Citrus Sinensis ID: 018006

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT
Secondary Structure (PSIPRED)
cccHHHHHHHHcccccccccccHHHHHccccccccccccccEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHccccccccccccccccccccccccHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcHHHHcccccHHHHHHHHHHccEEEccccccEEccHHHHccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
mddgqdfardllpkyfkhnnfSSFIRQLntygfrkvdpeqwefanedfvrgqperlknihrrkpvhshsnqnlhgqgtplteserQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRalqkpglesnfgahlenhdrkrrlpridyfydeaniednpmgtsqivagadsadisssnmEKFEQLESSMTFWENIVQDvgqscfqpnssleldestscadspaisciqlnvdarpkspgidmnsepavtaatepvpskepetattiplqagvndvfweqfltenpgssdaqEVQSERkecdgkknenkpadhgkfwwNMRNVNSLAeqmghltpaert
Flexible Loop (DISEMBL)
MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHrrkpvhshsnqnlhgqgtplteserQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALqkpglesnfgahlenhdrkrrlPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTenpgssdaqeVQSERkecdgkknenkpadhgkfwWNMRNVNSLAeqmghltpaert
Low Complexity Region (SEG)
MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGlkddierlkkekeilllelqrheqerqGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT
Disordered region (IsUnstruct)
********RDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFV*********************************************************************************************************************LPRIDYFYDEAN**********************************MTFWENIVQDVGQSCF*******************ISCIQL************************************IPLQAGVNDVFWEQFL********************************KFWWNMRNV****************
Disordered Region (DISOPRED)
**DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERL***************************************************RHEQERQGFESQMQLLR*******QRQQKMVSFVGRA*********************************************************************************************************************************************************************************************************VNSLA************
Disordered Region (DISEMBL)
MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPN************DSPAISCIQLNVDARPKSPGIDMNS*******************TTIPLQAGVNDVFWEQFLTEN***********************KPADHGKFWWNMRNVNSLAEQMG********
Disordered Region (DISPRO)
MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR***********************QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLEN**************************************************************************************************************************************GVNDVFWEQFLTEN*******************************WWNMR****L**Q**HL******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQNLHGQGTPLTESExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
O49403	401	Heat stress transcription	yes	no	0.947	0.855	0.539	9e-96
Q9FK72	345	Heat stress transcription	no	no	0.820	0.860	0.507	5e-83
Q94J16	440	Heat stress transcription	yes	no	0.953	0.784	0.410	1e-76
Q93VB5	459	Heat stress transcription	no	no	0.947	0.747	0.383	2e-53
Q84T61	506	Heat stress transcription	no	no	0.950	0.679	0.332	2e-46
Q94BZ5	466	Heat stress transcription	no	no	0.845	0.656	0.328	1e-42
Q40152	527	Heat shock factor protein	N/A	no	0.447	0.307	0.477	5e-41
O81821	481	Heat stress transcription	no	no	0.953	0.717	0.319	2e-40
Q6K6S5	475	Heat stress transcription	no	no	0.458	0.349	0.481	3e-40
Q9SCW5	468	Heat stress transcription	no	no	0.458	0.354	0.471	5e-40

>sp|O49403|HFA4A_ARATH Heat stress transcription factor A-4a OS=Arabidopsis thaliana GN=HSFA4A PE=2 SV=1

 Score =  350 bits (898), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 198/367 (53%), Positives = 250/367 (68%), Gaps = 24/367 (6%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +F+RDLLP++FKHNNFSSFIRQLNTYGFRK DPEQWEFAN+DFVRGQP  +KNIHRRKPV
Sbjct: 49  EFSRDLLPRFFKHNNFSSFIRQLNTYGFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPV 108

Query: 66  HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125
           HSHS  NL  Q  PLT+SER  + + IERL KEKE LL EL + ++ER+ FE Q++ L+E
Sbjct: 109 HSHSLPNLQAQLNPLTDSERVRMNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKE 168

Query: 126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHL-ENHDRKRRLPRIDYFYDEANIEDNPM 184
           R Q ME+RQ+ MVSFV + L+KPGL  N    + E ++RKRR PRI++F DE  +E+N  
Sbjct: 169 RLQHMEKRQKTMVSFVSQVLEKPGLALNLSPCVPETNERKRRFPRIEFFPDEPMLEEN-- 226

Query: 185 GTSQIVAGADSADISSSNME-KFEQLESSMTFWENIVQDVGQSCFQPNS--SLELDESTS 241
            T  +V    S   SS   E + EQLESS+  WEN+V D  +S  Q  S  +L++DES++
Sbjct: 227 KTCVVVREEGSTSPSSHTREHQVEQLESSIAIWENLVSDSCESMLQSRSMMTLDVDESST 286

Query: 242 CADSPAISCIQLNVDARPKSPG----IDMNSEPAVTAATEPVPSKEPET--ATTIPLQAG 295
             +SP +SCIQL+VD+R KSP     IDMN EP          SKE  T  A   P  AG
Sbjct: 287 FPESPPLSCIQLSVDSRLKSPPSPRIIDMNCEPD--------GSKEQNTVAAPPPPPVAG 338

Query: 296 VNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGH 355
            ND FW+QF +ENPGS++ +EVQ ERK+   K          K WWN RNVN++ EQ+GH
Sbjct: 339 ANDGFWQQFFSENPGSTEQREVQLERKDDKDKAG----VRTEKCWWNSRNVNAITEQLGH 394

Query: 356 LTPAERT 362
           LT +ER+
Sbjct: 395 LTSSERS 401

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FK72|HFA4C_ARATH Heat stress transcription factor A-4c OS=Arabidopsis thaliana GN=HSFA4C PE=2 SV=1

 Score =  308 bits (788), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 176/347 (50%), Positives = 224/347 (64%), Gaps = 50/347 (14%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +F+RDLLP++FKH NFSSFIRQLNTYGFRKVDPE+WEF N+DFVRG+P  +KNIHRRKPV
Sbjct: 47  EFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPV 106

Query: 66  HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125
           HSHS  NL  Q  PLTESER+ ++D IERLK EKE LL ELQ  EQER+ FE Q+  L++
Sbjct: 107 HSHSLVNLQAQN-PLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKD 165

Query: 126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMG 185
           R Q MEQ Q+ +V++V + L KPGL  N    LENH+R++R             ++N   
Sbjct: 166 RLQHMEQHQKSIVAYVSQVLGKPGLSLN----LENHERRKR-----------RFQEN--- 207

Query: 186 TSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADS 245
                    S   SSS++E+ E+LESS+TFWEN+V +  +     +SS++ D + S   S
Sbjct: 208 ---------SLPPSSSHIEQVEKLESSLTFWENLVSESCEKSGLQSSSMDHDAAES---S 255

Query: 246 PAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQFL 305
            +I       D RPKS  IDMNSEP VT  T P P            + GVND FWEQ L
Sbjct: 256 LSIG------DTRPKSSKIDMNSEPPVT-VTAPAP------------KTGVNDDFWEQCL 296

Query: 306 TENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQ 352
           TENPGS++ QEVQSER++     N NK  +   +WWN  NVN++ E+
Sbjct: 297 TENPGSTEQQEVQSERRDVGNDNNGNKIGNQRTYWWNSGNVNNITEK 343

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). May be involved in general response to auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94J16|HFA4B_ORYSJ Heat stress transcription factor A-4b OS=Oryza sativa subsp. japonica GN=HSFA4B PE=2 SV=1

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/407 (41%), Positives = 233/407 (57%), Gaps = 62/407 (15%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +F RDLLPKYFKHNNFSSF+RQLNTYGFRKVDPEQWEFANEDF++GQ  RLKNIHRRKP+
Sbjct: 46  EFCRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPEQWEFANEDFIKGQRHRLKNIHRRKPI 105

Query: 66  HSHSNQNLHGQGT-PLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124
            SHS+   H QG  PLT++ER+  +++IERLK +   L  ELQ +  ++   E +MQ L 
Sbjct: 106 FSHSS---HSQGAGPLTDNERKDYEEEIERLKSDNAALSSELQNNTLKKLNMEKRMQALE 162

Query: 125 ERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPM 184
           E+  ++E +Q+ ++S+V   ++ PG  S+F    ++H +KRRLP    F+++AN ++N +
Sbjct: 163 EKLFVVEDQQRSLISYVREIVKAPGFLSSFVQQQDHHRKKRRLPIPISFHEDANTQENQI 222

Query: 185 GTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQ------------------- 225
               +     ++   +   E F+++ESS+   EN +++  +                   
Sbjct: 223 MPCDLT----NSPAQTFYRESFDKMESSLNSLENFLREASEEFGNDISYDDGVPGPSSTV 278

Query: 226 ---------------------------SCFQPNSSLELDESTSCADSPAISCIQLNVDAR 258
                                           +SS ++ ESTSCA+SP I  +   VD R
Sbjct: 279 VLTELHSPGESDPRVSSPPTRMRTSSAGAGDSHSSRDVAESTSCAESPPIPQMHSRVDTR 338

Query: 259 PKSPGIDMNSEPAV--TAATEPVPSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDA-Q 315
            K   ID+NSEPAV  T  +   P++EP   T      G ND FW+QFLTE PGSSDA Q
Sbjct: 339 AKVSEIDVNSEPAVTETGPSRDQPAEEPPAVT-----PGANDGFWQQFLTEQPGSSDAHQ 393

Query: 316 EVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 362
           E QSER++   K +E K  D    WW  RNV  + E++G LT  E+T
Sbjct: 394 EAQSERRDGGNKVDEMKSGDRQHLWWGKRNVEQITEKLGLLTSTEKT 440

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q93VB5|HFA4D_ORYSJ Heat stress transcription factor A-4d OS=Oryza sativa subsp. japonica GN=HSFA4D PE=1 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 160/417 (38%), Positives = 214/417 (51%), Gaps = 74/417 (17%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           DF+RDLLPKYFKHNNFSSFIRQLNTYGFRK+DPE+WEFANEDF+RG    LKNIHRRKPV
Sbjct: 54  DFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPERWEFANEDFIRGHTHLLKNIHRRKPV 113

