Citrus Sinensis ID: 018005

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MFPKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSWC
Secondary Structure (PSIPRED)
cccccccccHHHHccccHHHHHHHHccccHHHHHHHccccccHHHHcccHHHHHHHHcccccccEEEEEEcccccccccccccccccEEEccccccccccccEEEEEccccEEEEccccccEEEEEEcccccEEEEccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccEEEccEEEEEcccccccEEEEccccEEEcccccccccEEcccccccEEEEEEEEEEccEEEEEEEEEEcccEEEEEEEEEcccccEEEEEEEcHHHHHHHHccccccccEEEEEEcccEEEEEEcccccEEEEEccccEEEEcccccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccHcccHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccEEEEEEcccccccEEEEcccccccccccccccccccccccEEEEcccEEEEEcccccEEEEEccccHHHcccccccccccccEEEEEEccccEEEEEEEccccccEEEEEEccccccEcccccccccccccccccccEEEEccEEEEEEccccEEEEEEcccccEEEcccccccccccccccccccccccEEEEccEEEEEEEEEccccEEEEEEEEEccccEEEEHHHccHHHHHHHHHHcccccccEEEEEcccEEEEEEccccEEEEEEcccccEEEccccccccccccccEEcc
Coil and Loop (DISEMBL)
mfpkrremdpaiwsRLPEDLLDHVlsflppkmLLKLRSTCKhfnsllfspsflsktkcsssaFSCFillshpqcydqyplydsthgtwrrlslpyslllpSAATLLssskgllcfslpssssflvcnlvtlssrtidfptypfdfelltlvstpsGYKIFMLFAKsfpnyafvydstdqswskfdidgfpsmilsqsshqegvfykgslyfttpepfsIVRFDlengiwetpndandhmtmmlphELTFFRLvndgeesnklYLIGGVGRNGISTTMKLWELgcggnwieverVPEMMCRKFMsvcyhnydhvycfwhqgmicvccytwpeiLYYNVARrtwhwlpscpslphkwscgfswc
Flexible Loop (DISEMBL)
mfpkrremdpaiWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLpscpslphkwscgfswc
Low Complexity Region (SEG)
MFPKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHfnsllfspsflsKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRlslpyslllpsaatllsssKGllcfslpssssflVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSWC
Disordered region (IsUnstruct)
***********IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSW*
Disordered Region (DISOPRED)
*************SRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSWC
Disordered Region (DISEMBL)
********DPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSWC
Disordered Region (DISPRO)
****RREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSWC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFPKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSWC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q9FHS6	403	F-box/kelch-repeat protei	yes	no	0.953	0.856	0.520	4e-87
Q9LFV5	448	F-box/kelch-repeat protei	no	no	0.878	0.709	0.299	3e-30
Q39090	442	Protein UNUSUAL FLORAL OR	no	no	0.897	0.735	0.25	4e-20
Q9FZK1	467	F-box only protein 6 OS=A	no	no	0.856	0.663	0.265	9e-18
Q9M310	411	F-box/kelch-repeat protei	no	no	0.864	0.761	0.226	2e-09
Q9SMZ3	457	F-box only protein 13 OS=	no	no	0.875	0.693	0.246	4e-09
Q9LT21	389	F-box protein At3g19880 O	no	no	0.461	0.429	0.252	4e-06
Q9FGY4	359	F-box protein At5g49610 O	no	no	0.665	0.671	0.241	9e-06
Q9LJ74	388	F-box protein At3g18910 O	no	no	0.577	0.538	0.273	8e-05
Q9LUP4	396	Putative F-box/kelch-repe	no	no	0.635	0.580	0.253	0.0002

>sp|Q9FHS6|FK119_ARATH F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1

 Score =  321 bits (823), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 188/361 (52%), Positives = 239/361 (66%), Gaps = 16/361 (4%)

Query: 7   EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
            +DP IWS LP  LL+H+LS LP K LL LRS  +H  SL+ SPSF+S     S +   F
Sbjct: 42  NLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSF 98

Query: 67  ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFL-- 124
           +LLSHPQ ++ +PL++    +W  L LP SL L  A++LLSSS GLLCFSL  SS     
Sbjct: 99  LLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLS 158

Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFML---FAKSFPNYAFVYDSTDQSW 181
           + N +T SSR+I  P YPF FELL+LV++P GYKIF L    + +      +YDS D+SW
Sbjct: 159 IFNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSW 218

Query: 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTM 241
            KF   G    +L +  +Q+GVFY GSLYF   EPF IV  DL +G W T   A      
Sbjct: 219 RKF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGVF 272

Query: 242 MLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCR 300
               E+TF RLV+D E+   LY++GG+G NGI  ++K+WE      +WIEVE +P+++CR
Sbjct: 273 PADDEITFARLVSDPEK-KILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCR 331

Query: 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFS 360
           KF SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF 
Sbjct: 332 KFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGFR 391

Query: 361 W 361
           W
Sbjct: 392 W 392

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFV5|FK111_ARATH F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/354 (29%), Positives = 167/354 (47%), Gaps = 36/354 (10%)

Query: 7   EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
           +M+  IW+ LPEDLL+ +L+ +PP M+ ++RS CK +N +L   SFL      SS   C 
Sbjct: 98  QMEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCL 157

Query: 67  ILL--SHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSF- 123
           +    + PQ   Q  ++     TW +  +P++ L P A  L+ SS GL+CFS     +F 
Sbjct: 158 LTFWKNSPQ-IPQCSVFSLPLKTWYK--IPFTFLPPWAFWLVGSSGGLVCFSGLDGLTFR 214

Query: 124 -LVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFA-------KSFPNYAFVYD 175
            LVCN +  S RT+    Y    +L+ +V      K F + A       KS P    VYD
Sbjct: 215 TLVCNPLMQSWRTLPSMHYNQQRQLIMVVDRSD--KSFKVIATSDIYGDKSLPTE--VYD 270

Query: 176 STDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA 235
           S    WS   I   P++ L  S      +    LY  T  P  ++ + L++G WE     
Sbjct: 271 SKTDKWSLHQI--MPAVNLCSSKM---AYCDSRLYLETLSPLGLMMYRLDSGQWE----- 320

Query: 236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG-CGGNWIEVERV 294
             H+    P  L    LV   ++  +L+L+G +G      +M++WEL     +W+E+ R+
Sbjct: 321 --HIPAKFPRSLLDGYLVAGTQK--RLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRM 376

Query: 295 PEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSC 348
           P    R  + +    ++   CF    +IC   +   + L YNV ++ W W+  C
Sbjct: 377 PPKYFRALLRLSAERFE---CFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGC 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis thaliana GN=UFO PE=1 SV=2

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 156/372 (41%), Gaps = 47/372 (12%)

Query: 8   MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK-TKCSSSAFSCF 66
           MD  IWS+LP  LLD V++FLPP    + R  CK F SLLFS +FL    +      +CF
Sbjct: 42  MDGRIWSKLPPPLLDRVIAFLPPPAFFRTRCVCKRFYSLLFSNTFLETYLQLLPLRHNCF 101

Query: 67  ILLSHPQCYD----------------QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSK 110
           +   H                     +  L+D     W RLS  Y   +PS      SS 
Sbjct: 102 LFFKHKTLKSYIYKRGGTNDDDSNKAEGFLFDPNEIRWYRLSFAY---IPSGFYPSGSSG 158

Query: 111 GLLCFSLPSSS--SFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP 168
           GL+ +    +   + L+CN +  S   +   + P  F  + L  TP+   + +       
Sbjct: 159 GLVSWVSEEAGLKTILLCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLIS 218

Query: 169 NYAFVYDSTDQSWSKFDIDGFPSMILSQSS--------HQEGVFYKGSLYFTTPEPFSIV 220
            YA V + + +S+   D  GF S+    SS          + V+ +G  Y     PFS++
Sbjct: 219 PYA-VKNLSSESF-HVDAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPFSVL 276

Query: 221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST--TMK 278
            +++    W         + +  P    F R  +  E   +L L+  V ++ ++   +++
Sbjct: 277 SYEVTGNRW---------IKIQAPMR-RFLRSPSLLESKGRLILVAAVEKSKLNVPKSLR 326

Query: 279 LWELGC-GGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNV 337
           LW L      W+E+ER+P+ +  +F            C  +Q  + +        L +++
Sbjct: 327 LWSLQQDNATWVEIERMPQPLYTQF--AAEEGGKGFECVGNQEFVMIVLRGTSLQLLFDI 384

Query: 338 ARRTWHWLPSCP 349
            R++W W+P CP
Sbjct: 385 VRKSWLWVPPCP 396

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Considered as a meristem identity factor required for normal growth of the young floral meristem. Acts together with LEAFY to positively regulate the B class floral homeotic genes APETALA3 and PISTILLATA. In this way, operates as a region-specific regulator for petal and stamen development. Alternatively, may play a role as a negative regulator of the C class floral homeotic genes. Interacts together with the SKP1-like protein ASK1 to form a ubiquitin E3 ligase complex and could indirectly promote the ubiquitination and degradation of specific proteins controlling the floral primordia development like repressors of B class floral homeotic genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZK1|FBX6_ARATH F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1

 Score = 91.3 bits (225), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 96/362 (26%), Positives = 156/362 (43%), Gaps = 52/362 (14%)

Query: 8   MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFI 67
           MD  IW   P+DL + V+S LP     + R+ C+ +N+L+ S SF             F 
Sbjct: 112 MDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFY 171

Query: 68  LLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLL--SSSKGLLCFSLPSSSSFLV 125
            ++H +  +   +YD +   W    +P    LP  + +L  +S+ GL+CF      +F V
Sbjct: 172 TITH-ENVNSGQVYDPSLKKWHHPIIPA---LPKKSIVLPMASAGGLVCFLDIGHRNFYV 227

Query: 126 CNLVTLSSRTIDFPTYPFDF-------ELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD 178
            N +T S R  + P   F           L   ST  GYK+  +  +    Y  VYDS  
Sbjct: 228 SNPLTKSFR--ELPARSFKVWSRVAVGMTLNGNSTSHGYKVLWVGCEG--EYE-VYDSLS 282

Query: 179 QSWSKFDIDGFPSMI---LSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWET---- 231
             W+K      PS I   +  +   + V    +LYF   +P  I+ +D+ +G W+     
Sbjct: 283 NVWTKRGT--IPSNIKLPVLLNFKSQPVAIHSTLYFMLTDPEGILSYDMVSGKWKQFIIP 340

Query: 232 -PNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWEL-GCGGNWI 289
            P D +DH             L   GE   +L L+G + +N  +T + +WEL      W 
Sbjct: 341 GPPDLSDHT------------LAACGE---RLMLVGLLTKNA-ATCVCIWELQKMTLLWK 384

Query: 290 EVERVPEMMCRKFMSVCYHNYDHVYCFWHQG---MICVCCYTWPEILYYNVARRTWHWLP 346
           EV+R+P + C +F    Y  +  + C  ++G   ++ +       ++ YN   R W  +P
Sbjct: 385 EVDRMPNIWCLEF----YGKHIRMNCLGNKGCLILLSLRSRQMNRLITYNAVTREWTKVP 440

Query: 347 SC 348
            C
Sbjct: 441 GC 442

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M310|FBK77_ARATH F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 84/371 (22%), Positives = 150/371 (40%), Gaps = 58/371 (15%)

Query: 14  SRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSA----FSCFILL 69
           S LP+DLL+ +LSFLP   + +  + CK +N ++ S  FL     +S +    +  F   
Sbjct: 41  SLLPDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQRPWYFMFTTT 100

Query: 70  SHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCF-SLPSSSSFLVCNL 128
             P  Y     YD     W    LP    + ++   ++SS GL+CF      +   V N 
Sbjct: 101 DDPSGY----AYDPIIRKWYSFDLP---CIETSNWFVASSCGLVCFMDNDCRNKIYVSNP 153

Query: 129 VTLSSRTIDFPT--YPFDFELLT---------LVSTPSGYKIFMLFAKSFPNYAF----- 172
           +T   RT+  P      D+  ++         +      Y + ++ +K  P   F     
Sbjct: 154 ITKQWRTLIEPPGHKSTDYTAMSTSVNRANQAVNRANRSYSVSIVKSKQVPGNFFQWDLS 213

Query: 173 --VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE 230
             +Y S   +W+    D    ++       E V     LYF     +S    D  +G+  
Sbjct: 214 IHLYSSETMTWTTLVND----VLSGWRGGNESVICNNVLYFMI---YSTGGSDHRHGLIA 266

Query: 231 T---PNDANDHMTMM-----LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK---L 279
           +      +     +M     +P  LT  RL+N  E   +L ++GG+G++     +K   +
Sbjct: 267 SNLSSIGSPSSGILMRSFIPMPCSLTCGRLMNLRE---RLVIVGGIGKHDRPEVIKGIGI 323

Query: 280 WELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC-FWHQGMICVCCYTWPEILYYNVA 338
           W L  G  W+E+ ++P+   + F       +D V+       ++ +  Y  P +L +++ 
Sbjct: 324 WVLK-GKEWVEMAKMPQRFFQGF-----GEFDEVFASSGTDDLVYIQSYGSPALLTFDMN 377

Query: 339 RRTWHWLPSCP 349
            + W W   CP
Sbjct: 378 LKYWRWSQKCP 388

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMZ3|FBX13_ARATH F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=2

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 159/381 (41%), Gaps = 64/381 (16%)

Query: 16  LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSS--SAFSCFILLSHPQ 73
           L +D+L+ VLS+LP     ++ S CK + S   S SF  K  CS   +    F ++ +  
Sbjct: 70  LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSF--KLACSQIPTRDPWFFMIDNDS 127

Query: 74  CYDQYPLYDSTHGTWRRLSLPYSLLLPSAATL-LSSSKGLLCFSLPSSSSFLVCNLVTLS 132
               + ++DST  +W+ L+    L       + ++SS GLLC+    S  FL+ N +T S
Sbjct: 128 NSSSF-VFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGS 186

Query: 133 SRTIDFPTYPFD-------FELLTLVSTPSGYKIFMLFAKSFPNYAF-VYDSTDQSWSKF 184
           SR  D P+   +         + T   TPS Y +  + +   PN +F +Y+S   SWSK 
Sbjct: 187 SR--DIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTI-SGEIPNLSFKIYESNADSWSK- 242

Query: 185 DIDGFPSMILSQSS-HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA-NDHMTMM 242
                 S+  + SS H +     G++YF + +   +V     N +  +P+   +  +T+ 
Sbjct: 243 -DQELESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVV---ASNNLQRSPSKQYSSVITVT 298

Query: 243 LPHELTFFRLVNDG------------EESNKL------YLIGGVGRNGI----------- 273
              E+ +F L + G             E  KL      Y I  V   G            
Sbjct: 299 DEAEIVYF-LSSYGTIVACDLTKRCFTELPKLLPPFLEYSIDLVECEGTMYVILLSEFFE 357

Query: 274 STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--PE 331
           S ++++W L     W++V  +P  +  +     Y     + C    G   + C+    PE
Sbjct: 358 SASLRIWRLDNNREWVQVGMLPPALSHEL----YGKKGDINCVGGAGNKILVCFNASPPE 413

Query: 332 I----LYYNVARRTWHWLPSC 348
           +      Y++    W+ LP C
Sbjct: 414 VYCRYFVYDLVAEEWNELPKC 434

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT21|FB165_ARATH F-box protein At3g19880 OS=Arabidopsis thaliana GN=At3g19880 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 7/174 (4%)

Query: 14  SRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHPQ 73
           S L +DL++ +LS +P   L  +RSTCK +N+L  S   +         F  F++L +  
Sbjct: 5   SDLTQDLVEEILSRVPITSLGAVRSTCKGWNAL--SKERILCIGEPKQQFLGFMMLDYRL 62

Query: 74  CYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS 133
           C  ++ L    HG      +  S+     + +   +  LLC +   SS  ++ N     +
Sbjct: 63  CSMRFNL----HGILNEDFVSISMYQVETSQVFYCAGLLLCVTREKSSRLIIWNPYLGQT 118

Query: 134 RTIDFPTYPFDFELLTL-VSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI 186
           R I+  T    +    L       +KI  +F   +  Y  +YD    SWS F++
Sbjct: 119 RWINTKTTKTGYNTYALGCDNNKNHKILKVFCDDYQCYYEIYDVKSNSWSAFNV 172

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGY4|FB341_ARATH F-box protein At5g49610 OS=Arabidopsis thaliana GN=At5g49610 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 120/310 (38%), Gaps = 69/310 (22%)

Query: 8   MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKH-------------FNSLLFSPSFLS 54
           MD    +  P++++  +L+ LP K L + +S CK              FN L      L 
Sbjct: 1   MDNQKGALFPDEVILQILARLPVKSLFRFKSVCKSWYRLPSDKYFTSLFNQLSVKEQLLV 60

Query: 55  KTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLL- 113
                SS+  C                D+  G    LSL +   +     +  SS GLL 
Sbjct: 61  AEVSDSSSLICV---------------DNLRGV-SELSLDF---VRDRVRIRVSSNGLLC 101

Query: 114 CFSLPSSSSFLVCNLVTLSSRTI----DFPTYPF----DFELLTLVSTPSGYKIFMLFA- 164
           C S+P    + VCN  T   R +    + P   F    +  L+ L    S  K  ++ A 
Sbjct: 102 CSSIPEKGVYYVCNPSTREYRKLPKSRERPVTRFYPDGEATLVGLACDLSKNKFNVVLAG 161

Query: 165 --KSF---PNYAF---VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP 216
             +SF   P+ +F   V+DS    W KF +        +  S  + VF  G L++     
Sbjct: 162 YHRSFGQRPDGSFICLVFDSESNKWRKF-VSVLEECSFTHMSKNQVVFVNGMLHWLMSGL 220

Query: 217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI--- 273
             I+  D+E+ +W           + LP E+   R+ N G   N++YL+   G   +   
Sbjct: 221 CYILALDVEHDVWR---------KISLPDEI---RIGNGG--GNRVYLLESDGFLSVIQL 266

Query: 274 -STTMKLWEL 282
               MK+W++
Sbjct: 267 SDVWMKIWKM 276

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ74|FB161_ARATH F-box protein At3g18910 OS=Arabidopsis thaliana GN=At3g18910 PE=1 SV=1

 Score = 48.5 bits (114), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 95/238 (39%), Gaps = 29/238 (12%)

Query: 10  PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILL 69
             I  +LP DL++ +L  +P   L +LRSTCK +N L      L+      SA   F  L
Sbjct: 2   KTIQEQLPNDLVEEILCRVPATSLRRLRSTCKAWNRLFKGDRILASKHFEKSA-KQFRSL 60

Query: 70  SHPQCYDQYPLYDSTHGTWRRLSLPYSLLLP----SAA-----TLLSSSKGLLCFSLPSS 120
           S    Y  +P+  + HG    L L   L+ P    SAA      ++     LLC S    
Sbjct: 61  SLRNDYRIFPISFNLHGNSPSLELKSELIDPHSKNSAAPFEISRVIHCEGLLLCSSQLDE 120

Query: 121 SSFLVCNLVTLSS---RTIDFPTYPFDFEL-----LTLVSTPSGYKIFMLFAKSFPNYAF 172
           S  +V N +T  +   RT DF      F++         S    YK+   +  +   Y  
Sbjct: 121 SRVVVWNPLTGETRWIRTGDFRQKGRSFDVGYYYQKDKRSWIKSYKLLCYYRGT--KYFE 178

Query: 173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYF-------TTPEPFSIVRFD 223
           +YD    SW   D    P   +  S  +  V  KG+ Y+         P   S+++FD
Sbjct: 179 IYDFDSDSWRILDDIIAPRGSIGYS--ELSVSLKGNTYWFAKGVTEERPRTISLLKFD 234

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUP4|FBK60_ARATH Putative F-box/kelch-repeat protein At3g17540 OS=Arabidopsis thaliana GN=At3g17540 PE=4 SV=1

 Score = 47.0 bits (110), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 50/280 (17%)

Query: 12  IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSH 71
           + S LP ++   +LS +P K L KL +TCK + +L   P F+ K    S       L+ H
Sbjct: 6   VISDLPHEIESEILSRVPTKSLAKLHTTCKRWYALFRDPRFVKKNFGKSERR----LMLH 61

Query: 72  PQCYDQYPLYDSTHGTWRRL--SLPYSLLLPS-------AATLLSSSKGLLCFSLPSSSS 122
              +  Y + D  HG       SL ++  L +         T +    GL+  S   ++ 
Sbjct: 62  SN-FGVYKITDDLHGILNSGDPSLEFTSKLSNLKISEDLTITKIFHCDGLILCSTKENTR 120

Query: 123 FLVCNLVTLSSRTIDFPTYPF---DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179
            +V N  T  +R I  P+  +   D   L  V++ S Y  + +       Y F Y+  D 
Sbjct: 121 LVVWNPCTGQTRWIK-PSKRYRSDDSYCLGYVNSKSSYHNYKIL-----RYCFYYNDQDA 174

Query: 180 SWSKFDIDGFPS---MILSQSSHQE------GVFYKGSLYFTTPEP---FSIVRFDLENG 227
             S+F+I  F S    +L     +E      G+  KG+ YF   E    F ++ FD +  
Sbjct: 175 CVSEFEIYDFSSESWRVLDDYCTREWGLFCHGMSLKGNTYFVAGEKETGFFMLYFDFKTE 234

Query: 228 IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGG 267
            +E          + LP++ +F     D E++  L ++GG
Sbjct: 235 RFE---------RLPLPYQ-SF-----DSEDTAVLSIVGG 259

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
224063447	374	predicted protein [Populus trichocarpa]	0.947	0.917	0.662	1e-126
224127272	373	f-box family protein [Populus trichocarp	0.947	0.919	0.646	1e-121
302142199	521	unnamed protein product [Vitis vinifera]	0.950	0.660	0.620	1e-112
225458836	372	PREDICTED: F-box/kelch-repeat protein At	0.950	0.924	0.620	1e-111
449450281	350	PREDICTED: F-box/kelch-repeat protein At	0.928	0.96	0.596	1e-111
356577799	359	PREDICTED: F-box/kelch-repeat protein At	0.944	0.952	0.577	1e-108
357437601	382	F-box/kelch-repeat protein [Medicago tru	0.961	0.910	0.570	1e-100
356509767	376	PREDICTED: F-box/kelch-repeat protein At	0.944	0.909	0.566	1e-86
18422304	403	F-box/kelch-repeat protein [Arabidopsis	0.953	0.856	0.520	3e-85
297791597	403	F-box family protein [Arabidopsis lyrata	0.953	0.856	0.515	4e-84

>gi|224063447|ref|XP_002301149.1| predicted protein [Populus trichocarpa] gi|222842875|gb|EEE80422.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/362 (66%), Positives = 271/362 (74%), Gaps = 19/362 (5%)

Query: 7   EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
           EMDPAIWSRLPE+LL+HVLS LP K LL LRSTCK F SL+FSPSF+SK     +AFS F
Sbjct: 14  EMDPAIWSRLPEELLEHVLSCLPLKTLLNLRSTCKRFKSLMFSPSFMSKHTTRGTAFSSF 73

Query: 67  ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAAT-------LLSSSKGLLCFSLPS 119
           +LLSHPQ Y Q+PLYDS  G+WR L+L  S LLP   +       LLSSS GL CFSLPS
Sbjct: 74  LLLSHPQFYQQFPLYDSIIGSWRHLALSLSFLLPVTGSNGSPSCSLLSSSNGLFCFSLPS 133

Query: 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179
           S+SFLVCN +  SSR ++FP+YPF FE L  VS P GYKIF+L +K   N  FVYDS   
Sbjct: 134 SNSFLVCNFLAKSSRIVEFPSYPFAFESLAFVSMPFGYKIFVLCSKFSSNSVFVYDSKVH 193

Query: 180 SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHM 239
           SW KFD       IL  +  QEGVF+ GSLYFTT EPFSIV FDLE+G WE  ++     
Sbjct: 194 SWQKFDRF---EPILGDNYRQEGVFFNGSLYFTTSEPFSIVCFDLESGRWERLDNE---- 246

Query: 240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMC 299
              LP +LTF RLV+DGE  NKLYLIGGVGRNGIS +MKLWELG G NWIEVE +PEMMC
Sbjct: 247 ---LPGDLTFVRLVSDGE--NKLYLIGGVGRNGISRSMKLWELGDGRNWIEVESLPEMMC 301

Query: 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
           +KF+SVCYHNY+ VYCFWHQGMIC+CCYTWPEILY  V+RRTWHWLP CPSLP KWSCGF
Sbjct: 302 KKFVSVCYHNYERVYCFWHQGMICICCYTWPEILYCKVSRRTWHWLPKCPSLPEKWSCGF 361

Query: 360 SW 361
            W
Sbjct: 362 RW 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127272|ref|XP_002320031.1| f-box family protein [Populus trichocarpa] gi|222860804|gb|EEE98346.1| f-box family protein [Populus trichocarpa]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/362 (64%), Positives = 267/362 (73%), Gaps = 19/362 (5%)

Query: 7   EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
           EMDPAIWSRLPE+LL+HVLSFLP KM L LRST KHF SLLFSPSF+SK   S S FS F
Sbjct: 13  EMDPAIWSRLPEELLEHVLSFLPLKMFLNLRSTSKHFKSLLFSPSFMSKHTASGSPFSSF 72

Query: 67  ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAA-------TLLSSSKGLLCFSLPS 119
           +LLSHPQ + Q+PLYDS  G+WR L+L  SLLLP          TLLSSS GL+CFSLPS
Sbjct: 73  LLLSHPQFFQQFPLYDSIVGSWRNLALSLSLLLPGTGSNASPSCTLLSSSNGLICFSLPS 132

Query: 120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ 179
           S S LVCN +  SSR ++FP++PF FE    VS   GYKIF+L +K   N  FVYDS   
Sbjct: 133 SCSLLVCNFMAKSSRIVEFPSHPFTFESFVFVSMSFGYKIFVLCSKFSSNSVFVYDSKVH 192

Query: 180 SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHM 239
           SW KFD       IL  +  QEGVF+ GSLYFTT EPFSIV FDLE+G W   ++     
Sbjct: 193 SWQKFDRF---EPILGDNYRQEGVFFNGSLYFTTSEPFSIVCFDLESGRWGRLDNE---- 245

Query: 240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMC 299
              LP ++TF RLV+DGE+  KLYLIGGVGRNGIS +MKLWEL    NWIEVE +PEMMC
Sbjct: 246 ---LPGDVTFVRLVSDGEK--KLYLIGGVGRNGISRSMKLWELDGERNWIEVESLPEMMC 300

Query: 300 RKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGF 359
           +KF+SVCYHNY+ VYCF H+GMIC+CCYTWPEILYY V+RRTWHWLP CPSLP KWSCGF
Sbjct: 301 KKFLSVCYHNYERVYCFLHEGMICICCYTWPEILYYKVSRRTWHWLPKCPSLPEKWSCGF 360

Query: 360 SW 361
            W
Sbjct: 361 RW 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142199|emb|CBI19402.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/369 (62%), Positives = 264/369 (71%), Gaps = 25/369 (6%)

Query: 4   KRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK------TK 57
           K +EMDP IW  LP +LL+HVLSFLP K    L  TCK F SL++SPSFL+K      + 
Sbjct: 143 KSQEMDPGIWGHLPVELLEHVLSFLPLKSFFNLLCTCKRFKSLIYSPSFLAKYSPSSSSS 202

Query: 58  CSSSAFSCFILLSHPQCYD-QYPLYDSTHGTWRRLSLPYSLLLPSAAT----LLSSSKGL 112
            SS A S F+LLSHPQ Y  + PLYDS  G WR LSL  S+LLP AAT    LLS++ GL
Sbjct: 203 SSSPALSSFLLLSHPQFYRHRLPLYDSAIGNWRNLSLTCSILLPYAATTAITLLSAANGL 262

Query: 113 LCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAF 172
           LCFSLP+SSSFLVCNL+  SSR + FP YPF FE+LTLV  P GYKIFM+ + S  N A+
Sbjct: 263 LCFSLPNSSSFLVCNLLVGSSRVLQFPGYPFAFEMLTLVPAPDGYKIFMIASGSSSNNAW 322

Query: 173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP 232
           VYDS   SW +F   GF    LS + HQ GV+  G LYF T EPFSIV FDLE+G+W   
Sbjct: 323 VYDSGVHSWREFQ--GFDP-TLSDNCHQ-GVYCNGVLYFCTSEPFSIVCFDLESGVW--- 375

Query: 233 NDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVE 292
               D   + LP ELTF +LV+DGE   KLYL+GG+GRNGIS +MKLWEL  G NW+ VE
Sbjct: 376 ----DRSVVELPGELTFVKLVSDGE--GKLYLVGGIGRNGISKSMKLWELE-GENWVLVE 428

Query: 293 RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLP 352
            +PE MC+K +SVCYHNY+HVYCFWHQ  ICVCCYTWPEILYY VARRTWHWLP CPSLP
Sbjct: 429 SLPEFMCQKLVSVCYHNYEHVYCFWHQETICVCCYTWPEILYYKVARRTWHWLPKCPSLP 488

Query: 353 HKWSCGFSW 361
            KWSCGF W
Sbjct: 489 DKWSCGFRW 497

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458836|ref|XP_002285319.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/369 (62%), Positives = 264/369 (71%), Gaps = 25/369 (6%)

Query: 4   KRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK------TK 57
           K +EMDP IW  LP +LL+HVLSFLP K    L  TCK F SL++SPSFL+K      + 
Sbjct: 7   KSQEMDPGIWGHLPVELLEHVLSFLPLKSFFNLLCTCKRFKSLIYSPSFLAKYSPSSSSS 66

Query: 58  CSSSAFSCFILLSHPQCY-DQYPLYDSTHGTWRRLSLPYSLLLPSAAT----LLSSSKGL 112
            SS A S F+LLSHPQ Y  + PLYDS  G WR LSL  S+LLP AAT    LLS++ GL
Sbjct: 67  SSSPALSSFLLLSHPQFYRHRLPLYDSAIGNWRNLSLTCSILLPYAATTAITLLSAANGL 126

Query: 113 LCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAF 172
           LCFSLP+SSSFLVCNL+  SSR + FP YPF FE+LTLV  P GYKIFM+ + S  N A+
Sbjct: 127 LCFSLPNSSSFLVCNLLVGSSRVLQFPGYPFAFEMLTLVPAPDGYKIFMIASGSSSNNAW 186

Query: 173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP 232
           VYDS   SW +F   GF    LS + HQ GV+  G LYF T EPFSIV FDLE+G+W   
Sbjct: 187 VYDSGVHSWREFQ--GFDP-TLSDNCHQ-GVYCNGVLYFCTSEPFSIVCFDLESGVW--- 239

Query: 233 NDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVE 292
               D   + LP ELTF +LV+DGE   KLYL+GG+GRNGIS +MKLWEL  G NW+ VE
Sbjct: 240 ----DRSVVELPGELTFVKLVSDGE--GKLYLVGGIGRNGISKSMKLWELE-GENWVLVE 292

Query: 293 RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLP 352
            +PE MC+K +SVCYHNY+HVYCFWHQ  ICVCCYTWPEILYY VARRTWHWLP CPSLP
Sbjct: 293 SLPEFMCQKLVSVCYHNYEHVYCFWHQETICVCCYTWPEILYYKVARRTWHWLPKCPSLP 352

Query: 353 HKWSCGFSW 361
            KWSCGF W
Sbjct: 353 DKWSCGFRW 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450281|ref|XP_004142892.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Cucumis sativus] gi|449482711|ref|XP_004156380.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Cucumis sativus]

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/357 (59%), Positives = 259/357 (72%), Gaps = 21/357 (5%)

Query: 8   MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFI 67
           MDP IWSRLP +LLDHVLSFL  +    LRSTCKHF+SLL+SPSF+SK   SS +    +
Sbjct: 1   MDPGIWSRLPPELLDHVLSFLSLRTYFNLRSTCKHFDSLLYSPSFVSKHSDSSFSSF--L 58

Query: 68  LLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSS---SKGLLCFSLPSSSSFL 124
           LL+HPQC+ Q+PLYDS  GTWR   L  S+ L S++   S    + GL+CFSL  S SFL
Sbjct: 59  LLAHPQCFSQFPLYDSARGTWRSFPLSLSVSLLSSSPSTSLLSTANGLVCFSLRHSGSFL 118

Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF 184
           VCN +T SSR I+FP +PF FELLTLVS P GYKIFMLF  S    A V+DS + SW +F
Sbjct: 119 VCNFLTKSSRLIEFPYHPFAFELLTLVSVPLGYKIFMLFFDS----ALVFDSRNHSWRRF 174

Query: 185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLP 244
           D   F   I+  +  QE  +Y G LYF TPEPFSIV FDL+NG WE  +       +++P
Sbjct: 175 D--NFEP-IIGDNHRQEAAYYNGRLYFVTPEPFSIVSFDLDNGEWEQTD-------IVMP 224

Query: 245 HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMS 304
            ELTF RLV+DG+   KLY+IGG GRNGIS +++LWE    GNW+EVE VP+M+C+KFMS
Sbjct: 225 EELTFVRLVSDGD--TKLYMIGGTGRNGISRSLRLWEFSEQGNWVEVESVPQMICKKFMS 282

Query: 305 VCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSW 361
           +CYHNY+HVYCFWHQG IC+CCYTWPEILYY + RR+WHWLP CPS+P +WSCGF W
Sbjct: 283 ICYHNYEHVYCFWHQGTICLCCYTWPEILYYKICRRSWHWLPKCPSVPERWSCGFRW 339

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356577799|ref|XP_003557010.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Glycine max]

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/360 (57%), Positives = 261/360 (72%), Gaps = 18/360 (5%)

Query: 8   MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK--TKCSSSAFSC 65
           MDP IWS+LP ++L+++LSFLP K  L LRSTCK F SL+FSP F+SK  +  +SS FS 
Sbjct: 1   MDPIIWSKLPPEILEYILSFLPLKTFLNLRSTCKGFWSLIFSPPFISKHCSPTASSPFSS 60

Query: 66  FILLSHPQCYDQYPLYDSTHGTWRRLSLPYS---LLLPSAATLLSSSKGLLCFSLPSSSS 122
           F+LLSHPQ +  +PLYD T GTWR  SL  S      PS +TL+SS  GL C S  +S S
Sbjct: 61  FLLLSHPQFHRHFPLYDCTLGTWRNFSLSLSDSFHSFPSFSTLISSG-GLFCLSDSTSCS 119

Query: 123 FLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS 182
            LVCNL+  SSR I +P++    E LT V+TP+GY IF+LF+++  N AFVYDS  Q+W 
Sbjct: 120 LLVCNLLAKSSRKIQYPSFSLHLEHLTFVTTPTGYTIFVLFSEAASNCAFVYDSKVQTWK 179

Query: 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMM 242
           +F   GF + +L  +  Q+GV + G LYF TPEPFS+V FDL++G WE P      +  +
Sbjct: 180 RFR--GF-APVLGDNHQQQGVLFNGGLYFATPEPFSVVMFDLKSGRWERP------VWEL 230

Query: 243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRK 301
             H LTF RLV+DG    KLYL+GGVG NGIS ++KLWELG  GN W+EV+ +P++MCRK
Sbjct: 231 PSHHLTFVRLVSDG--GGKLYLVGGVGSNGISRSIKLWELGGDGNYWVEVQSLPDLMCRK 288

Query: 302 FMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSW 361
           F+SVCYHNY+HVYCFWH+GMIC+CCYTWPEILYY ++RRTWHWLP CPSLP K SCGF W
Sbjct: 289 FVSVCYHNYEHVYCFWHEGMICICCYTWPEILYYLLSRRTWHWLPRCPSLPLKCSCGFKW 348

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437601|ref|XP_003589076.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355478124|gb|AES59327.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/370 (57%), Positives = 260/370 (70%), Gaps = 22/370 (5%)

Query: 4   KRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK----TKCS 59
           K   MDP IWS+LP ++L+++LSFLP K  + LRSTCK F  L+FSPSF+SK    +  S
Sbjct: 12  KSLPMDPTIWSKLPPEILEYILSFLPLKTFMSLRSTCKGFWPLIFSPSFISKHSPSSSSS 71

Query: 60  SSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAA--TLLSSSKGLLCFSL 117
           SS FS F+LLSHPQ +  +PLYD   GTWR +SL +S  L S+   T L SS GL C S 
Sbjct: 72  SSPFSSFLLLSHPQFHRHFPLYDCNLGTWRNISLSFSDSLHSSPSFTTLVSSGGLFCLSD 131

Query: 118 PSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST 177
             S S LVCNL+  S R I +P +    E LT V+TP GY IF+L ++S  N  F+YDS+
Sbjct: 132 SLSCSLLVCNLLAKSKRKIQYPNFNLHIEHLTFVTTPKGYMIFVLSSESNSNSVFLYDSS 191

Query: 178 DQ--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA 235
            +  SW KF+  GF    LS + HQ+GV++KG LYF TPEPFS+V FDLE+G WE P   
Sbjct: 192 SRVLSWRKFN--GF-GPTLSDNPHQQGVYFKGCLYFATPEPFSVVYFDLESGKWEKPIGN 248

Query: 236 NDHMTMMLPHELTFFRLV--NDG--EESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEV 291
                  LP +LTF RLV  ND   EE  KL+LIGGVG NGIS ++KLWE+   GNW+E+
Sbjct: 249 -------LPEQLTFVRLVSVNDDAVEEGKKLFLIGGVGSNGISRSIKLWEMSEEGNWVEI 301

Query: 292 ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSL 351
           + +P++MCRKF+SVCYHNY+HVYCFWH+GMIC+CCYTWPEILYY V+RRTWHWLP CPSL
Sbjct: 302 QSLPDLMCRKFVSVCYHNYEHVYCFWHEGMICICCYTWPEILYYLVSRRTWHWLPRCPSL 361

Query: 352 PHKWSCGFSW 361
           P K SCGF W
Sbjct: 362 PFKCSCGFKW 371

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509767|ref|XP_003523617.1| PREDICTED: F-box/kelch-repeat protein At5g43190-like [Glycine max]

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 204/360 (56%), Positives = 249/360 (69%), Gaps = 18/360 (5%)

Query: 8   MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSC-F 66
           MDP IWS+LP D+++H+L  LP K LL LR TCK F SLLFSPSF+SK   SSS+    +
Sbjct: 18  MDPRIWSKLPPDVVEHILLLLPLKTLLNLRPTCKAFTSLLFSPSFVSKHSSSSSSPFSSY 77

Query: 67  ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAA--TLLSSSKGLLCFSLPSSSSFL 124
           +L+SHPQC   + LYDS   +WR LSL  S  L  +A  TL+SSS GL C   P+SSSFL
Sbjct: 78  LLISHPQCPHYFRLYDSNLCSWRTLSLSLSNSLHLSASFTLVSSSGGLFCLYNPTSSSFL 137

Query: 125 VCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYA-FVYDSTDQSWS 182
           V NL   SSR I+ P T       +T V+TP GY I +L +KS  N + FVYDS+  SW 
Sbjct: 138 VHNLFVRSSRKIESPITRSRHLGHVTFVTTPLGYYIVLLCSKSTSNTSVFVYDSSKLSWR 197

Query: 183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMM 242
            F+  GF +++ S S HQ+G F+ G LYFTTPEPFS+V FDLE+G WE            
Sbjct: 198 CFE--GF-NVVFSDSFHQQGTFFDGGLYFTTPEPFSVVFFDLESGEWE-------RYVAE 247

Query: 243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRK 301
           LP ++TF RLV+D  E  KLYL+GGVG +GIS ++KLWEL  G   W+EV  +PE+MCRK
Sbjct: 248 LPQQVTFVRLVSD--EEGKLYLLGGVGNDGISRSIKLWELIKGERVWVEVVGLPEIMCRK 305

Query: 302 FMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSW 361
           F+SVCYHNY+HVYCFWH+GMICVC Y WPEILYY+V RRTW WLP CP LP K+SCGF W
Sbjct: 306 FVSVCYHNYEHVYCFWHEGMICVCFYMWPEILYYSVLRRTWDWLPRCPYLPLKFSCGFKW 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18422304|ref|NP_568622.1| F-box/kelch-repeat protein [Arabidopsis thaliana] gi|75170673|sp|Q9FHS6.1|FK119_ARATH RecName: Full=F-box/kelch-repeat protein At5g43190 gi|10177381|dbj|BAB10582.1| unnamed protein product [Arabidopsis thaliana] gi|27765056|gb|AAO23649.1| At5g43190 [Arabidopsis thaliana] gi|110743394|dbj|BAE99583.1| hypothetical protein [Arabidopsis thaliana] gi|332007539|gb|AED94922.1| F-box/kelch-repeat protein [Arabidopsis thaliana]

 Score =  321 bits (823), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 188/361 (52%), Positives = 239/361 (66%), Gaps = 16/361 (4%)

Query: 7   EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
            +DP IWS LP  LL+H+LS LP K LL LRS  +H  SL+ SPSF+S     S +   F
Sbjct: 42  NLDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSF 98

Query: 67  ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFL-- 124
           +LLSHPQ ++ +PL++    +W  L LP SL L  A++LLSSS GLLCFSL  SS     
Sbjct: 99  LLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLS 158

Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFML---FAKSFPNYAFVYDSTDQSW 181
           + N +T SSR+I  P YPF FELL+LV++P GYKIF L    + +      +YDS D+SW
Sbjct: 159 IFNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSW 218

Query: 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTM 241
            KF   G    +L +  +Q+GVFY GSLYF   EPF IV  DL +G W T   A      
Sbjct: 219 RKF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGVF 272

Query: 242 MLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCR 300
               E+TF RLV+D E+   LY++GG+G NGI  ++K+WE      +WIEVE +P+++CR
Sbjct: 273 PADDEITFARLVSDPEK-KILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCR 331

Query: 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFS 360
           KF SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF 
Sbjct: 332 KFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGFR 391

Query: 361 W 361
           W
Sbjct: 392 W 392

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791597|ref|XP_002863683.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297309518|gb|EFH39942.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  317 bits (813), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/361 (51%), Positives = 240/361 (66%), Gaps = 16/361 (4%)

Query: 7   EMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCF 66
            MDP IWS LP  LL+H+LS LP K LL LRS  +H  SL+ SPSF+S     S +   F
Sbjct: 42  NMDPTIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSF 98

Query: 67  ILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFL-- 124
           +LLSHPQ ++ +PL++    +W  L LP SL L +A++LLSSS GLLCFS+  SS     
Sbjct: 99  LLLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTNASSLLSSSNGLLCFSISPSSVSSLS 158

Query: 125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFML---FAKSFPNYAFVYDSTDQSW 181
           + N +T SSR+I  P YPF FELL+L+++P GYKIF L    + +      +YDS D+SW
Sbjct: 159 IFNPLTRSSRSIKLPCYPFHFELLSLLTSPEGYKIFTLCSSSSAASSRSVCLYDSGDRSW 218

Query: 182 SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTM 241
            KF   G    +L +  +Q+GVFY GSLYF   EPF IV  DL +G W T   A      
Sbjct: 219 RKF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGFF 272

Query: 242 MLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCR 300
              + +TF RLV+D  + N LY++GG+G NGI  ++K+WE      +WIEVE +P+++CR
Sbjct: 273 PADNLITFARLVSDPVK-NILYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCR 331

Query: 301 KFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFS 360
           KF SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF 
Sbjct: 332 KFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGFR 391

Query: 361 W 361
           W
Sbjct: 392 W 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2169253	403	AT5G43190 "AT5G43190" [Arabido	0.950	0.853	0.45	1.2e-81
TAIR|locus:2143256	448	AT5G15710 "AT5G15710" [Arabido	0.566	0.457	0.260	3.2e-20
TAIR|locus:2015766	442	UFO "AT1G30950" [Arabidopsis t	0.582	0.477	0.216	2.5e-11
TAIR|locus:2015974	467	LCR "AT1G27340" [Arabidopsis t	0.513	0.398	0.260	2e-10
TAIR|locus:2125889	457	AT4G33160 "AT4G33160" [Arabido	0.618	0.490	0.225	1.3e-06
TAIR|locus:2082797	411	HWS "HAWAIIAN SKIRT" [Arabidop	0.270	0.238	0.261	1.5e-06

TAIR|locus:2169253 AT5G43190 "AT5G43190" [Arabidopsis thaliana (taxid:3702)]

 Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
 Identities = 162/360 (45%), Positives = 208/360 (57%)

Query:     8 MDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHXXXXXXXXXXXXKTKCSSSAFSCFI 67
             +DP IWS LP  LL+H+LS LP K LL LRS  +H                 S +   F+
Sbjct:    43 LDPNIWSNLPNHLLEHILSLLPFKTLLTLRSISRHLRSLILSPSFISD---HSFSLPSFL 99

Query:    68 LLSHPQCYDQYPLYDSTHGTWRRXXXXXXXXXXXXXXXXXXXKGXX--XXXXXXXXXXXV 125
             LLSHPQ ++ +PL++    +W                      G               +
Sbjct:   100 LLSHPQSFNSFPLFNPNLISWCTLPLPRSLSLTCASSLLSSSNGLLCFSLSPSSVSSLSI 159

Query:   126 CNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWS 182
              N +T SSR+I  P YPF FELL+LV++P GYKIF L + S         +YDS D+SW 
Sbjct:   160 FNPLTRSSRSIKLPCYPFPFELLSLVTSPKGYKIFTLCSSSSAASSRSVCLYDSGDRSWR 219

Query:   183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMM 242
             KF   G    +L +  +Q+GVFY GSLYF   EPF IV  DL +G W T   A       
Sbjct:   220 KF---GGVDQVLPRGFNQDGVFYNGSLYFARSEPFLIVSVDLNDGKWTT---ATGDGVFP 273

Query:   243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRK 301
                E+TF RLV+D E+   LY++GG+G NGI  ++K+WE      +WIEVE +P+++CRK
Sbjct:   274 ADDEITFARLVSDPEKKI-LYMVGGIGSNGICRSIKIWEFKEETESWIEVETLPDIVCRK 332

Query:   302 FMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFSW 361
             F SVCYHNY+HVYC WH+ MICVCCY WPEIL+++V RRTWHW+P CPSLP KWSCGF W
Sbjct:   333 FTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHWVPKCPSLPEKWSCGFRW 392

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0006865 "amino acid transport" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2143256 AT5G15710 "AT5G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
 Identities = 60/230 (26%), Positives = 101/230 (43%)

Query:   125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAF---VYDSTDQ 179
             VCN +  S RT+    Y    +L+ +V      K F + A S  + + +    VYDS   
Sbjct:   217 VCNPLMQSWRTLPSMHYNQQRQLIMVVDRSD--KSFKVIATSDIYGDKSLPTEVYDSKTD 274

Query:   180 SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHM 239
              WS   I   P++ L  S      +    LY  T  P  ++ + L++G WE       H+
Sbjct:   275 KWSLHQI--MPAVNLCSSKM---AYCDSRLYLETLSPLGLMMYRLDSGQWE-------HI 322

Query:   240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG-CGGNWIEVERVPEMM 298
                 P  L    LV   ++  +L+L+G +G      +M++WEL     +W+E+ R+P   
Sbjct:   323 PAKFPRSLLDGYLVAGTQK--RLFLVGRIGLYSTLQSMRIWELDHTKVSWVEISRMPPKY 380

Query:   299 CRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSC 348
              R  + +    ++   CF    +IC   +   + L YNV ++ W W+  C
Sbjct:   381 FRALLRLSAERFE---CFGQDNLICFTSWNQGKGLLYNVDKKIWSWISGC 427

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015766 UFO "AT1G30950" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 51/236 (21%), Positives = 102/236 (43%)

Query:   125 VCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF 184
             +CN +  S   +   + P  F  + L  TP+   + +        YA V + + +S+   
Sbjct:   175 LCNPLVGSVSQLPPISRPRLFPSIGLSVTPTSIDVTVAGDDLISPYA-VKNLSSESFH-V 232

Query:   185 DIDGFPSM-ILSQS-----SHQEG--VFYKGSLYFTTPEPFSIVRFDLENGIWETPNDAN 236
             D  GF S+  ++ S     S + G  V+ +G  Y     PFS++ +++    W       
Sbjct:   233 DAGGFFSLWAMTSSLPRLCSLESGKMVYVQGKFYCMNYSPFSVLSYEVTGNRW------- 285

Query:   237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST--TMKLWELGC-GGNWIEVER 293
               + +  P    F R  +  E   +L L+  V ++ ++   +++LW L      W+E+ER
Sbjct:   286 --IKIQAPMR-RFLRSPSLLESKGRLILVAAVEKSKLNVPKSLRLWSLQQDNATWVEIER 342

Query:   294 VPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCP 349
             +P+ +  +F +          C  +Q  + +        L +++ R++W W+P CP
Sbjct:   343 MPQPLYTQFAAE--EGGKGFECVGNQEFVMIVLRGTSLQLLFDIVRKSWLWVPPCP 396

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0000151 "ubiquitin ligase complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=RCA

TAIR|locus:2015974 LCR "AT1G27340" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
 Identities = 57/219 (26%), Positives = 98/219 (44%)

Query:   152 STPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMI---LSQSSHQEGVFYKGS 208
             ST  GYK+  +  +    Y  VYDS    W+K      PS I   +  +   + V    +
Sbjct:   259 STSHGYKVLWVGCEG--EYE-VYDSLSNVWTKRGT--IPSNIKLPVLLNFKSQPVAIHST 313

Query:   209 LYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV 268
             LYF   +P  I+ +D+ +G W+          +  P +L+   L   GE   +L L+G +
Sbjct:   314 LYFMLTDPEGILSYDMVSGKWK-------QFIIPGPPDLSDHTLAACGE---RLMLVGLL 363

Query:   269 GRNGISTTMKLWELG-CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY 327
              +N  +T + +WEL      W EV+R+P + C +F    Y  +  + C  ++G + +   
Sbjct:   364 TKNA-ATCVCIWELQKMTLLWKEVDRMPNIWCLEF----YGKHIRMNCLGNKGCLILLSL 418

Query:   328 TWPE---ILYYNVARRTWHWLPSCPSLPHK----W-SCG 358
                +   ++ YN   R W  +P C ++P      W +CG
Sbjct:   419 RSRQMNRLITYNAVTREWTKVPGC-TVPRGRKRLWIACG 456

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010928 "regulation of auxin mediated signaling pathway" evidence=IMP

GO:0060776 "simple leaf morphogenesis" evidence=IMP

TAIR|locus:2125889 AT4G33160 "AT4G33160" [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 56/248 (22%), Positives = 99/248 (39%)

Query:    16 LPEDLLDHVLSFLPPKMLLKLRSTCKHXXXXXXXXXXXXKTKCSS--SAFSCFILLSHPQ 73
             L +D+L+ VLS+LP     ++ S CK             K  CS   +    F ++ +  
Sbjct:    70 LNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSF--KLACSQIPTRDPWFFMIDNDS 127

Query:    74 CYDQYPLYDSTHGTWRRXXXXXXXXXXXXXXXXXXXKGXXXXXXXXXXXXXVC-NLVTLS 132
                 + ++DST  +W+                     G             +  N +T S
Sbjct:   128 NSSSF-VFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCYRCSISGDFLLRNPLTGS 186

Query:   133 SRTIDFPTY------PFDFELLTLVS-TPSGYKIFMLFAKSFPNYAF-VYDSTDQSWSKF 184
             SR  D P+       P     +T  + TPS Y +  +  +  PN +F +Y+S   SWSK 
Sbjct:   187 SR--DIPSQDNNNNKPLQAVAMTTTTVTPSSYTLVTISGE-IPNLSFKIYESNADSWSK- 242

Query:   185 DIDGFPSMILSQSS-HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDA-NDHMTMM 242
             D +   S+  + SS H +     G++YF + +   +V     N +  +P+   +  +T+ 
Sbjct:   243 DQE-LESVKNNDSSLHDDYDTDSGTVYFLSKQGNVVVA---SNNLQRSPSKQYSSVITVT 298

Query:   243 LPHELTFF 250
                E+ +F
Sbjct:   299 DEAEIVYF 306

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2082797 HWS "HAWAIIAN SKIRT" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
 Identities = 29/111 (26%), Positives = 55/111 (49%)

Query:   243 LPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMK---LWELGCGGNWIEVERVPEMMC 299
             +P  LT  RL+N  E   +L ++GG+G++     +K   +W L  G  W+E+ ++P+   
Sbjct:   287 MPCSLTCGRLMNLRE---RLVIVGGIGKHDRPEVIKGIGIWVLK-GKEWVEMAKMPQ--- 339

Query:   300 RKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARRTWHWLPSCP 349
             R F    +  +D V+       ++ +  Y  P +L +++  + W W   CP
Sbjct:   340 RFFQG--FGEFDEVFASSGTDDLVYIQSYGSPALLTFDMNLKYWRWSQKCP 388

GO:0005634 "nucleus" evidence=ISM

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0048513 "organ development" evidence=IMP

GO:0006869 "lipid transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FHS6	FK119_ARATH	No assigned EC number	0.5207	0.9530	0.8560	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
pfam12937	47	pfam12937, F-box-like, F-box-like	3e-07
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	4e-07
pfam00646	48	pfam00646, F-box, F-box domain	6e-06

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
           S LP+++L  + S+L P+ LL+L   C+ +  L    S 
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSL 40

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 45.5 bits (109), Expect = 4e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 16 LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKT 56
          LP+++L+ +LS L PK LL+LR   + + SL+ S  F  K 
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 18/44 (40%), Positives = 23/44 (52%)

Query: 12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSK 55
              LP+DLL  +LS L PK LL+L    K + SL+ S     K
Sbjct: 2  SLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKK 45

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.94
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.94
PHA02713	557	hypothetical protein; Provisional	99.93
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.86
PHA02713	557	hypothetical protein; Provisional	99.83
PHA03098	534	kelch-like protein; Provisional	99.83
PHA02790	480	Kelch-like protein; Provisional	99.83
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.81
PLN02153	341	epithiospecifier protein	99.81
PHA02790	480	Kelch-like protein; Provisional	99.79
PLN02193	470	nitrile-specifier protein	99.78
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.76
PLN02153	341	epithiospecifier protein	99.73
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.73
PHA03098	534	kelch-like protein; Provisional	99.72
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.69
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.69
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.68
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.65
PLN02193	470	nitrile-specifier protein	99.63
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.49
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.25
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.02
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.01
KOG1230	521	consensus Protein containing repeated kelch motifs	98.98
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.96
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.93
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.78
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.7
KOG1230	521	consensus Protein containing repeated kelch motifs	98.66
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	98.6
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.41
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	98.0
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.77
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	97.66
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	97.59
PF13964	50	Kelch_6: Kelch motif	97.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.47
PF13964	50	Kelch_6: Kelch motif	97.38
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	97.32
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.28
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.27
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	96.77
smart00612	47	Kelch Kelch domain.	96.71
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.68
PF13415	49	Kelch_3: Galactose oxidase, central domain	96.64
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	96.3
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	96.25
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	96.19
KOG0316	307	consensus Conserved WD40 repeat-containing protein	96.1
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.83
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.64
smart00612	47	Kelch Kelch domain.	95.4
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	94.93
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	94.67
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.54
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.43
PF13415	49	Kelch_3: Galactose oxidase, central domain	94.43
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	93.89
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	93.76
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	93.35
PLN02772	398	guanylate kinase	93.18
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	93.07
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	92.74
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	91.61
PRK11028	330	6-phosphogluconolactonase; Provisional	91.12
PRK11028	330	6-phosphogluconolactonase; Provisional	90.45
PF13854	42	Kelch_5: Kelch motif	89.84
smart00284	255	OLF Olfactomedin-like domains.	89.47
KOG0293	519	consensus WD40 repeat-containing protein [Function	89.4
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	88.56
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	88.21
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	88.09
KOG4341	483	consensus F-box protein containing LRR [General fu	87.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	87.89
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	87.07
KOG0310	487	consensus Conserved WD40 repeat-containing protein	86.62
PF13013	109	F-box-like_2: F-box-like domain	85.24
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	84.92
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	84.64
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	84.26
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	83.94
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	83.26
PF12768	281	Rax2: Cortical protein marker for cell polarity	82.2
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	82.04
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	80.42
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	80.38
COG4946	668	Uncharacterized protein related to the periplasmic	80.35

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.94  E-value=1e-24  Score=187.79  Aligned_cols=208  Identities=25%  Similarity=0.423  Sum_probs=148.3

Q ss_pred             EecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCC---Cc--cceEEEEeCCCceEEEEEeeec---CCCeEEEEeCC
Q 018005          106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP---FD--FELLTLVSTPSGYKIFMLFAKS---FPNYAFVYDST  177 (362)
Q Consensus       106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~---~~--~~~~~~~~~~~~ykv~~~~~~~---~~~~~~vy~s~  177 (362)
                      +++||||||+...  ..++||||.|++++.||+++.+   ..  ..++|++..+++|||+.+....   ....++||+++
T Consensus         1 ~~sCnGLlc~~~~--~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~   78 (230)
T TIGR01640         1 VVPCDGLICFSYG--KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLG   78 (230)
T ss_pred             CcccceEEEEecC--CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeC
Confidence            3689999998764  7899999999999999976542   11  2467888878999999987642   23589999999


Q ss_pred             CCcccccccCCCCccccccCCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeec-CCCCCcccccCCCCcc----
Q 018005          178 DQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWET-PNDANDHMTMMLPHEL----  247 (362)
Q Consensus       178 ~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~~----  247 (362)
                      +++|+...  ..+....   ....+|++||.+||+....     ..|++||+.+|+|+. ++         +|...    
T Consensus        79 ~~~Wr~~~--~~~~~~~---~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~---------~P~~~~~~~  144 (230)
T TIGR01640        79 SNSWRTIE--CSPPHHP---LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP---------LPCGNSDSV  144 (230)
T ss_pred             CCCccccc--cCCCCcc---ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee---------cCccccccc
Confidence            99999987  3333111   1223999999999997532     279999999999994 55         33322    


Q ss_pred             cccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEE
Q 018005          248 TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVC  325 (362)
Q Consensus       248 ~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  325 (362)
                      ....|+ +  ++|+|+++....   ...+++||.|++.+.  |++..+++.....++..    . ....++.+++.|++.
T Consensus       145 ~~~~L~-~--~~G~L~~v~~~~---~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~----~-~~~~~~~~~g~I~~~  213 (230)
T TIGR01640       145 DYLSLI-N--YKGKLAVLKQKK---DTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVD----D-NFLSGFTDKGEIVLC  213 (230)
T ss_pred             cceEEE-E--ECCEEEEEEecC---CCCcEEEEEECCCCCCceeEEEEEcCcchhhhhh----h-eeEeEEeeCCEEEEE
Confidence            234566 4  899999997732   224599999986543  99999887533322221    1 224456677888877


Q ss_pred             eec-CCe-EEEEECCCC
Q 018005          326 CYT-WPE-ILYYNVARR  340 (362)
Q Consensus       326 ~~~-~~~-v~~yd~~~~  340 (362)
                      .+. .+. ++.||+++|
T Consensus       214 ~~~~~~~~~~~y~~~~~  230 (230)
T TIGR01640       214 CEDENPFYIFYYNVGEN  230 (230)
T ss_pred             eCCCCceEEEEEeccCC
Confidence            643 234 999999886

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.94  E-value=4.4e-24  Score=204.42  Aligned_cols=239  Identities=15%  Similarity=0.170  Sum_probs=185.6

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCCCCccceEE
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLT  149 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~  149 (362)
                      ..+..|||..+.|..+.   .++.++....+++.+|.||+.++.+      +.+.+|||.+++|..+|+|..+|...+++
T Consensus       301 ~~ve~yd~~~~~w~~~a---~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~  377 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLA---PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA  377 (571)
T ss_pred             ceeEEecCCcCcEeecC---CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE
Confidence            45778999999999986   3344555667888899999988754      37899999999999999998888776665


Q ss_pred             EEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC------CcEEE
Q 018005          150 LVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIV  220 (362)
Q Consensus       150 ~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~------~~~i~  220 (362)
                      ...    .+|+++||...   ..++|.||+.+++|...+  .|+.    .+..+..+.++|++|.+++.      -.++.
T Consensus       378 ~l~----g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~----~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve  447 (571)
T KOG4441|consen  378 VLD----GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLT----RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVE  447 (571)
T ss_pred             EEC----CEEEEEeccccccccccEEEecCCCCcccccC--CCCc----ceeeeEEEEECCEEEEEcCcCCCccccceEE
Confidence            443    38999998753   348999999999999998  6665    34677788999999999873      25799


Q ss_pred             EEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHH
Q 018005          221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCR  300 (362)
Q Consensus       221 ~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~  300 (362)
                      +|||.+++|+.++ |       |+..+.+..+.+   .+|+||++||..+.....+++.|+. ..++|+.+..|..    
T Consensus       448 ~YDP~t~~W~~~~-~-------M~~~R~~~g~a~---~~~~iYvvGG~~~~~~~~~VE~ydp-~~~~W~~v~~m~~----  511 (571)
T KOG4441|consen  448 CYDPETNTWTLIA-P-------MNTRRSGFGVAV---LNGKIYVVGGFDGTSALSSVERYDP-ETNQWTMVAPMTS----  511 (571)
T ss_pred             EEcCCCCceeecC-C-------cccccccceEEE---ECCEEEEECCccCCCccceEEEEcC-CCCceeEcccCcc----
Confidence            9999999999863 6       777777777774   9999999999875434556777744 2445999987742    


Q ss_pred             HhhhccccCCccEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEEcCCCCCCC
Q 018005          301 KFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHWLPSCPSLP  352 (362)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~~~~~~~~~  352 (362)
                              ......++..++.||+.++..     ..+.+||+++++|+..+. +...
T Consensus       512 --------~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~-~~~~  559 (571)
T KOG4441|consen  512 --------PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE-PESG  559 (571)
T ss_pred             --------ccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC-cccc
Confidence                    122344567789999987532     359999999999999988 4433

>PHA02713 hypothetical protein; Provisional

Probab=99.93  E-value=4.7e-24  Score=204.98  Aligned_cols=235  Identities=11%  Similarity=0.111  Sum_probs=173.8

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCCCCccceEEE
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLTL  150 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~  150 (362)
                      .+..||+..++|..++   ++|.+.....+++.+|.|++.++..      ..+.+|||.+++|..+|+++.++...+++.
T Consensus       273 ~v~~yd~~~~~W~~l~---~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~  349 (557)
T PHA02713        273 CILVYNINTMEYSVIS---TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV  349 (557)
T ss_pred             CEEEEeCCCCeEEECC---CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE
Confidence            4678999999999986   3333444445667788888877632      468899999999999999988776655544


Q ss_pred             EeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC-----------
Q 018005          151 VSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-----------  216 (362)
Q Consensus       151 ~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~-----------  216 (362)
                      ...    +|+++||...   ...+++||+.+++|+..+  .||.    .+.....+.++|++|++|+..           
T Consensus       350 ~~g----~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~--~mp~----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        350 IDD----TIYAIGGQNGTNVERTIECYTMGDDKWKMLP--DMPI----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             ECC----EEEEECCcCCCCCCceEEEEECCCCeEEECC--CCCc----ccccccEEEECCEEEEEeCCCccccccccccc
Confidence            333    8999998643   247999999999999988  7775    234566788999999998742           


Q ss_pred             ------------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCc-cceEEEEEEC
Q 018005          217 ------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI-STTMKLWELG  283 (362)
Q Consensus       217 ------------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~-~~~i~vw~l~  283 (362)
                                  ..+.+|||.+++|+.+. |       ||..+....+++   .+|+||++||..+... ...+++|+.+
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~-------m~~~r~~~~~~~---~~~~IYv~GG~~~~~~~~~~ve~Ydp~  488 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLP-N-------FWTGTIRPGVVS---HKDDIYVVCDIKDEKNVKTCIFRYNTN  488 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecC-C-------CCcccccCcEEE---ECCEEEEEeCCCCCCccceeEEEecCC
Confidence                        35899999999999864 5       666666666774   8999999998643221 2346677442


Q ss_pred             CCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC--eEEEEECCCCceEEcCC
Q 018005          284 CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP--EILYYNVARRTWHWLPS  347 (362)
Q Consensus       284 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~v~~yd~~~~~w~~~~~  347 (362)
                      .++.|+.+.+||...            ....++..+|.||+.++..+  .+.+||+.+++|+.+.+
T Consensus       489 ~~~~W~~~~~m~~~r------------~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        489 TYNGWELITTTESRL------------SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH  542 (557)
T ss_pred             CCCCeeEccccCccc------------ccceeEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence            114599999987422            22445567899999987555  68999999999998843

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.86  E-value=4e-20  Score=177.28  Aligned_cols=203  Identities=13%  Similarity=0.110  Sum_probs=160.0

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-C---CCeEEEEeCCCCcccccccCCCCcccccc
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ  196 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~  196 (362)
                      +.+..|||.+++|..+.+++.++...++++..+    +|+++||.. .   ...+++||+.+++|...+  .|..    .
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a--~M~~----~  370 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNG----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA--PMNT----K  370 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEECC----EEEEEccccCCCcccceEEEecCCCCceeccC--CccC----c
Confidence            578899999999999999998887666665544    899999876 2   349999999999999988  6765    4


Q ss_pred             CCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005          197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN  271 (362)
Q Consensus       197 ~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~  271 (362)
                      +.....+.++|.+|++||..     .++..||+.+++|+.+. |       |+..+..+.+++   .+|+||++||....
T Consensus       371 R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-~-------m~~~r~~~gv~~---~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  371 RSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-P-------MLTRRSGHGVAV---LGGKLYIIGGGDGS  439 (571)
T ss_pred             cccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC-C-------CCcceeeeEEEE---ECCEEEEEcCcCCC
Confidence            45677889999999999743     46999999999999974 5       666666677764   99999999997654


Q ss_pred             C-ccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC-----eEEEEECCCCceEE
Q 018005          272 G-ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP-----EILYYNVARRTWHW  344 (362)
Q Consensus       272 ~-~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~v~~yd~~~~~w~~  344 (362)
                      . ....++.|  |+.. .|+.+.+|+..            +....++..++.||+.++..+     .++.||+++++|..
T Consensus       440 ~~~l~sve~Y--DP~t~~W~~~~~M~~~------------R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~  505 (571)
T KOG4441|consen  440 SNCLNSVECY--DPETNTWTLIAPMNTR------------RSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTM  505 (571)
T ss_pred             ccccceEEEE--cCCCCceeecCCcccc------------cccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeE
Confidence            4 45788888  5554 59999999631            223345577889999876433     48999999999999


Q ss_pred             cCCCCCCCCCCCcc
Q 018005          345 LPSCPSLPHKWSCG  358 (362)
Q Consensus       345 ~~~~~~~~~~~~~~  358 (362)
                      ++.++...+...|+
T Consensus       506 v~~m~~~rs~~g~~  519 (571)
T KOG4441|consen  506 VAPMTSPRSAVGVV  519 (571)
T ss_pred             cccCccccccccEE
Confidence            98888887776654

>PHA02713 hypothetical protein; Provisional

Probab=99.83  E-value=4e-19  Score=171.00  Aligned_cols=201  Identities=14%  Similarity=0.159  Sum_probs=147.9

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-C---CCeEEEEeCCCCcccccccCCCCcccccc
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-F---PNYAFVYDSTDQSWSKFDIDGFPSMILSQ  196 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~  196 (362)
                      ..+..|||.+++|..+++++.++...+.+...+    +|+++||.. .   ...+++||+.++.|+..+  .||.    .
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~----~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--~m~~----~  341 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDN----EIIIAGGYNFNNPSLNKVYKINIENKIHVELP--PMIK----N  341 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECC----EEEEEcCCCCCCCccceEEEEECCCCeEeeCC--CCcc----h
Confidence            357889999999999999987765444433332    789998853 1   347999999999999888  6765    3


Q ss_pred             CCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005          197 SSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN  271 (362)
Q Consensus       197 ~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~  271 (362)
                      +.....+.++|++|++||..     .++.+||+.+++|+.+. |       ||..+....+++   ++|+||++||....
T Consensus       342 R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~-------mp~~r~~~~~~~---~~g~IYviGG~~~~  410 (557)
T PHA02713        342 RCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-D-------MPIALSSYGMCV---LDQYIYIIGGRTEH  410 (557)
T ss_pred             hhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC-C-------CCcccccccEEE---ECCEEEEEeCCCcc
Confidence            34567889999999999842     46899999999999864 5       777776666664   89999999986421


Q ss_pred             C------------------ccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC---
Q 018005          272 G------------------ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---  329 (362)
Q Consensus       272 ~------------------~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  329 (362)
                      .                  ....+++|  |... .|+.+..|+...            ....++..+|.||+.++..   
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~ve~Y--DP~td~W~~v~~m~~~r------------~~~~~~~~~~~IYv~GG~~~~~  476 (557)
T PHA02713        411 IDYTSVHHMNSIDMEEDTHSSNKVIRY--DTVNNIWETLPNFWTGT------------IRPGVVSHKDDIYVVCDIKDEK  476 (557)
T ss_pred             cccccccccccccccccccccceEEEE--CCCCCeEeecCCCCccc------------ccCcEEEECCEEEEEeCCCCCC
Confidence            1                  12456666  5554 599999886321            1223456778899987542   


Q ss_pred             ---CeEEEEECCC-CceEEcCCCCCCCCCCC
Q 018005          330 ---PEILYYNVAR-RTWHWLPSCPSLPHKWS  356 (362)
Q Consensus       330 ---~~v~~yd~~~-~~w~~~~~~~~~~~~~~  356 (362)
                         ..+++||+++ ++|+.++.+|.......
T Consensus       477 ~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~  507 (557)
T PHA02713        477 NVKTCIFRYNTNTYNGWELITTTESRLSALH  507 (557)
T ss_pred             ccceeEEEecCCCCCCeeEccccCcccccce
Confidence               2478999999 89999999998655443

>PHA03098 kelch-like protein; Provisional

Probab=99.83  E-value=1.5e-18  Score=168.03  Aligned_cols=240  Identities=14%  Similarity=0.084  Sum_probs=164.6

Q ss_pred             eeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCCCCccceEEEEe
Q 018005           79 PLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVS  152 (362)
Q Consensus        79 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~  152 (362)
                      ..|++...+|..++.   .+. ......+..++.+++.++..      ..++.|||.|++|..+|+++.++...+.+...
T Consensus       267 ~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~  342 (534)
T PHA03098        267 ITNYSPLSEINTIID---IHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN  342 (534)
T ss_pred             eecchhhhhcccccC---ccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEEC
Confidence            346666777776641   111 11223445566666666521      36899999999999999988776655544332


Q ss_pred             CCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC------cEEEEEE
Q 018005          153 TPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIVRFD  223 (362)
Q Consensus       153 ~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~~i~~~D  223 (362)
                      .    +++++||...   ...+++||+.+++|+..+  .+|.    .+..+..+.++|++|.+|+..      ..+.+||
T Consensus       343 ~----~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~lp~----~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd  412 (534)
T PHA03098        343 N----RIYVIGGIYNSISLNTVESWKPGESKWREEP--PLIF----PRYNPCVVNVNNLIYVIGGISKNDELLKTVECFS  412 (534)
T ss_pred             C----EEEEEeCCCCCEecceEEEEcCCCCceeeCC--CcCc----CCccceEEEECCEEEEECCcCCCCcccceEEEEe
Confidence            2    7888888642   347999999999999988  6665    235667788999999998731      4689999


Q ss_pred             cCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCc---cceEEEEEECCCC-CEEEEecccHHHH
Q 018005          224 LENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI---STTMKLWELGCGG-NWIEVERVPEMMC  299 (362)
Q Consensus       224 ~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~---~~~i~vw~l~~~~-~W~~v~~~p~~~~  299 (362)
                      +.+++|+.+. |       +|..+..+..+.   .+|+||++||......   ...  +|.+|... +|+++..+|... 
T Consensus       413 ~~t~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~--v~~yd~~~~~W~~~~~~~~~r-  478 (534)
T PHA03098        413 LNTNKWSKGS-P-------LPISHYGGCAIY---HDGKIYVIGGISYIDNIKVYNI--VESYNPVTNKWTELSSLNFPR-  478 (534)
T ss_pred             CCCCeeeecC-C-------CCccccCceEEE---ECCEEEEECCccCCCCCcccce--EEEecCCCCceeeCCCCCccc-
Confidence            9999999864 4       666555555553   8999999998643221   223  45556554 499998775321 


Q ss_pred             HHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          300 RKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                                 ....++..++.||+.++.     ...+.+||+++++|+.++..|.....+.|
T Consensus       479 -----------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~  530 (534)
T PHA03098        479 -----------INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSLEK  530 (534)
T ss_pred             -----------ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccceee
Confidence                       112223447888888753     24689999999999999988876555544

>PHA02790 Kelch-like protein; Provisional

Probab=99.83  E-value=1.2e-18  Score=165.27  Aligned_cols=196  Identities=9%  Similarity=0.063  Sum_probs=144.5

Q ss_pred             cCCceEEEecCCC-----CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccc
Q 018005          108 SSKGLLCFSLPSS-----SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS  182 (362)
Q Consensus       108 s~~Gll~~~~~~~-----~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~  182 (362)
                      ..++.+++.++..     ..+..|||.+++|..+|+++.++...+.+...    .+|+++||......++.||+.+++|.
T Consensus       269 ~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~----~~iYviGG~~~~~sve~ydp~~n~W~  344 (480)
T PHA02790        269 HVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPAN----NKLYVVGGLPNPTSVERWFHGDAAWV  344 (480)
T ss_pred             EECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEEC----CEEEEECCcCCCCceEEEECCCCeEE
Confidence            3566676666532     36788999999999999998777554443322    28999998755567999999999999


Q ss_pred             ccccCCCCccccccCCCcccEEECCEEEEEecCC---cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCC
Q 018005          183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP---FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEES  259 (362)
Q Consensus       183 ~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~---~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~  259 (362)
                      ..+  .||.    .+..+.++.++|++|++|+..   ..+.+||+.+++|+.++ |       +|..+.....++   .+
T Consensus       345 ~~~--~l~~----~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~-~-------m~~~r~~~~~~~---~~  407 (480)
T PHA02790        345 NMP--SLLK----PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGP-S-------TYYPHYKSCALV---FG  407 (480)
T ss_pred             ECC--CCCC----CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCC-C-------CCCccccceEEE---EC
Confidence            988  6765    234567889999999998742   45889999999999863 4       555555555553   89


Q ss_pred             CeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC-----CeEEE
Q 018005          260 NKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILY  334 (362)
Q Consensus       260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~  334 (362)
                      |+||++|+.        .++|.. +.+.|+.+..|+...            ....++..+|.||+.++..     ..+++
T Consensus       408 ~~IYv~GG~--------~e~ydp-~~~~W~~~~~m~~~r------------~~~~~~v~~~~IYviGG~~~~~~~~~ve~  466 (480)
T PHA02790        408 RRLFLVGRN--------AEFYCE-SSNTWTLIDDPIYPR------------DNPELIIVDNKLLLIGGFYRGSYIDTIEV  466 (480)
T ss_pred             CEEEEECCc--------eEEecC-CCCcEeEcCCCCCCc------------cccEEEEECCEEEEECCcCCCcccceEEE
Confidence            999999862        467755 345699998886311            2234456788999987632     46899


Q ss_pred             EECCCCceEEc
Q 018005          335 YNVARRTWHWL  345 (362)
Q Consensus       335 yd~~~~~w~~~  345 (362)
                      ||+++++|+.-
T Consensus       467 Yd~~~~~W~~~  477 (480)
T PHA02790        467 YNNRTYSWNIW  477 (480)
T ss_pred             EECCCCeEEec
Confidence            99999999753

