sum_probs=71.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCC-HHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYS-ENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---------  243 (362)
                      .|+++|=-|++.|.   .+..|++.|.  +|+.+|.+ ++.++...+.+...    ..++.++.+|+.+..         
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~----g~~~~~~~~D~~~~~~v~~~~~~~   90 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKN----GSDAACVKANVGVVEDIVRMFEEA   90 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhh----CCceeeEeCCCCCHHHHHHHHHHH
Confidence            37789999988773   5667777776  99999887 55666666666665    568899999997631         


Q ss_pred             -CCCCcceEEEecccccCCCC-------------------HHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       -..+..|+++.+........                   +..+.+.+.+.|+.+|..++..
T Consensus        91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence             11357899998766544322                   1244777778888888777654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=87.62  E-value=1.2  Score=32.56  Aligned_cols=85  Identities=15%  Similarity=0.184  Sum_probs=54.2

Q ss_pred             eEEEEcCcc-chH-HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceEEE
Q 018003          180 NIIDASCGS-GLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVH  253 (362)
Q Consensus       180 ~vLDiGcG~-G~~-~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~V~  253 (362)
                      +|+=+|+|. |.. +..|.+.|.  +|+.+|.+++.++.+++.         .+..++.+|..+..    ..-...|.++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~--~v~vid~d~~~~~~~~~~---------~~~~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH--DIVLIDIDKDICKKASAE---------IDALVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH---------CSSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--CcceecCChhhhhhhhhh---------hhhhhccCcccchhhhhhcChhhhhhhc
Confidence            677788764 332 334444565  999999999988887664         25678899987642    1224578888


Q ss_pred             ecccccCCCCHH--HHHHHHHhhccCCcE
Q 018003          254 AGAAIHCWSSPS--TGVAEISRVLRPGGV  280 (362)
Q Consensus       254 ~~~vl~h~~d~~--~~l~~i~r~LkpgG~  280 (362)
                      +..     ++..  ..+..+.+.+.+.-.
T Consensus        71 ~~t-----~~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          71 AVT-----GKEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             ECC-----SCHHHHHHHHHHHHHTTCCCE
T ss_pred             ccC-----CcHHHHHHHHHHHHHcCCceE
Confidence            742     3333  344555667777743

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.48  E-value=1.5  Score=35.97  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=61.6

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      .|+.+|=-|++.|-   ++..+++.|.  +|+.+|.+++.++...+.+...    ..++..+.+|+.+..          
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~----~~~~~~~~~Dvs~~~~v~~~~~~i~   79 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGL----GAKVHTFVVDCSNREDIYSSAKKVK   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence            47788888988874   5667777776  9999999999998888887765    568999999998742          


Q ss_pred             CCCCcceEEEecccccCC
Q 018003          244 FASSSIDAVHAGAAIHCW  261 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~  261 (362)
                      -..+..|+++.+..+.+.
T Consensus        80 ~~~g~idilinnag~~~~   97 (244)
T d1yb1a_          80 AEIGDVSILVNNAGVVYT   97 (244)
T ss_dssp             HHTCCCSEEEECCCCCCC
T ss_pred             HHcCCCceeEeecccccc
Confidence            124679999988776554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.32  E-value=2.1  Score=35.48  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=71.1

Q ss_pred             CCeEE-EEcCccch---HHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC---------
Q 018003          178 GGNII-DASCGSGL---FSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP---------  243 (362)
Q Consensus       178 ~~~vL-DiGcG~G~---~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p---------  243 (362)
                      |++|. ==|++.|.   .+..|++. +.  .|+.++.+++.++.+.+.++..    ..++.++.+|+.+..         
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dvs~~~sv~~~~~~~   75 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAE----GLSPRFHQLDIDDLQSIRALRDFL   75 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHT----TCCCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEEecCCHHHHHHHHHHH
Confidence            56774 44655543   23455555 44  9999999999999998888776    567899999998743         