Query: 66  HSHSNQN-LHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124
           HSHS QN ++G   PL ESER+ L+++I RLK EK IL+ +LQR  Q++     QMQ + 
Sbjct: 114 HSHSLQNQING---PLAESERRELEEEINRLKYEKSILVADLQRQNQQQYVINWQMQAME 170

Query: 125 ERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENH-DRKRRLPRIDYFYDEANIEDNP 183
            R   MEQRQ+ +V+ +   LQ+ G   +      +H  +KRR+P++D F D     D  
Sbjct: 171 GRLVAMEQRQKNIVASLCEMLQRRGGAVSSSLLESDHFSKKRRVPKMDLFVD-----DCA 225

Query: 184 MGTSQIV-----AGADSAD----ISSSNMEKFEQLESSMTFWENIVQDVGQSC------- 227
            G  Q V      G D+      +  +N E F+++E S+   E + Q    +C       
Sbjct: 226 AGEEQKVFQFQGIGTDAPAMPPVLPVTNGEAFDRVELSLVSLEKLFQRANDACTAAEEMY 285

Query: 228 ------FQPNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATE-PVP 280
                  +P++++  +E  +      I  +QL     P SP          T  TE P  
Sbjct: 286 SHGHGGTEPSTAICPEEMNTAPMETGID-LQLPASLHPSSPNTGNAHLHLSTELTESPGF 344

Query: 281 SKEPET----------ATTIPLQAGV-------------------------NDVFWEQFL 305
            + PE            T  P QA V                         NDVFWE+FL
Sbjct: 345 VQSPELPMAEIREDIHVTRYPTQADVNSEIASSTDTSQDGTSETEASHGPTNDVFWERFL 404

Query: 306 TENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 362
           TE P S      +SER+E    K++ K       + +   V+ + EQMGHL  AE+T
Sbjct: 405 TETPRSCLD---ESERQE--SPKDDVKAELGCNGFHHREKVDQITEQMGHLASAEQT 456

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  186 bits (473), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 146/439 (33%), Positives = 208/439 (47%), Gaps = 95/439 (21%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FARDLLPKYFKH+NFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK I+RRKP 
Sbjct: 71  EFARDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPT 130

Query: 66  HSHSN-QNLHGQGTPL---TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQ 121
           H ++  Q       P+    E  + G++++IE LK++K +L+ EL R  Q++Q  + Q+Q
Sbjct: 131 HGNNQVQQPQLPAAPVPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQ 190

Query: 122 LLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDR-------KRRLPRIDYFY 174
            L +R Q MEQRQQ+M+SF+ +A+  PG  + F    EN  R       KRRLP+ D   
Sbjct: 191 TLGKRLQGMEQRQQQMMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPKQDGSL 250

Query: 175 D--EANIEDNPMGTSQIVAGADSADISS----SNMEKFEQLESSMTF-WENIV---QDVG 224
           D   A+++   +    ++  A  A +       +  +FE + +S  F  EN +   Q + 
Sbjct: 251 DSESASLDGQIVKYQPMINEAAKAMLRKILKLDSSHRFESMGNSDNFLLENYMPNGQGLD 310

Query: 225 QSCFQPNSSLELDE----------------STSCADS-PAISCIQLNVDARPKSPGIDMN 267
            S    NS + L E                S  C+ S P I C  +  +  PK    +M+
Sbjct: 311 SSSSTRNSGVTLAEVPANSGLPYVATSSGLSAICSTSTPQIQCPVVLDNGIPKEVP-NMS 369

Query: 268 SEPAVTAATEPVPS----------------------------KEPETATTIPLQA----- 294
           + P+V  A  P P+                              PE   ++P +      
Sbjct: 370 AVPSVPKAVAPGPTDINILEFPDLQDIVAEENVDIPGGGFEMPGPEGVFSLPEEGDDSVP 429

Query: 295 ----------------GVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGK 338
                            + D FWEQFL  +P S D  EV       D    + K    G 
Sbjct: 430 IETDEILYNDDTQKLPAIIDSFWEQFLVASPLSVDNDEV-------DSGVLDQKETQQGN 482

Query: 339 FWWNMRNVNSLAEQMGHLT 357
            W    N+ +L EQMG L+
Sbjct: 483 GWTKAENMANLTEQMGLLS 501

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94BZ5|HSFA5_ARATH Heat stress transcription factor A-5 OS=Arabidopsis thaliana GN=HSFA5 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 193/387 (49%), Gaps = 81/387 (20%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +F+R LLP YFKHNNFSSFIRQLNTYGFRK+DPE+WEF N+DF++ Q   LKNIHRRKP+
Sbjct: 57  EFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPI 116

Query: 66  HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125
           HSHS    H   +  T+ ER  L++ +++L +EK  +  +L + +Q++   + Q + + E
Sbjct: 117 HSHS----HPPASS-TDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTE 171

Query: 126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLEN-----HDRKRRLPRIDYFYDEANIE 180
               ME RQ+K+++F+  A++ P    NFG  +E      +++KRRLP ++    +   E
Sbjct: 172 HVDDMENRQKKLLNFLETAIRNPTFVKNFGKKVEQLDISAYNKKRRLPEVE--QSKPPSE 229

Query: 181 DNPMGTSQIVAGADSADISSSNMEKFEQLE-----SSMTFWENIVQDVGQ---------S 226
           D+ +  S   +  +S +I   N     +LE     S M    + +Q   +         S
Sbjct: 230 DSHLDNSSGSSRRESGNIFHQNFSNKLRLELSPADSDMNMVSHSIQSSNEEGASPKGILS 289

Query: 227 CFQPNSS-------------LELDESTSCA------DSPAISCIQLNVDARPKSPGIDMN 267
              PN++             LEL ++ +C       D+  +  +Q  + +  ++ G   +
Sbjct: 290 GGDPNTTLTKREGLPFAPEALELADTGTCPRRLLLNDNTRVETLQQRLTSSEETDG-SFS 348

Query: 268 SEPAVTAATEPVPSKEPE--TATTIPLQ-------------------------------- 293
               +T A+ P+P K       TT+  Q                                
Sbjct: 349 CHLNLTLASAPLPDKTASQIAKTTLKSQELNFNSIETSASEKNRGRQEIAVGGSQANAAP 408

Query: 294 -AGVNDVFWEQFLTENPGSSDAQEVQS 319
            A VNDVFWEQFLTE PGSSD +E  S
Sbjct: 409 PARVNDVFWEQFLTERPGSSDNEEASS 435

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 85/178 (47%), Positives = 117/178 (65%), Gaps = 16/178 (8%)

Query: 3   DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR 62
           D  +FA+DLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK+I RR
Sbjct: 70  DPPEFAKDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRR 129

Query: 63  KPVHSHSNQNLHGQGT---------------PLTESERQGLKDDIERLKKEKEILLLELQ 107
           KP H H+ Q     G                   E  + GL++++ERLK++K +L+ EL 
Sbjct: 130 KPAHGHAQQQQQPHGNAQQQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELV 189

Query: 108 RHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKR 165
           R  Q++Q  ++Q+Q + +R Q ME RQQ+M+SF+ +A+ +PG  + F    +N   KR
Sbjct: 190 RLRQQQQATDNQLQGMVQRLQGMELRQQQMMSFLAKAVNRPGFLAQF-VQQQNESNKR 246

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 205/422 (48%), Gaps = 77/422 (18%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +F++ LLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RG+ + LK+I RRKP 
Sbjct: 61  EFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPS 120

Query: 66  HSHSNQNLHGQGT----PLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQ 121
           H   NQ      +       E  + G+++++ERLK++K +L+ EL R  Q++Q  E+Q+Q
Sbjct: 121 HVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQ 180

Query: 122 LLRERFQLMEQRQQKMVSFVGRALQKPGLESNF--------GAHLENHDRKRRLPRIDYF 173
            + ++ Q+MEQRQQ+M+SF+ +A+Q PG  +             +   ++KRRLP +D  
Sbjct: 181 NVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLP-VD-- 237

Query: 174 YDEANIEDNPMG--TSQIVAGADSADISSSNMEKFEQLESSMTFWENI------------ 219
            ++ N  DN       QIV    S + ++ NM +     S+   +E++            
Sbjct: 238 -EQENRGDNVANGLNRQIVRYQPSINEAAQNMLRQFLNTSTSPRYESVSNNPDSFLLGDV 296

Query: 220 --------------VQDVGQSCFQPN---SSLELDESTSCADSPAISCIQLNVDARPK-- 260
                         V  V  + F PN   S+       S A  P    +Q N+   P   
Sbjct: 297 PSSTSVDNGNPSSRVSGVTLAEFSPNTVQSATNQVPEASLAHHPQAGLVQPNIGQSPAQG 356

Query: 261 -------SPGIDM-NSEPAVTAATEPVPS----------------KEPETATTIPLQAGV 296
                  SP  D+   E       +P+ +                K  E    +P   G+
Sbjct: 357 AAPADSWSPEFDLVGCETDSGECFDPIMAVLDESEGDAISPEGEGKMNELLEGVPKLPGI 416

Query: 297 NDVFWEQFLT-ENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGH 355
            D FWEQF + E P  +D  ++ S   E +    E +P +  +   N + +  L EQMG 
Sbjct: 417 QDPFWEQFFSVELPAIADTDDILSGSVENNDLVLEQEPNEWTR---NEQQMKYLTEQMGL 473

Query: 356 LT 357
           L+
Sbjct: 474 LS 475

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K6S5|HSFA5_ORYSJ Heat stress transcription factor A-5 OS=Oryza sativa subsp. japonica GN=HSFA5 PE=2 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/187 (48%), Positives = 120/187 (64%), Gaps = 21/187 (11%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FA  LLP YFKH+NFSSFIRQLNTYGFRK+DPE+WEFANE F++GQ   LKNIHRRKP+
Sbjct: 56  EFAARLLPAYFKHSNFSSFIRQLNTYGFRKIDPERWEFANEYFIKGQKHLLKNIHRRKPI 115

Query: 66  HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125
           HSHS    H  G  L ++ER   +D+IERL +EK  L  +L + +Q++ G  +Q++ L  
Sbjct: 116 HSHS----HPPGA-LPDNERAIFEDEIERLSREKSNLQADLWKSKQQQSGTMNQIEDLER 170