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.81  E-value=6e-18  Score=154.82  Aligned_cols=223  Identities=17%  Similarity=0.231  Sum_probs=148.1

Q ss_pred             EEecCCceEEEecCC-CCeEEEEeC--CcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC---------CCeE
Q 018005          105 LLSSSKGLLCFSLPS-SSSFLVCNL--VTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA  171 (362)
Q Consensus       105 ~~~s~~Gll~~~~~~-~~~~~v~NP--~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~---------~~~~  171 (362)
                      ..++.++-|++.++. ...++++|+  .+++|..+|+++. ++...+++....    +|+++||...         ...+
T Consensus        12 ~~~~~~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~----~iYv~GG~~~~~~~~~~~~~~~v   87 (346)
T TIGR03547        12 TGAIIGDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDG----KLYVFGGIGKANSEGSPQVFDDV   87 (346)
T ss_pred             eEEEECCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECC----EEEEEeCCCCCCCCCcceecccE
Confidence            455567778877653 357888885  6788999999874 554444443332    8999988531         2479


Q ss_pred             EEEeCCCCcccccccCCCCccccccCCCcccE-EECCEEEEEecCC----------------------------------
Q 018005          172 FVYDSTDQSWSKFDIDGFPSMILSQSSHQEGV-FYKGSLYFTTPEP----------------------------------  216 (362)
Q Consensus       172 ~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v-~~~G~ly~~~~~~----------------------------------  216 (362)
                      ++||+.+++|+..+. .+|.    .+..+.++ .++|+||++++..                                  
T Consensus        88 ~~Yd~~~~~W~~~~~-~~p~----~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (346)
T TIGR03547        88 YRYDPKKNSWQKLDT-RSPV----GLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE  162 (346)
T ss_pred             EEEECCCCEEecCCC-CCCC----cccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence            999999999998861 1222    12223334 6899999998742                                  


Q ss_pred             -----cEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEEEeecCC-ccceEEEEEECCCC-CE
Q 018005          217 -----FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGG-NW  288 (362)
Q Consensus       217 -----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~~~~~~~-~~~~i~vw~l~~~~-~W  288 (362)
                           ..+.+||+.+++|+.+. +       +|. .+....+++   .+|+||++++..... ....+.+++++.+. .|
T Consensus       163 ~~~~~~~v~~YDp~t~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W  231 (346)
T TIGR03547       163 DYFWNKNVLSYDPSTNQWRNLG-E-------NPFLGTAGSAIVH---KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEW  231 (346)
T ss_pred             HcCccceEEEEECCCCceeECc-c-------CCCCcCCCceEEE---ECCEEEEEeeeeCCCccchheEEEEecCCCcee
Confidence                 46899999999999864 4       664 344555663   899999999964322 12334556665554 49


Q ss_pred             EEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEEcC
Q 018005          289 IEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWLP  346 (362)
Q Consensus       289 ~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~~~  346 (362)
                      +++..||..... ..    .......++..++.||+.++..                      ..+.+||+++++|+.++
T Consensus       232 ~~~~~m~~~r~~-~~----~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  306 (346)
T TIGR03547       232 NKLPPLPPPKSS-SQ----EGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG  306 (346)
T ss_pred             eecCCCCCCCCC-cc----ccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence            999988642110 00    0011222445678899886531                      14789999999999999


Q ss_pred             CCCCCC
Q 018005          347 SCPSLP  352 (362)
Q Consensus       347 ~~~~~~  352 (362)
                      .+|.+.
T Consensus       307 ~lp~~~  312 (346)
T TIGR03547       307 KLPQGL  312 (346)
T ss_pred             CCCCCc
Confidence            988754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=99.81  E-value=2.4e-17  Score=150.42  Aligned_cols=241  Identities=12%  Similarity=0.122  Sum_probs=151.8

Q ss_pred             CCCCeEeecCCc-CCCCCCceEEEecCCceEEEecCC-------CCeEEEEeCCcCceeeccCCCC-CCc-cceEEEEeC
Q 018005           84 THGTWRRLSLPY-SLLLPSAATLLSSSKGLLCFSLPS-------SSSFLVCNLVTLSSRTIDFPTY-PFD-FELLTLVST  153 (362)
Q Consensus        84 ~~~~w~~~~~~~-~~~~~~~~~~~~s~~Gll~~~~~~-------~~~~~v~NP~t~~w~~lP~~~~-~~~-~~~~~~~~~  153 (362)
                      ...+|..+.... ..|.++....+++.++.|++.++.       .+.+++||+.+++|..++++.. ++. ...++++..
T Consensus         5 ~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~   84 (341)
T PLN02153          5 LQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV   84 (341)
T ss_pred             cCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE
Confidence            556788875421 134445444556667878877653       1368999999999999987642 332 222222211


Q ss_pred             CCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccc-cCCCcccEEECCEEEEEecCC-----------cE
Q 018005          154 PSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILS-QSSHQEGVFYKGSLYFTTPEP-----------FS  218 (362)
Q Consensus       154 ~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~-~~~~~~~v~~~G~ly~~~~~~-----------~~  218 (362)
                        .-+|+++||...   ...+++||+.+++|+..+  .++....+ .+..+..+.++|++|++++..           ..
T Consensus        85 --~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  160 (341)
T PLN02153         85 --GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLT--KLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRT  160 (341)
T ss_pred             --CCEEEEECCCCCCCccCcEEEEECCCCEEEEec--cCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccce
Confidence              127899888532   247999999999999876  44210001 234566788899999998732           25


Q ss_pred             EEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC--------CccceEEEEEECCCCCEEE
Q 018005          219 IVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN--------GISTTMKLWELGCGGNWIE  290 (362)
Q Consensus       219 i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~--------~~~~~i~vw~l~~~~~W~~  290 (362)
                      +.+||+++++|..+..+..     .|..+..+.+++   .+|+||++++....        .....+++|++ +.++|++
T Consensus       161 v~~yd~~~~~W~~l~~~~~-----~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~-~~~~W~~  231 (341)
T PLN02153        161 IEAYNIADGKWVQLPDPGE-----NFEKRGGAGFAV---VQGKIWVVYGFATSILPGGKSDYESNAVQFFDP-ASGKWTE  231 (341)
T ss_pred             EEEEECCCCeEeeCCCCCC-----CCCCCCcceEEE---ECCeEEEEeccccccccCCccceecCceEEEEc-CCCcEEe
Confidence            8899999999998642210     223344455553   89999999875311        01234555544 2345999


Q ss_pred             EecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEEcC
Q 018005          291 VERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLP  346 (362)
Q Consensus       291 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~~~  346 (362)
                      +..++..      .   ..+....++..++.||+.++..              +.+++||+++++|+.+.
T Consensus       232 ~~~~g~~------P---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        232 VETTGAK------P---SARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             ccccCCC------C---CCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence            8754210      0   0112233455678888887631              26899999999999985

>PHA02790 Kelch-like protein; Provisional

Probab=99.79  E-value=1.3e-17  Score=158.41  Aligned_cols=187  Identities=11%  Similarity=0.045  Sum_probs=139.3

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC--CCeEEEEeCCcCceeeccCCCCCCccceEEEEeC
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS--SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVST  153 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~--~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~  153 (362)
                      ..+..|||..++|..++   +++.++....+++.+|.||+.++.  ...+..|||.+++|..+|+++.++...+.+....
T Consensus       287 ~~v~~Ydp~~~~W~~~~---~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g  363 (480)
T PHA02790        287 NNAIAVNYISNNWIPIP---PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINN  363 (480)
T ss_pred             CeEEEEECCCCEEEECC---CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECC
Confidence            35678999999999986   333444444566788988888763  2468899999999999999988776554443332


Q ss_pred             CCceEEEEEeeecC-CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecC
Q 018005          154 PSGYKIFMLFAKSF-PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP  232 (362)
Q Consensus       154 ~~~ykv~~~~~~~~-~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~  232 (362)
                          +|+++||... ...+++||+++++|+..+  .|+.    .+..+.++.++|++|++|+.   ..+||+++++|+.+
T Consensus       364 ----~IYviGG~~~~~~~ve~ydp~~~~W~~~~--~m~~----~r~~~~~~~~~~~IYv~GG~---~e~ydp~~~~W~~~  430 (480)
T PHA02790        364 ----VIYVIGGHSETDTTTEYLLPNHDQWQFGP--STYY----PHYKSCALVFGRRLFLVGRN---AEFYCESSNTWTLI  430 (480)
T ss_pred             ----EEEEecCcCCCCccEEEEeCCCCEEEeCC--CCCC----ccccceEEEECCEEEEECCc---eEEecCCCCcEeEc
Confidence                8999988643 357899999999999988  6654    22445677899999999864   67899999999986


Q ss_pred             CCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEE
Q 018005          233 NDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIE  290 (362)
Q Consensus       233 ~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~  290 (362)
                      . |       ||..+....+++   .+|+||++||.........+++|+. +.+.|+.
T Consensus       431 ~-~-------m~~~r~~~~~~v---~~~~IYviGG~~~~~~~~~ve~Yd~-~~~~W~~  476 (480)
T PHA02790        431 D-D-------PIYPRDNPELII---VDNKLLLIGGFYRGSYIDTIEVYNN-RTYSWNI  476 (480)
T ss_pred             C-C-------CCCCccccEEEE---ECCEEEEECCcCCCcccceEEEEEC-CCCeEEe
Confidence            3 5       666566666664   8999999999653333467888855 3455874

>PLN02193 nitrile-specifier protein

Probab=99.78  E-value=1.7e-16  Score=150.22  Aligned_cols=247  Identities=11%  Similarity=0.051  Sum_probs=157.5

Q ss_pred             eeeeeCCC----CCeEeecCCcCCCCCCceEEEecCCceEEEecCCC-------CeEEEEeCCcCceeeccCCC-CCC-c
Q 018005           78 YPLYDSTH----GTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS-------SSFLVCNLVTLSSRTIDFPT-YPF-D  144 (362)
Q Consensus        78 ~~~~d~~~----~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~-------~~~~v~NP~t~~w~~lP~~~-~~~-~  144 (362)
                      ++.+++..    ++|..++.....|.++....++..++.|++.++..       ..+++||+.+++|..++++. .+. .
T Consensus       139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~  218 (470)
T PLN02193        139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS  218 (470)
T ss_pred             EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence            34447644    78998864323344555555556667777766521       35889999999999887652 222 1


Q ss_pred             cceEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC-----
Q 018005          145 FELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-----  216 (362)
Q Consensus       145 ~~~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~-----  216 (362)
                      +..++++..  .-++++++|...   ...+++||+.+++|+..+  .++..+. .+..+..+.+++++|++++..     
T Consensus       219 ~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~--~~~~~P~-~R~~h~~~~~~~~iYv~GG~~~~~~~  293 (470)
T PLN02193        219 CLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLT--PVEEGPT-PRSFHSMAADEENVYVFGGVSATARL  293 (470)
T ss_pred             ccceEEEEE--CCEEEEECCCCCCCCCccEEEEECCCCEEEEcC--cCCCCCC-CccceEEEEECCEEEEECCCCCCCCc
Confidence            222222211  127888887542   348999999999999887  4522111 335567788899999998742     


Q ss_pred             cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEeccc
Q 018005          217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVP  295 (362)
Q Consensus       217 ~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p  295 (362)
                      ..+.+||+.+++|+.+..|..     +|..+..+.+++   .+|+||++++..+. ....+.+|  |... +|+++..++
T Consensus       294 ~~~~~yd~~t~~W~~~~~~~~-----~~~~R~~~~~~~---~~gkiyviGG~~g~-~~~dv~~y--D~~t~~W~~~~~~g  362 (470)
T PLN02193        294 KTLDSYNIVDKKWFHCSTPGD-----SFSIRGGAGLEV---VQGKVWVVYGFNGC-EVDDVHYY--DPVQDKWTQVETFG  362 (470)
T ss_pred             ceEEEEECCCCEEEeCCCCCC-----CCCCCCCcEEEE---ECCcEEEEECCCCC-ccCceEEE--ECCCCEEEEeccCC
Confidence            458999999999998754311     334444555653   89999999985422 12444444  5444 499997653


Q ss_pred             HHHHHHhhhccccCCccEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEEcCCCC
Q 018005          296 EMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLPSCP  349 (362)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~~~~~~  349 (362)
                      ...         ..+....++..++.||+.++..              +.+++||+.+++|+.++.++
T Consensus       363 ~~P---------~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~  421 (470)
T PLN02193        363 VRP---------SERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG  421 (470)
T ss_pred             CCC---------CCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence            111         0112234455678888886532              24899999999999997654

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.76  E-value=1.3e-16  Score=147.27  Aligned_cols=226  Identities=16%  Similarity=0.210  Sum_probs=145.2

Q ss_pred             EEecCCceEEEecC-CCCeEEEEeCC--cCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC---------CCeE
Q 018005          105 LLSSSKGLLCFSLP-SSSSFLVCNLV--TLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYA  171 (362)
Q Consensus       105 ~~~s~~Gll~~~~~-~~~~~~v~NP~--t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~---------~~~~  171 (362)
                      ..++.++-|++.++ ....++++|+.  +++|..+++++. ++.....+....    +|+++||...         ...+
T Consensus        33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~----~IYV~GG~~~~~~~~~~~~~~~v  108 (376)
T PRK14131         33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDG----KLYVFGGIGKTNSEGSPQVFDDV  108 (376)
T ss_pred             eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECC----EEEEEcCCCCCCCCCceeEcccE
Confidence            45556777777554 34567888876  578999998764 443333332222    7888887532         2479


Q ss_pred             EEEeCCCCcccccccCCC-CccccccCCCcccEE-ECCEEEEEecCC---------------------------------
Q 018005          172 FVYDSTDQSWSKFDIDGF-PSMILSQSSHQEGVF-YKGSLYFTTPEP---------------------------------  216 (362)
Q Consensus       172 ~vy~s~~~~W~~~~~~~~-p~~~~~~~~~~~~v~-~~G~ly~~~~~~---------------------------------  216 (362)
                      ++||+.+++|+..+  .. |.    .+..+..+. .+|+||++++..                                 
T Consensus       109 ~~YD~~~n~W~~~~--~~~p~----~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~  182 (376)
T PRK14131        109 YKYDPKTNSWQKLD--TRSPV----GLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP  182 (376)
T ss_pred             EEEeCCCCEEEeCC--CCCCC----cccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence            99999999999987  32 22    112344444 799999998742                                 


Q ss_pred             ------cEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEEEeecCC-ccceEEEEEECCCC-C
Q 018005          217 ------FSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGG-N  287 (362)
Q Consensus       217 ------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~~~~~~~-~~~~i~vw~l~~~~-~  287 (362)
                            ..+.+||+.+++|+.+. +       +|. .+..+.++.   .+++||++++....+ ....+..++++... .
T Consensus       183 ~~~~~~~~v~~YD~~t~~W~~~~-~-------~p~~~~~~~a~v~---~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~  251 (376)
T PRK14131        183 EDYFFNKEVLSYDPSTNQWKNAG-E-------SPFLGTAGSAVVI---KGNKLWLINGEIKPGLRTDAVKQGKFTGNNLK  251 (376)
T ss_pred             hhcCcCceEEEEECCCCeeeECC-c-------CCCCCCCcceEEE---ECCEEEEEeeeECCCcCChhheEEEecCCCcc
Confidence                  35899999999999864 4       554 444556663   899999999964322 12233444555444 4


Q ss_pred             EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------------------CeEEEEECCCCceEEc
Q 018005          288 WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARRTWHWL  345 (362)
Q Consensus       288 W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~~w~~~  345 (362)
                      |+++..||........    .......++..++.||+.++..                      ..+.+||+++++|+.+
T Consensus       252 W~~~~~~p~~~~~~~~----~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~  327 (376)
T PRK14131        252 WQKLPDLPPAPGGSSQ----EGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKV  327 (376)
T ss_pred             eeecCCCCCCCcCCcC----CccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCccccc
Confidence            9999988743210000    0001122334577888876531                      1357899999999999


Q ss_pred             CCCCCCCCCC
Q 018005          346 PSCPSLPHKW  355 (362)
Q Consensus       346 ~~~~~~~~~~  355 (362)
                      +.+|.+..-.
T Consensus       328 ~~lp~~r~~~  337 (376)
T PRK14131        328 GELPQGLAYG  337 (376)
T ss_pred             CcCCCCccce
Confidence            9888765433

>PLN02153 epithiospecifier protein

Probab=99.73  E-value=1.7e-15  Score=138.22  Aligned_cols=203  Identities=11%  Similarity=0.108  Sum_probs=133.3

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCC-CceEEEecCCceEEEecCC-----CCeEEEEeCCcCceeeccCC-----CCCCc
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLP-SAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFP-----TYPFD  144 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~-~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~w~~lP~~-----~~~~~  144 (362)
                      ..++.||+..++|..++.....|.. .....+++.++.|++.++.     ...+++|||.|++|..++++     +.++.
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~  129 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEART  129 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCce
Confidence            3578899999999987532112221 1234456677877777652     14789999999999999876     33343


Q ss_pred             cceEEEEeCCCceEEEEEeeecC---------CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC
Q 018005          145 FELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE  215 (362)
Q Consensus       145 ~~~~~~~~~~~~ykv~~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~  215 (362)
                      .+.++....    +++++||...         ...+++||+++++|+..+  .+.. ....+..+..+.++|++|++++.
T Consensus       130 ~~~~~~~~~----~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~--~~~~-~~~~r~~~~~~~~~~~iyv~GG~  202 (341)
T PLN02153        130 FHSMASDEN----HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP--DPGE-NFEKRGGAGFAVVQGKIWVVYGF  202 (341)
T ss_pred             eeEEEEECC----EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC--CCCC-CCCCCCcceEEEECCeEEEEecc
Confidence            333332222    7888888531         136899999999999887  4332 11233456678899999998652


Q ss_pred             -------------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCC-------ccc
Q 018005          216 -------------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-------IST  275 (362)
Q Consensus       216 -------------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~-------~~~  275 (362)
                                   ...+.+||+.+++|+.+.....     +|..+..+..++   .+++||++||.....       ...
T Consensus       203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~-----~P~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~  274 (341)
T PLN02153        203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA-----KPSARSVFAHAV---VGKYIIIFGGEVWPDLKGHLGPGTL  274 (341)
T ss_pred             ccccccCCccceecCceEEEEcCCCcEEeccccCC-----CCCCcceeeeEE---ECCEEEEECcccCCccccccccccc
Confidence                         1468999999999998742110     455555555553   899999999953110       111


Q ss_pred             eEEEEEECCCCC-EEEEec
Q 018005          276 TMKLWELGCGGN-WIEVER  293 (362)
Q Consensus       276 ~i~vw~l~~~~~-W~~v~~  293 (362)
                      .-++|.+|.... |+++..
T Consensus       275 ~n~v~~~d~~~~~W~~~~~  293 (341)
T PLN02153        275 SNEGYALDTETLVWEKLGE  293 (341)
T ss_pred             cccEEEEEcCccEEEeccC
Confidence            236777776655 998864

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.73  E-value=1.3e-15  Score=137.90  Aligned_cols=199  Identities=14%  Similarity=0.150  Sum_probs=128.9

Q ss_pred             eEEEEe-CCcC-ceeeccCCCCCCccceEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcc----cccccCCCCcc
Q 018005          122 SFLVCN-LVTL-SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSW----SKFDIDGFPSM  192 (362)
Q Consensus       122 ~~~v~N-P~t~-~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W----~~~~~~~~p~~  192 (362)
                      .+++++ +..+ +|..+++++.++...+.+....    +|+++||...   ...++.||..++.|    +..+  .+|. 
T Consensus        40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~----~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~-  112 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVEN----GIYYIGGSNSSERFSSVYRITLDESKEELICETIG--NLPF-  112 (323)
T ss_pred             eeEEEecCCCceeEEEcccCCccccceEEEEECC----EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcC--CCCc-
Confidence            456664 4433 7999998887765444333222    7888887542   24899999999988    4555  5554 


Q ss_pred             ccccCCCcccEEECCEEEEEecC-----CcEEEEEEcCCCeeecCCCCCcccccCCCC-cccccceeecccCCCeEEEEE
Q 018005          193 ILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPH-ELTFFRLVNDGEESNKLYLIG  266 (362)
Q Consensus       193 ~~~~~~~~~~v~~~G~ly~~~~~-----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~-~~~~~~lv~~~~~~G~L~vv~  266 (362)
                         .+..+.+++++|++|++++.     ...+.+||+.+++|+.+. +       +|. .+..+.+++   .+|+||++|
T Consensus       113 ---~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~-~-------~p~~~r~~~~~~~---~~~~iYv~G  178 (323)
T TIGR03548       113 ---TFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELP-D-------FPGEPRVQPVCVK---LQNELYVFG  178 (323)
T ss_pred             ---CccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECC-C-------CCCCCCCcceEEE---ECCEEEEEc
Confidence               22456678889999999874     246899999999999864 3       443 334444543   899999999


Q ss_pred             EeecCCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------------
Q 018005          267 GVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------  329 (362)
Q Consensus       267 ~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------  329 (362)
                      +.... ....+  +.+|... +|+++..|+...    .+..  ......++..++.||+.++..                
T Consensus       179 G~~~~-~~~~~--~~yd~~~~~W~~~~~~~~~~----~p~~--~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~  249 (323)
T TIGR03548       179 GGSNI-AYTDG--YKYSPKKNQWQKVADPTTDS----EPIS--LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKD  249 (323)
T ss_pred             CCCCc-cccce--EEEecCCCeeEECCCCCCCC----Ccee--ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccc
Confidence            85321 11234  4445444 599988763210    0000  001112234467788876532                


Q ss_pred             ---------------------CeEEEEECCCCceEEcCCCCC
Q 018005          330 ---------------------PEILYYNVARRTWHWLPSCPS  350 (362)
Q Consensus       330 ---------------------~~v~~yd~~~~~w~~~~~~~~  350 (362)
                                           +.+++||+++++|+.++.+|.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~  291 (323)
T TIGR03548       250 ESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF  291 (323)
T ss_pred             hhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccc
Confidence                                 469999999999999988774

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA03098 kelch-like protein; Provisional

Probab=99.72  E-value=4.3e-16  Score=150.82  Aligned_cols=195  Identities=13%  Similarity=0.176  Sum_probs=140.8

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC-----CeEEEEeCCcCceeeccCCCCCCccceEEEE
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS-----SSFLVCNLVTLSSRTIDFPTYPFDFELLTLV  151 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~-----~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~  151 (362)
                      .+..||+..++|..++   +++.++....+++.+|-|++.++..     ..+.+|||.|++|..+++++.++...+.+..
T Consensus       312 ~v~~yd~~~~~W~~~~---~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~  388 (534)
T PHA03098        312 SVVSYDTKTKSWNKVP---ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV  388 (534)
T ss_pred             cEEEEeCCCCeeeECC---CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence            5778999999998875   3333444455666788777776632     4688999999999999999877765544433


Q ss_pred             eCCCceEEEEEeeecC----CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC--------cEE
Q 018005          152 STPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP--------FSI  219 (362)
Q Consensus       152 ~~~~~ykv~~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~--------~~i  219 (362)
                      ..    +|+++||...    ...+++||+.+++|+..+  .+|.    .+..+.++.++|++|.+++..        ..+
T Consensus       389 ~~----~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v  458 (534)
T PHA03098        389 NN----LIYVIGGISKNDELLKTVECFSLNTNKWSKGS--PLPI----SHYGGCAIYHDGKIYVIGGISYIDNIKVYNIV  458 (534)
T ss_pred             CC----EEEEECCcCCCCcccceEEEEeCCCCeeeecC--CCCc----cccCceEEEECCEEEEECCccCCCCCcccceE
Confidence            22    8888888432    248999999999999988  6665    234566788999999998742        248


Q ss_pred             EEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccH
Q 018005          220 VRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPE  296 (362)
Q Consensus       220 ~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~  296 (362)
                      .+||+.+++|+.+. +       +|..+....+++   .+|+||++||.........+++|.. +.+.|+.+..+|.
T Consensus       459 ~~yd~~~~~W~~~~-~-------~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~p~  523 (534)
T PHA03098        459 ESYNPVTNKWTELS-S-------LNFPRINASLCI---FNNKIYVVGGDKYEYYINEIEVYDD-KTNTWTLFCKFPK  523 (534)
T ss_pred             EEecCCCCceeeCC-C-------CCcccccceEEE---ECCEEEEEcCCcCCcccceeEEEeC-CCCEEEecCCCcc
Confidence            99999999999864 3       454444555553   8999999998654333455666644 2345999988763

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.69  E-value=3.5e-15  Score=133.11  Aligned_cols=288  Identities=14%  Similarity=0.114  Sum_probs=154.4

Q ss_pred             hhcCCCHHHHHHHHccCC-hhhhhhhhccchhhhhhccCccccccccccCCCcceEEEEecC-CCCceeeeeeCCCC---
Q 018005           12 IWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHP-QCYDQYPLYDSTHG---   86 (362)
Q Consensus        12 ~~~~LP~dll~~IL~rLp-~~~l~~~r~VcK~W~~~i~~~~F~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~d~~~~---   86 (362)
                      .|++||+|||..|..||| ..++.|+|+|||+||+.+....   +.. ..++.++.++.... ..+  ....|+...   
T Consensus         3 ~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~---~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   76 (373)
T PLN03215          3 DWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG---KKN-PFRTRPLILFNPINPSET--LTDDRSYISRPG   76 (373)
T ss_pred             ChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc---ccC-CcccccccccCcccCCCC--cccccccccccc
Confidence            599999999999999996 7899999999999999886421   000 00111222221100 000  000111000   


Q ss_pred             ------CeEeecCCcCCCCCCceEEEecCCceEEEecC--CCCeEEEEeCCcCceeeccCCCCC---Cc-----c-ceE-
Q 018005           87 ------TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP--SSSSFLVCNLVTLSSRTIDFPTYP---FD-----F-ELL-  148 (362)
Q Consensus        87 ------~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~--~~~~~~v~NP~t~~w~~lP~~~~~---~~-----~-~~~-  148 (362)
                            ...+++++           -++..|+|.....  ..+.+.+.||+++.-..+|+...+   ..     . +.+ 
T Consensus        77 ~~ls~~~~~r~~~~-----------~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~  145 (373)
T PLN03215         77 AFLSRAAFFRVTLS-----------SSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL  145 (373)
T ss_pred             ceeeeeEEEEeecC-----------CCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence                  01111100           0245676554432  346888999999996666642111   00     0 000 


Q ss_pred             EEE-----------------e--CCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEE
Q 018005          149 TLV-----------------S--TPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSL  209 (362)
Q Consensus       149 ~~~-----------------~--~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~l  209 (362)
                      +..                 .  +...|-|++++..   ..+..++  .+.|+.++  ....      ...+.++++|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~---g~l~~w~--~~~Wt~l~--~~~~------~~~DIi~~kGkf  212 (373)
T PLN03215        146 DWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRD---GKINYWD--GNVLKALK--QMGY------HFSDIIVHKGQT  212 (373)
T ss_pred             ecccccccccceeEEEEEEeecCCCcceEEEEEeec---CcEeeec--CCeeeEcc--CCCc------eeeEEEEECCEE
Confidence            000                 0  0011223333321   2333343  58898886  3222      457789999999


Q ss_pred             EEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCc--ccccceeecccCCCeEEEEEEeecC------------Cccc
Q 018005          210 YFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE--LTFFRLVNDGEESNKLYLIGGVGRN------------GIST  275 (362)
Q Consensus       210 y~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~--~~~~~lv~~~~~~G~L~vv~~~~~~------------~~~~  275 (362)
                      |++...+ .+.++|.+-+ -+.+..+-   ..-+-.+  .....+| |  +.|+|++|......            ..+.
T Consensus       213 YAvD~~G-~l~~i~~~l~-i~~v~~~i---~~~~~~g~~~~~~yLV-E--s~GdLLmV~R~~~~~~~~~~~~~~~~~~t~  284 (373)
T PLN03215        213 YALDSIG-IVYWINSDLE-FSRFGTSL---DENITDGCWTGDRRFV-E--CCGELYIVERLPKESTWKRKADGFEYSRTV  284 (373)
T ss_pred             EEEcCCC-eEEEEecCCc-eeeeccee---cccccCCcccCceeEE-E--ECCEEEEEEEEccCccccccccccccccee
Confidence            9997654 5777774321 11111110   0001111  1235677 6  89999999885321            1235


Q ss_pred             eEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEE------EeeCCEEEEEeecCCeEEEEECCCCceEEc
Q 018005          276 TMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYC------FWHQGMICVCCYTWPEILYYNVARRTWHWL  345 (362)
Q Consensus       276 ~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~  345 (362)
                      .++||++|.... |+++.+++....  +++    ....+.+      -..+|.||+...  ....+||++.++-..+
T Consensus       285 ~f~VfklD~~~~~WveV~sLgd~aL--FlG----~~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~  353 (373)
T PLN03215        285 GFKVYKFDDELAKWMEVKTLGDNAF--VMA----TDTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI  353 (373)
T ss_pred             EEEEEEEcCCCCcEEEecccCCeEE--EEE----CCccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence            789999986654 999999975421  111    0011111      124689999863  3467999999975444

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.69  E-value=1.5e-14  Score=132.43  Aligned_cols=219  Identities=13%  Similarity=0.150  Sum_probs=140.3

Q ss_pred             ceeeeeeC--CCCCeEeecCCcCCC-CCCceEEEecCCceEEEecCCC-----------CeEEEEeCCcCceeeccCCCC
Q 018005           76 DQYPLYDS--THGTWRRLSLPYSLL-LPSAATLLSSSKGLLCFSLPSS-----------SSFLVCNLVTLSSRTIDFPTY  141 (362)
Q Consensus        76 ~~~~~~d~--~~~~w~~~~~~~~~~-~~~~~~~~~s~~Gll~~~~~~~-----------~~~~v~NP~t~~w~~lP~~~~  141 (362)
                      ..++.||+  ..++|..++   ++| ..+....+++.+|-|++.++..           ..+++|||.+++|..++.+ .
T Consensus        29 ~~~~~~d~~~~~~~W~~l~---~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~-~  104 (346)
T TIGR03547        29 TSWYKLDLKKPSKGWQKIA---DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTR-S  104 (346)
T ss_pred             CeeEEEECCCCCCCceECC---CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCC-C
Confidence            45677885  567899886   333 2344455677888888877531           3588999999999999742 2


Q ss_pred             CCccceEEEEeCCCceEEEEEeeecC-------------------------------------CCeEEEEeCCCCccccc
Q 018005          142 PFDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSKF  184 (362)
Q Consensus       142 ~~~~~~~~~~~~~~~ykv~~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~~  184 (362)
                      ++.+.+.+... ...-+|+++||...                                     ...+++||+.+++|+..
T Consensus       105 p~~~~~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~  183 (346)
T TIGR03547       105 PVGLLGASGFS-LHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL  183 (346)
T ss_pred             CCcccceeEEE-EeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence            33332221110 01228899887531                                     15799999999999999


Q ss_pred             ccCCCCccccccCCCcccEEECCEEEEEecCC------cEEEEEEc--CCCeeecCCCCCcccccCCCCcc-------cc
Q 018005          185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FSIVRFDL--ENGIWETPNDANDHMTMMLPHEL-------TF  249 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~~i~~~D~--~~~~w~~~~~p~~~~~~~~p~~~-------~~  249 (362)
                      +  .+|..   .+..+..+.++|+||++++..      ..+..||+  ++++|+.+. +       ||..+       ..
T Consensus       184 ~--~~p~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~-~-------m~~~r~~~~~~~~~  250 (346)
T TIGR03547       184 G--ENPFL---GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLP-P-------LPPPKSSSQEGLAG  250 (346)
T ss_pred             c--cCCCC---cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecC-C-------CCCCCCCccccccE
Confidence            8  66631   124456678899999998741      22445654  667999863 4       44321       12


Q ss_pred             cceeecccCCCeEEEEEEeecCC-----------------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCcc
Q 018005          250 FRLVNDGEESNKLYLIGGVGRNG-----------------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH  312 (362)
Q Consensus       250 ~~lv~~~~~~G~L~vv~~~~~~~-----------------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~  312 (362)
                      +..+ .  .+|+||++|+.....                 ....+++|..+ .++|+.+..||...            ..
T Consensus       251 ~~a~-~--~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~~------------~~  314 (346)
T TIGR03547       251 AFAG-I--SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD-NGKWSKVGKLPQGL------------AY  314 (346)
T ss_pred             Eeee-E--ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec-CCcccccCCCCCCc------------ee
Confidence            2234 2  899999999964110                 01368899884 55699999887321            12


Q ss_pred             EEEEeeCCEEEEEeec
Q 018005          313 VYCFWHQGMICVCCYT  328 (362)
Q Consensus       313 ~~~~~~~~~i~~~~~~  328 (362)
                      ..++..+|.||+.++.
T Consensus       315 ~~~~~~~~~iyv~GG~  330 (346)
T TIGR03547       315 GVSVSWNNGVLLIGGE  330 (346)
T ss_pred             eEEEEcCCEEEEEecc
Confidence            2344668889998754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.68  E-value=4e-14  Score=130.77  Aligned_cols=234  Identities=14%  Similarity=0.129  Sum_probs=149.9

Q ss_pred             ceeeeeeCC--CCCeEeecCCcCCC-CCCceEEEecCCceEEEecCCC-----------CeEEEEeCCcCceeeccCCCC
Q 018005           76 DQYPLYDST--HGTWRRLSLPYSLL-LPSAATLLSSSKGLLCFSLPSS-----------SSFLVCNLVTLSSRTIDFPTY  141 (362)
Q Consensus        76 ~~~~~~d~~--~~~w~~~~~~~~~~-~~~~~~~~~s~~Gll~~~~~~~-----------~~~~v~NP~t~~w~~lP~~~~  141 (362)
                      ..++.||..  .++|..++   ++| .++....+++.+|-|++.++..           ..+++|||.+++|..++++ .
T Consensus        50 ~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~  125 (376)
T PRK14131         50 TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-S  125 (376)
T ss_pred             CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-C
Confidence            346778875  46898875   222 1344445667788888876521           3588999999999999853 2


Q ss_pred             CCccceE-EEEeCCCceEEEEEeeecC-------------------------------------CCeEEEEeCCCCcccc
Q 018005          142 PFDFELL-TLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSK  183 (362)
Q Consensus       142 ~~~~~~~-~~~~~~~~ykv~~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~  183 (362)
                      ++...+. +....  .-+|+++||...                                     ...+++||+.++.|+.
T Consensus       126 p~~~~~~~~~~~~--~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~  203 (376)
T PRK14131        126 PVGLAGHVAVSLH--NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKN  203 (376)
T ss_pred             CCcccceEEEEee--CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeE
Confidence            2222222 22101  228899888531                                     2479999999999998


Q ss_pred             cccCCCCccccccCCCcccEEECCEEEEEecCC------cE--EEEEEcCCCeeecCCCCCcccccCCCCccc-------
Q 018005          184 FDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------FS--IVRFDLENGIWETPNDANDHMTMMLPHELT-------  248 (362)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~~--i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~-------  248 (362)
                      .+  .+|.   ..+..+..+.++++||++++..      ..  ...||+++++|+.+. +       +|..+.       
T Consensus       204 ~~--~~p~---~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~-~-------~p~~~~~~~~~~~  270 (376)
T PRK14131        204 AG--ESPF---LGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLP-D-------LPPAPGGSSQEGV  270 (376)
T ss_pred             CC--cCCC---CCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecC-C-------CCCCCcCCcCCcc
Confidence            87  5653   1224556778899999998731      11  345678899999864 3       443221       


Q ss_pred             -ccceeecccCCCeEEEEEEeecCC-----------------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCC
Q 018005          249 -FFRLVNDGEESNKLYLIGGVGRNG-----------------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNY  310 (362)
Q Consensus       249 -~~~lv~~~~~~G~L~vv~~~~~~~-----------------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~  310 (362)
                       ....+ .  .+|+||++|+.....                 ....+++|.++ .+.|+.+..||...            
T Consensus       271 ~~~~a~-~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~-~~~W~~~~~lp~~r------------  334 (376)
T PRK14131        271 AGAFAG-Y--SNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALV-NGKWQKVGELPQGL------------  334 (376)
T ss_pred             ceEece-e--ECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEec-CCcccccCcCCCCc------------
Confidence             11123 2  799999999854211                 01246788774 45699998887422            


Q ss_pred             ccEEEEeeCCEEEEEeecC------CeEEEEECCCCceEE
Q 018005          311 DHVYCFWHQGMICVCCYTW------PEILYYNVARRTWHW  344 (362)
Q Consensus       311 ~~~~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~  344 (362)
                      ....++..++.||+.++..      ..+.+|+++++++..
T Consensus       335 ~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        335 AYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             cceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            1233556778899987642      258999999988764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.65  E-value=5e-14  Score=127.65  Aligned_cols=221  Identities=14%  Similarity=0.170  Sum_probs=138.0

Q ss_pred             eeeee-CCCC-CeEeecCCcCCCCCCceEEEecCCceEEEecCC-----CCeEEEEeCCcCce----eeccCCCCCCccc
Q 018005           78 YPLYD-STHG-TWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSS----RTIDFPTYPFDFE  146 (362)
Q Consensus        78 ~~~~d-~~~~-~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~w----~~lP~~~~~~~~~  146 (362)
                      ++.++ +..+ +|..++   ++|.++.....++.++-|++.++.     ...++.+|+.+++|    ..+|+++.++...
T Consensus        41 v~~~~~~~~~~~W~~~~---~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~  117 (323)
T TIGR03548        41 IYIAKDENSNLKWVKDG---QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG  117 (323)
T ss_pred             eEEEecCCCceeEEEcc---cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence            44453 3323 687775   333344333445556766666552     24788999999998    7788887776554


Q ss_pred             eEEEEeCCCceEEEEEeeec---CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC----cEE
Q 018005          147 LLTLVSTPSGYKIFMLFAKS---FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----FSI  219 (362)
Q Consensus       147 ~~~~~~~~~~ykv~~~~~~~---~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~----~~i  219 (362)
                      +.++...    +|++++|..   ....+++||+.+++|+..+  .+|..   .+..+..+.++|++|++++..    ..+
T Consensus       118 ~~~~~~~----~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~---~r~~~~~~~~~~~iYv~GG~~~~~~~~~  188 (323)
T TIGR03548       118 SACYKDG----TLYVGGGNRNGKPSNKSYLFNLETQEWFELP--DFPGE---PRVQPVCVKLQNELYVFGGGSNIAYTDG  188 (323)
T ss_pred             eEEEECC----EEEEEeCcCCCccCceEEEEcCCCCCeeECC--CCCCC---CCCcceEEEECCEEEEEcCCCCccccce
Confidence            4443332    888888853   2348999999999999987  66531   234455678899999998742    246


Q ss_pred             EEEEcCCCeeecCCCCCcccccCCCCccc-ccceeecccCCCeEEEEEEeecCC--------------------------
Q 018005          220 VRFDLENGIWETPNDANDHMTMMLPHELT-FFRLVNDGEESNKLYLIGGVGRNG--------------------------  272 (362)
Q Consensus       220 ~~~D~~~~~w~~~~~p~~~~~~~~p~~~~-~~~lv~~~~~~G~L~vv~~~~~~~--------------------------  272 (362)
                      .+||+++++|+.+....   ....|.... ...++.   .+|+||++|+.....                          
T Consensus       189 ~~yd~~~~~W~~~~~~~---~~~~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (323)
T TIGR03548       189 YKYSPKKNQWQKVADPT---TDSEPISLLGAASIKI---NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLK  262 (323)
T ss_pred             EEEecCCCeeEECCCCC---CCCCceeccceeEEEE---CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCC
Confidence            89999999999864210   000233322 233442   689999999964211                          


Q ss_pred             ------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec
Q 018005          273 ------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT  328 (362)
Q Consensus       273 ------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  328 (362)
                            ....+++|+. ..++|+.+..+|..     .      .....++..++.||+.++.
T Consensus       263 ~~~~~~~~~~v~~yd~-~~~~W~~~~~~p~~-----~------r~~~~~~~~~~~iyv~GG~  312 (323)
T TIGR03548       263 PPEWYNWNRKILIYNV-RTGKWKSIGNSPFF-----A------RCGAALLLTGNNIFSINGE  312 (323)
T ss_pred             CccccCcCceEEEEEC-CCCeeeEccccccc-----c------cCchheEEECCEEEEEecc
Confidence                  0135666655 24459999877521     1      1122345667889988753

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02193 nitrile-specifier protein

Probab=99.63  E-value=7.4e-14  Score=132.39  Aligned_cols=203  Identities=14%  Similarity=0.167  Sum_probs=129.1

Q ss_pred             eEEEEeCCc----CceeeccCC---CCCCccceEEEEeCCCceEEEEEeeecC-----CCeEEEEeCCCCcccccccCCC
Q 018005          122 SFLVCNLVT----LSSRTIDFP---TYPFDFELLTLVSTPSGYKIFMLFAKSF-----PNYAFVYDSTDQSWSKFDIDGF  189 (362)
Q Consensus       122 ~~~v~NP~t----~~w~~lP~~---~~~~~~~~~~~~~~~~~ykv~~~~~~~~-----~~~~~vy~s~~~~W~~~~~~~~  189 (362)
                      .+++++|.+    ++|..++++   |.+|..+..+....    +|++++|...     ...+++||+++++|+..+  .+
T Consensus       138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~----~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~--~~  211 (470)
T PLN02193        138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGN----KIYSFGGEFTPNQPIDKHLYVFDLETRTWSISP--AT  211 (470)
T ss_pred             EEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECC----EEEEECCcCCCCCCeeCcEEEEECCCCEEEeCC--CC
Confidence            467778866    789998864   44454444433322    7888887531     136999999999999765  22


Q ss_pred             CccccccCCCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEE
Q 018005          190 PSMILSQSSHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYL  264 (362)
Q Consensus       190 p~~~~~~~~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~v  264 (362)
                      ...+...+..+..+.+++++|++++..     ..+.+||+.+++|+.+. |..    -.|..+..+.+++   .+++||+
T Consensus       212 g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~-~~~----~~P~~R~~h~~~~---~~~~iYv  283 (470)
T PLN02193        212 GDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLT-PVE----EGPTPRSFHSMAA---DEENVYV  283 (470)
T ss_pred             CCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcC-cCC----CCCCCccceEEEE---ECCEEEE
Confidence            110111123456788899999998742     46899999999999864 300    0255555566664   8999999


Q ss_pred             EEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----CeEEEEECCCC
Q 018005          265 IGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----PEILYYNVARR  340 (362)
Q Consensus       265 v~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~v~~yd~~~~  340 (362)
                      +++.........+++|++ ..++|+.+..... .    .    .......++..++.||+..+..    ..+.+||++++
T Consensus       284 ~GG~~~~~~~~~~~~yd~-~t~~W~~~~~~~~-~----~----~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~  353 (470)
T PLN02193        284 FGGVSATARLKTLDSYNI-VDKKWFHCSTPGD-S----F----SIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD  353 (470)
T ss_pred             ECCCCCCCCcceEEEEEC-CCCEEEeCCCCCC-C----C----CCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence            999754333345555544 2345998764210 0    0    0111223334567788765432    46999999999


Q ss_pred             ceEEcCCC
Q 018005          341 TWHWLPSC  348 (362)
Q Consensus       341 ~w~~~~~~  348 (362)
                      +|+.++.+
T Consensus       354 ~W~~~~~~  361 (470)
T PLN02193        354 KWTQVETF  361 (470)
T ss_pred             EEEEeccC
Confidence            99999765

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.49  E-value=4.3e-12  Score=105.40  Aligned_cols=229  Identities=11%  Similarity=0.131  Sum_probs=151.0

Q ss_pred             ceeeeeeCCCCCeEeecCC-------cC---CCCCCceEEEecCCceEEEecCC------CCeEEEEeCCcCceeeccCC
Q 018005           76 DQYPLYDSTHGTWRRLSLP-------YS---LLLPSAATLLSSSKGLLCFSLPS------SSSFLVCNLVTLSSRTIDFP  139 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~-------~~---~~~~~~~~~~~s~~Gll~~~~~~------~~~~~v~NP~t~~w~~lP~~  139 (362)
                      ..+++++...-+|.+++..       .+   .|..+....+....+-+++-++.      .+.++.++|.|.+|.+.-.-
T Consensus        44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~  123 (392)
T KOG4693|consen   44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVE  123 (392)
T ss_pred             ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeecccccccccccee
Confidence            3577888888899887631       01   12223334445556666665542      24689999999999864321


Q ss_pred             ---CCCCccceEEEEeCCCceEEEEEeeec-----CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEE
Q 018005          140 ---TYPFDFELLTLVSTPSGYKIFMLFAKS-----FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYF  211 (362)
Q Consensus       140 ---~~~~~~~~~~~~~~~~~ykv~~~~~~~-----~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~  211 (362)
                         |-.+..+..++-.+    ..+..|+..     .+..++++|..|.+|+...+++.|+ .+  +..+.++.++|.+|.
T Consensus       124 G~vPgaRDGHsAcV~gn----~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp-rw--RDFH~a~~~~~~MYi  196 (392)
T KOG4693|consen  124 GFVPGARDGHSACVWGN----QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP-RW--RDFHTASVIDGMMYI  196 (392)
T ss_pred             eecCCccCCceeeEECc----EEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc-hh--hhhhhhhhccceEEE
Confidence               22222222222222    344455432     3568999999999999998666666 23  356778889999999


Q ss_pred             EecCC--------------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005          212 TTPEP--------------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM  277 (362)
Q Consensus       212 ~~~~~--------------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i  277 (362)
                      .+++.              ..|+++|++++.|...+ +    ..+.|.+++.++..+   ++|++|++|++.+.....--
T Consensus       197 FGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p-~----~~~~P~GRRSHS~fv---Yng~~Y~FGGYng~ln~Hfn  268 (392)
T KOG4693|consen  197 FGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTP-E----NTMKPGGRRSHSTFV---YNGKMYMFGGYNGTLNVHFN  268 (392)
T ss_pred             eccccccCCCccchhhhhcceeEEEeccccccccCC-C----CCcCCCcccccceEE---EcceEEEecccchhhhhhhc
Confidence            98742              46999999999998742 1    123788888888774   99999999998754344556


Q ss_pred             EEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec
Q 018005          278 KLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT  328 (362)
Q Consensus       278 ~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  328 (362)
                      ++|.+|+..+ |..+..-....         ..+..-.++..++.+|+.++.
T Consensus       269 dLy~FdP~t~~W~~I~~~Gk~P---------~aRRRqC~~v~g~kv~LFGGT  311 (392)
T KOG4693|consen  269 DLYCFDPKTSMWSVISVRGKYP---------SARRRQCSVVSGGKVYLFGGT  311 (392)
T ss_pred             ceeecccccchheeeeccCCCC---------CcccceeEEEECCEEEEecCC
Confidence            8999988776 99986542111         122334556678888988754

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.25  E-value=3.5e-10  Score=94.20  Aligned_cols=201  Identities=14%  Similarity=0.228  Sum_probs=132.0

Q ss_pred             CeEEEEeCCcCceeeccCCC------C-----CCccceEEEEeCCCceEEEEEeeecCC----CeEEEEeCCCCcccccc
Q 018005          121 SSFLVCNLVTLSSRTIDFPT------Y-----PFDFELLTLVSTPSGYKIFMLFAKSFP----NYAFVYDSTDQSWSKFD  185 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~------~-----~~~~~~~~~~~~~~~ykv~~~~~~~~~----~~~~vy~s~~~~W~~~~  185 (362)
                      ..+.++|..+-+|.++|+--      .     +..+.+...+.-  .-++++.|+.+..    +.++.||++++.|....
T Consensus        44 iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y--~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~  121 (392)
T KOG4693|consen   44 IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEY--QDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE  121 (392)
T ss_pred             ceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEE--cceEEEEcCccCcccccceeeeeccccccccccc
Confidence            47999999999999999821      1     123333333311  1278888886542    37899999999998876


Q ss_pred             cCC-CCccccccCCCcccEEECCEEEEEecCC-------cEEEEEEcCCCeeecCCCCCcccccCCCCc-ccccceeecc
Q 018005          186 IDG-FPSMILSQSSHQEGVFYKGSLYFTTPEP-------FSIVRFDLENGIWETPNDANDHMTMMLPHE-LTFFRLVNDG  256 (362)
Q Consensus       186 ~~~-~p~~~~~~~~~~~~v~~~G~ly~~~~~~-------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~-~~~~~lv~~~  256 (362)
                      .++ +|.    .+..+.++++++.+|..++-.       ..+.++|+++.+|+.+..-+      -|.. +..+.-+ + 
T Consensus       122 v~G~vPg----aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg------~PprwRDFH~a~-~-  189 (392)
T KOG4693|consen  122 VEGFVPG----ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKG------DPPRWRDFHTAS-V-  189 (392)
T ss_pred             eeeecCC----ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccC------CCchhhhhhhhh-h-
Confidence            322 222    346778888899999988631       35789999999999986554      3443 3444444 3 


Q ss_pred             cCCCeEEEEEEeecCC---------ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEee
Q 018005          257 EESNKLYLIGGVGRNG---------ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY  327 (362)
Q Consensus       257 ~~~G~L~vv~~~~~~~---------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (362)
                       .+|..|++|+..+..         ...+|.+.++ ..+.|.+-..-+  +    ..   ..+.....++-++.+|+.++
T Consensus       190 -~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~-~T~aW~r~p~~~--~----~P---~GRRSHS~fvYng~~Y~FGG  258 (392)
T KOG4693|consen  190 -IDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDL-ATGAWTRTPENT--M----KP---GGRRSHSTFVYNGKMYMFGG  258 (392)
T ss_pred             -ccceEEEeccccccCCCccchhhhhcceeEEEec-cccccccCCCCC--c----CC---CcccccceEEEcceEEEecc
Confidence             899999999965321         2345555544 234598653321  0    00   12233445566778888876


Q ss_pred             cCC-------eEEEEECCCCceEEcC
Q 018005          328 TWP-------EILYYNVARRTWHWLP  346 (362)
Q Consensus       328 ~~~-------~v~~yd~~~~~w~~~~  346 (362)
                      +.+       .+..||+++..|..|.
T Consensus       259 Yng~ln~HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  259 YNGTLNVHFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             cchhhhhhhcceeecccccchheeee
Confidence            533       4899999999999983

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.02  E-value=2.8e-08  Score=94.39  Aligned_cols=204  Identities=19%  Similarity=0.175  Sum_probs=138.0

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCC------CeEEEEeCCcCceeeccCCCC-C--Cccce
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSS------SSFLVCNLVTLSSRTIDFPTY-P--FDFEL  147 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~------~~~~v~NP~t~~w~~lP~~~~-~--~~~~~  147 (362)
                      .++++|..+..|.....-...|.++....+++.+..|++.++..      ..+..+|+.|++|..+.+... +  +..+.
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs  168 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS  168 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence            37888998888876543223334455556666667666666543      389999999999999976544 3  33333


Q ss_pred             EEEEeCCCceEEEEEeeecC----CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC------c
Q 018005          148 LTLVSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP------F  217 (362)
Q Consensus       148 ~~~~~~~~~ykv~~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~------~  217 (362)
                      ++....    ++++.||...    ...+++||.++.+|......+-.+  - .+..+..+.++++++.+++..      .
T Consensus       169 ~~~~g~----~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P--~-pR~gH~~~~~~~~~~v~gG~~~~~~~l~  241 (482)
T KOG0379|consen  169 ATVVGT----KLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP--S-PRYGHAMVVVGNKLLVFGGGDDGDVYLN  241 (482)
T ss_pred             EEEECC----EEEEECCccCcccceeeeeeeccccccceecccCCCCC--C-CCCCceEEEECCeEEEEeccccCCceec
Confidence            333332    7888887542    348999999999999887422211  1 357788999999999987642      3


Q ss_pred             EEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEeccc
Q 018005          218 SIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVP  295 (362)
Q Consensus       218 ~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p  295 (362)
                      .+..+|+.+.+|..+..-++     .|..+..+.++.   .+..++++++........--++|.|+.... |.++....
T Consensus       242 D~~~ldl~~~~W~~~~~~g~-----~p~~R~~h~~~~---~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~  312 (482)
T KOG0379|consen  242 DVHILDLSTWEWKLLPTGGD-----LPSPRSGHSLTV---SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG  312 (482)
T ss_pred             ceEeeecccceeeeccccCC-----CCCCcceeeeEE---ECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence            58999999999985421111     566666666663   788899999854321113457788876654 99998876

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.01  E-value=5.7e-08  Score=92.32  Aligned_cols=205  Identities=13%  Similarity=0.073  Sum_probs=133.6

Q ss_pred             eEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC----CCeEEEEeCCCCcccccccCCCCcccccc
Q 018005          122 SFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQ  196 (362)
Q Consensus       122 ~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~  196 (362)
                      .++++|-.+..|.....-.. +..+.++.++...  -+++.+||...    ...++.||..|++|+....  ... .-+.
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~--~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~--~~~-~P~~  163 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG--DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSP--TGD-PPPP  163 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEEC--CeEEEEccccCCCCChhheEeccCCCCcEEEecC--cCC-CCCC
Confidence            49999999999988765422 2222222222111  27888887652    2389999999999998872  211 1124


Q ss_pred             CCCcccEEECCEEEEEecCC------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeec
Q 018005          197 SSHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGR  270 (362)
Q Consensus       197 ~~~~~~v~~~G~ly~~~~~~------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~  270 (362)
                      +..+.++.++.++|+.++..      +.+.+||+++.+|..+...+.     .|..+..+.+++   .++++++++|.. 
T Consensus       164 r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~-----~P~pR~gH~~~~---~~~~~~v~gG~~-  234 (482)
T KOG0379|consen  164 RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGE-----APSPRYGHAMVV---VGNKLLVFGGGD-  234 (482)
T ss_pred             cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCC-----CCCCCCCceEEE---ECCeEEEEeccc-
Confidence            56788888899999998732      468999999999998765521     566667777774   899999999865 


Q ss_pred             CCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC-------CeEEEEECCCCce
Q 018005          271 NGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-------PEILYYNVARRTW  342 (362)
Q Consensus       271 ~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~v~~yd~~~~~w  342 (362)
                      .+....-++|.||-... |.++...+...         ..+.....+..++.+++.++..       ..+..||++++.|
T Consensus       235 ~~~~~l~D~~~ldl~~~~W~~~~~~g~~p---------~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w  305 (482)
T KOG0379|consen  235 DGDVYLNDVHILDLSTWEWKLLPTGGDLP---------SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVW  305 (482)
T ss_pred             cCCceecceEeeecccceeeeccccCCCC---------CCcceeeeEEECCEEEEEcCCcccccccccccccccccccce
Confidence            12233446777765554 99665432110         1111222234455566554322       3479999999999


Q ss_pred             EEcCCCC
Q 018005          343 HWLPSCP  349 (362)
Q Consensus       343 ~~~~~~~  349 (362)
                      .++....
T Consensus       306 ~~~~~~~  312 (482)
T KOG0379|consen  306 SKVESVG  312 (482)
T ss_pred             eeeeccc
Confidence            9997776

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.98  E-value=1e-07  Score=84.31  Aligned_cols=202  Identities=12%  Similarity=0.178  Sum_probs=129.1

Q ss_pred             CeEEEEeCCcCceeeccCCCC--CCccceEEEEeCCCceEEEEEeeecC---------CCeEEEEeCCCCcccccccCCC
Q 018005          121 SSFLVCNLVTLSSRTIDFPTY--PFDFELLTLVSTPSGYKIFMLFAKSF---------PNYAFVYDSTDQSWSKFDIDGF  189 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~--~~~~~~~~~~~~~~~ykv~~~~~~~~---------~~~~~vy~s~~~~W~~~~~~~~  189 (362)
                      +.+++||-.+.+|..+-.+..  ++..+.++..+.+   .++..||...         -..+.+||..+++|..+...+-
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~---~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~  174 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSN---ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGG  174 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCccceeEEeccC---eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCC
Confidence            468999999999999865543  3444433333322   4455555321         1278899999999998863233


Q ss_pred             CccccccCCCcccEEECCEEEEEecC----C-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCC
Q 018005          190 PSMILSQSSHQEGVFYKGSLYFTTPE----P-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN  260 (362)
Q Consensus       190 p~~~~~~~~~~~~v~~~G~ly~~~~~----~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G  260 (362)
                      |.    .+..++.|+....|...++-    +     +.+.+||+++-+|+.+..++-     -|..+..+.+.+.  -+|
T Consensus       175 PS----~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga-----~PtpRSGcq~~vt--pqg  243 (521)
T KOG1230|consen  175 PS----PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGA-----GPTPRSGCQFSVT--PQG  243 (521)
T ss_pred             CC----CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCC-----CCCCCCcceEEec--CCC
Confidence            33    45678899998888877652    1     458999999999999864420     2555666666642  499


Q ss_pred             eEEEEEEeec-------CCccceEEEEEECCCC----C--EEEEecccHHHHHHhhhccccCCccEEE-EeeCCEEEEEe
Q 018005          261 KLYLIGGVGR-------NGISTTMKLWELGCGG----N--WIEVERVPEMMCRKFMSVCYHNYDHVYC-FWHQGMICVCC  326 (362)
Q Consensus       261 ~L~vv~~~~~-------~~~~~~i~vw~l~~~~----~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~  326 (362)
                      .++|.||+..       +....+-+.|.|+...    .  |.++.......         ..+..+.+ ++.++.-++.+
T Consensus       244 ~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kP---------spRsgfsv~va~n~kal~FG  314 (521)
T KOG1230|consen  244 GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKP---------SPRSGFSVAVAKNHKALFFG  314 (521)
T ss_pred             cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCC---------CCCCceeEEEecCCceEEec
Confidence            9999999763       1234567899998764    2  88887653211         11222222 23333333333


Q ss_pred             ecC--------------CeEEEEECCCCceEEc
Q 018005          327 YTW--------------PEILYYNVARRTWHWL  345 (362)
Q Consensus       327 ~~~--------------~~v~~yd~~~~~w~~~  345 (362)
                      +..              +.++.||+..++|...
T Consensus       315 GV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  315 GVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             ceecccccchhhhhhhhhhhhheecccchhhHh
Confidence            221              2379999999999875

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.96  E-value=3.8e-10  Score=70.79  Aligned_cols=40  Identities=30%  Similarity=0.639  Sum_probs=35.1

Q ss_pred             hcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccc
Q 018005           13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF   52 (362)
Q Consensus        13 ~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F   52 (362)
                      |..||+|++.+||++|+++++.+++.|||+|+.++.++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l   40 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL   40 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence            6789999999999999999999999999999999987633

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.93  E-value=1.9e-08  Score=78.20  Aligned_cols=86  Identities=21%  Similarity=0.308  Sum_probs=62.5

Q ss_pred             cEEECCEEEEEecC----CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005          202 GVFYKGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM  277 (362)
Q Consensus       202 ~v~~~G~ly~~~~~----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i  277 (362)
                      ++++||.+||++..    ...|++||+++|+|+.+..|.+     .........|+ +  ++|+|+++..... .....+
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~-----~~~~~~~~~L~-~--~~G~L~~v~~~~~-~~~~~~   71 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPED-----PYSSDCSSTLI-E--YKGKLALVSYNDQ-GEPDSI   71 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeee-----eccccCccEEE-E--eCCeEEEEEecCC-CCcceE
Confidence            57899999999764    4689999999999999875410     11223456677 5  9999999977431 113579


Q ss_pred             EEEEECCCCC--EEEEec-ccH
Q 018005          278 KLWELGCGGN--WIEVER-VPE  296 (362)
Q Consensus       278 ~vw~l~~~~~--W~~v~~-~p~  296 (362)
                      ++|.|++.++  |++... +|.
T Consensus        72 ~iWvLeD~~k~~Wsk~~~~lp~   93 (129)
T PF08268_consen   72 DIWVLEDYEKQEWSKKHIVLPP   93 (129)
T ss_pred             EEEEeeccccceEEEEEEECCh
Confidence            9999986654  998865 444

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.78  E-value=1.3e-09  Score=68.82  Aligned_cols=43  Identities=40%  Similarity=0.651  Sum_probs=36.5

Q ss_pred             hhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccccc
Q 018005           12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLS   54 (362)
Q Consensus        12 ~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~~   54 (362)
                      +|..||+|++.+||.+|+..++.+++.|||+|++++.+..+..
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~   44 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWK   44 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccH
Confidence            5789999999999999999999999999999999999876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.70  E-value=8.1e-09  Score=62.72  Aligned_cols=38  Identities=45%  Similarity=0.802  Sum_probs=35.6

Q ss_pred             CCHHHHHHHHccCChhhhhhhhccchhhhhhccCcccc
Q 018005           16 LPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFL   53 (362)
Q Consensus        16 LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~   53 (362)
                      ||+|++.+||++|+..++.+++.|||+|+.++.++.+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~   38 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW   38 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence            79999999999999999999999999999999887664

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.66  E-value=2.3e-06  Score=75.99  Aligned_cols=166  Identities=18%  Similarity=0.230  Sum_probs=104.3

Q ss_pred             eEEEEeCCCCcccccccCCCCccccccCCCcccEEEC-CEEEEEecCC-----------cEEEEEEcCCCeeecCCCCCc
Q 018005          170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYK-GSLYFTTPEP-----------FSIVRFDLENGIWETPNDAND  237 (362)
Q Consensus       170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~-G~ly~~~~~~-----------~~i~~~D~~~~~w~~~~~p~~  237 (362)
                      .++.|+.+++.|+....   |..+. .+.++.+|++. |.+|..++.-           ..+..||..+.+|+.+..++ 
T Consensus        99 dLy~Yn~k~~eWkk~~s---pn~P~-pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-  173 (521)
T KOG1230|consen   99 DLYSYNTKKNEWKKVVS---PNAPP-PRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-  173 (521)
T ss_pred             eeeEEeccccceeEecc---CCCcC-CCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-
Confidence            78899999999998763   33223 34567777775 7777776631           24889999999999987665 


Q ss_pred             ccccCCCCcccccceeecccCCCeEEEEEEeecCC--ccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEE
Q 018005          238 HMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG--ISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVY  314 (362)
Q Consensus       238 ~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~--~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~  314 (362)
                           -|+.+..+.+++   +..+|.++||..+..  ....-+||.++-+. +|.++.. +.     ..+   ..+....
T Consensus       174 -----~PS~RSGHRMva---wK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sg-----a~P---tpRSGcq  236 (521)
T KOG1230|consen  174 -----GPSPRSGHRMVA---WKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SG-----AGP---TPRSGCQ  236 (521)
T ss_pred             -----CCCCCccceeEE---eeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CC-----CCC---CCCCcce
Confidence                 688888999995   999999999975421  11223455544333 5999876 21     011   1112222


Q ss_pred             -EEeeCCEEEEEeecCCe--------------EEEEECCCC-----ceEEcCCC---CCCCCCCCc
Q 018005          315 -CFWHQGMICVCCYTWPE--------------ILYYNVARR-----TWHWLPSC---PSLPHKWSC  357 (362)
Q Consensus       315 -~~~~~~~i~~~~~~~~~--------------v~~yd~~~~-----~w~~~~~~---~~~~~~~~~  357 (362)
                       .+.-+|-||+.++++.+              ++..+++++     +|.++-..   |.+..-+||
T Consensus       237 ~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv  302 (521)
T KOG1230|consen  237 FSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSV  302 (521)
T ss_pred             EEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeE
Confidence             22335667877665422              578888873     56665333   334444444

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=98.60  E-value=9.6e-07  Score=71.63  Aligned_cols=128  Identities=16%  Similarity=0.230  Sum_probs=75.6

Q ss_pred             cEEECCEEEEEecCC-----cEEEEEEcCCCee-ecCCCCCcccccCCCCccc----ccceeecccCCCeEEEEEEeecC
Q 018005          202 GVFYKGSLYFTTPEP-----FSIVRFDLENGIW-ETPNDANDHMTMMLPHELT----FFRLVNDGEESNKLYLIGGVGRN  271 (362)
Q Consensus       202 ~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w-~~~~~p~~~~~~~~p~~~~----~~~lv~~~~~~G~L~vv~~~~~~  271 (362)
                      +|++||.+||++...     ..|++||+.+|+| ..++         +|....    ...|.+.  .+|+|+++...   
T Consensus         1 gV~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~---------lP~~~~~~~~~~~L~~v--~~~~L~~~~~~---   66 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLP---------LPFCNDDDDDSVSLSVV--RGDCLCVLYQC---   66 (164)
T ss_pred             CEEECCEEEeeEEecCCCCceEEEEEeccccccCCEEC---------CCCccCccCCEEEEEEe--cCCEEEEEEec---
Confidence            589999999998643     1699999999999 6655         333222    3344222  57899999652   


Q ss_pred             CccceEEEEEECCC----CCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEe-ecC-----CeEEEEECCCCc
Q 018005          272 GISTTMKLWELGCG----GNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCC-YTW-----PEILYYNVARRT  341 (362)
Q Consensus       272 ~~~~~i~vw~l~~~----~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~-----~~v~~yd~~~~~  341 (362)
                      .....++||.+++.    .+|++..+++......+..   ........+..++.+.+.. ...     ..+..|+ +++.
T Consensus        67 ~~~~~~~IWvm~~~~~~~~SWtK~~~i~~~~~~~~~~---~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~  142 (164)
T PF07734_consen   67 DETSKIEIWVMKKYGYGKESWTKLFTIDLPPLPSLFF---HFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGK  142 (164)
T ss_pred             cCCccEEEEEEeeeccCcceEEEEEEEecCCCCCccc---ccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCE
Confidence            23456999999852    2499998886432211110   0001112223344444432 111     3477888 6677


Q ss_pred             eEEcCC
Q 018005          342 WHWLPS  347 (362)
Q Consensus       342 w~~~~~  347 (362)
                      .+.+.-
T Consensus       143 ~~~~~~  148 (164)
T PF07734_consen  143 FIEVDI  148 (164)
T ss_pred             EEEccc
Confidence            776643

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.41  E-value=1.4e-05  Score=69.50  Aligned_cols=39  Identities=23%  Similarity=0.450  Sum_probs=36.0

Q ss_pred             hcCCC----HHHHHHHHccCChhhhhhhhccchhhhhhccCcc
Q 018005           13 WSRLP----EDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS   51 (362)
Q Consensus        13 ~~~LP----~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~   51 (362)
                      +..||    +++.+.||+.|...+|..+..|||+|+++++++.
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~  117 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGM  117 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccch
Confidence            46789    9999999999999999999999999999998763

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.00  E-value=0.00033  Score=64.34  Aligned_cols=214  Identities=15%  Similarity=0.146  Sum_probs=116.3

Q ss_pred             CceEEEe-cCCC---CeEEEEeCCcCceeeccCC--CCCCccceEEEEeCCCceEEEEEeeec--CCCeEEEEeCCCC--
Q 018005          110 KGLLCFS-LPSS---SSFLVCNLVTLSSRTIDFP--TYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQ--  179 (362)
Q Consensus       110 ~Gll~~~-~~~~---~~~~v~NP~t~~w~~lP~~--~~~~~~~~~~~~~~~~~ykv~~~~~~~--~~~~~~vy~s~~~--  179 (362)
                      .-|+.+. ++++   ++++|||-.|+||-. |..  ..+....++||...+.  +|+++||+.  ...+=+.|.....  
T Consensus        42 kELiviFGGGNEGiiDELHvYNTatnqWf~-PavrGDiPpgcAA~GfvcdGt--rilvFGGMvEYGkYsNdLYELQasRW  118 (830)
T KOG4152|consen   42 KELIVIFGGGNEGIIDELHVYNTATNQWFA-PAVRGDIPPGCAAFGFVCDGT--RILVFGGMVEYGKYSNDLYELQASRW  118 (830)
T ss_pred             eeeEEEecCCcccchhhhhhhccccceeec-chhcCCCCCchhhcceEecCc--eEEEEccEeeeccccchHHHhhhhhh
Confidence            3454444 4333   478999999999974 332  2234445566665433  888888863  2334456666554  


Q ss_pred             ccccccc----CCCCccccccCCCcccEEECCEEEEEecCC--------------cEEEEEEcC--CC--eeecCCCCCc
Q 018005          180 SWSKFDI----DGFPSMILSQSSHQEGVFYKGSLYFTTPEP--------------FSIVRFDLE--NG--IWETPNDAND  237 (362)
Q Consensus       180 ~W~~~~~----~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~--------------~~i~~~D~~--~~--~w~~~~~p~~  237 (362)
                      .|+.+..    .+.|  ++ .+..+.-..++++.|..++-.              +.+...++.  .+  .|+....-  
T Consensus       119 eWkrlkp~~p~nG~p--PC-PRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~--  193 (830)
T KOG4152|consen  119 EWKRLKPKTPKNGPP--PC-PRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITY--  193 (830)
T ss_pred             hHhhcCCCCCCCCCC--CC-CccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEeccccc--
Confidence            4555541    1122  23 346677778889999987611              224444443  32  56653111  


Q ss_pred             ccccCCCCcccccceeecccCC---CeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccE
Q 018005          238 HMTMMLPHELTFFRLVNDGEES---NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHV  313 (362)
Q Consensus       238 ~~~~~~p~~~~~~~lv~~~~~~---G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~  313 (362)
                         +.+|..++.+.-|..-|.|   .++++.|++.+   ..-=++|.||-+.. |.+...-...      .  +. +.-.
T Consensus       194 ---Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ldl~Tl~W~kp~~~G~~------P--lP-RSLH  258 (830)
T KOG4152|consen  194 ---GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLDLDTLTWNKPSLSGVA------P--LP-RSLH  258 (830)
T ss_pred             ---CCCCCCcccceeEEEEeccCCcceEEEEccccc---ccccceeEEecceeecccccccCCC------C--CC-cccc
Confidence               1155555544333211133   46788887643   23347899987765 9986421100      0  00 0111


Q ss_pred             EEEeeCCEEEEEee-------------------cCCeEEEEECCCCceEEcC
Q 018005          314 YCFWHQGMICVCCY-------------------TWPEILYYNVARRTWHWLP  346 (362)
Q Consensus       314 ~~~~~~~~i~~~~~-------------------~~~~v~~yd~~~~~w~~~~  346 (362)
                      .+...||..|+.++                   -...+-++|+++..|+.+-
T Consensus       259 sa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~  310 (830)
T KOG4152|consen  259 SATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLL  310 (830)
T ss_pred             cceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeee
Confidence            22234555666542                   0124789999999999874

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.77  E-value=0.00071  Score=59.63  Aligned_cols=157  Identities=20%  Similarity=0.272  Sum_probs=95.2

Q ss_pred             CeEEEEeCC--cCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecC--------CCeEEEEeCCCCcccccccCCC
Q 018005          121 SSFLVCNLV--TLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSF--------PNYAFVYDSTDQSWSKFDIDGF  189 (362)
Q Consensus       121 ~~~~v~NP~--t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~--------~~~~~vy~s~~~~W~~~~~~~~  189 (362)
                      ..+++.|..  .+.|.++...+- +|.....++...    ++++.++...        ...++.||+.+++|....+ ..
T Consensus        58 ~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~----kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t-~s  132 (381)
T COG3055          58 TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGG----KLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT-RS  132 (381)
T ss_pred             ccceehhhhcCCCCceEcccCCCcccccchheeeCC----eEEEeeccccCCCCCceEeeeeEEecCCCChhheecc-cc
Confidence            345554443  467988876554 343333333322    6776665421        1278999999999998874 33


Q ss_pred             CccccccCCCcccEEECC-EEEEEecCC---------------------------------------cEEEEEEcCCCee
Q 018005          190 PSMILSQSSHQEGVFYKG-SLYFTTPEP---------------------------------------FSIVRFDLENGIW  229 (362)
Q Consensus       190 p~~~~~~~~~~~~v~~~G-~ly~~~~~~---------------------------------------~~i~~~D~~~~~w  229 (362)
                      |. .   ...+.++.+++ ++|+.++-.                                       ..+++||+++++|
T Consensus       133 P~-g---l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W  208 (381)
T COG3055         133 PT-G---LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQW  208 (381)
T ss_pred             cc-c---cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchh
Confidence            33 2   24566777777 999987510                                       2489999999999


Q ss_pred             ecCCCCCcccccCCCCcc-cccceeecccCCCeEEEEEEeecCCccceEEEEEECC--CCC-EEEEecccHHH
Q 018005          230 ETPNDANDHMTMMLPHEL-TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC--GGN-WIEVERVPEMM  298 (362)
Q Consensus       230 ~~~~~p~~~~~~~~p~~~-~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~--~~~-W~~v~~~p~~~  298 (362)
                      +..- -       .|-.. ....++ .  -+++|.+|.+.-.++ ..+-++++.+.  ++. |.++..+|...
T Consensus       209 ~~~G-~-------~pf~~~aGsa~~-~--~~n~~~lInGEiKpG-LRt~~~k~~~~~~~~~~w~~l~~lp~~~  269 (381)
T COG3055         209 RNLG-E-------NPFYGNAGSAVV-I--KGNKLTLINGEIKPG-LRTAEVKQADFGGDNLKWLKLSDLPAPI  269 (381)
T ss_pred             hhcC-c-------CcccCccCccee-e--cCCeEEEEcceecCC-ccccceeEEEeccCceeeeeccCCCCCC
Confidence            9853 1       23222 233444 2  577799998855433 23334444433  333 99998887543

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.66  E-value=0.0043  Score=57.29  Aligned_cols=264  Identities=14%  Similarity=0.127  Sum_probs=129.2

Q ss_pred             hhhhhccC--ccccccccccCCCcceEEEE-ecCC--CCceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCc-eEEE
Q 018005           42 HFNSLLFS--PSFLSKTKCSSSAFSCFILL-SHPQ--CYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKG-LLCF  115 (362)
Q Consensus        42 ~W~~~i~~--~~F~~~~~~~~~~~~~~l~~-~~~~--~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~G-ll~~  115 (362)
                      +||++..+  |.-+.+|-.++-....++++ .+++  ..+++++|+...++|..-....-.|.....+ -..|+| -|++
T Consensus        18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~-GfvcdGtrilv   96 (830)
T KOG4152|consen   18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAF-GFVCDGTRILV   96 (830)
T ss_pred             ceEEEecccCCCCCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhc-ceEecCceEEE
Confidence            46666543  33333333222222234443 3333  2367899999999997532221222222222 223445 2444


Q ss_pred             ecC------CCCeEEEEeCCcCceeeccCCC-------CCCccceEEEEeCCCceEEEEEeeecCC------------Ce
Q 018005          116 SLP------SSSSFLVCNLVTLSSRTIDFPT-------YPFDFELLTLVSTPSGYKIFMLFAKSFP------------NY  170 (362)
Q Consensus       116 ~~~------~~~~~~v~NP~t~~w~~lP~~~-------~~~~~~~~~~~~~~~~ykv~~~~~~~~~------------~~  170 (362)
                      .++      .++.++-.-..-=+|++|-+-.       .++-.+.|.+..    -|.+.+||..++            ..
T Consensus        97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g----nKcYlFGGLaNdseDpknNvPrYLnD  172 (830)
T KOG4152|consen   97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG----NKCYLFGGLANDSEDPKNNVPRYLND  172 (830)
T ss_pred             EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec----cEeEEeccccccccCcccccchhhcc
Confidence            433      2233333333334577774321       122223333332    266777664321            14