Q ss_pred             -CCCCcceEEEecccccCCC---C----------------HHHHHHHHHhhccCCcEEEEEE
Q 018003          244 -FASSSIDAVHAGAAIHCWS---S----------------PSTGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       244 -~~~~~fD~V~~~~vl~h~~---d----------------~~~~l~~i~r~LkpgG~li~~~  285 (362)
                       -.-+..|+++.+..+.+..   +                +..+.+.+.+.|+++|+++...
T Consensus        76 ~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis  137 (275)
T d1wmaa1          76 RKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  137 (275)
T ss_dssp             HHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence             1125799999987764321   1                1145777788889999977654

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=86.93  E-value=1.4  Score=37.14  Aligned_cols=90  Identities=22%  Similarity=0.375  Sum_probs=61.9

Q ss_pred             CeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEeccc
Q 018003          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAGAA  257 (362)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~~v  257 (362)
                      .+|||+=||.|.+...+.+.|. ..+.++|+++.+.+..+.+        .+ -.++.+|+.++... -...|+++...-
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~-~~~~a~e~d~~a~~~~~~N--------~~-~~~~~~Di~~~~~~~~~~~dll~~g~P   70 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESN--------HS-AKLIKGDISKISSDEFPKCDGIIGGPP   70 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC-EEEEEEECCHHHHHHHHHH--------CC-SEEEESCTTTSCGGGSCCCSEEEECCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC-EEEEEEeCCHHHHHHHHHH--------CC-CCCccCChhhCCHhHcccccEEeeccc
Confidence            3799999999999999988885 3466999999888877765        22 34678999887532 246899997643


Q ss_pred             ccCC---------CCHH-HH---HHHHHhhccCC
Q 018003          258 IHCW---------SSPS-TG---VAEISRVLRPG  278 (362)
Q Consensus       258 l~h~---------~d~~-~~---l~~i~r~Lkpg  278 (362)
                      -..+         .|+. .+   +-++.+.++|.
T Consensus        71 Cq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk  104 (324)
T d1dcta_          71 CQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI  104 (324)
T ss_dssp             CTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCS
T ss_pred             ccccccccccccccccccchHHHHHHHHHhhCCc
Confidence            3222         3443 22   33355677885

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.92  E-value=2.8  Score=34.51  Aligned_cols=76  Identities=13%  Similarity=0.232  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +++.+|=.|++.|.   .+..|++.|.  +|+.+|.+++.++.+.+.+...     ..+.++.+|+.+..          
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~   77 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP-----DVISFVHCDVTKDEDVRNLVDTTI   77 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT-----TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCC-----CceEEEEccCCCHHHHHHHHHHHH
Confidence            47789999988764   3455666675  9999999999888887776543     56888899997632          


Q ss_pred             CCCCcceEEEeccccc
Q 018003          244 FASSSIDAVHAGAAIH  259 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~  259 (362)
                      -.-+..|+++.+..+.
T Consensus        78 ~~~g~iD~lVnnAG~~   93 (268)
T d2bgka1          78 AKHGKLDIMFGNVGVL   93 (268)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHcCCcceeccccccc
Confidence            1125789999876543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.90  E-value=0.73  Score=40.92  Aligned_cols=51  Identities=12%  Similarity=0.073  Sum_probs=41.2

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHhhc
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQE  224 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~gvD~s~~~~~~a~~~~~~~  224 (362)
                      ...++..++|+|+-.|.++..++..  +...+|+++|+++...+..+++++..
T Consensus       209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n  261 (395)
T d2py6a1         209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY  261 (395)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred             CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhc
Confidence            3456789999999999988776654  33458999999999999999887654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=1.6  Score=35.87  Aligned_cols=85  Identities=15%  Similarity=0.246  Sum_probs=61.1