Query: 126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENH-------DRKRRLPRIDY------ 172
           R   MEQRQ KM++F+ +A + P   +      E         ++KRRLP +DY      
Sbjct: 171 RVLGMEQRQTKMIAFLQQASKNPQFVNKLVKMAEASSIFTDAFNKKRRLPGLDYSIENTE 230

Query: 173 ---FYDE 176
              FYD+
Sbjct: 231 TTSFYDD 237

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SCW5|HFA1E_ARATH Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/176 (47%), Positives = 117/176 (66%), Gaps = 10/176 (5%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FA+  LPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ + LK+I RRKP 
Sbjct: 57  EFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPA 116

Query: 66  ---HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQL 122
                   Q  H       E  + GL++++ERL+++K +L+ EL R  Q++Q  E  +Q 
Sbjct: 117 QVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQN 176

Query: 123 LRERFQLMEQRQQKMVSFVGRALQKPGLESNFG-------AHLENHDRKRRLPRID 171
           + ++  +MEQRQQ+M+SF+ +A+Q PG  + F         H+   ++KRRLP  D
Sbjct: 177 VGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLPVED 232

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
255562528	402	Heat shock factor protein, putative [Ric	0.969	0.873	0.712	1e-143
224114609	406	predicted protein [Populus trichocarpa]	0.986	0.879	0.680	1e-140
224076924	407	predicted protein [Populus trichocarpa]	0.994	0.884	0.662	1e-134
356512543	402	PREDICTED: heat stress transcription fac	0.977	0.880	0.626	1e-126
5821138	408	heat shock factor [Nicotiana tabacum]	0.980	0.870	0.629	1e-123
16118447	402	heat shock transcription factor [Phaseol	0.977	0.880	0.598	1e-122
356525313	402	PREDICTED: heat stress transcription fac	0.977	0.880	0.610	1e-122
359483784	402	PREDICTED: heat stress transcription fac	0.977	0.880	0.606	1e-119
356549216	392	PREDICTED: heat stress transcription fac	0.941	0.869	0.620	1e-117
302398869	420	HSF domain class transcription factor [M	0.955	0.823	0.568	1e-115

>gi|255562528|ref|XP_002522270.1| Heat shock factor protein, putative [Ricinus communis] gi|223538523|gb|EEF40128.1| Heat shock factor protein, putative [Ricinus communis]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 258/362 (71%), Positives = 295/362 (81%), Gaps = 11/362 (3%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FARDLLP++FKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDF+RGQP  +KNIHRRKPV
Sbjct: 47  EFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFIRGQPHLMKNIHRRKPV 106

Query: 66  HSHSNQNLHGQGT-PLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124
           HSHS QNL GQG+ PLTESERQ LKDDIERLK EKE L+LEL+R E++RQGFE QMQ L+
Sbjct: 107 HSHSLQNLQGQGSNPLTESERQSLKDDIERLKHEKEALVLELKRQERQRQGFEMQMQTLK 166

Query: 125 ERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLE-NHDRKRRLPRIDYFYDEANIEDNP 183
           E+ Q ME+RQQ MVSFV R LQKPGL  N  + +E  HDRKRRLPRI YFYDEA+IED  
Sbjct: 167 EKLQQMERRQQTMVSFVARVLQKPGLALNLMSQMEPGHDRKRRLPRIGYFYDEASIED-- 224

Query: 184 MGTSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTS 241
               Q +A   ADS  ++ SN+E+FEQLESS+T WE+I  DV Q+  Q +S++ELDESTS
Sbjct: 225 ---CQTIARENADSNSVALSNVEQFEQLESSLTLWESIRDDV-QTNIQRDSTMELDESTS 280

Query: 242 CADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQA-GVNDVF 300
           CA+SPAISC+ LN+D RPKSP IDMNSEPA  +A EP P KE    T  P  A GVNDVF
Sbjct: 281 CAESPAISCVPLNIDIRPKSPTIDMNSEPAAASAPEPDPPKEQAAGTAPPTVATGVNDVF 340

Query: 301 WEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAE 360
           WEQFLTENPGS+D QEVQSERK+ + +KNE KP+D  KFWWNMRNVN+LAEQMGHLTPAE
Sbjct: 341 WEQFLTENPGSTDTQEVQSERKDSNDRKNEIKPSDQEKFWWNMRNVNNLAEQMGHLTPAE 400

Query: 361 RT 362
           RT
Sbjct: 401 RT 402

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114609|ref|XP_002316809.1| predicted protein [Populus trichocarpa] gi|222859874|gb|EEE97421.1| predicted protein [Populus trichocarpa]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 245/360 (68%), Positives = 288/360 (80%), Gaps = 3/360 (0%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FARDLLP++FKHNNFSSFIRQLNTYGFRK+DPEQWEFANEDF+RGQP  +KNIHRRKPV
Sbjct: 47  EFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPHLMKNIHRRKPV 106

Query: 66  HSHSNQNLHGQGTPL-TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124
           HSHS QNL GQG+ L T+SERQ +KDDIE+LK++K+ L+LELQ+ EQER+GFE Q++ L+
Sbjct: 107 HSHSMQNLQGQGSNLLTDSERQSMKDDIEKLKRDKQALILELQKQEQERKGFEMQIEGLK 166

Query: 125 ERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPM 184
           E+ Q  E  QQ +VSFV R L KPGL  N    LE  DRKRRLPRI Y Y EA+ EDN M
Sbjct: 167 EKLQQTECIQQTIVSFVARVLPKPGLALNIMPQLEGRDRKRRLPRIGYLYSEASNEDNQM 226

Query: 185 GTSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSC 242
            TSQ ++   ADS  ++  NME+FEQLESS+TFWEN+V D+GQ+    NS++E+D+STS 
Sbjct: 227 VTSQALSRENADSNSVALLNMEQFEQLESSLTFWENMVHDIGQTYNYNNSTIEMDDSTSG 286

Query: 243 ADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWE 302
           A SPAISC+ LNVD RPKSPGIDMNSEP+   A EPV  KE    T   +  GVNDVFWE
Sbjct: 287 AQSPAISCVHLNVDFRPKSPGIDMNSEPSAAVAPEPVSPKEQLAGTAPTVATGVNDVFWE 346

Query: 303 QFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 362
           QFLTENPGS++AQEVQSERK+ DG+K E KP D GKFWWNMRNVN+L EQMGHLTPAERT
Sbjct: 347 QFLTENPGSTNAQEVQSERKDSDGRKGEIKPVDPGKFWWNMRNVNNLTEQMGHLTPAERT 406

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076924|ref|XP_002305052.1| predicted protein [Populus trichocarpa] gi|222848016|gb|EEE85563.1| predicted protein [Populus trichocarpa]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 241/364 (66%), Positives = 283/364 (77%), Gaps = 4/364 (1%)

Query: 3   DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR 62
           D  +FARDLLP++FKHNNFSSFIRQLNTYGFRK+DPEQWEFANEDF+RGQP  +KNIHRR
Sbjct: 44  DPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFIRGQPFLMKNIHRR 103

Query: 63  KPVHSHSNQNLHGQGTPL-TESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQ 121
           KPVHSHS QNL GQG+ L T+SERQ +KDDIERLK++KE L+LELQ  EQER+GFE Q++
Sbjct: 104 KPVHSHSLQNLQGQGSNLLTDSERQSMKDDIERLKRDKEALILELQMQEQERKGFEMQIE 163

Query: 122 LLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANI-E 180
            L+E+ Q ME+RQQ MVSFV R + KPGL  N    LE HDRKRRLPRI   + EA+  E
Sbjct: 164 GLKEKLQQMERRQQTMVSFVTRVMPKPGLALNLMPQLEGHDRKRRLPRIGCLHSEASSNE 223

Query: 181 DNPMGTSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDE 238
           DN   TSQ ++   AD    +  NME+F+QLESS+TFWEN+V DV Q+      ++E+DE
Sbjct: 224 DNQTVTSQALSRENADGNSFALLNMEQFDQLESSLTFWENMVNDVVQTHSHNTKTIEMDE 283

Query: 239 STSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVND 298
           STS A+SPAISC QL  D RPK+PGIDMNSEP++    EPV  KE    T   +  GVND
Sbjct: 284 STSGAESPAISCAQLIFDFRPKTPGIDMNSEPSIAVVPEPVSPKEQPAGTAPAVATGVND 343

Query: 299 VFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTP 358
           VFWEQFLTENPGS+D QEVQSERK+ DG+KNE KP D  KFWW+MRNVN+L EQMGHLTP
Sbjct: 344 VFWEQFLTENPGSTDTQEVQSERKDSDGRKNEIKPGDPRKFWWDMRNVNNLTEQMGHLTP 403

Query: 359 AERT 362
           AERT
Sbjct: 404 AERT 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512543|ref|XP_003524978.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/359 (62%), Positives = 273/359 (76%), Gaps = 5/359 (1%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FARDLLP++FKHNNFSSFIRQLNTYGFRKVDPEQWEFAN+DFVRGQP  +KNIHRRKPV
Sbjct: 47  EFARDLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFVRGQPHLMKNIHRRKPV 106

Query: 66  HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125
           HSHS QNL  QG P+ E+ERQ   D+IE+LK +KE LL+ELQ+++ E Q +E QM   ++
Sbjct: 107 HSHSLQNLQAQG-PIGEAERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQMHSSKD 165

Query: 126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMG 185
           R + +EQ QQKMVS V   LQKP +  N     E  DRKRRLPR  +FYDEA++ED  M 
Sbjct: 166 RLEKLEQNQQKMVSSVSHVLQKPVISVNILPLTETMDRKRRLPRSGHFYDEASVED-AME 224

Query: 186 TSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCA 243
           TSQ++    AD+  + + N+E+ +QLESSM FWE IV D+G +  Q  S+++ DESTSCA
Sbjct: 225 TSQMLPRENADNTTVLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSNMDFDESTSCA 284

Query: 244 DSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQ 303
           DSP+ISC QL+V+ RPKSPGIDMNSEP   A  EPV SKE    TT+    GVNDVFWEQ
Sbjct: 285 DSPSISCAQLDVEVRPKSPGIDMNSEPTTAAVPEPVASKEQPAGTTV-AATGVNDVFWEQ 343