Q ss_pred             EEEEeCCC----CcccccccCCCCccccccCCCcccEEE------CCEEEEEecC----CcEEEEEEcCCCeeecCCCCC
Q 018005          171 AFVYDSTD----QSWSKFDIDGFPSMILSQSSHQEGVFY------KGSLYFTTPE----PFSIVRFDLENGIWETPNDAN  236 (362)
Q Consensus       171 ~~vy~s~~----~~W~~~~~~~~p~~~~~~~~~~~~v~~------~G~ly~~~~~----~~~i~~~D~~~~~w~~~~~p~  236 (362)
                      +++....-    =.|...-..+.-  +.++ -++.+|..      ..++|+.++.    -..+.-.|+++..|......+
T Consensus       173 lY~leL~~Gsgvv~W~ip~t~Gv~--P~pR-ESHTAViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G  249 (830)
T KOG4152|consen  173 LYILELRPGSGVVAWDIPITYGVL--PPPR-ESHTAVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSG  249 (830)
T ss_pred             eEEEEeccCCceEEEecccccCCC--CCCc-ccceeEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccC
Confidence            45544432    248655421111  1122 34555544      2467777653    245889999999998754221


Q ss_pred             cccccCCCCcccccceeecccCCCeEEEEEEeec----CC----------ccceEEEEEECCCCCEEEEecccHHHHHHh
Q 018005          237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGR----NG----------ISTTMKLWELGCGGNWIEVERVPEMMCRKF  302 (362)
Q Consensus       237 ~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~----~~----------~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~  302 (362)
                        .. -||+.++...+     .+++.|+.|+..-    +.          .+..+..|.|| ...|+.+..-..+-  +-
T Consensus       250 --~~-PlPRSLHsa~~-----IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNld-t~~W~tl~~d~~ed--~t  318 (830)
T KOG4152|consen  250 --VA-PLPRSLHSATT-----IGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD-TMAWETLLMDTLED--NT  318 (830)
T ss_pred             --CC-CCCccccccee-----ecceeEEecceeeeeccccccccccceeeeccceeeeeec-chheeeeeeccccc--cc
Confidence              00 06665544333     6899999998541    10          23556777774 34488763221110  00


Q ss_pred             hhccccCCccEEEEeeCCEEEEEee
Q 018005          303 MSVCYHNYDHVYCFWHQGMICVCCY  327 (362)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~i~~~~~  327 (362)
                      ..   ..+....+++.+.++|+-++
T Consensus       319 iP---R~RAGHCAvAigtRlYiWSG  340 (830)
T KOG4152|consen  319 IP---RARAGHCAVAIGTRLYIWSG  340 (830)
T ss_pred             cc---cccccceeEEeccEEEEEec
Confidence            10   13345556678889999864

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.59  E-value=0.0032  Score=55.64  Aligned_cols=159  Identities=18%  Similarity=0.267  Sum_probs=99.4

Q ss_pred             CeEEEEeCCC--CcccccccCCCCccccccCCCcccEEECCEEEEEecCC----------cEEEEEEcCCCeeecCCCCC
Q 018005          169 NYAFVYDSTD--QSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------FSIVRFDLENGIWETPNDAN  236 (362)
Q Consensus       169 ~~~~vy~s~~--~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~----------~~i~~~D~~~~~w~~~~~p~  236 (362)
                      ...+.-|.+.  ..|+..+  ..|-..   +-....++++|+||+.++.+          ..+..||+.+++|..++.- 
T Consensus        58 ~afy~ldL~~~~k~W~~~a--~FpG~~---rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~-  131 (381)
T COG3055          58 TAFYVLDLKKPGKGWTKIA--DFPGGA---RNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTR-  131 (381)
T ss_pred             ccceehhhhcCCCCceEcc--cCCCcc---cccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccc-
Confidence            4566667754  6899998  666521   23455788999999997632          3578999999999987655 


Q ss_pred             cccccCCCCcccccceeecccCCC-eEEEEEEeecCC--------------------------------ccceEEEEEEC
Q 018005          237 DHMTMMLPHELTFFRLVNDGEESN-KLYLIGGVGRNG--------------------------------ISTTMKLWELG  283 (362)
Q Consensus       237 ~~~~~~~p~~~~~~~lv~~~~~~G-~L~vv~~~~~~~--------------------------------~~~~i~vw~l~  283 (362)
                            .|.+........   .++ ++++.++++...                                ..-.-+|+..+
T Consensus       132 ------sP~gl~G~~~~~---~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~  202 (381)
T COG3055         132 ------SPTGLVGASTFS---LNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD  202 (381)
T ss_pred             ------cccccccceeEe---cCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence                  677766555543   666 899999975310                                00112455555


Q ss_pred             CCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec------CCeEEEEECCCC--ceEEcCCCCCCCC
Q 018005          284 CGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT------WPEILYYNVARR--TWHWLPSCPSLPH  353 (362)
Q Consensus       284 ~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~~~v~~yd~~~~--~w~~~~~~~~~~~  353 (362)
                      +.++ |.-....|      +..     ......+..+|.+.+..+.      +.++..++...+  +|.+++.+|-+.+
T Consensus       203 p~~n~W~~~G~~p------f~~-----~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~  270 (381)
T COG3055         203 PSTNQWRNLGENP------FYG-----NAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIG  270 (381)
T ss_pred             cccchhhhcCcCc------ccC-----ccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCC
Confidence            5554 77666554      221     1222333456644444321      235677777754  8999988877543

>PF13964 Kelch_6: Kelch motif

Probab=97.53  E-value=0.00031  Score=44.34  Aligned_cols=38  Identities=24%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             EEEeeCCEEEEEeecC------CeEEEEECCCCceEEcCCCCCC
Q 018005          314 YCFWHQGMICVCCYTW------PEILYYNVARRTWHWLPSCPSL  351 (362)
Q Consensus       314 ~~~~~~~~i~~~~~~~------~~v~~yd~~~~~w~~~~~~~~~  351 (362)
                      .++..++.||+.++..      ..+.+||+++++|+.++++|.+
T Consensus         6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            4556778899987643      3589999999999999999865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=6e-05  Score=64.93  Aligned_cols=40  Identities=38%  Similarity=0.627  Sum_probs=37.2

Q ss_pred             hhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCcc
Q 018005           12 IWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS   51 (362)
Q Consensus        12 ~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~   51 (362)
                      .|.+||||++..||+.|+.++|.++..|||+|+++.++.+
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            4889999999999999999999999999999999987654

>PF13964 Kelch_6: Kelch motif

Probab=97.38  E-value=0.0005  Score=43.34  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=30.3

Q ss_pred             CCcccEEECCEEEEEecCC------cEEEEEEcCCCeeecCC
Q 018005          198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPN  233 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~~------~~i~~~D~~~~~w~~~~  233 (362)
                      ..+..|.++|+||++++..      ..+.+||+++++|+.+.
T Consensus         3 ~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~   44 (50)
T PF13964_consen    3 YGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLP   44 (50)
T ss_pred             ccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECC
Confidence            4567899999999998742      46899999999999874

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=97.32  E-value=0.031  Score=53.95  Aligned_cols=282  Identities=17%  Similarity=0.126  Sum_probs=135.0

Q ss_pred             hhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccccccccc-cCCCc----ceEEEEecCC--CCc-eee-e
Q 018005           10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKC-SSSAF----SCFILLSHPQ--CYD-QYP-L   80 (362)
Q Consensus        10 ~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~~~~~~-~~~~~----~~~l~~~~~~--~~~-~~~-~   80 (362)
                      +.-++.||.++...||..|+.++++++++||+.|+.++.+.....+... .....    .+-.......  .+. ... .
T Consensus       105 ~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ks~~~~  184 (537)
T KOG0274|consen  105 RDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIGRLPPKCEKGLPLKSGFKGRPWKSFYRR  184 (537)
T ss_pred             cchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcccCCcccCcccccccccccchhhhhhhh
Confidence            4566889999999999999999999999999999999986554332211 10000    0000000000  000 000 0


Q ss_pred             eeCCCCCeEeecCCc---CCCC-CCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCc
Q 018005           81 YDSTHGTWRRLSLPY---SLLL-PSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG  156 (362)
Q Consensus        81 ~d~~~~~w~~~~~~~---~~~~-~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~  156 (362)
                      ..-....|.....+.   .++. ........-.+| .+..+.....+.+|+..++.-...+.....-...++.+..  ..
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~-~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~--~~  261 (537)
T KOG0274|consen  185 RFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDG-FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS--GG  261 (537)
T ss_pred             hhhccccccccccccceeecccCcchhhhheeecC-eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEec--CC
Confidence            011112332222110   0100 000100011122 2233333455679999999877664443333333444432  23


Q ss_pred             eEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEE-ecCCcEEEEEEcCCCeeecCC
Q 018005          157 YKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFT-TPEPFSIVRFDLENGIWETPN  233 (362)
Q Consensus       157 ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~-~~~~~~i~~~D~~~~~w~~~~  233 (362)
                      .+++. |.  .+.++.++|-.++.=...         +.  .....+.+  .+..+.+ +....++.++|..+...-.+.
T Consensus       262 ~~lvs-gS--~D~t~rvWd~~sg~C~~~---------l~--gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~  327 (537)
T KOG0274|consen  262 DKLVS-GS--TDKTERVWDCSTGECTHS---------LQ--GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLL  327 (537)
T ss_pred             CEEEE-Ee--cCCcEEeEecCCCcEEEE---------ec--CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEe
Confidence            34442 22  234666776555421111         10  11212211  2233333 345568999999876554432


Q ss_pred             CCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccE
Q 018005          234 DANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV  313 (362)
Q Consensus       234 ~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~  313 (362)
                      .          ........+ .  +++.+.+.+..     ...|.||+.. ..+  -+.++        -    ++-..+
T Consensus       328 ~----------~h~~~V~~v-~--~~~~~lvsgs~-----d~~v~VW~~~-~~~--cl~sl--------~----gH~~~V  374 (537)
T KOG0274|consen  328 R----------GHTGPVNCV-Q--LDEPLLVSGSY-----DGTVKVWDPR-TGK--CLKSL--------S----GHTGRV  374 (537)
T ss_pred             c----------cccccEEEE-E--ecCCEEEEEec-----CceEEEEEhh-hce--eeeee--------c----CCcceE
Confidence            1          000111223 2  56777776653     3589999774 221  12222        0    223345


Q ss_pred             EEEeeCC-EEEEEeecCCeEEEEECCCCc
Q 018005          314 YCFWHQG-MICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       314 ~~~~~~~-~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      .++..++ -.++.+.....|-++|+++.+
T Consensus       375 ~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~  403 (537)
T KOG0274|consen  375 YSLIVDSENRLLSGSLDTTIKVWDLRTKR  403 (537)
T ss_pred             EEEEecCcceEEeeeeccceEeecCCchh
Confidence            5543333 444544455779999999885

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.28  E-value=0.00065  Score=42.12  Aligned_cols=37  Identities=22%  Similarity=0.183  Sum_probs=30.2

Q ss_pred             EEEEeeCCEEEEEeecCC------eEEEEECCCCceEEcCCCC
Q 018005          313 VYCFWHQGMICVCCYTWP------EILYYNVARRTWHWLPSCP  349 (362)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~------~v~~yd~~~~~w~~~~~~~  349 (362)
                      ..++..++.||+.++...      .++.||+++++|+.++++|
T Consensus         5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            456678899999876433      4899999999999998876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.27  E-value=0.00076  Score=41.81  Aligned_cols=43  Identities=26%  Similarity=0.478  Sum_probs=29.5

Q ss_pred             ccceeecccCCCeEEEEEEeec-CCccceEEEEEECCCCCEEEEeccc
Q 018005          249 FFRLVNDGEESNKLYLIGGVGR-NGISTTMKLWELGCGGNWIEVERVP  295 (362)
Q Consensus       249 ~~~lv~~~~~~G~L~vv~~~~~-~~~~~~i~vw~l~~~~~W~~v~~~p  295 (362)
                      .+.+++   .+++||++||... .....++++|++ +.+.|+++.+||
T Consensus         4 ~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~yd~-~~~~W~~~~~mp   47 (47)
T PF01344_consen    4 GHAAVV---VGNKIYVIGGYDGNNQPTNSVEVYDP-ETNTWEELPPMP   47 (47)
T ss_dssp             SEEEEE---ETTEEEEEEEBESTSSBEEEEEEEET-TTTEEEEEEEES
T ss_pred             cCEEEE---ECCEEEEEeeecccCceeeeEEEEeC-CCCEEEEcCCCC
Confidence            344553   8999999999876 334455555544 234499999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.77  E-value=0.0024  Score=40.03  Aligned_cols=38  Identities=29%  Similarity=0.621  Sum_probs=27.2

Q ss_pred             CCCeEEEEEEe-ecCCccceEEEEEECCCCC-EEEEeccc
Q 018005          258 ESNKLYLIGGV-GRNGISTTMKLWELGCGGN-WIEVERVP  295 (362)
Q Consensus       258 ~~G~L~vv~~~-~~~~~~~~i~vw~l~~~~~-W~~v~~~p  295 (362)
                      .+++|||+|+. .........++|.+|..+. |+++..+|
T Consensus        10 ~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen   10 LDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             ECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            89999999998 2223345556677776655 99988764

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>smart00612 Kelch Kelch domain

Probab=96.71  E-value=0.0037  Score=38.40  Aligned_cols=44  Identities=20%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             EEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECC
Q 018005          158 KIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKG  207 (362)
Q Consensus       158 kv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G  207 (362)
                      +|+++||...   ...+++||+++++|+..+  .||.    .+..+..+.++|
T Consensus         1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~~~----~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLP--SMPT----PRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCCceeeeEEEECCCCCeEccCC--CCCC----ccccceEEEeCC
Confidence            3667776532   348999999999999988  6665    234444555554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.68  E-value=0.32  Score=42.04  Aligned_cols=208  Identities=16%  Similarity=0.205  Sum_probs=109.5

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCC
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGF  189 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  189 (362)
                      +|-|++.....+.++.++|.+++......+.    ..++++...  +-++++...    ....++|..+++++...  ..
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~--~g~l~v~~~----~~~~~~d~~~g~~~~~~--~~   78 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRP--DGRLYVADS----GGIAVVDPDTGKVTVLA--DL   78 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECT--TSEEEEEET----TCEEEEETTTTEEEEEE--EE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEcc--CCEEEEEEc----CceEEEecCCCcEEEEe--ec
Confidence            5555555545678999999999876544332    223333311  235555432    34567799999998776  33


Q ss_pred             CccccccCCCcccEEE-CCEEEEEecCC--------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCC
Q 018005          190 PSMILSQSSHQEGVFY-KGSLYFTTPEP--------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN  260 (362)
Q Consensus       190 p~~~~~~~~~~~~v~~-~G~ly~~~~~~--------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G  260 (362)
                      +..........+.++- +|.+|+.....        ..+..+++. .+...+....     ..|.     .+...  -+|
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~-----~~pN-----Gi~~s--~dg  145 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL-----GFPN-----GIAFS--PDG  145 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE-----SSEE-----EEEEE--TTS
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc-----cccc-----ceEEC--Ccc
Confidence            2111011112222222 78998875421        358889998 5554432110     0222     23322  566


Q ss_pred             e-EEEEEEeecCCccceEEEEEECCCCC-EEEEe---cccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEE
Q 018005          261 K-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVE---RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYY  335 (362)
Q Consensus       261 ~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~y  335 (362)
                      + ||+...     ....|..+.++..+. +....   .++...          ....=.++..++.||+.....+.|.+|
T Consensus       146 ~~lyv~ds-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------g~pDG~~vD~~G~l~va~~~~~~I~~~  210 (246)
T PF08450_consen  146 KTLYVADS-----FNGRIWRFDLDADGGELSNRRVFIDFPGGP----------GYPDGLAVDSDGNLWVADWGGGRIVVF  210 (246)
T ss_dssp             SEEEEEET-----TTTEEEEEEEETTTCCEEEEEEEEE-SSSS----------CEEEEEEEBTTS-EEEEEETTTEEEEE
T ss_pred             hheeeccc-----ccceeEEEeccccccceeeeeeEEEcCCCC----------cCCCcceEcCCCCEEEEEcCCCEEEEE
Confidence            5 555543     346677777764443 44332   221100          011223344567789988778899999


Q ss_pred             ECCCCceEEcCCCCCCCCCCCcce
Q 018005          336 NVARRTWHWLPSCPSLPHKWSCGF  359 (362)
Q Consensus       336 d~~~~~w~~~~~~~~~~~~~~~~~  359 (362)
                      |++-+....++ +| ..+.-+|.|
T Consensus       211 ~p~G~~~~~i~-~p-~~~~t~~~f  232 (246)
T PF08450_consen  211 DPDGKLLREIE-LP-VPRPTNCAF  232 (246)
T ss_dssp             ETTSCEEEEEE--S-SSSEEEEEE
T ss_pred             CCCccEEEEEc-CC-CCCEEEEEE
Confidence            99944444443 44 235666666

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=96.64  E-value=0.0048  Score=38.60  Aligned_cols=30  Identities=10%  Similarity=0.343  Sum_probs=25.0

Q ss_pred             CeEEEEECCCCceEEcCCCCCCCCCCCcce
Q 018005          330 PEILYYNVARRTWHWLPSCPSLPHKWSCGF  359 (362)
Q Consensus       330 ~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~  359 (362)
                      +.+.+||+++++|++++..|.+...+++.+
T Consensus        19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen   19 NDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             cCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            358999999999999999888877766653

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=96.30  E-value=0.01  Score=36.99  Aligned_cols=32  Identities=28%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             CCEEEEEeec------CCeEEEEECCCCceEEcCCCCC
Q 018005          319 QGMICVCCYT------WPEILYYNVARRTWHWLPSCPS  350 (362)
Q Consensus       319 ~~~i~~~~~~------~~~v~~yd~~~~~w~~~~~~~~  350 (362)
                      ++.||+.++.      .+.+..||+++++|++++++|.
T Consensus        12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen   12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred             CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence            4667776542      2358999999999999987774

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.25  E-value=0.019  Score=35.86  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=28.5

Q ss_pred             EEEEeeCCEEEEEeec--------CCeEEEEECCCCceEEcCCCC
Q 018005          313 VYCFWHQGMICVCCYT--------WPEILYYNVARRTWHWLPSCP  349 (362)
Q Consensus       313 ~~~~~~~~~i~~~~~~--------~~~v~~yd~~~~~w~~~~~~~  349 (362)
                      ..++..++.||+.++.        ...+.+||+++++|+.++.+|
T Consensus         5 hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    5 HSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             eEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            3455678888888755        124899999999999998765

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=96.19  E-value=0.14  Score=43.94  Aligned_cols=155  Identities=13%  Similarity=0.200  Sum_probs=84.2

Q ss_pred             eEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC---cEEEEEEcCC----CeeecCCCCCcccccC
Q 018005          170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP---FSIVRFDLEN----GIWETPNDANDHMTMM  242 (362)
Q Consensus       170 ~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~---~~i~~~D~~~----~~w~~~~~p~~~~~~~  242 (362)
                      ...+||+.+++++...   +....+   ++...+.-||.+...++..   ..+..|++.+    ..|......       
T Consensus        47 ~s~~yD~~tn~~rpl~---v~td~F---CSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~-------  113 (243)
T PF07250_consen   47 HSVEYDPNTNTFRPLT---VQTDTF---CSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPND-------  113 (243)
T ss_pred             EEEEEecCCCcEEecc---CCCCCc---ccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccc-------
Confidence            3458999999999886   222122   3444455589888887642   4577899876    567653211       


Q ss_pred             CCCcccc-cceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCC
Q 018005          243 LPHELTF-FRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQG  320 (362)
Q Consensus       243 ~p~~~~~-~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  320 (362)
                      |-..+=. .... -  -+|+++|++|..    ..+.|.|--.... ....+.-+. ...+ ...   ..+.++..+.-++
T Consensus       114 m~~~RWYpT~~~-L--~DG~vlIvGG~~----~~t~E~~P~~~~~~~~~~~~~l~-~~~~-~~~---~nlYP~~~llPdG  181 (243)
T PF07250_consen  114 MQSGRWYPTATT-L--PDGRVLIVGGSN----NPTYEFWPPKGPGPGPVTLPFLS-QTSD-TLP---NNLYPFVHLLPDG  181 (243)
T ss_pred             ccCCCccccceE-C--CCCCEEEEeCcC----CCcccccCCccCCCCceeeecch-hhhc-cCc---cccCceEEEcCCC
Confidence            2222212 2222 1  699999999943    3445555221111 111111111 1100 000   1223344444456


Q ss_pred             EEEEEeecCCeEEEEECCCCce-EEcCCCCCC
Q 018005          321 MICVCCYTWPEILYYNVARRTW-HWLPSCPSL  351 (362)
Q Consensus       321 ~i~~~~~~~~~v~~yd~~~~~w-~~~~~~~~~  351 (362)
                      .|++..  ...-..||.+++++ +.+|.+|-.
T Consensus       182 ~lFi~a--n~~s~i~d~~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  182 NLFIFA--NRGSIIYDYKTNTVVRTLPDLPGG  211 (243)
T ss_pred             CEEEEE--cCCcEEEeCCCCeEEeeCCCCCCC
Confidence            667665  24568889999987 778888864

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.10  E-value=0.71  Score=38.88  Aligned_cols=214  Identities=9%  Similarity=0.050  Sum_probs=100.6

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc----cccc
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS----WSKF  184 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~----W~~~  184 (362)
                      .+|--|+..++++.+.+|||..+.-.+-=.- ..+.  .+-.+...+.-|+...|   ....+.+||.+|++    |+.+
T Consensus        27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~E--VlD~~~s~Dnskf~s~G---gDk~v~vwDV~TGkv~Rr~rgH  100 (307)
T KOG0316|consen   27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHE--VLDAALSSDNSKFASCG---GDKAVQVWDVNTGKVDRRFRGH  100 (307)
T ss_pred             cCCCEEEEcCCCceEEeecccccceeeeecC-CCce--eeeccccccccccccCC---CCceEEEEEcccCeeeeecccc
Confidence            4555667777788999999999875431100 0011  11011111222443333   34688999998864    5544


Q ss_pred             ccCCCCccccccCCCcccEEECC--EEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeE
Q 018005          185 DIDGFPSMILSQSSHQEGVFYKG--SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL  262 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~~G--~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L  262 (362)
                      .-            .-+.|.+|.  .+.+-++-..++-++|-.+..++.++.-.+-.+..+.-....+.++. |..+|.+
T Consensus       101 ~a------------qVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIva-GS~DGtv  167 (307)
T KOG0316|consen  101 LA------------QVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVA-GSVDGTV  167 (307)
T ss_pred             cc------------eeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEe-eccCCcE
Confidence            31            112333332  22222223346888888888777654221111111111122344442 5556665


Q ss_pred             EEEEEeec----CCccceEEEEEECCCCCEEEEecccHH----------HHHHhhhccccCCccEEEEeeCCEEEEEeec
Q 018005          263 YLIGGVGR----NGISTTMKLWELGCGGNWIEVERVPEM----------MCRKFMSVCYHNYDHVYCFWHQGMICVCCYT  328 (362)
Q Consensus       263 ~vv~~~~~----~~~~~~i~vw~l~~~~~W~~v~~~p~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  328 (362)
                      -......+    +.....|..-.+..+++-..+..|...          +...+.+..-..+..-.|+...+.+++.+..
T Consensus       168 RtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSE  247 (307)
T KOG0316|consen  168 RTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE  247 (307)
T ss_pred             EEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccC
Confidence            44433211    111222333333344555655554321          1122221110111112334455666776666


Q ss_pred             CCeEEEEECCCCc
Q 018005          329 WPEILYYNVARRT  341 (362)
Q Consensus       329 ~~~v~~yd~~~~~  341 (362)
                      .+.++.||+...+
T Consensus       248 DG~Vy~wdLvd~~  260 (307)
T KOG0316|consen  248 DGKVYFWDLVDET  260 (307)
T ss_pred             CceEEEEEeccce
Confidence            6789999998764

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.83  E-value=0.0032  Score=54.70  Aligned_cols=43  Identities=21%  Similarity=0.393  Sum_probs=37.0

Q ss_pred             hcCCCHHHHHHHHccCC-----hhhhhhhhccchhhhhhccCcccccc
Q 018005           13 WSRLPEDLLDHVLSFLP-----PKMLLKLRSTCKHFNSLLFSPSFLSK   55 (362)
Q Consensus        13 ~~~LP~dll~~IL~rLp-----~~~l~~~r~VcK~W~~~i~~~~F~~~   55 (362)
                      ++.||+|++.+||.++-     ..++.++.+|||.|+....++.|-+.
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~  154 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRL  154 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHH
Confidence            35799999999999873     58899999999999999999877554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.64  E-value=0.79  Score=39.64  Aligned_cols=119  Identities=10%  Similarity=0.165  Sum_probs=71.0

Q ss_pred             EEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc
Q 018005          105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK  183 (362)
Q Consensus       105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~  183 (362)
                      +++.-+|-|.+..-..+-+...||.++.-..+|++.. ......+..++.+   ++-. . .-....++.||+.+.+|.+
T Consensus       194 i~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig---~~wi-t-twg~g~l~rfdPs~~sW~e  268 (353)
T COG4257         194 ICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIG---RAWI-T-TWGTGSLHRFDPSVTSWIE  268 (353)
T ss_pred             eEECCCCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccC---cEEE-e-ccCCceeeEeCccccccee
Confidence            3455566555543334567778999998777777643 1111111222211   2222 1 2234589999999999998


Q ss_pred             cccCCCCccccccCCCcccEEEC--CEEEEEecCCcEEEEEEcCCCeeecCCCC
Q 018005          184 FDIDGFPSMILSQSSHQEGVFYK--GSLYFTTPEPFSIVRFDLENGIWETPNDA  235 (362)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~v~~~--G~ly~~~~~~~~i~~~D~~~~~w~~~~~p  235 (362)
                      .+   +|.    .........++  |.++.-......|..||+++++|+++..|
T Consensus       269 yp---LPg----s~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p  315 (353)
T COG4257         269 YP---LPG----SKARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP  315 (353)
T ss_pred             ee---CCC----CCCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence            86   554    11233445553  56554344556799999999999997544

>smart00612 Kelch Kelch domain

Probab=95.40  E-value=0.025  Score=34.54  Aligned_cols=27  Identities=22%  Similarity=0.411  Sum_probs=22.6

Q ss_pred             CeEEEEECCCCceEEcCCCCCCCCCCC
Q 018005          330 PEILYYNVARRTWHWLPSCPSLPHKWS  356 (362)
Q Consensus       330 ~~v~~yd~~~~~w~~~~~~~~~~~~~~  356 (362)
                      ..+++||+++++|+.++++|.....++
T Consensus        15 ~~v~~yd~~~~~W~~~~~~~~~r~~~~   41 (47)
T smart00612       15 KSVEVYDPETNKWTPLPSMPTPRSGHG   41 (47)
T ss_pred             eeEEEECCCCCeEccCCCCCCccccce
Confidence            458999999999999999988765554

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=94.93  E-value=0.046  Score=33.97  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             CCcccEEE-CCEEEEEecCC------cEEEEEEcCCCeeecC
Q 018005          198 SHQEGVFY-KGSLYFTTPEP------FSIVRFDLENGIWETP  232 (362)
Q Consensus       198 ~~~~~v~~-~G~ly~~~~~~------~~i~~~D~~~~~w~~~  232 (362)
                      ..+.++.+ ++.+|..++..      ..+..||+++++|+.+
T Consensus         3 ~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~   44 (49)
T PF13418_consen    3 YGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRL   44 (49)
T ss_dssp             BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE-
T ss_pred             ceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEEC
Confidence            45667777 68999998632      3589999999999987

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=94.67  E-value=0.035  Score=51.44  Aligned_cols=141  Identities=16%  Similarity=0.235  Sum_probs=88.9

Q ss_pred             cCCCcccEEECC--EEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEe
Q 018005          196 QSSHQEGVFYKG--SLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV  268 (362)
Q Consensus       196 ~~~~~~~v~~~G--~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~  268 (362)
                      .+..+..|...|  ++|.-++..     .....|..+.+.|+.+..-.     ..|..+.++.+|. -+...+||++|.+
T Consensus       260 ~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t-----~~PG~RsCHRMVi-d~S~~KLYLlG~Y  333 (723)
T KOG2437|consen  260 MRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDT-----EGPGARSCHRMVI-DISRRKLYLLGRY  333 (723)
T ss_pred             ccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCC-----CCCcchhhhhhhh-hhhHhHHhhhhhc
Confidence            345678888877  999888743     23678999999999864221     1677788888874 2256689999886


Q ss_pred             ecCC----ccceEEEEEECCCCC-EEEEecccHHHHHHhhh-ccccCCccEEEEeeCCEEEEEeec---C-----CeEEE
Q 018005          269 GRNG----ISTTMKLWELGCGGN-WIEVERVPEMMCRKFMS-VCYHNYDHVYCFWHQGMICVCCYT---W-----PEILY  334 (362)
Q Consensus       269 ~~~~----~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~---~-----~~v~~  334 (362)
                      -+..    ....-++|++|.+.+ |..+.- ...-.  -.+ ..+.  ..+...+..++||+.++.   .     ..+++
T Consensus       334 ~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~-dt~~d--GGP~~vfD--HqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYa  408 (723)
T KOG2437|consen  334 LDSSVRNSKSLRSDFWRFDIDTNTWMLLSE-DTAAD--GGPKLVFD--HQMCVDSEKHMIYVFGGRILTCNEPQFSGLYA  408 (723)
T ss_pred             cccccccccccccceEEEecCCceeEEecc-ccccc--CCcceeec--ceeeEecCcceEEEecCeeccCCCccccceEE
Confidence            5422    234568999987765 997632 11100  000 0011  122223555678888642   1     24899


Q ss_pred             EECCCCceEEcCC
Q 018005          335 YNVARRTWHWLPS  347 (362)
Q Consensus       335 yd~~~~~w~~~~~  347 (362)
                      ||.....|+-+.-
T Consensus       409 f~~~~~~w~~l~e  421 (723)
T KOG2437|consen  409 FNCQCQTWKLLRE  421 (723)
T ss_pred             EecCCccHHHHHH
Confidence            9999999987643

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.54  E-value=0.99  Score=39.12  Aligned_cols=151  Identities=13%  Similarity=0.019  Sum_probs=82.5

Q ss_pred             EEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCC-cccEEECCEEEEEecCCcEEEEEEcCCCee-ecCCCC
Q 018005          158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH-QEGVFYKGSLYFTTPEPFSIVRFDLENGIW-ETPNDA  235 (362)
Q Consensus       158 kv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~-~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w-~~~~~p  235 (362)
                      .++.-.|..+...+..||..+++=....  .+|.     ++. -..+.+++++|.++.+....++||..+-+- ....  
T Consensus        57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~--~l~~-----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~--  127 (264)
T PF05096_consen   57 TLYESTGLYGQSSLRKVDLETGKVLQSV--PLPP-----RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFP--  127 (264)
T ss_dssp             EEEEEECSTTEEEEEEEETTTSSEEEEE--E-TT-----T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--
T ss_pred             EEEEeCCCCCcEEEEEEECCCCcEEEEE--ECCc-----cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEe--
Confidence            4555444445568999999998654433  3443     233 345677999999999888999999986322 2211  


Q ss_pred             CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE
Q 018005          236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC  315 (362)
Q Consensus       236 ~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~  315 (362)
                             .+  .+...|..   -+..|++-.|      ...  ++.+|+.+ .+.+.++....    .+......+.+.+
T Consensus       128 -------y~--~EGWGLt~---dg~~Li~SDG------S~~--L~~~dP~~-f~~~~~i~V~~----~g~pv~~LNELE~  182 (264)
T PF05096_consen  128 -------YP--GEGWGLTS---DGKRLIMSDG------SSR--LYFLDPET-FKEVRTIQVTD----NGRPVSNLNELEY  182 (264)
T ss_dssp             --------S--SS--EEEE---CSSCEEEE-S------SSE--EEEE-TTT--SEEEEEE-EE----TTEE---EEEEEE
T ss_pred             -------cC--CcceEEEc---CCCEEEEECC------ccc--eEEECCcc-cceEEEEEEEE----CCEECCCcEeEEE
Confidence                   23  24456652   3444665554      233  44455433 33333332110    0001112344555


Q ss_pred             EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          316 FWHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                      +  ++.||.--..++.|+.-|+++++-..
T Consensus       183 i--~G~IyANVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  183 I--NGKIYANVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             E--TTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred             E--cCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence            4  67888877778889999999987665

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.43  E-value=2.8  Score=35.67  Aligned_cols=187  Identities=14%  Similarity=0.166  Sum_probs=97.1

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCC--cccc-cc
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSK-FD  185 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~-~~  185 (362)
                      .+|.+++.. ..+.++.+|+.|++-..--..+.+..... .....    ++++..   ....+..+|..++  .|+. ..
T Consensus        35 ~~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~----~v~v~~---~~~~l~~~d~~tG~~~W~~~~~  105 (238)
T PF13360_consen   35 DGGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGG----RVYVGT---SDGSLYALDAKTGKVLWSIYLT  105 (238)
T ss_dssp             ETTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETT----EEEEEE---TTSEEEEEETTTSCEEEEEEE-
T ss_pred             eCCEEEEEc-CCCEEEEEECCCCCEEEEeecccccccee-eeccc----cccccc---ceeeeEecccCCcceeeeeccc
Confidence            566666663 36889999999998433222222211111 12211    444433   2237888886665  5984 43


Q ss_pred             cCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCccc--------ccceeec
Q 018005          186 IDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELT--------FFRLVND  255 (362)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~--------~~~lv~~  255 (362)
                        ..+.  ..........+.++.+|+.... ..+.++|++++  .|..-. .       .|....        ...++. 
T Consensus       106 --~~~~--~~~~~~~~~~~~~~~~~~~~~~-g~l~~~d~~tG~~~w~~~~-~-------~~~~~~~~~~~~~~~~~~~~-  171 (238)
T PF13360_consen  106 --SSPP--AGVRSSSSPAVDGDRLYVGTSS-GKLVALDPKTGKLLWKYPV-G-------EPRGSSPISSFSDINGSPVI-  171 (238)
T ss_dssp             --SSCT--CSTB--SEEEEETTEEEEEETC-SEEEEEETTTTEEEEEEES-S-------TT-SS--EEEETTEEEEEEC-
T ss_pred             --cccc--cccccccCceEecCEEEEEecc-CcEEEEecCCCcEEEEeec-C-------CCCCCcceeeecccccceEE-
Confidence              2122  1111223344446677765543 47999999865  565521 2       222111        123332 


Q ss_pred             ccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEE
Q 018005          256 GEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY  334 (362)
Q Consensus       256 ~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~  334 (362)
                        .+|.+|+....   +  ..+.+ ++..... |+..  +.             . ........++.+|+.. ..+.+.+
T Consensus       172 --~~~~v~~~~~~---g--~~~~~-d~~tg~~~w~~~--~~-------------~-~~~~~~~~~~~l~~~~-~~~~l~~  226 (238)
T PF13360_consen  172 --SDGRVYVSSGD---G--RVVAV-DLATGEKLWSKP--IS-------------G-IYSLPSVDGGTLYVTS-SDGRLYA  226 (238)
T ss_dssp             --CTTEEEEECCT---S--SEEEE-ETTTTEEEEEEC--SS---------------ECECEECCCTEEEEEE-TTTEEEE
T ss_pred             --ECCEEEEEcCC---C--eEEEE-ECCCCCEEEEec--CC-------------C-ccCCceeeCCEEEEEe-CCCEEEE
Confidence              46777776541   1  22344 5532222 8422  21             0 0111345678888877 6789999


Q ss_pred             EECCCCceE
Q 018005          335 YNVARRTWH  343 (362)
Q Consensus       335 yd~~~~~w~  343 (362)
                      +|+++++-.
T Consensus       227 ~d~~tG~~~  235 (238)
T PF13360_consen  227 LDLKTGKVV  235 (238)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCCEE
Confidence            999998544

...

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=94.43  E-value=0.17  Score=31.46  Aligned_cols=28  Identities=18%  Similarity=-0.046  Sum_probs=22.6

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceE
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELL  148 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~  148 (362)
                      +.++++|+.+++|.+++.+|.++..+.+
T Consensus        19 nd~~~~~~~~~~W~~~~~~P~~R~~h~~   46 (49)
T PF13415_consen   19 NDVWVFDLDTNTWTRIGDLPPPRSGHTA   46 (49)
T ss_pred             cCEEEEECCCCEEEECCCCCCCccceEE
Confidence            5789999999999999887776655443

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=93.89  E-value=2.5  Score=36.05  Aligned_cols=148  Identities=17%  Similarity=0.235  Sum_probs=74.0

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecC----CCC-eEEEEeCCcCceee-ccCCCCCC-ccceE
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP----SSS-SFLVCNLVTLSSRT-IDFPTYPF-DFELL  148 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~----~~~-~~~v~NP~t~~w~~-lP~~~~~~-~~~~~  148 (362)
                      ..+..|+..+++|..+..+.........  -...+|.++....    ... .+..+|..+.+|.. +|.|.... .....
T Consensus        70 ~~~~Vys~~~~~Wr~~~~~~~~~~~~~~--~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~  147 (230)
T TIGR01640        70 SEHQVYTLGSNSWRTIECSPPHHPLKSR--GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYL  147 (230)
T ss_pred             ccEEEEEeCCCCccccccCCCCccccCC--eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccce
Confidence            3567899999999988632111111111  2345775544321    112 68889999999994 76553321 11111


Q ss_pred             EEEeCCCceEEEEEeeecCCCeEEEEeCC---CCcccccccCCCCc-cccccCCCcccEEECCEEEEEecC--CcEEEEE
Q 018005          149 TLVSTPSGYKIFMLFAKSFPNYAFVYDST---DQSWSKFDIDGFPS-MILSQSSHQEGVFYKGSLYFTTPE--PFSIVRF  222 (362)
Q Consensus       149 ~~~~~~~~ykv~~~~~~~~~~~~~vy~s~---~~~W~~~~~~~~p~-~~~~~~~~~~~v~~~G~ly~~~~~--~~~i~~~  222 (362)
                      .+..-.  .++..+........++++-.+   .+.|+..-...++. ..........++..+|.+......  ...++.|
T Consensus       148 ~L~~~~--G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y  225 (230)
T TIGR01640       148 SLINYK--GKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYY  225 (230)
T ss_pred             EEEEEC--CEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCCCceEEEEE
Confidence            222111  134433332222335665553   56797543112211 011111112345567888877654  3348899


Q ss_pred             EcCCC
Q 018005          223 DLENG  227 (362)
Q Consensus       223 D~~~~  227 (362)
                      |++++
T Consensus       226 ~~~~~  230 (230)
T TIGR01640       226 NVGEN  230 (230)
T ss_pred             eccCC
Confidence            98763

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=93.76  E-value=1.7  Score=39.76  Aligned_cols=134  Identities=11%  Similarity=0.042  Sum_probs=74.5

Q ss_pred             CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccc-----eEEEE
Q 018005          206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST-----TMKLW  280 (362)
Q Consensus       206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~-----~i~vw  280 (362)
                      +.+|..+.... ..++||+++......  |.      ++......-.+ .  .+|+||++..........     .+++.
T Consensus        76 gskIv~~d~~~-~t~vyDt~t~av~~~--P~------l~~pk~~pisv-~--VG~~LY~m~~~~~~~~~~~~~~~~FE~l  143 (342)
T PF07893_consen   76 GSKIVAVDQSG-RTLVYDTDTRAVATG--PR------LHSPKRCPISV-S--VGDKLYAMDRSPFPEPAGRPDFPCFEAL  143 (342)
T ss_pred             CCeEEEEcCCC-CeEEEECCCCeEecc--CC------CCCCCcceEEE-E--eCCeEEEeeccCccccccCccceeEEEe
Confidence            56777665544 478899999887753  31      33322233233 3  789999998864321111     66666


Q ss_pred             EECC-------CCC--EEEEecccHHHHHHhhhccccCC-ccEEEEeeCCEEEEEeec-CCeEEEEECCCCceEEc--CC
Q 018005          281 ELGC-------GGN--WIEVERVPEMMCRKFMSVCYHNY-DHVYCFWHQGMICVCCYT-WPEILYYNVARRTWHWL--PS  347 (362)
Q Consensus       281 ~l~~-------~~~--W~~v~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~-~~~v~~yd~~~~~w~~~--~~  347 (362)
                      ..+.       ...  |..+..   ..+.....  .... ...+++.+|..|++.... ....++||..+++|+++  =.
T Consensus       144 ~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~--~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~  218 (342)
T PF07893_consen  144 VYRPPPDDPSPEESWSWRSLPP---PPFVRDRR--YSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWM  218 (342)
T ss_pred             ccccccccccCCCcceEEcCCC---CCccccCC--cccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeecccee
Confidence            4431       112  776443   22211110  0000 112233346788886432 12589999999999998  56


Q ss_pred             CCCCCCCCC
Q 018005          348 CPSLPHKWS  356 (362)
Q Consensus       348 ~~~~~~~~~  356 (362)
                      +||.+...+
T Consensus       219 LPF~G~a~y  227 (342)
T PF07893_consen  219 LPFHGQAEY  227 (342)
T ss_pred             cCcCCccEE
Confidence            777665544

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=93.35  E-value=3  Score=38.14  Aligned_cols=122  Identities=15%  Similarity=0.163  Sum_probs=68.5

Q ss_pred             eEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCC--C------eEEEE
Q 018005          103 ATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP--N------YAFVY  174 (362)
Q Consensus       103 ~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~--~------~~~vy  174 (362)
                      +.+.+..+..|+.... .....+||+.|..-..+|.+..+.... +.+.. ++  +++++......  .      .+|++
T Consensus        69 ~~F~al~gskIv~~d~-~~~t~vyDt~t~av~~~P~l~~pk~~p-isv~V-G~--~LY~m~~~~~~~~~~~~~~~~FE~l  143 (342)
T PF07893_consen   69 MDFFALHGSKIVAVDQ-SGRTLVYDTDTRAVATGPRLHSPKRCP-ISVSV-GD--KLYAMDRSPFPEPAGRPDFPCFEAL  143 (342)
T ss_pred             eEEEEecCCeEEEEcC-CCCeEEEECCCCeEeccCCCCCCCcce-EEEEe-CC--eEEEeeccCccccccCccceeEEEe
Confidence            3344443344433332 367999999999999999877654443 22221 11  47776654211  0      44554


Q ss_pred             --e--------CCCCcccccccCCCCccccccCC----CcccEEECCEEEEEecCCc--EEEEEEcCCCeeecC
Q 018005          175 --D--------STDQSWSKFDIDGFPSMILSQSS----HQEGVFYKGSLYFTTPEPF--SIVRFDLENGIWETP  232 (362)
Q Consensus       175 --~--------s~~~~W~~~~~~~~p~~~~~~~~----~~~~v~~~G~ly~~~~~~~--~i~~~D~~~~~w~~~  232 (362)
                        +        .++-.|+.++  . |+.......    ...-++++|.-.|+...+.  .-.+||+.+.+|+..
T Consensus       144 ~~~~~~~~~~~~~~w~W~~LP--~-PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~  214 (342)
T PF07893_consen  144 VYRPPPDDPSPEESWSWRSLP--P-PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKH  214 (342)
T ss_pred             ccccccccccCCCcceEEcCC--C-CCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeec
Confidence              4        1233577776  3 331111111    2223344787777755443  679999999999986

>PLN02772 guanylate kinase

Probab=93.18  E-value=0.66  Score=42.71  Aligned_cols=77  Identities=13%  Similarity=0.190  Sum_probs=50.6

Q ss_pred             CCcccEEECCEEEEEecCC------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005          198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN  271 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~~------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~  271 (362)
                      ..+.++.+++++|+.++..      ..+.+||..+.+|.....-+.     .|..+..++.++.  -+++|+|+....  
T Consensus        26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~-----~P~~r~GhSa~v~--~~~rilv~~~~~--   96 (398)
T PLN02772         26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGT-----GPKPCKGYSAVVL--NKDRILVIKKGS--   96 (398)
T ss_pred             CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCC-----CCCCCCcceEEEE--CCceEEEEeCCC--
Confidence            3567899999999998632      368999999999987532211     3444444433322  589999998732  


Q ss_pred             CccceEEEEEECCC
Q 018005          272 GISTTMKLWELGCG  285 (362)
Q Consensus       272 ~~~~~i~vw~l~~~  285 (362)
                        ...-.+|-|+-+
T Consensus        97 --~~~~~~w~l~~~  108 (398)
T PLN02772         97 --APDDSIWFLEVD  108 (398)
T ss_pred             --CCccceEEEEcC
Confidence              233567777533

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=93.07  E-value=0.95  Score=38.93  Aligned_cols=88  Identities=8%  Similarity=0.025  Sum_probs=56.1

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-CCCeEEEEeCCC----CcccccccCCCCccccc
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-FPNYAFVYDSTD----QSWSKFDIDGFPSMILS  195 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-~~~~~~vy~s~~----~~W~~~~~~~~p~~~~~  195 (362)
                      ..-.+|||.|++++.++......+..+. +..+   .+++.+||.. ....+.+|++.+    ..|.+... .|..   .
T Consensus        46 a~s~~yD~~tn~~rpl~v~td~FCSgg~-~L~d---G~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~-~m~~---~  117 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQTDTFCSGGA-FLPD---GRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPN-DMQS---G  117 (243)
T ss_pred             EEEEEEecCCCcEEeccCCCCCcccCcC-CCCC---CCEEEeCCCCccccceEEEecCCCCCCCCceECcc-cccC---C
Confidence            4568899999999988765433333221 2222   3677777754 345788898865    67887762 2332   2


Q ss_pred             cCCCcccEEECCEEEEEecCC
Q 018005          196 QSSHQEGVFYKGSLYFTTPEP  216 (362)
Q Consensus       196 ~~~~~~~v~~~G~ly~~~~~~  216 (362)
                      +.+....+.-||++.++++..
T Consensus       118 RWYpT~~~L~DG~vlIvGG~~  138 (243)
T PF07250_consen  118 RWYPTATTLPDGRVLIVGGSN  138 (243)
T ss_pred             CccccceECCCCCEEEEeCcC
Confidence            334444455599999998865

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=92.74  E-value=8.5  Score=35.89  Aligned_cols=187  Identities=11%  Similarity=0.119  Sum_probs=97.1

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCc--eeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc--cccc
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKF  184 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~--W~~~  184 (362)
                      .+|.|++.. .++.++.+|+.|++  |..-... .....+.  +..    -+|++..   ....++.+|.++++  |+..
T Consensus       119 ~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~--v~~----~~v~v~~---~~g~l~ald~~tG~~~W~~~  187 (394)
T PRK11138        119 AGGKVYIGS-EKGQVYALNAEDGEVAWQTKVAG-EALSRPV--VSD----GLVLVHT---SNGMLQALNESDGAVKWTVN  187 (394)
T ss_pred             ECCEEEEEc-CCCEEEEEECCCCCCcccccCCC-ceecCCE--EEC----CEEEEEC---CCCEEEEEEccCCCEeeeec
Confidence            466666654 35689999999998  5432111 0011111  111    1344322   23478889987765  8876


Q ss_pred             ccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecC-CCCC-c-ccccCCCCcccccceeecccCC
Q 018005          185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETP-NDAN-D-HMTMMLPHELTFFRLVNDGEES  259 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~-~~p~-~-~~~~~~p~~~~~~~lv~~~~~~  259 (362)
                      .  ..|.  ...+....++..+|.+|+....+ .+.++|+++.  .|+.- ..|. . .... +. ......++    .+
T Consensus       188 ~--~~~~--~~~~~~~sP~v~~~~v~~~~~~g-~v~a~d~~~G~~~W~~~~~~~~~~~~~~~-~~-~~~~sP~v----~~  256 (394)
T PRK11138        188 L--DVPS--LTLRGESAPATAFGGAIVGGDNG-RVSAVLMEQGQLIWQQRISQPTGATEIDR-LV-DVDTTPVV----VG  256 (394)
T ss_pred             C--CCCc--ccccCCCCCEEECCEEEEEcCCC-EEEEEEccCChhhheeccccCCCccchhc-cc-ccCCCcEE----EC
Confidence            5  3332  11112345677788888766554 6889999865  57641 1110 0 0000 00 00112233    57


Q ss_pred             CeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECC
Q 018005          260 NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVA  338 (362)
Q Consensus       260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~  338 (362)
                      |.||+...      ...+...+....+. |+.-  .+             ....  .+..++.||+.. ..+.+++.|.+
T Consensus       257 ~~vy~~~~------~g~l~ald~~tG~~~W~~~--~~-------------~~~~--~~~~~~~vy~~~-~~g~l~ald~~  312 (394)
T PRK11138        257 GVVYALAY------NGNLVALDLRSGQIVWKRE--YG-------------SVND--FAVDGGRIYLVD-QNDRVYALDTR  312 (394)
T ss_pred             CEEEEEEc------CCeEEEEECCCCCEEEeec--CC-------------CccC--cEEECCEEEEEc-CCCeEEEEECC
Confidence            88887654      13444444432222 8742  11             0011  234567888865 45689999998


Q ss_pred             CCc
Q 018005          339 RRT  341 (362)
Q Consensus       339 ~~~  341 (362)
                      +++
T Consensus       313 tG~  315 (394)
T PRK11138        313 GGV  315 (394)
T ss_pred             CCc
Confidence            874

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=91.61  E-value=0.35  Score=45.11  Aligned_cols=159  Identities=15%  Similarity=0.159  Sum_probs=88.7

Q ss_pred             EeCCcCceeeccCCCC--------CCccceEEEEeCCCceEEEEEeeecCCC---eEEEEeCCCCcccccccCC-CCccc
Q 018005          126 CNLVTLSSRTIDFPTY--------PFDFELLTLVSTPSGYKIFMLFAKSFPN---YAFVYDSTDQSWSKFDIDG-FPSMI  193 (362)
Q Consensus       126 ~NP~t~~w~~lP~~~~--------~~~~~~~~~~~~~~~ykv~~~~~~~~~~---~~~vy~s~~~~W~~~~~~~-~p~~~  193 (362)
                      =-|.+-.|.++|+-..        +-.+.+.-++.....-.|+..||..+..   .+..|..+.+.|....... .|.  
T Consensus       234 q~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG--  311 (723)
T KOG2437|consen  234 QQEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPG--  311 (723)
T ss_pred             cccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCc--
Confidence            3466777888876531        1123344444333444788887765433   6788999999998876311 222  


Q ss_pred             cccCCCcccEEECC--EEEEEecC-----------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCC
Q 018005          194 LSQSSHQEGVFYKG--SLYFTTPE-----------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESN  260 (362)
Q Consensus       194 ~~~~~~~~~v~~~G--~ly~~~~~-----------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G  260 (362)
                        .+.-++.|..-.  ++|.++..           +..+..||.+++.|..+... +.-++ -|.....+.+++. +-+|
T Consensus       312 --~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~d-t~~dG-GP~~vfDHqM~Vd-~~k~  386 (723)
T KOG2437|consen  312 --ARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSED-TAADG-GPKLVFDHQMCVD-SEKH  386 (723)
T ss_pred             --chhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEeccc-ccccC-CcceeecceeeEe-cCcc
Confidence              223345555433  88888641           23589999999999886422 00001 2333445666641 1344


Q ss_pred             eEEEEEEeecCCcc-ceEEEEEECCCCC-EEEE
Q 018005          261 KLYLIGGVGRNGIS-TTMKLWELGCGGN-WIEV  291 (362)
Q Consensus       261 ~L~vv~~~~~~~~~-~~i~vw~l~~~~~-W~~v  291 (362)
                      -|||.||.--+... .--.+|-++-.+. |...
T Consensus       387 ~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l  419 (723)
T KOG2437|consen  387 MIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL  419 (723)
T ss_pred             eEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence            49999885432221 1123444454454 7754

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=91.12  E-value=11  Score=33.94  Aligned_cols=195  Identities=10%  Similarity=0.038  Sum_probs=89.4

Q ss_pred             EEecCCCCeEEEEeCCc-CceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCC-CCcccccccCCCCc
Q 018005          114 CFSLPSSSSFLVCNLVT-LSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST-DQSWSKFDIDGFPS  191 (362)
Q Consensus       114 ~~~~~~~~~~~v~NP~t-~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~p~  191 (362)
                      |+....++.+.+|+..+ ++...+...+.......+++.+.+.  .+++...  ....+.+|+.. ++++....  ..+.
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~--~lyv~~~--~~~~i~~~~~~~~g~l~~~~--~~~~   78 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKR--HLYVGVR--PEFRVLSYRIADDGALTFAA--ESPL   78 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCC--EEEEEEC--CCCcEEEEEECCCCceEEee--eecC
Confidence            44433456677777753 4444333222111122334443321  3333322  23567777775 45665444  2221


Q ss_pred             cccccCCCcccEEE--CCE-EEEEecCCcEEEEEEcCCCe-ee-cCCCCCcccccCCCCcccccceeecccCCCeEEEEE
Q 018005          192 MILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGI-WE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIG  266 (362)
Q Consensus       192 ~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D~~~~~-w~-~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~  266 (362)
                         .  .....+.+  +|+ +|........+.+||+.++. .. .+. .       .+.....+.+...  -+|+..++.
T Consensus        79 ---~--~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~-------~~~~~~~~~~~~~--p~g~~l~v~  143 (330)
T PRK11028         79 ---P--GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQ-I-------IEGLEGCHSANID--PDNRTLWVP  143 (330)
T ss_pred             ---C--CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCcee-e-------ccCCCcccEeEeC--CCCCEEEEe
Confidence               0  11223333  465 55544445678999986431 11 111 0       1111111222212  466544443


Q ss_pred             EeecCCccceEEEEEECCCCCEEEE----ecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeecCCeEEEEECC--C
Q 018005          267 GVGRNGISTTMKLWELGCGGNWIEV----ERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVA--R  339 (362)
Q Consensus       267 ~~~~~~~~~~i~vw~l~~~~~W~~v----~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~--~  339 (362)
                      .    .....+.||+++..+.-...    .+++.           +.......+ .++..+|+.....+.+.+||++  +
T Consensus       144 ~----~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-----------g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~  208 (330)
T PRK11028        144 C----LKEDRIRLFTLSDDGHLVAQEPAEVTTVE-----------GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPH  208 (330)
T ss_pred             e----CCCCEEEEEEECCCCcccccCCCceecCC-----------CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence            3    23578999999753332211    01110           111111222 3456788877667889999987  3


Q ss_pred             CceEE
Q 018005          340 RTWHW  344 (362)
Q Consensus       340 ~~w~~  344 (362)
                      ++.+.
T Consensus       209 ~~~~~  213 (330)
T PRK11028        209 GEIEC  213 (330)
T ss_pred             CCEEE
Confidence            45444

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=90.45  E-value=13  Score=33.53  Aligned_cols=224  Identities=9%  Similarity=0.012  Sum_probs=108.8

Q ss_pred             EEecCCc-eEEEecCCCCeEEEEeCCcCc-e-eeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC-Cc
Q 018005          105 LLSSSKG-LLCFSLPSSSSFLVCNLVTLS-S-RTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD-QS  180 (362)
Q Consensus       105 ~~~s~~G-ll~~~~~~~~~~~v~NP~t~~-w-~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~-~~  180 (362)
                      +..+.+| .+++....++.+.+|+..+.. . ..+...+.......+++.+++ . .+++...  ....+.+||..+ +.
T Consensus        85 i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g-~-~l~v~~~--~~~~v~v~d~~~~g~  160 (330)
T PRK11028         85 ISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN-R-TLWVPCL--KEDRIRLFTLSDDGH  160 (330)
T ss_pred             EEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC-C-EEEEeeC--CCCEEEEEEECCCCc
Confidence            3344444 666665446788888875421 1 111111111112233343332 2 2333222  345889999876 32


Q ss_pred             cccccc--CCCCccccccCCCcccEEE-CC-EEEEEecCCcEEEEEEcC--CCeeecCC-CCCcccccCCCCcc----cc
Q 018005          181 WSKFDI--DGFPSMILSQSSHQEGVFY-KG-SLYFTTPEPFSIVRFDLE--NGIWETPN-DANDHMTMMLPHEL----TF  249 (362)
Q Consensus       181 W~~~~~--~~~p~~~~~~~~~~~~v~~-~G-~ly~~~~~~~~i~~~D~~--~~~w~~~~-~p~~~~~~~~p~~~----~~  249 (362)
                      -.....  ...+.    .......++. +| .+|........+.+||..  +++++.+. ...      +|...    ..
T Consensus       161 l~~~~~~~~~~~~----g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~------~p~~~~~~~~~  230 (330)
T PRK11028        161 LVAQEPAEVTTVE----GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM------MPADFSDTRWA  230 (330)
T ss_pred             ccccCCCceecCC----CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec------CCCcCCCCccc
Confidence            221100  01111    1111122333 34 566666656689999986  34443321 010      22211    11


Q ss_pred             cceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEee
Q 018005          250 FRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY  327 (362)
Q Consensus       250 ~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  327 (362)
                      ..+...  -+|+ ||+...     ....+.+|+++.++. ++.+..++...    .     . ..+..-..+..+|+...
T Consensus       231 ~~i~~~--pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~~~~~~----~-----p-~~~~~~~dg~~l~va~~  293 (330)
T PRK11028        231 ADIHIT--PDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGHQPTET----Q-----P-RGFNIDHSGKYLIAAGQ  293 (330)
T ss_pred             eeEEEC--CCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEEEeccc----c-----C-CceEECCCCCEEEEEEc
Confidence            112211  4566 555422     347899999976653 77776654221    0     0 12222245678888776


Q ss_pred             cCCeEEEEEC--CCCceEEcCCCCCCCCCCCcce
Q 018005          328 TWPEILYYNV--ARRTWHWLPSCPSLPHKWSCGF  359 (362)
Q Consensus       328 ~~~~v~~yd~--~~~~w~~~~~~~~~~~~~~~~~  359 (362)
                      ..+.+.+|+.  +++.++.+...+.......+.|
T Consensus       294 ~~~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        294 KSHHISVYEIDGETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             cCCcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence            6677888865  5678888877666555544433

>PF13854 Kelch_5: Kelch motif

Probab=89.84  E-value=0.54  Score=28.06  Aligned_cols=37  Identities=27%  Similarity=0.345  Sum_probs=23.0

Q ss_pred             CCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005          244 PHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG  283 (362)
Q Consensus       244 p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~  283 (362)
                      |..+..+..+.   .+++||+.||.........-++|.|+
T Consensus         2 P~~R~~hs~~~---~~~~iyi~GG~~~~~~~~~~d~~~l~   38 (42)
T PF13854_consen    2 PSPRYGHSAVV---VGNNIYIFGGYSGNNNSYSNDLYVLD   38 (42)
T ss_pred             CCCccceEEEE---ECCEEEEEcCccCCCCCEECcEEEEE
Confidence            44455566663   78999999997631122334677775

>smart00284 OLF Olfactomedin-like domains

Probab=89.47  E-value=13  Score=32.21  Aligned_cols=133  Identities=19%  Similarity=0.224  Sum_probs=75.7

Q ss_pred             CCcccEEECCEEEEEecCCcEEEEEEcCCCeeecC-CCCCcccccCCCC---cccccceeecccCCCeEEEEEEeecCCc
Q 018005          198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETP-NDANDHMTMMLPH---ELTFFRLVNDGEESNKLYLIGGVGRNGI  273 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~-~~p~~~~~~~~p~---~~~~~~lv~~~~~~G~L~vv~~~~~~~~  273 (362)
                      ....-|+.||.+|+-......|+.||+.+++-... ..|.--.....|-   +....-+.+   =+..|.+|-...  ..
T Consensus        75 ~GtG~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAv---DE~GLWvIYat~--~~  149 (255)
T smart00284       75 QGTGVVVYNGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAV---DENGLWVIYATE--QN  149 (255)
T ss_pred             ccccEEEECceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEE---cCCceEEEEecc--CC
Confidence            34567888999999876666899999999877421 2221000000111   122344553   467799887743  23


Q ss_pred             cceEEEEEECCCC-----CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEee-c--CCe-EEEEECCCCceEE
Q 018005          274 STTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCY-T--WPE-ILYYNVARRTWHW  344 (362)
Q Consensus       274 ~~~i~vw~l~~~~-----~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~--~~~-v~~yd~~~~~w~~  344 (362)
                      ...|.|=+||+.+     +|.-  ..+.             ...-.++...|.+|+... .  ..+ ..+||..+++- .
T Consensus       150 ~g~ivvSkLnp~tL~ve~tW~T--~~~k-------------~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~-~  213 (255)
T smart00284      150 AGKIVISKLNPATLTIENTWIT--TYNK-------------RSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKE-G  213 (255)
T ss_pred             CCCEEEEeeCcccceEEEEEEc--CCCc-------------ccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCcc-c
Confidence            3667777887654     2763  2221             111234445577887752 1  112 58999998863 3


Q ss_pred             cCCCCCC
Q 018005          345 LPSCPSL  351 (362)
Q Consensus       345 ~~~~~~~  351 (362)
                      .+..|+.
T Consensus       214 ~~~i~f~  220 (255)
T smart00284      214 HLDIPFE  220 (255)
T ss_pred             eeeeeec
Confidence            4556654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=89.40  E-value=17  Score=33.42  Aligned_cols=181  Identities=14%  Similarity=0.168  Sum_probs=88.7

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC---CcccccccCCCCccccccC
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD---QSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~---~~W~~~~~~~~p~~~~~~~  197 (362)
                      ..+..||..|++-..+=+-........-+..++  .++++ .|+  ....+..+|...   +.|+-..   .|.      
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pD--g~~~V-~Gs--~dr~i~~wdlDgn~~~~W~gvr---~~~------  356 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPD--GFRFV-TGS--PDRTIIMWDLDGNILGNWEGVR---DPK------  356 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccC--CceeE-ecC--CCCcEEEecCCcchhhcccccc---cce------
Confidence            456778888887554322221111111122222  23322 222  124566666643   6787664   232      


Q ss_pred             CCcccEEECCEEEEEecCCcEEEEEEcCCCeee-cCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccce
Q 018005          198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTT  276 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~  276 (362)
                      ...-++..+|+-..+......+..|+.++..=. .+.         .-.......+.    -+|++.++..     ....
T Consensus       357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis---------e~~~its~~iS----~d~k~~LvnL-----~~qe  418 (519)
T KOG0293|consen  357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS---------EEQPITSFSIS----KDGKLALVNL-----QDQE  418 (519)
T ss_pred             eEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc---------ccCceeEEEEc----CCCcEEEEEc-----ccCe
Confidence            122234446643333333335777776653222 211         11122233443    6899999876     3478


Q ss_pred             EEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCC-EEEEEeecCCeEEEEECCCCceEE
Q 018005          277 MKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQG-MICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       277 i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                      +.+|+++   .|..+        .++++..-+.+..-.|+|.+| ..++.+....+|+.||.++++--.
T Consensus       419 i~LWDl~---e~~lv--------~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~  476 (519)
T KOG0293|consen  419 IHLWDLE---ENKLV--------RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA  476 (519)
T ss_pred             eEEeecc---hhhHH--------HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE
Confidence            9999885   23322        234443222333345665554 333433344578888887765443

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=88.56  E-value=19  Score=32.84  Aligned_cols=248  Identities=13%  Similarity=0.105  Sum_probs=114.8

Q ss_pred             eeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecC---CCCeEEE--EeCCcCceeeccCCCC-CCccceEEEEe
Q 018005           79 PLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP---SSSSFLV--CNLVTLSSRTIDFPTY-PFDFELLTLVS  152 (362)
Q Consensus        79 ~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~---~~~~~~v--~NP~t~~w~~lP~~~~-~~~~~~~~~~~  152 (362)
                      ..||...+.+..+..- ..........+...+..||....   ....+..  .++.+++...+...+. ...-+.+++++
T Consensus        18 ~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~   96 (345)
T PF10282_consen   18 FRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP   96 (345)
T ss_dssp             EEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT
T ss_pred             EEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec
Confidence            3456677776655321 00112233334445556766654   2344444  4555566665544332 12223344433


Q ss_pred             CCCceEEEEEeeecCCCeEEEEeCCCC-cccccc-cC----CCCccccccCCCcccEEE--CCE-EEEEecCCcEEEEEE
Q 018005          153 TPSGYKIFMLFAKSFPNYAFVYDSTDQ-SWSKFD-ID----GFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFD  223 (362)
Q Consensus       153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~-~W~~~~-~~----~~p~~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D  223 (362)
                      . ..| +++...  ....+.+|+..++ .=.... ..    .-|........+...+..  +|+ +|+..-....|.+|+
T Consensus        97 ~-g~~-l~vany--~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   97 D-GRF-LYVANY--GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             T-SSE-EEEEET--TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             C-CCE-EEEEEc--cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence            2 233 333332  2356777777653 111110 00    000000001112223333  454 555444456899999


Q ss_pred             cCCCe--eecCC-CCCcccccCCCCcccccceeecccCCCe-EEEEEEeecCCccceEEEEEECC-CCCEEEEecccHHH
Q 018005          224 LENGI--WETPN-DANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGC-GGNWIEVERVPEMM  298 (362)
Q Consensus       224 ~~~~~--w~~~~-~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~-~~~W~~v~~~p~~~  298 (362)
                      .+.+.  ..... ..       +|.+..-.+++.-  -+|+ +|++..     ...++.++.++. .+.++.+.+++...
T Consensus       173 ~~~~~~~l~~~~~~~-------~~~G~GPRh~~f~--pdg~~~Yv~~e-----~s~~v~v~~~~~~~g~~~~~~~~~~~~  238 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIK-------VPPGSGPRHLAFS--PDGKYAYVVNE-----LSNTVSVFDYDPSDGSLTEIQTISTLP  238 (345)
T ss_dssp             E-TTS-TEEEEEEEE-------CSTTSSEEEEEE---TTSSEEEEEET-----TTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred             EeCCCceEEEeeccc-------cccCCCCcEEEEc--CCcCEEEEecC-----CCCcEEEEeecccCCceeEEEEeeecc
Confidence            87655  43311 01       3333333334421  4555 666653     568899999973 34566655443110


Q ss_pred             HHHhhhccccCCc-cEEEEeeCCEEEEEeecCCeEEEEEC--CCCceEEcCCCC
Q 018005          299 CRKFMSVCYHNYD-HVYCFWHQGMICVCCYTWPEILYYNV--ARRTWHWLPSCP  349 (362)
Q Consensus       299 ~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~v~~yd~--~~~~w~~~~~~~  349 (362)
                      . .+..   .... .+..--++..+|+..+..+.|.+|++  ++++.+.+...+
T Consensus       239 ~-~~~~---~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~  288 (345)
T PF10282_consen  239 E-GFTG---ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP  288 (345)
T ss_dssp             T-TSCS---SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE
T ss_pred             c-cccc---cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe
Confidence            0 1110   0011 11211356789999888889999998  345666654443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=88.21  E-value=16  Score=31.63  Aligned_cols=132  Identities=17%  Similarity=0.178  Sum_probs=74.6

Q ss_pred             CcccEEECCEEEEEecCCcEEEEEEcCCCeee-cCCCCCcccccCCC---CcccccceeecccCCCeEEEEEEeecCCcc
Q 018005          199 HQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDANDHMTMMLP---HELTFFRLVNDGEESNKLYLIGGVGRNGIS  274 (362)
Q Consensus       199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p~~~~~~~~p---~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~  274 (362)
                      ...-|+.||.+|+-......|+.||+.++.-. ....|.--.....|   .+....-+.+   =+..|.+|-....  ..
T Consensus        71 GtG~vVYngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~Av---DE~GLWvIYat~~--~~  145 (250)
T PF02191_consen   71 GTGHVVYNGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAV---DENGLWVIYATED--NN  145 (250)
T ss_pred             cCCeEEECCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEE---cCCCEEEEEecCC--CC
Confidence            45667889999999877778999999988666 33333100000011   1112234543   4667888877432  22


Q ss_pred             ceEEEEEECCCC-----CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC---Ce-EEEEECCCCceEEc
Q 018005          275 TTMKLWELGCGG-----NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---PE-ILYYNVARRTWHWL  345 (362)
Q Consensus       275 ~~i~vw~l~~~~-----~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~-v~~yd~~~~~w~~~  345 (362)
                      ..+.|=+||+..     +|.-  +++..             ..-.++...|.+|+.....   .+ ..+||+.+++-+. 
T Consensus       146 g~ivvskld~~tL~v~~tw~T--~~~k~-------------~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~-  209 (250)
T PF02191_consen  146 GNIVVSKLDPETLSVEQTWNT--SYPKR-------------SAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEED-  209 (250)
T ss_pred             CcEEEEeeCcccCceEEEEEe--ccCch-------------hhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceec-
Confidence            457777887654     2762  22211             1123444557777765432   22 4888888876653 


Q ss_pred             CCCCCC
Q 018005          346 PSCPSL  351 (362)
Q Consensus       346 ~~~~~~  351 (362)
                      +..|+.
T Consensus       210 ~~i~f~  215 (250)
T PF02191_consen  210 VSIPFP  215 (250)
T ss_pred             eeeeec
Confidence            445543

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=88.09  E-value=22  Score=33.05  Aligned_cols=195  Identities=9%  Similarity=0.044  Sum_probs=97.2

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCc--eee-ccCCCCC--Cc-----cceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLS--SRT-IDFPTYP--FD-----FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD  178 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~--w~~-lP~~~~~--~~-----~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~  178 (362)
                      .+|.|++... .+.++.+|+.|++  |.. ++.....  ..     .....+..    -+|++..   ....++.+|.++
T Consensus        68 ~~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~----~~v~v~~---~~g~l~ald~~t  139 (394)
T PRK11138         68 AYNKVYAADR-AGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAG----GKVYIGS---EKGQVYALNAED  139 (394)
T ss_pred             ECCEEEEECC-CCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEEC----CEEEEEc---CCCEEEEEECCC
Confidence            4667776653 4678889999988  543 2220000  00     00111111    1455422   234688888765


Q ss_pred             C--cccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCC--c-ccccc
Q 018005          179 Q--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPH--E-LTFFR  251 (362)
Q Consensus       179 ~--~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~--~-~~~~~  251 (362)
                      +  .|+...    +.     .....++..+|.+|+..... .+.++|++++  .|+.-. .       .|.  . .....
T Consensus       140 G~~~W~~~~----~~-----~~~ssP~v~~~~v~v~~~~g-~l~ald~~tG~~~W~~~~-~-------~~~~~~~~~~sP  201 (394)
T PRK11138        140 GEVAWQTKV----AG-----EALSRPVVSDGLVLVHTSNG-MLQALNESDGAVKWTVNL-D-------VPSLTLRGESAP  201 (394)
T ss_pred             CCCcccccC----CC-----ceecCCEEECCEEEEECCCC-EEEEEEccCCCEeeeecC-C-------CCcccccCCCCC
Confidence            4  697643    11     12345677899999765544 7999999865  676521 1       111  0 11222


Q ss_pred             eeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCC
Q 018005          252 LVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWP  330 (362)
Q Consensus       252 lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  330 (362)
                      ++    .+|.+++...      ...+.....+.... |+.-...|.... ...+.  .. .....+..++.+|+.. ..+
T Consensus       202 ~v----~~~~v~~~~~------~g~v~a~d~~~G~~~W~~~~~~~~~~~-~~~~~--~~-~~~sP~v~~~~vy~~~-~~g  266 (394)
T PRK11138        202 AT----AFGGAIVGGD------NGRVSAVLMEQGQLIWQQRISQPTGAT-EIDRL--VD-VDTTPVVVGGVVYALA-YNG  266 (394)
T ss_pred             EE----ECCEEEEEcC------CCEEEEEEccCChhhheeccccCCCcc-chhcc--cc-cCCCcEEECCEEEEEE-cCC
Confidence            33    4566655432      13334444432222 874322111000 00000  00 0011123467788765 356


Q ss_pred             eEEEEECCCCc--eEE
Q 018005          331 EILYYNVARRT--WHW  344 (362)
Q Consensus       331 ~v~~yd~~~~~--w~~  344 (362)
                      .+.++|+++++  |+.
T Consensus       267 ~l~ald~~tG~~~W~~  282 (394)
T PRK11138        267 NLVALDLRSGQIVWKR  282 (394)
T ss_pred             eEEEEECCCCCEEEee
Confidence            89999999874  665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=87.95  E-value=0.27  Score=44.95  Aligned_cols=37  Identities=32%  Similarity=0.514  Sum_probs=34.2

Q ss_pred             cCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCc
Q 018005           14 SRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSP   50 (362)
Q Consensus        14 ~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~   50 (362)
                      -.||.|++.+||+.|..+++++++.+|+.|+....+.
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            4699999999999999999999999999999988764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.89  E-value=11  Score=35.10  Aligned_cols=174  Identities=13%  Similarity=0.124  Sum_probs=89.0

Q ss_pred             eCCcCceeeccCCCCCC---ccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc-cccCCCCccccccCCCccc
Q 018005          127 NLVTLSSRTIDFPTYPF---DFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK-FDIDGFPSMILSQSSHQEG  202 (362)
Q Consensus       127 NP~t~~w~~lP~~~~~~---~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~-~~~~~~p~~~~~~~~~~~~  202 (362)
                      +|.+.-|.+...++...   ....+.+.+ ...|.+++.++    ..+.+|++.+..=+. ..       .+..-...-.
T Consensus         8 t~e~~~w~~~~~~~~~ke~~~vssl~fsp-~~P~d~aVt~S----~rvqly~~~~~~~~k~~s-------rFk~~v~s~~   75 (487)
T KOG0310|consen    8 TPEIRYWRQETFPPVHKEHNSVSSLCFSP-KHPYDFAVTSS----VRVQLYSSVTRSVRKTFS-------RFKDVVYSVD   75 (487)
T ss_pred             CccchhhhhhcccccccccCcceeEecCC-CCCCceEEecc----cEEEEEecchhhhhhhHH-------hhccceeEEE
Confidence            45566676665443222   223344443 23455555443    578999987743222 11       1110011112


Q ss_pred             EEECCEEEEEecCCcEEEEEEcCCCee-ecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEE
Q 018005          203 VFYKGSLYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWE  281 (362)
Q Consensus       203 v~~~G~ly~~~~~~~~i~~~D~~~~~w-~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~  281 (362)
                      .-.+|++...+.....+-+||+.+..- ..+....      .|-.  ....-.   .++.+++.+.     ....+.+|+
T Consensus        76 fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~------apv~--~~~f~~---~d~t~l~s~s-----Dd~v~k~~d  139 (487)
T KOG0310|consen   76 FRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQ------APVH--VTKFSP---QDNTMLVSGS-----DDKVVKYWD  139 (487)
T ss_pred             eecCCeEEEccCCcCcEEEeccccHHHHHHHhhcc------Ccee--EEEecc---cCCeEEEecC-----CCceEEEEE
Confidence            233799999988776899999665211 1111110      1221  112221   5677777665     237788997


Q ss_pred             ECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 018005          282 LGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR  340 (362)
Q Consensus       282 l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~  340 (362)
                      ++...  + ...+..  ..++.+       ...+.-..+.|++.+++.+.|-.||.++.
T Consensus       140 ~s~a~--v-~~~l~~--htDYVR-------~g~~~~~~~hivvtGsYDg~vrl~DtR~~  186 (487)
T KOG0310|consen  140 LSTAY--V-QAELSG--HTDYVR-------CGDISPANDHIVVTGSYDGKVRLWDTRSL  186 (487)
T ss_pred             cCCcE--E-EEEecC--CcceeE-------eeccccCCCeEEEecCCCceEEEEEeccC
Confidence            75333  3 222210  001111       00111235678888888899999999987