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      .|+.+|=-|++.|.   .+..+++.|.  +|+.+|.+++.++.+.+.+...  ....++.++.+|+.+..          
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~--~~~~~~~~~~~Dv~~~~~v~~~~~~~~   77 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQ--FEPQKTLFIQCDVADQQQLRDTFRKVV   77 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT--SCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHh--cCCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            36788888987764   3555666675  9999999999888887776543  12357889999997642          


Q ss_pred             CCCCcceEEEecccccCCCCHH
Q 018003          244 FASSSIDAVHAGAAIHCWSSPS  265 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~~  265 (362)
                      -.-+..|+++.+..+....+..
T Consensus        78 ~~~G~iDilVnnAg~~~~~~~~   99 (254)
T d2gdza1          78 DHFGRLDILVNNAGVNNEKNWE   99 (254)
T ss_dssp             HHHSCCCEEEECCCCCCSSSHH
T ss_pred             HHcCCcCeecccccccccccch
Confidence            1125799999988877666544

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.21  E-value=3.5  Score=33.61  Aligned_cols=105  Identities=16%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +++++|=-|++.|.   .+..|++.|.  +|+.+|.+++.++...+.+...   ...++..+.+|+.+..          
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~   78 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEK---YGVETMAFRCDVSNYEEVKKLLEAVK   78 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHH---HCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            46789999988763   4566677776  9999999998877766655332   1357888999997632          


Q ss_pred             CCCCcceEEEecccccCCCC-------------------HHHHHHHHHhhccC--CcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSS-------------------PSTGVAEISRVLRP--GGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d-------------------~~~~l~~i~r~Lkp--gG~li~~~~  286 (362)
                      -.-+..|+++.+..+.+..+                   +..+.+.+.+.|+.  +|.++....
T Consensus        79 ~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S  142 (251)
T d1vl8a_          79 EKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGS  142 (251)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECC
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhccccccccccccccc
Confidence            11257999998876544321                   11446666677743  567666543

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.14  E-value=0.46  Score=31.15  Aligned_cols=40  Identities=13%  Similarity=0.365  Sum_probs=24.9

Q ss_pred             eeeCCCCCCCcc-cccCCCCccccccCCceecCccCccccc
Q 018003           71 VLACPICYKPLT-WIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        71 ~l~CP~C~~~l~-~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ...||.|+..-. .........+..+.-.+.|.+|++.+..
T Consensus        23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~   63 (72)
T d1twfi2          23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTS   63 (72)
T ss_dssp             CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCccc
Confidence            357999998321 1111222344445567899999998776

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=85.97  E-value=0.16  Score=33.26  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=22.3

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....||.|+..-...         ..-+++.|..|+..+..
T Consensus        26 ~ky~Cp~Cgk~~vkR---------~a~GIW~C~kC~~~~AG   57 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKR---------AGTGIWMCGHCGYKIAG   57 (73)
T ss_dssp             SCBCCSSSCCSCEEE---------EETTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCCceEE---------EEEEEEECCCCCCEEeC
Confidence            457899999642111         12479999999987765

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=85.58  E-value=4.1  Score=32.98  Aligned_cols=100  Identities=14%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +|+++|=-|++.|.   .+..+++.|.  +|+.+|.+++.++...+.+.       .+...+.+|+.+..          
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~~~   73 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLG-------ANGKGLMLNVTDPASIESVLEKIR   73 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHG-------GGEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhC-------CCCcEEEEEecCHHHhhhhhhhhh
Confidence            36778888877663   4566667776  99999999988887776653       35678889987632          


Q ss_pred             CCCCcceEEEecccccCCCCH-------------------HHHHHHHHhhc--cCCcEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSSP-------------------STGVAEISRVL--RPGGVFVGTT  285 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d~-------------------~~~l~~i~r~L--kpgG~li~~~  285 (362)
                      -.-+..|+++.+....+....                   ..+.+.+.+.+  +.+|.++...
T Consensus        74 ~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~is  136 (243)
T d1q7ba_          74 AEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIG  136 (243)
T ss_dssp             HHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred             cccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeec
Confidence            113579999987665444321                   13455566665  3468877654