Query: 304 FLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 362
           FLTE+PG+S+ QEVQSERKE DG+KNE KP+D  KFWWN  N N+L EQMGH+  AE+T
Sbjct: 344 FLTEDPGASETQEVQSERKEYDGRKNEGKPSDLNKFWWNKWNANNLPEQMGHVGQAEKT 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5821138|dbj|BAA83711.1| heat shock factor [Nicotiana tabacum]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/364 (62%), Positives = 273/364 (75%), Gaps = 9/364 (2%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANED-FVRGQPERLKNIHRRKP 64
           DFARDLLP+YFKHNNFSSFIRQLNTYGFRKVDPE+WEFANED F RGQP  LKNIHRRKP
Sbjct: 47  DFARDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEKWEFANEDNFFRGQPHLLKNIHRRKP 106

Query: 65  VHSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124
           VHSHS QNLHG  +PLTESERQG K+DI++LK E E L L+LQRH+Q+RQG E QMQ+  
Sbjct: 107 VHSHSAQNLHGLSSPLTESERQGYKEDIQKLKHENESLHLDLQRHQQDRQGLELQMQVFT 166

Query: 125 ERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPM 184
           ER Q +E RQ+ M+S + R L KP  + +    L+ +DRKRRLP     Y+E ++ED   
Sbjct: 167 ERVQHVEHRQKTMLSALARMLDKPVTDLSRMPQLQVNDRKRRLPGNSCLYNETDLEDTRA 226

Query: 185 GTSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSC 242
            +S+ +     + + + + N E   QL+SS+TFWEN++QDV Q+  Q N SLELDESTSC
Sbjct: 227 ISSRALTWENMNPSSLLTINAELLNQLDSSLTFWENVLQDVDQAWIQQNCSLELDESTSC 286

Query: 243 ADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEP-VPSKEPETA---TTIPLQAGVND 298
           ADSPAIS  QLNVD  PK+  IDMNSEP   A T P V + E + A   TT  +  GVND
Sbjct: 287 ADSPAISYTQLNVDVGPKASDIDMNSEP--NANTNPEVAAPEDQAAVAGTTTNVPTGVND 344

Query: 299 VFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTP 358
           +FWEQFLTENPGS DA EVQSERK+   KKNE+KP D GKFWWNM++VNSLAEQ+GHLTP
Sbjct: 345 IFWEQFLTENPGSVDASEVQSERKDIGNKKNESKPVDSGKFWWNMKSVNSLAEQLGHLTP 404

Query: 359 AERT 362
           AE+T
Sbjct: 405 AEKT 408

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|16118447|gb|AAL12248.1| heat shock transcription factor [Phaseolus acutifolius]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 215/359 (59%), Positives = 272/359 (75%), Gaps = 5/359 (1%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FARDLLP++FKHNNFSSFIRQLNTYGF+K+DPEQWEFAN+DFVRGQP  +KNIHRRKPV
Sbjct: 47  EFARDLLPRFFKHNNFSSFIRQLNTYGFKKIDPEQWEFANDDFVRGQPHLMKNIHRRKPV 106

Query: 66  HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125
           HSHS QNL  QG PL +SERQG  D IE+LK++KE LL+ELQ+ + E Q +E Q+    +
Sbjct: 107 HSHSLQNLQAQG-PLGDSERQGFTDGIEKLKRDKERLLVELQKFQHEWQTYEIQIHCSND 165

Query: 126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMG 185
           R + +EQ+Q KMVS +   LQKP L  N     E  DRKRRLPR  ++YDE++IED  + 
Sbjct: 166 RLEKLEQKQHKMVSSISHVLQKPVLAVNILPLTETMDRKRRLPRSGHYYDESSIED-AIE 224

Query: 186 TSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCA 243
           TSQ++    A++  + + N+E+ +QLESS+ FWE I  D+G +  Q  S+++ DESTSCA
Sbjct: 225 TSQMLPRENAENTTVLTLNVERLDQLESSVAFWEAIAHDIGDNFAQIQSNMDFDESTSCA 284

Query: 244 DSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQ 303
           DSP+ISC QL+VD RPKS GIDMNSEP   A  +P+ SK+     T+    GVNDVFWEQ
Sbjct: 285 DSPSISCAQLDVDVRPKSSGIDMNSEPTAAAVPDPLASKDQPAGITVA-ATGVNDVFWEQ 343

Query: 304 FLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 362
           FLTE+PG+S+ QEVQSERK+CDG+KNE KP DH KFWWN+RN N+L+E MGH+  AE+T
Sbjct: 344 FLTEDPGASETQEVQSERKDCDGRKNEGKPNDHSKFWWNIRNANNLSEPMGHVGQAEKT 402

Source: Phaseolus acutifolius

Species: Phaseolus acutifolius

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525313|ref|XP_003531269.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/359 (61%), Positives = 270/359 (75%), Gaps = 5/359 (1%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FARDLLP++FKHNNFSSFIRQLNTYGF+KVDPEQWEFAN+DFVRGQP  +KNIHRRKPV
Sbjct: 47  EFARDLLPRFFKHNNFSSFIRQLNTYGFKKVDPEQWEFANDDFVRGQPHLMKNIHRRKPV 106

Query: 66  HSHSNQNLHGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRE 125
           HSHS QNL  QG PL ESERQ   D+IE+LK +KE LL+ELQ+++ E Q +E Q+   ++
Sbjct: 107 HSHSLQNLQAQG-PLGESERQSFTDEIEKLKHDKEQLLVELQKYQHEWQAYEIQIHCSKD 165

Query: 126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPMG 185
           R + +EQ QQ+MVS V   LQKP +  N     E  DRKRRLPR  +FYDE  +ED  + 
Sbjct: 166 RLEKLEQNQQRMVSSVSHVLQKPVISVNILPLTETLDRKRRLPRSGHFYDEDGVED-AIE 224

Query: 186 TSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCA 243
           T Q++    AD   + + N+E+ +QLESSM FWE IV D+G +  Q  SS++LDESTSCA
Sbjct: 225 TCQMLPRENADHTTVLTLNVERLDQLESSMAFWEAIVHDIGDTFVQIQSSMDLDESTSCA 284

Query: 244 DSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWEQ 303
           DSP++SC QL+V+ R KSPGIDMNSEP   A  EPV SKE    TT+    GVNDVFWEQ
Sbjct: 285 DSPSLSCAQLDVEVRHKSPGIDMNSEPTTAAVPEPVASKEQPAGTTVA-ATGVNDVFWEQ 343

Query: 304 FLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAERT 362
           FLTE+PG+S+ +EVQSERK+ +G+KNE KP+D  KFWWN RN N+L EQMGH+  AE+T
Sbjct: 344 FLTEDPGASETREVQSERKDYEGRKNEGKPSDLNKFWWNKRNANNLPEQMGHVGQAEKT 402

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483784|ref|XP_002267171.2| PREDICTED: heat stress transcription factor A-4a-like [Vitis vinifera]

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 219/361 (60%), Positives = 272/361 (75%), Gaps = 7/361 (1%)

Query: 5   QDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKP 64
           +DF+RDLLP++FKHNNFSSFIRQLNTYGFRK+D EQW FANEDF+RGQP  L+NIHRRKP
Sbjct: 46  EDFSRDLLPRFFKHNNFSSFIRQLNTYGFRKIDSEQWAFANEDFIRGQPHLLRNIHRRKP 105

Query: 65  VHSHSNQNLHGQGT--PLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQL 122
           VHSHS QN  GQGT  PL+ES+R+G + DIERLK +K  LLLELQRH+++RQG E QMQ 
Sbjct: 106 VHSHSIQNQKGQGTSCPLSESDREGYRADIERLKHDKGALLLELQRHKEDRQGLELQMQH 165

Query: 123 LRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDN 182
           L++R Q MEQRQQ ++S++ R LQKPGL  +F   +E H+RKRRL   + FYDE+++E+N
Sbjct: 166 LKDRLQHMEQRQQTVISYLARMLQKPGLALSFLPSMETHNRKRRLLTSNCFYDESDVEEN 225

Query: 183 PMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQP-NSSLELDESTS 241
            + TS  V   +  D ++S +E  E LESS++ WE+I+ D+  +C +  NSS+ELDES S
Sbjct: 226 RIATSHTV-NTEKLD-ATSVLELVEFLESSLSSWEDILDDLSSNCSRDVNSSVELDESMS 283

Query: 242 CADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFW 301
           CA+SP IS IQLN+D R KS GIDMN +PA TA  E    KE       P+  GVNDVFW
Sbjct: 284 CAESPGISYIQLNIDTRSKSTGIDMNCKPAATAP-EVTTLKEQVVGAASPVPTGVNDVFW 342

Query: 302 EQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGHLTPAER 361
           EQF TENP SS A+EVQ ERK+ + +KNE K  DHG+FWWN R+ N LA+QMG LTPAER
Sbjct: 343 EQFFTENPDSS-AEEVQLERKDDESRKNEGKHGDHGRFWWNARSANKLADQMGQLTPAER 401

Query: 362 T 362
           T
Sbjct: 402 T 402

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549216|ref|XP_003542993.1| PREDICTED: heat stress transcription factor A-4a-like [Glycine max]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/353 (62%), Positives = 267/353 (75%), Gaps = 12/353 (3%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +F+RDLLPKYFKHNNFSSFIRQLNTYGFRK+DPEQWEFAN+DFVRGQP  LKNIHRRKPV
Sbjct: 48  EFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLLKNIHRRKPV 107

Query: 66  HSHSNQNLHGQG-TPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLR 124
           HSHS QN+ GQG + LTESERQ  KD+IE+LK EKE LL EL+ HEQE + +E Q+Q   
Sbjct: 108 HSHSLQNIQGQGVSSLTESERQSFKDEIEKLKHEKEQLLRELEMHEQEWKMYEVQLQHSN 167

Query: 125 ERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIEDNPM 184
           +R + +E++Q+ +VS V + LQKPG+  N     EN DRKRRLPR   F D+A+IED+ M
Sbjct: 168 DRLEKLEKKQENLVSSVSQVLQKPGIALNLLLLTENMDRKRRLPRSGLFSDDASIEDH-M 226