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=87.07  E-value=20  Score=31.28  Aligned_cols=139  Identities=18%  Similarity=0.079  Sum_probs=73.2

Q ss_pred             ceeeeeeCCCCCeE-eecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCcee-eccCCCCCCccceEEEEeC
Q 018005           76 DQYPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSR-TIDFPTYPFDFELLTLVST  153 (362)
Q Consensus        76 ~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~-~lP~~~~~~~~~~~~~~~~  153 (362)
                      +.+..+|+.+++-. ..++|.    .....-++..++-|+.....++..++||+.|-+-. .++-   +-  .+-|+...
T Consensus        68 S~l~~~d~~tg~~~~~~~l~~----~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y---~~--EGWGLt~d  138 (264)
T PF05096_consen   68 SSLRKVDLETGKVLQSVPLPP----RYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPY---PG--EGWGLTSD  138 (264)
T ss_dssp             EEEEEEETTTSSEEEEEE-TT----T--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE----SS--S--EEEEC
T ss_pred             EEEEEEECCCCcEEEEEECCc----cccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEec---CC--cceEEEcC
Confidence            35667888887654 344442    22233344556666666666788999999875532 2222   21  23333332


Q ss_pred             CCceEEEEEeeecCCCeEEEEeCCCCcc-cccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeec
Q 018005          154 PSGYKIFMLFAKSFPNYAFVYDSTDQSW-SKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWET  231 (362)
Q Consensus       154 ~~~ykv~~~~~~~~~~~~~vy~s~~~~W-~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~  231 (362)
                      +.  .++.-.   ++..++..|+++-+= +...   +.....+...-..--+++|.+|.-......|+..||++++-..
T Consensus       139 g~--~Li~SD---GS~~L~~~dP~~f~~~~~i~---V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~  209 (264)
T PF05096_consen  139 GK--RLIMSD---GSSRLYFLDPETFKEVRTIQ---VTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVG  209 (264)
T ss_dssp             SS--CEEEE----SSSEEEEE-TTT-SEEEEEE----EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEE
T ss_pred             CC--EEEEEC---CccceEEECCcccceEEEEE---EEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEE
Confidence            22  344322   345788888875321 1111   1111111112344567899999888777889999999986543

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.62  E-value=28  Score=32.64  Aligned_cols=121  Identities=13%  Similarity=0.126  Sum_probs=68.9

Q ss_pred             ECCEEEEEecCCcEEEEEEcCCC-eeecCCCC-CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEE
Q 018005          205 YKGSLYFTTPEPFSIVRFDLENG-IWETPNDA-NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWEL  282 (362)
Q Consensus       205 ~~G~ly~~~~~~~~i~~~D~~~~-~w~~~~~p-~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l  282 (362)
                      .++-+.+.|+....|-.||+... .|.. ... +      .|-  +  .++..  -.|.+.+..+      ...+.||++
T Consensus       164 ~~~hivvtGsYDg~vrl~DtR~~~~~v~-elnhg------~pV--e--~vl~l--psgs~iasAg------Gn~vkVWDl  224 (487)
T KOG0310|consen  164 ANDHIVVTGSYDGKVRLWDTRSLTSRVV-ELNHG------CPV--E--SVLAL--PSGSLIASAG------GNSVKVWDL  224 (487)
T ss_pred             CCCeEEEecCCCceEEEEEeccCCceeE-EecCC------Cce--e--eEEEc--CCCCEEEEcC------CCeEEEEEe
Confidence            35666666766668999999876 4433 111 0      221  1  12211  3556666554      278999999


Q ss_pred             CCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCceEEcCCCCCCCCCCCccee
Q 018005          283 GCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSCGFS  360 (362)
Q Consensus       283 ~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~  360 (362)
                      ..++.  ++..+.            .+...+.|.  +.++.=.+.+...+.+=+||  +..|+.+.++-++...+||+.+
T Consensus       225 ~~G~q--ll~~~~------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd--~t~~Kvv~s~~~~~pvLsiavs  288 (487)
T KOG0310|consen  225 TTGGQ--LLTSMF------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFD--TTNYKVVHSWKYPGPVLSIAVS  288 (487)
T ss_pred             cCCce--ehhhhh------------cccceEEEEEeecCCceEeecccccceEEEE--ccceEEEEeeecccceeeEEec
Confidence            64442  111110            122233333  22233233444667889999  7788888888888888888753

>PF13013 F-box-like_2: F-box-like domain

Probab=85.24  E-value=0.78  Score=33.99  Aligned_cols=39  Identities=28%  Similarity=0.505  Sum_probs=29.4

Q ss_pred             CCCCCCChhhhcCCCHHHHHHHHccCChhhhhhhhccch
Q 018005            3 PKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCK   41 (362)
Q Consensus         3 ~~~~~~~~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK   41 (362)
                      ||++...+-...+||+||++.|+..-.-..+......|+
T Consensus        12 ~kp~~~~~ltl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   12 PKPPNRQSLTLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             CCCCCccccchhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            444445555678899999999999998877766666665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=84.92  E-value=32  Score=31.70  Aligned_cols=210  Identities=15%  Similarity=0.197  Sum_probs=107.2

Q ss_pred             eeeeeeCCCCC--eEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCc--eeeccCCCCCCccceEEEEe
Q 018005           77 QYPLYDSTHGT--WRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYPFDFELLTLVS  152 (362)
Q Consensus        77 ~~~~~d~~~~~--w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~  152 (362)
                      .+.++|..+++  |. ..++..    .... .+..++.+++... ++.++.+|+.|++  |..-  ...... ....+. 
T Consensus        76 ~v~a~d~~tG~~~W~-~~~~~~----~~~~-p~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~~--~~~~~~-~~p~v~-  144 (377)
T TIGR03300        76 TVVALDAETGKRLWR-VDLDER----LSGG-VGADGGLVFVGTE-KGEVIALDAEDGKELWRAK--LSSEVL-SPPLVA-  144 (377)
T ss_pred             eEEEEEccCCcEeee-ecCCCC----cccc-eEEcCCEEEEEcC-CCEEEEEECCCCcEeeeec--cCceee-cCCEEE-
Confidence            56778876653  53 222211    1111 2334677766543 5788999999988  4432  111100 000011 


Q ss_pred             CCCceEEEEEeeecCCCeEEEEeCCCC--cccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--e
Q 018005          153 TPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--I  228 (362)
Q Consensus       153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~  228 (362)
                         .-++++..   ....++.+|..++  .|+...  ..+.  ........++..+|.+|+-... ..+.++|++++  .
T Consensus       145 ---~~~v~v~~---~~g~l~a~d~~tG~~~W~~~~--~~~~--~~~~~~~sp~~~~~~v~~~~~~-g~v~ald~~tG~~~  213 (377)
T TIGR03300       145 ---NGLVVVRT---NDGRLTALDAATGERLWTYSR--VTPA--LTLRGSASPVIADGGVLVGFAG-GKLVALDLQTGQPL  213 (377)
T ss_pred             ---CCEEEEEC---CCCeEEEEEcCCCceeeEEcc--CCCc--eeecCCCCCEEECCEEEEECCC-CEEEEEEccCCCEe
Confidence               11344322   2346888888765  487654  2221  1111234567778877754433 37899998765  5


Q ss_pred             eecCCCCCcccccCCCCc---------ccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHH
Q 018005          229 WETPNDANDHMTMMLPHE---------LTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMM  298 (362)
Q Consensus       229 w~~~~~p~~~~~~~~p~~---------~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~  298 (362)
                      |+.- ..       .|.+         .....++    .+|.+|+...      ...+..++.+..+. |..-.  +   
T Consensus       214 W~~~-~~-------~~~g~~~~~~~~~~~~~p~~----~~~~vy~~~~------~g~l~a~d~~tG~~~W~~~~--~---  270 (377)
T TIGR03300       214 WEQR-VA-------LPKGRTELERLVDVDGDPVV----DGGQVYAVSY------QGRVAALDLRSGRVLWKRDA--S---  270 (377)
T ss_pred             eeec-cc-------cCCCCCchhhhhccCCccEE----ECCEEEEEEc------CCEEEEEECCCCcEEEeecc--C---
Confidence            7541 11       1111         0111222    5777777654      24566666643333 87431  0   


Q ss_pred             HHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC--ceEE
Q 018005          299 CRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR--TWHW  344 (362)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~--~w~~  344 (362)
                                ....  .+..++.||+.. ..+.++++|.+++  .|+.
T Consensus       271 ----------~~~~--p~~~~~~vyv~~-~~G~l~~~d~~tG~~~W~~  305 (377)
T TIGR03300       271 ----------SYQG--PAVDDNRLYVTD-ADGVVVALDRRSGSELWKN  305 (377)
T ss_pred             ----------CccC--ceEeCCEEEEEC-CCCeEEEEECCCCcEEEcc
Confidence                      0011  123467788764 4567999999887  4554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=84.64  E-value=27  Score=30.61  Aligned_cols=213  Identities=14%  Similarity=0.114  Sum_probs=114.8

Q ss_pred             eeCCCCCeEeecCCcCCCCCCceEEEecCCc-eEEEecCCCCeEEEEeCCcCceeeccCCCCC--CccceEEEEeCCCce
Q 018005           81 YDSTHGTWRRLSLPYSLLLPSAATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP--FDFELLTLVSTPSGY  157 (362)
Q Consensus        81 ~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~--~~~~~~~~~~~~~~y  157 (362)
                      .||.++.-...+++... . ....+++-.++ ++|-.+   ..+.-++|.|.+..+.|-+...  -+.....|+..+   
T Consensus        88 LdP~tGev~~ypLg~Ga-~-Phgiv~gpdg~~Witd~~---~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G---  159 (353)
T COG4257          88 LDPATGEVETYPLGSGA-S-PHGIVVGPDGSAWITDTG---LAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWG---  159 (353)
T ss_pred             cCCCCCceEEEecCCCC-C-CceEEECCCCCeeEecCc---ceeEEecCcccceEEeecccccCCCcccceeeCCCc---
Confidence            47777777666665321 1 12223444444 344322   3677789999998888755321  122233444332   


Q ss_pred             EEEEEeeec-------CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCe
Q 018005          158 KIFMLFAKS-------FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI  228 (362)
Q Consensus       158 kv~~~~~~~-------~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~  228 (362)
                      .+.-.+...       ....+++|..             |.+     ....++++  ||.+|+..-..+.|...|+.+..
T Consensus       160 ~lWFt~q~G~yGrLdPa~~~i~vfpa-------------PqG-----~gpyGi~atpdGsvwyaslagnaiaridp~~~~  221 (353)
T COG4257         160 NLWFTGQIGAYGRLDPARNVISVFPA-------------PQG-----GGPYGICATPDGSVWYASLAGNAIARIDPFAGH  221 (353)
T ss_pred             cEEEeeccccceecCcccCceeeecc-------------CCC-----CCCcceEECCCCcEEEEeccccceEEcccccCC
Confidence            121111100       1224444422             210     12234444  89999886555678889998876


Q ss_pred             eecCCCCCcccccCCCCcc--cccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhc
Q 018005          229 WETPNDANDHMTMMLPHEL--TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSV  305 (362)
Q Consensus       229 w~~~~~p~~~~~~~~p~~~--~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~  305 (362)
                      =+.+..|         ...  ....+.+.  ..|++.+...     ...  .+..+|.... |.+.. +|.     .   
T Consensus       222 aev~p~P---------~~~~~gsRriwsd--pig~~wittw-----g~g--~l~rfdPs~~sW~eyp-LPg-----s---  274 (353)
T COG4257         222 AEVVPQP---------NALKAGSRRIWSD--PIGRAWITTW-----GTG--SLHRFDPSVTSWIEYP-LPG-----S---  274 (353)
T ss_pred             cceecCC---------CcccccccccccC--ccCcEEEecc-----CCc--eeeEeCcccccceeee-CCC-----C---
Confidence            6665433         331  12333323  5677777744     223  3445566654 88652 221     0   


Q ss_pred             cccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEEcCCC
Q 018005          306 CYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSC  348 (362)
Q Consensus       306 ~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~  348 (362)
                        ........+...+.+.+.....+.|..||+++-+++.++..
T Consensus       275 --~arpys~rVD~~grVW~sea~agai~rfdpeta~ftv~p~p  315 (353)
T COG4257         275 --KARPYSMRVDRHGRVWLSEADAGAIGRFDPETARFTVLPIP  315 (353)
T ss_pred             --CCCcceeeeccCCcEEeeccccCceeecCcccceEEEecCC
Confidence              11112223445578888777788899999999999998653

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=84.26  E-value=27  Score=32.24  Aligned_cols=107  Identities=14%  Similarity=0.291  Sum_probs=57.8

Q ss_pred             cccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005          200 QEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM  277 (362)
Q Consensus       200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i  277 (362)
                      ..+++.+|.+|..+... .+.+||..++  .|+. .         ++..... ..+.   .++.+++...      ...+
T Consensus        59 ~~p~v~~~~v~v~~~~g-~v~a~d~~tG~~~W~~-~---------~~~~~~~-~p~v---~~~~v~v~~~------~g~l  117 (377)
T TIGR03300        59 LQPAVAGGKVYAADADG-TVVALDAETGKRLWRV-D---------LDERLSG-GVGA---DGGLVFVGTE------KGEV  117 (377)
T ss_pred             cceEEECCEEEEECCCC-eEEEEEccCCcEeeee-c---------CCCCccc-ceEE---cCCEEEEEcC------CCEE
Confidence            45677889999776554 7999998754  6765 2         2222111 2332   4666665432      1334


Q ss_pred             EEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCc--eEE
Q 018005          278 KLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT--WHW  344 (362)
Q Consensus       278 ~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~--w~~  344 (362)
                      ..+..+ +++  |+.-  ++.+.            . ...+..++.+++.. ..+.+.++|+++++  |+.
T Consensus       118 ~ald~~-tG~~~W~~~--~~~~~------------~-~~p~v~~~~v~v~~-~~g~l~a~d~~tG~~~W~~  171 (377)
T TIGR03300       118 IALDAE-DGKELWRAK--LSSEV------------L-SPPLVANGLVVVRT-NDGRLTALDAATGERLWTY  171 (377)
T ss_pred             EEEECC-CCcEeeeec--cCcee------------e-cCCEEECCEEEEEC-CCCeEEEEEcCCCceeeEE
Confidence            444332 333  8743  21100            0 01112456677654 35679999999874  554

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=83.94  E-value=32  Score=31.00  Aligned_cols=159  Identities=14%  Similarity=0.155  Sum_probs=86.9

Q ss_pred             CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE-CCE-EEEEecCCcEEEEE--EcCCCeeecCCCCCcccccCC
Q 018005          168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGS-LYFTTPEPFSIVRF--DLENGIWETPNDANDHMTMML  243 (362)
Q Consensus       168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~-ly~~~~~~~~i~~~--D~~~~~w~~~~~p~~~~~~~~  243 (362)
                      ...+.+|+..++.=.....-.+++    .......+++ ||+ .|.+.+-..+|.+|  |....+++.++.-     ..+
T Consensus       166 ~Dri~~y~~~dg~L~~~~~~~v~~----G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i-----~tl  236 (346)
T COG2706         166 TDRIFLYDLDDGKLTPADPAEVKP----GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI-----DTL  236 (346)
T ss_pred             CceEEEEEcccCccccccccccCC----CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee-----ccC
Confidence            348889999887765554111221    1112234555 565 47776655566555  5555788776422     115


Q ss_pred             CCccc------ccceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEE
Q 018005          244 PHELT------FFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYC  315 (362)
Q Consensus       244 p~~~~------~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~  315 (362)
                      |.+..      ...+.    .+|+ ||+...     ..+.|.+|..++.+. -+.+...+.+--   .+      ..+..
T Consensus       237 P~dF~g~~~~aaIhis----~dGrFLYasNR-----g~dsI~~f~V~~~~g~L~~~~~~~teg~---~P------R~F~i  298 (346)
T COG2706         237 PEDFTGTNWAAAIHIS----PDGRFLYASNR-----GHDSIAVFSVDPDGGKLELVGITPTEGQ---FP------RDFNI  298 (346)
T ss_pred             ccccCCCCceeEEEEC----CCCCEEEEecC-----CCCeEEEEEEcCCCCEEEEEEEeccCCc---CC------cccee
Confidence            65432      23343    6777 455443     346899999988754 444443332110   00      12333


Q ss_pred             EeeCCEEEEEeecCCeE--EEEECCCCceEEcCCCCCCCC
Q 018005          316 FWHQGMICVCCYTWPEI--LYYNVARRTWHWLPSCPSLPH  353 (362)
Q Consensus       316 ~~~~~~i~~~~~~~~~v--~~yd~~~~~w~~~~~~~~~~~  353 (362)
                      .-.++.+++....++.+  +.=|.+|++..++......++
T Consensus       299 ~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~  338 (346)
T COG2706         299 NPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPE  338 (346)
T ss_pred             CCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCC
Confidence            34567777776666655  444667788888766554443

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=83.26  E-value=27  Score=29.49  Aligned_cols=187  Identities=13%  Similarity=0.111  Sum_probs=90.8

Q ss_pred             CeEEEEeCCcCc--eeeccCCCCCCccce-EEEEeCCCceEEEEEeeecCCCeEEEEeCCCC--cccccccCCCCccccc
Q 018005          121 SSFLVCNLVTLS--SRTIDFPTYPFDFEL-LTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSKFDIDGFPSMILS  195 (362)
Q Consensus       121 ~~~~v~NP~t~~--w~~lP~~~~~~~~~~-~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~~~~~~~p~~~~~  195 (362)
                      +.+..+|+.|++  |..  .......... ......  . .+++..   ....+..+|..++  .|+...    +.    
T Consensus         3 g~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~--~-~v~~~~---~~~~l~~~d~~tG~~~W~~~~----~~----   66 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSY--DLGPGIGGPVATAVPDG--G-RVYVAS---GDGNLYALDAKTGKVLWRFDL----PG----   66 (238)
T ss_dssp             SEEEEEETTTTEEEEEE--ECSSSCSSEEETEEEET--T-EEEEEE---TTSEEEEEETTTSEEEEEEEC----SS----
T ss_pred             CEEEEEECCCCCEEEEE--ECCCCCCCccceEEEeC--C-EEEEEc---CCCEEEEEECCCCCEEEEeec----cc----
Confidence            567889999988  443  2211111111 122111  1 344432   4568899998665  476653    11    


Q ss_pred             cCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCc
Q 018005          196 QSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI  273 (362)
Q Consensus       196 ~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~  273 (362)
                       .....++..+|.+|+..... .+.++|..+.  .|+....... .   .+ .........   .++.+++...      
T Consensus        67 -~~~~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~~~~~~~~-~---~~-~~~~~~~~~---~~~~~~~~~~------  130 (238)
T PF13360_consen   67 -PISGAPVVDGGRVYVGTSDG-SLYALDAKTGKVLWSIYLTSSP-P---AG-VRSSSSPAV---DGDRLYVGTS------  130 (238)
T ss_dssp             -CGGSGEEEETTEEEEEETTS-EEEEEETTTSCEEEEEEE-SSC-T---CS-TB--SEEEE---ETTEEEEEET------
T ss_pred             -cccceeeeccccccccccee-eeEecccCCcceeeeecccccc-c---cc-cccccCceE---ecCEEEEEec------
Confidence             11233578889999887555 8999997654  7773111100 0   11 111122221   3344444432      


Q ss_pred             cceEEEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCc--eEEc
Q 018005          274 STTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT--WHWL  345 (362)
Q Consensus       274 ~~~i~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~--w~~~  345 (362)
                      ...+..+.++ +++  |..-...+..... .-.   ........+..++.||+.... +.++..|.++++  |+..
T Consensus       131 ~g~l~~~d~~-tG~~~w~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~v~~~~~~-g~~~~~d~~tg~~~w~~~  200 (238)
T PF13360_consen  131 SGKLVALDPK-TGKLLWKYPVGEPRGSSP-ISS---FSDINGSPVISDGRVYVSSGD-GRVVAVDLATGEKLWSKP  200 (238)
T ss_dssp             CSEEEEEETT-TTEEEEEEESSTT-SS---EEE---ETTEEEEEECCTTEEEEECCT-SSEEEEETTTTEEEEEEC
T ss_pred             cCcEEEEecC-CCcEEEEeecCCCCCCcc-eee---ecccccceEEECCEEEEEcCC-CeEEEEECCCCCEEEEec
Confidence            2444444442 333  7765444321100 000   000112233345678887643 346667999997  7544

...

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=82.20  E-value=34  Score=30.24  Aligned_cols=65  Identities=18%  Similarity=0.444  Sum_probs=41.5

Q ss_pred             cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCC-ccceEEEEEECCCCCEEEEec
Q 018005          217 FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELGCGGNWIEVER  293 (362)
Q Consensus       217 ~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~-~~~~i~vw~l~~~~~W~~v~~  293 (362)
                      ..+..||+.+.+|..+...       +-........+    .+.+|++.|...... ....+-.|.++ ..+|..+..
T Consensus        16 ~~lC~yd~~~~qW~~~g~~-------i~G~V~~l~~~----~~~~Llv~G~ft~~~~~~~~la~yd~~-~~~w~~~~~   81 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSSPGNG-------ISGTVTDLQWA----SNNQLLVGGNFTLNGTNSSNLATYDFK-NQTWSSLGG   81 (281)
T ss_pred             CEEEEEECCCCEeecCCCC-------ceEEEEEEEEe----cCCEEEEEEeeEECCCCceeEEEEecC-CCeeeecCC
Confidence            3688899999999975322       22212222222    478898888766544 46678888773 445987654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=82.04  E-value=32  Score=29.49  Aligned_cols=68  Identities=16%  Similarity=0.171  Sum_probs=43.1

Q ss_pred             CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCC
Q 018005          206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG  285 (362)
Q Consensus       206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~  285 (362)
                      +|.+||+......|..+|+.+++-..+..+         .   ...++. ..-+|+|++...       ..+.++++ ..
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~---------~---~~G~~~-~~~~g~l~v~~~-------~~~~~~d~-~~   69 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLP---------G---PNGMAF-DRPDGRLYVADS-------GGIAVVDP-DT   69 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESS---------S---EEEEEE-ECTTSEEEEEET-------TCEEEEET-TT
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecC---------C---CceEEE-EccCCEEEEEEc-------CceEEEec-CC
Confidence            599999988777899999999887765533         2   112221 003688887764       33344433 23


Q ss_pred             CCEEEEecc
Q 018005          286 GNWIEVERV  294 (362)
Q Consensus       286 ~~W~~v~~~  294 (362)
                      ++++.+.+.
T Consensus        70 g~~~~~~~~   78 (246)
T PF08450_consen   70 GKVTVLADL   78 (246)
T ss_dssp             TEEEEEEEE
T ss_pred             CcEEEEeec
Confidence            457777665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=80.42  E-value=35  Score=34.92  Aligned_cols=32  Identities=19%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             CcccEEECCEEEEEecCCcEEEEEEcCC--Ceeec
Q 018005          199 HQEGVFYKGSLYFTTPEPFSIVRFDLEN--GIWET  231 (362)
Q Consensus       199 ~~~~v~~~G~ly~~~~~~~~i~~~D~~~--~~w~~  231 (362)
                      ...++.++|++|..+..+ .+.++|.++  +.|+.
T Consensus       187 e~TPlvvgg~lYv~t~~~-~V~ALDa~TGk~lW~~  220 (764)
T TIGR03074       187 QATPLKVGDTLYLCTPHN-KVIALDAATGKEKWKF  220 (764)
T ss_pred             ccCCEEECCEEEEECCCC-eEEEEECCCCcEEEEE
Confidence            456889999999877654 799999885  47875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=80.38  E-value=88  Score=33.57  Aligned_cols=165  Identities=13%  Similarity=0.129  Sum_probs=83.4

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCC-------------CccceEEEEeCCCceEEEEEeeecCCCeEEEEe
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-------------FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYD  175 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~-------------~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~  175 (362)
                      .+|.+++.....+.+.++|+.++....+..-...             ..-.++++++.+.  .+++...  ....+.+||
T Consensus       693 ~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~--~LYVADs--~n~~Irv~D  768 (1057)
T PLN02919        693 VNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLK--ELYIADS--ESSSIRALD  768 (1057)
T ss_pred             CCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCC--EEEEEEC--CCCeEEEEE
Confidence            3667777665567899999988876543211100             0011344443322  3454433  346888999


Q ss_pred             CCCCccccccc-CC-CCc--ccc---------ccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCc--c
Q 018005          176 STDQSWSKFDI-DG-FPS--MIL---------SQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDAND--H  238 (362)
Q Consensus       176 s~~~~W~~~~~-~~-~p~--~~~---------~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~--~  238 (362)
                      ..++.-+.... +. .+.  ..+         .......++.+  +|.+|+.......|.+||+.+.....+.....  .
T Consensus       769 ~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~  848 (1057)
T PLN02919        769 LKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGF  848 (1057)
T ss_pred             CCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCC
Confidence            87655322110 00 000  000         00112334444  68899888777789999998876654321100  0


Q ss_pred             cccC-CCCccc-ccceeecccCCCeEEEEEEeecCCccceEEEEEECC
Q 018005          239 MTMM-LPHELT-FFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGC  284 (362)
Q Consensus       239 ~~~~-~p~~~~-~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~  284 (362)
                      .++. ...... -..+...  -+|+|||...     ....|.+|.++.
T Consensus       849 ~dG~~~~a~l~~P~GIavd--~dG~lyVaDt-----~Nn~Irvid~~~  889 (1057)
T PLN02919        849 KDGKALKAQLSEPAGLALG--ENGRLFVADT-----NNSLIRYLDLNK  889 (1057)
T ss_pred             CCCcccccccCCceEEEEe--CCCCEEEEEC-----CCCEEEEEECCC
Confidence            0000 000111 1223322  5789988865     346788887754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=80.35  E-value=53  Score=31.04  Aligned_cols=166  Identities=11%  Similarity=0.103  Sum_probs=87.8

Q ss_pred             CccccccccccCCCcceEEEEecCCCCceeeeeeCCCCCeEeecCCcCCC--CCCc--------eEEEecCCc-eEEEec
Q 018005           49 SPSFLSKTKCSSSAFSCFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLL--LPSA--------ATLLSSSKG-LLCFSL  117 (362)
Q Consensus        49 ~~~F~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~--~~~~--------~~~~~s~~G-ll~~~~  117 (362)
                      +..|..-+.++.++-..-+++...   ...++|||...+-.++.+.-++.  ....        ..-.+..+| ++.+..
T Consensus       263 HTnFtdYY~R~~nsDGkrIvFq~~---GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS  339 (668)
T COG4946         263 HTNFTDYYPRNANSDGKRIVFQNA---GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS  339 (668)
T ss_pred             cCCchhccccccCCCCcEEEEecC---CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe
Confidence            445666566554443334444432   35778999998877765331111  0000        011233445 332222


Q ss_pred             CCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccC
Q 018005          118 PSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       118 ~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~  197 (362)
                        .+..++.||--+--.+++...--+ ...+..+  +.  .++ + +......+.+|+-+++.=+.... +     + .+
T Consensus       340 --RGkaFi~~~~~~~~iqv~~~~~Vr-Y~r~~~~--~e--~~v-i-gt~dgD~l~iyd~~~~e~kr~e~-~-----l-g~  403 (668)
T COG4946         340 --RGKAFIMRPWDGYSIQVGKKGGVR-YRRIQVD--PE--GDV-I-GTNDGDKLGIYDKDGGEVKRIEK-D-----L-GN  403 (668)
T ss_pred             --cCcEEEECCCCCeeEEcCCCCceE-EEEEccC--Cc--ceE-E-eccCCceEEEEecCCceEEEeeC-C-----c-cc
Confidence              356888888888777776542111 1111111  11  222 1 22234488999999887554431 1     1 11


Q ss_pred             CCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCC
Q 018005          198 SHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPN  233 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~  233 (362)
                      ...-.+.-+|+.-+++.+...++++|++++.-+.++
T Consensus       404 I~av~vs~dGK~~vvaNdr~el~vididngnv~~id  439 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLID  439 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEec
Confidence            222234447887777777778889999888777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	6e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-06
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	2e-05
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-04

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 47.6 bits (114), Expect = 6e-08
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 5  RREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
          R       W  LP++LL  + S L    LLK+   CK +  L    S 
Sbjct: 1  RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 48

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 22/67 (32%)

Query: 5  RREMDPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFS 64
          R       W  LP++LL  + S L    LLK+   CK +  L    S       +     
Sbjct: 1  RENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH 60

Query: 65 CFILLSH 71
            +    
Sbjct: 61 PDVTGRL 67

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 48.4 bits (114), Expect = 2e-06
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 3   PKRREMDPAIWSRLPEDLLDHVLSFLPPKMLLKL-RSTCKHFNSLLFSPSFLSKTKCSSS 61
            +         + LPE LL  VL+ LP   L++  R  C  +  L+              
Sbjct: 41  EEEEAEAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG 100

Query: 62  AFSCFILLSHPQCYDQYPLYDSTHGTWRR 90
                        + Q+           R
Sbjct: 101 LVPEGSADEERDHWQQFYFLSKRRRNLLR 129

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 22/202 (10%), Positives = 51/202 (25%), Gaps = 46/202 (22%)

Query: 170 YAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYF---------TTPEPFSIV 220
           Y     + D+ W+        +            F  G+LY             + F+ V
Sbjct: 34  YKLDTQAKDKKWTAL-----AAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDV 88

Query: 221 -RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKL 279
            +++ +   W              P  +             K Y+ GGV +N  +   + 
Sbjct: 89  HKYNPKTNSWVKLMS-------HAPMGMAGHVTFVHN---GKAYVTGGVNQNIFNGYFED 138

Query: 280 WELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVAR 339
                G +   ++++      K     Y     +                     ++ + 
Sbjct: 139 LNEA-GKDSTAIDKINAHYFDKKAED-YFFNKFLLS-------------------FDPST 177

Query: 340 RTWHWLPSCPSLPHKWSCGFSW 361
           + W +    P      +   + 
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNK 199

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 11 AIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS 51
          +  +RLP D+  ++LSFL P  L +L ST  ++N  +  P 
Sbjct: 3  STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPI 43

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.93
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.92
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.91
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.91
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.91
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.84
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.84
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.83
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.83
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.83
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.82
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.8
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.78
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.71
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.68
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.6
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.52
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.13
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.99
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.76
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.94
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.7
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.42
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.55
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.34
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.3
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	96.22
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.19
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.05
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	96.02
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	96.0
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.87
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	95.43
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	95.38
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	95.19
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.17
3jro_A	753	Fusion protein of protein transport protein SEC13	95.05
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.0
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.9
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	94.81
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	94.81
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.81
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	94.78
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.61
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	94.27
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.25
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.17
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	94.12
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.76
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	93.2
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	93.18
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	92.75
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.64
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	92.64
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	92.63
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.34
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	92.24
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	92.15
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	92.08
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	92.04
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	92.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	91.86
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.82
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	91.72
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	91.67
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	91.5
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	91.28
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	91.09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	90.99
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	90.58
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	90.56
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	90.55
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	90.15
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	90.11
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	89.81
2p4o_A	306	Hypothetical protein; putative lactonase, structur	89.1
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	88.94
2pm7_B	297	Protein transport protein SEC13, protein transport	88.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	88.88
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	88.24
3ow8_A	321	WD repeat-containing protein 61; structural genomi	87.9
3v9f_A	781	Two-component system sensor histidine kinase/RESP	87.62
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	87.26
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	87.21
2p4o_A	306	Hypothetical protein; putative lactonase, structur	87.04
3jrp_A	379	Fusion protein of protein transport protein SEC13	86.99
3v9f_A	781	Two-component system sensor histidine kinase/RESP	86.96
3jro_A	753	Fusion protein of protein transport protein SEC13	86.9
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	86.87
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	86.82
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	85.86
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	85.41
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	85.41
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	85.11
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	84.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	84.52
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	83.94
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	83.91
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	83.68
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	83.5
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	83.36
2kwv_A	48	RAD30 homolog B, DNA polymerase IOTA; ubiquitin-bi	83.29
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	83.26
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	82.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	81.4
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	80.93

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.93  E-value=8.2e-24  Score=189.14  Aligned_cols=256  Identities=16%  Similarity=0.118  Sum_probs=188.3

Q ss_pred             eEEEEecCCCCceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC----CCeEEEEeCCcCceeeccCCC
Q 018005           65 CFILLSHPQCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS----SSSFLVCNLVTLSSRTIDFPT  140 (362)
Q Consensus        65 ~~l~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~----~~~~~v~NP~t~~w~~lP~~~  140 (362)
                      .++++.+......+..||+..++|..++   .+|.++....++..+|.|++.++.    .+.+.+|||.|++|..+++++
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIR---CPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECC---CCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCC---CCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3555554433567889999999999986   233445555556678877777653    358999999999999999988


Q ss_pred             CCCccceEEEEeCCCceEEEEEeeec----CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC-
Q 018005          141 YPFDFELLTLVSTPSGYKIFMLFAKS----FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-  215 (362)
Q Consensus       141 ~~~~~~~~~~~~~~~~ykv~~~~~~~----~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-  215 (362)
                      .++.....+....    +++++||..    ....+++||+.+++|+..+  .+|.    .+..+..+.++|++|++++. 
T Consensus        90 ~~r~~~~~~~~~~----~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAAEG----KIYTSGGSEVGNSALYLFECYDTRTESWHTKP--SMLT----QRCSHGMVEANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEETT----EEEEECCBBTTBSCCCCEEEEETTTTEEEEEC--CCSS----CCBSCEEEEETTEEEEECCEE
T ss_pred             ccccceeEEEECC----EEEEECCCCCCCcEeeeEEEEeCCCCceEeCC--CCcC----CcceeEEEEECCEEEEECCCC
Confidence            7776655554432    788888864    2348999999999999998  6765    34567788899999999862 


Q ss_pred             --------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-
Q 018005          216 --------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-  286 (362)
Q Consensus       216 --------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-  286 (362)
                              ...+.+||+.+++|+.+. +       +|..+..+.++.   .+|+||++||.........+++|  |... 
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~i~v~GG~~~~~~~~~~~~y--d~~~~  226 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELC-P-------MIEARKNHGLVF---VKDKIFAVGGQNGLGGLDNVEYY--DIKLN  226 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCEETTEEBCCEEEE--ETTTT
T ss_pred             CCCCcccccceEEEeCCCCCeEEECC-C-------ccchhhcceEEE---ECCEEEEEeCCCCCCCCceEEEe--eCCCC
Confidence                    346899999999999874 4       676666677764   89999999997643333455555  5444 


Q ss_pred             CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEEcCCCCCCCCCCCcc
Q 018005          287 NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHKWSCG  358 (362)
Q Consensus       287 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~  358 (362)
                      +|+++..+|.            ......++..++.||+.++.     ...+.+||+++++|+.++.+|.+....+|+
T Consensus       227 ~W~~~~~~p~------------~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  291 (306)
T 3ii7_A          227 EWKMVSPMPW------------KGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKVRAFPVTSCLI  291 (306)
T ss_dssp             EEEECCCCSC------------CBSCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTEEEEEEEEECCSCTTCEE
T ss_pred             cEEECCCCCC------------CccceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCeEEeCCCcccccceeEEE
Confidence            4999988762            11223455568888988753     356999999999999999988877666654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.92  E-value=6.8e-23  Score=183.39  Aligned_cols=256  Identities=16%  Similarity=0.128  Sum_probs=185.1

Q ss_pred             EEEEecC--CCCceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC----C-----CeEEEEeCCcCcee
Q 018005           66 FILLSHP--QCYDQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS----S-----SSFLVCNLVTLSSR  134 (362)
Q Consensus        66 ~l~~~~~--~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~----~-----~~~~v~NP~t~~w~  134 (362)
                      ++++.+.  .....+..||+..++|..++   .+|.++....++..+|.|++.++.    .     +.+.+|||.|++|.
T Consensus        27 i~v~GG~~~~~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~  103 (308)
T 1zgk_A           27 IYTAGGYFRQSLSYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWS  103 (308)
T ss_dssp             EEEECCBSSSBCCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEE
T ss_pred             EEEEeCcCCCCcceEEEEcCCCCeEeECC---CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEe
Confidence            4555431  23346789999999999985   333344444455667877777653    1     46899999999999


Q ss_pred             eccCCCCCCccceEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEE
Q 018005          135 TIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYF  211 (362)
Q Consensus       135 ~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~  211 (362)
                      .+++++.++.....+....    +|+++||...   ...+++||+.+++|+..+  .+|.    .+..+..+.++|++|+
T Consensus       104 ~~~~~p~~r~~~~~~~~~~----~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv  173 (308)
T 1zgk_A          104 PCAPMSVPRNRIGVGVIDG----HIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLT----RRIGVGVAVLNRLLYA  173 (308)
T ss_dssp             ECCCCSSCCBTCEEEEETT----EEEEECCEETTEECCCEEEEETTTTEEEECC--CCSS----CCBSCEEEEETTEEEE
T ss_pred             ECCCCCcCccccEEEEECC----EEEEEcCCCCCcccccEEEECCCCCeEeECC--CCCc----cccceEEEEECCEEEE
Confidence            9999888776665554432    7888887543   348999999999999998  6665    3456778888999999


Q ss_pred             EecC-----CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC
Q 018005          212 TTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG  286 (362)
Q Consensus       212 ~~~~-----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~  286 (362)
                      +++.     ...+.+||+.+++|+.+. +       +|..+..+.++.   .+|+||++|+.........+.+|++ ..+
T Consensus       174 ~GG~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~v~~yd~-~~~  241 (308)
T 1zgk_A          174 VGGFDGTNRLNSAECYYPERNEWRMIT-A-------MNTIRSGAGVCV---LHNCIYAAGGYDGQDQLNSVERYDV-ETE  241 (308)
T ss_dssp             ECCBCSSCBCCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE---ETTEEEEECCBCSSSBCCCEEEEET-TTT
T ss_pred             EeCCCCCCcCceEEEEeCCCCeEeeCC-C-------CCCccccceEEE---ECCEEEEEeCCCCCCccceEEEEeC-CCC
Confidence            9863     246899999999999864 4       666666666664   8999999999754333445555544 234


Q ss_pred             CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEEcCCCCCCCCCCCcc
Q 018005          287 NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHKWSCG  358 (362)
Q Consensus       287 ~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~  358 (362)
                      +|+++..+|..            .....++..++.||+.++.     ...+++||+++++|+.++.+|.+....+|+
T Consensus       242 ~W~~~~~~p~~------------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~  306 (308)
T 1zgk_A          242 TWTFVAPMKHR------------RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA  306 (308)
T ss_dssp             EEEECCCCSSC------------CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEE
T ss_pred             cEEECCCCCCC------------ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCEEeecCCCCCCcccceeE
Confidence            49999877621            1223444567888888753     346899999999999999999887776664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.92  E-value=2e-22  Score=179.74  Aligned_cols=244  Identities=11%  Similarity=0.088  Sum_probs=177.5

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC-----CCeEEEEeCCcCceeeccCCCCCCccceEEE
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLSSRTIDFPTYPFDFELLTL  150 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~  150 (362)
                      ..+..||+..++|..++   .+|.++....++..+|.|++.++.     .+.+.+|||.+++|..+++++.++...+.+.
T Consensus        30 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~  106 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVA---ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV  106 (302)
T ss_dssp             CCEEEEETTTTEEEEEC---CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE
T ss_pred             CcEEEEcCcCCcEeEcc---cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE
Confidence            45788999999999985   233344444455567877777652     2478999999999999999888776665554


Q ss_pred             EeCCCceEEEEEeeecCC---CeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC-------CcEEE
Q 018005          151 VSTPSGYKIFMLFAKSFP---NYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-------PFSIV  220 (362)
Q Consensus       151 ~~~~~~ykv~~~~~~~~~---~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-------~~~i~  220 (362)
                      ...    +++++||....   ..+++||+.+++|+..+  .+|.    .+..+..+.++|++|++++.       ...+.
T Consensus       107 ~~~----~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  176 (302)
T 2xn4_A          107 LNG----LLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA--PMNT----RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVE  176 (302)
T ss_dssp             ETT----EEEEEEEECSSCEEEEEEEEETTTTEEEEEC--CCSS----CCBSCEEEEETTEEEEECCEETTTTEECCCEE
T ss_pred             ECC----EEEEEcCCCCCccCceEEEEeCCCCeEeecC--CCCC----cccCceEEEECCEEEEEeCCCCCCCccccEEE
Confidence            432    78888886432   37999999999999998  6765    33567788899999999863       24689


Q ss_pred             EEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEecccHHHH
Q 018005          221 RFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMC  299 (362)
Q Consensus       221 ~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~  299 (362)
                      +||+.+++|+.+. +       +|..+..+.+++   .+|+||++|+.........+++|  |... +|+++..+|..  
T Consensus       177 ~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~~~~~~--  241 (302)
T 2xn4_A          177 CYNATTNEWTYIA-E-------MSTRRSGAGVGV---LNNLLYAVGGHDGPLVRKSVEVY--DPTTNAWRQVADMNMC--  241 (302)
T ss_dssp             EEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCBSSSSBCCCEEEE--ETTTTEEEEECCCSSC--
T ss_pred             EEeCCCCcEEECC-C-------CccccccccEEE---ECCEEEEECCCCCCcccceEEEE--eCCCCCEeeCCCCCCc--
Confidence            9999999999863 4       666666666664   89999999996543333455555  5444 49999887621  


Q ss_pred             HHhhhccccCCccEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEEcC-CCCCCCCCCCc
Q 018005          300 RKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHWLP-SCPSLPHKWSC  357 (362)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~~~-~~~~~~~~~~~  357 (362)
                                .....++..++.||+.++..     ..+++||+++++|+.++ .+|.+....++
T Consensus       242 ----------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~r~~~~~  295 (302)
T 2xn4_A          242 ----------RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGV  295 (302)
T ss_dssp             ----------CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECSSCCSSCCBSCEE
T ss_pred             ----------cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeEEECCcccCcccccceE
Confidence                      12233455678889887532     35999999999999997 77776655443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.91  E-value=3.7e-22  Score=179.17  Aligned_cols=238  Identities=13%  Similarity=0.148  Sum_probs=172.9

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC-----C------CeEEEEeCCcCceeeccCCCCCCc
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----S------SSFLVCNLVTLSSRTIDFPTYPFD  144 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~------~~~~v~NP~t~~w~~lP~~~~~~~  144 (362)
                      ..+..|||..++|...++|.  |.++....++..+|.|++.++.     .      ..+.+|||.|++|..+++++.++.
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~--p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSS--QVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCC--CSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             CceEEECCCCCeEecCCCCC--CCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            46789999999998755543  2345566667778866665541     1      248999999999999999887766


Q ss_pred             cceEEEEeCCCceEEEEEeeec------CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC---
Q 018005          145 FELLTLVSTPSGYKIFMLFAKS------FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE---  215 (362)
Q Consensus       145 ~~~~~~~~~~~~ykv~~~~~~~------~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~---  215 (362)
                      ...++....    +++++||..      ....+++||+.+++|+..+  .+|.    .+..+..+.++|++|++++.   
T Consensus        91 ~~~~~~~~~----~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           91 LFGLGEALN----SIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD--PLPY----VVYGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             SCEEEEETT----EEEEECCEESSTTCCBCCCEEEEETTTTEEEECC--CCSS----CCBSCEEEEETTEEEEECCBCTT
T ss_pred             ceeEEEECC----EEEEEeCCcCCCCCcccceEEEECCCCCcEeECC--CCCC----cccceeEEEECCEEEEEeCCCCC
Confidence            555544432    788888853      1348999999999999998  6765    34567788899999999875   


Q ss_pred             ---CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEE
Q 018005          216 ---PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEV  291 (362)
Q Consensus       216 ---~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v  291 (362)
                         ...+.+||+.+++|+.+. +       +|..+..+.+++   .+|+||++||........  .+|.+|... +|+++
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~--~~~~yd~~~~~W~~~  227 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELA-P-------MQTARSLFGATV---HDGRIIVAAGVTDTGLTS--SAEVYSITDNKWAPF  227 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE---ETTEEEEEEEECSSSEEE--EEEEEETTTTEEEEE
T ss_pred             CcccceEEEEeCCCCeEEECC-C-------CCCchhceEEEE---ECCEEEEEeccCCCCccc--eEEEEECCCCeEEEC
Confidence               146999999999999864 4       677666667664   899999999976433333  445555554 49999


Q ss_pred             ecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC--------------CeEEEEECCCCceEEcCCCCC
Q 018005          292 ERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--------------PEILYYNVARRTWHWLPSCPS  350 (362)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--------------~~v~~yd~~~~~w~~~~~~~~  350 (362)
                      ..+|..            +....++..++.||+.++..              ..+.+||+++++|+.+...|.
T Consensus       228 ~~~p~~------------r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~r  288 (315)
T 4asc_A          228 EAFPQE------------RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIA  288 (315)
T ss_dssp             CCCSSC------------CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEESCSS
T ss_pred             CCCCCc------------ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhccCCc
Confidence            887621            12234455678888876532              348999999999999955544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.91  E-value=8.1e-22  Score=177.19  Aligned_cols=240  Identities=14%  Similarity=0.224  Sum_probs=171.6

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC-----------CCeEEEEeCCcCceeeccCCCCCCcc
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----------SSSFLVCNLVTLSSRTIDFPTYPFDF  145 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----------~~~~~v~NP~t~~w~~lP~~~~~~~~  145 (362)
                      .+..|||..++|...+++.  +.++....++..+|.|++.++.           ...+.+|||.+++|..+++++.++..
T Consensus        25 ~~~~yd~~~~~W~~~~~~~--~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAE--QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECT--TSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             ceEEECCCCCceecccCCc--cCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            4678999999998865442  2345555667778877666551           01388999999999999998887766


Q ss_pred             ceEEEEeCCCceEEEEEeeecC-----CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC-----
Q 018005          146 ELLTLVSTPSGYKIFMLFAKSF-----PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----  215 (362)
Q Consensus       146 ~~~~~~~~~~~ykv~~~~~~~~-----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-----  215 (362)
                      .+++....    +|+++||...     ...+++||+.+++|+..+  .+|.    .+..+..+.++|++|++++.     
T Consensus       103 ~~~~~~~~----~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          103 FGLGEVDD----KIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK--NLPI----KVYGHNVISHNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CEEEEETT----EEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC--CCSS----CEESCEEEEETTEEEEECCEESSSC
T ss_pred             cceEEECC----EEEEEcCccCCCCcccceEEEEeCCCCCEeECC--CCCC----cccccEEEEECCEEEEEcCCCCCCC
Confidence            55554432    7888888642     137999999999999988  6765    23567788899999999863     


Q ss_pred             -CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCC-CCEEEEec
Q 018005          216 -PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG-GNWIEVER  293 (362)
Q Consensus       216 -~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v~~  293 (362)
                       ...+.+||+.+++|+.+. +       +|..+..+.+++   .+|+||++||.........+++|  |.. ++|+++..
T Consensus       173 ~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~~  239 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLA-P-------MKTPRSMFGVAI---HKGKIVIAGGVTEDGLSASVEAF--DLKTNKWEVMTE  239 (318)
T ss_dssp             BCCCEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEEEEEETTEEEEEEEEE--ETTTCCEEECCC
T ss_pred             ccceEEEEcCCCCEEEECC-C-------CCCCcccceEEE---ECCEEEEEcCcCCCCccceEEEE--ECCCCeEEECCC
Confidence             246899999999999864 4       666666666664   89999999997643333444555  544 45999988


Q ss_pred             ccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec--------------CCeEEEEECCCCceEEcCCCCCCCCCC
Q 018005          294 VPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT--------------WPEILYYNVARRTWHWLPSCPSLPHKW  355 (362)
Q Consensus       294 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------~~~v~~yd~~~~~w~~~~~~~~~~~~~  355 (362)
                      +|..            +....++..++.||+.++.              ...+.+||+++++|+.+  +|......
T Consensus       240 ~p~~------------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~  301 (318)
T 2woz_A          240 FPQE------------RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYAS  301 (318)
T ss_dssp             CSSC------------CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGT
T ss_pred             CCCc------------ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh--cccccccc
Confidence            7631            1223445567888887643              24589999999999999  44443333

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.91  E-value=1e-22  Score=181.50  Aligned_cols=246  Identities=13%  Similarity=0.118  Sum_probs=179.6

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC-----CCeEEEEeCCcCc---eeeccCCCCCCccce
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS-----SSSFLVCNLVTLS---SRTIDFPTYPFDFEL  147 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~-----~~~~~v~NP~t~~---w~~lP~~~~~~~~~~  147 (362)
                      ..+..||+..++|..++   .+|.++.....+..+|.|++.++.     .+.+++|||.+++   |..+++++.++....
T Consensus        31 ~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG  107 (301)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred             eEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence            46788999999999986   233344444455567777776652     2479999999999   999999888776665


Q ss_pred             EEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC-----CcEE
Q 018005          148 LTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSI  219 (362)
Q Consensus       148 ~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-----~~~i  219 (362)
                      .+....    +++++||...   ...+++||+.+++|+..+  .+|.    .+..+..+.++|++|++++.     ...+
T Consensus       108 ~~~~~~----~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          108 ATTLGD----MIYVSGGFDGSRRHTSMERYDPNIDQWSMLG--DMQT----AREGAGLVVASGVIYCLGGYDGLNILNSV  177 (301)
T ss_dssp             EEEETT----EEEEECCBCSSCBCCEEEEEETTTTEEEEEE--ECSS----CCBSCEEEEETTEEEEECCBCSSCBCCCE
T ss_pred             EEEECC----EEEEEcccCCCcccceEEEEcCCCCeEEECC--CCCC----CcccceEEEECCEEEEECCCCCCcccceE
Confidence            554432    7888887543   348999999999999988  6664    33567788889999999863     2468


Q ss_pred             EEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHH
Q 018005          220 VRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMC  299 (362)
Q Consensus       220 ~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~  299 (362)
                      .+||+.+++|+.+. +       +|..+..+.++.   .+|+||++|+.........+.+|++ ..++|+++..+|..  
T Consensus       178 ~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~i~v~GG~~~~~~~~~v~~yd~-~~~~W~~~~~~p~~--  243 (301)
T 2vpj_A          178 EKYDPHTGHWTNVT-P-------MATKRSGAGVAL---LNDHIYVVGGFDGTAHLSSVEAYNI-RTDSWTTVTSMTTP--  243 (301)
T ss_dssp             EEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCBCSSSBCCCEEEEET-TTTEEEEECCCSSC--
T ss_pred             EEEeCCCCcEEeCC-C-------CCcccccceEEE---ECCEEEEEeCCCCCcccceEEEEeC-CCCcEEECCCCCCc--
Confidence            99999999999873 4       666666666664   8999999999754333455555544 23459999887631  


Q ss_pred             HHhhhccccCCccEEEEeeCCEEEEEeecC-----CeEEEEECCCCceEEcCCCCCCCCCCCcc
Q 018005          300 RKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----PEILYYNVARRTWHWLPSCPSLPHKWSCG  358 (362)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~v~~yd~~~~~w~~~~~~~~~~~~~~~~  358 (362)
                                .....++..++.||+.++..     ..+++||+++++|+.++.+|.+....+|.
T Consensus       244 ----------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~  297 (301)
T 2vpj_A          244 ----------RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVC  297 (301)
T ss_dssp             ----------CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEEEEEEEEEEEESCEEE
T ss_pred             ----------ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEEEcCCCCcccccceEE
Confidence                      12234455678899887543     35899999999999999888776655554

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.84  E-value=6.5e-19  Score=157.23  Aligned_cols=204  Identities=15%  Similarity=0.217  Sum_probs=151.8

Q ss_pred             CCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec--CCCeEEEEeCCCCcccccccCCCCccccccC
Q 018005          120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       120 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~--~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~  197 (362)
                      .+.+.+|||.+++|..+++++.++.....+....    +++++||..  ....+++||+.+++|+..+  .+|.    .+
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~----~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r   92 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDN----VVYILGGSQLFPIKRMDCYNVVKDSWYSKL--GPPT----PR   92 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETT----EEEEECCBSSSBCCEEEEEETTTTEEEEEE--CCSS----CC
T ss_pred             CceEEEecCCCCCEecCCCCCcccceeEEEEECC----EEEEEeCCCCCCcceEEEEeCCCCeEEECC--CCCc----cc
Confidence            4679999999999999999888776655554433    788888864  2348999999999999988  6765    34


Q ss_pred             CCcccEEECCEEEEEecCC------cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005          198 SHQEGVFYKGSLYFTTPEP------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN  271 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~~------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~  271 (362)
                      ..+..+.++|++|++++..      ..+.+||+.+++|+.+. +       +|..+..+.++.   .+|+||++++....
T Consensus        93 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~  161 (306)
T 3ii7_A           93 DSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP-S-------MLTQRCSHGMVE---ANGLIYVCGGSLGN  161 (306)
T ss_dssp             BSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCEESC
T ss_pred             cceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-C-------CcCCcceeEEEE---ECCEEEEECCCCCC
Confidence            5677888999999998732      46899999999999863 4       676666666664   89999999997643


Q ss_pred             Cc----cceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCce
Q 018005          272 GI----STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTW  342 (362)
Q Consensus       272 ~~----~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w  342 (362)
                      ..    ...+++|++ ..++|+++..+|..            .....++..++.||+.++.     ...+.+||+++++|
T Consensus       162 ~~~~~~~~~~~~yd~-~~~~W~~~~~~p~~------------r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W  228 (306)
T 3ii7_A          162 NVSGRVLNSCEVYDP-ATETWTELCPMIEA------------RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEW  228 (306)
T ss_dssp             TTTCEECCCEEEEET-TTTEEEEECCCSSC------------CBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEE
T ss_pred             CCcccccceEEEeCC-CCCeEEECCCccch------------hhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcE
Confidence            32    345555544 23459999887631            1223445567888888653     24689999999999


Q ss_pred             EEcCCCCCCCCCCCc
Q 018005          343 HWLPSCPSLPHKWSC  357 (362)
Q Consensus       343 ~~~~~~~~~~~~~~~  357 (362)
                      +.++.+|.+...+.+
T Consensus       229 ~~~~~~p~~r~~~~~  243 (306)
T 3ii7_A          229 KMVSPMPWKGVTVKC  243 (306)
T ss_dssp             EECCCCSCCBSCCEE
T ss_pred             EECCCCCCCccceeE
Confidence            999998887655544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.84  E-value=4.2e-19  Score=158.73  Aligned_cols=217  Identities=12%  Similarity=0.091  Sum_probs=156.0

Q ss_pred             ecCCceEEEecC----CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeee----c---CCCeEEEEe
Q 018005          107 SSSKGLLCFSLP----SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAK----S---FPNYAFVYD  175 (362)
Q Consensus       107 ~s~~Gll~~~~~----~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~----~---~~~~~~vy~  175 (362)
                      ...++.|++.++    ..+.+.+|||.+++|..+++++.++....++....    +|+++||.    .   ....+++||
T Consensus        21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~----~lyv~GG~~~~~~~~~~~~~~~~~d   96 (308)
T 1zgk_A           21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGG----LLYAVGGRNNSPDGNTDSSALDCYN   96 (308)
T ss_dssp             CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT----EEEEECCEEEETTEEEECCCEEEEE
T ss_pred             cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECC----EEEEECCCcCCCCCCeecceEEEEC
Confidence            344454444443    23578999999999999998887776555544332    78888876    2   134799999


Q ss_pred             CCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC-----CcEEEEEEcCCCeeecCCCCCcccccCCCCccccc
Q 018005          176 STDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFF  250 (362)
Q Consensus       176 s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~  250 (362)
                      +.+++|+..+  .+|.    .+..+..+.++|++|++++.     ...+.+||+.+++|+.+. +       +|..+..+
T Consensus        97 ~~~~~W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~  162 (308)
T 1zgk_A           97 PMTNQWSPCA--PMSV----PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-P-------MLTRRIGV  162 (308)
T ss_dssp             TTTTEEEECC--CCSS----CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECC-C-------CSSCCBSC
T ss_pred             CCCCeEeECC--CCCc----CccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECC-C-------CCccccce
Confidence            9999999998  6765    33567788889999999863     246899999999999864 4       66666666


Q ss_pred             ceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec--
Q 018005          251 RLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT--  328 (362)
Q Consensus       251 ~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--  328 (362)
                      .++.   .+|+||++|+.........+++|++ ..++|+++..+|..            +....++..++.||+.++.  
T Consensus       163 ~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~  226 (308)
T 1zgk_A          163 GVAV---LNRLLYAVGGFDGTNRLNSAECYYP-ERNEWRMITAMNTI------------RSGAGVCVLHNCIYAAGGYDG  226 (308)
T ss_dssp             EEEE---ETTEEEEECCBCSSCBCCCEEEEET-TTTEEEECCCCSSC------------CBSCEEEEETTEEEEECCBCS
T ss_pred             EEEE---ECCEEEEEeCCCCCCcCceEEEEeC-CCCeEeeCCCCCCc------------cccceEEEECCEEEEEeCCCC
Confidence            6664   8999999999754433455555544 23459999887631            1223444568889988754  


Q ss_pred             ---CCeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          329 ---WPEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       329 ---~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                         ...+++||+++++|+.++.+|.+....++
T Consensus       227 ~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  258 (308)
T 1zgk_A          227 QDQLNSVERYDVETETWTFVAPMKHRRSALGI  258 (308)
T ss_dssp             SSBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             CCccceEEEEeCCCCcEEECCCCCCCccceEE
Confidence               24699999999999999988876654443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.83  E-value=1.3e-18  Score=155.04  Aligned_cols=201  Identities=9%  Similarity=0.099  Sum_probs=148.9

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccC
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~  197 (362)
                      +.+.++||.+++|..+++++.++....++....    +|+++||...   ...+++||+.+++|+..+  .+|.    .+
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~----~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~----~r   99 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAG----LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA--NMRD----RR   99 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETT----EEEEESCBCSSSBCCCEEEEETTTTEEEEEC--CCSS----CC
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECC----EEEEEeCcCCCccccceEEECCCCCceeeCC--CCCc----cc
Confidence            578999999999999998887766555444322    7888888543   347999999999999998  6765    34


Q ss_pred             CCcccEEECCEEEEEecCC-----cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCC
Q 018005          198 SHQEGVFYKGSLYFTTPEP-----FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNG  272 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~~-----~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~  272 (362)
                      ..+..+.++|++|++++..     ..+.+||+.+++|+.+. +       +|..+..+.+++   .+|+||++|+.....
T Consensus       100 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~---~~~~iyv~GG~~~~~  168 (302)
T 2xn4_A          100 STLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA-P-------MNTRRSSVGVGV---VGGLLYAVGGYDVAS  168 (302)
T ss_dssp             BSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC-C-------CSSCCBSCEEEE---ETTEEEEECCEETTT
T ss_pred             cceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC-C-------CCCcccCceEEE---ECCEEEEEeCCCCCC
Confidence            5677888999999998732     46899999999999863 4       666666666664   899999999976432


Q ss_pred             c--cceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEE
Q 018005          273 I--STTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHW  344 (362)
Q Consensus       273 ~--~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~  344 (362)
                      .  ...+++|  |... +|+++..+|..            .....++..++.||+.++.     ...+..||+++++|+.
T Consensus       169 ~~~~~~~~~y--d~~~~~W~~~~~~p~~------------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  234 (302)
T 2xn4_A          169 RQCLSTVECY--NATTNEWTYIAEMSTR------------RSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQ  234 (302)
T ss_dssp             TEECCCEEEE--ETTTTEEEEECCCSSC------------CBSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTTEEEE
T ss_pred             CccccEEEEE--eCCCCcEEECCCCccc------------cccccEEEECCEEEEECCCCCCcccceEEEEeCCCCCEee
Confidence            1  3445555  5444 49999887621            1223445567889988754     2469999999999999


Q ss_pred             cCCCCCCCCCCC
Q 018005          345 LPSCPSLPHKWS  356 (362)
Q Consensus       345 ~~~~~~~~~~~~  356 (362)
                      ++.+|.+.....
T Consensus       235 ~~~~~~~r~~~~  246 (302)
T 2xn4_A          235 VADMNMCRRNAG  246 (302)
T ss_dssp             ECCCSSCCBSCE
T ss_pred             CCCCCCccccCe
Confidence            998887654433

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.83  E-value=1.5e-18  Score=154.39  Aligned_cols=215  Identities=13%  Similarity=0.108  Sum_probs=155.2

Q ss_pred             CCceEEEecC-C-----CCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCC
Q 018005          109 SKGLLCFSLP-S-----SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQ  179 (362)
Q Consensus       109 ~~Gll~~~~~-~-----~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~  179 (362)
                      .+|.+++.++ .     ...+.+|||.+++|..+++++.++.....+....    +++++||...   ...+++||+.++
T Consensus        13 ~~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~----~l~v~GG~~~~~~~~~~~~~d~~~~   88 (301)
T 2vpj_A           13 ANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD----RIYVIGGYDGRSRLSSVECLDYTAD   88 (301)
T ss_dssp             CCEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETT----EEEEECCBCSSCBCCCEEEEETTCC
T ss_pred             CCCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEECC----EEEEEcCCCCCccCceEEEEECCCC
Confidence            4555555444 1     2478999999999999998877665554443332    7888887542   348999999999


Q ss_pred             c---ccccccCCCCccccccCCCcccEEECCEEEEEecC-----CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccc
Q 018005          180 S---WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFR  251 (362)
Q Consensus       180 ~---W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~  251 (362)
                      +   |+..+  .+|.    .+..+..+.++|++|++++.     ...+.+||+.+++|+.+. +       +|..+..+.
T Consensus        89 ~~~~W~~~~--~~p~----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~  154 (301)
T 2vpj_A           89 EDGVWYSVA--PMNV----RRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG-D-------MQTAREGAG  154 (301)
T ss_dssp             TTCCCEEEC--CCSS----CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE-E-------CSSCCBSCE
T ss_pred             CCCeeEECC--CCCC----CccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECC-C-------CCCCcccce
Confidence            9   99998  6765    34567788889999999863     246899999999999863 4       666666666


Q ss_pred             eeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec---
Q 018005          252 LVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT---  328 (362)
Q Consensus       252 lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---  328 (362)
                      +++   .+|+||++|+.........+++|++ ..++|+++..+|..            .....++..++.||+.++.   
T Consensus       155 ~~~---~~~~iyv~GG~~~~~~~~~~~~~d~-~~~~W~~~~~~p~~------------r~~~~~~~~~~~i~v~GG~~~~  218 (301)
T 2vpj_A          155 LVV---ASGVIYCLGGYDGLNILNSVEKYDP-HTGHWTNVTPMATK------------RSGAGVALLNDHIYVVGGFDGT  218 (301)
T ss_dssp             EEE---ETTEEEEECCBCSSCBCCCEEEEET-TTTEEEEECCCSSC------------CBSCEEEEETTEEEEECCBCSS
T ss_pred             EEE---ECCEEEEECCCCCCcccceEEEEeC-CCCcEEeCCCCCcc------------cccceEEEECCEEEEEeCCCCC
Confidence            664   8999999999654333455555544 23459999877631            1223445567889988754   


Q ss_pred             --CCeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          329 --WPEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       329 --~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                        ...+.+||+++++|+.++.+|.+...+++
T Consensus       219 ~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  249 (301)
T 2vpj_A          219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA  249 (301)
T ss_dssp             SBCCCEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             cccceEEEEeCCCCcEEECCCCCCcccceeE
Confidence              34699999999999999988876654443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.83  E-value=5.4e-19  Score=161.27  Aligned_cols=231  Identities=12%  Similarity=0.096  Sum_probs=156.1

Q ss_pred             CCCCCceEEEecCCceEEEecC-CCCeEEEEeCC--cCceeeccCCC-CCCccceEEEEeCCCceEEEEEeee-c-----
Q 018005           97 LLLPSAATLLSSSKGLLCFSLP-SSSSFLVCNLV--TLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAK-S-----  166 (362)
Q Consensus        97 ~~~~~~~~~~~s~~Gll~~~~~-~~~~~~v~NP~--t~~w~~lP~~~-~~~~~~~~~~~~~~~~ykv~~~~~~-~-----  166 (362)
                      +|.++.....+..+|.|++.++ ..+.++++|+.  +++|..+++++ .++...+.+....    +|+++||. .     
T Consensus         6 lP~~r~~~~~~~~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~~~----~lyv~GG~~~~~~~~   81 (357)
T 2uvk_A            6 TPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDG----NLYVFGGIGKNSEGL   81 (357)
T ss_dssp             CSSCCCSCEEEEETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEETT----EEEEECCEEECTTSC
T ss_pred             CCccccceEEEEECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEECC----EEEEEcCCCCCCCcc
Confidence            3444444444555887777765 34589999998  49999999988 6666555554432    78888886 2     


Q ss_pred             --CCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCC----------------------------
Q 018005          167 --FPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP----------------------------  216 (362)
Q Consensus       167 --~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~----------------------------  216 (362)
                        ....+++||+.+++|+..+  .+++  . .+..+.++.++|++|++++..                            
T Consensus        82 ~~~~~~v~~yd~~~~~W~~~~--~~~p--~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (357)
T 2uvk_A           82 TQVFNDVHKYNPKTNSWVKLM--SHAP--M-GMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY  156 (357)
T ss_dssp             EEECCCEEEEETTTTEEEECS--CCCS--S-CCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ceeeccEEEEeCCCCcEEECC--CCCC--c-ccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhh
Confidence              1348999999999999998  6652  1 235566778999999998742                            


Q ss_pred             -----------cEEEEEEcCCCeeecCCCCCcccccCCCCcccc-cceeecccCCCeEEEEEEeecCC-ccceEEEEEEC
Q 018005          217 -----------FSIVRFDLENGIWETPNDANDHMTMMLPHELTF-FRLVNDGEESNKLYLIGGVGRNG-ISTTMKLWELG  283 (362)
Q Consensus       217 -----------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~-~~lv~~~~~~G~L~vv~~~~~~~-~~~~i~vw~l~  283 (362)
                                 ..+.+||+.+++|+.+. +       +|..... +.+++   .+|+||++||..... ....+.+|.++
T Consensus       157 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~-~-------~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~v~~~d~d  225 (357)
T 2uvk_A          157 FDKKAEDYFFNKFLLSFDPSTQQWSYAG-E-------SPWYGTAGAAVVN---KGDKTWLINGEAKPGLRTDAVFELDFT  225 (357)
T ss_dssp             HSSCGGGGCCCCEEEEEETTTTEEEEEE-E-------CSSCCCBSCEEEE---ETTEEEEECCEEETTEECCCEEEEECC
T ss_pred             ccccccccCCcccEEEEeCCCCcEEECC-C-------CCCCCcccccEEE---ECCEEEEEeeecCCCcccCceEEEEec
Confidence                       47999999999999863 4       5544333 56663   899999999865432 13345555554


Q ss_pred             CCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------------------CeEEEEECCCC
Q 018005          284 CGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------------------PEILYYNVARR  340 (362)
Q Consensus       284 ~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------------------~~v~~yd~~~~  340 (362)
                      ... .|+++..+|...          ......++..++.||+.++..                      ..+.+||++++
T Consensus       226 ~~~~~W~~~~~~~~~~----------~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~  295 (357)
T 2uvk_A          226 GNNLKWNKLAPVSSPD----------GVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG  295 (357)
T ss_dssp             ---CEEEECCCSSTTT----------CCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC--
T ss_pred             CCCCcEEecCCCCCCc----------ccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC
Confidence            344 499998875211          112233556778899887531                      24799999999


Q ss_pred             ceEEcCCCCCCCCCCCc
Q 018005          341 TWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       341 ~w~~~~~~~~~~~~~~~  357 (362)
                      +|+.++.+|.+....+|
T Consensus       296 ~W~~~~~~p~~r~~~~~  312 (357)
T 2uvk_A          296 KWDKSGELSQGRAYGVS  312 (357)
T ss_dssp             -CEEEEECSSCCBSSEE
T ss_pred             ceeeCCCCCCCccccee
Confidence            99999988887665544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.82  E-value=5.5e-18  Score=154.58  Aligned_cols=240  Identities=13%  Similarity=0.079  Sum_probs=157.7

Q ss_pred             ceeeeeeCC--CCCeEeecCCcCCC-CCCceEEEecCCceEEEecCC----------CCeEEEEeCCcCceeeccCCC-C
Q 018005           76 DQYPLYDST--HGTWRRLSLPYSLL-LPSAATLLSSSKGLLCFSLPS----------SSSFLVCNLVTLSSRTIDFPT-Y  141 (362)
Q Consensus        76 ~~~~~~d~~--~~~w~~~~~~~~~~-~~~~~~~~~s~~Gll~~~~~~----------~~~~~v~NP~t~~w~~lP~~~-~  141 (362)
                      ..+..||+.  .++|..++   ++| .++....++..+|.|++.++.          .+.+.+|||.|++|..+++++ .
T Consensus        31 ~~~~~~d~~~~~~~W~~~~---~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~  107 (357)
T 2uvk_A           31 TAWYKLDTQAKDKKWTALA---AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPM  107 (357)
T ss_dssp             TCEEEEETTSSSCCEEECC---CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSS
T ss_pred             CeEEEEccccCCCCeeECC---CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCc
Confidence            467889997  48999886   334 345445556668877777654          147899999999999999887 4


Q ss_pred             CCccceEEEEeCCCceEEEEEeeecC-------------------------------------CCeEEEEeCCCCccccc
Q 018005          142 PFDFELLTLVSTPSGYKIFMLFAKSF-------------------------------------PNYAFVYDSTDQSWSKF  184 (362)
Q Consensus       142 ~~~~~~~~~~~~~~~ykv~~~~~~~~-------------------------------------~~~~~vy~s~~~~W~~~  184 (362)
                      ++.....+....    +|+++||...                                     ...+++||+.+++|+..
T Consensus       108 ~r~~~~~~~~~~----~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  183 (357)
T 2uvk_A          108 GMAGHVTFVHNG----KAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA  183 (357)
T ss_dssp             CCSSEEEEEETT----EEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEE
T ss_pred             ccccceEEEECC----EEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEEC
Confidence            444433333222    7888887531                                     35899999999999998


Q ss_pred             ccCCCCccccccCCCcccEEECCEEEEEecC------CcEEEEEEc--CCCeeecCCCCCcccccCCCCcccccceeecc
Q 018005          185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPE------PFSIVRFDL--ENGIWETPNDANDHMTMMLPHELTFFRLVNDG  256 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~------~~~i~~~D~--~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~  256 (362)
                      .  .+|.   +.+..+..+.++|++|++++.      ...+.+||+  .+++|+.+. +.     ..|..+..+.+++  
T Consensus       184 ~--~~p~---~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~-~~-----~~~~~~~~~~~~~--  250 (357)
T 2uvk_A          184 G--ESPW---YGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLA-PV-----SSPDGVAGGFAGI--  250 (357)
T ss_dssp             E--ECSS---CCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECC-CS-----STTTCCBSCEEEE--
T ss_pred             C--CCCC---CCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecC-CC-----CCCcccccceEEE--
Confidence            8  6664   122346788889999999863      235788986  899999864 30     0344444455553  


Q ss_pred             cCCCeEEEEEEeecCC---------------c--cceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeC
Q 018005          257 EESNKLYLIGGVGRNG---------------I--STTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ  319 (362)
Q Consensus       257 ~~~G~L~vv~~~~~~~---------------~--~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~  319 (362)
                       .+|+||++||.....               .  ...+++|.++ .++|+++..+|..            +....++..+
T Consensus       251 -~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~-~~~W~~~~~~p~~------------r~~~~~~~~~  316 (357)
T 2uvk_A          251 -SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH-NGKWDKSGELSQG------------RAYGVSLPWN  316 (357)
T ss_dssp             -ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSC------------CBSSEEEEET
T ss_pred             -ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC-CCceeeCCCCCCC------------cccceeEEeC
Confidence             899999999965321               0  1245555442 3459999888631            1223445567


Q ss_pred             CEEEEEeecC------CeEEEEECCCCceEEcCCCC
Q 018005          320 GMICVCCYTW------PEILYYNVARRTWHWLPSCP  349 (362)
Q Consensus       320 ~~i~~~~~~~------~~v~~yd~~~~~w~~~~~~~  349 (362)
                      +.||+.++..      ..++.+++++++|......|
T Consensus       317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~  352 (357)
T 2uvk_A          317 NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH  352 (357)
T ss_dssp             TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred             CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence            8888887532      24889999999999986554

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.80  E-value=7e-18  Score=151.22  Aligned_cols=210  Identities=16%  Similarity=0.190  Sum_probs=146.1

Q ss_pred             eEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec----C--C---CeEEEEeCCCCccc
Q 018005          112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS----F--P---NYAFVYDSTDQSWS  182 (362)
Q Consensus       112 ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~----~--~---~~~~vy~s~~~~W~  182 (362)
                      .+++.++  ..+.+|||.|++|.. ++++.+..+...+.+..  .-+|+++||..    .  .   ..+++||+.+++|+
T Consensus         6 ~l~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~   80 (315)
T 4asc_A            6 LIFMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL   80 (315)
T ss_dssp             EEEEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE
T ss_pred             EEEEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEE
Confidence            3444443  679999999999987 55543333333333322  22677777741    1  1   14899999999999


Q ss_pred             ccccCCCCccccccCCCcccEEECCEEEEEecC--------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceee
Q 018005          183 KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE--------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVN  254 (362)
Q Consensus       183 ~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~--------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~  254 (362)
                      ..+  .+|.    .+..+..+.++|++|++++.        ...+.+||+.+++|+.+. +       +|..+..+.+++
T Consensus        81 ~~~--~~p~----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~-~-------~p~~r~~~~~~~  146 (315)
T 4asc_A           81 GMP--PLPS----PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESD-P-------LPYVVYGHTVLS  146 (315)
T ss_dssp             ECC--CBSS----CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE
T ss_pred             ECC--CCCc----chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECC-C-------CCCcccceeEEE
Confidence            988  6765    33567788899999999872        146899999999999864 4       677666677764


Q ss_pred             cccCCCeEEEEEEeec-CCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC---
Q 018005          255 DGEESNKLYLIGGVGR-NGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW---  329 (362)
Q Consensus       255 ~~~~~G~L~vv~~~~~-~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  329 (362)
                         .+|+||++||... ......+++|  |... +|+++..+|.            .+....++..++.||+.++..   
T Consensus       147 ---~~~~iyv~GG~~~~~~~~~~~~~y--d~~~~~W~~~~~~p~------------~r~~~~~~~~~~~iyv~GG~~~~~  209 (315)
T 4asc_A          147 ---HMDLVYVIGGKGSDRKCLNKMCVY--DPKKFEWKELAPMQT------------ARSLFGATVHDGRIIVAAGVTDTG  209 (315)
T ss_dssp             ---ETTEEEEECCBCTTSCBCCCEEEE--ETTTTEEEECCCCSS------------CCBSCEEEEETTEEEEEEEECSSS
T ss_pred             ---ECCEEEEEeCCCCCCcccceEEEE--eCCCCeEEECCCCCC------------chhceEEEEECCEEEEEeccCCCC
Confidence               8999999999632 2223445555  5444 4999988763            112234455678888887542   