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=85.15  E-value=2.1  Score=35.16  Aligned_cols=109  Identities=17%  Similarity=0.055  Sum_probs=68.9

Q ss_pred             CCCCCCeEEEEcCccchHHHHHHHhC----------------------------------------CCCEEEEEeCCHHH
Q 018003          174 KPVLGGNIIDASCGSGLFSRIFAKSG----------------------------------------LFSLVVALDYSENM  213 (362)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~----------------------------------------~~~~v~gvD~s~~~  213 (362)
                      .-..+..++|--||+|.++...+-..                                        ....++|.|+++.+
T Consensus        47 ~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~a  126 (249)
T d1o9ga_          47 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA  126 (249)
T ss_dssp             SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHH
Confidence            33445679999999999987665420                                        01246789999999


Q ss_pred             HHHHH---HHHhhcCCCCCCCEEEEEecCCCCC-C----CCCcceEEEecccc-cCCC----CH----HHHHHHHHhhcc
Q 018003          214 LKQCY---EFVQQESNFPKENFLLVRADISRLP-F----ASSSIDAVHAGAAI-HCWS----SP----STGVAEISRVLR  276 (362)
Q Consensus       214 ~~~a~---~~~~~~~~~~~~~~~~~~~d~~~~p-~----~~~~fD~V~~~~vl-~h~~----d~----~~~l~~i~r~Lk  276 (362)
                      ++.|+   ++++..  +....+.+.+.|+.+.. .    +....++|+++--- |-+.    .+    ..+...+.++|.
T Consensus       127 i~~A~~~r~n~~~A--gl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p  204 (249)
T d1o9ga_         127 AQAARRLRERLTAE--GGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALP  204 (249)
T ss_dssp             HHHHHHHHHHHHHT--TSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHc--CCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCC
Confidence            88884   455544  34577899999986542 1    23457899988432 2221    12    355556777775


Q ss_pred             CCcEEEEE
Q 018003          277 PGGVFVGT  284 (362)
Q Consensus       277 pgG~li~~  284 (362)
                      ....++++
T Consensus       205 ~~s~~~it  212 (249)
T d1o9ga_         205 AHAVIAVT  212 (249)
T ss_dssp             TTCEEEEE
T ss_pred             CCcEEEEe
Confidence            55555554

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=84.84  E-value=0.2  Score=32.88  Aligned_cols=32  Identities=25%  Similarity=0.485  Sum_probs=22.6

Q ss_pred             CeeeCCCCCCCcccccCCCCccccccCCceecCccCccccc
Q 018003           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (362)
Q Consensus        70 ~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~~~  110 (362)
                      ....||.|+..-...         ..-+++.|..|+..+..
T Consensus        26 ~ky~Cp~Cgk~~vkR---------~a~GIW~C~kC~~~~AG   57 (73)
T d1vqoz1          26 EDHACPNCGEDRVDR---------QGTGIWQCSYCDYKFTG   57 (73)
T ss_dssp             SCBCCSSSSCSCEEE---------EETTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCceeEE---------EEEEEEECCCCCCEEeC
Confidence            447899999752211         22479999999987765

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.80  E-value=2.5  Score=34.35  Aligned_cols=75  Identities=17%  Similarity=0.167  Sum_probs=54.9

Q ss_pred             CCCeEEEEcCccc---hHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC------CCCC
Q 018003          177 LGGNIIDASCGSG---LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP------FASS  247 (362)
Q Consensus       177 ~~~~vLDiGcG~G---~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p------~~~~  247 (362)
                      .|+++|=.|++.|   ..+..+++.|.  +|+.+|.+++.++...+.        ..++..++.|+.+..      -.-+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~g   75 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRE--------CPGIEPVCVDLGDWEATERALGSVG   75 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--------STTCEEEECCTTCHHHHHHHHTTCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHh--------cCCCeEEEEeCCCHHHHHHHHHHhC
Confidence            4789999998877   34566677776  999999999887766554        356778889986632      1236