Query: 185 GTSQIVA--GADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSC 242
            TSQ++    AD A I SS+ E+ + LESSMTFWENI  DVG    Q + +L+ DESTSC
Sbjct: 227 ETSQVLPRENADGASIFSSSTERLDLLESSMTFWENITHDVGDVFVQSHLNLDFDESTSC 286

Query: 243 ADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDVFWE 302
           ADSPAISC+QL V+ +PKS GI+++SEPAV AA +   SKE +   T PL  GVND+FWE
Sbjct: 287 ADSPAISCVQLEVEDQPKSHGINVSSEPAVVAAPDLDASKE-QPVETAPLTTGVNDIFWE 345

Query: 303 QFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVNSLAEQMGH 355
           +FLTENPGSS+ QE QSER++ DG+ N        KFWWN+RNVN+  EQMGH
Sbjct: 346 RFLTENPGSSEMQEAQSEREDSDGRSN-------AKFWWNIRNVNNPPEQMGH 391

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398869|gb|ADL36729.1| HSF domain class transcription factor [Malus x domestica]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/385 (56%), Positives = 264/385 (68%), Gaps = 39/385 (10%)

Query: 6   DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
           +FARDLLPK+FKHNNFSSFIRQLNTYGFRK+DPEQWEFAN+DF+RGQP  +KNIHRRKPV
Sbjct: 47  EFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFIRGQPHLMKNIHRRKPV 106

Query: 66  HSHSNQNL----HGQGTPLTESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQ 121
           HSHS QNL     GQGT L+E+ERQ +KD+I+RLK EKE L +ELQRHEQER G E QMQ
Sbjct: 107 HSHSLQNLQVQGQGQGTSLSEAERQSMKDEIKRLKHEKERLAVELQRHEQERHGLELQMQ 166

Query: 122 LLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPRIDYFYDEANIED 181
            L++R Q ME +QQ M +FV R LQKP + SN    LE  +RKRRLPR  + +D+AN  +
Sbjct: 167 FLKDRLQHMEGQQQTMAAFVARVLQKPEIASNPVPQLEVRERKRRLPRTSWPFDDANNGN 226

Query: 182 NPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTS 241
           N M +S+ V   +        +EK EQLES +TFWE+ + DVG      N+   +DESTS
Sbjct: 227 NQMVSSEAVIRENGG------LEKLEQLESFLTFWEDTIHDVGH-----NNIPLVDESTS 275

Query: 242 CADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPV---------------------- 279
             +S A+S IQLNVD + KSP IDMNSEPA   A EP                       
Sbjct: 276 GNESTAVSSIQLNVDIQSKSPKIDMNSEPAAFVAPEPAASQSSIEKTAGIAASAPTTTLI 335

Query: 280 --PSKEPETATTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHG 337
             PS E    T+     GVND FWEQFLTENPG+S+AQ+V  E K+ DG+ N++KP DHG
Sbjct: 336 QQPSNEKPAGTSTSAPTGVNDGFWEQFLTENPGTSEAQKVPLEGKDSDGRSNDSKPGDHG 395

Query: 338 KFWWNMRNVNSLAEQMGHLTPAERT 362
           + W NMRNVN+L EQMGHLTP E+T
Sbjct: 396 RLWCNMRNVNNLTEQMGHLTPVEKT 420

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.649	0.586	0.462	1.7e-84
TAIR|locus:2172003	345	RHA1 "AT5G45710" [Arabidopsis	0.560	0.588	0.442	6.9e-63
TAIR|locus:2129276	466	AT-HSFA5 "AT4G13980" [Arabidop	0.552	0.429	0.386	3.6e-42
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.535	0.403	0.396	1.3e-38
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.657	0.508	0.347	5.7e-38
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.447	0.334	0.415	1.9e-31
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.820	0.6	0.315	9.7e-29
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.417	0.437	0.401	2.5e-28
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.563	0.502	0.360	2.5e-28
TAIR|locus:2091762	330	HSFC1 "AT3G24520" [Arabidopsis	0.226	0.248	0.602	1.5e-26

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
 Identities = 118/255 (46%), Positives = 159/255 (62%)

Query:   116 FESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHL-ENHDRKRRLPRIDYFY 174
             FE Q++ L+ER Q ME+RQ+ MVSFV + L+KPGL  N    + E ++RKRR PRI++F 
Sbjct:   159 FEMQVKELKERLQHMEKRQKTMVSFVSQVLEKPGLALNLSPCVPETNERKRRFPRIEFFP 218

Query:   175 DEANIEDNPMGTSQIVAGADSADISSSNME-KFEQLESSMTFWENIVQDVGQSCFQPNS- 232
             DE  +E+N   T  +V    S   SS   E + EQLESS+  WEN+V D  +S  Q  S 
Sbjct:   219 DEPMLEENK--TCVVVREEGSTSPSSHTREHQVEQLESSIAIWENLVSDSCESMLQSRSM 276

Query:   233 -SLELDESTSCADSPAISCIQLNVDARPKSPG----IDMNSEPAVTAATEPVPSKEPETA 287
              +L++DES++  +SP +SCIQL+VD+R KSP     IDMN EP  +     V +  P   
Sbjct:   277 MTLDVDESSTFPESPPLSCIQLSVDSRLKSPPSPRIIDMNCEPDGSKEQNTVAAPPP--- 333

Query:   288 TTIPLQAGVNDVFWEQFLTENPGSSDAQEVQSERKECDGKKNENKPADHGKFWWNMRNVN 347
                P  AG ND FW+QF +ENPGS++ +EVQ ERK  D K       +  K WWN RNVN
Sbjct:   334 ---PPVAGANDGFWQQFFSENPGSTEQREVQLERK--DDKDKAGVRTE--KCWWNSRNVN 386

Query:   348 SLAEQMGHLTPAERT 362
             ++ EQ+GHLT +ER+
Sbjct:   387 AITEQLGHLTSSERS 401

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2172003 RHA1 "AT5G45710" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
 Identities = 96/217 (44%), Positives = 130/217 (59%)

Query:     6 DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
             +F+RDLLP++FKH NFSSFIRQLNTYGFRKVDPE+WEF N+DFVRG+P  +KNIHRRKPV
Sbjct:    47 EFSRDLLPRFFKHKNFSSFIRQLNTYGFRKVDPEKWEFLNDDFVRGRPYLMKNIHRRKPV 106

Query:    66 HSHSNQNLHGQGTPLTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRE 125
             HSHS  NL  Q  PLTESER+                             FE Q+  L++
Sbjct:   107 HSHSLVNLQAQN-PLTESERRSMEDQIERLKNEKEGLLAELQNQEQERKEFELQVTTLKD 165

Query:   126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRR------LPRIDYFYDEAN- 178
             R Q MEQ Q+ +V++V + L KPGL  N    LENH+R++R      LP      ++   
Sbjct:   166 RLQHMEQHQKSIVAYVSQVLGKPGLSLN----LENHERRKRRFQENSLPPSSSHIEQVEK 221

Query:   179 IEDNPMGTSQIVA-GADSADISSSNMEKFEQLESSMT 214
             +E +      +V+   + + + SS+M+  +  ESS++
Sbjct:   222 LESSLTFWENLVSESCEKSGLQSSSMDH-DAAESSLS 257

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0009958 "positive gravitropism" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048527 "lateral root development" evidence=RCA;IMP

GO:0048530 "fruit morphogenesis" evidence=IMP

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2129276 AT-HSFA5 "AT4G13980" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
 Identities = 82/212 (38%), Positives = 113/212 (53%)

Query:     6 DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
             +F+R LLP YFKHNNFSSFIRQLNTYGFRK+DPE+WEF N+DF++ Q   LKNIHRRKP+
Sbjct:    57 EFSRLLLPTYFKHNNFSSFIRQLNTYGFRKIDPERWEFLNDDFIKDQKHLLKNIHRRKPI 116

Query:    66 HSHSNQNLHGQGTPLTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQLLRE 125
             HSHS    H   +  T+ ER                               + Q + + E
Sbjct:   117 HSHS----HPPASS-TDQERAVLQEQMDKLSREKAAIEAKLLKFKQQKVVAKHQFEEMTE 171

Query:   126 RFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHD-----RKRRLPRIDYFYDEANIE 180
                 ME RQ+K+++F+  A++ P    NFG  +E  D     +KRRLP ++    +   E
Sbjct:   172 HVDDMENRQKKLLNFLETAIRNPTFVKNFGKKVEQLDISAYNKKRRLPEVEQ--SKPPSE 229

Query:   181 DNPMGTSQIVAGADSADISSSNMEKFEQLESS 212
             D+ +  S   +  +S +I   N     +LE S
Sbjct:   230 DSHLDNSSGSSRRESGNIFHQNFSNKLRLELS 261

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 335 (123.0 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 84/212 (39%), Positives = 118/212 (55%)

Query:     6 DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
             +F++ LLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RG+ + LK+I RRKP 
Sbjct:    61 EFSKVLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPS 120

Query:    66 HSHSNQN-LHGQGTPL---TESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQ 121
             H   NQ     Q + +    E  + G                             E+Q+Q
Sbjct:   121 HVQQNQQQTQVQSSSVGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQ 180

Query:   122 LLRERFQLMEQRQQKMVSFVGRALQKPGL-------ESNFG-AHLENHDRKRRLPRIDYF 173
              + ++ Q+MEQRQQ+M+SF+ +A+Q PG         +N G   +   ++KRRLP +D  
Sbjct:   181 NVGQKVQVMEQRQQQMMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLP-VD-- 237

Query:   174 YDEANIEDNPMG--TSQIVAGADSADISSSNM 203
              ++ N  DN       QIV    S + ++ NM
Sbjct:   238 -EQENRGDNVANGLNRQIVRYQPSINEAAQNM 268

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 90/259 (34%), Positives = 137/259 (52%)

Query:     6 DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
             +FA+  LPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ + LK+I RRKP 
Sbjct:    57 EFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPA 116

Query:    66 HSHSNQN---LHGQGTPLTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQL 122
                  Q     H       E  + G                             E  +Q 
Sbjct:   117 QVQPPQQPQVQHSSVGACVEVGKFGLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQN 176