Q ss_pred             --CeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          330 --PEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       330 --~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                        ..+.+||+++++|+.++.+|.+...+++
T Consensus       210 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  239 (315)
T 4asc_A          210 LTSSAEVYSITDNKWAPFEAFPQERSSLSL  239 (315)
T ss_dssp             EEEEEEEEETTTTEEEEECCCSSCCBSCEE
T ss_pred             ccceEEEEECCCCeEEECCCCCCcccceeE
Confidence              2589999999999999988877655443

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.78  E-value=4.9e-17  Score=145.90  Aligned_cols=210  Identities=12%  Similarity=0.229  Sum_probs=144.9

Q ss_pred             ceEEEecCCCCeEEEEeCCcCceeeccCC-CCCCccceEEEEeCCCceEEEEEeeec----C-----CCeEEEEeCCCCc
Q 018005          111 GLLCFSLPSSSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKS----F-----PNYAFVYDSTDQS  180 (362)
Q Consensus       111 Gll~~~~~~~~~~~v~NP~t~~w~~lP~~-~~~~~~~~~~~~~~~~~ykv~~~~~~~----~-----~~~~~vy~s~~~~  180 (362)
                      +.|++.++  ..+.+|||.+++|...+.+ +.++..  .+++..  .-+|+++||..    .     ...+++||+.+++
T Consensus        16 ~~i~~~GG--~~~~~yd~~~~~W~~~~~~~~~~r~~--~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~   89 (318)
T 2woz_A           16 DLILLVND--TAAVAYDPMENECYLTALAEQIPRNH--SSIVTQ--QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSE   89 (318)
T ss_dssp             EEEEEECS--SEEEEEETTTTEEEEEEECTTSCSSE--EEEECS--SSCEEEEESSCC-------CCCBEEEEEETTTTE
T ss_pred             chhhhccc--cceEEECCCCCceecccCCccCCccc--eEEEEE--CCEEEEECCcccCccccCCCccccEEEEeCCCCc
Confidence            45555554  3589999999999985432 123333  333321  23688888731    1     1248999999999


Q ss_pred             ccccccCCCCccccccCCCcccEEECCEEEEEecCC-------cEEEEEEcCCCeeecCCCCCcccccCCCCccccccee
Q 018005          181 WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEP-------FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLV  253 (362)
Q Consensus       181 W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~-------~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv  253 (362)
                      |+..+  .+|.    .+..+..+.++|++|++++..       ..+.+||+.+++|+.+. +       +|..+..+.++
T Consensus        90 W~~~~--~~p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~-~-------~p~~r~~~~~~  155 (318)
T 2woz_A           90 WVGLP--PLPS----ARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVK-N-------LPIKVYGHNVI  155 (318)
T ss_dssp             EEECS--CBSS----CBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEEC-C-------CSSCEESCEEE
T ss_pred             EEECC--CCCc----cccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECC-C-------CCCcccccEEE
Confidence            99988  6765    335677888999999998732       46899999999999864 4       67666666776


Q ss_pred             ecccCCCeEEEEEEeecC-CccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC--
Q 018005          254 NDGEESNKLYLIGGVGRN-GISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW--  329 (362)
Q Consensus       254 ~~~~~~G~L~vv~~~~~~-~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--  329 (362)
                      +   .+|+||++||.... .....+++|  |... +|+++..+|.            .+....++..++.||+.++..  
T Consensus       156 ~---~~~~iyv~GG~~~~~~~~~~~~~y--d~~~~~W~~~~~~p~------------~r~~~~~~~~~~~iyv~GG~~~~  218 (318)
T 2woz_A          156 S---HNGMIYCLGGKTDDKKCTNRVFIY--NPKKGDWKDLAPMKT------------PRSMFGVAIHKGKIVIAGGVTED  218 (318)
T ss_dssp             E---ETTEEEEECCEESSSCBCCCEEEE--ETTTTEEEEECCCSS------------CCBSCEEEEETTEEEEEEEEETT
T ss_pred             E---ECCEEEEEcCCCCCCCccceEEEE--cCCCCEEEECCCCCC------------CcccceEEEECCEEEEEcCcCCC
Confidence            4   89999999997532 123445555  5444 4999988762            112234455678888887532  


Q ss_pred             ---CeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          330 ---PEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       330 ---~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                         ..+.+||+++++|+.++.+|.+...+++
T Consensus       219 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~  249 (318)
T 2woz_A          219 GLSASVEAFDLKTNKWEVMTEFPQERSSISL  249 (318)
T ss_dssp             EEEEEEEEEETTTCCEEECCCCSSCCBSCEE
T ss_pred             CccceEEEEECCCCeEEECCCCCCcccceEE
Confidence               3589999999999999998876554443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.71  E-value=4.8e-16  Score=153.04  Aligned_cols=246  Identities=11%  Similarity=0.045  Sum_probs=158.0

Q ss_pred             eeeeeCCCCCeEeec-CCcCCCCCCceEEEecCCceEEEecCCC-----------CeEEEEeCCcCceeeccCCCCCCcc
Q 018005           78 YPLYDSTHGTWRRLS-LPYSLLLPSAATLLSSSKGLLCFSLPSS-----------SSFLVCNLVTLSSRTIDFPTYPFDF  145 (362)
Q Consensus        78 ~~~~d~~~~~w~~~~-~~~~~~~~~~~~~~~s~~Gll~~~~~~~-----------~~~~v~NP~t~~w~~lP~~~~~~~~  145 (362)
                      +..|||..++|..+. +|    .......+...+|.|++.++..           ..+.+|||.|++|..++.++.++..
T Consensus       168 ~~~~dp~~~~W~~~~~~P----~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~  243 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLP----IVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDM  243 (656)
T ss_dssp             CCCCCTTSCEEEEEEECS----SCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCC
T ss_pred             cccCCCCCCeeeeeccCC----CCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCC
Confidence            456899999999874 44    2222222333377666654311           2688999999999999887666544


Q ss_pred             ce--EEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE-CCEEEEEecC-C-----
Q 018005          146 EL--LTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGSLYFTTPE-P-----  216 (362)
Q Consensus       146 ~~--~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~ly~~~~~-~-----  216 (362)
                      .+  .++..   +-+|+++||... ..+++||+.+++|+..+  .||.    .+..+..+.+ +|++|++++. .     
T Consensus       244 ~~~~~~~~~---~g~lyv~GG~~~-~~v~~yd~~t~~W~~~~--~~~~----~R~~~s~~~~~dg~iyv~GG~~~~~~~~  313 (656)
T 1k3i_A          244 FCPGISMDG---NGQIVVTGGNDA-KKTSLYDSSSDSWIPGP--DMQV----ARGYQSSATMSDGRVFTIGGSWSGGVFE  313 (656)
T ss_dssp             SSCEEEECT---TSCEEEECSSST-TCEEEEEGGGTEEEECC--CCSS----CCSSCEEEECTTSCEEEECCCCCSSSCC
T ss_pred             ccccccCCC---CCCEEEeCCCCC-CceEEecCcCCceeECC--CCCc----cccccceEEecCCeEEEEeCcccCCccc
Confidence            33  23222   227888888543 38999999999999988  6765    3345667777 9999999883 1     


Q ss_pred             cEEEEEEcCCCeeecCC----CCCcccccCCCCc----------------------------------------------
Q 018005          217 FSIVRFDLENGIWETPN----DANDHMTMMLPHE----------------------------------------------  246 (362)
Q Consensus       217 ~~i~~~D~~~~~w~~~~----~p~~~~~~~~p~~----------------------------------------------  246 (362)
                      ..+.+||+.+++|+.+.    .|       ++..                                              
T Consensus       314 ~~~e~yd~~t~~W~~~~~~~~~p-------~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~  386 (656)
T 1k3i_A          314 KNGEVYSPSSKTWTSLPNAKVNP-------MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG  386 (656)
T ss_dssp             CCEEEEETTTTEEEEETTSCSGG-------GCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred             ccceEeCCCCCcceeCCCccccc-------cccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCC
Confidence            46899999999999752    12       1110                                              


Q ss_pred             ------------cccccee-ecccCCCeEEEEEEeecCC---ccc-eEEEEEECCCC-CEEEEe--cccHHHHHHhhhcc
Q 018005          247 ------------LTFFRLV-NDGEESNKLYLIGGVGRNG---IST-TMKLWELGCGG-NWIEVE--RVPEMMCRKFMSVC  306 (362)
Q Consensus       247 ------------~~~~~lv-~~~~~~G~L~vv~~~~~~~---~~~-~i~vw~l~~~~-~W~~v~--~~p~~~~~~~~~~~  306 (362)
                                  .....++ ..  .+|+||++||.....   ... ...++.+|... .|.++.  .||.          
T Consensus       387 ~~~~~~~~~~~~~~~~av~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~----------  454 (656)
T 1k3i_A          387 KRQSNRGVAPDAMCGNAVMYDA--VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF----------  454 (656)
T ss_dssp             ECEETTEECCCCBTCEEEEEET--TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS----------
T ss_pred             ccccccccCCCCCCCceEeccC--CCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC----------
Confidence                        0011111 01  589999999853211   112 11334445554 499986  6652          


Q ss_pred             ccCCccEEEEee-CCEEEEEeecC-----------CeEEEEECCCCceEEcCCCCCCCCCCCcc
Q 018005          307 YHNYDHVYCFWH-QGMICVCCYTW-----------PEILYYNVARRTWHWLPSCPSLPHKWSCG  358 (362)
Q Consensus       307 ~~~~~~~~~~~~-~~~i~~~~~~~-----------~~v~~yd~~~~~w~~~~~~~~~~~~~~~~  358 (362)
                        .+....++.. ++.||+.++..           ..+++||+++++|+.++.+|.+..-+++.
T Consensus       455 --~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a  516 (656)
T 1k3i_A          455 --ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSIS  516 (656)
T ss_dssp             --CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEE
T ss_pred             --CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHh
Confidence              1111233333 67788876532           45899999999999999998887777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.68  E-value=5.9e-15  Score=145.77  Aligned_cols=213  Identities=8%  Similarity=0.084  Sum_probs=145.2

Q ss_pred             ecCCceEEEecCC----CCeEEEEeCCcCceeecc-C-----CCCCCccceEEEEeCCCceEEEEEeeecC----CCeEE
Q 018005          107 SSSKGLLCFSLPS----SSSFLVCNLVTLSSRTID-F-----PTYPFDFELLTLVSTPSGYKIFMLFAKSF----PNYAF  172 (362)
Q Consensus       107 ~s~~Gll~~~~~~----~~~~~v~NP~t~~w~~lP-~-----~~~~~~~~~~~~~~~~~~ykv~~~~~~~~----~~~~~  172 (362)
                      ++.++.|++.++.    .+.+.+|||.+++|..++ +     ++.++..+..+....  .-+++++||...    ...++
T Consensus       394 ~~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~  471 (695)
T 2zwa_A          394 DVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNW  471 (695)
T ss_dssp             EECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCE
T ss_pred             EEECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEE
Confidence            3367777777652    357899999999999998 5     344555555444410  127899988643    24799


Q ss_pred             EEeCCCCcccccccCCCCccccccCCCcccEEE-CCEEEEEecCC--cEEEEEEcCCCeeecCCCCCcccccCCCCcccc
Q 018005          173 VYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGSLYFTTPEP--FSIVRFDLENGIWETPNDANDHMTMMLPHELTF  249 (362)
Q Consensus       173 vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~ly~~~~~~--~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~  249 (362)
                      +||+.+++|+..+  .+|.    .+..+.++.+ +|++|++++..  ..+.+||+.+++|+.+...++     +|..+..
T Consensus       472 ~yd~~t~~W~~~~--~~p~----~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~-----~p~~r~~  540 (695)
T 2zwa_A          472 IFDMKTREWSMIK--SLSH----TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDE-----FFQNSLV  540 (695)
T ss_dssp             EEETTTTEEEECC--CCSB----CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSG-----GGGSCCB
T ss_pred             EEeCCCCcEEECC--CCCC----CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCC-----CCCcccc
Confidence            9999999999998  7775    3456667775 99999998742  169999999999998753211     4444444


Q ss_pred             cceeecccCC---CeEEEEEEeecC--CccceEEEEEECCCCC-----EEEEecccHHHHHHhhhccccCCccEEEEeeC
Q 018005          250 FRLVNDGEES---NKLYLIGGVGRN--GISTTMKLWELGCGGN-----WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQ  319 (362)
Q Consensus       250 ~~lv~~~~~~---G~L~vv~~~~~~--~~~~~i~vw~l~~~~~-----W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~  319 (362)
                      +..++   ++   |+||++||...+  .....+.+|+++....     |+++..+|.      .     .+....++..+
T Consensus       541 ~~a~v---~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~------~-----~R~~~~~~~~~  606 (695)
T 2zwa_A          541 SAGLE---FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL------F-----QRYGSQIKYIT  606 (695)
T ss_dssp             SCEEE---EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGG------G-----CCBSCEEEEEE
T ss_pred             eeEEE---EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCC------C-----CcccceEEEeC
Confidence            44332   34   999999996432  2346778888754442     999987641      1     11222334444


Q ss_pred             -CEEEEEeec--------CCeEEEEECCCCceEEcC
Q 018005          320 -GMICVCCYT--------WPEILYYNVARRTWHWLP  346 (362)
Q Consensus       320 -~~i~~~~~~--------~~~v~~yd~~~~~w~~~~  346 (362)
                       +.||+.++.        ...+++||+++++|+.++
T Consensus       607 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~~~~  642 (695)
T 2zwa_A          607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIP  642 (695)
T ss_dssp             TTEEEEECCBCSSCCCCTTTSEEEEETTTTEEEECC
T ss_pred             CCEEEEECCccCCCCCCCCCeEEEEECCCCeEEEee
Confidence             788888753        346999999999999653

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.60  E-value=6.4e-14  Score=138.38  Aligned_cols=201  Identities=8%  Similarity=0.009  Sum_probs=137.8

Q ss_pred             ceeeeeeCCCCCeEeecCC---cCCCCCCceEEEecC--CceEEEecCC------CCeEEEEeCCcCceeeccCCCCCCc
Q 018005           76 DQYPLYDSTHGTWRRLSLP---YSLLLPSAATLLSSS--KGLLCFSLPS------SSSFLVCNLVTLSSRTIDFPTYPFD  144 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~---~~~~~~~~~~~~~s~--~Gll~~~~~~------~~~~~v~NP~t~~w~~lP~~~~~~~  144 (362)
                      ..++.||+..++|..++++   ..+|.++....++..  +|-+++.++.      .+.+.+|||.|++|..+++++.++.
T Consensus       412 ~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~  491 (695)
T 2zwa_A          412 NEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRF  491 (695)
T ss_dssp             CCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCB
T ss_pred             CcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcc
Confidence            4578899999999998733   124455555555555  8877777652      2478999999999999999888777


Q ss_pred             cceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCC---CCccccccCCCcccEEEC---CEEEEEecC---
Q 018005          145 FELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG---FPSMILSQSSHQEGVFYK---GSLYFTTPE---  215 (362)
Q Consensus       145 ~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~---~p~~~~~~~~~~~~v~~~---G~ly~~~~~---  215 (362)
                      .+..+...   .-+|+++||......+++||+.+++|+..+  .   +|.    .+..+.+++++   |++|++++.   
T Consensus       492 ~h~~~~~~---~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~--~~g~~p~----~r~~~~a~v~~~~~~~iyv~GG~~~~  562 (695)
T 2zwa_A          492 RHSACSLP---DGNVLILGGVTEGPAMLLYNVTEEIFKDVT--PKDEFFQ----NSLVSAGLEFDPVSKQGIILGGGFMD  562 (695)
T ss_dssp             SCEEEECT---TSCEEEECCBCSSCSEEEEETTTTEEEECC--CSSGGGG----SCCBSCEEEEETTTTEEEEECCBCTT
T ss_pred             cceEEEEc---CCEEEEECCCCCCCCEEEEECCCCceEEcc--CCCCCCC----cccceeEEEEeCCCCEEEEECCcCCC
Confidence            66655432   227888888654348999999999999887  3   332    23455556767   899999874   


Q ss_pred             ----CcEEEEEEcCCCe------eecCCCCCcccccCCCCcccccceeecccCC-CeEEEEEEeecCC---ccceEEEEE
Q 018005          216 ----PFSIVRFDLENGI------WETPNDANDHMTMMLPHELTFFRLVNDGEES-NKLYLIGGVGRNG---ISTTMKLWE  281 (362)
Q Consensus       216 ----~~~i~~~D~~~~~------w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~-G~L~vv~~~~~~~---~~~~i~vw~  281 (362)
                          ...+.+||+.+++      |+.+...       .+..+..+.+++   .+ |+||++||.....   ....+.+|.
T Consensus       563 ~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-------p~~~R~~~~~~~---~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          563 QTTVSDKAIIFKYDAENATEPITVIKKLQH-------PLFQRYGSQIKY---ITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             SSCBCCEEEEEEECTTCSSCCEEEEEEEEC-------GGGCCBSCEEEE---EETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             CCeeeCcEEEEEccCCccccceEEEEcCCC-------CCCCcccceEEE---eCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence                2468999999999      7765311       123344455553   67 9999999965332   245566664


Q ss_pred             ECCCCCEEEEecccHH
Q 018005          282 LGCGGNWIEVERVPEM  297 (362)
Q Consensus       282 l~~~~~W~~v~~~p~~  297 (362)
                      + ..+.|+.+ .+|..
T Consensus       633 ~-~t~~W~~~-~~p~~  646 (695)
T 2zwa_A          633 P-LSETLTSI-PISRR  646 (695)
T ss_dssp             T-TTTEEEEC-CCCHH
T ss_pred             C-CCCeEEEe-ecccc
Confidence            4 23459943 55543

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.52  E-value=1.6e-12  Score=127.96  Aligned_cols=205  Identities=12%  Similarity=0.065  Sum_probs=132.5

Q ss_pred             eeeeeeCCCCCeEeec-CCcCCCCCCceEEEecCCceEEEecC-CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCC
Q 018005           77 QYPLYDSTHGTWRRLS-LPYSLLLPSAATLLSSSKGLLCFSLP-SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTP  154 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~-~~~~~~~~~~~~~~~s~~Gll~~~~~-~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~  154 (362)
                      .+..||+..++|..++ ++.. ............+|.|++.++ ....+.+|||.|++|..+++++.+|..+..+...+ 
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~-~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d-  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTK-HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD-  297 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECS-CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT-
T ss_pred             EEEEEeCCCCcEEeCcccCCC-CCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC-
Confidence            4678999999998875 2211 111222234457887777766 34589999999999999999888776655544322 


Q ss_pred             CceEEEEEeee-c---CCCeEEEEeCCCCcccccccC---CCCcccc-----c---------------------------
Q 018005          155 SGYKIFMLFAK-S---FPNYAFVYDSTDQSWSKFDID---GFPSMIL-----S---------------------------  195 (362)
Q Consensus       155 ~~ykv~~~~~~-~---~~~~~~vy~s~~~~W~~~~~~---~~p~~~~-----~---------------------------  195 (362)
                        -+|+++||. .   ....+++||+.+++|+..+..   .++....     .                           
T Consensus       298 --g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd  375 (656)
T 1k3i_A          298 --GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY  375 (656)
T ss_dssp             --SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred             --CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeee
Confidence              278888883 2   134899999999999886310   1211000     0                           


Q ss_pred             ---------------------cCCCcccEE---ECCEEEEEecCC--------c---EEEEEEcCCCeeecCC-CCCccc
Q 018005          196 ---------------------QSSHQEGVF---YKGSLYFTTPEP--------F---SIVRFDLENGIWETPN-DANDHM  239 (362)
Q Consensus       196 ---------------------~~~~~~~v~---~~G~ly~~~~~~--------~---~i~~~D~~~~~w~~~~-~p~~~~  239 (362)
                                           ......++.   .+|++|++++..        .   .+.+||+.+++|..+. .+    
T Consensus       376 ~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~----  451 (656)
T 1k3i_A          376 TSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNG----  451 (656)
T ss_dssp             CSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTC----
T ss_pred             cCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCC----
Confidence                                 000112222   389999998731        1   6889999999998763 23    


Q ss_pred             ccCCCCcccccceeecccCCCeEEEEEEeecC------CccceEEEEEECCCCCEEEEeccc
Q 018005          240 TMMLPHELTFFRLVNDGEESNKLYLIGGVGRN------GISTTMKLWELGCGGNWIEVERVP  295 (362)
Q Consensus       240 ~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~------~~~~~i~vw~l~~~~~W~~v~~~p  295 (362)
                         ||..+..+..++.  .+|+||+++|....      .....+++|+.+ .+.|+.+..++
T Consensus       452 ---mp~~R~~~~~~~l--~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~-t~~W~~~~~~~  507 (656)
T 1k3i_A          452 ---LYFARTFHTSVVL--PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE-QDTFYKQNPNS  507 (656)
T ss_dssp             ---CSSCCBSCEEEEC--TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG-GTEEEECCCCS
T ss_pred             ---CCCCcccCCeEEC--CCCCEEEECCcccCcCcCCCCcccceEEEcCC-CCceeecCCCC
Confidence               6776665554431  39999999985421      123567788652 34599988775

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.13  E-value=2.6e-11  Score=77.42  Aligned_cols=44  Identities=32%  Similarity=0.511  Sum_probs=38.4

Q ss_pred             ChhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccc
Q 018005            9 DPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF   52 (362)
Q Consensus         9 ~~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F   52 (362)
                      ++..|..||+|++.+||++||.+++.++++|||+|+.++.++.|
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l   48 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence            45678999999999999999999999999999999999998765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.99  E-value=3.7e-07  Score=85.36  Aligned_cols=41  Identities=10%  Similarity=0.277  Sum_probs=37.9

Q ss_pred             ChhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccC
Q 018005            9 DPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFS   49 (362)
Q Consensus         9 ~~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~   49 (362)
                      ....++.||+|++.+||++|++++|++++.|||.|+.++.+
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            34568899999999999999999999999999999999987

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.93  E-value=1.7e-10  Score=100.05  Aligned_cols=52  Identities=25%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             CChhhhcCCCHHHHHHHHccCChhhhh-hhhccchhhhhhccCcccccccccc
Q 018005            8 MDPAIWSRLPEDLLDHVLSFLPPKMLL-KLRSTCKHFNSLLFSPSFLSKTKCS   59 (362)
Q Consensus         8 ~~~~~~~~LP~dll~~IL~rLp~~~l~-~~r~VcK~W~~~i~~~~F~~~~~~~   59 (362)
                      ++...+..||+||+.+||+|||+++|+ ++++|||+|+++++++.|-+.+..+
T Consensus        46 ~~~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~   98 (297)
T 2e31_A           46 EAVEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ   98 (297)
T ss_dssp             -CCCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHH
T ss_pred             ccccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhc
Confidence            345578899999999999999999999 9999999999999999998877654

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.90  E-value=1.5e-07  Score=87.72  Aligned_cols=239  Identities=17%  Similarity=0.124  Sum_probs=116.1

Q ss_pred             hhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCcccccccccc-CCCcceEEEEecCCCC----cee-eeee-
Q 018005           10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCS-SSAFSCFILLSHPQCY----DQY-PLYD-   82 (362)
Q Consensus        10 ~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~~~~~~~-~~~~~~~l~~~~~~~~----~~~-~~~d-   82 (362)
                      ...++.||+|++.+||++|++++|.++++|||+|+.++.++.+-+..... .-..+...-.......    ..+ ..|- 
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~   95 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIR   95 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhh
Confidence            34678999999999999999999999999999999999876543322211 0000000000000000    000 0000 


Q ss_pred             --CCCCCeEeecC--CcCCCC--CCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCc
Q 018005           83 --STHGTWRRLSL--PYSLLL--PSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG  156 (362)
Q Consensus        83 --~~~~~w~~~~~--~~~~~~--~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~  156 (362)
                        .....|..-..  ...+..  ......+...+.+++... .++.+.+||..+++....-. ........+.+..    
T Consensus        96 ~~~~~~~w~~~~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~-~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~----  169 (445)
T 2ovr_B           96 QHRIDTNWRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGS-DDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRD----  169 (445)
T ss_dssp             HHHHHHHHHHSCCCCCEEEECSTTSCEEEEEEETTEEEEEE-TTSCEEEEETTTCCEEEECC-CCSSCEEEEEEET----
T ss_pred             hhhhhhcccCCCcceeEEecccCCCcEEEEEEcCCEEEEEE-CCCcEEEEECCCCcEEEEEc-CCCCCEEEEEecC----
Confidence              00001111110  000111  111223333444444333 46889999999887543211 1111222333331    


Q ss_pred             eEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCC
Q 018005          157 YKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDAN  236 (362)
Q Consensus       157 ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~  236 (362)
                       ..++.++  ....+.+||..++.-...-    ..    .......+..++...+.++....+..||+.+.+-...    
T Consensus       170 -~~l~s~~--~dg~i~vwd~~~~~~~~~~----~~----h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~----  234 (445)
T 2ovr_B          170 -NIIISGS--TDRTLKVWNAETGECIHTL----YG----HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHV----  234 (445)
T ss_dssp             -TEEEEEE--TTSCEEEEETTTTEEEEEE----CC----CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEE----
T ss_pred             -CEEEEEe--CCCeEEEEECCcCcEEEEE----CC----CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEE----
Confidence             1333333  3468899998876422111    10    0011223444555555566556899999986543221    


Q ss_pred             cccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005          237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG  283 (362)
Q Consensus       237 ~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~  283 (362)
                            +.........+ .  .+|++++++.     ....+.+|+++
T Consensus       235 ------~~~~~~~v~~~-~--~~~~~l~~~~-----~dg~i~iwd~~  267 (445)
T 2ovr_B          235 ------LMGHVAAVRCV-Q--YDGRRVVSGA-----YDFMVKVWDPE  267 (445)
T ss_dssp             ------EECCSSCEEEE-E--ECSSCEEEEE-----TTSCEEEEEGG
T ss_pred             ------EcCCcccEEEE-E--ECCCEEEEEc-----CCCEEEEEECC
Confidence                  11101111222 2  5677666655     23677888764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.76  E-value=7.7e-08  Score=89.47  Aligned_cols=44  Identities=20%  Similarity=0.385  Sum_probs=39.2

Q ss_pred             CChhhhcCCCHH----HHHHHHccCChhhhhhhhccchhhhhhccCcc
Q 018005            8 MDPAIWSRLPED----LLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPS   51 (362)
Q Consensus         8 ~~~~~~~~LP~d----ll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~   51 (362)
                      +....++.||+|    |+.+||++|++++|.++++|||+|+.++.++.
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~   53 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGM   53 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTT
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChH
Confidence            344577899999    99999999999999999999999999998654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.94  E-value=2.1e-06  Score=73.64  Aligned_cols=43  Identities=35%  Similarity=0.476  Sum_probs=39.3

Q ss_pred             hhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccc
Q 018005           10 PAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF   52 (362)
Q Consensus        10 ~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F   52 (362)
                      |..+..||+|++.+||+.|++++|+++.+|||+||.+.+++..
T Consensus         2 ~~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~L   44 (312)
T 3l2o_B            2 ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPIL   44 (312)
T ss_dssp             CCHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHH
T ss_pred             cchhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchH
Confidence            3457899999999999999999999999999999999998754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.70  E-value=1.4e-05  Score=71.39  Aligned_cols=44  Identities=32%  Similarity=0.511  Sum_probs=38.7

Q ss_pred             ChhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccc
Q 018005            9 DPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF   52 (362)
Q Consensus         9 ~~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F   52 (362)
                      +...|+.||+|++.+||++|+.+++.+++.|||+|+.+..++..
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~   48 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTT
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchh
Confidence            45678999999999999999999999999999999999876653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.42  E-value=4.6e-05  Score=73.57  Aligned_cols=39  Identities=31%  Similarity=0.542  Sum_probs=29.4

Q ss_pred             CChhhhcCCCHHHHHHHHccCC-hhhhhhhhccchhhhhh
Q 018005            8 MDPAIWSRLPEDLLDHVLSFLP-PKMLLKLRSTCKHFNSL   46 (362)
Q Consensus         8 ~~~~~~~~LP~dll~~IL~rLp-~~~l~~~r~VcK~W~~~   46 (362)
                      |+...|+.||+|++.+||++|| .+++.+++.|||+|+.+
T Consensus         1 ~~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            1 MQKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ---------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             CcccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4567899999999999999999 99999999999999988

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.55  E-value=0.36  Score=42.33  Aligned_cols=183  Identities=8%  Similarity=-0.006  Sum_probs=96.4

Q ss_pred             CCeEEEEeCCcCceeec-cC--CCCC--CccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccc-ccccCCCCccc
Q 018005          120 SSSFLVCNLVTLSSRTI-DF--PTYP--FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMI  193 (362)
Q Consensus       120 ~~~~~v~NP~t~~w~~l-P~--~~~~--~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~  193 (362)
                      ...+.++||.|++...- ..  -..+  .....+.+...    +++++..  ....+.++|..+++-. ..+  ...   
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~----~lyv~~~--~~~~v~viD~~t~~~~~~i~--~~~---   84 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDG----IGWIVVN--NSHVIFAIDINTFKEVGRIT--GFT---   84 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETT----EEEEEEG--GGTEEEEEETTTCCEEEEEE--CCS---
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECC----EEEEEEc--CCCEEEEEECcccEEEEEcC--CCC---
Confidence            46899999999987541 10  0011  11122333322    5665543  3458999999887542 222  111   


Q ss_pred             cccCCCcccEE-ECCEEEEEecCCcEEEEEEcCCCeeec-CCCCCcccccCCCCc-ccccceeecccCCCeEEEEEEeec
Q 018005          194 LSQSSHQEGVF-YKGSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHE-LTFFRLVNDGEESNKLYLIGGVGR  270 (362)
Q Consensus       194 ~~~~~~~~~v~-~~G~ly~~~~~~~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~-~~~~~lv~~~~~~G~L~vv~~~~~  270 (362)
                          .....++ -+|++|+.......+.++|+++.+... +....      .... ..-..+..   .+|+||+...   
T Consensus        85 ----~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~------~~~~~~~p~~i~~---~~~~lyv~~~---  148 (328)
T 3dsm_A           85 ----SPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPD------MDMESGSTEQMVQ---YGKYVYVNCW---  148 (328)
T ss_dssp             ----SEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTT------CCTTTCBCCCEEE---ETTEEEEEEC---
T ss_pred             ----CCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCC------ccccCCCcceEEE---ECCEEEEEcC---
Confidence                1112233 579999887555689999999876542 22110      0000 01223442   5888998853   


Q ss_pred             CCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC----------CeEEEEECCCC
Q 018005          271 NGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW----------PEILYYNVARR  340 (362)
Q Consensus       271 ~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~v~~yd~~~~  340 (362)
                       +....+.+++++ .++..  .+++.           .....-..+..++.+|+.....          ..+.++|++++
T Consensus       149 -~~~~~v~viD~~-t~~~~--~~i~~-----------g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~  213 (328)
T 3dsm_A          149 -SYQNRILKIDTE-TDKVV--DELTI-----------GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF  213 (328)
T ss_dssp             -TTCCEEEEEETT-TTEEE--EEEEC-----------SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT
T ss_pred             -CCCCEEEEEECC-CCeEE--EEEEc-----------CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC
Confidence             123567777553 23322  22210           0001111233456677765433          57999999998


Q ss_pred             ceEE
Q 018005          341 TWHW  344 (362)
Q Consensus       341 ~w~~  344 (362)
                      +...
T Consensus       214 ~v~~  217 (328)
T 3dsm_A          214 TVEK  217 (328)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            7664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.34  E-value=0.38  Score=40.32  Aligned_cols=151  Identities=12%  Similarity=0.032  Sum_probs=88.0

Q ss_pred             EEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCC-cccEEECCEEEEEecCCcEEEEEEcCCCeee-cCCCC
Q 018005          158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH-QEGVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDA  235 (362)
Q Consensus       158 kv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~-~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p  235 (362)
                      .++...+......+.++|.++++=...-  .++.     ... ...+..++.+|.++.....+.+||+++.+-. .+.  
T Consensus        32 ~LyestG~~g~S~v~~vD~~tgkv~~~~--~l~~-----~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~--  102 (243)
T 3mbr_X           32 HLYESTGETGRSSVRKVDLETGRILQRA--EVPP-----PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFR--  102 (243)
T ss_dssp             EEEEEECCTTSCEEEEEETTTCCEEEEE--ECCT-----TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE--
T ss_pred             EEEEECCCCCCceEEEEECCCCCEEEEE--eCCC-----CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEe--
Confidence            6776666555679999999988654333  2332     122 2345568899999988889999999886543 322  


Q ss_pred             CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE
Q 018005          236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC  315 (362)
Q Consensus       236 ~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~  315 (362)
                             .+  .....|..   -+++|++..+      ..+  ++.+|..+. ..+.+++...    .+..+...+.+.+
T Consensus       103 -------~~--~~Gwglt~---dg~~L~vSdg------s~~--l~~iDp~t~-~~~~~I~V~~----~g~~~~~lNeLe~  157 (243)
T 3mbr_X          103 -------YP--GEGWALTS---DDSHLYMSDG------TAV--IRKLDPDTL-QQVGSIKVTA----GGRPLDNLNELEW  157 (243)
T ss_dssp             -------CS--SCCCEEEE---CSSCEEEECS------SSE--EEEECTTTC-CEEEEEECEE----TTEECCCEEEEEE
T ss_pred             -------CC--CCceEEee---CCCEEEEECC------CCe--EEEEeCCCC-eEEEEEEEcc----CCcccccceeeEE
Confidence                   22  13345652   4566777754      234  555565432 2222221100    0000011123333


Q ss_pred             EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          316 FWHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                        .++.||+....++.|.+-|+++++-..
T Consensus       158 --~~G~lyanvw~s~~I~vIDp~tG~V~~  184 (243)
T 3mbr_X          158 --VNGELLANVWLTSRIARIDPASGKVVA  184 (243)
T ss_dssp             --ETTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred             --eCCEEEEEECCCCeEEEEECCCCCEEE
Confidence              367899887778899999999986544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.30  E-value=0.0011  Score=63.71  Aligned_cols=34  Identities=15%  Similarity=0.379  Sum_probs=31.8

Q ss_pred             cCCCHHHHHHHHccC-Chhhhhhhhccchhhhhhc
Q 018005           14 SRLPEDLLDHVLSFL-PPKMLLKLRSTCKHFNSLL   47 (362)
Q Consensus        14 ~~LP~dll~~IL~rL-p~~~l~~~r~VcK~W~~~i   47 (362)
                      +.||+|++.+||++| +.+++.+++.|||+|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            579999999999999 8999999999999999874

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=96.22  E-value=0.51  Score=40.57  Aligned_cols=207  Identities=12%  Similarity=0.091  Sum_probs=104.2

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCC
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGF  189 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  189 (362)
                      +|-+++.....+.++.+||.+++...+...   ....+++++..+.   +++..    ...+.+||..+++.+...  ..
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~---~~~~~i~~~~dG~---l~v~~----~~~l~~~d~~~g~~~~~~--~~   91 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMD---APVSSVALRQSGG---YVATI----GTKFCALNWKEQSAVVLA--TV   91 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEEECS---SCEEEEEEBTTSS---EEEEE----TTEEEEEETTTTEEEEEE--EC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEeCC---CceEEEEECCCCC---EEEEE----CCeEEEEECCCCcEEEEE--ec
Confidence            444444444457889999999876554322   1223445544333   33322    257899999998887654  22


Q ss_pred             CccccccCCCcccEEE--CCEEEEEec-----------CCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecc
Q 018005          190 PSMILSQSSHQEGVFY--KGSLYFTTP-----------EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDG  256 (362)
Q Consensus       190 p~~~~~~~~~~~~v~~--~G~ly~~~~-----------~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~  256 (362)
                      +. ..+. .....+.+  +|.+|+.+.           ....+..+|+... ...+....     -.|.     .+... 
T Consensus        92 ~~-~~~~-~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~~~~~~~~-----~~pn-----gi~~s-  157 (297)
T 3g4e_A           92 DN-DKKN-NRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH-VKKYFDQV-----DISN-----GLDWS-  157 (297)
T ss_dssp             CT-TCSS-EEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC-EEEEEEEE-----SBEE-----EEEEC-
T ss_pred             CC-CCCC-CCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC-EEEEeecc-----cccc-----ceEEc-
Confidence            11 0111 11223333  688877542           1235777777532 22211000     0121     23211 


Q ss_pred             cCCCe-EEEEEEeecCCccceEEEEEEC-CCCCEEE---EecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCe
Q 018005          257 EESNK-LYLIGGVGRNGISTTMKLWELG-CGGNWIE---VERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPE  331 (362)
Q Consensus       257 ~~~G~-L~vv~~~~~~~~~~~i~vw~l~-~~~~W~~---v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  331 (362)
                       -+|+ ||++..     ....|.+|.++ .++....   +..++..     .     ....-.++..++.|++.....+.
T Consensus       158 -pdg~~lyv~~~-----~~~~i~~~~~d~~~G~~~~~~~~~~~~~~-----~-----~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          158 -LDHKIFYYIDS-----LSYSVDAFDYDLQTGQISNRRSVYKLEKE-----E-----QIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             -TTSCEEEEEEG-----GGTEEEEEEECTTTCCEEEEEEEEECCGG-----G-----CEEEEEEEBTTSCEEEEEETTTE
T ss_pred             -CCCCEEEEecC-----CCCcEEEEeccCCCCcccCcEEEEECCCC-----C-----CCCCeeEECCCCCEEEEEcCCCE
Confidence             4565 666654     34678888876 3444321   2223210     0     01111233345678888766778


Q ss_pred             EEEEECCCCceEEcCCCCCCCCCCCcce
Q 018005          332 ILYYNVARRTWHWLPSCPSLPHKWSCGF  359 (362)
Q Consensus       332 v~~yd~~~~~w~~~~~~~~~~~~~~~~~  359 (362)
                      |..||+++++....-..|. ....+|.|
T Consensus       222 v~~~d~~tG~~~~~i~~p~-~~~t~~~f  248 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKLPV-DKTTSCCF  248 (297)
T ss_dssp             EEEECTTTCCEEEEEECSS-SBEEEEEE
T ss_pred             EEEEcCCCceEEEEEECCC-CCceEEEE
Confidence            9999999876544322331 23344555

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.59  Score=41.02  Aligned_cols=190  Identities=10%  Similarity=0.139  Sum_probs=94.8

Q ss_pred             CCCeEEEEeCCcCceeeccCCC-CCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccC
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~-~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~  197 (362)
                      .++.+.+||..+++...+.... .......+.+...... ..++.++  ....+.+||..++.|....  ....    ..
T Consensus        31 ~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~--~dg~v~iwd~~~~~~~~~~--~~~~----~~  101 (379)
T 3jrp_A           31 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCS--YDGKVLIWKEENGRWSQIA--VHAV----HS  101 (379)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEE--TTSCEEEEEEETTEEEEEE--EECC----CS
T ss_pred             CCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEec--cCCEEEEEEcCCCceeEee--eecC----CC
Confidence            3567888888755544433222 1122233444322111 2333333  2357899999998876554  2211    01


Q ss_pred             CCcccEEE--C--CEEEEEecCCcEEEEEEcCCCeeec-CCCCCcccccCCCCcccccceeec---------ccCCCeEE
Q 018005          198 SHQEGVFY--K--GSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVND---------GEESNKLY  263 (362)
Q Consensus       198 ~~~~~v~~--~--G~ly~~~~~~~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~~~~~~lv~~---------~~~~G~L~  263 (362)
                      .....+.+  +  |.+.+.+.....+..||+.+..-.. .....      .............         +.-+|.++
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l  175 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA------HAIGVNSASWAPATIEEDGEHNGTKESRKF  175 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC------CTTCEEEEEECCCC----------CTTCEE
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC------CCCceEEEEEcCccccccccccCCCCCCEE
Confidence            11223333  2  5555566655689999987652211 10000      1111111111100         00157777


Q ss_pred             EEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEE--eeC---CEEEEEeecCCeEEEEEC
Q 018005          264 LIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQ---GMICVCCYTWPEILYYNV  337 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~v~~yd~  337 (362)
                      +++..     ...+.+|++..... +..+..+..            +...+.++  ..+   +.+++.....+.+.+||+
T Consensus       176 ~~~~~-----dg~i~i~d~~~~~~~~~~~~~~~~------------h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~  238 (379)
T 3jrp_A          176 VTGGA-----DNLVKIWKYNSDAQTYVLESTLEG------------HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  238 (379)
T ss_dssp             EEEET-----TSCEEEEEEETTTTEEEEEEEECC------------CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred             EEEeC-----CCeEEEEEecCCCcceeeEEEEec------------ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence            77662     36899999965544 776665521            11223222  223   455555556678999999


Q ss_pred             CCC
Q 018005          338 ARR  340 (362)
Q Consensus       338 ~~~  340 (362)
                      ++.
T Consensus       239 ~~~  241 (379)
T 3jrp_A          239 DNE  241 (379)
T ss_dssp             SST
T ss_pred             CCC
Confidence            886

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.05  E-value=0.6  Score=41.49  Aligned_cols=187  Identities=11%  Similarity=-0.002  Sum_probs=95.6

Q ss_pred             eEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCc
Q 018005          112 LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPS  191 (362)
Q Consensus       112 ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~  191 (362)
                      .+++.+..++.+.+||..+++....-...  ....++++.+.+  -.+++.++  ....+.+||..+++-...-  ... 
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg--~~l~~~~~--~d~~i~v~d~~~~~~~~~~--~~~-   73 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDG--TKVYVANA--HSNDVSIIDTATNNVIATV--PAG-   73 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTS--SEEEEEEG--GGTEEEEEETTTTEEEEEE--ECS-
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecC--CCcceEEECCCC--CEEEEECC--CCCeEEEEECCCCeEEEEE--ECC-
Confidence            45555555678999999998764432211  112334444332  24444432  2358899999876543221  111 


Q ss_pred             cccccCCCcccEEE--CCE-EEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEE-EEEE
Q 018005          192 MILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY-LIGG  267 (362)
Q Consensus       192 ~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~-vv~~  267 (362)
                            .....+.+  +|. +|+.+.....|.+||+.+.+..... +       .....  ..+...  -+|+.. +.+.
T Consensus        74 ------~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~-~-------~~~~~--~~~~~s--~dg~~l~~~~~  135 (391)
T 1l0q_A           74 ------SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV-K-------TGKSP--LGLALS--PDGKKLYVTNN  135 (391)
T ss_dssp             ------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-E-------CSSSE--EEEEEC--TTSSEEEEEET
T ss_pred             ------CCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEE-e-------CCCCc--ceEEEC--CCCCEEEEEeC
Confidence                  11122333  354 5555555568999999987654321 1       11111  122211  466644 4442


Q ss_pred             eecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEe-eCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          268 VGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       268 ~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                           ....+.+|++. .++........             ......++. .++.+++.....+.+.+||+++++...
T Consensus       136 -----~~~~v~~~d~~-~~~~~~~~~~~-------------~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          136 -----GDKTVSVINTV-TKAVINTVSVG-------------RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (391)
T ss_dssp             -----TTTEEEEEETT-TTEEEEEEECC-------------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -----CCCEEEEEECC-CCcEEEEEecC-------------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence                 34688999774 33322211110             011111222 345677766566789999998876544

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=96.02  E-value=0.66  Score=40.10  Aligned_cols=191  Identities=10%  Similarity=0.019  Sum_probs=98.9

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCC
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGF  189 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  189 (362)
                      .+.+++.....+.+.++|+.|++....-..+.. .. .+++.+.+.  .+++...  ....+.+||..++.-....   .
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~-~~~~s~dg~--~l~~~~~--~~~~i~~~d~~~~~~~~~~---~   79 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYD-FV-DTAITSDCS--NVVVTSD--FCQTLVQIETQLEPPKVVA---I   79 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCC-EE-EEEECSSSC--EEEEEES--TTCEEEEEECSSSSCEEEE---E
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccCC-cc-eEEEcCCCC--EEEEEeC--CCCeEEEEECCCCceeEEe---c
Confidence            344555544457899999999987544332211 12 445544332  3444333  2348899999887641111   1


Q ss_pred             CccccccCCCcccEEE--CCE-EEEEecCC-c--EEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCe-E
Q 018005          190 PSMILSQSSHQEGVFY--KGS-LYFTTPEP-F--SIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK-L  262 (362)
Q Consensus       190 p~~~~~~~~~~~~v~~--~G~-ly~~~~~~-~--~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L  262 (362)
                      ..    ......++.+  +|. +| ..... .  .+.++|+.+.+.... .+       .....  ..+...  -+|+ |
T Consensus        80 ~~----~~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~-~~-------~~~~~--~~~~~s--pdg~~l  142 (331)
T 3u4y_A           80 QE----GQSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFIST-IP-------IPYDA--VGIAIS--PNGNGL  142 (331)
T ss_dssp             EE----CSSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEE-EE-------CCTTE--EEEEEC--TTSSCE
T ss_pred             cc----CCCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEE-EE-------CCCCc--cceEEC--CCCCEE
Confidence            11    0011221333  454 55 44333 3  799999988765432 11       11111  223222  5676 6


Q ss_pred             EEEEEeecCCccce-EEEEEECCCCCEEEE--ecccHHHHHHhhhccccCCccEEEEe-eCCEEEEEeecCCeEEEEECC
Q 018005          263 YLIGGVGRNGISTT-MKLWELGCGGNWIEV--ERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVA  338 (362)
Q Consensus       263 ~vv~~~~~~~~~~~-i~vw~l~~~~~W~~v--~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~  338 (362)
                      ++...     .... +.+|.++..+.-...  ..++.           .....-..+. .+..+|+.....+.+.+||++
T Consensus       143 ~~~~~-----~~~~~i~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          143 ILIDR-----SSANTVRRFKIDADGVLFDTGQEFISG-----------GTRPFNITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             EEEEE-----TTTTEEEEEEECTTCCEEEEEEEEECS-----------SSSEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEec-----CCCceEEEEEECCCCcEeecCCccccC-----------CCCccceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            66654     2245 999999866552222  11110           1111112222 344688877667789999999


Q ss_pred             CCce
Q 018005          339 RRTW  342 (362)
Q Consensus       339 ~~~w  342 (362)
                      +++.
T Consensus       207 ~~~~  210 (331)
T 3u4y_A          207 NPEN  210 (331)
T ss_dssp             STTS
T ss_pred             CCcc
Confidence            8775

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=96.00  E-value=0.78  Score=40.72  Aligned_cols=217  Identities=9%  Similarity=0.019  Sum_probs=108.3

Q ss_pred             ceeeeeeCCCCCeEee-cCCcCCCCCCceEEEecCCc-eEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeC
Q 018005           76 DQYPLYDSTHGTWRRL-SLPYSLLLPSAATLLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVST  153 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~-~~~~~~~~~~~~~~~~s~~G-ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~  153 (362)
                      ..+.++|...++.... ...     .....+..+.+| .+++.+..++.+.+||+.+++....-....  ....+++.+.
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spd   84 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVG-----SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPD   84 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECS-----SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTT
T ss_pred             CEEEEEECCCCeEEEEeecC-----CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCC
Confidence            3566778776654332 211     111223334455 565555445789999999988654332221  2234444433


Q ss_pred             CCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCE-EEEEecCCcEEEEEEcCCCeee
Q 018005          154 PSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGIWE  230 (362)
Q Consensus       154 ~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D~~~~~w~  230 (362)
                      +.  .+++.+.  ....+.+||..++.-...-  ...       .....+.+  +|. +|+.+.....+..+|+.+.+..
T Consensus        85 g~--~l~~~~~--~~~~v~v~d~~~~~~~~~~--~~~-------~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  151 (391)
T 1l0q_A           85 GK--QVYVTNM--ASSTLSVIDTTSNTVAGTV--KTG-------KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVI  151 (391)
T ss_dssp             SS--EEEEEET--TTTEEEEEETTTTEEEEEE--ECS-------SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred             CC--EEEEEEC--CCCEEEEEECCCCeEEEEE--eCC-------CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence            22  3443332  3468999999887543221  100       11123333  454 6666665668999999887654


Q ss_pred             cCCCCCcccccCCCCcccccceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccC
Q 018005          231 TPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHN  309 (362)
Q Consensus       231 ~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~  309 (362)
                      ... +       .....  ..+...  -+|+ |++.+.     ....+.+|++. .+.  .+..++.           ..
T Consensus       152 ~~~-~-------~~~~~--~~~~~~--~dg~~l~~~~~-----~~~~v~~~d~~-~~~--~~~~~~~-----------~~  200 (391)
T 1l0q_A          152 NTV-S-------VGRSP--KGIAVT--PDGTKVYVANF-----DSMSISVIDTV-TNS--VIDTVKV-----------EA  200 (391)
T ss_dssp             EEE-E-------CCSSE--EEEEEC--TTSSEEEEEET-----TTTEEEEEETT-TTE--EEEEEEC-----------SS
T ss_pred             EEE-e-------cCCCc--ceEEEC--CCCCEEEEEeC-----CCCEEEEEECC-CCe--EEEEEec-----------CC
Confidence            321 1       11111  122211  4565 444433     23678999774 222  2222210           00


Q ss_pred             CccEEEEe-eCCEEEEEee--cCCeEEEEECCCCceE
Q 018005          310 YDHVYCFW-HQGMICVCCY--TWPEILYYNVARRTWH  343 (362)
Q Consensus       310 ~~~~~~~~-~~~~i~~~~~--~~~~v~~yd~~~~~w~  343 (362)
                      .....++. .+..+++...  ..+.+.+||+++++-.
T Consensus       201 ~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~  237 (391)
T 1l0q_A          201 APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT  237 (391)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE
T ss_pred             CccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE
Confidence            00111222 3456666654  4568999999877543

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.94  E-value=0.48  Score=40.12  Aligned_cols=151  Identities=10%  Similarity=-0.083  Sum_probs=86.5

Q ss_pred             EEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcc-cEEECCEEEEEecCCcEEEEEEcCCCeee-cCCCC
Q 018005          158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQE-GVFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDA  235 (362)
Q Consensus       158 kv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~-~v~~~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p  235 (362)
                      .++...+......+.++|.++++=...-  .++.     ..... .+..++.+|.++.....+.+||+++.+-. .+.  
T Consensus        54 ~LyestG~~g~S~v~~vD~~Tgkv~~~~--~l~~-----~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~--  124 (262)
T 3nol_A           54 YFYESTGLNGRSSIRKVDIESGKTLQQI--ELGK-----RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFN--  124 (262)
T ss_dssp             EEEEEEEETTEEEEEEECTTTCCEEEEE--ECCT-----TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEE--
T ss_pred             EEEEECCCCCCceEEEEECCCCcEEEEE--ecCC-----ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEE--
Confidence            6777666655568999999988643322  2222     12222 34567899999988789999999875443 332  


Q ss_pred             CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE
Q 018005          236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC  315 (362)
Q Consensus       236 ~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~  315 (362)
                             .+.  ....+..   -++.|++..+      ..  .++.+|..+. +.+.+++...    .+..+...+.+.+
T Consensus       125 -------~~~--eG~glt~---dg~~L~~SdG------s~--~i~~iDp~T~-~v~~~I~V~~----~g~~~~~lNELe~  179 (262)
T 3nol_A          125 -------YDG--EGWGLTH---NDQYLIMSDG------TP--VLRFLDPESL-TPVRTITVTA----HGEELPELNELEW  179 (262)
T ss_dssp             -------CSS--CCCCEEE---CSSCEEECCS------SS--EEEEECTTTC-SEEEEEECEE----TTEECCCEEEEEE
T ss_pred             -------CCC--CceEEec---CCCEEEEECC------CC--eEEEEcCCCC-eEEEEEEecc----CCccccccceeEE
Confidence                   221  3345552   3455666643      13  3566665532 1222221100    0000011122333


Q ss_pred             EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          316 FWHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                        .++.||+.....+.|.+-|+++++-..
T Consensus       180 --~~G~lyan~w~~~~I~vIDp~tG~V~~  206 (262)
T 3nol_A          180 --VDGEIFANVWQTNKIVRIDPETGKVTG  206 (262)
T ss_dssp             --ETTEEEEEETTSSEEEEECTTTCBEEE
T ss_pred             --ECCEEEEEEccCCeEEEEECCCCcEEE
Confidence              367899888778899999999986654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.87  E-value=0.82  Score=39.94  Aligned_cols=245  Identities=11%  Similarity=0.061  Sum_probs=114.9

Q ss_pred             eeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecC--CCCeEEEEeCCcCceeeccCCC-CCCccceEEEEeCC
Q 018005           78 YPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP--SSSSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTP  154 (362)
Q Consensus        78 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~--~~~~~~v~NP~t~~w~~lP~~~-~~~~~~~~~~~~~~  154 (362)
                      ++.+|+..++...+......  .....+..+-+|-+++...  ..+.+.+|+..+++...+.... .......+++.+.+
T Consensus        20 v~~~d~~tg~~~~~~~~~~~--~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg   97 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAAT--QNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEAR   97 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEEC--SCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTT
T ss_pred             EEEEcCCCCeEEEeeeeecc--CCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCC
Confidence            44567766665544311111  1112233344554444332  2468999999888765554311 11122345555443


Q ss_pred             CceEEEEEeeecCCCeEEEEeCC-CCcccccccCCCCc---ccc--ccCCCcccEEE--CCEEEEEecCCcEEEEEEcC-
Q 018005          155 SGYKIFMLFAKSFPNYAFVYDST-DQSWSKFDIDGFPS---MIL--SQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLE-  225 (362)
Q Consensus       155 ~~ykv~~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~p~---~~~--~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~-  225 (362)
                      .  .+++...  ....+.+|+.. ++.-+...  ..+.   .+.  ........+.+  +|++|+.......+.+||+. 
T Consensus        98 ~--~l~~~~~--~~~~v~v~~~~~~g~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~  171 (347)
T 3hfq_A           98 Q--LVYSANY--HKGTAEVMKIAADGALTLTD--TVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSD  171 (347)
T ss_dssp             T--EEEEEET--TTTEEEEEEECTTSCEEEEE--EEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECT
T ss_pred             C--EEEEEeC--CCCEEEEEEeCCCCCeeecc--eeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECC
Confidence            2  3444332  33578888874 34433322  1110   000  00001122344  68877766655689999998 


Q ss_pred             CCeeecCCCCCcccccCCCCcccccceeecccCCCe-EEEEEEeecCCccceEEEEEECCC-CCEEEEecccHHHHHHhh
Q 018005          226 NGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCG-GNWIEVERVPEMMCRKFM  303 (362)
Q Consensus       226 ~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v~~~p~~~~~~~~  303 (362)
                      +++...+..-.      .+.+..-..+...  -+|+ |++...     ....+.+|.++.. +.++.+..+..... .+.
T Consensus       172 ~g~~~~~~~~~------~~~g~~p~~~~~s--pdg~~l~v~~~-----~~~~v~v~~~~~~~g~~~~~~~~~~~~~-~~~  237 (347)
T 3hfq_A          172 AGQLSEQSVLT------MEAGFGPRHLVFS--PDGQYAFLAGE-----LSSQIASLKYDTQTGAFTQLGIVKTIPA-DYT  237 (347)
T ss_dssp             TSCEEEEEEEE------CCTTCCEEEEEEC--TTSSEEEEEET-----TTTEEEEEEEETTTTEEEEEEEEESSCT-TCC
T ss_pred             CCcEEEeeeEE------cCCCCCCceEEEC--CCCCEEEEEeC-----CCCEEEEEEecCCCCceEEeeeeeecCC-CCC
Confidence            45444321000      1111111123222  5787 555543     3478899999753 44655444321000 000


Q ss_pred             hccccCCccEEEEe-eCCEEEEEeecCCeEEEEECCC-CceEEcCC
Q 018005          304 SVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVAR-RTWHWLPS  347 (362)
Q Consensus       304 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~-~~w~~~~~  347 (362)
                      .   .....-.++. ++..+|+.....+.+.+||++. ++++.+..
T Consensus       238 ~---~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~  280 (347)
T 3hfq_A          238 A---HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ  280 (347)
T ss_dssp             S---CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE
T ss_pred             C---CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE
Confidence            0   0001112233 3456888776677899999873 35555433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=95.43  E-value=1.2  Score=39.87  Aligned_cols=135  Identities=10%  Similarity=0.048  Sum_probs=73.4

Q ss_pred             CCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCC
Q 018005          120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH  199 (362)
Q Consensus       120 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~  199 (362)
                      ++.+.+||..+++...+-..........+++.+.+   +.+++++  ....+.+||..++.-...-    ..    ....
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~~~~--~dg~i~iwd~~~~~~~~~~----~~----~~~~  178 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDG---SFLSVGL--GNGLVDIYDVESQTKLRTM----AG----HQAR  178 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTS---SEEEEEE--TTSCEEEEETTTCCEEEEE----CC----CSSC
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCC---CEEEEEC--CCCeEEEEECcCCeEEEEe----cC----CCCc
Confidence            57899999999997665544323333344554432   2333333  2357899998776432211    10    0112


Q ss_pred             cccEEECCEEEEEecCCcEEEEEEcCCCe--eecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005          200 QEGVFYKGSLYFTTPEPFSIVRFDLENGI--WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM  277 (362)
Q Consensus       200 ~~~v~~~G~ly~~~~~~~~i~~~D~~~~~--w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i  277 (362)
                      ...+..+|...+.++....+..+|+....  -..+. .       ......  .+...  -+|+++++++     ....+
T Consensus       179 v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~-------~~~~v~--~~~~~--~~~~~l~s~~-----~d~~v  241 (401)
T 4aez_A          179 VGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-G-------HSSEVC--GLAWR--SDGLQLASGG-----NDNVV  241 (401)
T ss_dssp             EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE-C-------CSSCEE--EEEEC--TTSSEEEEEE-----TTSCE
T ss_pred             eEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEc-C-------CCCCee--EEEEc--CCCCEEEEEe-----CCCeE
Confidence            23444567666666666689999997432  11111 1       111111  22211  4777777766     23689


Q ss_pred             EEEEECC
Q 018005          278 KLWELGC  284 (362)
Q Consensus       278 ~vw~l~~  284 (362)
                      .+|++..
T Consensus       242 ~iwd~~~  248 (401)
T 4aez_A          242 QIWDARS  248 (401)
T ss_dssp             EEEETTC
T ss_pred             EEccCCC
Confidence            9998853

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=95.38  E-value=1.3  Score=38.71  Aligned_cols=237  Identities=9%  Similarity=0.116  Sum_probs=114.3

Q ss_pred             ceeeeeeCCCCCeEeecC-CcCCCCCCceEEEecCCc-eEEEecCCCCeEEEEeCC-cCceeeccCC---CC---C----
Q 018005           76 DQYPLYDSTHGTWRRLSL-PYSLLLPSAATLLSSSKG-LLCFSLPSSSSFLVCNLV-TLSSRTIDFP---TY---P----  142 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~-~~~~~~~~~~~~~~s~~G-ll~~~~~~~~~~~v~NP~-t~~w~~lP~~---~~---~----  142 (362)
                      ..+..||...+....+.. ...  ......+..+-+| .|++.....+.+.+|+.. +++...+...   ..   .    
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~--~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~  140 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAP--GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDG  140 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE--SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSS
T ss_pred             ceEEEEEecCCcEEEeeeeecC--CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccC
Confidence            346667775555444321 100  1111222334444 566655445778888874 4443322211   10   0    


Q ss_pred             CccceEEEEeCCCceEEEEEeeecCCCeEEEEeCC-CCcccccccCCCCccccccCCCcccEEE--CCE-EEEEecCCcE
Q 018005          143 FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDST-DQSWSKFDIDGFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFS  218 (362)
Q Consensus       143 ~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~-~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~-ly~~~~~~~~  218 (362)
                      .....+++.+.+.   +++...  ....+.+|+.. ++......  ...   .........+.+  +|+ +|+.......
T Consensus       141 ~~~~~~~~spdg~---l~v~~~--~~~~v~~~~~~~~g~~~~~~--~~~---~~~g~~p~~~~~spdg~~l~v~~~~~~~  210 (347)
T 3hfq_A          141 SHIHYTDLTPDNR---LAVIDL--GSDKVYVYNVSDAGQLSEQS--VLT---MEAGFGPRHLVFSPDGQYAFLAGELSSQ  210 (347)
T ss_dssp             CCEEEEEECTTSC---EEEEET--TTTEEEEEEECTTSCEEEEE--EEE---CCTTCCEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCceEEEECCCCc---EEEEeC--CCCEEEEEEECCCCcEEEee--eEE---cCCCCCCceEEECCCCCEEEEEeCCCCE
Confidence            0122345544433   444332  34578899987 55544322  100   000011122333  576 7776655556


Q ss_pred             EEEEEcC--CCeeecCCCCCcccccCCCCc----ccccceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCCEEEE
Q 018005          219 IVRFDLE--NGIWETPNDANDHMTMMLPHE----LTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEV  291 (362)
Q Consensus       219 i~~~D~~--~~~w~~~~~p~~~~~~~~p~~----~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v  291 (362)
                      +.+||..  +.++..+..-.     ..|..    .....+...  -+|+ ||+...     ....+.+|.++..+..+.+
T Consensus       211 v~v~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~~i~~s--pdG~~l~v~~~-----~~~~v~v~~~~~~g~~~~~  278 (347)
T 3hfq_A          211 IASLKYDTQTGAFTQLGIVK-----TIPADYTAHNGAAAIRLS--HDGHFLYVSNR-----GYNTLAVFAVTADGHLTLI  278 (347)
T ss_dssp             EEEEEEETTTTEEEEEEEEE-----SSCTTCCSCCEEEEEEEC--TTSCEEEEEEE-----TTTEEEEEEECGGGCEEEE
T ss_pred             EEEEEecCCCCceEEeeeee-----ecCCCCCCCCcceeEEEC--CCCCEEEEEeC-----CCCEEEEEEECCCCcEEEe
Confidence            7777765  45554321000     02221    111223222  5777 555543     2478999999755567766


Q ss_pred             ecccHHHHHHhhhccccCCccEEEEe-eCCEEEEEeecCCeEEEE--ECCCCceEEcC
Q 018005          292 ERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYY--NVARRTWHWLP  346 (362)
Q Consensus       292 ~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~y--d~~~~~w~~~~  346 (362)
                      ..++..          .....-.++. ++..||+.....+.+.+|  |.++++.+.+.
T Consensus       279 ~~~~~~----------~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~  326 (347)
T 3hfq_A          279 QQISTE----------GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQ  326 (347)
T ss_dssp             EEEECS----------SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred             EEEecC----------CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEecc
Confidence            655310          0111122333 345788877656778777  77778777653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=95.19  E-value=1.4  Score=38.35  Aligned_cols=228  Identities=14%  Similarity=0.114  Sum_probs=116.6

Q ss_pred             ceeeeeeCCCCCeEeec-CC-cCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCce-eeccCCCCCCccceEEEEe
Q 018005           76 DQYPLYDSTHGTWRRLS-LP-YSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVS  152 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~-~~-~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w-~~lP~~~~~~~~~~~~~~~  152 (362)
                      ..+..+|+.+++...-- .. ...+......-++..++.+++....++.+.++|+.|++. ..++...   ....++++.
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~---~p~~i~~~~   93 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT---SPRYIHFLS   93 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS---SEEEEEEEE
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC---CCcEEEEeC
Confidence            46788999887654310 00 000111111222234566666554457899999999986 4454322   123444533


Q ss_pred             CCCceEEEEEeeecCCCeEEEEeCCCCcccc-cccCCCCccccccCCCcccEEECCEEEEEec-CCcEEEEEEcCCCeee
Q 018005          153 TPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK-FDIDGFPSMILSQSSHQEGVFYKGSLYFTTP-EPFSIVRFDLENGIWE  230 (362)
Q Consensus       153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~-~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~-~~~~i~~~D~~~~~w~  230 (362)
                      .  . ++++...  ....+.++|..+++-.. .+   .....-........+.-+|.+|+... ....|.++|+++.+..
T Consensus        94 ~--g-~lyv~~~--~~~~v~~iD~~t~~~~~~i~---~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~  165 (328)
T 3dsm_A           94 D--E-KAYVTQI--WDYRIFIINPKTYEITGYIE---CPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVV  165 (328)
T ss_dssp             T--T-EEEEEEB--SCSEEEEEETTTTEEEEEEE---CTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEE
T ss_pred             C--C-eEEEEEC--CCCeEEEEECCCCeEEEEEE---cCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEE
Confidence            3  2 6666552  24689999998875321 11   11000000011223346789998865 3568999999987654


Q ss_pred             c-CCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCc-----cceEEEEEECCC-CCEEEEecccHHHHHHhh
Q 018005          231 T-PNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGI-----STTMKLWELGCG-GNWIEVERVPEMMCRKFM  303 (362)
Q Consensus       231 ~-~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~-----~~~i~vw~l~~~-~~W~~v~~~p~~~~~~~~  303 (362)
                      . +....      .|.     .+...  -+|+|+++........     ...+.++  |.. ++-.+.-.++.       
T Consensus       166 ~~i~~g~------~p~-----~i~~~--~dG~l~v~~~~~~~~~~~~~~~~~v~~i--d~~t~~v~~~~~~~~-------  223 (328)
T 3dsm_A          166 DELTIGI------QPT-----SLVMD--KYNKMWTITDGGYEGSPYGYEAPSLYRI--DAETFTVEKQFKFKL-------  223 (328)
T ss_dssp             EEEECSS------CBC-----CCEEC--TTSEEEEEBCCBCTTCSSCBCCCEEEEE--ETTTTEEEEEEECCT-------
T ss_pred             EEEEcCC------Ccc-----ceEEc--CCCCEEEEECCCccCCccccCCceEEEE--ECCCCeEEEEEecCC-------
Confidence            3 22110      222     23322  5799888865210000     1345544  433 23332222221       


Q ss_pred             hccccCCccEEEEe-eCCEEEEEeecCCeEEEEECCCCceE
Q 018005          304 SVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVARRTWH  343 (362)
Q Consensus       304 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~~~~w~  343 (362)
                          +....-.++. +++.+|+...   .+.++|+++++..
T Consensus       224 ----g~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~~~~  257 (328)
T 3dsm_A          224 ----GDWPSEVQLNGTRDTLYWINN---DIWRMPVEADRVP  257 (328)
T ss_dssp             ----TCCCEEEEECTTSCEEEEESS---SEEEEETTCSSCC
T ss_pred             ----CCCceeEEEecCCCEEEEEcc---EEEEEECCCCcee
Confidence                0111122233 4678888653   8999999988753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.17  E-value=0.96  Score=37.84  Aligned_cols=139  Identities=16%  Similarity=0.074  Sum_probs=81.5

Q ss_pred             CceeeeeeCCCCCeEe-ecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCce-eeccCCCCCCccceEEEEe
Q 018005           75 YDQYPLYDSTHGTWRR-LSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVS  152 (362)
Q Consensus        75 ~~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w-~~lP~~~~~~~~~~~~~~~  152 (362)
                      .+.+..+|+.+++-.. ++++.    .....-++..++-|+.....++.++++|+.|.+- ..+|...     .+.|+..
T Consensus        42 ~S~v~~vD~~tgkv~~~~~l~~----~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-----~Gwglt~  112 (243)
T 3mbr_X           42 RSSVRKVDLETGRILQRAEVPP----PYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-----EGWALTS  112 (243)
T ss_dssp             SCEEEEEETTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-----CCCEEEE
T ss_pred             CceEEEEECCCCCEEEEEeCCC----CcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-----CceEEee
Confidence            3567889998876543 44442    1112223444677777766678999999999874 3444332     2334443


Q ss_pred             CCCceEEEEEeeecCCCeEEEEeCCCCccc-ccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeee
Q 018005          153 TPSGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE  230 (362)
Q Consensus       153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~  230 (362)
                      .+  .++++..+   +..+.++|+++.+=. ..+   +.....+........+.+|.+|.-......|.+.|+++++-.
T Consensus       113 dg--~~L~vSdg---s~~l~~iDp~t~~~~~~I~---V~~~g~~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~  183 (243)
T 3mbr_X          113 DD--SHLYMSDG---TAVIRKLDPDTLQQVGSIK---VTAGGRPLDNLNELEWVNGELLANVWLTSRIARIDPASGKVV  183 (243)
T ss_dssp             CS--SCEEEECS---SSEEEEECTTTCCEEEEEE---CEETTEECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEE
T ss_pred             CC--CEEEEECC---CCeEEEEeCCCCeEEEEEE---EccCCcccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEE
Confidence            32  25555432   468999999986532 222   111011111112344669999977766678999999987553

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.05  E-value=1  Score=44.56  Aligned_cols=190  Identities=11%  Similarity=0.156  Sum_probs=96.2

Q ss_pred             CCCeEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccC
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~  197 (362)
                      .++.+.|||..++++..+..... .....++.+.+.... ..++.++  ....+.+||..++.|....  ....    ..
T Consensus        29 ~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s--~Dg~I~vwd~~~~~~~~~~--~~~~----h~   99 (753)
T 3jro_A           29 SDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCS--YDGKVLIWKEENGRWSQIA--VHAV----HS   99 (753)
T ss_dssp             TTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSC-SEEEEEE--TTSCEEEEEEETTEEEEEE--EECC----CS
T ss_pred             CCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCC-CEEEEEe--CCCeEEEEECCCCcccccc--cccC----CC
Confidence            35678888887655544433221 122234444433212 2333333  3457899999888776554  2211    01


Q ss_pred             CCcccEEE--C--CEEEEEecCCcEEEEEEcCCCeeecC-CCCCcccccCCCCcccccceee---------cccCCCeEE
Q 018005          198 SHQEGVFY--K--GSLYFTTPEPFSIVRFDLENGIWETP-NDANDHMTMMLPHELTFFRLVN---------DGEESNKLY  263 (362)
Q Consensus       198 ~~~~~v~~--~--G~ly~~~~~~~~i~~~D~~~~~w~~~-~~p~~~~~~~~p~~~~~~~lv~---------~~~~~G~L~  263 (362)
                      .....+.+  +  |...+.++....+..||+.+..-... ....      .+..........         .+..+|.++
T Consensus       100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~------~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l  173 (753)
T 3jro_A          100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA------HAIGVNSASWAPATIEEDGEHNGTKESRKF  173 (753)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC------CSSCEEEEEECCCC---------CGGGCCE
T ss_pred             CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec------CCCceEEEEecCcccccccccccCCCCCEE
Confidence            11223333  2  66666666666899999876522111 0000      111111111100         000146677


Q ss_pred             EEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEE--eeC---CEEEEEeecCCeEEEEEC
Q 018005          264 LIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQ---GMICVCCYTWPEILYYNV  337 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~---~~i~~~~~~~~~v~~yd~  337 (362)
                      ++++     ....+.+|++..... +..+..+.            .+...+.++  ..+   +.+++.+...+.+.+||+
T Consensus       174 ~sgs-----~dg~I~iwd~~~~~~~~~~~~~~~------------~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~  236 (753)
T 3jro_A          174 VTGG-----ADNLVKIWKYNSDAQTYVLESTLE------------GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ  236 (753)
T ss_dssp             EEEE-----TTSCEEEEEEETTTTEEEEEEEEC------------CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred             EEEE-----CCCeEEEEeccCCcccceeeeeec------------CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence            7665     236799999975544 66665542            111223333  223   455666666778999999


Q ss_pred             CCC
Q 018005          338 ARR  340 (362)
Q Consensus       338 ~~~  340 (362)
                      +++
T Consensus       237 ~~~  239 (753)
T 3jro_A          237 DNE  239 (753)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            886

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.00  E-value=1.5  Score=37.67  Aligned_cols=246  Identities=6%  Similarity=-0.015  Sum_probs=117.1

Q ss_pred             eeeeeeCCCCCe-E-eecCCcCCCCCCceEEEecCCc-eEEEecCCCC--eEEEEeCCcCceeeccCCCCCCccceEEEE
Q 018005           77 QYPLYDSTHGTW-R-RLSLPYSLLLPSAATLLSSSKG-LLCFSLPSSS--SFLVCNLVTLSSRTIDFPTYPFDFELLTLV  151 (362)
Q Consensus        77 ~~~~~d~~~~~w-~-~~~~~~~~~~~~~~~~~~s~~G-ll~~~~~~~~--~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~  151 (362)
                      .+..+|+..+.. . .+...   ..+... +..+-+| .++......+  .+.+||+.+++....-+..  .....+++.
T Consensus        63 ~i~~~d~~~~~~~~~~~~~~---~~~~~~-~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~--~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVVAIQEG---QSSMAD-VDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIP--YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEEEEEEC---SSCCCC-EEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECC--TTEEEEEEC
T ss_pred             eEEEEECCCCceeEEecccC---CCCccc-eEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECC--CCccceEEC
Confidence            566778776653 2 22211   011121 2334444 5554433223  8999999998865432221  122344554


Q ss_pred             eCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCE-EEEEecCCcEEEEEEcCCCe
Q 018005          152 STPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLENGI  228 (362)
Q Consensus       152 ~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D~~~~~  228 (362)
                      +.+. + +++.... ....+.+|+...+.-....  . .. ..........+.+  +|+ +|+.......+.+||+.+.+
T Consensus       137 pdg~-~-l~~~~~~-~~~~i~~~~~~~~g~~~~~--~-~~-~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  209 (331)
T 3u4y_A          137 PNGN-G-LILIDRS-SANTVRRFKIDADGVLFDT--G-QE-FISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE  209 (331)
T ss_dssp             TTSS-C-EEEEEET-TTTEEEEEEECTTCCEEEE--E-EE-EECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred             CCCC-E-EEEEecC-CCceEEEEEECCCCcEeec--C-Cc-cccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence            4432 2 4443331 2223777776542210000  0 00 0000011223333  565 77766656689999998765


Q ss_pred             e----ecCCCCCcccccCCCCcccccceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhh
Q 018005          229 W----ETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFM  303 (362)
Q Consensus       229 w----~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~  303 (362)
                      .    ..+.           .......+...  -+|+ |++...     ....+.+|.++ .++.+.+..++....  ..
T Consensus       210 ~~~~~~~~~-----------~~~~~~~~~~s--pdg~~l~v~~~-----~~~~i~~~d~~-~~~~~~~~~~~~~~~--~~  268 (331)
T 3u4y_A          210 NITLLNAVG-----------TNNLPGTIVVS--RDGSTVYVLTE-----STVDVFNFNQL-SGTLSFVKSFGHGLL--ID  268 (331)
T ss_dssp             SCEEEEEEE-----------CSSCCCCEEEC--TTSSEEEEECS-----SEEEEEEEETT-TTEEEEEEEEECCCC--CC
T ss_pred             ccceeeecc-----------CCCCCceEEEC--CCCCEEEEEEc-----CCCEEEEEECC-CCceeeecccccccc--cC
Confidence            4    2211           11111122212  5777 555432     23557777663 344444444332100  00


Q ss_pred             hccccCCccEEEE-eeCCEEEEEeecCCeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          304 SVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       304 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                      ......... .++ .++..+|+.....+.+.+||++++.-..+...+..+...-|
T Consensus       269 ~~~~~~~~~-~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~g~~~~~  322 (331)
T 3u4y_A          269 PRPLFGANQ-MALNKTETKLFISANISRELKVFTISGKVVGYVAGIEANGGIAIC  322 (331)
T ss_dssp             CGGGTTCCC-EEECTTSSEEEEEETTTTEEEEEETTSCEEEECTTCCCBSCEEEC
T ss_pred             CCCcccccc-eEECCCCCEEEEecCCCCcEEEEEecCCcccceecccccCCeEEE
Confidence            000000011 233 34567888776677899999999988888777665544444