Q ss_pred             cceEEEecccccCC
Q 018003          248 SIDAVHAGAAIHCW  261 (362)
Q Consensus       248 ~fD~V~~~~vl~h~  261 (362)
                      +.|+++.+..+.+.
T Consensus        76 ~iDilVnnAg~~~~   89 (244)
T d1pr9a_          76 PVDLLVNNAAVALL   89 (244)
T ss_dssp             CCCEEEECCCCCCC
T ss_pred             CceEEEeccccccc
Confidence            79999988766543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.74  E-value=2  Score=31.00  Aligned_cols=86  Identities=19%  Similarity=0.068  Sum_probs=58.0

Q ss_pred             CccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----CCCCcceEEEecccccCC
Q 018003          186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----FASSSIDAVHAGAAIHCW  261 (362)
Q Consensus       186 cG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----~~~~~fD~V~~~~vl~h~  261 (362)
                      ||.|..+..+++......++.+|.++...+..++          .++.++.+|..+..    ..-...+.+++..     
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~----------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----   70 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR----------SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----   70 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH----------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh----------cCccccccccCCHHHHHHhhhhcCcEEEEec-----
Confidence            4567788888887555578999999998877764          46789999987632    1224567777533     


Q ss_pred             CCHH--HHHHHHHhhccCCcEEEEEEE
Q 018003          262 SSPS--TGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       262 ~d~~--~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +|..  ..+....|.+.|...++....
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~iia~~~   97 (129)
T d2fy8a1          71 ESDSETIHCILGIRKIDESVRIIAEAE   97 (129)
T ss_dssp             SSHHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred             cchhhhHHHHHHHHHHCCCceEEEEEc
Confidence            2333  345556677888887776654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=84.61  E-value=0.58  Score=38.86  Aligned_cols=54  Identities=17%  Similarity=0.115  Sum_probs=35.9

Q ss_pred             EEEEecCCCC--CCCCCcceEEEecccc-----------cCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          233 LLVRADISRL--PFASSSIDAVHAGAAI-----------HCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       233 ~~~~~d~~~~--p~~~~~fD~V~~~~vl-----------~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      .++.+|..+.  .++++++|+|+..--.           +++......+.++.|+|||||.+++...
T Consensus         6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            4666775442  3567889988875321           1111235678999999999999998653

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.30  E-value=0.14  Score=32.56  Aligned_cols=40  Identities=18%  Similarity=0.539  Sum_probs=24.1

Q ss_pred             ccCCeeeCCCCCCCcccccCCCCccccccCCceecCccCccc
Q 018003           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (362)
Q Consensus        67 ~~~~~l~CP~C~~~l~~~~~~~~~~~~~~~~~l~C~~C~~~~  108 (362)
                      .....+.||.|+..+..-....  .-....+.++|..|+..-
T Consensus        10 ~~~~~y~Cp~C~~~ys~Lda~~--L~d~~~~~F~C~~C~~el   49 (62)
T d1vd4a_          10 TNRASFKCPVCSSTFTDLEANQ--LFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CSSSEEECSSSCCEEEHHHHHH--HEETTTTEEBCSSSCCBC
T ss_pred             ccCCceECCCCCCCcchhhHHH--hcCcCCCeEEecCCCCEE
Confidence            3457799999998542111000  011234789999999764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=83.69  E-value=3  Score=30.10  Aligned_cols=90  Identities=11%  Similarity=0.008  Sum_probs=52.5