Query:   123 LRERFQLMEQRQQKMVSFVGRALQKPGLESNFGA-------HLENHDRKRRLPRIDYFYD 175
             + ++  +MEQRQQ+M+SF+ +A+Q PG  + F         H+   ++KRRLP ++   D
Sbjct:   177 VGQKVHVMEQRQQQMMSFLAKAVQSPGFLNQFSQQSNEANQHISESNKKRRLP-VE---D 232

Query:   176 EANIEDNPM-GTS-QIVAGADSA-DISSSNMEKFEQLESSMTFWENIVQDVGQSCFQ--P 230
             + N   + + G S QIV    S  D +++ +++ +Q+ ++ +  E++  + G       P
Sbjct:   233 QMNSGSHGVNGLSRQIVRYQSSMNDATNTMLQQIQQMSNAPSH-ESLSSNNGSFLLGDVP 291

Query:   231 NSSLELDESTSCADSPAIS 249
             NS++  D  +S   SP ++
Sbjct:   292 NSNIS-DNGSSSNGSPEVT 309

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
 Identities = 71/171 (41%), Positives = 100/171 (58%)

Query:     6 DFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRRKPV 65
             +FARDLLPK FKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   L++I RRKP 
Sbjct:    71 EFARDLLPKNFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPA 130

Query:    66 HS----HS-NQNLHGQGTPLT---ESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFE 117
             H     H  +Q+ +GQ + ++   E  + G                             +
Sbjct:   131 HGQGQGHQRSQHSNGQNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTD 190

Query:   118 SQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNF-GAHLENHDRKRRL 167
             +Q+Q + +R Q ME RQQ+++SF+ +A+Q P   S F     + ++  RR+
Sbjct:   191 NQLQTMVQRLQGMENRQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRI 241

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 322 (118.4 bits), Expect = 9.7e-29, P = 9.7e-29
 Identities = 101/320 (31%), Positives = 152/320 (47%)

Query:     3 DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR 62
             D  +F+RDLLPKYFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   LK I RR
Sbjct:    83 DPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKKISRR 142

Query:    63 KPVHSH----SN---QNL-HGQGT-----PLTESERQGXXXXXXXXXXXXXXXXXXXXXX 109
             K V  H    SN   Q L  GQG+        E  + G                      
Sbjct:   143 KSVQGHGSSSSNPQSQQLSQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKL 202

Query:   110 XXXXXGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENHDRKRRLPR 169
                    ++++Q+L +  Q+MEQRQQ+++SF+ +A+Q P   S F    +  D    +  
Sbjct:   203 RQQQQTTDNKLQVLVKHLQVMEQRQQQIMSFLAKAVQNPTFLSQFIQ--KQTDSNMHVTE 260

Query:   170 IDYFYDEANIEDNPMGTSQIVAGADSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQ 229
              +    +  + ++    ++  + + S + S   + K++ L +    W  +  D       
Sbjct:   261 AN---KKRRLREDSTAATESNSHSHSLEASDGQIVKYQPLRNDSMMWNMMKTDDKYPFLD 317

Query:   230 PNSSLELDESTSCADSPAISCIQLNVDARPKSPGIDMNSEPAVTAATEPVPSKEPETATT 289
               SS       +  +   I+  Q    A   S G  ++  P+ T+ + P  +  PET+  
Sbjct:   318 GFSSPNQVSGVTLQEVLPITSGQSQAYASVPS-GQPLSYLPS-TSTSLP-DTIMPETSQI 374

Query:   290 IPL-QAGVNDVFWEQFL-TE 307
               L +  +ND   E F+ TE
Sbjct:   375 PQLTRESINDFPTENFMDTE 394

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 61/152 (40%), Positives = 82/152 (53%)

Query:     3 DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR 62
             D   F+  LLP+YFKH+NFSSFIRQLNTYGFRK+DP++WEFANE F+ GQ   LKNI RR
Sbjct:    75 DSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKIDPDRWEFANEGFLAGQKHLLKNIKRR 134

Query:    63 KPVHSHSNQNLHGQGTPLTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXGFESQMQL 122
             + +    N N  G G    E  + G                             +SQ+  
Sbjct:   135 RNM-GLQNVNQQGSGMSCVEVGQYGFDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAA 193

Query:   123 LRERFQLMEQRQQKMVSFVGRALQKPGLESNF 154
             + +R  + E+RQQ+M++F+ +AL  P     F
Sbjct:   194 MEQRLLVTEKRQQQMMTFLAKALNNPNFVQQF 225

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 83/230 (36%), Positives = 112/230 (48%)

Query:     3 DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR 62
             D Q F+  LLP++FKHNNFSSF+RQLNTYGFRKV+P++WEFANE F+RGQ   LKNI RR
Sbjct:    92 DPQAFSVTLLPRFFKHNNFSSFVRQLNTYGFRKVNPDRWEFANEGFLRGQKHLLKNIRRR 151

Query:    63 KPVHSHSNQNLHGQGTP-------LTESERQGXXXXXXXXXXXXXXXXXXXXXXXXXXXG 115
             K   ++SNQ    Q +          E  R G                            
Sbjct:   152 K-TSNNSNQMQQPQSSEQQSLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQS 210

Query:   116 FESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLESNFGAHLENH-------DRKRRLP 168
              +  + L+ E+ +  E +Q++M+SF+ RA+Q P          E          +KR+ P
Sbjct:   211 TKMYLTLIEEKLKKTESKQKQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEAISKKRQRP 270

Query:   169 RIDYFYDEANIED--NPMGTSQIVAGADSADISSS------NMEKFEQLE 210
              ID    + N+ED  +  G    VA + SA I  S      NM +FE  E
Sbjct:   271 -IDQ--GKRNVEDYGDESGYGNDVAASSSALIGMSQEYTYGNMSEFEMSE 317

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2091762 HSFC1 "AT3G24520" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
 Identities = 50/83 (60%), Positives = 59/83 (71%)

Query:     3 DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQWEFANEDFVRGQPERLKNIHRR 62
             D  DF++ +LP YFKHNNFSSF+RQLNTYGFRKVDP++WEFANE F+RGQ   L NI RR
Sbjct:    48 DPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEHFLRGQKHLLNNIARR 107

Query:    63 KPVHSHSNQNLHGQGTPLTESER 85
             K       Q+L   G  + E ER
Sbjct:   108 KHARGMYGQDLE-DGEIVREIER 129

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49403	HFA4A_ARATH	No assigned EC number	0.5395	0.9475	0.8553	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
smart00415	105	smart00415, HSF, heat shock factor	8e-32
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	2e-31
COG5169	282	COG5169, HSF1, Heat shock transcription factor [Tr	1e-16

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score =  115 bits (290), Expect = 8e-32
 Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 11/73 (15%)

Query: 1   MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDP-----------EQWEFANEDFV 49
           + D ++FA++LLP+YFKHNNFSSF+RQLN YGFRKVDP           +QWEFAN DFV
Sbjct: 33  IWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFV 92

Query: 50  RGQPERLKNIHRR 62
           RGQPE L+NI R+
Sbjct: 93  RGQPELLRNIKRK 105

Length = 105

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score =  114 bits (287), Expect = 2e-31
 Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 2/64 (3%)

Query: 3  DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPE--QWEFANEDFVRGQPERLKNIH 60
          D ++FA+ +LPKYFKHNNFSSF+RQLN YGF KV  +   WEFA+ +F RGQ E L  I 
Sbjct: 32 DPEEFAKQVLPKYFKHNNFSSFVRQLNMYGFHKVKDDRNGWEFAHPNFKRGQKELLSKIK 91

Query: 61 RRKP 64
          RRK 
Sbjct: 92 RRKS 95

Length = 96

>gnl|CDD|227497 COG5169, HSF1, Heat shock transcription factor [Transcription]

 Score = 78.6 bits (194), Expect = 1e-16
 Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 16/120 (13%)

Query: 3   DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV----------DPEQWEFANEDFVRGQ 52
           D ++F + +LP+YFKH NF+SF+RQLN YGF KV          +   WEF N++F  G 
Sbjct: 43  DPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGM 102

Query: 53  PERLKNIHRRK----PVHSHSNQNLHGQGTPLTESERQG--LKDDIERLKKEKEILLLEL 106
            E LK I R+K     V S++          +         L + +  L    + LLL L
Sbjct: 103 IELLKKIKRKKAPSNRVDSNNESKDAMMNIEVENIILPQSELYNSLSSLSNVNQTLLLYL 162

Length = 282

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
KOG0627	304	consensus Heat shock transcription factor [Transcr	99.97
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.85
smart00415	105	HSF heat shock factor.	99.84
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.8
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	89.88
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	87.76
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	86.03
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	84.49
PRK15422	79	septal ring assembly protein ZapB; Provisional	83.24
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	82.8
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	82.65
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	81.93
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.87
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	80.56

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=99.97  E-value=1.2e-31  Score=259.46  Aligned_cols=157  Identities=39%  Similarity=0.623  Sum_probs=137.7

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC--CCcceEeCCCcCcCCccccccccccCCCcCCCCC--CcCCC
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD--PEQWEFANEDFVRGQPERLKNIHRRKPVHSHSNQ--NLHGQ   76 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~--~~~~eF~h~~F~Rg~p~LL~~IkRrk~~~s~s~q--n~~~q   76 (362)
                      |||+.+|++.+||+||||+||+|||||||+||||||+  +++|||+|++|+||+++||++|+||++..+....  .....
T Consensus        43 v~d~~~F~~~~Lp~~FKh~NfsSFvRQLN~YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~  122 (304)
T KOG0627|consen   43 IWNPEEFAKVLLPLYFKHNNFSSFVRQLNMYGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSF  122 (304)
T ss_pred             cCCHHHHHHHHhHHhccccCccceeeeecccceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCCcccccCcchh
Confidence            8999999999999999999999999999999999999  9999999999999999999999999998765431  11100


Q ss_pred             CCCCc-----hhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcch
Q 018006           77 GTPLT-----ESERQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQKPGLE  151 (362)
Q Consensus        77 s~pl~-----e~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~pgfl  151 (362)
                      ...+.     ...+..+..++..|++++..|+.++.+|++++..+..+++.+.+++..++.+|+.++.|++++++.|+|.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  202 (304)
T KOG0627|consen  123 ERQLNLYGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFL  202 (304)
T ss_pred             hhhhhHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccch
Confidence            01111     1234568899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccccc
Q 018006          152 SNFGAH  157 (362)
Q Consensus       152 ~~L~q~  157 (362)
                      .++.+.
T Consensus       203 ~~~~~~  208 (304)
T KOG0627|consen  203 NQAPQR  208 (304)
T ss_pred             hcccch
Confidence            988754