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.90  E-value=1.5  Score=36.98  Aligned_cols=217  Identities=13%  Similarity=0.083  Sum_probs=108.2

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCc
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG  156 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~  156 (362)
                      .+..+|+. +....+.++..  ......+....+|-+++.......+.++|+ +++...............++++..+  
T Consensus        79 ~i~~~~~~-g~~~~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g--  152 (299)
T 2z2n_A           79 KIGRITKK-GIIKEYTLPNP--DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN--  152 (299)
T ss_dssp             EEEEECTT-SCEEEEECSST--TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS--
T ss_pred             eEEEECCC-CcEEEEeCCCc--CCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC--
Confidence            45667765 44444443311  112222333446766665444578999999 7776655432211222334444332  


Q ss_pred             eEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCC
Q 018005          157 YKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPND  234 (362)
Q Consensus       157 ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~  234 (362)
                       ++++...  ....+.+||. ++......   .+. ..   ....++.+  +|.+|+.......+..||+ +.++..+. 
T Consensus       153 -~l~v~~~--~~~~i~~~~~-~g~~~~~~---~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-  219 (299)
T 2z2n_A          153 -ALWFTEN--QNNAIGRITE-SGDITEFK---IPT-PA---SGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITEFK-  219 (299)
T ss_dssp             -CEEEEET--TTTEEEEECT-TCCEEEEE---CSS-TT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE-
T ss_pred             -CEEEEeC--CCCEEEEEcC-CCcEEEee---CCC-CC---CcceeEEECCCCCEEEEccCCceEEEECC-CCcEEEEE-
Confidence             3444322  2357888988 66665432   111 00   12224444  5888877655568999999 66665543 


Q ss_pred             CCcccccCCCCcc-cccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccE
Q 018005          235 ANDHMTMMLPHEL-TFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV  313 (362)
Q Consensus       235 p~~~~~~~~p~~~-~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~  313 (362)
                              .+... .-..+...  -+|.|++...     ....+.+|..  .+....+. ++..          .....-
T Consensus       220 --------~~~~~~~~~~i~~~--~~g~l~v~~~-----~~~~i~~~d~--~g~~~~~~-~~~~----------~~~~~~  271 (299)
T 2z2n_A          220 --------IPTPNARPHAITAG--AGIDLWFTEW-----GANKIGRLTS--NNIIEEYP-IQIK----------SAEPHG  271 (299)
T ss_dssp             --------CSSTTCCEEEEEEC--STTCEEEEET-----TTTEEEEEET--TTEEEEEE-CSSS----------SCCEEE
T ss_pred             --------CCCCCCCceeEEEC--CCCCEEEecc-----CCceEEEECC--CCceEEEe-CCCC----------CCccce
Confidence                    22111 11233322  4788888753     1245555543  33322221 1100          001111


Q ss_pred             EEEeeCCEEEEEeecCCeEEEEECCCCce
Q 018005          314 YCFWHQGMICVCCYTWPEILYYNVARRTW  342 (362)
Q Consensus       314 ~~~~~~~~i~~~~~~~~~v~~yd~~~~~w  342 (362)
                      .++ .++.|++... .+.+..||+++++.
T Consensus       272 i~~-~~g~l~v~~~-~~~l~~~~~~~~~~  298 (299)
T 2z2n_A          272 ICF-DGETIWFAME-CDKIGKLTLIKDNM  298 (299)
T ss_dssp             EEE-CSSCEEEEET-TTEEEEEEEC----
T ss_pred             EEe-cCCCEEEEec-CCcEEEEEcCcccC
Confidence            223 5677888753 57899999988753

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=94.81  E-value=1.6  Score=37.05  Aligned_cols=183  Identities=9%  Similarity=0.037  Sum_probs=88.7

Q ss_pred             ceEEEecCCCCeEEEEeCCcCc--eeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCC--ccccccc
Q 018005          111 GLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ--SWSKFDI  186 (362)
Q Consensus       111 Gll~~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~--~W~~~~~  186 (362)
                      |-+++.+...+.+.++|+.|++  |.. +.. .........+.+++   ++++.    ....+..||+ ++  .|+... 
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~-~~~-~~~~~~~~~~~pdG---~ilvs----~~~~V~~~d~-~G~~~W~~~~-   73 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEY-PLE-KGWECNSVAATKAG---EILFS----YSKGAKMITR-DGRELWNIAA-   73 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEE-ECC-TTCCCCEEEECTTS---CEEEE----CBSEEEEECT-TSCEEEEEEC-
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEe-CCC-ccCCCcCeEECCCC---CEEEe----CCCCEEEECC-CCCEEEEEcC-
Confidence            3333334346789999999998  433 221 10112233333332   34442    2357889998 44  476543 


Q ss_pred             CCCCccccccCCCcccEEECCEEEEEecC-CcEEEEEEcCCC-eeecCCCCCcccccCCCCc---ccccceeecccCCCe
Q 018005          187 DGFPSMILSQSSHQEGVFYKGSLYFTTPE-PFSIVRFDLENG-IWETPNDANDHMTMMLPHE---LTFFRLVNDGEESNK  261 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-~~~i~~~D~~~~-~w~~~~~p~~~~~~~~p~~---~~~~~lv~~~~~~G~  261 (362)
                       .... .    .......-+|.+++.... ...++++|++.+ .|+. .....     .+..   .......    .+|.
T Consensus        74 -~~~~-~----~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~-~~~~~-----~~~~~~~~~~v~~~----~~G~  137 (276)
T 3no2_A           74 -PAGC-E----MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKT-EFETG-----IERPHAQFRQINKN----KKGN  137 (276)
T ss_dssp             -CTTC-E----EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE-EECCS-----CSSGGGSCSCCEEC----TTSC
T ss_pred             -CCCc-c----ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE-eccCC-----CCcccccccCceEC----CCCC
Confidence             1100 0    111122336777776554 557888888654 3433 11100     1110   0111222    5777


Q ss_pred             EEEEEEeecCCccceEEEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCC
Q 018005          262 LYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVAR  339 (362)
Q Consensus       262 L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~  339 (362)
                      ++++..     ....+.+|..  .++  |+.-..-               ......+..++.+++.......++++|+++
T Consensus       138 ~lv~~~-----~~~~v~~~d~--~G~~~w~~~~~~---------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t  195 (276)
T 3no2_A          138 YLVPLF-----ATSEVREIAP--NGQLLNSVKLSG---------------TPFSSAFLDNGDCLVACGDAHCFVQLNLES  195 (276)
T ss_dssp             EEEEET-----TTTEEEEECT--TSCEEEEEECSS---------------CCCEEEECTTSCEEEECBTTSEEEEECTTT
T ss_pred             EEEEec-----CCCEEEEECC--CCCEEEEEECCC---------------CccceeEcCCCCEEEEeCCCCeEEEEeCcC
Confidence            776543     2355666644  454  8743321               001112223344555554456799999997


Q ss_pred             Cce
Q 018005          340 RTW  342 (362)
Q Consensus       340 ~~w  342 (362)
                      ++.
T Consensus       196 G~~  198 (276)
T 3no2_A          196 NRI  198 (276)
T ss_dssp             CCE
T ss_pred             CcE
Confidence            744

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=94.81  E-value=1.7  Score=37.32  Aligned_cols=219  Identities=8%  Similarity=0.012  Sum_probs=105.0

Q ss_pred             ecCCc-eEEEecCCCCeEEEEeCC---cCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCC-Ccc
Q 018005          107 SSSKG-LLCFSLPSSSSFLVCNLV---TLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTD-QSW  181 (362)
Q Consensus       107 ~s~~G-ll~~~~~~~~~~~v~NP~---t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~-~~W  181 (362)
                      .+-+| .+++.....+.+.+|+..   +++-...-.  .......+++.+.+.  .+++...  ....+.+||..+ +..
T Consensus        91 ~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~--~l~~~~~--~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           91 TDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE--GLDGCHSANISPDNR--TLWVPAL--KQDRICLFTVSDDGHL  164 (343)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC--CCTTBCCCEECTTSS--EEEEEEG--GGTEEEEEEECTTSCE
T ss_pred             EcCCCCEEEEEecCCCeEEEEECCCCcccccccccc--CCCCceEEEECCCCC--EEEEecC--CCCEEEEEEecCCCce
Confidence            34444 565555445778999883   333222111  111223344544322  3443331  235788999876 655


Q ss_pred             cccc--cCCCCccccccCCCcccEEE--CCE-EEEEecCCcEEEEEEcC--CCeeecCCCCCcccccCCCCcc----ccc
Q 018005          182 SKFD--IDGFPSMILSQSSHQEGVFY--KGS-LYFTTPEPFSIVRFDLE--NGIWETPNDANDHMTMMLPHEL----TFF  250 (362)
Q Consensus       182 ~~~~--~~~~p~~~~~~~~~~~~v~~--~G~-ly~~~~~~~~i~~~D~~--~~~w~~~~~p~~~~~~~~p~~~----~~~  250 (362)
                      ....  ....+.    . .....+.+  +|. +|+.......+..||+.  +.++.......     .+|...    ...
T Consensus       165 ~~~~~~~~~~~~----~-~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~  234 (343)
T 1ri6_A          165 VAQDPAEVTTVE----G-AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLD-----MMPENFSDTRWAA  234 (343)
T ss_dssp             EEEEEEEEECST----T-CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEE-----CSCTTCCSCCCEE
T ss_pred             eeecccccccCC----C-CCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeecc-----ccCccccccCCcc
Confidence            4221  000111    0 11122333  464 66666555689999985  34332211000     022211    111


Q ss_pred             ceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeec
Q 018005          251 RLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYT  328 (362)
Q Consensus       251 ~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~  328 (362)
                      .+...  -+|+..++..    .....+.+|.++..+ +++.+..++..           ....-.++ ..++.+++....
T Consensus       235 ~i~~s--~dg~~l~v~~----~~~~~i~v~d~~~~~~~~~~~~~~~~~-----------~~~~~~~~s~dg~~l~~~~~~  297 (343)
T 1ri6_A          235 DIHIT--PDGRHLYACD----RTASLITVFSVSEDGSVLSKEGFQPTE-----------TQPRGFNVDHSGKYLIAAGQK  297 (343)
T ss_dssp             EEEEC--TTSSEEEEEE----TTTTEEEEEEECTTSCCEEEEEEEECS-----------SSCCCEEECTTSSEEEEECTT
T ss_pred             ceEEC--CCCCEEEEEe----cCCCEEEEEEEcCCCCceEEeeeecCC-----------CccceEEECCCCCEEEEecCC
Confidence            23211  4565433333    134789999997533 47777665321           01111223 235567777655


Q ss_pred             CCeEEEE--ECCCCceEEcCCCCCCCCCCCcc
Q 018005          329 WPEILYY--NVARRTWHWLPSCPSLPHKWSCG  358 (362)
Q Consensus       329 ~~~v~~y--d~~~~~w~~~~~~~~~~~~~~~~  358 (362)
                      .+.+.+|  |.++++++.+...+.......+.
T Consensus       298 ~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~  329 (343)
T 1ri6_A          298 SHHISVYEIVGEQGLLHEKGRYAVGQGPMWVV  329 (343)
T ss_dssp             TCEEEEEEEETTTTEEEEEEEEECSSSCCEEE
T ss_pred             CCeEEEEEEcCCCceeeEccccccCCCCeeEE
Confidence            6677777  77788888876655544444433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.81  E-value=2  Score=38.01  Aligned_cols=215  Identities=12%  Similarity=0.115  Sum_probs=110.5

Q ss_pred             eeeeeeCCCCC--eEeecCCcCCC-----CCCceEEEecCCceEEEecCCCCeEEEEeCCcCc--eeeccCCCCCCccce
Q 018005           77 QYPLYDSTHGT--WRRLSLPYSLL-----LPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTYPFDFEL  147 (362)
Q Consensus        77 ~~~~~d~~~~~--w~~~~~~~~~~-----~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~--w~~lP~~~~~~~~~~  147 (362)
                      .+.++|..+++  |.. .++....     ...........+|.+++... .+.++.+|+.|++  |..-.... ..... 
T Consensus        64 ~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~g~l~a~d~~tG~~~W~~~~~~~-~~~~p-  139 (376)
T 3q7m_A           64 LVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE-KAQVYALNTSDGTVAWQTKVAGE-ALSRP-  139 (376)
T ss_dssp             EEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEEETTEEEEEET-TSEEEEEETTTCCEEEEEECSSC-CCSCC-
T ss_pred             eEEEEEccCCceeeee-cCccccccccccCcccccCceEeCCEEEEEcC-CCEEEEEECCCCCEEEEEeCCCc-eEcCC-
Confidence            57789987664  533 2221100     11112234456777776553 4789999999998  43311111 11111 


Q ss_pred             EEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc--ccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcC
Q 018005          148 LTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLE  225 (362)
Q Consensus       148 ~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~  225 (362)
                       ....   . .|++..   ....+..||..+++  |+...  ..+.  ........++..+|.+|+-... ..+.++|++
T Consensus       140 -~~~~---~-~v~v~~---~~g~l~~~d~~tG~~~W~~~~--~~~~--~~~~~~~~~~~~~~~v~~g~~~-g~l~~~d~~  206 (376)
T 3q7m_A          140 -VVSD---G-LVLIHT---SNGQLQALNEADGAVKWTVNL--DMPS--LSLRGESAPTTAFGAAVVGGDN-GRVSAVLME  206 (376)
T ss_dssp             -EEET---T-EEEEEC---TTSEEEEEETTTCCEEEEEEC--CC-------CCCCCCEEETTEEEECCTT-TEEEEEETT
T ss_pred             -EEEC---C-EEEEEc---CCCeEEEEECCCCcEEEEEeC--CCCc--eeecCCCCcEEECCEEEEEcCC-CEEEEEECC
Confidence             1111   1 344322   23478899987765  87654  2221  1111234566778888864433 479999997


Q ss_pred             CC--eeecCCCCCcccccCCCCc---------ccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEec
Q 018005          226 NG--IWETPNDANDHMTMMLPHE---------LTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVER  293 (362)
Q Consensus       226 ~~--~w~~~~~p~~~~~~~~p~~---------~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~  293 (362)
                      +.  .|+.- .+       .|..         .....++    .+|.||+...      ...+..+..+.... |+.-..
T Consensus       207 tG~~~w~~~-~~-------~~~~~~~~~~~~~~~~~p~~----~~~~v~~~~~------~g~l~~~d~~tG~~~w~~~~~  268 (376)
T 3q7m_A          207 QGQMIWQQR-IS-------QATGSTEIDRLSDVDTTPVV----VNGVVFALAY------NGNLTALDLRSGQIMWKRELG  268 (376)
T ss_dssp             TCCEEEEEE-CC-------C-----------CCCCCCEE----ETTEEEEECT------TSCEEEEETTTCCEEEEECCC
T ss_pred             CCcEEEEEe-cc-------cCCCCcccccccccCCCcEE----ECCEEEEEec------CcEEEEEECCCCcEEeeccCC
Confidence            54  66642 11       1111         1112222    5777777642      23455554432222 774211


Q ss_pred             ccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCc--eEE
Q 018005          294 VPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT--WHW  344 (362)
Q Consensus       294 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~--w~~  344 (362)
                                     .  ....+..++.||+.. ..+.+.++|+++++  |+.
T Consensus       269 ---------------~--~~~~~~~~~~l~~~~-~~g~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          269 ---------------S--VNDFIVDGNRIYLVD-QNDRVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             ---------------C--EEEEEEETTEEEEEE-TTCCEEEEETTTCCEEEEE
T ss_pred             ---------------C--CCCceEECCEEEEEc-CCCeEEEEECCCCcEEEee
Confidence                           0  112234578888875 35689999999885  554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=94.78  E-value=1.6  Score=36.79  Aligned_cols=195  Identities=14%  Similarity=0.100  Sum_probs=101.3

Q ss_pred             EecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccc
Q 018005          106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD  185 (362)
Q Consensus       106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~  185 (362)
                      ....+|-+++.....+.+.++|+. ++...++.+........++++..+   .+++...  ....+.+||.. +..+...
T Consensus        26 ~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~--~~~~v~~~d~~-g~~~~~~   98 (300)
T 2qc5_A           26 TSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLG---DIWFTEN--GANKIGKLSKK-GGFTEYP   98 (300)
T ss_dssp             EECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS---CEEEEET--TTTEEEEECTT-SCEEEEE
T ss_pred             eECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCC---CEEEEec--CCCeEEEECCC-CCeEEec
Confidence            344566666655445789999998 777665433211222234443322   3444322  23578899887 6665443


Q ss_pred             cCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCc-ccccceeecccCCCeE
Q 018005          186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHE-LTFFRLVNDGEESNKL  262 (362)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~-~~~~~lv~~~~~~G~L  262 (362)
                         .+. .  . .....+.+  +|.+|+.......+..||++ .+.....         ++.. .....+...  .+|+|
T Consensus        99 ---~~~-~--~-~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~---------~~~~~~~~~~i~~d--~~g~l  159 (300)
T 2qc5_A           99 ---LPQ-P--D-SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYD---------LPNKGSYPAFITLG--SDNAL  159 (300)
T ss_dssp             ---CSS-T--T-CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEE---------CSSTTCCEEEEEEC--TTSSE
T ss_pred             ---CCC-C--C-CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEcc---------CCCCCCCceeEEEC--CCCCE
Confidence               121 0  0 12233444  58888776655679999998 5554332         2211 112233322  57888


Q ss_pred             EEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 018005          263 YLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW  342 (362)
Q Consensus       263 ~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w  342 (362)
                      ++...     ....  |+.++..+....+. ++..     .     ....-.++..++.+|+.....+.+..||+ +++.
T Consensus       160 ~v~~~-----~~~~--i~~~~~~g~~~~~~-~~~~-----~-----~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          160 WFTEN-----QNNS--IGRITNTGKLEEYP-LPTN-----A-----AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             EEEET-----TTTE--EEEECTTCCEEEEE-CSST-----T-----CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             EEEec-----CCCe--EEEECCCCcEEEee-CCCC-----C-----CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence            88753     1233  45556555555432 2110     0     01111122334568887655667999998 5555


Q ss_pred             EEc
Q 018005          343 HWL  345 (362)
Q Consensus       343 ~~~  345 (362)
                      ...
T Consensus       221 ~~~  223 (300)
T 2qc5_A          221 SEY  223 (300)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.61  E-value=1.3  Score=37.73  Aligned_cols=152  Identities=11%  Similarity=-0.005  Sum_probs=83.5

Q ss_pred             EEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCccc-EEECCEEEEEecCCcEEEEEEcCCCeee-cCCCC
Q 018005          158 KIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEG-VFYKGSLYFTTPEPFSIVRFDLENGIWE-TPNDA  235 (362)
Q Consensus       158 kv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~-v~~~G~ly~~~~~~~~i~~~D~~~~~w~-~~~~p  235 (362)
                      .++...+......+.++|..+++=...-  .++.     .....+ +..++.+|.++.....+.+||+++.+-. .+..+
T Consensus        33 ~Lyvstg~~~~s~v~~iD~~tg~v~~~i--~l~~-----~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g  105 (266)
T 2iwa_A           33 TLFESTGLYGRSSVRQVALQTGKVENIH--KMDD-----SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ  105 (266)
T ss_dssp             EEEEEECSTTTCEEEEEETTTCCEEEEE--ECCT-----TCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC
T ss_pred             eEEEECCCCCCCEEEEEECCCCCEEEEE--ecCC-----CcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC
Confidence            6777666545679999999988632221  1221     122223 3446799999988789999999876432 22211


Q ss_pred             CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE
Q 018005          236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC  315 (362)
Q Consensus       236 ~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~  315 (362)
                             .|.   ...+..   -+++||+..+      ..  .++.+|..+ -+.+.+++....    +......+.+..
T Consensus       106 -------~~~---g~glt~---Dg~~l~vs~g------s~--~l~viD~~t-~~v~~~I~Vg~~----~~p~~~~nele~  159 (266)
T 2iwa_A          106 -------MKD---GWGLAT---DGKILYGSDG------TS--ILYEIDPHT-FKLIKKHNVKYN----GHRVIRLNELEY  159 (266)
T ss_dssp             -------SSS---CCEEEE---CSSSEEEECS------SS--EEEEECTTT-CCEEEEEECEET----TEECCCEEEEEE
T ss_pred             -------CCC---eEEEEE---CCCEEEEECC------CC--eEEEEECCC-CcEEEEEEECCC----CcccccceeEEE
Confidence                   122   234542   2455776532      23  355556443 233333321000    000001122332


Q ss_pred             EeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          316 FWHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       316 ~~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                      .  ++.+|+.....+.|.+-|+++++-..
T Consensus       160 ~--dg~lyvn~~~~~~V~vID~~tg~V~~  186 (266)
T 2iwa_A          160 I--NGEVWANIWQTDCIARISAKDGTLLG  186 (266)
T ss_dssp             E--TTEEEEEETTSSEEEEEETTTCCEEE
T ss_pred             E--CCEEEEecCCCCeEEEEECCCCcEEE
Confidence            2  67899887777899999999985433

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=94.27  E-value=1.5  Score=37.14  Aligned_cols=138  Identities=15%  Similarity=0.052  Sum_probs=79.4

Q ss_pred             ceeeeeeCCCCCeE-eecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCce-eeccCCCCCCccceEEEEeC
Q 018005           76 DQYPLYDSTHGTWR-RLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVST  153 (362)
Q Consensus        76 ~~~~~~d~~~~~w~-~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w-~~lP~~~~~~~~~~~~~~~~  153 (362)
                      +.+..+|+.+++-. +++++.    .....-++..++-|+.....++.++++|+.|.+- ..++...     .+.|+...
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~----~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~-----eG~glt~d  135 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGK----RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG-----EGWGLTHN  135 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCT----TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-----CCCCEEEC
T ss_pred             ceEEEEECCCCcEEEEEecCC----ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-----CceEEecC
Confidence            35677898887643 344431    1112224445677777776678999999999884 3444322     22233332


Q ss_pred             CCceEEEEEeeecCCCeEEEEeCCCCccc-ccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeee
Q 018005          154 PSGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE  230 (362)
Q Consensus       154 ~~~ykv~~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~  230 (362)
                      +  .++++..+   ...+.++|+++.+=. ..+   +.....+...-....+.+|.+|.-......|.+.|+++++-.
T Consensus       136 g--~~L~~SdG---s~~i~~iDp~T~~v~~~I~---V~~~g~~~~~lNELe~~~G~lyan~w~~~~I~vIDp~tG~V~  205 (262)
T 3nol_A          136 D--QYLIMSDG---TPVLRFLDPESLTPVRTIT---VTAHGEELPELNELEWVDGEIFANVWQTNKIVRIDPETGKVT  205 (262)
T ss_dssp             S--SCEEECCS---SSEEEEECTTTCSEEEEEE---CEETTEECCCEEEEEEETTEEEEEETTSSEEEEECTTTCBEE
T ss_pred             C--CEEEEECC---CCeEEEEcCCCCeEEEEEE---eccCCccccccceeEEECCEEEEEEccCCeEEEEECCCCcEE
Confidence            2  24554332   468999999986532 222   111001101111244669999987766778999999987553

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.25  E-value=2  Score=35.67  Aligned_cols=196  Identities=11%  Similarity=0.028  Sum_probs=96.0

Q ss_pred             EecCCceEEE-ecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccc
Q 018005          106 LSSSKGLLCF-SLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF  184 (362)
Q Consensus       106 ~~s~~Gll~~-~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~  184 (362)
                      ....+|-+++ .....+.+.++|+.++....++.... ....+++++..+   ++++...   ...+.+||..++.-...
T Consensus        30 ~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g---~l~v~~~---~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           30 AVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAG---TVYVTDF---NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             EECTTCCEEEEECSSSCEEEEECC-----EECCCCSC-CSCCCEEECTTC---CEEEEET---TTEEEEECTTCSCCEEC
T ss_pred             EECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc-CCcceeEECCCC---CEEEEcC---CCEEEEEeCCCceEeee
Confidence            3345565666 54445788899998877655443211 112344554432   3554432   45788999877644333


Q ss_pred             ccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeE
Q 018005          185 DIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL  262 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L  262 (362)
                      .  . ..  .   ....++.+  +|.+|+.......|..||..+.........         ....-..+...  .+|+|
T Consensus       103 ~--~-~~--~---~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~---------~~~~p~~i~~~--~~g~l  163 (270)
T 1rwi_B          103 P--F-DG--L---NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT---------GLNDPDGVAVD--NSGNV  163 (270)
T ss_dssp             C--C-CS--C---SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC---------SCCSCCCEEEC--TTCCE
T ss_pred             e--c-CC--c---CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc---------cCCCceeEEEe--CCCCE
Confidence            2  1 10  0   11223444  588888765555788898766543321101         00011234322  47888


Q ss_pred             EEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCce
Q 018005          263 YLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTW  342 (362)
Q Consensus       263 ~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w  342 (362)
                      |+...     ....+.+|..  .+.-.......     .+      ....-.++..++.+|+.....+.|..||++.+.-
T Consensus       164 ~v~~~-----~~~~i~~~~~--~~~~~~~~~~~-----~~------~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          164 YVTDT-----DNNRVVKLEA--ESNNQVVLPFT-----DI------TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             EEEEG-----GGTEEEEECT--TTCCEEECCCS-----SC------CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             EEEEC-----CCCEEEEEec--CCCceEeeccc-----CC------CCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence            88764     2345666643  33211111110     00      0111122333457888876667899999987755


Q ss_pred             EEc
Q 018005          343 HWL  345 (362)
Q Consensus       343 ~~~  345 (362)
                      ...
T Consensus       226 ~~~  228 (270)
T 1rwi_B          226 TVL  228 (270)
T ss_dssp             EEC
T ss_pred             eee
Confidence            443

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.17  E-value=2.3  Score=36.06  Aligned_cols=139  Identities=10%  Similarity=-0.012  Sum_probs=79.5

Q ss_pred             CceeeeeeCCCCCeEe-ecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCce-eeccCCCCCCccceEEEEe
Q 018005           75 YDQYPLYDSTHGTWRR-LSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVS  152 (362)
Q Consensus        75 ~~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w-~~lP~~~~~~~~~~~~~~~  152 (362)
                      ...+..+|+.+++-.. ++++.    .....-++..++.|+.....++.+.++|+.|.+- ..+|.. .+   .+.++..
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~----~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~---~g~glt~  114 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDD----SYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK---DGWGLAT  114 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCT----TCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS---SCCEEEE
T ss_pred             CCEEEEEECCCCCEEEEEecCC----CcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC---CeEEEEE
Confidence            4567889998876443 34431    1111223334667888777778999999999874 344432 11   2233433


Q ss_pred             CCCceEEEEEeeecCCCeEEEEeCCCCccc-ccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCee
Q 018005          153 TPSGYKIFMLFAKSFPNYAFVYDSTDQSWS-KFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIW  229 (362)
Q Consensus       153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~-~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w  229 (362)
                      ++.  ++++..   ....+.+.|+++.+=. ..+   +.....+........+.+|.+|.-......|.+.|+++.+-
T Consensus       115 Dg~--~l~vs~---gs~~l~viD~~t~~v~~~I~---Vg~~~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V  184 (266)
T 2iwa_A          115 DGK--ILYGSD---GTSILYEIDPHTFKLIKKHN---VKYNGHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTL  184 (266)
T ss_dssp             CSS--SEEEEC---SSSEEEEECTTTCCEEEEEE---CEETTEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCE
T ss_pred             CCC--EEEEEC---CCCeEEEEECCCCcEEEEEE---ECCCCcccccceeEEEECCEEEEecCCCCeEEEEECCCCcE
Confidence            322  455433   2568999999885422 221   10000110011233456899997776667899999998754

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=94.12  E-value=2.3  Score=35.81  Aligned_cols=222  Identities=14%  Similarity=0.104  Sum_probs=113.5

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCC
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPS  155 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~  155 (362)
                      ..+..||+. +....+.++...  .....+....+|-+++.....+.+.++|+. ++...+..+........++++..+ 
T Consensus        41 ~~v~~~~~~-~~~~~~~~~~~~--~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-  115 (300)
T 2qc5_A           41 NKISSLDQS-GRIKEFEVPTPD--AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-  115 (300)
T ss_dssp             TEEEEECTT-SCEEEEECSSTT--CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-
T ss_pred             CeEEEECCC-CceEEEECCCCC--CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-
Confidence            356678887 666555444211  122223334566666655445789999998 776655432222222344444322 


Q ss_pred             ceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCC
Q 018005          156 GYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPN  233 (362)
Q Consensus       156 ~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~  233 (362)
                        ++++...  ....+..|+.. +......   .+.    .......+.+  +|.+|+.......+..||+ +.++..+.
T Consensus       116 --~l~v~~~--~~~~i~~~~~~-g~~~~~~---~~~----~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~  182 (300)
T 2qc5_A          116 --DIWFTQL--NGDRIGKLTAD-GTIYEYD---LPN----KGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYP  182 (300)
T ss_dssp             --CEEEEET--TTTEEEEECTT-SCEEEEE---CSS----TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE
T ss_pred             --CEEEEcc--CCCeEEEECCC-CCEEEcc---CCC----CCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEee
Confidence              3444322  23478888886 5544332   111    0012233444  5888877665567999999 55555433


Q ss_pred             CCCcccccCCCCccc-ccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCcc
Q 018005          234 DANDHMTMMLPHELT-FFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDH  312 (362)
Q Consensus       234 ~p~~~~~~~~p~~~~-~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~  312 (362)
                               .|.... -..+...  .+|.|++...     ....+.++  +..+...... ++..     .     ....
T Consensus       183 ---------~~~~~~~~~~i~~d--~~g~l~v~~~-----~~~~i~~~--~~~g~~~~~~-~~~~-----~-----~~~~  233 (300)
T 2qc5_A          183 ---------LPTNAAAPVGITSG--NDGALWFVEI-----MGNKIGRI--TTTGEISEYD-IPTP-----N-----ARPH  233 (300)
T ss_dssp             ---------CSSTTCCEEEEEEC--TTSSEEEEET-----TTTEEEEE--CTTCCEEEEE-CSST-----T-----CCEE
T ss_pred             ---------CCCCCCCcceEEEC--CCCCEEEEcc-----CCCEEEEE--cCCCcEEEEE-CCCC-----C-----CCce
Confidence                     222111 1233322  4788988764     12344444  5545554432 2200     0     0111


Q ss_pred             EEEEeeCCEEEEEeecCCeEEEEECCCCceEEc
Q 018005          313 VYCFWHQGMICVCCYTWPEILYYNVARRTWHWL  345 (362)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~  345 (362)
                      -.++..++.||+.....+.|..||+ +++....
T Consensus       234 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~  265 (300)
T 2qc5_A          234 AITAGKNSEIWFTEWGANQIGRITN-DNTIQEY  265 (300)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEECT-TSCEEEE
T ss_pred             EEEECCCCCEEEeccCCCeEEEECC-CCcEEEE
Confidence            1223334568887765678999998 4555543

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.09  E-value=2.6  Score=36.40  Aligned_cols=226  Identities=10%  Similarity=0.033  Sum_probs=110.1

Q ss_pred             eeeeeeCCCCCeEe-ecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCcee-eccCCCCC-------Cccce
Q 018005           77 QYPLYDSTHGTWRR-LSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSR-TIDFPTYP-------FDFEL  147 (362)
Q Consensus        77 ~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~-~lP~~~~~-------~~~~~  147 (362)
                      .+..+|+..++... ++.+    .......+...++.+++.....+.+.++|+.+++.. .++.....       .....
T Consensus        70 ~v~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (353)
T 3vgz_A           70 VVYRLDPVTLEVTQAIHND----LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRE  145 (353)
T ss_dssp             EEEEECTTTCCEEEEEEES----SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEE
T ss_pred             cEEEEcCCCCeEEEEEecC----CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCce
Confidence            56778887665432 2222    111222334444556666555678999999998853 33321111       11233


Q ss_pred             EEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE-CCE-EEEEecCCcEEEEEEcC
Q 018005          148 LTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY-KGS-LYFTTPEPFSIVRFDLE  225 (362)
Q Consensus       148 ~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~-~G~-ly~~~~~~~~i~~~D~~  225 (362)
                      +++.+.+.  .+++... .....+.+||..+++=...    ++.  . .......++. +|. +|.... ...+.++|+.
T Consensus       146 ~~~s~dg~--~l~~~~~-~~~~~i~~~d~~~~~~~~~----~~~--~-~~~~~~~~~s~dg~~l~~~~~-~~~i~~~d~~  214 (353)
T 3vgz_A          146 LVADDATN--TVYISGI-GKESVIWVVDGGNIKLKTA----IQN--T-GKMSTGLALDSEGKRLYTTNA-DGELITIDTA  214 (353)
T ss_dssp             EEEETTTT--EEEEEEE-SSSCEEEEEETTTTEEEEE----ECC--C-CTTCCCCEEETTTTEEEEECT-TSEEEEEETT
T ss_pred             EEECCCCC--EEEEEec-CCCceEEEEcCCCCceEEE----ecC--C-CCccceEEECCCCCEEEEEcC-CCeEEEEECC
Confidence            45554332  3444332 2345799999876542211    110  0 0011122222 554 554443 4578899998


Q ss_pred             CCeeec-CCCCCcccccCCCCcccccceeecccCCCe-EEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhh
Q 018005          226 NGIWET-PNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFM  303 (362)
Q Consensus       226 ~~~w~~-~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~  303 (362)
                      +.+-.. +..+.      .........+...  -+|+ |++...     ....+.+|+++ .++-......+        
T Consensus       215 ~~~~~~~~~~~~------~~~~~~~~~~~~s--~dg~~l~~~~~-----~~~~v~~~d~~-~~~~~~~~~~~--------  272 (353)
T 3vgz_A          215 DNKILSRKKLLD------DGKEHFFINISLD--TARQRAFITDS-----KAAEVLVVDTR-NGNILAKVAAP--------  272 (353)
T ss_dssp             TTEEEEEEECCC------SSSCCCEEEEEEE--TTTTEEEEEES-----SSSEEEEEETT-TCCEEEEEECS--------
T ss_pred             CCeEEEEEEcCC------CCCCcccceEEEC--CCCCEEEEEeC-----CCCEEEEEECC-CCcEEEEEEcC--------
Confidence            775432 22110      0001111112211  3555 555542     34678888763 33322211121        


Q ss_pred             hccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          304 SVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                           ....+....+++.+|+.....+.+.+||+++++...
T Consensus       273 -----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~  308 (353)
T 3vgz_A          273 -----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVK  308 (353)
T ss_dssp             -----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             -----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence                 111222223456788877667789999999876554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.76  E-value=1.9  Score=36.60  Aligned_cols=137  Identities=9%  Similarity=-0.165  Sum_probs=78.2

Q ss_pred             eeeeeeCCCCCeEe-ecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCce-eeccCCCCCCccceEEEEeCC
Q 018005           77 QYPLYDSTHGTWRR-LSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSS-RTIDFPTYPFDFELLTLVSTP  154 (362)
Q Consensus        77 ~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w-~~lP~~~~~~~~~~~~~~~~~  154 (362)
                      .+..+|+.+++-.. + ++.    .....-++..++-|+.....++.++++|+.|.+- ..++..+.   ..+++.+  +
T Consensus        76 ~v~~iD~~Tgkv~~~~-l~~----~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e---GwGLt~D--g  145 (268)
T 3nok_A           76 TLRQLSLESAQPVWME-RLG----NIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE---GWGLCYW--N  145 (268)
T ss_dssp             EEEECCSSCSSCSEEE-ECT----TCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC---CCCEEEE--T
T ss_pred             EEEEEECCCCcEEeEE-CCC----CcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc---eeEEecC--C
Confidence            46778887765322 3 331    1111224455667777766678999999999884 34443221   1233332  2


Q ss_pred             CceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeee
Q 018005          155 SGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWE  230 (362)
Q Consensus       155 ~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~  230 (362)
                        .++++..   ....+.++|+++.+=...-  .+.....+........+.+|.+|.-......|.+.|+++++-.
T Consensus       146 --~~L~vSd---Gs~~l~~iDp~T~~v~~~I--~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~  214 (268)
T 3nok_A          146 --GKLVRSD---GGTMLTFHEPDGFALVGAV--QVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTVV  214 (268)
T ss_dssp             --TEEEEEC---SSSEEEEECTTTCCEEEEE--ECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEE
T ss_pred             --CEEEEEC---CCCEEEEEcCCCCeEEEEE--EeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEE
Confidence              2555543   2568999999986532211  1111011111112334669999977766778999999987553

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=93.20  E-value=2  Score=37.78  Aligned_cols=144  Identities=10%  Similarity=0.035  Sum_probs=65.0

Q ss_pred             ecCCCCeEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc-ccccccCCCCccc
Q 018005          116 SLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSKFDIDGFPSMI  193 (362)
Q Consensus       116 ~~~~~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~p~~~  193 (362)
                      .+..++.+.+||..++.+..+..... ......+.+.+.+   +.++.++  ....+.+||..++. |....  .+..  
T Consensus        28 ~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s--~d~~v~vwd~~~~~~~~~~~--~~~~--   98 (377)
T 3dwl_C           28 TTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCS--QDRNAYVYEKRPDGTWKQTL--VLLR--   98 (377)
T ss_dssp             CCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEE--TTSSEEEC------CCCCEE--ECCC--
T ss_pred             EecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEe--CCCeEEEEEcCCCCceeeee--Eecc--
Confidence            33345778899999987665544432 2223344454332   2333333  34578999998876 54433  1111  


Q ss_pred             cccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCe-eecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeec
Q 018005          194 LSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI-WETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGR  270 (362)
Q Consensus       194 ~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~-w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~  270 (362)
                        .......+.+  +|...+.+.....+..||+.+.+ |.....-.      .+....-..+...  -+|++++.+..  
T Consensus        99 --~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~h~~~v~~~~~~--~~~~~l~~~~~--  166 (377)
T 3dwl_C           99 --LNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLK------RPLRSTILSLDWH--PNNVLLAAGCA--  166 (377)
T ss_dssp             --CSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEEC------SSCCSCEEEEEEC--TTSSEEEEEES--
T ss_pred             --cCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEee------cccCCCeEEEEEc--CCCCEEEEEeC--
Confidence              0011112222  45555555554578888887654 32211000      1111111222211  46777777652  


Q ss_pred             CCccceEEEEEEC
Q 018005          271 NGISTTMKLWELG  283 (362)
Q Consensus       271 ~~~~~~i~vw~l~  283 (362)
                         ...+.+|+++
T Consensus       167 ---d~~i~iwd~~  176 (377)
T 3dwl_C          167 ---DRKAYVLSAY  176 (377)
T ss_dssp             ---SSCEEEEEEC
T ss_pred             ---CCEEEEEEEE
Confidence               3679999985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=93.18  E-value=3.7  Score=35.18  Aligned_cols=208  Identities=13%  Similarity=0.096  Sum_probs=98.1

Q ss_pred             cCCc-eEEEecCCCCeEEEEeCC--cCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc-ccc
Q 018005          108 SSKG-LLCFSLPSSSSFLVCNLV--TLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSK  183 (362)
Q Consensus       108 s~~G-ll~~~~~~~~~~~v~NP~--t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~-W~~  183 (362)
                      +-+| .+++.....+.+.+|+..  +++...+...+.......+++.+.+.  .+++...  ....+.+||..++. ...
T Consensus        46 spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~--~~~~i~~~d~~~~~~~~~  121 (343)
T 1ri6_A           46 SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSY--NAGNVSVTRLEDGLPVGV  121 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEET--TTTEEEEEEEETTEEEEE
T ss_pred             CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCC--EEEEEec--CCCeEEEEECCCCccccc
Confidence            3344 455554434778887766  77765543222111223444543322  2333332  23568888874321 122


Q ss_pred             cccCCCCccccccCCCcccEEE--CC-EEEEEecCCcEEEEEEcCC-CeeecCC---CCCcccccCCCCcccccceeecc
Q 018005          184 FDIDGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLEN-GIWETPN---DANDHMTMMLPHELTFFRLVNDG  256 (362)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~v~~--~G-~ly~~~~~~~~i~~~D~~~-~~w~~~~---~p~~~~~~~~p~~~~~~~lv~~~  256 (362)
                      ..  ..+.     ......+.+  +| .+|........+..||+.+ .+...+.   ..       .+.+.....+... 
T Consensus       122 ~~--~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-  186 (343)
T 1ri6_A          122 VD--VVEG-----LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVT-------TVEGAGPRHMVFH-  186 (343)
T ss_dssp             EE--EECC-----CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEE-------CSTTCCEEEEEEC-
T ss_pred             cc--cccC-----CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccc-------cCCCCCcceEEEC-
Confidence            21  1111     011122222  45 4665553445799999987 5554211   01       1111111122212 


Q ss_pred             cCCCe-EEEEEEeecCCccceEEEEEECCC-CCEEEE---ecccHHHHHHhhhccccCCccE--EEEe-eCCEEEEEeec
Q 018005          257 EESNK-LYLIGGVGRNGISTTMKLWELGCG-GNWIEV---ERVPEMMCRKFMSVCYHNYDHV--YCFW-HQGMICVCCYT  328 (362)
Q Consensus       257 ~~~G~-L~vv~~~~~~~~~~~i~vw~l~~~-~~W~~v---~~~p~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~~  328 (362)
                       -+|+ |++.+.     ....+.+|.++.. +.+...   ..++..    +     ......  .++. .+..+++....
T Consensus       187 -pdg~~l~~~~~-----~~~~i~~~~~~~~~g~~~~~~~~~~~~~~----~-----~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          187 -PNEQYAYCVNE-----LNSSVDVWELKDPHGNIECVQTLDMMPEN----F-----SDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             -TTSSEEEEEET-----TTTEEEEEESSCTTSCCEEEEEEECSCTT----C-----CSCCCEEEEEECTTSSEEEEEETT
T ss_pred             -CCCCEEEEEeC-----CCCEEEEEEecCCCCcEEEEeeccccCcc----c-----cccCCccceEECCCCCEEEEEecC
Confidence             4676 555542     3478999998643 334333   333311    0     000111  2222 34577776656


Q ss_pred             CCeEEEEECC--CCceEEcCCCC
Q 018005          329 WPEILYYNVA--RRTWHWLPSCP  349 (362)
Q Consensus       329 ~~~v~~yd~~--~~~w~~~~~~~  349 (362)
                      .+.+.+||++  +++.+.+...+
T Consensus       252 ~~~i~v~d~~~~~~~~~~~~~~~  274 (343)
T 1ri6_A          252 ASLITVFSVSEDGSVLSKEGFQP  274 (343)
T ss_dssp             TTEEEEEEECTTSCCEEEEEEEE
T ss_pred             CCEEEEEEEcCCCCceEEeeeec
Confidence            6789999998  55666654433

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=92.75  E-value=4.2  Score=34.66  Aligned_cols=189  Identities=11%  Similarity=0.067  Sum_probs=91.5

Q ss_pred             cCCc-eEEEecCCCCeEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccc
Q 018005          108 SSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD  185 (362)
Q Consensus       108 s~~G-ll~~~~~~~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~  185 (362)
                      +.+| +++.. ..++.+.+||..+++......... ......+.+.+.+   +.++.++  ....+.+||..++.-...-
T Consensus       106 ~~~~~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~dg~v~~~d~~~~~~~~~~  179 (337)
T 1gxr_A          106 LPDGCTLIVG-GEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS---KVCFSCC--SDGNIAVWDLHNQTLVRQF  179 (337)
T ss_dssp             CTTSSEEEEE-ESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS---SEEEEEE--TTSCEEEEETTTTEEEEEE
T ss_pred             cCCCCEEEEE-cCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC---CEEEEEe--CCCcEEEEeCCCCceeeee
Confidence            3345 33333 345789999999887433322211 1122233443322   2333333  2357889998876432211


Q ss_pred             cCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEE
Q 018005          186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY  263 (362)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~  263 (362)
                          ..    .......+.+  +|...+.+.....+..||+.+.+-.... .       .+.......+.    -+|+++
T Consensus       180 ----~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~-------~~~~v~~~~~s----~~~~~l  239 (337)
T 1gxr_A          180 ----QG----HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-D-------FTSQIFSLGYC----PTGEWL  239 (337)
T ss_dssp             ----CC----CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-E-------CSSCEEEEEEC----TTSSEE
T ss_pred             ----ec----ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-c-------CCCceEEEEEC----CCCCEE
Confidence                10    0011122333  5666666665568999999876443211 1       22222222221    467777


Q ss_pred             EEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCc
Q 018005          264 LIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      +++.     ....+.+|.++...... ...               ....+..+  ..++..++.....+.+.+||+++++
T Consensus       240 ~~~~-----~~~~i~~~~~~~~~~~~-~~~---------------~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          240 AVGM-----ESSNVEVLHVNKPDKYQ-LHL---------------HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             EEEE-----TTSCEEEEETTSSCEEE-ECC---------------CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EEEc-----CCCcEEEEECCCCCeEE-EcC---------------CccceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            7765     23678999885433221 110               11112222  2233334444456678889988875


Q ss_pred             eE
Q 018005          342 WH  343 (362)
Q Consensus       342 w~  343 (362)
                      -.
T Consensus       299 ~~  300 (337)
T 1gxr_A          299 SI  300 (337)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.70  E-value=4.4  Score=34.80  Aligned_cols=113  Identities=12%  Similarity=0.126  Sum_probs=56.4

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCC-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      .+|-.++.+..++.+.+||..+++...+..+ ........+++.+.... .+++.++  ....+.+||..++.|....  
T Consensus        23 ~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~-~~l~s~s--~D~~v~iWd~~~~~~~~~~--   97 (316)
T 3bg1_A           23 YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYG-NILASCS--YDRKVIIWREENGTWEKSH--   97 (316)
T ss_dssp             GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGS-SCEEEEE--TTSCEEEECCSSSCCCEEE--
T ss_pred             CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCC-CEEEEEE--CCCEEEEEECCCCcceEEE--
Confidence            3443333343467889999887754322211 11112223444321111 2333333  3467999999888775543  


Q ss_pred             CCCccccccCCCcccEEE--C--CEEEEEecCCcEEEEEEcCCC-eee
Q 018005          188 GFPSMILSQSSHQEGVFY--K--GSLYFTTPEPFSIVRFDLENG-IWE  230 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~--~--G~ly~~~~~~~~i~~~D~~~~-~w~  230 (362)
                      .+..    ....-..+.+  +  |.+...+.....+..+|..++ .|.
T Consensus        98 ~~~~----h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~  141 (316)
T 3bg1_A           98 EHAG----HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWE  141 (316)
T ss_dssp             EECC----CSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEE
T ss_pred             EccC----CCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcc
Confidence            1111    0011223333  2  555555555557888998765 454

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.64  E-value=5.6  Score=35.86  Aligned_cols=214  Identities=11%  Similarity=0.100  Sum_probs=103.1

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCc
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG  156 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~  156 (362)
                      .+.++|...+.....-..    .......++. +|-+++.+..++.+.+||..+++....-.. .......+.+  .+ .
T Consensus       154 ~i~iwd~~~~~~~~~~~~----h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~--~~-~  224 (435)
T 1p22_A          154 TIKIWDKNTLECKRILTG----HTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRF--NN-G  224 (435)
T ss_dssp             CEEEEESSSCCEEEEECC----CSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEEC--CT-T
T ss_pred             eEEEEeCCCCeEEEEEcC----CCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEE--cC-C
Confidence            355666655443222101    1123334444 443333343468899999999875432211 1111122222  22 2


Q ss_pred             eEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCC
Q 018005          157 YKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDAN  236 (362)
Q Consensus       157 ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~  236 (362)
                        .++.++  ....+.+||..++.-..... ....    .......+..+|...+.++....+..||+.+.+-...... 
T Consensus       225 --~l~s~s--~dg~i~vwd~~~~~~~~~~~-~~~~----~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-  294 (435)
T 1p22_A          225 --MMVTCS--KDRSIAVWDMASPTDITLRR-VLVG----HRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG-  294 (435)
T ss_dssp             --EEEEEE--TTSCEEEEECSSSSCCEEEE-EECC----CSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEEC-
T ss_pred             --EEEEee--CCCcEEEEeCCCCCCceeee-EecC----CCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcC-
Confidence              333333  34578899987654221100 0000    1112234445776666666666899999987643221101 


Q ss_pred             cccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE
Q 018005          237 DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF  316 (362)
Q Consensus       237 ~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~  316 (362)
                            ...   ....+ .  .+|.++++++     ....+.+|++... .  .+..+.            .+...+.++
T Consensus       295 ------~~~---~v~~~-~--~~~~~l~~g~-----~dg~i~iwd~~~~-~--~~~~~~------------~h~~~v~~~  342 (435)
T 1p22_A          295 ------HKR---GIACL-Q--YRDRLVVSGS-----SDNTIRLWDIECG-A--CLRVLE------------GHEELVRCI  342 (435)
T ss_dssp             ------CSS---CEEEE-E--EETTEEEEEE-----TTSCEEEEETTTC-C--EEEEEC------------CCSSCEEEE
T ss_pred             ------CCC---cEEEE-E--eCCCEEEEEe-----CCCeEEEEECCCC-C--EEEEEe------------CCcCcEEEE
Confidence                  111   11222 2  5677777765     2368999988532 2  222221            111233444


Q ss_pred             eeCCEEEEEeecCCeEEEEECCCCc
Q 018005          317 WHQGMICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       317 ~~~~~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      .-++..++.+...+.|.+||+++.+
T Consensus       343 ~~~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          343 RFDNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred             EecCCEEEEEeCCCcEEEEECCCCC
Confidence            3344345555566789999987653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=92.64  E-value=4.7  Score=35.00  Aligned_cols=138  Identities=7%  Similarity=0.026  Sum_probs=69.7

Q ss_pred             CCCeEEEEeCCcCceeeccCCC-CCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccC
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~-~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~  197 (362)
                      .++.+.+||..++++..+.... .......+.+.+.+   +.++.++  ....+.+||..++.+....  ....    ..
T Consensus        28 ~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~~~~--~dg~i~vwd~~~~~~~~~~--~~~~----~~   96 (372)
T 1k8k_C           28 NNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS---NRIVTCG--TDRNAYVWTLKGRTWKPTL--VILR----IN   96 (372)
T ss_dssp             SSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT---TEEEEEE--TTSCEEEEEEETTEEEEEE--ECCC----CS
T ss_pred             CCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC---CEEEEEc--CCCeEEEEECCCCeeeeeE--Eeec----CC
Confidence            4678999999998644333221 12223344554432   2333333  3457899999887765433  1111    00


Q ss_pred             CCcccEEE--CCEEEEEecCCcEEEEEEcCCCe-eec---CCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005          198 SHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI-WET---PNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN  271 (362)
Q Consensus       198 ~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~-w~~---~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~  271 (362)
                      .....+.+  +|...+.+.....+..||+.+.. +..   +..+       .....  ..+...  -+|++++++.    
T Consensus        97 ~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-------~~~~i--~~~~~~--~~~~~l~~~~----  161 (372)
T 1k8k_C           97 RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-------IRSTV--LSLDWH--PNSVLLAAGS----  161 (372)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-------CCSCE--EEEEEC--TTSSEEEEEE----
T ss_pred             CceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecc-------cCCCe--eEEEEc--CCCCEEEEEc----
Confidence            11122222  46655555555568888887543 221   1111       11111  122211  4677777665    


Q ss_pred             CccceEEEEEEC
Q 018005          272 GISTTMKLWELG  283 (362)
Q Consensus       272 ~~~~~i~vw~l~  283 (362)
                       ....+.+|++.
T Consensus       162 -~dg~i~~~d~~  172 (372)
T 1k8k_C          162 -CDFKCRIFSAY  172 (372)
T ss_dssp             -TTSCEEEEECC
T ss_pred             -CCCCEEEEEcc
Confidence             23678999863

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=92.63  E-value=5.5  Score=35.76  Aligned_cols=148  Identities=11%  Similarity=0.077  Sum_probs=78.6

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCCCC-CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY-PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~-~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      |.+++|-+..  ++.+++||..|++...+-.... .....++++.+.+   +.++.++  ....+.+||.+++.=...- 
T Consensus       114 S~~n~lAvgl--d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg---~~lasgs--~Dg~v~iWd~~~~~~~~~~-  185 (420)
T 4gga_A          114 SSGNVLAVAL--DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEG---NYLAVGT--SSAEVQLWDVQQQKRLRNM-  185 (420)
T ss_dssp             CTTSEEEEEE--TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTS---SEEEEEE--TTSCEEEEETTTTEEEEEE-
T ss_pred             CCCCEEEEEe--CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCC---CEEEEEE--CCCeEEEEEcCCCcEEEEE-
Confidence            4456655443  4789999999999766543322 2233455565433   3344444  3468999999876421111 


Q ss_pred             CCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEE
Q 018005          187 DGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIG  266 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~  266 (362)
                         ..    .......+..++.+...+.....+..+|.............      ......... . .  .+|+..+.+
T Consensus       186 ---~~----h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~------h~~~~~~~~-~-~--~~g~~l~s~  248 (420)
T 4gga_A          186 ---TS----HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG------HSQEVCGLR-W-A--PDGRHLASG  248 (420)
T ss_dssp             ---CC----CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC------CSSCEEEEE-E-C--TTSSEEEEE
T ss_pred             ---eC----CCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecc------cccceeeee-e-c--CCCCeeeee
Confidence               11    01122345557776666666667888887654322211000      111111111 1 1  567766666


Q ss_pred             EeecCCccceEEEEEECCC
Q 018005          267 GVGRNGISTTMKLWELGCG  285 (362)
Q Consensus       267 ~~~~~~~~~~i~vw~l~~~  285 (362)
                      +     ....+.+|.....
T Consensus       249 ~-----~D~~v~i~~~~~~  262 (420)
T 4gga_A          249 G-----NDNLVNVWPSAPG  262 (420)
T ss_dssp             E-----TTSCEEEEESSCC
T ss_pred             e-----ccccceEEeeccc
Confidence            5     2367889987543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.34  E-value=4.2  Score=33.66  Aligned_cols=190  Identities=11%  Similarity=0.056  Sum_probs=97.9

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      ..+|-+++... .+.+.++|+.++....++.... .....++++..+   ++++...  ....+.+|+.++.......  
T Consensus        75 ~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g---~l~v~~~--~~~~i~~~~~~~~~~~~~~--  145 (270)
T 1rwi_B           75 DGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQG---AVYVADR--GNNRVVKLAAGSKTQTVLP--  145 (270)
T ss_dssp             CTTCCEEEEET-TTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTC---CEEEEEG--GGTEEEEECTTCCSCEECC--
T ss_pred             CCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCc-CCCcceEECCCC---CEEEEEC--CCCEEEEEECCCceeEeec--
Confidence            34565655554 5789999998877655543211 112244444332   3554432  2346788877665443222  


Q ss_pred             CCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEE
Q 018005          188 GFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLI  265 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv  265 (362)
                      .  . ..   ....++.+  +|.+|+.......|..||+.+..........      +   .....+...  -+|.||+.
T Consensus       146 ~--~-~~---~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~------~---~~p~~i~~d--~~g~l~v~  208 (270)
T 1rwi_B          146 F--T-GL---NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTD------I---TAPWGIAVD--EAGTVYVT  208 (270)
T ss_dssp             C--C-SC---CSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSS------C---CSEEEEEEC--TTCCEEEE
T ss_pred             c--c-cC---CCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccC------C---CCceEEEEC--CCCCEEEE
Confidence            0  0 00   12234444  5888887765558999999876543321110      1   111233322  56788888


Q ss_pred             EEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCc
Q 018005          266 GGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       266 ~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      ..     ....+.+|  +..+.-.......        .   .....-.++..++.+|+.....+.|.+|++...+
T Consensus       209 ~~-----~~~~v~~~--~~~~~~~~~~~~~--------~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          209 EH-----NTNQVVKL--LAGSTTSTVLPFT--------G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             ET-----TTSCEEEE--CTTCSCCEECCCC--------S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             EC-----CCCcEEEE--cCCCCcceeeccC--------C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            64     22456666  4333311111000        0   0011112233345689988777899999988764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=92.24  E-value=8.4  Score=40.12  Aligned_cols=149  Identities=12%  Similarity=0.061  Sum_probs=74.7

Q ss_pred             ecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       107 ~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      -+-+|-.++.+..++.+.+||..|++...--. .......++++.+++   +.++.++  ....+.+||..++.-...-.
T Consensus       623 ~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~---~~l~s~~--~d~~v~vwd~~~~~~~~~~~  696 (1249)
T 3sfz_A          623 FSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDD---SYIATCS--ADKKVKIWDSATGKLVHTYD  696 (1249)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTS---SEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCC---CEEEEEe--CCCeEEEEECCCCceEEEEc
Confidence            34455333344456789999999987533211 111222344444332   2333343  34589999998764322110


Q ss_pred             CCCCccccccCCCcccEEE----CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeE
Q 018005          187 DGFPSMILSQSSHQEGVFY----KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL  262 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~----~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L  262 (362)
                       ...       .....+.+    ++.+.+.++....+..+|+.+.+.......       ..........  .  -+|++
T Consensus       697 -~~~-------~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-------h~~~v~~~~~--s--p~~~~  757 (1249)
T 3sfz_A          697 -EHS-------EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-------HTNSVNHCRF--S--PDDEL  757 (1249)
T ss_dssp             -CCS-------SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-------CSSCEEEEEE--C--SSTTE
T ss_pred             -CCC-------CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-------CCCCEEEEEE--e--cCCCE
Confidence             100       11112222    334444455555789999987654321111       1122222222  1  57777


Q ss_pred             EEEEEeecCCccceEEEEEECCC
Q 018005          263 YLIGGVGRNGISTTMKLWELGCG  285 (362)
Q Consensus       263 ~vv~~~~~~~~~~~i~vw~l~~~  285 (362)
                      ++.+.     ....+.+|++...
T Consensus       758 l~s~s-----~dg~v~vwd~~~~  775 (1249)
T 3sfz_A          758 LASCS-----ADGTLRLWDVRSA  775 (1249)
T ss_dssp             EEEEE-----SSSEEEEEEGGGT
T ss_pred             EEEEE-----CCCeEEEEeCCCC
Confidence            76665     2368999988533

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=92.15  E-value=4.7  Score=33.82  Aligned_cols=150  Identities=10%  Similarity=0.082  Sum_probs=80.1

Q ss_pred             ecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       107 ~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      ...+|-+++.......+.++|+..+....+.....-....+++++..+   ++++...  ....+.+|+.....-.... 
T Consensus       128 ~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g---~l~v~~~--~~~~i~~~~~~g~~~~~~~-  201 (286)
T 1q7f_A          128 VDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQ---EIFISDN--RAHCVKVFNYEGQYLRQIG-  201 (286)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSS---EEEEEEG--GGTEEEEEETTCCEEEEES-
T ss_pred             EeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCC---CEEEEEC--CCCEEEEEcCCCCEEEEEc-
Confidence            344666666654457899999876555544322111122344444332   4555433  2357899998654333322 


Q ss_pred             CCCCccccccCCCcccEEE--CCEEEEEecCCc-EEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEE
Q 018005          187 DGFPSMILSQSSHQEGVFY--KGSLYFTTPEPF-SIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY  263 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~-~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~  263 (362)
                       . .. .+   ....++.+  +|.+|+...... .|.+||+..+....+...       .+.. ....+...  -+|+|+
T Consensus       202 -~-~g-~~---~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~-------~~~~-~~~~i~~~--~~g~l~  265 (286)
T 1q7f_A          202 -G-EG-IT---NYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESK-------VKHA-QCFDVALM--DDGSVV  265 (286)
T ss_dssp             -C-TT-TS---CSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEES-------SCCS-CEEEEEEE--TTTEEE
T ss_pred             -c-CC-cc---CCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEccc-------CCCC-cceeEEEC--CCCcEE
Confidence             1 10 00   12234555  688888776554 899999876544443212       1111 11123322  589988


Q ss_pred             EEEEeecCCccceEEEEEECC
Q 018005          264 LIGGVGRNGISTTMKLWELGC  284 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~  284 (362)
                      +...      ..++.+|++..
T Consensus       266 vs~~------~~~v~v~~~~~  280 (286)
T 1q7f_A          266 LASK------DYRLYIYRYVQ  280 (286)
T ss_dssp             EEET------TTEEEEEECSC
T ss_pred             EECC------CCeEEEEEccc
Confidence            8742      27899998753

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=92.08  E-value=5.9  Score=34.87  Aligned_cols=198  Identities=8%  Similarity=0.024  Sum_probs=95.7

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCc--eeeccCCCC------CCcc-ceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLS--SRTIDFPTY------PFDF-ELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQ  179 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~--w~~lP~~~~------~~~~-~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~  179 (362)
                      .+|.|++... .+.++.+|+.|++  |..-.....      .... .......    -+|++..   ....+..+|.+++
T Consensus        52 ~~~~v~~~~~-~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~v~~---~~g~l~a~d~~tG  123 (376)
T 3q7m_A           52 ADNVVYAADR-AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG----GHVYIGS---EKAQVYALNTSDG  123 (376)
T ss_dssp             ETTEEEEECT-TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET----TEEEEEE---TTSEEEEEETTTC
T ss_pred             ECCEEEEEcC-CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC----CEEEEEc---CCCEEEEEECCCC
Confidence            4666666553 4688999999988  433221110      0001 1111211    1444432   2357889998766


Q ss_pred             c--ccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCC--eeecCCCCCcccccCCCCcccccceeec
Q 018005          180 S--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENG--IWETPNDANDHMTMMLPHELTFFRLVND  255 (362)
Q Consensus       180 ~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~--~w~~~~~p~~~~~~~~p~~~~~~~lv~~  255 (362)
                      +  |+...  .  .     .....++..+|.+|+..... .+.+||.++.  .|+.-. +..     ..........+. 
T Consensus       124 ~~~W~~~~--~--~-----~~~~~p~~~~~~v~v~~~~g-~l~~~d~~tG~~~W~~~~-~~~-----~~~~~~~~~~~~-  186 (376)
T 3q7m_A          124 TVAWQTKV--A--G-----EALSRPVVSDGLVLIHTSNG-QLQALNEADGAVKWTVNL-DMP-----SLSLRGESAPTT-  186 (376)
T ss_dssp             CEEEEEEC--S--S-----CCCSCCEEETTEEEEECTTS-EEEEEETTTCCEEEEEEC-CC----------CCCCCCEE-
T ss_pred             CEEEEEeC--C--C-----ceEcCCEEECCEEEEEcCCC-eEEEEECCCCcEEEEEeC-CCC-----ceeecCCCCcEE-
Confidence            4  76543  1  1     12344677789888765443 7999998765  576521 100     000001112221 


Q ss_pred             ccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEE
Q 018005          256 GEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY  334 (362)
Q Consensus       256 ~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~  334 (362)
                        .+|.+++...      ...+..+..+.... |+.-...|.... ...+..  . .....+..++.||+.. ..+.+.+
T Consensus       187 --~~~~v~~g~~------~g~l~~~d~~tG~~~w~~~~~~~~~~~-~~~~~~--~-~~~~p~~~~~~v~~~~-~~g~l~~  253 (376)
T 3q7m_A          187 --AFGAAVVGGD------NGRVSAVLMEQGQMIWQQRISQATGST-EIDRLS--D-VDTTPVVVNGVVFALA-YNGNLTA  253 (376)
T ss_dssp             --ETTEEEECCT------TTEEEEEETTTCCEEEEEECCC--------------C-CCCCCEEETTEEEEEC-TTSCEEE
T ss_pred             --ECCEEEEEcC------CCEEEEEECCCCcEEEEEecccCCCCc-cccccc--c-cCCCcEEECCEEEEEe-cCcEEEE
Confidence              4666555321      23455554432222 876543322110 000000  0 0011123467888865 3568999


Q ss_pred             EECCCCc--eEE
Q 018005          335 YNVARRT--WHW  344 (362)
Q Consensus       335 yd~~~~~--w~~  344 (362)
                      +|+++++  |+.
T Consensus       254 ~d~~tG~~~w~~  265 (376)
T 3q7m_A          254 LDLRSGQIMWKR  265 (376)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCcEEeec
Confidence            9999874  544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=92.04  E-value=10  Score=37.59  Aligned_cols=191  Identities=12%  Similarity=0.004  Sum_probs=96.6

Q ss_pred             CCceEEEecCCCCeEEEEeCCcC----ceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccc
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTL----SSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKF  184 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~----~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~  184 (362)
                      .+|.||+.....+.++.+++...    ....+-.... ..-.+++++..+  -+||+...  ....+++++.....-+.+
T Consensus       434 ~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l-~~P~GLAvD~~~--~~LY~tD~--~~~~I~v~~ldG~~~~~l  508 (791)
T 3m0c_C          434 ASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAPDGLAVDWIH--SNIYWTDS--VLGTVSVADTKGVKRKTL  508 (791)
T ss_dssp             TTTEEEEEETTTTEEEEEEC--------CEEEECSSC-SCCCEEEEETTT--TEEEEEET--TTTEEEEEETTSSSEEEE
T ss_pred             cCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCC-CCcceeeeeecC--CcEEEEec--CCCeEEEEeCCCCeEEEE
Confidence            35666666554566666666542    1122211000 112355665332  25666543  345888888875543333


Q ss_pred             ccCCCCccccccCCCcccEEE---CCEEEEEecCC-cEEEEEEcCCCeeecCCCCCcccccCCCCcccc-cceeecccCC
Q 018005          185 DIDGFPSMILSQSSHQEGVFY---KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELTF-FRLVNDGEES  259 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~---~G~ly~~~~~~-~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~-~~lv~~~~~~  259 (362)
                      .  .  .    ......++++   +|.|||..... ..|.++++....-..+.          ...... ..|++. ..+
T Consensus       509 ~--~--~----~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv----------~~~l~~P~GLavD-~~~  569 (791)
T 3m0c_C          509 F--R--E----NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV----------TENIQWPNGITLD-LLS  569 (791)
T ss_dssp             E--E--C----TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE----------CSSCSCEEEEEEE-TTT
T ss_pred             E--e--C----CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE----------eCCCCCceEEEEe-cCC
Confidence            2  0  0    0112445666   58999997543 57999999764333321          111111 123320 147


Q ss_pred             CeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCC
Q 018005          260 NKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVAR  339 (362)
Q Consensus       260 G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~  339 (362)
                      |+||++..     ....|++..++.....+.+..-.      .+      ...+.....++.||+.......|...|..+
T Consensus       570 ~~LYwaD~-----~~~~I~~~d~dG~~~~~v~~~~~------~l------~~P~glav~~~~lYwtD~~~~~I~~~dk~t  632 (791)
T 3m0c_C          570 GRLYWVDS-----KLHSISSIDVNGGNRKTILEDEK------RL------AHPFSLAVFEDKVFWTDIINEAIFSANRLT  632 (791)
T ss_dssp             TEEEEEET-----TTTEEEEEETTSCSCEEEEECTT------TT------SSEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             CeEEEEeC-----CCCcEEEEecCCCceEEEecCCC------cc------CCCCEEEEeCCEEEEEECCCCEEEEEeCCC
Confidence            89999965     23566666554222244433210      00      012222235678888877777888888765


Q ss_pred             C
Q 018005          340 R  340 (362)
Q Consensus       340 ~  340 (362)
                      +
T Consensus       633 G  633 (791)
T 3m0c_C          633 G  633 (791)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=92.00  E-value=6  Score=34.75  Aligned_cols=181  Identities=10%  Similarity=0.001  Sum_probs=91.3

Q ss_pred             CCeEEEEeCCcCceeeccCC-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCC
Q 018005          120 SSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS  198 (362)
Q Consensus       120 ~~~~~v~NP~t~~w~~lP~~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~  198 (362)
                      ++.+.+||..+++....-.. ........+.+.+.  .-..++.++  ....+.+||..++......  ....  .  ..
T Consensus        95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~~--~d~~i~iwd~~~~~~~~~~--~~~~--~--~~  164 (383)
T 3ei3_B           95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQF--NTNQLFVSS--IRGATTLRDFSGSVIQVFA--KTDS--W--DY  164 (383)
T ss_dssp             TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETT--EEEEEEEEE--TTTEEEEEETTSCEEEEEE--CCCC--S--SC
T ss_pred             CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCC--CCCEEEEEe--CCCEEEEEECCCCceEEEe--ccCC--C--CC
Confidence            56788999998886554332 22223334444431  223444443  3468899999876655443  1111  0  00


Q ss_pred             CcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCe-EEEEEEeecCCccc
Q 018005          199 HQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK-LYLIGGVGRNGIST  275 (362)
Q Consensus       199 ~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L~vv~~~~~~~~~~  275 (362)
                      ....+.+  +|...+.+.....+..||+..+....+..        ...........    -+|+ +++.+.     ...
T Consensus       165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--------h~~~v~~~~~~----~~~~~~l~s~~-----~d~  227 (383)
T 3ei3_B          165 WYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKL--------HKAKVTHAEFN----PRCDWLMATSS-----VDA  227 (383)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEEC--------SSSCEEEEEEC----SSCTTEEEEEE-----TTS
T ss_pred             CeEEEEECCCCCEEEEECCCCCEEEEECCCCEEEEecc--------CCCcEEEEEEC----CCCCCEEEEEe-----CCC
Confidence            1112222  46666666666689999996554443321        11112222221    4566 666665     236


Q ss_pred             eEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEE--ee-CCEEEEEeecCCeEEEEECCCC
Q 018005          276 TMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WH-QGMICVCCYTWPEILYYNVARR  340 (362)
Q Consensus       276 ~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~v~~yd~~~~  340 (362)
                      .+.+|++..... -..+..+.             ....+.++  .. ++..++.....+.+.+||+++.
T Consensus       228 ~i~iwd~~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~  283 (383)
T 3ei3_B          228 TVKLWDLRNIKDKNSYIAEMP-------------HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDW  283 (383)
T ss_dssp             EEEEEEGGGCCSTTCEEEEEE-------------CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBT
T ss_pred             EEEEEeCCCCCcccceEEEec-------------CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCC
Confidence            899998864321 11111111             11122222  22 3334444545678999998875

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=91.86  E-value=3.2  Score=36.59  Aligned_cols=195  Identities=13%  Similarity=0.114  Sum_probs=85.5

Q ss_pred             CCCeEEEEeCCcCceeeccCC------------CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          119 SSSSFLVCNLVTLSSRTIDFP------------TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~------------~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      .++.+.+||..+++.......            ........+.+.+....  +++.++  ....+.+||..++.-...- 
T Consensus        64 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~--~d~~i~iwd~~~~~~~~~~-  138 (408)
T 4a11_B           64 SDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSS--FDKTLKVWDTNTLQTADVF-  138 (408)
T ss_dssp             TTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEE--TTSEEEEEETTTTEEEEEE-
T ss_pred             CCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCc--EEEEEe--CCCeEEEeeCCCCccceec-
Confidence            356788888887764322110            01111223344332222  232232  3458899998876533222 


Q ss_pred             CCCCccccccCCCcccEEE-----CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCe
Q 018005          187 DGFPSMILSQSSHQEGVFY-----KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK  261 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~-----~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~  261 (362)
                       ..+.       ....+..     ++.+.+.+.....+..||+.+.+.......       ...........    -+|+
T Consensus       139 -~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------~~~~v~~~~~~----~~~~  199 (408)
T 4a11_B          139 -NFEE-------TVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG-------HRQEILAVSWS----PRYD  199 (408)
T ss_dssp             -ECSS-------CEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-------CCSCEEEEEEC----SSCT
T ss_pred             -cCCC-------ceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-------CCCcEEEEEEC----CCCC
Confidence             1111       0011111     344555555555789999876533221101       11111222221    3455


Q ss_pred             -EEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEEC
Q 018005          262 -LYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNV  337 (362)
Q Consensus       262 -L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~  337 (362)
                       +++.+.     ....+.+|++..... ...+..-..................+.++  ..++..++.....+.+.+||+
T Consensus       200 ~ll~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~  274 (408)
T 4a11_B          200 YILATAS-----ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS  274 (408)
T ss_dssp             TEEEEEE-----TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             cEEEEEc-----CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEEC
Confidence             666655     236789998864432 22221100000000000000112223333  223334444445678999999


Q ss_pred             CCCce
Q 018005          338 ARRTW  342 (362)
Q Consensus       338 ~~~~w  342 (362)
                      ++++-
T Consensus       275 ~~~~~  279 (408)
T 4a11_B          275 SNGEN  279 (408)
T ss_dssp             TTCCB
T ss_pred             CCCcc
Confidence            98753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.82  E-value=6.8  Score=35.01  Aligned_cols=196  Identities=11%  Similarity=0.051  Sum_probs=98.0

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeeccCCCC----CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccc
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY----PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD  185 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~----~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~  185 (362)
                      +|.+++.+..++.+.+||+.+++.....+...    ......+++.+.   -++++.++  ....+.+||..+++-...-
T Consensus       133 ~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~~--~d~~v~~~d~~~~~~~~~~  207 (433)
T 3bws_A          133 NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEH---NELWVSQM--QANAVHVFDLKTLAYKATV  207 (433)
T ss_dssp             SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGG---TEEEEEEG--GGTEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCC---CEEEEEEC--CCCEEEEEECCCceEEEEE
Confidence            66666666556789999999998765433211    111122333222   24454443  2358899998775432211


Q ss_pred             cCCCCccccccCCCcccEEE--CC-EEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeE
Q 018005          186 IDGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKL  262 (362)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~--~G-~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L  262 (362)
                          +.    .......+.+  +| .+|+.+.....|.+||+.+.+.... .+       ....  ...+...  -+|+.
T Consensus       208 ----~~----~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~-~~-------~~~~--~~~~~~~--~~g~~  267 (433)
T 3bws_A          208 ----DL----TGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRK-TD-------KIGL--PRGLLLS--KDGKE  267 (433)
T ss_dssp             ----EC----SSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE-CC-------CCSE--EEEEEEC--TTSSE
T ss_pred             ----cC----CCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEE-ec-------CCCC--ceEEEEc--CCCCE
Confidence                00    0011122222  34 4666655556899999987755432 11       1111  1222211  46665


Q ss_pred             EEEEEeecCC---ccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEe-eCCEEEEEeecCCeEEEEECC
Q 018005          263 YLIGGVGRNG---ISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWPEILYYNVA  338 (362)
Q Consensus       263 ~vv~~~~~~~---~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~v~~yd~~  338 (362)
                      .+++......   ....+.+|.+. .++-......+             ....-.++. .++.+++.....+.+.+||++
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~~~~~-------------~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMD-KEKLIDTIGPP-------------GNKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETT-TTEEEEEEEEE-------------ECEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCccccCCCeEEEEECC-CCcEEeeccCC-------------CCcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence            5554432211   13578889774 33211111100             000111222 344677776667789999999


Q ss_pred             CCceEE
Q 018005          339 RRTWHW  344 (362)
Q Consensus       339 ~~~w~~  344 (362)
                      +++-..
T Consensus       334 ~~~~~~  339 (433)
T 3bws_A          334 EKKVQK  339 (433)
T ss_dssp             TTEEEE
T ss_pred             CCcEEE
Confidence            875443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=91.72  E-value=5.2  Score=33.47  Aligned_cols=221  Identities=13%  Similarity=0.081  Sum_probs=111.5