Q ss_pred             eEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCC----CCCcceEEE
Q 018003          180 NIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPF----ASSSIDAVH  253 (362)
Q Consensus       180 ~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~----~~~~fD~V~  253 (362)
                      +++=+|+|. |. +...|.+.|.  +|+.+|.+++.++.+++          .....+.+|..+...    .-...|.|+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~--~vvvid~d~~~~~~~~~----------~~~~~~~gd~~~~~~l~~a~i~~a~~vi   69 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH--EVLAVDINEEKVNAYAS----------YATHAVIANATEENELLSLGIRNFEYVI   69 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC--CCEEEESCHHHHHHTTT----------TCSEEEECCTTCTTHHHHHTGGGCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC--eEEEecCcHHHHHHHHH----------hCCcceeeecccchhhhccCCccccEEE
Confidence            455567764 33 3344445565  89999999998888764          234567788876531    123467666


Q ss_pred             ecccccCCCCH-HHHHHHHHhhccCCcEEEEEE
Q 018003          254 AGAAIHCWSSP-STGVAEISRVLRPGGVFVGTT  285 (362)
Q Consensus       254 ~~~vl~h~~d~-~~~l~~i~r~LkpgG~li~~~  285 (362)
                      +...    .+. ...+-.+.+.+.|...++...
T Consensus        70 ~~~~----~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          70 VAIG----ANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             ECCC----SCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EEcC----chHHhHHHHHHHHHHcCCCcEEeec
Confidence            5332    222 233444455555666666543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=83.19  E-value=2.5  Score=32.22  Aligned_cols=97  Identities=11%  Similarity=0.082  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecC--CC-CCCCCCcc
Q 018003          175 PVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADI--SR-LPFASSSI  249 (362)
Q Consensus       175 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~--~~-~p~~~~~f  249 (362)
                      ..++.+||=-|+  |.|.++..+++.. +++|+++.-+++-.+.+++.        .....+...|.  .. .....+.+
T Consensus        21 ~~~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~l--------Gad~vi~~~~~~~~~~~~~~~~gv   91 (167)
T d1tt7a2          21 SPEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQL--------GASEVISREDVYDGTLKALSKQQW   91 (167)
T ss_dssp             CGGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHH--------TCSEEEEHHHHCSSCCCSSCCCCE
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhh--------cccceEeccchhchhhhcccCCCc
Confidence            334667887664  4577888888763 35999999998888888774        11222222221  11 12234579


Q ss_pred             eEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEc
Q 018003          250 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  287 (362)
Q Consensus       250 D~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~  287 (362)
                      |+|+-     ++.  ...+.+..+.|+|+|+++..-..
T Consensus        92 d~vid-----~vg--g~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          92 QGAVD-----PVG--GKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             EEEEE-----SCC--THHHHHHHTTEEEEEEEEECCCS
T ss_pred             eEEEe-----cCc--HHHHHHHHHHhccCceEEEeecc
Confidence            98863     332  24688999999999999876443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.83  E-value=3.7  Score=33.51  Aligned_cols=101  Identities=18%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +++++|=-|++.|.   .+..|++.|.  +|+.+|.+++.++...+.+       ..+..++.+|+.+..          
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~~~~~~~~~~   75 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAEL-------GERSMFVRHDVSSEADWTLVMAAVQ   75 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHH-------CTTEEEECCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHh-------CCCeEEEEeecCCHHHHHHHHHHHH
Confidence            46788888877663   4566666776  9999999998887766654       346778888987632          


Q ss_pred             CCCCcceEEEecccccCCCC-----H--------------HHHHHHHHhhcc-CCcEEEEEEE
Q 018003          244 FASSSIDAVHAGAAIHCWSS-----P--------------STGVAEISRVLR-PGGVFVGTTY  286 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h~~d-----~--------------~~~l~~i~r~Lk-pgG~li~~~~  286 (362)
                      -.-+..|+++.+..+.+..+     .              ..+.+.+.+.|+ .+|.++....
T Consensus        76 ~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS  138 (253)
T d1hxha_          76 RRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMAS  138 (253)
T ss_dssp             HHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             HHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccc
Confidence            11257899998876543211     1              134566666665 4788776543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=82.37  E-value=4  Score=31.33  Aligned_cols=93  Identities=14%  Similarity=0.077  Sum_probs=59.5