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.85  E-value=1.9e-22  Score=167.27  Aligned_cols=64  Identities=56%  Similarity=1.101  Sum_probs=52.7

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccCCC---------cceEeCCCcCcCCccccccccccCC
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPE---------QWEFANEDFVRGQPERLKNIHRRKP   64 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~~~---------~~eF~h~~F~Rg~p~LL~~IkRrk~   64 (362)
                      |+|+.+|++.|||+||+|+||+||+||||+|||+|+...         .|+|+|++|+||+|+||..|+|+++
T Consensus        30 I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   30 IHDPEEFEKEVLPKYFKHSNFSSFVRQLNMYGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             ES-HHHHHHHTHHHHSST--HHHHHHHHHHTTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred             EeecHHHhhhccccccCccccceeeeEeeeeeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence            789999999999999999999999999999999999743         3999999999999999999999874

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=99.84  E-value=6e-22  Score=165.56  Aligned_cols=62  Identities=74%  Similarity=1.324  Sum_probs=59.3

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccCC-----------CcceEeCCCcCcCCcccccccccc
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDP-----------EQWEFANEDFVRGQPERLKNIHRR   62 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~~-----------~~~eF~h~~F~Rg~p~LL~~IkRr   62 (362)
                      |+|+..|.+.|||+||+|++|+||+||||+|||+|+..           +.|+|+|++|+||+|+||.+|+||
T Consensus        33 I~d~~~f~~~vLp~~Fk~~~~~SF~RqLn~yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       33 IWDPEEFAKNLLPRYFKHNNFSSFVRQLNMYGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             EcCHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence            68999999999999999999999999999999999975           679999999999999999999986

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.80  E-value=4e-21  Score=185.67  Aligned_cols=65  Identities=51%  Similarity=0.944  Sum_probs=60.5

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC-C---------CcceEeCCCcCcCCccccccccccCCC
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-P---------EQWEFANEDFVRGQPERLKNIHRRKPV   65 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~-~---------~~~eF~h~~F~Rg~p~LL~~IkRrk~~   65 (362)
                      |||+++|.+.|||+||||.||+|||||||+|||+||. .         ..|||.|++|++|..++|++|+|+|..
T Consensus        41 I~~~~~F~~~iLpr~FKh~NfaSFVRQLN~YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~  115 (282)
T COG5169          41 ILDPEEFTKVILPRYFKHGNFASFVRQLNKYGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAP  115 (282)
T ss_pred             EeCcchhhhhhhhhhhcccCHHHHHHHHHhcCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcC
Confidence            7999999999999999999999999999999999997 2         249999999999999999999997754

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.88  E-value=1.8  Score=34.75  Aligned_cols=53  Identities=26%  Similarity=0.454  Sum_probs=40.8

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006           88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGR  143 (362)
Q Consensus        88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~  143 (362)
                      +.-+|+.||..+..|..|.+.+++....+..+-..|++....   ||..|-+.|.+
T Consensus        23 LQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk   75 (79)
T COG3074          23 LQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence            456899999999999999999999988888888888876544   55555544444

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=87.76  E-value=3.6  Score=35.82  Aligned_cols=60  Identities=22%  Similarity=0.456  Sum_probs=45.3

Q ss_pred             hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006           83 SERQGLKDDIERLKKEKEILLLELQRHEQERQGF---ESQMQLLRERFQLMEQRQQKMVSFVG  142 (362)
Q Consensus        83 ~e~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l---~~qvq~L~ERL~~~E~~QqqmlsFL~  142 (362)
                      .|...+..++.+|...+..+..||.++-.++..+   ..++..|+..+..++.+.+.++..|.
T Consensus        30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG   92 (120)
T PF12325_consen   30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456677888888888888889998888777444   45577778888888888888876553

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=86.03  E-value=4.4  Score=38.68  Aligned_cols=62  Identities=19%  Similarity=0.340  Sum_probs=43.3

Q ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 018006           85 RQGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQ  146 (362)
Q Consensus        85 ~~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq  146 (362)
                      ++.+..++..|+++...|.....+++......+.++..|++++...+...+.|..+|.+++.
T Consensus        51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666777777777777788888888888776

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=84.49  E-value=7  Score=35.00  Aligned_cols=59  Identities=20%  Similarity=0.376  Sum_probs=48.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006           86 QGLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA  144 (362)
Q Consensus        86 ~~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v  144 (362)
                      ..+..+|..|...+..|..||..++.++..+...++.+.+++..++..+..+...|..+
T Consensus        55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~  113 (140)
T PF10473_consen   55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK  113 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            34677788888888889999999999999999999999999988888887777766554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=83.24  E-value=7.3  Score=31.83  Aligned_cols=51  Identities=27%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 018006           88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMV  138 (362)
Q Consensus        88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqml  138 (362)
                      +.-+|+.||..+..|..|++.++..+..+..+.+.|++....-+.+-+.|+
T Consensus        23 LqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL   73 (79)
T PRK15422         23 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455778888888888888777666666666666666655443333333333

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=82.80  E-value=5.3  Score=44.26  Aligned_cols=61  Identities=31%  Similarity=0.473  Sum_probs=53.3

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018006           87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRALQK  147 (362)
Q Consensus        87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~vlq~  147 (362)
                      .+...+..|+..+..-..+|..++++...+......|.+|+.....+|..++.-+..+++.
T Consensus       562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~  622 (717)
T PF10168_consen  562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQL  622 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677788888888899999999999999999999999999999999999988888763

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=82.65  E-value=5.4  Score=29.06  Aligned_cols=41  Identities=27%  Similarity=0.420  Sum_probs=33.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018006           88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQ  128 (362)
Q Consensus        88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~  128 (362)
                      ++.+-+.||.....|..+-.+|.++++.+..++..|.+.++
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45667788888888888888888888888888888887663

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=81.93  E-value=15  Score=28.64  Aligned_cols=58  Identities=10%  Similarity=0.200  Sum_probs=48.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006           87 GLKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFVGRA  144 (362)
Q Consensus        87 ~l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL~~v  144 (362)
                      .+..++.+++.....+..++..+++.....+.++..+.++|..++..++=+..++..+
T Consensus         3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~iiGa   60 (71)
T PF10779_consen    3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTIIGA   60 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888888888888889999999999999999999999999988887766655543

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.87  E-value=17  Score=28.95  Aligned_cols=35  Identities=11%  Similarity=0.269  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 018006           90 DDIERLKKEKEILLLELQRHEQERQGFESQMQLLR  124 (362)
Q Consensus        90 ~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~  124 (362)
                      .+|.++=..+..|..|+..|+.++..+..+...|+
T Consensus        11 ~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~   45 (72)
T PF06005_consen   11 EKIQQAVETIALLQMENEELKEKNNELKEENEELK   45 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33333333333444444444444333333333333

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=80.56  E-value=24  Score=28.16  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006           88 LKDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVSFV  141 (362)
Q Consensus        88 l~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~QqqmlsFL  141 (362)
                      +.+.|..|+.++..|..+-..+.+++..+..+.+.|++.......+...++.-|
T Consensus        16 aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl   69 (72)
T PF06005_consen   16 AVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL   69 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344555555555555555555555555555566666655444444445555443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
2ldu_A	125	Solution Nmr Structure Of Heat Shock Factor Protein		3e-12
3hts_B	102	Heat Shock Transcription FactorDNA COMPLEX Length =		5e-08
1fym_A	92	Serendipitous Crystal Structure Containing The Heat		7e-08
1fbu_A	90	Heat Shock Transcription Factor Dna Binding Domain		7e-08
1fyk_A	92	Serendipitous Crystal Structure Containing The Heat		9e-08
1hks_A	106	Solution Structure Of The Dna-Binding Domain Of Dro		2e-07
1fbs_A	90	Heat Shock Transcription Factor Dna Binding Domain		4e-07
1fbq_A	90	Heat Shock Transcription Factor Dna Binding Domain		5e-07

>pdb|2LDU|A Chain A, Solution Nmr Structure Of Heat Shock Factor Protein 1 Dna Binding Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr3023c Length = 125

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 12/73 (16%)
Query: 1   MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRK---------VDPEQ--WEFANEDFV 49
            D GQ FA+++LPKYFKHNN +SF+RQLN YGFRK         V PE+   EF +  F+
Sbjct: 49  FDQGQ-FAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFL 107
Query: 50  RGQPERLKNIHRR 62
           RGQ + L+NI R+
Sbjct: 108 RGQEQLLENIKRK 120

>pdb|3HTS|B Chain B, Heat Shock Transcription FactorDNA COMPLEX Length = 102

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 11/51 (21%)
Query: 7  FARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANE 46
          F +++LPKYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE
Sbjct: 49 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 99

>pdb|1FYM|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna In A Tail-To-Tail Orientation Length = 92

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 11/51 (21%)
Query: 7  FARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANE 46
          F +++LPKYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE
Sbjct: 39 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

>pdb|1FBU|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Length = 90

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 11/51 (21%)
Query: 7  FARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANE 46
          F +++LPKYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE
Sbjct: 37 FVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FYK|A Chain A, Serendipitous Crystal Structure Containing The Heat Shock Transcription Factor's Dna Binding Domain And Cognate Dna That Is Translationally Disordered Length = 92

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 11/51 (21%)
Query: 7  FARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANE 46
          F +++LPKYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE
Sbjct: 39 FVQEVLPKYFKHSNFASFVRQLNXYGWHKVQDVKSGSXLSNNDSRWEFENE 89

>pdb|1HKS|A Chain A, Solution Structure Of The Dna-Binding Domain Of Drosophila Heat Shock Transcription Factor Length = 106

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 7   FARDLLPKYFKHNNFSSFIRQLNTYGFRKV----------DPEQWEFANEDFVRGQPERL 56
           FA++LLP  +KHNN +SFIRQLN YGF K+          D ++ EF++  F R  P  L
Sbjct: 41  FAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLL 100
Query: 57  KNIHRR 62
             I R+
Sbjct: 101 DQIKRK 106