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCc
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG  156 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~  156 (362)
                      .+..+|+. +....+..+..  ......+....+|-+++.....+.+..+|+. ++...+..+........++++..+  
T Consensus        37 ~v~~~d~~-~~~~~~~~~~~--~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g--  110 (299)
T 2z2n_A           37 MISCINLD-GKITEYPLPTP--DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG--  110 (299)
T ss_dssp             EEEEECTT-CCEEEEECSST--TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS--
T ss_pred             cEEEEcCC-CCeEEecCCcc--cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC--
Confidence            46678887 66665543311  1122223334566666654445679999986 555544422111222334444322  


Q ss_pred             eEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCC
Q 018005          157 YKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPND  234 (362)
Q Consensus       157 ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~  234 (362)
                       ++++...  ....+.+||. ++......   .+.    .......+.+  +|.+|+.......+..||+ +++...+. 
T Consensus       111 -~l~v~~~--~~~~i~~~d~-~g~~~~~~---~~~----~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~-  177 (299)
T 2z2n_A          111 -DIWFTEM--NGNRIGRITD-DGKIREYE---LPN----KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFK-  177 (299)
T ss_dssp             -CEEEEET--TTTEEEEECT-TCCEEEEE---CSS----TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEE-
T ss_pred             -CEEEEec--CCceEEEECC-CCCEEEec---CCC----CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEee-
Confidence             3444322  2357888888 55544332   111    0012233444  5888887655567999999 66665432 


Q ss_pred             CCcccccCCCCccc-ccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccE
Q 018005          235 ANDHMTMMLPHELT-FFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHV  313 (362)
Q Consensus       235 p~~~~~~~~p~~~~-~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~  313 (362)
                              .+.... ...+...  .+|.|++...     ....+.+|  +..+....+. ++.       .   .....-
T Consensus       178 --------~~~~~~~~~~i~~~--~~g~l~v~~~-----~~~~i~~~--~~~g~~~~~~-~~~-------~---~~~~~~  229 (299)
T 2z2n_A          178 --------IPTPASGPVGITKG--NDDALWFVEI-----IGNKIGRI--TTSGEITEFK-IPT-------P---NARPHA  229 (299)
T ss_dssp             --------CSSTTCCEEEEEEC--TTSSEEEEET-----TTTEEEEE--CTTCCEEEEE-CSS-------T---TCCEEE
T ss_pred             --------CCCCCCcceeEEEC--CCCCEEEEcc-----CCceEEEE--CCCCcEEEEE-CCC-------C---CCCcee
Confidence                    221111 1233322  5688888764     12445555  5444454331 210       0   001111


Q ss_pred             EEEeeCCEEEEEeecCCeEEEEECCCCceEEc
Q 018005          314 YCFWHQGMICVCCYTWPEILYYNVARRTWHWL  345 (362)
Q Consensus       314 ~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~  345 (362)
                      .++..++.+++.....+.|..||+ +++...+
T Consensus       230 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~  260 (299)
T 2z2n_A          230 ITAGAGIDLWFTEWGANKIGRLTS-NNIIEEY  260 (299)
T ss_dssp             EEECSTTCEEEEETTTTEEEEEET-TTEEEEE
T ss_pred             EEECCCCCEEEeccCCceEEEECC-CCceEEE
Confidence            222334568887655678999998 4555544

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=91.67  E-value=6.9  Score=34.77  Aligned_cols=152  Identities=14%  Similarity=0.102  Sum_probs=73.8

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      +-+|-.++.+..++.+.+||..+++....-.. .......+.+.+.+.  .++ .++  ....+.+||..++.-...-  
T Consensus       132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~--~l~-s~s--~d~~v~iwd~~~~~~~~~~--  203 (393)
T 1erj_A          132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGD--KLV-SGS--GDRTVRIWDLRTGQCSLTL--  203 (393)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSS--EEE-EEE--TTSEEEEEETTTTEEEEEE--
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCC--EEE-Eec--CCCcEEEEECCCCeeEEEE--
Confidence            44553333443467899999998875433211 112223444443321  333 333  3468899999876532221  


Q ss_pred             CCCccccccCCCcccEEE---CCEEEEEecCCcEEEEEEcCCCeeec-CCCCCcccccCCCCcccccceeecccCCCeEE
Q 018005          188 GFPSMILSQSSHQEGVFY---KGSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVNDGEESNKLY  263 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~---~G~ly~~~~~~~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~  263 (362)
                      ...       .....+.+   +|.+.+.++....+..||+.+..... +..+....   ......-..+...  -+|+++
T Consensus       204 ~~~-------~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~---~~h~~~v~~v~~~--~~g~~l  271 (393)
T 1erj_A          204 SIE-------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESG---TGHKDSVYSVVFT--RDGQSV  271 (393)
T ss_dssp             ECS-------SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC---------CCCSSCEEEEEEC--TTSSEE
T ss_pred             EcC-------CCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCC---CCCCCCEEEEEEC--CCCCEE
Confidence            110       11112222   56666666666678999998764322 11110000   0000011122211  467777


Q ss_pred             EEEEeecCCccceEEEEEECC
Q 018005          264 LIGGVGRNGISTTMKLWELGC  284 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~  284 (362)
                      +.+.     ....+.+|++..
T Consensus       272 ~s~s-----~d~~v~~wd~~~  287 (393)
T 1erj_A          272 VSGS-----LDRSVKLWNLQN  287 (393)
T ss_dssp             EEEE-----TTSEEEEEEC--
T ss_pred             EEEe-----CCCEEEEEECCC
Confidence            6665     247899998853

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=91.50  E-value=2  Score=36.37  Aligned_cols=107  Identities=9%  Similarity=-0.001  Sum_probs=64.7

Q ss_pred             EECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC
Q 018005          204 FYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG  283 (362)
Q Consensus       204 ~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~  283 (362)
                      +.++.+|.-++....|.++|+++++-..-..+         .....-.+..   .+++||++..     ....+.|++. 
T Consensus        62 ~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~---------~~~FgeGit~---~g~~Ly~ltw-----~~~~v~V~D~-  123 (268)
T 3nok_A           62 FHQGHFFESTGHQGTLRQLSLESAQPVWMERL---------GNIFAEGLAS---DGERLYQLTW-----TEGLLFTWSG-  123 (268)
T ss_dssp             EETTEEEEEETTTTEEEECCSSCSSCSEEEEC---------TTCCEEEEEE---CSSCEEEEES-----SSCEEEEEET-
T ss_pred             EECCEEEEEcCCCCEEEEEECCCCcEEeEECC---------CCcceeEEEE---eCCEEEEEEc-----cCCEEEEEEC-
Confidence            44788998887665699999998754321122         2212223443   6889999865     2355555533 


Q ss_pred             CCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceE
Q 018005          284 CGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWH  343 (362)
Q Consensus       284 ~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~  343 (362)
                        .+-+.+.+++..            ........+++.+|+.. .++++..+|+++.+-.
T Consensus       124 --~Tl~~~~ti~~~------------~eGwGLt~Dg~~L~vSd-Gs~~l~~iDp~T~~v~  168 (268)
T 3nok_A          124 --MPPQRERTTRYS------------GEGWGLCYWNGKLVRSD-GGTMLTFHEPDGFALV  168 (268)
T ss_dssp             --TTTEEEEEEECS------------SCCCCEEEETTEEEEEC-SSSEEEEECTTTCCEE
T ss_pred             --CcCcEEEEEeCC------------CceeEEecCCCEEEEEC-CCCEEEEEcCCCCeEE
Confidence              234555555421            01222335677888887 4789999999986544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=91.28  E-value=6.2  Score=33.53  Aligned_cols=194  Identities=10%  Similarity=0.090  Sum_probs=91.9

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCcee----eccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSR----TIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK  183 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~----~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~  183 (362)
                      +.+|-+++.+. ++.+.+||..+++..    .+...........+.+.+.+   +.+++++  ....+.+||..++....
T Consensus        60 ~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~d~~i~~~d~~~~~~~~  133 (337)
T 1gxr_A           60 SNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGG--EASTLSIWDLAAPTPRI  133 (337)
T ss_dssp             CSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS---SEEEEEE--SSSEEEEEECCCC--EE
T ss_pred             ecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC---CEEEEEc--CCCcEEEEECCCCCcce
Confidence            34453333333 578999999886522    11111112222334444322   2333333  23589999998876543


Q ss_pred             cccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCe
Q 018005          184 FDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK  261 (362)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~  261 (362)
                      ..  .+..    .......+.+  +|...+.+.....+..||+.+.+.......       ......  .+...  -+|+
T Consensus       134 ~~--~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-------~~~~i~--~~~~~--~~~~  196 (337)
T 1gxr_A          134 KA--ELTS----SAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-------HTDGAS--CIDIS--NDGT  196 (337)
T ss_dssp             EE--EEEC----SSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-------CSSCEE--EEEEC--TTSS
T ss_pred             ee--eccc----CCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-------ccCceE--EEEEC--CCCC
Confidence            32  1111    0011112222  566655665555799999987654332101       111111  22211  4677


Q ss_pred             EEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE--EeeCCEEEEEeecCCeEEEEECCC
Q 018005          262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC--FWHQGMICVCCYTWPEILYYNVAR  339 (362)
Q Consensus       262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~v~~yd~~~  339 (362)
                      +++++.     ....+.+|++.....   +..+..             ...+.+  +..++..++.....+.+.+||+++
T Consensus       197 ~l~~~~-----~dg~i~~~d~~~~~~---~~~~~~-------------~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~  255 (337)
T 1gxr_A          197 KLWTGG-----LDNTVRSWDLREGRQ---LQQHDF-------------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEEEEE-----TTSEEEEEETTTTEE---EEEEEC-------------SSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             EEEEEe-----cCCcEEEEECCCCce---EeeecC-------------CCceEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence            777665     236789997753221   111110             011122  222333344444566788999888


Q ss_pred             CceEEc
Q 018005          340 RTWHWL  345 (362)
Q Consensus       340 ~~w~~~  345 (362)
                      ++-..+
T Consensus       256 ~~~~~~  261 (337)
T 1gxr_A          256 PDKYQL  261 (337)
T ss_dssp             SCEEEE
T ss_pred             CCeEEE
Confidence            765544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=91.09  E-value=3.2  Score=35.21  Aligned_cols=144  Identities=9%  Similarity=0.038  Sum_probs=70.9

Q ss_pred             EEEEEeeecCCCeEEEEeCCCCc--ccccccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCC-CeeecCCC
Q 018005          158 KIFMLFAKSFPNYAFVYDSTDQS--WSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLEN-GIWETPND  234 (362)
Q Consensus       158 kv~~~~~~~~~~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~-~~w~~~~~  234 (362)
                      ++++.+.  ....+.++|.++++  |+...  .-..     ......+.-+|.+++ .. ...+.+||+.. ..|+. ..
T Consensus         6 ~~lv~~~--~~~~v~~~d~~tG~~~w~~~~--~~~~-----~~~~~~~~pdG~ilv-s~-~~~V~~~d~~G~~~W~~-~~   73 (276)
T 3no2_A            6 HLLVGGS--GWNKIAIINKDTKEIVWEYPL--EKGW-----ECNSVAATKAGEILF-SY-SKGAKMITRDGRELWNI-AA   73 (276)
T ss_dssp             EEEEECT--TCSEEEEEETTTTEEEEEEEC--CTTC-----CCCEEEECTTSCEEE-EC-BSEEEEECTTSCEEEEE-EC
T ss_pred             cEEEeeC--CCCEEEEEECCCCeEEEEeCC--CccC-----CCcCeEECCCCCEEE-eC-CCCEEEECCCCCEEEEE-cC
Confidence            5555543  34688899987764  77654  1100     011111222788877 33 34799999943 35654 21


Q ss_pred             CCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC--EEEEecccHHHHHHhhhccccCCcc
Q 018005          235 ANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDH  312 (362)
Q Consensus       235 p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~  312 (362)
                      +       ..........+    .+|++++....      ..-.++.++.+++  |+.-..-  .......     ....
T Consensus        74 ~-------~~~~~~~~~~~----~dG~~lv~~~~------~~~~v~~vd~~Gk~l~~~~~~~--~~~~~~~-----~~~~  129 (276)
T 3no2_A           74 P-------AGCEMQTARIL----PDGNALVAWCG------HPSTILEVNMKGEVLSKTEFET--GIERPHA-----QFRQ  129 (276)
T ss_dssp             C-------TTCEEEEEEEC----TTSCEEEEEES------TTEEEEEECTTSCEEEEEEECC--SCSSGGG-----SCSC
T ss_pred             C-------CCccccccEEC----CCCCEEEEecC------CCCEEEEEeCCCCEEEEEeccC--CCCcccc-----cccC
Confidence            2       11111112222    68888887651      1346677777766  6543211  0000000     0011


Q ss_pred             EEEEeeCCEEEEEeecCCeEEEEECC
Q 018005          313 VYCFWHQGMICVCCYTWPEILYYNVA  338 (362)
Q Consensus       313 ~~~~~~~~~i~~~~~~~~~v~~yd~~  338 (362)
                      + ....++.+++.....+.|.+||++
T Consensus       130 v-~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A          130 I-NKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             C-EECTTSCEEEEETTTTEEEEECTT
T ss_pred             c-eECCCCCEEEEecCCCEEEEECCC
Confidence            1 222333345555556789999988

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=90.99  E-value=6.1  Score=32.89  Aligned_cols=192  Identities=14%  Similarity=-0.001  Sum_probs=100.2

Q ss_pred             ecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       107 ~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      ...+|.|++.....+.+.++++.++.-..+-.... ..-.+++++..+  -.+++...  ....+.+++.....-+... 
T Consensus        44 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~-~~p~~ia~d~~~--~~lyv~d~--~~~~I~~~~~~g~~~~~~~-  117 (267)
T 1npe_A           44 DCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDL-GSPEGIALDHLG--RTIFWTDS--QLDRIEVAKMDGTQRRVLF-  117 (267)
T ss_dssp             ETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTC-CCEEEEEEETTT--TEEEEEET--TTTEEEEEETTSCSCEEEE-
T ss_pred             ecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCC-CCccEEEEEecC--CeEEEEEC--CCCEEEEEEcCCCCEEEEE-
Confidence            33467777776556789999998765433322111 122345555322  25565443  3457888888643322221 


Q ss_pred             CCCCccccccCCCcccEEE---CCEEEEEecC--CcEEEEEEcCCCeeecCC-CCCcccccCCCCcccccceeecccCCC
Q 018005          187 DGFPSMILSQSSHQEGVFY---KGSLYFTTPE--PFSIVRFDLENGIWETPN-DANDHMTMMLPHELTFFRLVNDGEESN  260 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~---~G~ly~~~~~--~~~i~~~D~~~~~w~~~~-~p~~~~~~~~p~~~~~~~lv~~~~~~G  260 (362)
                         +. ..   ....++.+   +|.+||....  ...|.+++++...-..+. ...     ..|.     .+... .-++
T Consensus       118 ---~~-~~---~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~-----~~P~-----gia~d-~~~~  179 (267)
T 1npe_A          118 ---DT-GL---VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNL-----GLPN-----GLTFD-AFSS  179 (267)
T ss_dssp             ---CS-SC---SSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTC-----SCEE-----EEEEE-TTTT
T ss_pred             ---EC-CC---CCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCC-----CCCc-----EEEEc-CCCC
Confidence               00 00   12234444   5899998754  357888988754332221 110     0122     23311 0257


Q ss_pred             eEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCC
Q 018005          261 KLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVAR  339 (362)
Q Consensus       261 ~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~  339 (362)
                      .||+...     ....|.++.++  +. -..+..-        .     . .+......++.+|+.....+.|..+|+++
T Consensus       180 ~lyv~d~-----~~~~I~~~~~~--g~~~~~~~~~--------~-----~-~P~gi~~d~~~lyva~~~~~~v~~~d~~~  238 (267)
T 1npe_A          180 QLCWVDA-----GTHRAECLNPA--QPGRRKVLEG--------L-----Q-YPFAVTSYGKNLYYTDWKTNSVIAMDLAI  238 (267)
T ss_dssp             EEEEEET-----TTTEEEEEETT--EEEEEEEEEC--------C-----C-SEEEEEEETTEEEEEETTTTEEEEEETTT
T ss_pred             EEEEEEC-----CCCEEEEEecC--CCceEEEecC--------C-----C-CceEEEEeCCEEEEEECCCCeEEEEeCCC
Confidence            8888865     23566666543  32 1111100        0     0 11222234788999887778999999998


Q ss_pred             CceE
Q 018005          340 RTWH  343 (362)
Q Consensus       340 ~~w~  343 (362)
                      ++..
T Consensus       239 g~~~  242 (267)
T 1npe_A          239 SKEM  242 (267)
T ss_dssp             TEEE
T ss_pred             CCce
Confidence            7644

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=90.58  E-value=13  Score=36.38  Aligned_cols=199  Identities=13%  Similarity=-0.016  Sum_probs=96.2

Q ss_pred             EecCCceEEEecCCCCeEEEEeCCc----CceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcc
Q 018005          106 LSSSKGLLCFSLPSSSSFLVCNLVT----LSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSW  181 (362)
Q Consensus       106 ~~s~~Gll~~~~~~~~~~~v~NP~t----~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W  181 (362)
                      +...+|.|++.......++++++.+    .....+-.... ..-.+++++...  -+|++...  ....+.+++.....=
T Consensus       413 ~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~-~~P~glavD~~~--g~LY~tD~--~~~~I~v~d~dg~~~  487 (699)
T 1n7d_A          413 TEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI-QAPDGLAVDWIH--SNIYWTDS--VLGTVSVADTKGVKR  487 (699)
T ss_dssp             EETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC---CCCEECCCSS--SBCEECCT--TTSCEEEEBSSSCCE
T ss_pred             cccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCC-CCcceEEEEeeC--CcEEEEec--cCCeEEEEecCCCce
Confidence            3445677877765556788888875    12111111000 011234443221  14444321  234678888765432


Q ss_pred             cccccCCCCccccccCCCcccEEE---CCEEEEEecCC-cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeeccc
Q 018005          182 SKFDIDGFPSMILSQSSHQEGVFY---KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGE  257 (362)
Q Consensus       182 ~~~~~~~~p~~~~~~~~~~~~v~~---~G~ly~~~~~~-~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~  257 (362)
                      +...  ..   .+   ....++.+   +|.|||..... ..|.++++....-..+....  +  ..|.     .|... -
T Consensus       488 ~~l~--~~---~~---~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~--l--~~Pn-----Glavd-~  549 (699)
T 1n7d_A          488 KTLF--RE---QG---SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN--I--QWPN-----GITLD-L  549 (699)
T ss_dssp             EEEC--CC---SS---CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSS--C--SSCC-----CEEEC-T
T ss_pred             EEEE--eC---CC---CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCC--C--CCcc-----EEEEe-c
Confidence            2221  10   01   12345555   58999987433 57888887643222211000  0  0232     23321 0


Q ss_pred             CCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEEC
Q 018005          258 ESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNV  337 (362)
Q Consensus       258 ~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~  337 (362)
                      .+++||++..     ....|.++.++. ..-+.+...+.     .+    .  .+......++.||+.....+.|..+|+
T Consensus       550 ~~~~LY~aD~-----~~~~I~~~d~dG-~~~~~~~~~~~-----~~----~--~P~glavd~~~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          550 LSGRLYWVDS-----KLHSISSIDVNG-GNRKTILEDEK-----RL----A--HPFSLAVFEDKVFWTDIINEAIFSANR  612 (699)
T ss_dssp             TTCCEEEEET-----TTTEEEEECSSS-SCCEEECCCSS-----SC----S--SCCCCEEETTEEEEECSTTTCEEEEET
T ss_pred             cCCEEEEEec-----CCCeEEEEccCC-CceEEEEecCC-----cC----C--CceEeEEECCEEEEEeCCCCeEEEEEc
Confidence            3588999875     345666665532 22222222110     00    0  111112245688988877778999999


Q ss_pred             CCCceEE
Q 018005          338 ARRTWHW  344 (362)
Q Consensus       338 ~~~~w~~  344 (362)
                      .+++-..
T Consensus       613 ~~G~~~~  619 (699)
T 1n7d_A          613 LTGSDVN  619 (699)
T ss_dssp             TTEEEEE
T ss_pred             cCCCceE
Confidence            8775544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=90.56  E-value=8.1  Score=33.58  Aligned_cols=160  Identities=12%  Similarity=0.138  Sum_probs=78.2

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCC--CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFP--TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~--~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      -+|-+++.+..++.+.+||..++++......  ........+++.+.+   +.++.++  ....+.+|+..++.+.... 
T Consensus        26 p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g---~~l~s~s--~D~~v~iw~~~~~~~~~~~-   99 (345)
T 3fm0_A           26 PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG---NYLASAS--FDATTCIWKKNQDDFECVT-   99 (345)
T ss_dssp             TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTS---SEEEEEE--TTSCEEEEEECCC-EEEEE-
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCC---CEEEEEE--CCCcEEEEEccCCCeEEEE-
Confidence            3443333333457889999988876533221  122223344554432   2333333  3457888888777664433 


Q ss_pred             CCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCC-eeecCCCCCcccccCCCCcccccceeecccCCCeEE
Q 018005          187 DGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENG-IWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY  263 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~-~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~  263 (362)
                       .+..    ....-..+.+  +|...+.++....+..+|+.++ ....+.....     .....  ..+...  -+|+++
T Consensus       100 -~~~~----h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-----h~~~v--~~~~~~--p~~~~l  165 (345)
T 3fm0_A          100 -TLEG----HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-----HTQDV--KHVVWH--PSQELL  165 (345)
T ss_dssp             -EECC----CSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-----CCSCE--EEEEEC--SSSSCE
T ss_pred             -EccC----CCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-----cCCCe--EEEEEC--CCCCEE
Confidence             1111    0011122333  4666666665567889998754 2222110000     11111  122211  467766


Q ss_pred             EEEEeecCCccceEEEEEECCCCCEEEEecc
Q 018005          264 LIGGVGRNGISTTMKLWELGCGGNWIEVERV  294 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~  294 (362)
                      +.+.     ....+.+|+++ .+.|..+..+
T Consensus       166 ~s~s-----~d~~i~~w~~~-~~~~~~~~~~  190 (345)
T 3fm0_A          166 ASAS-----YDDTVKLYREE-EDDWVCCATL  190 (345)
T ss_dssp             EEEE-----TTSCEEEEEEE-TTEEEEEEEE
T ss_pred             EEEe-----CCCcEEEEEec-CCCEEEEEEe
Confidence            6665     23678999884 4457655544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=90.55  E-value=5.3  Score=34.77  Aligned_cols=152  Identities=9%  Similarity=0.082  Sum_probs=76.6

Q ss_pred             EEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCC-C
Q 018005          159 IFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPND-A  235 (362)
Q Consensus       159 v~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~-p  235 (362)
                      +++.++  ....+.+|+..++.|....  .... ..  ...-..+.+  +|...+.++....+..+|..++.+..+.. .
T Consensus        30 ~las~~--~D~~i~iw~~~~~~~~~~~--~~~~-~h--~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  102 (345)
T 3fm0_A           30 LLASCG--GDRRIRIWGTEGDSWICKS--VLSE-GH--QRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE  102 (345)
T ss_dssp             CEEEEE--TTSCEEEEEEETTEEEEEE--EECS-SC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC
T ss_pred             EEEEEc--CCCeEEEEEcCCCcceeee--eecc-cc--CCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc
Confidence            344444  3457889999888775332  1100 00  011122333  46665556555578889988765543210 0


Q ss_pred             CcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE
Q 018005          236 NDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC  315 (362)
Q Consensus       236 ~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~  315 (362)
                      .      ......  .+...  -+|++++.+.     ...++.+|+++....+..+..+.            .+...+.+
T Consensus       103 ~------h~~~v~--~v~~s--p~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~------------~h~~~v~~  155 (345)
T 3fm0_A          103 G------HENEVK--SVAWA--PSGNLLATCS-----RDKSVWVWEVDEEDEYECVSVLN------------SHTQDVKH  155 (345)
T ss_dssp             C------CSSCEE--EEEEC--TTSSEEEEEE-----TTSCEEEEEECTTSCEEEEEEEC------------CCCSCEEE
T ss_pred             C------CCCCce--EEEEe--CCCCEEEEEE-----CCCeEEEEECCCCCCeEEEEEec------------CcCCCeEE
Confidence            0      111111  22211  4677777765     23789999997555565554431            01112222


Q ss_pred             E--eeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          316 F--WHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       316 ~--~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                      +  ..++.+++.....+.+.+||.++++|..
T Consensus       156 ~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~  186 (345)
T 3fm0_A          156 VVWHPSQELLASASYDDTVKLYREEEDDWVC  186 (345)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEEEETTEEEE
T ss_pred             EEECCCCCEEEEEeCCCcEEEEEecCCCEEE
Confidence            2  2223334444455678888888776653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=90.15  E-value=10  Score=34.14  Aligned_cols=109  Identities=6%  Similarity=-0.045  Sum_probs=57.1

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeeccC-CCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCC
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDF-PTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG  188 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~-~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~  188 (362)
                      ++-+++.+..++.+.|||..+++...+-. ........++.+.+.... .++. ++  ....+.+||.+++.-+...  .
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~-~l~s-~s--~D~~v~iwd~~~~~~~~~~--~  204 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTN-QFYA-SS--MEGTTRLQDFKGNILRVFA--S  204 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTT-EEEE-EC--SSSCEEEEETTSCEEEEEE--C
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCC-EEEE-Ee--CCCEEEEeeccCCceeEEe--c
Confidence            44233334346789999999887543322 222233345555432222 3333 32  3457889998876554433  1


Q ss_pred             CCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCe
Q 018005          189 FPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI  228 (362)
Q Consensus       189 ~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~  228 (362)
                      ...  .  ......+.+  +|.+.+.+.....|..+|+..+.
T Consensus       205 ~~~--~--~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          205 SDT--I--NIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             CSS--C--SCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred             cCC--C--CccEEEEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence            111  0  011122222  56666666665678999987654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=90.11  E-value=8.4  Score=33.06  Aligned_cols=98  Identities=6%  Similarity=-0.090  Sum_probs=48.5

Q ss_pred             CCCeEEEEeCCcCc--eeeccCCCC--CCccceEEEEe-CCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccc
Q 018005          119 SSSSFLVCNLVTLS--SRTIDFPTY--PFDFELLTLVS-TPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMI  193 (362)
Q Consensus       119 ~~~~~~v~NP~t~~--w~~lP~~~~--~~~~~~~~~~~-~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~  193 (362)
                      .++.+.+||..+++  ...+.....  ......+++.. -......++.++  ....+.+||..++.=....  ...   
T Consensus       137 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~--~~~---  209 (357)
T 3i2n_A          137 RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY--DNGDIKLFDLRNMALRWET--NIK---  209 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE--TTSEEEEEETTTTEEEEEE--ECS---
T ss_pred             CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc--cCCeEEEEECccCceeeec--CCC---
Confidence            45789999998876  333332221  11222333221 111223344443  3458999999876532211  111   


Q ss_pred             cccCCCcccEEE-----CCEEEEEecCCcEEEEEEcCCC
Q 018005          194 LSQSSHQEGVFY-----KGSLYFTTPEPFSIVRFDLENG  227 (362)
Q Consensus       194 ~~~~~~~~~v~~-----~G~ly~~~~~~~~i~~~D~~~~  227 (362)
                          .....+.+     +|...+.+.....+..||+.+.
T Consensus       210 ----~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          210 ----NGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             ----SCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             ----CceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence                11122222     4566666665567888988754

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=89.81  E-value=8.6  Score=32.75  Aligned_cols=186  Identities=14%  Similarity=0.090  Sum_probs=83.2

Q ss_pred             CCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCC
Q 018005          120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSH  199 (362)
Q Consensus       120 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~  199 (362)
                      ++.+.+||.....-..............+.+...... .+++.++  ....+.+||..++.-...-. +..       ..
T Consensus       149 d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~s~~--~d~~i~i~d~~~~~~~~~~~-~h~-------~~  217 (340)
T 4aow_A          149 DKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN-PIIVSCG--WDKLVKVWNLANCKLKTNHI-GHT-------GY  217 (340)
T ss_dssp             TSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS-CEEEEEE--TTSCEEEEETTTTEEEEEEC-CCS-------SC
T ss_pred             CCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC-cEEEEEc--CCCEEEEEECCCCceeeEec-CCC-------Cc
Confidence            4677888876665443332222222223333332222 3333333  33578899987764322210 100       11


Q ss_pred             cccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005          200 QEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM  277 (362)
Q Consensus       200 ~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i  277 (362)
                      -..+.+  +|.+.+.++....+..||+.+.+-.... .       ....  -..+..   ..+..+++++.     ...+
T Consensus       218 v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~-~-------~~~~--v~~~~~---~~~~~~~~~~~-----d~~i  279 (340)
T 4aow_A          218 LNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL-D-------GGDI--INALCF---SPNRYWLCAAT-----GPSI  279 (340)
T ss_dssp             EEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE-E-------CSSC--EEEEEE---CSSSSEEEEEE-----TTEE
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee-c-------CCce--EEeeec---CCCCceeeccC-----CCEE
Confidence            122333  4666666666568899999875432211 1       1111  112221   23333344432     2678


Q ss_pred             EEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCc
Q 018005          278 KLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       278 ~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      .+|+++.... +..-....    .....   .....+.++  ..++..++.+...+.|.+||+++++
T Consensus       280 ~iwd~~~~~~~~~~~~~~~----~~~~~---~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          280 KIWDLEGKIIVDELKQEVI----STSSK---AEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEETTTTEEEEEECCC--------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEEECCCCeEEEeccccce----eeecc---CCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            9997742221 22111110    00000   111223333  3344445555566789999999874

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=89.10  E-value=9.9  Score=32.45  Aligned_cols=199  Identities=8%  Similarity=-0.080  Sum_probs=96.8

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG  188 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~  188 (362)
                      .+|-|++.......++.+||.++.-..+...   ....+++++..+   ++++.........+..|+..+++.+...  .
T Consensus        41 ~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~---~~p~gia~~~dG---~l~vad~~~~~~~v~~~d~~~g~~~~~~--~  112 (306)
T 2p4o_A           41 PDGTIFVTNHEVGEIVSITPDGNQQIHATVE---GKVSGLAFTSNG---DLVATGWNADSIPVVSLVKSDGTVETLL--T  112 (306)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCCEEEEEECS---SEEEEEEECTTS---CEEEEEECTTSCEEEEEECTTSCEEEEE--E
T ss_pred             CCCCEEEEeCCCCeEEEECCCCceEEEEeCC---CCceeEEEcCCC---cEEEEeccCCcceEEEEcCCCCeEEEEE--e
Confidence            3565666554457888899887643333221   122344444332   3555443222335778888887766544  2


Q ss_pred             CCccccccCCCcccEE--ECCEEEEEecCCcEEEEEEcCCCeeecC-CCCCcccccCCCCcc-cccceeecccCCCeEEE
Q 018005          189 FPSMILSQSSHQEGVF--YKGSLYFTTPEPFSIVRFDLENGIWETP-NDANDHMTMMLPHEL-TFFRLVNDGEESNKLYL  264 (362)
Q Consensus       189 ~p~~~~~~~~~~~~v~--~~G~ly~~~~~~~~i~~~D~~~~~w~~~-~~p~~~~~~~~p~~~-~~~~lv~~~~~~G~L~v  264 (362)
                      .+.    . ...+++.  .++.+|+.......+..+|+.+..-+.. ..+. .......... ....+. .  -++.||+
T Consensus       113 ~~~----~-~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~-~~~~~~~~~~~~pngis-~--dg~~lyv  183 (306)
T 2p4o_A          113 LPD----A-IFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPM-LARSNSESVFPAANGLK-R--FGNFLYV  183 (306)
T ss_dssp             CTT----C-SCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGG-GSCSSTTCCSCSEEEEE-E--ETTEEEE
T ss_pred             CCC----c-cccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCc-cccccccCCCCcCCCcC-c--CCCEEEE
Confidence            222    0 1112222  2456777665445789999876422110 0000 0000000111 112232 1  3456887


Q ss_pred             EEEeecCCccceEEEEEECCCCC---EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCc
Q 018005          265 IGGVGRNGISTTMKLWELGCGGN---WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       265 v~~~~~~~~~~~i~vw~l~~~~~---W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      ...     ....+.++.++..+.   .......              ....-.++..++.+|+.....+.|..||++ ++
T Consensus       184 ~d~-----~~~~I~~~~~~~~g~~~~~~~~~~~--------------~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~  243 (306)
T 2p4o_A          184 SNT-----EKMLLLRIPVDSTDKPGEPEIFVEQ--------------TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS  243 (306)
T ss_dssp             EET-----TTTEEEEEEBCTTSCBCCCEEEEES--------------CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC
T ss_pred             EeC-----CCCEEEEEEeCCCCCCCccEEEecc--------------CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC
Confidence            764     346777777754232   2212111              001112344455678887767789999986 55


Q ss_pred             eEE
Q 018005          342 WHW  344 (362)
Q Consensus       342 w~~  344 (362)
                      ...
T Consensus       244 ~~~  246 (306)
T 2p4o_A          244 TTI  246 (306)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=88.94  E-value=12  Score=33.16  Aligned_cols=206  Identities=12%  Similarity=0.065  Sum_probs=98.8

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeecc-----CC-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccc
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTID-----FP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSK  183 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP-----~~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~  183 (362)
                      +|-+++.+..++.+.+||..+++...-.     .. ........+.+.+.+.  .+++.++  ....+.+||..++.-..
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~l~s~~--~dg~i~iwd~~~~~~~~  168 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQ--NVLLSAG--CDNVILVWDVGTGAAVL  168 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBT--TEEEEEE--TTSCEEEEETTTTEEEE
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCC--CEEEEEc--CCCEEEEEECCCCCccE
Confidence            4533333434688999999887532110     00 0111222344433321  1333333  34578999998765422


Q ss_pred             cccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCe
Q 018005          184 FDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK  261 (362)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~  261 (362)
                      .-  ....  .  ......+.+  +|...+.+.....+..||+.+.+-......       ...+.....+...  -+|+
T Consensus       169 ~~--~~~~--~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-------~~~~~~~~~~~~~--~~~~  233 (402)
T 2aq5_A          169 TL--GPDV--H--PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDR-------PHEGTRPVHAVFV--SEGK  233 (402)
T ss_dssp             EE--CTTT--C--CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-------SSCSSSCCEEEEC--STTE
T ss_pred             EE--ecCC--C--CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeecc-------CCCCCcceEEEEc--CCCc
Confidence            11  0000  0  011122333  566666666666899999987654321101       1111111222212  5788


Q ss_pred             EEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeecCCeEEEEECCCC
Q 018005          262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARR  340 (362)
Q Consensus       262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~~~  340 (362)
                      +++++...  .....+.+|++.....=.....++.           .......++ ..++.+++.+...+.|.+||++++
T Consensus       234 ~l~~g~~~--~~d~~i~iwd~~~~~~~~~~~~~~~-----------~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~  300 (402)
T 2aq5_A          234 ILTTGFSR--MSERQVALWDTKHLEEPLSLQELDT-----------SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE  300 (402)
T ss_dssp             EEEEEECT--TCCEEEEEEETTBCSSCSEEEECCC-----------CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred             EEEEeccC--CCCceEEEEcCccccCCceEEeccC-----------CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence            77776311  2347899998854332111111110           000111122 234566666655678999999987


Q ss_pred             c--eEEcCC
Q 018005          341 T--WHWLPS  347 (362)
Q Consensus       341 ~--w~~~~~  347 (362)
                      +  ...+..
T Consensus       301 ~~~~~~l~~  309 (402)
T 2aq5_A          301 APFLHYLSM  309 (402)
T ss_dssp             TTCEEEEEE
T ss_pred             CcceEeecc
Confidence            6  555543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=88.91  E-value=9.8  Score=32.16  Aligned_cols=200  Identities=9%  Similarity=0.120  Sum_probs=93.0

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCC-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      .+|-.++.+..++.+.+||..++....+-.+ ........+.+.+.. .-++++.++  ....+.+||..++.|....  
T Consensus        19 ~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s--~D~~v~iWd~~~~~~~~~~--   93 (297)
T 2pm7_B           19 YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCS--YDGKVMIWKEENGRWSQIA--   93 (297)
T ss_dssp             TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEE--TTTEEEEEEBSSSCBCCCE--
T ss_pred             CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEc--CCCEEEEEEcCCCceEEEE--
Confidence            3443333333457788998865432221111 111122234443211 113344443  3468999999988876543  


Q ss_pred             CCCccccccCCCcccEEEC----CEEEEEecCCcEEEEEEcCCCe-eecCCCCCcccccCCCCcccccceeec-------
Q 018005          188 GFPSMILSQSSHQEGVFYK----GSLYFTTPEPFSIVRFDLENGI-WETPNDANDHMTMMLPHELTFFRLVND-------  255 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~~----G~ly~~~~~~~~i~~~D~~~~~-w~~~~~p~~~~~~~~p~~~~~~~lv~~-------  255 (362)
                      .+..    ....-..+.+.    |.+.+.+.....+..+|+.+.. +.......      .............       
T Consensus        94 ~~~~----h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~~~~~  163 (297)
T 2pm7_B           94 VHAV----HSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA------HAIGVNSASWAPATIEEDGE  163 (297)
T ss_dssp             EECC----CSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC------CSSCEEEEEECCCC------
T ss_pred             Eeec----CCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec------ccCccceEeecCCccccccc
Confidence            1111    00112233332    5555556555678889987642 21110000      1111111000000       


Q ss_pred             --ccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEE-ee-C---CEEEEEee
Q 018005          256 --GEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCF-WH-Q---GMICVCCY  327 (362)
Q Consensus       256 --~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~-~---~~i~~~~~  327 (362)
                        +..++++++.++     ...++.+|+++.... |.....+.            ++...+.++ .. +   +..++...
T Consensus       164 ~~~~~~~~~l~sgs-----~D~~v~lwd~~~~~~~~~~~~~l~------------~H~~~V~~v~~sp~~~~~~~las~s  226 (297)
T 2pm7_B          164 HNGTKESRKFVTGG-----ADNLVKIWKYNSDAQTYVLESTLE------------GHSDWVRDVAWSPTVLLRSYMASVS  226 (297)
T ss_dssp             ------CCEEEEEE-----TTSCEEEEEEETTTTEEEEEEEEC------------CCSSCEEEEEECCCCSSSEEEEEEE
T ss_pred             CCCCCCcceEEEEc-----CCCcEEEEEEcCCCceEEEEEEec------------CCCCceEEEEECCCCCCceEEEEEE
Confidence              001245666655     237899999965544 76665542            111223333 11 2   34555555


Q ss_pred             cCCeEEEEECCCC
Q 018005          328 TWPEILYYNVARR  340 (362)
Q Consensus       328 ~~~~v~~yd~~~~  340 (362)
                      ..+.+.+||+++.
T Consensus       227 ~D~~v~iWd~~~~  239 (297)
T 2pm7_B          227 QDRTCIIWTQDNE  239 (297)
T ss_dssp             TTSCEEEEEESST
T ss_pred             CCCcEEEEEeCCC
Confidence            6678999998764

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=88.88  E-value=19  Score=35.32  Aligned_cols=138  Identities=11%  Similarity=0.064  Sum_probs=68.4

Q ss_pred             CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCC
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS  198 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~  198 (362)
                      .++.+.+||..+++....-.. ......++.+.+.+   +.+++++  ....+.+|+..++.....-. ...       .
T Consensus        33 ~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~---~~l~~~~--~dg~i~vw~~~~~~~~~~~~-~~~-------~   98 (814)
T 3mkq_A           33 YSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARK---NWIIVGS--DDFRIRVFNYNTGEKVVDFE-AHP-------D   98 (814)
T ss_dssp             TTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGG---TEEEEEE--TTSEEEEEETTTCCEEEEEE-CCS-------S
T ss_pred             CCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCC---CEEEEEe--CCCeEEEEECCCCcEEEEEe-cCC-------C
Confidence            356788999888775432111 11223344555432   2333343  24689999988776432210 111       1


Q ss_pred             CcccEEE--CCEEEEEecCCcEEEEEEcCCC-eeecCCCCCcccccCCCCcccccceeecccC-CCeEEEEEEeecCCcc
Q 018005          199 HQEGVFY--KGSLYFTTPEPFSIVRFDLENG-IWETPNDANDHMTMMLPHELTFFRLVNDGEE-SNKLYLIGGVGRNGIS  274 (362)
Q Consensus       199 ~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~-~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~-~G~L~vv~~~~~~~~~  274 (362)
                      .-..+.+  +|...+.+.....+..||..++ ........       ...........    - +|.+++++.     ..
T Consensus        99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------~~~~v~~~~~~----p~~~~~l~~~~-----~d  162 (814)
T 3mkq_A           99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-------HEHFVMCVAFN----PKDPSTFASGC-----LD  162 (814)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-------CSSCEEEEEEE----TTEEEEEEEEE-----TT
T ss_pred             CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-------CCCcEEEEEEE----cCCCCEEEEEe-----CC
Confidence            1112222  4554445555558999998765 33221101       11111111111    2 566666665     23


Q ss_pred             ceEEEEEECCCC
Q 018005          275 TTMKLWELGCGG  286 (362)
Q Consensus       275 ~~i~vw~l~~~~  286 (362)
                      ..+.+|.++...
T Consensus       163 g~v~vwd~~~~~  174 (814)
T 3mkq_A          163 RTVKVWSLGQST  174 (814)
T ss_dssp             SEEEEEETTCSS
T ss_pred             CeEEEEECCCCc
Confidence            689999885433

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=88.24  E-value=12  Score=32.33  Aligned_cols=155  Identities=12%  Similarity=0.135  Sum_probs=79.7

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCC
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGF  189 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~  189 (362)
                      +|-.++.+..++.+.+||..+++....-..........+++.+.+   ++++.++  ....+.+||..++.-....   +
T Consensus       138 ~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg---~~lasg~--~dg~i~iwd~~~~~~~~~~---~  209 (343)
T 3lrv_A          138 NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDS---LLLALYS--PDGILDVYNLSSPDQASSR---F  209 (343)
T ss_dssp             -CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTS---CEEEEEC--TTSCEEEEESSCTTSCCEE---C
T ss_pred             CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCC---CEEEEEc--CCCEEEEEECCCCCCCccE---E
Confidence            343333333467899999999887554333222223345554432   4455544  3468999999876432111   0


Q ss_pred             CccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCee-ecCCCCCcccccCCCCc-cc--ccceeecccCCCeEE
Q 018005          190 PSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIW-ETPNDANDHMTMMLPHE-LT--FFRLVNDGEESNKLY  263 (362)
Q Consensus       190 p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w-~~~~~p~~~~~~~~p~~-~~--~~~lv~~~~~~G~L~  263 (362)
                      ..   .....-..+.+  +|...+.+... .+..+|+.+.+- ..+. +       +... ..  ...+...  -+|+++
T Consensus       210 ~~---~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~--~~g~~l  275 (343)
T 3lrv_A          210 PV---DEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYP-T-------YTIPEFKTGTVTYDID--DSGKNM  275 (343)
T ss_dssp             CC---CTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSC-C-------CBC-----CCEEEEEC--TTSSEE
T ss_pred             ec---cCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeec-c-------cccccccccceEEEEC--CCCCEE
Confidence            00   00011122333  46555555544 899999986532 1111 1       1000 00  0113212  578877


Q ss_pred             EEEEeecCCccceEEEEEECCCCC-EEE
Q 018005          264 LIGGVGRNGISTTMKLWELGCGGN-WIE  290 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~~~~-W~~  290 (362)
                      +++..    ....+.||.++.... |..
T Consensus       276 ~~~s~----~d~~i~v~~~~~~~~~~~~  299 (343)
T 3lrv_A          276 IAYSN----ESNSLTIYKFDKKTKNWTK  299 (343)
T ss_dssp             EEEET----TTTEEEEEEECTTTCSEEE
T ss_pred             EEecC----CCCcEEEEEEcccccceEe
Confidence            77651    246899999976554 997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=87.90  E-value=12  Score=32.08  Aligned_cols=187  Identities=11%  Similarity=0.056  Sum_probs=91.8

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceee-ccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRT-IDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~-lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      .++-+++.+..++.+.+||..+++... +...+  .....+++.+.+   +.++.++  ....+.+|+..++.=...-  
T Consensus        90 ~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~--~~~~~~~~spdg---~~l~~g~--~dg~v~i~~~~~~~~~~~~--  160 (321)
T 3ow8_A           90 HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGP--VDAWTLAFSPDS---QYLATGT--HVGKVNIFGVESGKKEYSL--  160 (321)
T ss_dssp             SSSSEEEEEETTSEEEEEETTTTEEEEEEECCT--TCCCCEEECTTS---SEEEEEC--TTSEEEEEETTTCSEEEEE--
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCC--ccEEEEEECCCC---CEEEEEc--CCCcEEEEEcCCCceeEEe--
Confidence            344444444456889999999887533 22111  112234454332   2333333  3457889988765421111  


Q ss_pred             CCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEE
Q 018005          188 GFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLI  265 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv  265 (362)
                        ..   .. .....+.+  +|...+.+.....+..||+.+.+-......       ......  .+...  -+|++++.
T Consensus       161 --~~---~~-~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~--~l~~s--pd~~~l~s  223 (321)
T 3ow8_A          161 --DT---RG-KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-------HAMPIR--SLTFS--PDSQLLVT  223 (321)
T ss_dssp             --EC---SS-SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-------CSSCCC--EEEEC--TTSCEEEE
T ss_pred             --cC---CC-ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-------cCCcee--EEEEc--CCCCEEEE
Confidence              00   00 01112222  566666666556789999987654321101       111111  22211  47777766


Q ss_pred             EEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCc
Q 018005          266 GGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       266 ~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      +.     ....+.+|++.. ..-  +..+.            +....+.++  ..++..++.....+.+.+||+++++
T Consensus       224 ~s-----~dg~i~iwd~~~-~~~--~~~~~------------~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          224 AS-----DDGYIKIYDVQH-ANL--AGTLS------------GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             EC-----TTSCEEEEETTT-CCE--EEEEC------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             Ec-----CCCeEEEEECCC-cce--eEEEc------------CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence            65     246799998753 221  11211            111122222  2234344555556678888888764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=87.62  E-value=23  Score=34.86  Aligned_cols=199  Identities=11%  Similarity=0.080  Sum_probs=101.3

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCC-CccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYP-FDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~-~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      .+|-|.+.. ..+.++.+|+.|+++..++..... ....++..+.  .. .+.+ +..   ..+.+|+..++.|+...  
T Consensus       416 ~~g~lWigt-~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~--~g-~lwi-gt~---~Gl~~~~~~~~~~~~~~--  485 (781)
T 3v9f_A          416 SEGNLWFGT-YLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK--NK-KIWI-GTH---AGVFVIDLASKKVIHHY--  485 (781)
T ss_dssp             TTSCEEEEE-TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT--TS-EEEE-EET---TEEEEEESSSSSCCEEE--
T ss_pred             CCCCEEEEe-ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC--CC-CEEE-EEC---CceEEEeCCCCeEEecc--
Confidence            455454432 235789999999998877643111 1122222222  22 3333 221   46889999999887664  


Q ss_pred             CCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEE
Q 018005          188 GFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLI  265 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv  265 (362)
                      ..+...... .....+..  +|.++ ++.....+..||++++++..+..+.    . +|... -..+...  .+|.|++.
T Consensus       486 ~~~~~~~~~-~~i~~i~~d~~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~----~-l~~~~-i~~i~~d--~~g~lWi~  555 (781)
T 3v9f_A          486 DTSNSQLLE-NFVRSIAQDSEGRFW-IGTFGGGVGIYTPDMQLVRKFNQYE----G-FCSNT-INQIYRS--SKGQMWLA  555 (781)
T ss_dssp             CTTTSSCSC-SCEEEEEECTTCCEE-EEESSSCEEEECTTCCEEEEECTTT----T-CSCSC-EEEEEEC--TTSCEEEE
T ss_pred             cCccccccc-ceeEEEEEcCCCCEE-EEEcCCCEEEEeCCCCeEEEccCCC----C-CCCCe-eEEEEEC--CCCCEEEE
Confidence            222101111 11223333  46665 4444335899999998887653221    0 33221 1233322  57888886


Q ss_pred             EEeecCCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          266 GGVGRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       266 ~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                      ..       ..+ ++.++..+ .++....-.     .+.    .......+...++.|++..  ...+..||+++++++.
T Consensus       556 T~-------~Gl-v~~~d~~~~~~~~~~~~~-----gl~----~~~i~~i~~d~~g~lW~~t--~~Gl~~~~~~~~~~~~  616 (781)
T 3v9f_A          556 TG-------EGL-VCFPSARNFDYQVFQRKE-----GLP----NTHIRAISEDKNGNIWAST--NTGISCYITSKKCFYT  616 (781)
T ss_dssp             ET-------TEE-EEESCTTTCCCEEECGGG-----TCS----CCCCCEEEECSSSCEEEEC--SSCEEEEETTTTEEEE
T ss_pred             EC-------CCc-eEEECCCCCcEEEccccC-----CCC----CceEEEEEECCCCCEEEEc--CCceEEEECCCCceEE
Confidence            53       222 14445443 355443210     010    0011111123356778864  4569999999988877


Q ss_pred             cC
Q 018005          345 LP  346 (362)
Q Consensus       345 ~~  346 (362)
                      ..
T Consensus       617 ~~  618 (781)
T 3v9f_A          617 YD  618 (781)
T ss_dssp             EC
T ss_pred             ec
Confidence            53

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=87.26  E-value=14  Score=31.95  Aligned_cols=191  Identities=10%  Similarity=0.087  Sum_probs=89.3

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc--cccccc
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKFDI  186 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~--W~~~~~  186 (362)
                      .+|-+++.+..++.+.+||..+++....-+.. ......+++.+.+   +.++.++  ....+.+|+..++.  .+... 
T Consensus        65 ~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~-~~~v~~~~~s~~~---~~l~s~~--~d~~v~iw~~~~~~~~~~~~~-  137 (340)
T 1got_B           65 TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR-SSWVMTCAYAPSG---NYVACGG--LDNICSIYNLKTREGNVRVSR-  137 (340)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEEEEECS-SSCEEEEEECTTS---SEEEEEE--TTCEEEEEETTTCSBSCEEEE-
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCCcceEeecC-CccEEEEEECCCC---CEEEEEe--CCCeEEEEECccCCCcceeEE-
Confidence            34433333334678999998887743321111 1112233443322   2344444  34688899987643  11111 


Q ss_pred             CCCCccccccCCCcccEEE-CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEE
Q 018005          187 DGFPSMILSQSSHQEGVFY-KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLI  265 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~-~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv  265 (362)
                       .+..  . ........+. +|.+. .+.....+..+|+.+.+-......       ......  .+...  -+|++++.
T Consensus       138 -~~~~--h-~~~v~~~~~~~~~~l~-s~s~d~~i~~wd~~~~~~~~~~~~-------h~~~v~--~~~~~--~~~~~l~s  201 (340)
T 1got_B          138 -ELAG--H-TGYLSCCRFLDDNQIV-TSSGDTTCALWDIETGQQTTTFTG-------HTGDVM--SLSLA--PDTRLFVS  201 (340)
T ss_dssp             -EEEC--C-SSCEEEEEEEETTEEE-EEETTSCEEEEETTTTEEEEEECC-------CSSCEE--EEEEC--TTSSEEEE
T ss_pred             -EecC--C-CccEEEEEECCCCcEE-EEECCCcEEEEECCCCcEEEEEcC-------CCCceE--EEEEC--CCCCEEEE
Confidence             0100  0 0000111122 45543 344445789999987654321111       111111  22211  47777777


Q ss_pred             EEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCce
Q 018005          266 GGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRTW  342 (362)
Q Consensus       266 ~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~w  342 (362)
                      ++     ....+.+|++.. +.  .+..+.            .+...+.++  ..++..++.+...+.+.+||+++++-
T Consensus       202 g~-----~d~~v~~wd~~~-~~--~~~~~~------------~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          202 GA-----CDASAKLWDVRE-GM--CRQTFT------------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             EE-----TTSCEEEEETTT-CS--EEEEEC------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             Ee-----CCCcEEEEECCC-Ce--eEEEEc------------CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            66     237899998743 22  111110            011222222  22334455555667899999987643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=87.21  E-value=13  Score=31.74  Aligned_cols=104  Identities=8%  Similarity=-0.016  Sum_probs=48.2

Q ss_pred             CCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc--ccccccCCCCccccccC
Q 018005          120 SSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS--WSKFDIDGFPSMILSQS  197 (362)
Q Consensus       120 ~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~--W~~~~~~~~p~~~~~~~  197 (362)
                      ++.+.+||..+++...+...........+.+.+...+-..++.++  ....+.+||..++.  -....  .... ....-
T Consensus        43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~--~~~~-~v~~~  117 (357)
T 3i2n_A           43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD--FGGNLHIWNLEAPEMPVYSVK--GHKE-IINAI  117 (357)
T ss_dssp             CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE--TTSCEEEECTTSCSSCSEEEC--CCSS-CEEEE
T ss_pred             CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec--CCCeEEEEeCCCCCccEEEEE--eccc-ceEEE
Confidence            567889999888765433222222222333333210013333333  24578899987764  11111  1110 00000


Q ss_pred             CCcc--cEEECCEEEEEecCCcEEEEEEcCCCe
Q 018005          198 SHQE--GVFYKGSLYFTTPEPFSIVRFDLENGI  228 (362)
Q Consensus       198 ~~~~--~v~~~G~ly~~~~~~~~i~~~D~~~~~  228 (362)
                      ....  ...-+|...+.+.....+..||+.+..
T Consensus       118 ~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A          118 DGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             EEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred             eeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence            0000  011245555555555578999998754

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=87.04  E-value=8.8  Score=32.77  Aligned_cols=106  Identities=12%  Similarity=0.073  Sum_probs=60.3

Q ss_pred             CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEEC-C
Q 018005          206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELG-C  284 (362)
Q Consensus       206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~-~  284 (362)
                      +|.+|+.......|..||++.+.-....         .+..  -..+...  -+|+||+....     .....|+.++ .
T Consensus        42 ~g~lyv~d~~~~~I~~~d~~g~~~~~~~---------~~~~--p~gia~~--~dG~l~vad~~-----~~~~~v~~~d~~  103 (306)
T 2p4o_A           42 DGTIFVTNHEVGEIVSITPDGNQQIHAT---------VEGK--VSGLAFT--SNGDLVATGWN-----ADSIPVVSLVKS  103 (306)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCEEEEEE---------CSSE--EEEEEEC--TTSCEEEEEEC-----TTSCEEEEEECT
T ss_pred             CCCEEEEeCCCCeEEEECCCCceEEEEe---------CCCC--ceeEEEc--CCCcEEEEecc-----CCcceEEEEcCC
Confidence            6889999866668999999875322222         2211  1223322  57899887652     1233455554 3


Q ss_pred             CCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 018005          285 GGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR  340 (362)
Q Consensus       285 ~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~  340 (362)
                      +++.+.+..++.      .     ....-.++..++.+|+.....+.++.+|+.++
T Consensus       104 ~g~~~~~~~~~~------~-----~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~  148 (306)
T 2p4o_A          104 DGTVETLLTLPD------A-----IFLNGITPLSDTQYLTADSYRGAIWLIDVVQP  148 (306)
T ss_dssp             TSCEEEEEECTT------C-----SCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred             CCeEEEEEeCCC------c-----cccCcccccCCCcEEEEECCCCeEEEEeCCCC
Confidence            455666655431      0     11111223456677887655678999998865

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=86.99  E-value=14  Score=31.84  Aligned_cols=155  Identities=11%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             CCCeEEEEeCCcCceeec-cCCCCCCccceEEEEeCC----------CceEEEEEeeecCCCeEEEEeCCCCc--ccccc
Q 018005          119 SSSSFLVCNLVTLSSRTI-DFPTYPFDFELLTLVSTP----------SGYKIFMLFAKSFPNYAFVYDSTDQS--WSKFD  185 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~l-P~~~~~~~~~~~~~~~~~----------~~ykv~~~~~~~~~~~~~vy~s~~~~--W~~~~  185 (362)
                      .++.+.+||..+++.... ...........+.+.+..          .+...++.++  ....+.+||..++.  |....
T Consensus       123 ~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~  200 (379)
T 3jrp_A          123 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLES  200 (379)
T ss_dssp             TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEE
Confidence            467899999888742111 100111122233333310          0123344443  23578888886543  43332


Q ss_pred             cCCCCccccccCCCcccEEE--C---CEEEEEecCCcEEEEEEcCCCe----eecCCCCCcccccCCCCcccccceeecc
Q 018005          186 IDGFPSMILSQSSHQEGVFY--K---GSLYFTTPEPFSIVRFDLENGI----WETPNDANDHMTMMLPHELTFFRLVNDG  256 (362)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~--~---G~ly~~~~~~~~i~~~D~~~~~----w~~~~~p~~~~~~~~p~~~~~~~lv~~~  256 (362)
                        .+..    ....-..+.+  +   |.+.+.++....+..||+.+..    ........      .+........  . 
T Consensus       201 --~~~~----h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------~~~~v~~~~~--s-  265 (379)
T 3jrp_A          201 --TLEG----HSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEK------FPDVLWRASW--S-  265 (379)
T ss_dssp             --EECC----CSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSC------CSSCEEEEEE--C-
T ss_pred             --EEec----ccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeecccc------CCCcEEEEEE--c-
Confidence              1111    0011122333  3   5666666655678999988752    22211000      1111111122  1 


Q ss_pred             cCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccH
Q 018005          257 EESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPE  296 (362)
Q Consensus       257 ~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~  296 (362)
                       -+|++++++..     ...+.+|+++..+.|..+..+..
T Consensus       266 -~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~  299 (379)
T 3jrp_A          266 -LSGNVLALSGG-----DNKVTLWKENLEGKWEPAGEVHQ  299 (379)
T ss_dssp             -SSSCCEEEEES-----SSSEEEEEEEETTEEEEEEEEC-
T ss_pred             -CCCCEEEEecC-----CCcEEEEeCCCCCccccccceec
Confidence             57776666652     36799999976667988877643

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=86.96  E-value=25  Score=34.59  Aligned_cols=220  Identities=10%  Similarity=0.087  Sum_probs=106.5

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCC----CCccceEEEEe
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTY----PFDFELLTLVS  152 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~----~~~~~~~~~~~  152 (362)
                      .+..||+..+++..+..+ .++...-..+....+|-+.+...  ..++++||.++++..+.....    ......+..+.
T Consensus       428 Gl~~~~~~~~~~~~~~~~-~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  504 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELE-KNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS  504 (781)
T ss_dssp             EEEEECSSSCEEEECCST-TTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT
T ss_pred             CEEEEcCCCCcEEEeccC-CCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcC
Confidence            345566666665555322 11111112233344665655442  578999999999877654321    11112222222


Q ss_pred             CCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEE-EEEEcCCCee
Q 018005          153 TPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSI-VRFDLENGIW  229 (362)
Q Consensus       153 ~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i-~~~D~~~~~w  229 (362)
                      .+   .+.+ +..  ...+..|+..++.++...  . +. .++. .....++.  +|.+++ +.. ..+ ..||++++++
T Consensus       505 ~g---~lWi-gt~--~~Gl~~~~~~~~~~~~~~--~-~~-~l~~-~~i~~i~~d~~g~lWi-~T~-~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          505 EG---RFWI-GTF--GGGVGIYTPDMQLVRKFN--Q-YE-GFCS-NTINQIYRSSKGQMWL-ATG-EGLVCFPSARNFDY  571 (781)
T ss_dssp             TC---CEEE-EES--SSCEEEECTTCCEEEEEC--T-TT-TCSC-SCEEEEEECTTSCEEE-EET-TEEEEESCTTTCCC
T ss_pred             CC---CEEE-EEc--CCCEEEEeCCCCeEEEcc--C-CC-CCCC-CeeEEEEECCCCCEEE-EEC-CCceEEECCCCCcE
Confidence            21   3332 221  134778999888887654  1 11 1211 11223343  577654 444 357 8999998887


Q ss_pred             ecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhcccc
Q 018005          230 ETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYH  308 (362)
Q Consensus       230 ~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~  308 (362)
                      ..+...    .+ +|.... ..++..  .+|.|++.+.       ..+..+  +..+. ......-.     .+..   .
T Consensus       572 ~~~~~~----~g-l~~~~i-~~i~~d--~~g~lW~~t~-------~Gl~~~--~~~~~~~~~~~~~d-----Gl~~---~  626 (781)
T 3v9f_A          572 QVFQRK----EG-LPNTHI-RAISED--KNGNIWASTN-------TGISCY--ITSKKCFYTYDHSN-----NIPQ---G  626 (781)
T ss_dssp             EEECGG----GT-CSCCCC-CEEEEC--SSSCEEEECS-------SCEEEE--ETTTTEEEEECGGG-----TCCS---S
T ss_pred             EEcccc----CC-CCCceE-EEEEEC--CCCCEEEEcC-------CceEEE--ECCCCceEEecccC-----Cccc---c
Confidence            764311    01 443322 344422  5788888753       233334  44433 44433211     0100   0


Q ss_pred             CCc-cEEEEeeCCEEEEEeecCCeEEEEECCC
Q 018005          309 NYD-HVYCFWHQGMICVCCYTWPEILYYNVAR  339 (362)
Q Consensus       309 ~~~-~~~~~~~~~~i~~~~~~~~~v~~yd~~~  339 (362)
                      ... ...+...++.|++..  ...+..||+++
T Consensus       627 ~f~~~~~~~~~~G~l~~g~--~~Gl~~f~p~~  656 (781)
T 3v9f_A          627 SFISGCVTKDHNGLIYFGS--INGLCFFNPDI  656 (781)
T ss_dssp             CEEEEEEEECTTSCEEEEE--TTEEEEECSCC
T ss_pred             ccccCceEECCCCEEEEEC--CCceEEEChhh
Confidence            011 111223456778865  45688888765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=86.90  E-value=15  Score=36.12  Aligned_cols=203  Identities=6%  Similarity=-0.003  Sum_probs=94.1

Q ss_pred             ceEEEecCCCCeEEEEeCCcCceeeccCCC-CCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccc-cCC
Q 018005          111 GLLCFSLPSSSSFLVCNLVTLSSRTIDFPT-YPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD-IDG  188 (362)
Q Consensus       111 Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~-~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~-~~~  188 (362)
                      |-.++.+..++.+.+||..++++..+.... .......+.+.+... ...++.++  ....+.+||..++.-.... ...
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~-~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEY-GPLLLVAS--SDGKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGG-CSEEEEEE--TTSEEEEEECCSSSCCCCEEEEC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCC-CCEEEEEe--CCCcEEEEEeecCCCcceeEeec
Confidence            533333334688999999998765443322 122233444443310 12334343  3468899998775221111 001


Q ss_pred             CCccccccCCCcccEEE---------------CCEEEEEecCCcEEEEEEcCCC--eeecCC-CCCcccccCCCCccccc
Q 018005          189 FPSMILSQSSHQEGVFY---------------KGSLYFTTPEPFSIVRFDLENG--IWETPN-DANDHMTMMLPHELTFF  250 (362)
Q Consensus       189 ~p~~~~~~~~~~~~v~~---------------~G~ly~~~~~~~~i~~~D~~~~--~w~~~~-~p~~~~~~~~p~~~~~~  250 (362)
                      .+       .....+..               +|...+.++....|..||+.+.  .+.... ...      ......  
T Consensus       144 ~~-------~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~------h~~~V~--  208 (753)
T 3jro_A          144 HA-------IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEG------HSDWVR--  208 (753)
T ss_dssp             CS-------SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECC------CSSCEE--
T ss_pred             CC-------CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecC------CCCcEE--
Confidence            11       01111111               2455555555557888988654  222211 000      111111  


Q ss_pred             ceeecccCC---CeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEe
Q 018005          251 RLVNDGEES---NKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCC  326 (362)
Q Consensus       251 ~lv~~~~~~---G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  326 (362)
                      .+...  -+   |++++.++.     ...+.+|.+..... +......       ...  ......-.++..++..++.+
T Consensus       209 ~l~~s--p~~~~~~~l~s~s~-----Dg~I~iwd~~~~~~~~~~~~~~-------~~~--~~~~v~~l~~spdg~~l~s~  272 (753)
T 3jro_A          209 DVAWS--PTVLLRSYLASVSQ-----DRTCIIWTQDNEQGPWKKTLLK-------EEK--FPDVLWRASWSLSGNVLALS  272 (753)
T ss_dssp             EEEEC--CCCSSSEEEEEEES-----SSCEEEEEESSSSSCCBCCBSS-------SSC--CSSCCCCEEECTTTCCEEEE
T ss_pred             EEEec--cCCCCCCEEEEEec-----CCEEEEecCCCCCCcceeEEec-------cCC--CCCceEEEEEcCCCCEEEEE
Confidence            22211  34   777777662     36799999965432 2211100       000  00001111222334444444


Q ss_pred             ecCCeEEEEECCC-CceEEcCC
Q 018005          327 YTWPEILYYNVAR-RTWHWLPS  347 (362)
Q Consensus       327 ~~~~~v~~yd~~~-~~w~~~~~  347 (362)
                      ...+.|.+||+++ ++|.....
T Consensus       273 s~Dg~I~vwd~~~~~~~~~~~~  294 (753)
T 3jro_A          273 GGDNKVTLWKENLEGKWEPAGE  294 (753)
T ss_dssp             CSSSCEECCBCCSSSCCBCCCC
T ss_pred             cCCCEEEEEecCCCCCcccccc
Confidence            4567899999984 46665543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=86.87  E-value=14  Score=31.59  Aligned_cols=204  Identities=11%  Similarity=0.107  Sum_probs=100.5

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec--CCCeEEEEeCCCCcccccc
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS--FPNYAFVYDSTDQSWSKFD  185 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~--~~~~~~vy~s~~~~W~~~~  185 (362)
                      +.+|-+++.....+.+.++|+.+++...+.... ......++++..+   ++++.....  ....+.+||..++.-+..-
T Consensus        53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~  128 (333)
T 2dg1_A           53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDII  128 (333)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEE
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEEEEEE
Confidence            455655554434578999999999877653211 1122344444332   344433211  1247889998877654221


Q ss_pred             cCCCCccccccCCCcccEEE--CCEEEEEecC------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeeccc
Q 018005          186 IDGFPSMILSQSSHQEGVFY--KGSLYFTTPE------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGE  257 (362)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~  257 (362)
                      . ....    . .....+.+  +|.+|+.+..      ...+..+|+++.+...+...       ..   ....+...  
T Consensus       129 ~-~~~~----~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------~~---~~~~i~~~--  190 (333)
T 2dg1_A          129 E-DLST----A-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN-------IS---VANGIALS--  190 (333)
T ss_dssp             C-SSSS----C-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE-------ES---SEEEEEEC--
T ss_pred             c-cCcc----C-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC-------CC---cccceEEC--
Confidence            0 1111    0 11223333  5888876543      24688898877655543101       10   01123212  


Q ss_pred             CCCe-EEEEEEeecCCccceEEEEEECCCCC-EEEEe-cccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEE
Q 018005          258 ESNK-LYLIGGVGRNGISTTMKLWELGCGGN-WIEVE-RVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILY  334 (362)
Q Consensus       258 ~~G~-L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~  334 (362)
                      -+|+ |++...     ....+.+|.++..+. ..... ....    .+..   .....-.++..++.+++.....+.|.+
T Consensus       191 ~dg~~l~v~~~-----~~~~i~~~d~~~~g~~~~~~~~~~~~----~~~~---~~~~~~i~~d~~G~l~v~~~~~~~v~~  258 (333)
T 2dg1_A          191 TDEKVLWVTET-----TANRLHRIALEDDGVTIQPFGATIPY----YFTG---HEGPDSCCIDSDDNLYVAMYGQGRVLV  258 (333)
T ss_dssp             TTSSEEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEE----ECCS---SSEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred             CCCCEEEEEeC-----CCCeEEEEEecCCCcCcccccceEEE----ecCC---CCCCCceEECCCCCEEEEEcCCCEEEE
Confidence            4665 666643     236788888854333 33221 1100    0000   000111223344567887655678999


Q ss_pred             EECCCCceEEc
Q 018005          335 YNVARRTWHWL  345 (362)
Q Consensus       335 yd~~~~~w~~~  345 (362)
                      ||++.+....+
T Consensus       259 ~d~~g~~~~~~  269 (333)
T 2dg1_A          259 FNKRGYPIGQI  269 (333)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99966555544

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=86.82  E-value=15  Score=31.93  Aligned_cols=240  Identities=8%  Similarity=-0.040  Sum_probs=97.4

Q ss_pred             eeeeeeCCCCCeEeecCCcCCCCCCceE-EEecCCceEEEecCCCCeEEEEeCCcCc-eeeccCC-CCCCccceEEEEeC
Q 018005           77 QYPLYDSTHGTWRRLSLPYSLLLPSAAT-LLSSSKGLLCFSLPSSSSFLVCNLVTLS-SRTIDFP-TYPFDFELLTLVST  153 (362)
Q Consensus        77 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~-~~~s~~Gll~~~~~~~~~~~v~NP~t~~-w~~lP~~-~~~~~~~~~~~~~~  153 (362)
                      .+.+||...+.|..+..-..  ...... +.-+.+|-.++.+..++.+.+||..+++ +...... ........+.+.+.
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  111 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSD--HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPN  111 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCC--CSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTT
T ss_pred             EEEEEEccCCceEEEEEEec--CCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCC
Confidence            35567766655444321100  111222 2233445333333345789999999987 3322211 11222223333332


Q ss_pred             CCceEEEEEeeecCCCeEEEEeCCCCc-ccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeee
Q 018005          154 PSGYKIFMLFAKSFPNYAFVYDSTDQS-WSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWE  230 (362)
Q Consensus       154 ~~~ykv~~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~  230 (362)
                      +   +.++.++  ....+.+||..++. |....  .+.. ..  ......+.+  +|.+.+.+.....+..||+.+....
T Consensus       112 ~---~~l~~~~--~d~~i~iwd~~~~~~~~~~~--~~~~-~h--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  181 (377)
T 3dwl_C          112 E---DKFAVGS--GARVISVCYFEQENDWWVSK--HLKR-PL--RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVD  181 (377)
T ss_dssp             S---SCCEEEE--SSSCEEECCC-----CCCCE--EECS-SC--CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC
T ss_pred             C---CEEEEEe--cCCeEEEEEECCcccceeee--Eeec-cc--CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccC
Confidence            2   2233333  23578889887654 54433  1111 00  011122223  4665555555557889998654322


Q ss_pred             cCCCCC---------cccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCC-EEEEecccHHHHH
Q 018005          231 TPNDAN---------DHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGN-WIEVERVPEMMCR  300 (362)
Q Consensus       231 ~~~~p~---------~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~-W~~v~~~p~~~~~  300 (362)
                      ....+.         ..... +.....-..+...  -+|++++.+.     ....+.+|++..... ...+..+.     
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s--p~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~-----  248 (377)
T 3dwl_C          182 AKPEASVWGSRLPFNTVCAE-YPSGGWVHAVGFS--PSGNALAYAG-----HDSSVTIAYPSAPEQPPRALITVK-----  248 (377)
T ss_dssp             -CCCSCSSCSCCCEEEEEEC-CCCSSSEEEEEEC--TTSSCEEEEE-----TTTEEC-CEECSTTSCEEECCCEE-----
T ss_pred             CCccccccccccchhhhhhc-ccCCceEEEEEEC--CCCCEEEEEe-----CCCcEEEEECCCCCCcceeeEeec-----
Confidence            211010         00000 1000001112111  4667666554     236899999964443 33333331     


Q ss_pred             HhhhccccCCccEEE--EeeCCEEEEEeecCCeEEEEECCCCceEEcCCCC
Q 018005          301 KFMSVCYHNYDHVYC--FWHQGMICVCCYTWPEILYYNVARRTWHWLPSCP  349 (362)
Q Consensus       301 ~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~  349 (362)
                             .....+.+  +..++.+++.+ ..+.++.|+.....|+......
T Consensus       249 -------~~~~~v~~~~~s~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (377)
T 3dwl_C          249 -------LSQLPLRSLLWANESAIVAAG-YNYSPILLQGNESGWAHTRDLD  291 (377)
T ss_dssp             -------CSSSCEEEEEEEETTEEEEEE-SSSSEEEECCCC---CCSBCCC
T ss_pred             -------CCCCceEEEEEcCCCCEEEEE-cCCcEEEEEeCCCceEEEeeec
Confidence                   11112222  23455555544 4567779999887776665544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=85.86  E-value=15  Score=31.01  Aligned_cols=181  Identities=8%  Similarity=0.036  Sum_probs=86.2

Q ss_pred             CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCC
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS  198 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~  198 (362)
                      .++.+.+|+..+++....-.. .......+++.+.+   +.++.++  ....+.+||..++.=...-. ...       .
T Consensus        43 ~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~---~~l~s~~--~d~~i~vwd~~~~~~~~~~~-~~~-------~  108 (312)
T 4ery_A           43 ADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDS---NLLVSAS--DDKTLKIWDVSSGKCLKTLK-GHS-------N  108 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS---SEEEEEE--TTSEEEEEETTTCCEEEEEE-CCS-------S
T ss_pred             CCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCC---CEEEEEC--CCCEEEEEECCCCcEEEEEc-CCC-------C
Confidence            356788899888876543221 11122334444332   3344343  34588999987754211100 000       0


Q ss_pred             CcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccce
Q 018005          199 HQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTT  276 (362)
Q Consensus       199 ~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~  276 (362)
                      ....+.+  +|.+.+.++....+..+|+.+.+-......       ......  .+...  .+|++++.+.     ....
T Consensus       109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------~~~~v~--~~~~~--~~~~~l~~~~-----~d~~  172 (312)
T 4ery_A          109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-------HSDPVS--AVHFN--RDGSLIVSSS-----YDGL  172 (312)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-------CSSCEE--EEEEC--TTSSEEEEEE-----TTSC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-------CCCcEE--EEEEc--CCCCEEEEEe-----CCCc
Confidence            1111222  355555555555789999987543221101       111111  12211  4777777765     2367


Q ss_pred             EEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEE--EEeeCCEEEEEeecCCeEEEEECCCCceE
Q 018005          277 MKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVY--CFWHQGMICVCCYTWPEILYYNVARRTWH  343 (362)
Q Consensus       277 i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~yd~~~~~w~  343 (362)
                      +.+|++.....=..+..              .....+.  .+..++..++.....+.+.+||+++.+-.
T Consensus       173 i~~wd~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~  227 (312)
T 4ery_A          173 CRIWDTASGQCLKTLID--------------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL  227 (312)
T ss_dssp             EEEEETTTCCEEEEECC--------------SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE
T ss_pred             EEEEECCCCceeeEEec--------------cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE
Confidence            89998743221111100              0011122  22233334444445678899999887543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=85.41  E-value=20  Score=32.12  Aligned_cols=187  Identities=10%  Similarity=0.083  Sum_probs=94.8

Q ss_pred             EecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccc
Q 018005          106 LSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFD  185 (362)
Q Consensus       106 ~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~  185 (362)
                      +...++++...+ .++.+.+||..+++....-.. ......++.+..   . . ++.++  ....+.+||..++.-...-
T Consensus       165 ~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~---~-~-l~s~s--~dg~i~~wd~~~~~~~~~~  235 (445)
T 2ovr_B          165 SQMRDNIIISGS-TDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE---K-R-VVSGS--RDATLRVWDIETGQCLHVL  235 (445)
T ss_dssp             EEEETTEEEEEE-TTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET---T-E-EEEEE--TTSEEEEEESSSCCEEEEE
T ss_pred             EEecCCEEEEEe-CCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC---C-E-EEEEe--CCCEEEEEECCCCcEEEEE
Confidence            333344444433 467899999999875332111 111222333322   1 2 33333  3468899998765421111