Q ss_pred             CCCeEEEEcC--ccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCC--CCCCCCCcceEE
Q 018003          177 LGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADIS--RLPFASSSIDAV  252 (362)
Q Consensus       177 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~--~~p~~~~~fD~V  252 (362)
                      ++.+||=.|.  |.|..+..+++.. +.+|+++.-+++..+.+++.-         -..++.-+-.  .-.+....+|.|
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~~~~~~lG---------ad~vi~~~~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTHEYLKSLG---------ASRVLPRDEFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHT---------EEEEEEGGGSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHHHHHHhhc---------cccccccccHHHHHHHHhhcCCee
Confidence            3457776653  3577777887763 459999999998888887641         1122222211  112345567877


Q ss_pred             EecccccCCCCHHHHHHHHHhhccCCcEEEEEEE
Q 018003          253 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  286 (362)
Q Consensus       253 ~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~  286 (362)
                      +     +.+.  ...+.+..+.|+++|+++..-.
T Consensus       101 v-----D~Vg--g~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         101 I-----DTVG--DKVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             E-----ESSC--HHHHHHHHHTEEEEEEEEECCC
T ss_pred             E-----EEcc--hHHHHHHHHHhccccceEeecc
Confidence            5     3333  2468899999999999998643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=82.17  E-value=1.4  Score=36.36  Aligned_cols=78  Identities=22%  Similarity=0.227  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +|+++|=-|++.|.   .+..+++.|.  +|+.+|.+++.++.+.+.++..    ..++..+.+|+.+..          
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~----g~~~~~~~~Dvs~~~~~~~~~~~~~   83 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQL----GGQAFACRCDITSEQELSALADFAI   83 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            47788888877653   3455555665  9999999999998888888776    567889999997632          


Q ss_pred             CCCCcceEEEecccccC
Q 018003          244 FASSSIDAVHAGAAIHC  260 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl~h  260 (362)
                      -.-+..|+++.+..+.+
T Consensus        84 ~~~g~iDilvnnAG~~~  100 (255)
T d1fmca_          84 SKLGKVDILVNNAGGGG  100 (255)
T ss_dssp             HHHSSCCEEEECCCCCC
T ss_pred             HHcCCCCEeeeCCcCCC
Confidence            11257999998766543

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=81.49  E-value=1.2  Score=37.87  Aligned_cols=69  Identities=19%  Similarity=0.186  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCccchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCCCC-CCcceEEEec
Q 018003          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLPFA-SSSIDAVHAG  255 (362)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p~~-~~~fD~V~~~  255 (362)
                      .+.+|||+=||.|.+...|.+.|. ..+.++|+++.+++..+.+....          .++|+.++... -..+|+++..
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~~----------~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEK----------PEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCC----------CBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCCC----------CcCchhcCchhhcceeeeeecc
Confidence            467999999999999999998885 34668999999998888775322          24777665422 2468999876


Q ss_pred             c
Q 018003          256 A  256 (362)
Q Consensus       256 ~  256 (362)
                      .
T Consensus        79 p   79 (327)
T d2c7pa1          79 F   79 (327)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=81.20  E-value=3.3  Score=33.97  Aligned_cols=76  Identities=16%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCccch---HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEecCCCCC----------
Q 018003          177 LGGNIIDASCGSGL---FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRADISRLP----------  243 (362)
Q Consensus       177 ~~~~vLDiGcG~G~---~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~d~~~~p----------  243 (362)
                      +|+++|=-|.+.|.   .+..|++.|.  +|+.+|.+++.++.+.+.++..    ..++..+.+|+.+..          
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~----g~~~~~~~~Dv~~~~~v~~~~~~~~   77 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREK----GVEARSYVCDVTSEEAVIGTVDSVV   77 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTT----TSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHHHHHHHHH
Confidence            47788988987764   4566777776  9999999999999888888766    567889999997632          