>pdb|1FBS|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237a Mutation Length = 90

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 11/51 (21%)
Query: 7  FARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANE 46
          F +++L KYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE
Sbjct: 37 FVQEVLAKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87

>pdb|1FBQ|A Chain A, Heat Shock Transcription Factor Dna Binding Domain Containing The P237k Mutation Length = 90

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 11/51 (21%)
Query: 7  FARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANE 46
          F +++L KYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE
Sbjct: 37 FVQEVLKKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 87
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
2ldu_A	125	Heat shock factor protein 1; structural genomics,	3e-31
1hks_A	106	Heat-shock transcription factor; transcription reg	6e-30
3hts_B	102	Heat shock transcription factor; transcription reg	3e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score =  113 bits (285), Expect = 3e-31
 Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 11/76 (14%)

Query: 3   DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANEDFVRG 51
           D   FA+++LPKYFKHNN +SF+RQLN YGFRKV           + +  EF +  F+RG
Sbjct: 50  DQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRG 109

Query: 52  QPERLKNIHRRKPVHS 67
           Q + L+NI R+    S
Sbjct: 110 QEQLLENIKRKVTSVS 125

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score =  109 bits (275), Expect = 6e-30
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 10/70 (14%)

Query: 3   DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV----------DPEQWEFANEDFVRGQ 52
           +   FA++LLP  +KHNN +SFIRQLN YGF K+          D ++ EF++  F R  
Sbjct: 37  NQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNS 96

Query: 53  PERLKNIHRR 62
           P  L  I R+
Sbjct: 97  PFLLDQIKRK 106

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A Length = 102

 Score = 89.4 bits (222), Expect = 3e-22
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 11/57 (19%)

Query: 3   DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANEDF 48
           + + F +++LPKYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE  
Sbjct: 45  NRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 54/364 (14%), Positives = 100/364 (27%), Gaps = 111/364 (30%)

Query: 66  HSH----SNQNLHGQGTPLTESERQGLKD-------DIER--LKKE--KEILLLELQRHE 110
           H H    + ++ +     L+  E   + +       D+ +  L KE    I++    +  
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---SKDA 60

Query: 111 QERQGFESQMQLLRERFQLMEQRQQKMVS-FVGRALQK---------------PGLESNF 154
                           F  +  +Q++MV  FV   L+                P + +  
Sbjct: 61  VSG---------TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR- 110

Query: 155 GAHLENHDR---------KRRLPRIDYFYD--EANIEDNP--------MGTS--QIVAGA 193
             ++E  DR         K  + R+  +    +A +E  P        +  S    VA  
Sbjct: 111 -MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-- 167

Query: 194 DSADISSSNMEKFEQLESSMTFWENIVQDVGQSCFQPNSSLELDESTSCADSPAISCIQL 253
              D+  S   K +       FW N    +   C  P + LE+ +             Q+
Sbjct: 168 --LDVCLS--YKVQCKMDFKIFWLN----LKN-CNSPETVLEMLQKL---------LYQI 209

Query: 254 --NVDARPK-SPGIDMNSEPAVTAATEPVPSKEPETATTIPLQAGVNDV----FWEQF-- 304
             N  +R   S  I +            + SK  E    +     + +V     W  F  
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-----LLNVQNAKAWNAFNL 264

Query: 305 ------LTENPGSSDAQEVQSERKEC--DGKKNENKPADHGKF--WWNMRNVNSLAEQMG 354
                  T     +D     +                        + + R    L  ++ 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVL 323

Query: 355 HLTP 358
              P
Sbjct: 324 TTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
2ldu_A	125	Heat shock factor protein 1; structural genomics,	99.91
1hks_A	106	Heat-shock transcription factor; transcription reg	99.91
3hts_B	102	Heat shock transcription factor; transcription reg	99.73
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	87.21

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.91  E-value=6.6e-26  Score=194.47  Aligned_cols=65  Identities=52%  Similarity=0.873  Sum_probs=61.5

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC-----------CCcceEeCCCcCcCCccccccccccCCC
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-----------PEQWEFANEDFVRGQPERLKNIHRRKPV   65 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~-----------~~~~eF~h~~F~Rg~p~LL~~IkRrk~~   65 (362)
                      |||+.+|+++|||+||||+||+|||||||+|||+|+.           ++.|+|+||+|+||+|+||.+|+||++.
T Consensus        48 V~d~~~F~~~vLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           48 VFDQGQFAKEVLPKYFKHNNMASFVRQLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             ECCHHHHHHHHHHHHSSCCCHHHHHHHHHHTTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             EeCHHHHHHHHhHHhcCCCcHHHHHHHhcccCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence            7999999999999999999999999999999999983           4679999999999999999999998875

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=99.91  E-value=5.7e-26  Score=189.42  Aligned_cols=62  Identities=45%  Similarity=0.816  Sum_probs=59.4

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC----------CCcceEeCCCcCcCCcccccccccc
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD----------PEQWEFANEDFVRGQPERLKNIHRR   62 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~----------~~~~eF~h~~F~Rg~p~LL~~IkRr   62 (362)
                      |||+.+|+++|||+||||+||+|||||||+|||+|+.          ++.|+|+||+|+||+|+||.+|+||
T Consensus        35 I~d~~~F~~~vLp~yFkh~n~~SFvRQLN~YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           35 IQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             CSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             ECCHHHHHHHHhHHhcCCCcHHHHHHhhhcCCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence            7999999999999999999999999999999999995          4679999999999999999999996

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.73  E-value=2.9e-19  Score=148.57  Aligned_cols=47  Identities=53%  Similarity=1.092  Sum_probs=44.9

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC-----------CCcceEeCCC
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-----------PEQWEFANED   47 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~-----------~~~~eF~h~~   47 (362)
                      |||+.+|+++|||+||||+||+||+||||+|||+|+.           +++|||.|++
T Consensus        43 I~d~~~F~~~VLp~yFkh~nfsSFvRQLN~YGF~Kv~~~~~g~~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           43 VPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENER  100 (102)
T ss_dssp             ESCHHHHHHHTHHHHCSSCCHHHHHHHHHHTTEEECC---------CCSCCEEEEECC
T ss_pred             EcCHHHHHHHHHHHhcCCCcHHHHHHHhhcCCceEeeccccCcccCCCcCCeEecCCC
Confidence            7899999999999999999999999999999999997           6789999986

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=87.21  E-value=4  Score=32.30  Aligned_cols=51  Identities=25%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 018006           89 KDDIERLKKEKEILLLELQRHEQERQGFESQMQLLRERFQLMEQRQQKMVS  139 (362)
Q Consensus        89 ~~eIe~LK~d~~~L~~EL~rlrqqqq~l~~qvq~L~ERL~~~E~~Qqqmls  139 (362)
                      .-+|+.||..+..|..+.+.++.....+..+.+.|++....-+.+.+.|+.
T Consensus        26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg   76 (81)
T 2jee_A           26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346666777777766666665555555666666666655544444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	7e-21
d2htsa_	92	a.4.5.22 (A:) Heat-shock transcription factor {Mil	1e-15

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 84.2 bits (208), Expect = 7e-21
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 10/70 (14%)

Query: 3   DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV----------DPEQWEFANEDFVRGQ 52
           +   FA++LLP  +KHNN +SFIRQLN YGF K+          D ++ EF++  F R  
Sbjct: 37  NQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNS 96

Query: 53  PERLKNIHRR 62
           P  L  I R+
Sbjct: 97  PFLLDQIKRK 106

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

 Score = 69.1 bits (169), Expect = 1e-15
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 11/55 (20%)

Query: 3  DGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKV-----------DPEQWEFANE 46
          + + F +++LPKYFKH+NF+SF+RQLN YG+ KV           +  +WEF NE
Sbjct: 35 NRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENE 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.84
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.61

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.84  E-value=9.7e-23  Score=167.66  Aligned_cols=62  Identities=45%  Similarity=0.816  Sum_probs=58.3

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC----------CCcceEeCCCcCcCCcccccccccc
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD----------PEQWEFANEDFVRGQPERLKNIHRR   62 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~----------~~~~eF~h~~F~Rg~p~LL~~IkRr   62 (362)
                      |+|+.+|+++|||+||+|++|+||+||||+|||+|+.          ++.++|+|++|+||+|+||..|+||
T Consensus        35 I~d~~~f~~~vLp~~Fk~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          35 IQNQAQFAKELLPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             CSCCSTTTTTTSTTTTSCCCHHHHHHHHHHHCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             EcCHHHHHHHHhhhhccccCHHHHHHHHHHCCCEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCC
Confidence            7899999999999999999999999999999999984          3568999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.61  E-value=4.7e-17  Score=130.93  Aligned_cols=48  Identities=52%  Similarity=1.068  Sum_probs=43.8

Q ss_pred             CCChhhhHhhhhhcccCCCCcchhhhcccCCCccccC-----------CCcceEeCCCc
Q 018006            1 MDDGQDFARDLLPKYFKHNNFSSFIRQLNTYGFRKVD-----------PEQWEFANEDF   48 (362)
Q Consensus         1 I~d~~~F~k~vLpk~Fkh~nf~SFvRQLN~YGFrKv~-----------~~~~eF~h~~F   48 (362)
                      |+|+.+|++.|||+||+|+||+||+||||+|||+|+.           ++.|||+|+.+
T Consensus        33 I~d~~~f~~~vLp~~F~~~~~~SF~RQLn~yGF~kv~~~~~~~~~~~~~~~~eF~h~~~   91 (92)
T d2htsa_          33 VPNRERFVQEVLPKYFKHSNFASFVRQLNMYGWHKVQDVKSGSMLSNNDSRWEFENERH   91 (92)
T ss_dssp             ESCHHHHHHHTHHHHCTTCCHHHHHHHHHHTTEECCCCSCTTC----CCCCEEEEESCC
T ss_pred             EeCHHHHHHHHHHHhcCCCCHHHHHHHHHhCCeEEeecCCCCCcccCCCCCEEEecCCC
Confidence            7899999999999999999999999999999999984           35799999843