Q ss_pred             cCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEE
Q 018005          186 IDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLI  265 (362)
Q Consensus       186 ~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv  265 (362)
                          ..    .......+..+|...+.+.....+..||+.+.+-......       ...  .-..+.    .+|..+++
T Consensus       236 ----~~----~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~--~v~~~~----~~~~~l~~  294 (445)
T 2ovr_B          236 ----MG----HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG-------HTN--RVYSLQ----FDGIHVVS  294 (445)
T ss_dssp             ----EC----CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC-------CSS--CEEEEE----ECSSEEEE
T ss_pred             ----cC----CcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecC-------CCC--ceEEEE----ECCCEEEE
Confidence                00    0112234555787777776666899999887643221101       111  112232    57777766


Q ss_pred             EEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE-eeCCEEEEEeecCCeEEEEECCCCceE
Q 018005          266 GGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-WHQGMICVCCYTWPEILYYNVARRTWH  343 (362)
Q Consensus       266 ~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~v~~yd~~~~~w~  343 (362)
                      +.     ....+.+|++.....   +..+.            .....+.++ ..++. ++.+...+.+.+||+++++-.
T Consensus       295 ~~-----~d~~i~i~d~~~~~~---~~~~~------------~~~~~v~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~  352 (445)
T 2ovr_B          295 GS-----LDTSIRVWDVETGNC---IHTLT------------GHQSLTSGMELKDNI-LVSGNADSTVKIWDIKTGQCL  352 (445)
T ss_dssp             EE-----TTSCEEEEETTTCCE---EEEEC------------CCCSCEEEEEEETTE-EEEEETTSCEEEEETTTCCEE
T ss_pred             Ee-----CCCeEEEEECCCCCE---EEEEc------------CCcccEEEEEEeCCE-EEEEeCCCeEEEEECCCCcEE
Confidence            65     237799998853322   11111            011122233 34454 444445678999999876543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=85.41  E-value=18  Score=31.65  Aligned_cols=194  Identities=10%  Similarity=0.081  Sum_probs=86.4

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      +-+|-.++.+..++.+.+||...+....+..-  ......+.+.+.+ . .++ .++  ....+.+||..++.-...-  
T Consensus       117 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~-~l~-~~~--~d~~i~iwd~~~~~~~~~~--  187 (425)
T 1r5m_A          117 SHDGNSIVTGVENGELRLWNKTGALLNVLNFH--RAPIVSVKWNKDG-T-HII-SMD--VENVTILWNVISGTVMQHF--  187 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTSCEEEEECCC--CSCEEEEEECTTS-S-EEE-EEE--TTCCEEEEETTTTEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEeCCCCeeeeccCC--CccEEEEEECCCC-C-EEE-EEe--cCCeEEEEECCCCcEEEEe--
Confidence            34553333333457899999433333433321  1222334443322 1 233 232  2457889998776542221  


Q ss_pred             CCCccc--------cc--cCCCcccEEE-CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecc
Q 018005          188 GFPSMI--------LS--QSSHQEGVFY-KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDG  256 (362)
Q Consensus       188 ~~p~~~--------~~--~~~~~~~v~~-~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~  256 (362)
                      ......        ..  ........+. ++. ++.+.....+..||+.+.+-......       .........+.   
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~~~~~~-------~~~~i~~~~~~---  256 (425)
T 1r5m_A          188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPTGKLIG-------HHGPISVLEFN---  256 (425)
T ss_dssp             CCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCSEEECC-------CSSCEEEEEEE---
T ss_pred             eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCceeeeecc-------CCCceEEEEEC---
Confidence            111100        00  0001222333 444 44444445799999987533211101       11111222221   


Q ss_pred             cCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEE--EeeCCEEEEEeecCCeEEE
Q 018005          257 EESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYC--FWHQGMICVCCYTWPEILY  334 (362)
Q Consensus       257 ~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~v~~  334 (362)
                       -+|++++++.     ....+.+|.+.....-..+..               ....+.+  +..++ .++.....+.+.+
T Consensus       257 -~~~~~l~~~~-----~d~~i~i~d~~~~~~~~~~~~---------------~~~~i~~~~~~~~~-~l~~~~~d~~i~i  314 (425)
T 1r5m_A          257 -DTNKLLLSAS-----DDGTLRIWHGGNGNSQNCFYG---------------HSQSIVSASWVGDD-KVISCSMDGSVRL  314 (425)
T ss_dssp             -TTTTEEEEEE-----TTSCEEEECSSSBSCSEEECC---------------CSSCEEEEEEETTT-EEEEEETTSEEEE
T ss_pred             -CCCCEEEEEc-----CCCEEEEEECCCCccceEecC---------------CCccEEEEEECCCC-EEEEEeCCCcEEE
Confidence             4677666655     236789997753322111110               0111222  22344 4444555678888


Q ss_pred             EECCCCceE
Q 018005          335 YNVARRTWH  343 (362)
Q Consensus       335 yd~~~~~w~  343 (362)
                      ||+++++-.
T Consensus       315 ~d~~~~~~~  323 (425)
T 1r5m_A          315 WSLKQNTLL  323 (425)
T ss_dssp             EETTTTEEE
T ss_pred             EECCCCcEe
Confidence            998876543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=85.11  E-value=7.9  Score=40.34  Aligned_cols=178  Identities=9%  Similarity=0.067  Sum_probs=87.8

Q ss_pred             CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCC
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS  198 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~  198 (362)
                      .++.+.+||..+++....... .......+++.+.+   +.++.++  ....+.+|+..++......  ....      .
T Consensus       981 ~~g~i~i~d~~~~~~~~~~~~-h~~~v~~l~~s~dg---~~l~s~~--~dg~i~vwd~~~~~~~~~~--~~~~------~ 1046 (1249)
T 3sfz_A          981 EDGAIKIIELPNNRVFSSGVG-HKKAVRHIQFTADG---KTLISSS--EDSVIQVWNWQTGDYVFLQ--AHQE------T 1046 (1249)
T ss_dssp             TTSCCEEEETTTTSCEEECCC-CSSCCCCEEECSSS---SCEEEEC--SSSBEEEEETTTTEEECCB--CCSS------C
T ss_pred             CCCCEEEEEcCCCceeeeccc-CCCceEEEEECCCC---CEEEEEc--CCCEEEEEECCCCceEEEe--cCCC------c
Confidence            456788999888775432221 11122344454332   2233333  3458999999887665443  2111      1


Q ss_pred             CcccEEE-CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceE
Q 018005          199 HQEGVFY-KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTM  277 (362)
Q Consensus       199 ~~~~v~~-~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i  277 (362)
                      .....+. +|.+. .++....+..+|+.+.+.......       ..........  .  -+|++++.+..     ..++
T Consensus      1047 v~~~~~~~~~~l~-~~~~dg~v~vwd~~~~~~~~~~~~-------~~~~v~~~~~--s--~d~~~l~s~s~-----d~~v 1109 (1249)
T 3sfz_A         1047 VKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTC-------HQGTVLSCAI--S--SDATKFSSTSA-----DKTA 1109 (1249)
T ss_dssp             EEEEEECSSSEEE-EEESSSEEEEEETTTTCCCEEEEC-------CSSCCCCEEE--C--SSSSSCEEECC-----SSCC
T ss_pred             EEEEEEcCCCcEE-EEECCCcEEEEECCCCceeEEEcc-------cCCcEEEEEE--C--CCCCEEEEEcC-----CCcE
Confidence            1111222 34443 444445789999987643221000       1111112222  2  57777666552     3678


Q ss_pred             EEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCce
Q 018005          278 KLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRTW  342 (362)
Q Consensus       278 ~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~w  342 (362)
                      .+|.++....   +..+.            .+...+.++  ..++..++.+...+.|.+||+++++-
T Consensus      1110 ~iwd~~~~~~---~~~l~------------~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1110 KIWSFDLLSP---LHELK------------GHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             CEECSSSSSC---SBCCC------------CCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred             EEEECCCcce---eeeec------------cCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence            8997753321   11111            111223332  33444455555567899999998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=84.97  E-value=21  Score=31.96  Aligned_cols=187  Identities=12%  Similarity=0.059  Sum_probs=96.9

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCCCc
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQ  200 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~  200 (362)
                      ..+++||..+++...+.....  ....+.+.+++  -+++..........+++||..++..+...  ..+.       ..
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~--~~~~~~~spdg--~~la~~~~~~g~~~i~~~d~~~~~~~~l~--~~~~-------~~  269 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR--HNGAPAFSPDG--SKLAFALSKTGSLNLYVMDLASGQIRQVT--DGRS-------NN  269 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS--CEEEEEECTTS--SEEEEEECTTSSCEEEEEETTTCCEEECC--CCSS-------CE
T ss_pred             cEEEEEECCCCcEEEeecCCC--cccCEEEcCCC--CEEEEEEecCCCceEEEEECCCCCEEeCc--CCCC-------cc
Confidence            589999999999876654321  22334444332  23443443334457999999887765444  2111       11


Q ss_pred             ccEEE--CCE-EEEEecCC--cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccc
Q 018005          201 EGVFY--KGS-LYFTTPEP--FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGIST  275 (362)
Q Consensus       201 ~~v~~--~G~-ly~~~~~~--~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~  275 (362)
                      ..+..  +|. +++.....  ..|..+|+.+.+-..+. .       ......... + .  -+|+..++....  ....
T Consensus       270 ~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~-~-------~~~~~~~~~-~-s--pdG~~l~~~~~~--~g~~  335 (415)
T 2hqs_A          270 TEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-W-------EGSQNQDAD-V-S--SDGKFMVMVSSN--GGQQ  335 (415)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-C-------SSSEEEEEE-E-C--TTSSEEEEEEEC--SSCE
T ss_pred             cceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEe-c-------CCCcccCeE-E-C--CCCCEEEEEECc--CCce
Confidence            12222  565 55444322  36888898876544332 1       111111122 2 1  577766655432  1235


Q ss_pred             eEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEe-eCCEEEEEeecCC--eEEEEECCCCceEEcCCCC
Q 018005          276 TMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFW-HQGMICVCCYTWP--EILYYNVARRTWHWLPSCP  349 (362)
Q Consensus       276 ~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--~v~~yd~~~~~w~~~~~~~  349 (362)
                      .+.+|.++ .+....+..-              .......+. ++..|++.....+  .+..+|++.+..+.++..+
T Consensus       336 ~i~~~d~~-~~~~~~l~~~--------------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~  397 (415)
T 2hqs_A          336 HIAKQDLA-TGGVQVLSST--------------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATD  397 (415)
T ss_dssp             EEEEEETT-TCCEEECCCS--------------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSS
T ss_pred             EEEEEECC-CCCEEEecCC--------------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCC
Confidence            67777764 3334332211              001111222 3455665554333  6899999988888876543

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=84.52  E-value=20  Score=31.27  Aligned_cols=190  Identities=10%  Similarity=0.003  Sum_probs=89.0

Q ss_pred             ecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          107 SSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       107 ~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      .+-+|-.++.+..++.+.+||..+++....-.. .......+++...+.. . ++.++  ....+.+||..++.-.... 
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~-~-~~s~~--~dg~v~~wd~~~~~~~~~~-  220 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDT-I-FLSCG--EDGRILLWDTRKPKPATRI-  220 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSS-C-EEEEE--TTSCEEECCTTSSSCBCBC-
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCc-e-eeeec--cCCceEEEECCCCceeeee-
Confidence            344564444444467899999999875432211 1112223444333222 2 22222  2357889998775432221 


Q ss_pred             CCCCccccccCCCcccEEE---CCEEEEEecCCcEEEEEEcCCCeeec-CCCCCcccccCCCCcccccceeecccCCC-e
Q 018005          187 DGFPSMILSQSSHQEGVFY---KGSLYFTTPEPFSIVRFDLENGIWET-PNDANDHMTMMLPHELTFFRLVNDGEESN-K  261 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~---~G~ly~~~~~~~~i~~~D~~~~~w~~-~~~p~~~~~~~~p~~~~~~~lv~~~~~~G-~  261 (362)
                       ....    .......+.+   ++.+...+.....|..||+.+.+-.. +..        .....  ..+...  .+| +
T Consensus       221 -~~~~----~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--------~~~~v--~~l~~s--p~~~~  283 (357)
T 4g56_B          221 -DFCA----SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--------HSQNI--TGLAYS--YHSSP  283 (357)
T ss_dssp             -CCTT----CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--------CSSCE--EEEEEC--SSSSC
T ss_pred             -eecc----ccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--------cceeE--EEEEEc--CCCCC
Confidence             1110    0011123333   35555555555578899987653211 110        11111  122211  345 4


Q ss_pred             EEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE-e--eCCEEEEEeecCCeEEEEECC
Q 018005          262 LYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-W--HQGMICVCCYTWPEILYYNVA  338 (362)
Q Consensus       262 L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~--~~~~i~~~~~~~~~v~~yd~~  338 (362)
                      +.+.+.     ...++.||+++ .+  +.+..+.             +...+.++ .  .++.+++.....+.|.+||+.
T Consensus       284 ~lasgs-----~D~~i~iwd~~-~~--~~~~~~~-------------H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          284 FLASIS-----EDCTVAVLDAD-FS--EVFRDLS-------------HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             CEEEEE-----TTSCEEEECTT-SC--EEEEECC-------------CSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEEEEe-----CCCEEEEEECC-CC--cEeEECC-------------CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            444443     23679999663 22  2222221             11233333 2  244455655567789999987


Q ss_pred             CC
Q 018005          339 RR  340 (362)
Q Consensus       339 ~~  340 (362)
                      +.
T Consensus       343 ~~  344 (357)
T 4g56_B          343 SE  344 (357)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=83.94  E-value=16  Score=30.65  Aligned_cols=139  Identities=7%  Similarity=-0.043  Sum_probs=62.4

Q ss_pred             CCCeEEEEeCCcCceeeccCCCC---CCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccc
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPTY---PFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILS  195 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~~---~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~  195 (362)
                      .++.+.+||..+++-........   ......+.+.+...  .++.+........+.+++..+..-....  ....    
T Consensus       170 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~----  241 (318)
T 4ggc_A          170 NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--NVLATGGGTSDRHIRIWNVCSGACLSAV--DAHS----  241 (318)
T ss_dssp             TTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST--TEEEEEECTTTCEEEEEETTTCCEEEEE--ECSS----
T ss_pred             cCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC--cEEEEEecCCCCEEEEEecccccccccc--ccee----
Confidence            34678899988876322111110   11111222222222  2333333334457888888765433222  1000    


Q ss_pred             cCCCcccEEE-CC-EEEEEec-CCcEEEEEEcCCCeee-cCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC
Q 018005          196 QSSHQEGVFY-KG-SLYFTTP-EPFSIVRFDLENGIWE-TPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN  271 (362)
Q Consensus       196 ~~~~~~~v~~-~G-~ly~~~~-~~~~i~~~D~~~~~w~-~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~  271 (362)
                        ......+. ++ .+....+ ....|..||..+.+-. .+..        ......  .+..-  -+|++++.++    
T Consensus       242 --~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~g--------H~~~V~--~l~~s--pdg~~l~S~s----  303 (318)
T 4ggc_A          242 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG--------HTSRVL--SLTMS--PDGATVASAA----  303 (318)
T ss_dssp             --CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC--------CSSCEE--EEEEC--TTSSCEEEEE----
T ss_pred             --eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcC--------CCCCEE--EEEEc--CCCCEEEEEe----
Confidence              00111122 23 3333332 3457889998865332 2211        111111  22211  4777766665    


Q ss_pred             CccceEEEEEECC
Q 018005          272 GISTTMKLWELGC  284 (362)
Q Consensus       272 ~~~~~i~vw~l~~  284 (362)
                       ...++.||++.+
T Consensus       304 -~D~~v~iWd~~~  315 (318)
T 4ggc_A          304 -ADETLRLWRCFE  315 (318)
T ss_dssp             -TTTEEEEECCSC
T ss_pred             -cCCeEEEEECCC
Confidence             237899998753

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=83.91  E-value=19  Score=30.57  Aligned_cols=144  Identities=8%  Similarity=-0.039  Sum_probs=71.0

Q ss_pred             EEEecCCCCeEEEEeC-CcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc-------cccc
Q 018005          113 LCFSLPSSSSFLVCNL-VTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-------WSKF  184 (362)
Q Consensus       113 l~~~~~~~~~~~v~NP-~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~-------W~~~  184 (362)
                      .++.+..++.+.+||. .+++...+...........+.+.+  .. .++ .++  ....+.+||..+..       .+..
T Consensus        71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~--~~-~l~-s~~--~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           71 QIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG--DD-KLI-AAS--WDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET--TT-EEE-EEE--TTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC--CC-EEE-EEc--CCCeEEEEcccccccccccccCCee
Confidence            3333334678999999 888876665421222233444444  22 233 333  34578888875400       1111


Q ss_pred             ccCCCCccccccCCCcccEEECCEEEEEecCCcEEEEEEcCC-Ce--eecCCCCCcccccCCCCcccccceeecccC-CC
Q 018005          185 DIDGFPSMILSQSSHQEGVFYKGSLYFTTPEPFSIVRFDLEN-GI--WETPNDANDHMTMMLPHELTFFRLVNDGEE-SN  260 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~~~~i~~~D~~~-~~--w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~-~G  260 (362)
                      .  .+..     ......+.+++.-.+.+.....+..||+.+ ..  ......+       .....  ..+...  - +|
T Consensus       145 ~--~~~~-----~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-------~~~~i--~~i~~~--~~~~  206 (342)
T 1yfq_A          145 N--NTKV-----KNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG-------LKYQI--RDVALL--PKEQ  206 (342)
T ss_dssp             S--SSSS-----CCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS-------CSSCE--EEEEEC--SGGG
T ss_pred             e--EEee-----CCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecC-------CCCce--eEEEEC--CCCC
Confidence            1  1110     011223333322233444445799999987 32  2221111       12211  222211  3 67


Q ss_pred             eEEEEEEeecCCccceEEEEEECCC
Q 018005          261 KLYLIGGVGRNGISTTMKLWELGCG  285 (362)
Q Consensus       261 ~L~vv~~~~~~~~~~~i~vw~l~~~  285 (362)
                      ++++++.     ....+.+|.++..
T Consensus       207 ~~l~~~~-----~dg~i~i~~~~~~  226 (342)
T 1yfq_A          207 EGYACSS-----IDGRVAVEFFDDQ  226 (342)
T ss_dssp             CEEEEEE-----TTSEEEEEECCTT
T ss_pred             CEEEEEe-----cCCcEEEEEEcCC
Confidence            7777766     2478999999765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=83.68  E-value=24  Score=31.63  Aligned_cols=217  Identities=7%  Similarity=-0.027  Sum_probs=104.6

Q ss_pred             EEecCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCc-ccc
Q 018005          105 LLSSSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSK  183 (362)
Q Consensus       105 ~~~s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~-W~~  183 (362)
                      +....+|-|++.......+.++|+.+++...+......   ..++++..+.  .+++.... ....+.+++..++. .+.
T Consensus       136 la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~---~~ia~~~~g~--~l~~~d~~-~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          136 IAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG---GKPAVTKDKQ--RVYSIGWE-GTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             EEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB---CBCEECTTSS--EEEEEBSS-TTCEEEEEEGGGTTCEEE
T ss_pred             EEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC---CceeEecCCC--cEEEEecC-CCceEEEEEcCCCceeEE
Confidence            33446676776665567899999999887665433111   1144543322  44443322 22278888876532 122


Q ss_pred             cccCCCCccccccCCCcccEEE---CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccc-c-ceeecccC
Q 018005          184 FDIDGFPSMILSQSSHQEGVFY---KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTF-F-RLVNDGEE  258 (362)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~v~~---~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~-~-~lv~~~~~  258 (362)
                      ..  ..+. .. . ....++.+   +|.+|+... ...|..||+.+.....+....     ........ . .+... -.
T Consensus       210 ~g--~~~~-~~-~-~~p~~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~~~~~~~~-----~~g~~~~~P~~~ia~~-p~  277 (409)
T 3hrp_A          210 IG--QLGS-TF-S-GKIGAVALDETEEWLYFVDS-NKNFGRFNVKTQEVTLIKQLE-----LSGSLGTNPGPYLIYY-FV  277 (409)
T ss_dssp             EE--ECCT-TS-C-SCCCBCEECTTSSEEEEECT-TCEEEEEETTTCCEEEEEECC-----CCSCCCCSSCCEEEEE-TT
T ss_pred             ee--eccc-hh-c-CCcEEEEEeCCCCeEEEEEC-CCcEEEEECCCCCEEEEeccc-----ccCCCCCCccccEEEe-CC
Confidence            21  0000 00 0 11223333   589998543 447999999876544431000     01111111 1 34321 02


Q ss_pred             CCeEEEEEEeecCCccceEEEEEECCCCCEEEEeccc-HHHHHHhhhc-cccCCccEEEEeeCCEEEEEee-cCCeEEEE
Q 018005          259 SNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVP-EMMCRKFMSV-CYHNYDHVYCFWHQGMICVCCY-TWPEILYY  335 (362)
Q Consensus       259 ~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p-~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~-~~~~v~~y  335 (362)
                      +|.||+...     ....  |++++.++.-..+..-+ ..-..+-... .......-.++..++.||+... ....|..+
T Consensus       278 ~g~lyv~d~-----~~~~--I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~  350 (409)
T 3hrp_A          278 DSNFYMSDQ-----NLSS--VYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKL  350 (409)
T ss_dssp             TTEEEEEET-----TTTE--EEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEE
T ss_pred             CCEEEEEeC-----CCCE--EEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEE
Confidence            688998864     2244  44445555422221110 0000000000 0000111123333456899887 77789999


Q ss_pred             ECCCCceEEcC
Q 018005          336 NVARRTWHWLP  346 (362)
Q Consensus       336 d~~~~~w~~~~  346 (362)
                      |+.+++...+.
T Consensus       351 ~~~~G~v~~~~  361 (409)
T 3hrp_A          351 DILDGYVSTVA  361 (409)
T ss_dssp             ETTTTEEEEEE
T ss_pred             ECCCCEEEEEe
Confidence            98888777653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=83.50  E-value=24  Score=31.34  Aligned_cols=108  Identities=13%  Similarity=0.002  Sum_probs=57.6

Q ss_pred             CceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-----CCCeEEEEeCCCCccccc
Q 018005          110 KGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-----FPNYAFVYDSTDQSWSKF  184 (362)
Q Consensus       110 ~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-----~~~~~~vy~s~~~~W~~~  184 (362)
                      +..+++.+..++.+.+||+.+++....-...  .....+++.+.+.  .++......     ....+.+||..+++-...
T Consensus       223 ~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~~~g~--~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~  298 (433)
T 3bws_A          223 RDLVYCSNWISEDISVIDRKTKLEIRKTDKI--GLPRGLLLSKDGK--ELYIAQFSASNQESGGGRLGIYSMDKEKLIDT  298 (433)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEECCCC--SEEEEEEECTTSS--EEEEEEEESCTTCSCCEEEEEEETTTTEEEEE
T ss_pred             CCEEEEEecCCCcEEEEECCCCcEEEEecCC--CCceEEEEcCCCC--EEEEEECCCCccccCCCeEEEEECCCCcEEee
Confidence            3456555544678999999998865433221  1122333433322  333333221     234889999987643221


Q ss_pred             ccCCCCccccccCCCcccEEE--CC-EEEEEecCCcEEEEEEcCCCeee
Q 018005          185 DIDGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPFSIVRFDLENGIWE  230 (362)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~v~~--~G-~ly~~~~~~~~i~~~D~~~~~w~  230 (362)
                      .  ..+.       ....+.+  +| .+|+.+.....+..||+.+.+-.
T Consensus       299 ~--~~~~-------~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~  338 (433)
T 3bws_A          299 I--GPPG-------NKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ  338 (433)
T ss_dssp             E--EEEE-------CEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred             c--cCCC-------CcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE
Confidence            1  0010       1112333  45 57777666668999999876543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=83.36  E-value=23  Score=31.09  Aligned_cols=196  Identities=15%  Similarity=0.099  Sum_probs=87.8

Q ss_pred             ceEEEecCCCCeEEEEeCCcCc------eeeccC-C-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccc
Q 018005          111 GLLCFSLPSSSSFLVCNLVTLS------SRTIDF-P-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWS  182 (362)
Q Consensus       111 Gll~~~~~~~~~~~v~NP~t~~------w~~lP~-~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~  182 (362)
                      |-+++.+..++.+.+||..+++      ...... . ........+.+.+.+.  .+++.++  ....+.+||..++.-.
T Consensus       126 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~--~dg~v~iwd~~~~~~~  201 (416)
T 2pm9_A          126 DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLA--HVFASAG--SSNFASIWDLKAKKEV  201 (416)
T ss_dssp             TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCT--TEEEEES--SSSCEEEEETTTTEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCC--cEEEEEc--CCCCEEEEECCCCCcc
Confidence            4333333346789999999886      221111 1 1111223444543322  2333333  2457899999876532


Q ss_pred             ccccCCCCccccccCCCcccEEE--CC-EEEEEecCCc---EEEEEEcCCCeeecCCCCCcccccCCC--Ccccccceee
Q 018005          183 KFDIDGFPSMILSQSSHQEGVFY--KG-SLYFTTPEPF---SIVRFDLENGIWETPNDANDHMTMMLP--HELTFFRLVN  254 (362)
Q Consensus       183 ~~~~~~~p~~~~~~~~~~~~v~~--~G-~ly~~~~~~~---~i~~~D~~~~~w~~~~~p~~~~~~~~p--~~~~~~~lv~  254 (362)
                      ..-  ...............+.+  +| .+.+.+....   .+..||+.+..-....         +.  ....-..+..
T Consensus       202 ~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~---------~~~~~~~~v~~~~~  270 (416)
T 2pm9_A          202 IHL--SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQT---------LNQGHQKGILSLDW  270 (416)
T ss_dssp             EEE--CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBC---------CCSCCSSCEEEEEE
T ss_pred             eEE--eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEE---------eecCccCceeEEEe
Confidence            221  111000000111222333  23 3555554443   6888998864211100         11  1111122221


Q ss_pred             cccC-CCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCC-EEEEEeecCCeE
Q 018005          255 DGEE-SNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQG-MICVCCYTWPEI  332 (362)
Q Consensus       255 ~~~~-~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~v  332 (362)
                      .  - +|++++.+..     ...+.+|+++...   .+..+..      ..   ..... ..+..++ .+++.....+.+
T Consensus       271 s--~~~~~~l~s~~~-----dg~v~~wd~~~~~---~~~~~~~------~~---~~v~~-~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          271 C--HQDEHLLLSSGR-----DNTVLLWNPESAE---QLSQFPA------RG---NWCFK-TKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             C--SSCSSCEEEEES-----SSEEEEECSSSCC---EEEEEEC------SS---SCCCC-EEECTTCTTEEEECCSSSEE
T ss_pred             C--CCCCCeEEEEeC-----CCCEEEeeCCCCc---cceeecC------CC---CceEE-EEECCCCCCEEEEEecCCcE
Confidence            1  2 6777777662     3679999774322   2222210      00   00011 1222223 455555556778


Q ss_pred             EEEECCCCc
Q 018005          333 LYYNVARRT  341 (362)
Q Consensus       333 ~~yd~~~~~  341 (362)
                      .+||+++.+
T Consensus       331 ~iw~~~~~~  339 (416)
T 2pm9_A          331 EVQTLQNLT  339 (416)
T ss_dssp             EEEESCCCC
T ss_pred             EEEEccCCC
Confidence            999988754

>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}

Probab=83.29  E-value=1.1  Score=26.06  Aligned_cols=25  Identities=24%  Similarity=0.482  Sum_probs=21.3

Q ss_pred             CCCCChhhhcCCCHHHHHHHHccCC
Q 018005            5 RREMDPAIWSRLPEDLLDHVLSFLP   29 (362)
Q Consensus         5 ~~~~~~~~~~~LP~dll~~IL~rLp   29 (362)
                      ++..|++....||.|+.+|||+.-.
T Consensus        13 P~~VD~eVF~~LP~dIQ~Ells~~~   37 (48)
T 2kwv_A           13 PEGVDQEVFKQLPADIQEEILSGKS   37 (48)
T ss_dssp             CTTCCGGGTTTSCHHHHHHHTTCCC
T ss_pred             CCCCCHHHHHHCcHHHHHHHHhcch
Confidence            4458999999999999999998654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=83.26  E-value=19  Score=30.13  Aligned_cols=191  Identities=11%  Similarity=0.008  Sum_probs=94.8

Q ss_pred             EEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCcc
Q 018005          113 LCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSM  192 (362)
Q Consensus       113 l~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~  192 (362)
                      +++.....+.+..+||.++ ...+....  ....+++++..+   ++++...  ....+.+||..++..+...  .... 
T Consensus        42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~--~~~~~l~~~~dg---~l~v~~~--~~~~i~~~d~~~g~~~~~~--~~~~-  110 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS--HHQNGHCLNKQG---HLIACSH--GLRRLERQREPGGEWESIA--DSFE-  110 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC-EEEEESSC--SSEEEEEECTTC---CEEEEET--TTTEEEEECSTTCCEEEEE--CEET-
T ss_pred             EEEEeCCCCEEEEEECCCC-eEEEECCC--CCcceeeECCCC---cEEEEec--CCCeEEEEcCCCCcEEEEe--eccC-
Confidence            3333333568889999988 55554321  112234444332   3444322  2357899999888766543  1111 


Q ss_pred             ccccCCCcccEEE--CCEEEEEe----c-------------CCcEEEEEEcCCCeeecCCCCCcccccCCCCccccccee
Q 018005          193 ILSQSSHQEGVFY--KGSLYFTT----P-------------EPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLV  253 (362)
Q Consensus       193 ~~~~~~~~~~v~~--~G~ly~~~----~-------------~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv  253 (362)
                      .... .....+.+  +|.+|+..    .             ....|..||+. .+...+....     ..|     ..+.
T Consensus       111 ~~~~-~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~-----~~~-----~gi~  178 (296)
T 3e5z_A          111 GKKL-NSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDR-----VKP-----NGLA  178 (296)
T ss_dssp             TEEC-CCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCC-----SSE-----EEEE
T ss_pred             CCCC-CCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCC-----CCC-----ccEE
Confidence            0100 11223444  68888752    1             12368888887 4444322110     011     1232


Q ss_pred             ecccCCCeEEEEEEeecCCccceEEEEEECCCCCE-EEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeE
Q 018005          254 NDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNW-IEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEI  332 (362)
Q Consensus       254 ~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W-~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v  332 (362)
                      ..  -+|+++ +..    .....+.+|.++..++. .....+.  .    .    .....-.++..++.|++..  .+.|
T Consensus       179 ~s--~dg~~l-v~~----~~~~~i~~~~~~~~g~~~~~~~~~~--~----~----~~~p~~i~~d~~G~l~v~~--~~~v  239 (296)
T 3e5z_A          179 FL--PSGNLL-VSD----TGDNATHRYCLNARGETEYQGVHFT--V----E----PGKTDGLRVDAGGLIWASA--GDGV  239 (296)
T ss_dssp             EC--TTSCEE-EEE----TTTTEEEEEEECSSSCEEEEEEEEC--C----S----SSCCCSEEEBTTSCEEEEE--TTEE
T ss_pred             EC--CCCCEE-EEe----CCCCeEEEEEECCCCcCcCCCeEee--C----C----CCCCCeEEECCCCCEEEEc--CCeE
Confidence            12  578776 443    23467888888644555 2221110  0    0    0011112334455677765  5678


Q ss_pred             EEEECCCCceEEc
Q 018005          333 LYYNVARRTWHWL  345 (362)
Q Consensus       333 ~~yd~~~~~w~~~  345 (362)
                      .+||++.+....+
T Consensus       240 ~~~~~~g~~~~~~  252 (296)
T 3e5z_A          240 HVLTPDGDELGRV  252 (296)
T ss_dssp             EEECTTSCEEEEE
T ss_pred             EEECCCCCEEEEE
Confidence            8999886655544

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=82.70  E-value=24  Score=30.85  Aligned_cols=190  Identities=11%  Similarity=-0.015  Sum_probs=101.7

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      ..+|.|++.....+.+..+++.++....+...... .-.+++++...  -.++....  ....+++++.....-+...  
T Consensus        82 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~--g~ly~~d~--~~~~I~~~~~dG~~~~~l~--  154 (349)
T 3v64_C           82 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVH--DKLYWTDS--GTSRIEVANLDGAHRKVLL--  154 (349)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCS-CCCEEEEETTT--TEEEEEET--TTTEEEEEETTSCSCEEEE--
T ss_pred             ccccEEEEEeccCCceEEEecCCCCceEEEeCCCC-CccEEEEecCC--CeEEEEcC--CCCeEEEEcCCCCceEEEE--
Confidence            46777887765567899999988765544322111 11355565322  25665443  3357888887654322221  


Q ss_pred             CCCccccccCCCcccEEE---CCEEEEEecCC-cEEEEEEcCCCeeecCCCCCcccccCCCCccc-ccceeecccCCCeE
Q 018005          188 GFPSMILSQSSHQEGVFY---KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELT-FFRLVNDGEESNKL  262 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~---~G~ly~~~~~~-~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~-~~~lv~~~~~~G~L  262 (362)
                      .  . .+   ....++.+   +|.+||..... ..|..+|++...-..+.          ..... -..|... -.+|+|
T Consensus       155 ~--~-~l---~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~----------~~~~~~PnGla~d-~~~~~l  217 (349)
T 3v64_C          155 W--Q-SL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIA----------DTHLFWPNGLTID-YAGRRM  217 (349)
T ss_dssp             C--T-TC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESC----------CSSCSCEEEEEEE-TTTTEE
T ss_pred             e--C-CC---CCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEE----------ECCCCCcceEEEe-CCCCEE
Confidence            0  0 01   12334444   58999998665 68999998764333321          11111 1223321 037889


Q ss_pred             EEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 018005          263 YLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR  340 (362)
Q Consensus       263 ~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~  340 (362)
                      |++..     ....|..+.++.... +.+....       +     . .+......++.||+.....+.|..+|..++
T Consensus       218 Y~aD~-----~~~~I~~~~~dG~~~-~~~~~~~-------~-----~-~P~giav~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          218 YWVDA-----KHHVIERANLDGSHR-KAVISQG-------L-----P-HPFAITVFEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             EEEET-----TTTEEEEEETTSCSC-EEEECSS-------C-----S-SEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEC-----CCCEEEEEeCCCCce-EEEEeCC-------C-----C-CceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence            99865     346677776642222 2221110       0     0 112222256788888777778888885544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=81.40  E-value=29  Score=30.86  Aligned_cols=191  Identities=11%  Similarity=0.027  Sum_probs=99.5

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccC
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDID  187 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~  187 (362)
                      ..+|.|++.....+.+..+++.++....+...... .-.+++++...  -.+++...  ....+++++.....-+...  
T Consensus       125 ~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~-~p~glavd~~~--g~lY~~d~--~~~~I~~~~~dg~~~~~l~--  197 (386)
T 3v65_B          125 HRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLE-SPGGLAVDWVH--DKLYWTDS--GTSRIEVANLDGAHRKVLL--  197 (386)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCS-CCCCEEEETTT--TEEEEEET--TTTEEEECBTTSCSCEEEE--
T ss_pred             cCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCC-CccEEEEEeCC--CeEEEEcC--CCCeEEEEeCCCCceEEee--
Confidence            35677877765567899999988775554322111 11345555322  25665443  2347778777543322221  


Q ss_pred             CCCccccccCCCcccEEE---CCEEEEEecCC-cEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEE
Q 018005          188 GFPSMILSQSSHQEGVFY---KGSLYFTTPEP-FSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY  263 (362)
Q Consensus       188 ~~p~~~~~~~~~~~~v~~---~G~ly~~~~~~-~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~  263 (362)
                      .  . .+   ....++.+   +|.+||..... ..|..+|++...-..+....    ...|.     .|... ..+|+||
T Consensus       198 ~--~-~l---~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~----~~~Pn-----Glavd-~~~~~lY  261 (386)
T 3v65_B          198 W--Q-SL---EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH----LFWPN-----GLTID-YAGRRMY  261 (386)
T ss_dssp             C--S-SC---SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS----CSCEE-----EEEEE-GGGTEEE
T ss_pred             c--C-CC---CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC----CCCee-----eEEEe-CCCCEEE
Confidence            0  0 01   12334444   58999997655 68999998754332221010    00122     23320 0378899


Q ss_pred             EEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCC
Q 018005          264 LIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARR  340 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~  340 (362)
                      ++..     ....|.++.++....-+.+.. .       +      ..+......++.||+.......|..+|..++
T Consensus       262 ~aD~-----~~~~I~~~d~dG~~~~~~~~~-~-------~------~~P~giav~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          262 WVDA-----KHHVIERANLDGSHRKAVISQ-G-------L------PHPFAITVFEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             EEET-----TTTEEEEECTTSCSCEEEECS-S-------C------SSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEC-----CCCEEEEEeCCCCeeEEEEEC-C-------C------CCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence            9865     235566664432221222211 0       0      0112222356788888777778889985544

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=80.93  E-value=26  Score=30.07  Aligned_cols=237  Identities=8%  Similarity=-0.034  Sum_probs=108.1

Q ss_pred             ceeeeeeCCCCCeEeec-CCcCCCCCCceE-EEecCCc-eEEEecCCCCeEEEEeCCcCceeeccCC-CCCCccceEEEE
Q 018005           76 DQYPLYDSTHGTWRRLS-LPYSLLLPSAAT-LLSSSKG-LLCFSLPSSSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLV  151 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~-~~~~~~~~~~~~-~~~s~~G-ll~~~~~~~~~~~v~NP~t~~w~~lP~~-~~~~~~~~~~~~  151 (362)
                      ..+.+||...+.+..+. +. .  ...... +.-+-+| +++... .++.+.+||..++++...... ........+.+.
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~-~--h~~~v~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~  105 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELK-E--HNGQVTGVDWAPDSNRIVTCG-TDRNAYVWTLKGRTWKPTLVILRINRAARCVRWA  105 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEE-C--CSSCEEEEEEETTTTEEEEEE-TTSCEEEEEEETTEEEEEEECCCCSSCEEEEEEC
T ss_pred             CEEEEEeCCCCcEEeeeeec-C--CCCcccEEEEeCCCCEEEEEc-CCCeEEEEECCCCeeeeeEEeecCCCceeEEEEC
Confidence            34667777666533322 11 0  111222 2223344 444333 457899999999886543322 222223344444


Q ss_pred             eCCCceEEEEEeeecCCCeEEEEeCCCCc-ccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCe
Q 018005          152 STPSGYKIFMLFAKSFPNYAFVYDSTDQS-WSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGI  228 (362)
Q Consensus       152 ~~~~~ykv~~~~~~~~~~~~~vy~s~~~~-W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~  228 (362)
                      +.+   +.+++++  ....+.+||..++. |....  .... ..  ......+.+  +|...+.+.....+..||+....
T Consensus       106 ~~~---~~l~~~~--~d~~v~i~d~~~~~~~~~~~--~~~~-~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  175 (372)
T 1k8k_C          106 PNE---KKFAVGS--GSRVISICYFEQENDWWVCK--HIKK-PI--RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE  175 (372)
T ss_dssp             TTS---SEEEEEE--TTSSEEEEEEETTTTEEEEE--EECT-TC--CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred             CCC---CEEEEEe--CCCEEEEEEecCCCcceeee--eeec-cc--CCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc
Confidence            332   2333333  23567787776543 32222  1100 00  011122222  56665566555578899965321


Q ss_pred             eecCC--------CC-CcccccCCC-CcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHH
Q 018005          229 WETPN--------DA-NDHMTMMLP-HELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMM  298 (362)
Q Consensus       229 w~~~~--------~p-~~~~~~~~p-~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~  298 (362)
                      -....        .+ ...... +. ....-..+...  -+|++++.+.     ....+.+|++.....   +..+.   
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~--~~~~~l~~~~-----~d~~i~i~d~~~~~~---~~~~~---  241 (372)
T 1k8k_C          176 VEERPAPTPWGSKMPFGELMFE-SSSSCGWVHGVCFS--ANGSRVAWVS-----HDSTVCLADADKKMA---VATLA---  241 (372)
T ss_dssp             TSCCCCCBTTBSCCCTTCEEEE-CCCCSSCEEEEEEC--SSSSEEEEEE-----TTTEEEEEEGGGTTE---EEEEE---
T ss_pred             ccccccccccccccchhhheEe-cCCCCCeEEEEEEC--CCCCEEEEEe-----CCCEEEEEECCCCce---eEEEc---
Confidence            11000        00 000000 11 00011122211  4666666655     236799998853321   11111   


Q ss_pred             HHHhhhccccCCccEE--EEeeCCEEEEEeecCCeEEEEECCC--CceEEcCCCCC
Q 018005          299 CRKFMSVCYHNYDHVY--CFWHQGMICVCCYTWPEILYYNVAR--RTWHWLPSCPS  350 (362)
Q Consensus       299 ~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~v~~yd~~~--~~w~~~~~~~~  350 (362)
                               .....+.  ++..++.+++.+ ..+.+.+||+++  ++|..+...+.
T Consensus       242 ---------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~  287 (372)
T 1k8k_C          242 ---------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDV  287 (372)
T ss_dssp             ---------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCC
T ss_pred             ---------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCc
Confidence                     0111222  223455555544 667899999999  99988866654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-08
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	7e-07
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	3e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	0.001

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (115), Expect = 1e-08
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
          W  LP++LL  + S L    LLK+   CK +  L    S 
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 7e-07
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAFSCFILLSHP 72
           S LP++L  +VLSFL PK LL+   TC+++  L      L + KC        + +   
Sbjct: 19 ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNL-LWREKCKEEGIDEPLHIKRR 77

Query: 73 QCYDQYPLYDSTHGTWRRL 91
          +      +    H  W+  
Sbjct: 78 KVIKPGFI----HSPWKSA 92

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 8/51 (15%), Positives = 23/51 (45%)

Query: 13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFLSKTKCSSSAF 63
           + LP ++   + ++L  + ++      +++N ++   + L K    S  F
Sbjct: 6  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENF 56

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 12 IWSRLPEDLLDHV----LSFLPPKMLLKLRSTCKHFNSLLFSPSF 52
            + LP   LDH+    LS+L  K L      CK +  +      
Sbjct: 10 FITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGML 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.82
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.67
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.53
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.29
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.19
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.62
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.57
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.19
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	91.58
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	91.33
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	90.62
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	87.38
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	86.91

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.3e-18  Score=148.86  Aligned_cols=244  Identities=16%  Similarity=0.138  Sum_probs=171.3

Q ss_pred             ceeeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecCC---------CCeEEEEeCCcCceeeccCCCCCCccc
Q 018005           76 DQYPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLPS---------SSSFLVCNLVTLSSRTIDFPTYPFDFE  146 (362)
Q Consensus        76 ~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~~---------~~~~~v~NP~t~~w~~lP~~~~~~~~~  146 (362)
                      ..++.||+..++|.+++   ++|.++....+++.+|-+++.++.         ...+.+|||.+++|..+++++.++..+
T Consensus        19 ~~~~~yd~~t~~W~~~~---~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLA---DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECC---CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            35778999999999985   344445444455556766666541         247899999999999999998887766


Q ss_pred             eEEEEeCCCceEEEEEeeecC---CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEECCEEEEEecC-----CcE
Q 018005          147 LLTLVSTPSGYKIFMLFAKSF---PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFYKGSLYFTTPE-----PFS  218 (362)
Q Consensus       147 ~~~~~~~~~~ykv~~~~~~~~---~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~~G~ly~~~~~-----~~~  218 (362)
                      ..+....    +++++++...   ...++.|+..++.|...+  ..+.    .+..+..+..++.+|.+++.     ...
T Consensus        96 ~~~~~~~----~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~r~~~~~~~~~~~~~~~GG~~~~~~~~~  165 (288)
T d1zgka1          96 GVGVIDG----HIYAVGGSHGCIHHNSVERYEPERDEWHLVA--PMLT----RRIGVGVAVLNRLLYAVGGFDGTNRLNS  165 (288)
T ss_dssp             EEEEETT----EEEEECCEETTEECCCEEEEETTTTEEEECC--CCSS----CCBSCEEEEETTEEEEECCBCSSCBCCC
T ss_pred             eccccce----eeEEecceecccccceeeeeccccCcccccc--cccc----ccccceeeeeeecceEecCcccccccce
Confidence            6554432    7777776532   347899999999998887  5544    33567788889999998763     246


Q ss_pred             EEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCC-CEEEEecccHH
Q 018005          219 IVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGG-NWIEVERVPEM  297 (362)
Q Consensus       219 i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~  297 (362)
                      +..||+.+++|.....        .+..........   .+++|+++++...........++  +... .|+.+..+|. 
T Consensus       166 ~~~~d~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~i~i~GG~~~~~~~~~~~~~--~~~~~~~~~~~~~p~-  231 (288)
T d1zgka1         166 AECYYPERNEWRMITA--------MNTIRSGAGVCV---LHNCIYAAGGYDGQDQLNSVERY--DVETETWTFVAPMKH-  231 (288)
T ss_dssp             EEEEETTTTEEEECCC--------CSSCCBSCEEEE---ETTEEEEECCBCSSSBCCCEEEE--ETTTTEEEECCCCSS-
T ss_pred             EEEeeccccccccccc--------cccccccccccc---eeeeEEEecCccccccccceeee--eecceeeecccCccC-
Confidence            8999999999997542        333444445553   79999999986543334444545  4444 4999887652 


Q ss_pred             HHHHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          298 MCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                                 .+....++..++.||+.++.     ...+++||+++++|+.++.+|.+..-++.
T Consensus       232 -----------~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~  285 (288)
T d1zgka1         232 -----------RRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGV  285 (288)
T ss_dssp             -----------CCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             -----------cccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEECCCCCCCcEeEEE
Confidence                       11223445567888888643     23589999999999999999988655543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.9e-15  Score=127.04  Aligned_cols=203  Identities=11%  Similarity=0.092  Sum_probs=143.6

Q ss_pred             CeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeec-------CCCeEEEEeCCCCcccccccCCCCccc
Q 018005          121 SSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKS-------FPNYAFVYDSTDQSWSKFDIDGFPSMI  193 (362)
Q Consensus       121 ~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~-------~~~~~~vy~s~~~~W~~~~~~~~p~~~  193 (362)
                      ..+.+|||.|++|..+++++.++..+.++....    +++++||..       ....+++||+.+++|+..+  .+|.  
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~----~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~--~~p~--   90 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGG----LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCA--PMSV--   90 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETT----EEEEECCEEEETTEEEECCCEEEEETTTTEEEECC--CCSS--
T ss_pred             ceEEEEECCCCeEEECCCCCCccceeEEEEECC----EEEEEeCcccCCCCccccchhhhcccccccccccc--cccc--
Confidence            468899999999999999988776655544432    788887742       1348999999999999998  6765  


Q ss_pred             cccCCCcccEEECCEEEEEecC-----CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEe
Q 018005          194 LSQSSHQEGVFYKGSLYFTTPE-----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGV  268 (362)
Q Consensus       194 ~~~~~~~~~v~~~G~ly~~~~~-----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~  268 (362)
                        .+..+.++.++|++|++++.     ......||+.++.|.... +       +|..+..+..+.   .+++++++++.
T Consensus        91 --~r~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~r~~~~~~~---~~~~~~~~GG~  157 (288)
T d1zgka1          91 --PRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVA-P-------MLTRRIGVGVAV---LNRLLYAVGGF  157 (288)
T ss_dssp             --CCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECC-C-------CSSCCBSCEEEE---ETTEEEEECCB
T ss_pred             --eecceeccccceeeEEecceecccccceeeeeccccCcccccc-c-------cccccccceeee---eeecceEecCc
Confidence              34567788899999998752     235788999999998753 2       445555555553   89999999886


Q ss_pred             ecCCccceEEEEEECCCC-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeec-----CCeEEEEECCCCce
Q 018005          269 GRNGISTTMKLWELGCGG-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYT-----WPEILYYNVARRTW  342 (362)
Q Consensus       269 ~~~~~~~~i~vw~l~~~~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~v~~yd~~~~~w  342 (362)
                      ........+++|  +... .|......+.            ......++..++.|++.++.     ......||+.+++|
T Consensus       158 ~~~~~~~~~~~~--d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~  223 (288)
T d1zgka1         158 DGTNRLNSAECY--YPERNEWRMITAMNT------------IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW  223 (288)
T ss_dssp             CSSCBCCCEEEE--ETTTTEEEECCCCSS------------CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             ccccccceEEEe--ecccccccccccccc------------ccccccccceeeeEEEecCccccccccceeeeeecceee
Confidence            543344555555  4444 4887766542            11222344556777777532     23589999999999


Q ss_pred             EEcCCCCCCCCCCCcc
Q 018005          343 HWLPSCPSLPHKWSCG  358 (362)
Q Consensus       343 ~~~~~~~~~~~~~~~~  358 (362)
                      +.++..|.+....++.
T Consensus       224 ~~~~~~p~~r~~~~~~  239 (288)
T d1zgka1         224 TFVAPMKHRRSALGIT  239 (288)
T ss_dssp             EECCCCSSCCBSCEEE
T ss_pred             ecccCccCcccceEEE
Confidence            9999888876555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.53  E-value=2.8e-13  Score=122.08  Aligned_cols=261  Identities=11%  Similarity=0.053  Sum_probs=153.9

Q ss_pred             eeeeeCCCCCeEeecCCcCCCCCCceEEEecCCceEEEecC-CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCc
Q 018005           78 YPLYDSTHGTWRRLSLPYSLLLPSAATLLSSSKGLLCFSLP-SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSG  156 (362)
Q Consensus        78 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~~~s~~Gll~~~~~-~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~  156 (362)
                      ...|||..++|..++.............+...+|.+++.++ ..+.+.+|||.|++|..+|.++.++..+..+...+   
T Consensus        54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d---  130 (387)
T d1k3ia3          54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD---  130 (387)
T ss_dssp             EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT---
T ss_pred             EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecC---
Confidence            56799999999876421110111223334556777666654 34689999999999999999988776665554332   


Q ss_pred             eEEEEEeeecC----CCeEEEEeCCCCcccccccCCCCcccccc-------CCCccc-EEE--CCEEEEEecCCcEEEEE
Q 018005          157 YKIFMLFAKSF----PNYAFVYDSTDQSWSKFDIDGFPSMILSQ-------SSHQEG-VFY--KGSLYFTTPEPFSIVRF  222 (362)
Q Consensus       157 ykv~~~~~~~~----~~~~~vy~s~~~~W~~~~~~~~p~~~~~~-------~~~~~~-v~~--~G~ly~~~~~~~~i~~~  222 (362)
                      -+|+++++...    ...+++||+.+++|+..+  .++......       ...... ++.  +|++|..++....+..|
T Consensus       131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~  208 (387)
T d1k3ia3         131 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP--NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYY  208 (387)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEET--TSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEE
T ss_pred             CceeeeccccccccccceeeeecCCCCceeecC--CCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEec
Confidence            26777777532    348999999999999876  333211100       011111 222  68888777666678889


Q ss_pred             EcCCCeeecCCCCCcccccCCCCcccccc-eeecccCCCeEEEEEEeecCC---ccceEEEEEECCCC----CEEEEecc
Q 018005          223 DLENGIWETPNDANDHMTMMLPHELTFFR-LVNDGEESNKLYLIGGVGRNG---ISTTMKLWELGCGG----NWIEVERV  294 (362)
Q Consensus       223 D~~~~~w~~~~~p~~~~~~~~p~~~~~~~-lv~~~~~~G~L~vv~~~~~~~---~~~~i~vw~l~~~~----~W~~v~~~  294 (362)
                      |+.+..|........ .....+....... +...  .+|+++++++.....   ......+..+....    .|..+..|
T Consensus       209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (387)
T d1k3ia3         209 TSGSGDVKSAGKRQS-NRGVAPDAMCGNAVMYDA--VKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGL  285 (387)
T ss_dssp             CSTTCEEEEEEECEE-TTEECCCCBTCEEEEEET--TTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCC
T ss_pred             CcccCcEeecccccc-CcccCcccccccEEEeec--cCCceEEEEeccCCCCCcccceeecccccccccCCCceeecccc
Confidence            999999976421100 0000122222222 2212  689999999854311   12233444443222    16666666


Q ss_pred             cHHHHHHhhhccccCCccEEEEeeCCEEEEEeecC-----------CeEEEEECCCCceEEcCCCCCCCCCCCc
Q 018005          295 PEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTW-----------PEILYYNVARRTWHWLPSCPSLPHKWSC  357 (362)
Q Consensus       295 p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----------~~v~~yd~~~~~w~~~~~~~~~~~~~~~  357 (362)
                      |..           ....-.++..++.||+.++..           ..+++||+++++|+.++++|.++.-++.
T Consensus       286 p~~-----------r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~  348 (387)
T d1k3ia3         286 YFA-----------RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSI  348 (387)
T ss_dssp             SSC-----------CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEE
T ss_pred             ccc-----------cccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCCCCcccceEE
Confidence            521           011112223356788876421           1478999999999999999987765553

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.5e-13  Score=77.92  Aligned_cols=40  Identities=35%  Similarity=0.595  Sum_probs=37.2

Q ss_pred             hcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccc
Q 018005           13 WSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF   52 (362)
Q Consensus        13 ~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F   52 (362)
                      |..||+|++.+||++||++++.++++|||+|+++++++.+
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            5789999999999999999999999999999999987653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.19  E-value=3.5e-11  Score=108.01  Aligned_cols=206  Identities=8%  Similarity=-0.013  Sum_probs=124.7

Q ss_pred             eCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCC---------CeEEEEeCCCCcccccccCCCCccccccC
Q 018005          127 NLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFP---------NYAFVYDSTDQSWSKFDIDGFPSMILSQS  197 (362)
Q Consensus       127 NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~---------~~~~vy~s~~~~W~~~~~~~~p~~~~~~~  197 (362)
                      .|.+++|...++++..+.  ..+...  .+-||+++++....         ..+++||+.+++|+...  .++. .....
T Consensus         5 ~p~~g~W~~~~~~p~~~~--~~a~~~--~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~--~~~~-~~~~~   77 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVPA--AAAIEP--TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT--VTVT-KHDMF   77 (387)
T ss_dssp             CTTSCEEEEEEECSSCCS--EEEEET--TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE--EEEC-SCCCS
T ss_pred             CCCCCccCCcCCCCcccc--EEEEEe--eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC--CCCC-Ccccc
Confidence            488999998877654432  333332  23389999885311         15889999999998765  3322 11111


Q ss_pred             CCcccEEECCEEEEEecC-CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecC-Cccc
Q 018005          198 SHQEGVFYKGSLYFTTPE-PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRN-GIST  275 (362)
Q Consensus       198 ~~~~~v~~~G~ly~~~~~-~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~-~~~~  275 (362)
                      .....+..+|++|+.++. ...+.+||+.+++|+... +       +|..+..+..+..  .+|+++++++.... ....
T Consensus        78 ~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~-~-------~~~~r~~~~~~~~--~dG~v~v~GG~~~~~~~~~  147 (387)
T d1k3ia3          78 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGP-D-------MQVARGYQSSATM--SDGRVFTIGGSWSGGVFEK  147 (387)
T ss_dssp             SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECC-C-------CSSCCSSCEEEEC--TTSCEEEECCCCCSSSCCC
T ss_pred             eeEEEEecCCcEEEeecCCCcceeEecCccCcccccc-c-------ccccccccceeee--cCCceeeeccccccccccc
Confidence            112233348999998764 357899999999999753 3       5555444444422  68999999885432 2345


Q ss_pred             eEEEEEECCCCCEEEEecccHHHHHHhhh--ccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEEcCCCCC
Q 018005          276 TMKLWELGCGGNWIEVERVPEMMCRKFMS--VCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHWLPSCPS  350 (362)
Q Consensus       276 ~i~vw~l~~~~~W~~v~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~~~~~~~  350 (362)
                      .+++|.. ..++|+.+..++.........  ............+.++.+++.+.....+..||..+..|......+.
T Consensus       148 ~v~~yd~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  223 (387)
T d1k3ia3         148 NGEVYSP-SSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS  223 (387)
T ss_dssp             CEEEEET-TTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred             eeeeecC-CCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeecccccc
Confidence            6777754 234599987664332110100  0001112223334456677766566678999999999998765544

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.7e-09  Score=74.00  Aligned_cols=44  Identities=36%  Similarity=0.469  Sum_probs=39.9

Q ss_pred             ChhhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccCccc
Q 018005            9 DPAIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSF   52 (362)
Q Consensus         9 ~~~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F   52 (362)
                      ....++.||+||+.+||++|++.+++++++|||.|+.++.++.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~l   58 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL   58 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHH
Confidence            34567889999999999999999999999999999999988765

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=6.6e-09  Score=73.99  Aligned_cols=39  Identities=10%  Similarity=0.295  Sum_probs=36.1

Q ss_pred             hhhcCCCHHHHHHHHccCChhhhhhhhccchhhhhhccC
Q 018005           11 AIWSRLPEDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFS   49 (362)
Q Consensus        11 ~~~~~LP~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~   49 (362)
                      ..++.||+||+.+||+.|+++++++++.|||+|+.++++
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            357889999999999999999999999999999999864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.1e-07  Score=69.71  Aligned_cols=43  Identities=21%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             hhhcCCC----HHHHHHHHccCChhhhhhhhccchhhhhhccCcccc
Q 018005           11 AIWSRLP----EDLLDHVLSFLPPKMLLKLRSTCKHFNSLLFSPSFL   53 (362)
Q Consensus        11 ~~~~~LP----~dll~~IL~rLp~~~l~~~r~VcK~W~~~i~~~~F~   53 (362)
                      .+++.||    +||+.+||+.|++++|+++++|||.|+.+++++.+=
T Consensus         9 D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lW   55 (118)
T d1p22a1           9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLW   55 (118)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHH
T ss_pred             cHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHH
Confidence            4667777    599999999999999999999999999999876553

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.95  E-value=0.76  Score=37.61  Aligned_cols=202  Identities=10%  Similarity=0.063  Sum_probs=95.5

Q ss_pred             cCCceEEEecCCCCeEEEEeCCcCceeeccCC-CCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCccccccc
Q 018005          108 SSKGLLCFSLPSSSSFLVCNLVTLSSRTIDFP-TYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       108 s~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~-~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      +-+|-.++.+..++.+.+||..+++......+ .......++.+.+.+   +.+++++......+.+++..+++-..   
T Consensus        67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~---~~l~~~~~~~~~~~~v~~~~~~~~~~---  140 (311)
T d1nr0a1          67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSES---KRIAAVGEGRERFGHVFLFDTGTSNG---  140 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTS---CEEEEEECCSSCSEEEEETTTCCBCB---
T ss_pred             eCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccc---cccccccccccccccccccccccccc---
Confidence            45664445554568899999988874321111 111222344444322   33344443334467788876653211   


Q ss_pred             CCCCccccccCCCcccEEE--CCEE-EEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEE
Q 018005          187 DGFPSMILSQSSHQEGVFY--KGSL-YFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLY  263 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~--~G~l-y~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~  263 (362)
                       .+..    ....-..+.+  +|.. .+.+.....+..||..+.+.......       .....  ..+...  -+|+++
T Consensus       141 -~l~~----h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~-------~~~~i--~~v~~~--p~~~~l  204 (311)
T d1nr0a1         141 -NLTG----QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-------HTKFV--HSVRYN--PDGSLF  204 (311)
T ss_dssp             -CCCC----CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-------CSSCE--EEEEEC--TTSSEE
T ss_pred             -cccc----cccccccccccccceeeeccccccccccccccccccccccccc-------ccccc--cccccC--cccccc
Confidence             1111    0011122333  3543 33344445788999987654432111       11111  122211  477777


Q ss_pred             EEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE--eeCCEEEEEeecCCeEEEEECCCCc
Q 018005          264 LIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF--WHQGMICVCCYTWPEILYYNVARRT  341 (362)
Q Consensus       264 vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~v~~yd~~~~~  341 (362)
                      +.++     ....+.+|.+....   ++..+....    .. ..++...+.++  ..++..++.+...+.|.+||+++++
T Consensus       205 ~~~~-----~d~~v~~~d~~~~~---~~~~~~~~~----~~-~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         205 ASTG-----GDGTIVLYNGVDGT---KTGVFEDDS----LK-NVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             EEEE-----TTSCEEEEETTTCC---EEEECBCTT----SS-SCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccc-----cccccccccccccc---ccccccccc----cc-cccccccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            7665     23678999774322   222221100    00 00111223333  2233444445456679999999886


Q ss_pred             eEE
Q 018005          342 WHW  344 (362)
Q Consensus       342 w~~  344 (362)
                      -..
T Consensus       272 ~~~  274 (311)
T d1nr0a1         272 VEK  274 (311)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.58  E-value=2.8  Score=33.88  Aligned_cols=209  Identities=11%  Similarity=0.039  Sum_probs=103.0

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCC
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDG  188 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~  188 (362)
                      .+|-|++..-..+.++.+||.+++....+.+.   ...+++....+   .+++..    ...+..||+.+++.+...  .
T Consensus        28 ~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~---~~~~i~~~~dg---~l~va~----~~gl~~~d~~tg~~~~l~--~   95 (295)
T d2ghsa1          28 ASGTAWWFNILERELHELHLASGRKTVHALPF---MGSALAKISDS---KQLIAS----DDGLFLRDTATGVLTLHA--E   95 (295)
T ss_dssp             TTTEEEEEEGGGTEEEEEETTTTEEEEEECSS---CEEEEEEEETT---EEEEEE----TTEEEEEETTTCCEEEEE--C
T ss_pred             CCCEEEEEECCCCEEEEEECCCCeEEEEECCC---CcEEEEEecCC---CEEEEE----eCccEEeecccceeeEEe--e
Confidence            34544443333467889999999876554322   12334444332   333322    246889999999988765  3


Q ss_pred             CCccccccCCCcccEEE-CCEEEEEecC----CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCe-E
Q 018005          189 FPSMILSQSSHQEGVFY-KGSLYFTTPE----PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNK-L  262 (362)
Q Consensus       189 ~p~~~~~~~~~~~~v~~-~G~ly~~~~~----~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~-L  262 (362)
                      .+. ........++++- +|.+|+-...    ...-..|....++...+....     ..|.     .+...  -+++ |
T Consensus        96 ~~~-~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-----~~~N-----g~~~s--~d~~~l  162 (295)
T d2ghsa1          96 LES-DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-----SIPN-----SICFS--PDGTTG  162 (295)
T ss_dssp             SST-TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-----SSEE-----EEEEC--TTSCEE
T ss_pred             eec-CCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-----CCcc-----eeeec--CCCceE
Confidence            322 1111111222222 6888765431    112333444455554432110     0111     12211  3444 6


Q ss_pred             EEEEEeecCCccceEEEEEECCCCC-----EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEEC
Q 018005          263 YLIGGVGRNGISTTMKLWELGCGGN-----WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNV  337 (362)
Q Consensus       263 ~vv~~~~~~~~~~~i~vw~l~~~~~-----W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~  337 (362)
                      |++..     ....+..+.++....     .......+..          .....-.++..++.|++.....+.|..||+
T Consensus       163 ~~~dt-----~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~----------~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         163 YFVDT-----KVNRLMRVPLDARTGLPTGKAEVFIDSTGI----------KGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             EEEET-----TTCEEEEEEBCTTTCCBSSCCEEEEECTTS----------SSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             EEeec-----ccceeeEeeecccccccccceEEEeccCcc----------cccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            66543     346677777754332     1111112100          011111233445668888777788999999


Q ss_pred             CCCceEEcCCCCCCCCCCCcce
Q 018005          338 ARRTWHWLPSCPSLPHKWSCGF  359 (362)
Q Consensus       338 ~~~~w~~~~~~~~~~~~~~~~~  359 (362)
                      +.+....++- |. .+.-+|.|
T Consensus       228 ~G~~~~~i~l-P~-~~~T~~~F  247 (295)
T d2ghsa1         228 DGNHIARYEV-PG-KQTTCPAF  247 (295)
T ss_dssp             TCCEEEEEEC-SC-SBEEEEEE
T ss_pred             CCcEeeEecC-CC-CceEEEEE
Confidence            8887777643 22 23344554

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.33  E-value=1.7  Score=34.49  Aligned_cols=101  Identities=9%  Similarity=0.045  Sum_probs=51.5

Q ss_pred             CCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeeecCCCeEEEEeCCCCcccccccCCCCccccccCC
Q 018005          119 SSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAKSFPNYAFVYDSTDQSWSKFDIDGFPSMILSQSS  198 (362)
Q Consensus       119 ~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~~~~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~  198 (362)
                      .++.+.+||..+++...+...........+.+.+.+   +.++.++  ....+.+||..++....... ....    ...
T Consensus       156 ~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~--~d~~i~~~~~~~~~~~~~~~-~~~~----h~~  225 (299)
T d1nr0a2         156 QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG---AFLVATD--QSRKVIPYSVANNFELAHTN-SWTF----HTA  225 (299)
T ss_dssp             TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS---SEEEEEE--TTSCEEEEEGGGTTEESCCC-CCCC----CSS
T ss_pred             cccccccccccccccccccccccccccccccccccc---ccccccc--cccccccccccccccccccc-cccc----ccc
Confidence            457888899888775544332222222334443322   2233333  23578899987765433220 1111    001


Q ss_pred             CcccEEE--CCEEEEEecCCcEEEEEEcCCCee
Q 018005          199 HQEGVFY--KGSLYFTTPEPFSIVRFDLENGIW  229 (362)
Q Consensus       199 ~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w  229 (362)
                      .-..+.+  +|...+.++....+..||+.+...
T Consensus       226 ~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~  258 (299)
T d1nr0a2         226 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD  258 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTCTTS
T ss_pred             ccccccccccccceEEEcCCCEEEEEECCCCCc
Confidence            1122222  566655565555789999886543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.62  E-value=3.7  Score=33.51  Aligned_cols=203  Identities=11%  Similarity=0.093  Sum_probs=101.6

Q ss_pred             CCceEEEecCCCCeEEEEeCCcCceeeccCCCCCCccceEEEEeCCCceEEEEEeee--cCCCeEEEEeCCCCccccccc
Q 018005          109 SKGLLCFSLPSSSSFLVCNLVTLSSRTIDFPTYPFDFELLTLVSTPSGYKIFMLFAK--SFPNYAFVYDSTDQSWSKFDI  186 (362)
Q Consensus       109 ~~Gll~~~~~~~~~~~v~NP~t~~w~~lP~~~~~~~~~~~~~~~~~~~ykv~~~~~~--~~~~~~~vy~s~~~~W~~~~~  186 (362)
                      .+|-|++.....++++.+||.+++........ ...-.+++++.++   +++++...  .....+..++..++.......
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~-~~~p~gla~~~dG---~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~  124 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIE  124 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             CCCCEEEEECCCCEEEEEECCCCeEEEEEeCC-CCCeeEEEECCCC---CEEEEecCCCccceeEEEEcCCCceeeeecc
Confidence            34545555444578888999988754432111 1112344454433   34443321  123456677777665543321


Q ss_pred             CCCCccccccCCCcccEEE--CCEEEEEecC------CcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccC
Q 018005          187 DGFPSMILSQSSHQEGVFY--KGSLYFTTPE------PFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEE  258 (362)
Q Consensus       187 ~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~------~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~  258 (362)
                       ....     ....+.+.+  +|.+|+....      ...+..+|++....+.+..+.     ..|.     .+...  -
T Consensus       125 -~~~~-----~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~-----~~pn-----Gia~s--~  186 (319)
T d2dg1a1         125 -DLST-----AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI-----SVAN-----GIALS--T  186 (319)
T ss_dssp             -SSSS-----CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE-----SSEE-----EEEEC--T
T ss_pred             -CCCc-----ccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeecc-----ceee-----eeeec--c
Confidence             1111     111222333  6888876532      134777888766555432110     0222     23321  3


Q ss_pred             CC-eEEEEEEeecCCccceEEEEEECCCCC--EEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEE
Q 018005          259 SN-KLYLIGGVGRNGISTTMKLWELGCGGN--WIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYY  335 (362)
Q Consensus       259 ~G-~L~vv~~~~~~~~~~~i~vw~l~~~~~--W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~y  335 (362)
                      +| .||+...     ....+..|.++.++.  .......+..    ...   .....=.++..++.||+.....+.|.+|
T Consensus       187 dg~~lyvad~-----~~~~I~~~d~~~~g~~~~~~~~~~~~~----~~~---~~~PdGl~vD~~G~l~Va~~~~g~V~~~  254 (319)
T d2dg1a1         187 DEKVLWVTET-----TANRLHRIALEDDGVTIQPFGATIPYY----FTG---HEGPDSCCIDSDDNLYVAMYGQGRVLVF  254 (319)
T ss_dssp             TSSEEEEEEG-----GGTEEEEEEECTTSSSEEEEEEEEEEE----CCS---SSEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             ccceEEEecc-----cCCceEEEEEcCCCceeccccceeeec----cCC---ccceeeeeEcCCCCEEEEEcCCCEEEEE
Confidence            55 4777754     346788888875543  3322222100    000   0011112344456689988778899999


Q ss_pred             ECCCCceEEc
Q 018005          336 NVARRTWHWL  345 (362)
Q Consensus       336 d~~~~~w~~~  345 (362)
                      |++-+....+
T Consensus       255 ~p~G~~l~~i  264 (319)
T d2dg1a1         255 NKRGYPIGQI  264 (319)
T ss_dssp             CTTSCEEEEE
T ss_pred             CCCCcEEEEE
Confidence            9876655555

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.38  E-value=6.6  Score=32.23  Aligned_cols=144  Identities=10%  Similarity=0.167  Sum_probs=74.9

Q ss_pred             CCeEEEEeCCCCcccccccCCCCccccccCCCcccEEE--CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCC
Q 018005          168 PNYAFVYDSTDQSWSKFDIDGFPSMILSQSSHQEGVFY--KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPH  245 (362)
Q Consensus       168 ~~~~~vy~s~~~~W~~~~~~~~p~~~~~~~~~~~~v~~--~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~  245 (362)
                      ...+.+|+..++.+....  .+..+    ...-..+.+  +|.....++....+.++|+.+..+.....-       ...
T Consensus        28 ~~~i~iw~~~~~~~~~~~--~l~gH----~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~-------~~~   94 (371)
T d1k8kc_          28 NHEVHIYEKSGNKWVQVH--ELKEH----NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVI-------LRI   94 (371)
T ss_dssp             SSEEEEEEEETTEEEEEE--EEECC----SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEEC-------CCC
T ss_pred             CCEEEEEECCCCCEEEEE--EecCC----CCCEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccc-------ccc
Confidence            357999999888876554  11110    011122222  566555555555799999998887643211       111


Q ss_pred             cccccceeecccCCCeEEEEEEeecCCccceEEEEEECCCCCEEEEecccHHHHHHhhhccccCCccEEEE-e-eCCEEE
Q 018005          246 ELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCGGNWIEVERVPEMMCRKFMSVCYHNYDHVYCF-W-HQGMIC  323 (362)
Q Consensus       246 ~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~~~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~-~-~~~~i~  323 (362)
                      ...-..+...  -+|+.++++.     ....+.+|.++....+........           .....+.++ . .++..+
T Consensus        95 ~~~v~~i~~~--p~~~~l~~~s-----~d~~i~i~~~~~~~~~~~~~~~~~-----------~~~~~v~~v~~~p~~~~l  156 (371)
T d1k8kc_          95 NRAARCVRWA--PNEKKFAVGS-----GSRVISICYFEQENDWWVCKHIKK-----------PIRSTVLSLDWHPNSVLL  156 (371)
T ss_dssp             SSCEEEEEEC--TTSSEEEEEE-----TTSSEEEEEEETTTTEEEEEEECT-----------TCCSCEEEEEECTTSSEE
T ss_pred             cccccccccc--cccccceeec-----ccCcceeeeeeccccccccccccc-----------ccccccccccccccccce
Confidence            1111122111  4677776665     236789999976665433322210           011223333 2 234444


Q ss_pred             EEeecCCeEEEEECCCCce
Q 018005          324 VCCYTWPEILYYNVARRTW  342 (362)
Q Consensus       324 ~~~~~~~~v~~yd~~~~~w  342 (362)
                      +.+...+.+.+||+..+..
T Consensus       157 ~s~s~D~~v~v~~~~~~~~  175 (371)
T d1k8kc_         157 AAGSCDFKCRIFSAYIKEV  175 (371)
T ss_dssp             EEEETTSCEEEEECCCTTT
T ss_pred             eccccCcEEEEEeeccCcc
Confidence            5454566788898876543

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=86.91  E-value=4.4  Score=32.54  Aligned_cols=110  Identities=11%  Similarity=0.048  Sum_probs=64.0

Q ss_pred             CCEEEEEecCCcEEEEEEcCCCeeecCCCCCcccccCCCCcccccceeecccCCCeEEEEEEeecCCccceEEEEEECCC
Q 018005          206 KGSLYFTTPEPFSIVRFDLENGIWETPNDANDHMTMMLPHELTFFRLVNDGEESNKLYLIGGVGRNGISTTMKLWELGCG  285 (362)
Q Consensus       206 ~G~ly~~~~~~~~i~~~D~~~~~w~~~~~p~~~~~~~~p~~~~~~~lv~~~~~~G~L~vv~~~~~~~~~~~i~vw~l~~~  285 (362)
                      +|.+|+.......|..+|+..+.-....         .+....  .+...  -+|+|+++...     ...+.++.++..
T Consensus        38 dG~l~vt~~~~~~I~~i~p~g~~~~~~~---------~~~~~~--gla~~--~dG~l~v~~~~-----~~~~~~~~~~~~   99 (302)
T d2p4oa1          38 DGTIFVTNHEVGEIVSITPDGNQQIHAT---------VEGKVS--GLAFT--SNGDLVATGWN-----ADSIPVVSLVKS   99 (302)
T ss_dssp             TSCEEEEETTTTEEEEECTTCCEEEEEE---------CSSEEE--EEEEC--TTSCEEEEEEC-----TTSCEEEEEECT
T ss_pred             CCCEEEEeCCCCEEEEEeCCCCEEEEEc---------CCCCcc--eEEEc--CCCCeEEEecC-----CceEEEEEeccc
Confidence            6899988776678999998876433322         232222  23222  68999998762     244455555433


Q ss_pred             C-CEEEEecccHHHHHHhhhccccCCccEEEEeeCCEEEEEeecCCeEEEEECCCCceEE
Q 018005          286 G-NWIEVERVPEMMCRKFMSVCYHNYDHVYCFWHQGMICVCCYTWPEILYYNVARRTWHW  344 (362)
Q Consensus       286 ~-~W~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~yd~~~~~w~~  344 (362)
                      . .-..+...+.           .....-..+..++.+|+.......+..+|+.++.-..
T Consensus       100 ~~~~~~~~~~~~-----------~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~  148 (302)
T d2p4oa1         100 DGTVETLLTLPD-----------AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI  148 (302)
T ss_dssp             TSCEEEEEECTT-----------CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccceeeccccCC-----------ccccceeEEccCCCEEeeccccccceeeeccCCccee
Confidence            2 3444444321           0111112334567888877666789999998875443