Q ss_pred             CCCCcceEEEecccc
Q 018003          244 FASSSIDAVHAGAAI  258 (362)
Q Consensus       244 ~~~~~fD~V~~~~vl  258 (362)
                      -.-+..|+++.+...
T Consensus        78 ~~~g~iDilVnnaG~   92 (260)
T d1zema1          78 RDFGKIDFLFNNAGY   92 (260)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCCCeehhhhcc
Confidence            112579999977543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=81.18  E-value=6.1  Score=30.45  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             CeEEEEcCcc-ch-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcC-----CCCC---------CCEEEEEecCCCC
Q 018003          179 GNIIDASCGS-GL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NFPK---------ENFLLVRADISRL  242 (362)
Q Consensus       179 ~~vLDiGcG~-G~-~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-----~~~~---------~~~~~~~~d~~~~  242 (362)
                      .+|-=||+|+ |. ++..++..|.  +|+.+|++++.++.+.+++....     .+..         .++. ...+...+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~   81 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIR-PTLSYGDF   81 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEE-EESSSTTG
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceee-cccccccc
Confidence            4688899987 43 3445566666  99999999999888877654220     0000         0111 12222222


Q ss_pred             CCCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEEEEcc
Q 018003          243 PFASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  288 (362)
Q Consensus       243 p~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~~~~~  288 (362)
                          ...|+|+= .+.|-+.-...+++++.+.++|+-+|.-.+...
T Consensus        82 ----~~adlViE-av~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l  122 (186)
T d1wdka3          82 ----GNVDLVVE-AVVENPKVKQAVLAEVENHVREDAILASNTSTI  122 (186)
T ss_dssp             ----GGCSEEEE-CCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS
T ss_pred             ----cccceeee-eecchHHHHHHHHHHHHhhcCCCeeEEeccccc
Confidence                24577763 233433334588999999999988877655443

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=80.08  E-value=6.3  Score=30.25  Aligned_cols=105  Identities=11%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             HHHHhhcCCCCCCeEEEEcCc---cchHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHhhcCCCCCCCEEEEEe---cCC
Q 018003          167 ELMKGYLKPVLGGNIIDASCG---SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKENFLLVRA---DIS  240 (362)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG---~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~---d~~  240 (362)
                      ..+.+.....+|.+||=+.+|   .|..+..+++.. +.+++++--+.+..+...+.+++.     .--.++..   |..
T Consensus        18 ~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~l-----Gad~vi~~~~~~~~   91 (189)
T d1gu7a2          18 LMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKEL-----GATQVITEDQNNSR   91 (189)
T ss_dssp             HHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHH-----TCSEEEEHHHHHCG
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHHhhhhhc-----cccEEEeccccchh
Confidence            345555667778888887333   466676777652 358888743333333322222222     11122222   111


Q ss_pred             CCC--------CCCCcceEEEecccccCCCCHHHHHHHHHhhccCCcEEEEE
Q 018003          241 RLP--------FASSSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  284 (362)
Q Consensus       241 ~~p--------~~~~~fD~V~~~~vl~h~~d~~~~l~~i~r~LkpgG~li~~  284 (362)
                      +..        ...+.+|+|+-     ++.  ...+....+.|+|+|+++..
T Consensus        92 ~~~~~v~~~~~~~g~~vdvv~D-----~vg--~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          92 EFGPTIKEWIKQSGGEAKLALN-----CVG--GKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             GGHHHHHHHHHHHTCCEEEEEE-----SSC--HHHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHHHHHHhhccCCceEEEE-----CCC--cchhhhhhhhhcCCcEEEEE
Confidence            110        01345888873     333  23467888999999999865