Citrus Sinensis ID: 018015

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360--
Protein Sequence
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccHHHccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHcccccEEEEEHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccEEEcccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccc
Coil and Loop (DISEMBL)
mfqhhkkpssmnshhdrplcvqgdsglvlttdpkprlrwTVELHERFVDAVtqlggpdkatpkTIMRVMGVKGLTLYHLKSHLqkfrlgkqphkefndhsikdgldlqrntasssgvigRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTlasgetvtpasfkgtignqavpdvgtmkdfcpplnfsqfqdlnlyggdqidhlqqnmdrqssldhgfmqsndniclgkkrpspynggsgtgksplmwsddlrlqdlatppcigpqddpfkgdqiqiappsndldsisdiyetkpvlsgdavssekkfeassaklerpsprrtpistermnpammntggmqqgrnspyg
Flexible Loop (DISEMBL)
mfqhhkkpssmnshhdrplcVQGDSGLVLTTDPKPRLRWTVELHERFVDavtqlggpdkatpktIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKpvlsgdavssekkfeassaklerpsprrtpistermnpammntggmqqgrnspyg
Low Complexity Region (SEG)
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDavssekkfeassakleRPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Disordered region (IsUnstruct)
*******************CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL**************************************************VQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQID***************************************************************************************************************************************************
Disordered Region (DISOPRED)
*************************************RWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQK*************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
***************DRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVL************************RTPISTERMNPAMMNTGG**********
Disordered Region (DISPRO)
**********************************PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ************************GVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA****************************************************************************************************LQ*LATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETK*******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	362	2.2.26 [Sep-21-2011]
Q9SAK5	358	Myb family transcription	yes	no	0.933	0.944	0.604	1e-106
Q8GUN5	413	Protein PHR1-LIKE 1 OS=Ar	no	no	0.414	0.363	0.431	1e-28
Q700D9	255	Putative Myb family trans	no	no	0.187	0.266	0.506	8e-14
Q93WJ9	403	Transcription repressor K	no	no	0.165	0.148	0.566	3e-13
Q9C616	388	Probable transcription fa	no	no	0.165	0.154	0.566	5e-13
Q0J235	532	Probable transcription fa	no	no	0.193	0.131	0.514	6e-13
Q9FJV5	276	Probable transcription fa	no	no	0.154	0.202	0.571	3e-12
Q941I2	322	Probable transcription fa	no	no	0.165	0.186	0.533	4e-12
Q9ZWJ9	664	Two-component response re	no	no	0.232	0.126	0.450	1e-11
Q940D0	690	Two-component response re	no	no	0.149	0.078	0.563	2e-10

>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2

 Score =  384 bits (986), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/382 (60%), Positives = 270/382 (70%), Gaps = 44/382 (11%)

Query: 1   MFQHHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 59
           MF H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct: 1   MF-HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59

Query: 60  ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASS 114
           ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G     +D+QRN ASS
Sbjct: 60  ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASS 119

Query: 115 SGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETV--- 171
           SG++ R+MNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILE+ACQTLA GE +   
Sbjct: 120 SGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA-GENMAAA 178

Query: 172 -----TPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGG--DQI-DHLQQNMDR 223
                    +KG +G+ ++     +     PL+F  FQDLN+YG   DQ+ DH   N   
Sbjct: 179 TAAAAVGGGYKGNLGSSSLS--AAVGPPPHPLSFPPFQDLNIYGNTTDQVLDH--HNFHH 234

Query: 224 QSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDD 281
           Q+  +H  G   ++ NI LGKKRP+P N G+   K  LMWSD  +  DL+    I   DD
Sbjct: 235 QNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLSANQSI---DD 288

Query: 282 PFKGDQIQIAP-PSNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPIST 340
             +  QIQ+A   S DLDS+S+IYE K  LSGD  ++  K       LERPSPRR+P+S 
Sbjct: 289 EHR-IQIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKL------LERPSPRRSPLS- 340

Query: 341 ERMNPAMMNTGGMQQGRNSPYG 362
               P M   GG+ QGRNSP+G
Sbjct: 341 ----PMMNPNGGLIQGRNSPFG 358

Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/167 (43%), Positives = 106/167 (63%), Gaps = 17/167 (10%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92
           K R+RWT ELHE FV+AV QLGG ++ATPK +++++   GLT+YH+KSHLQK+R  + +P
Sbjct: 231 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTARYKP 290

Query: 93  H--------KEFNDHSIKD--GLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRH 142
                    +E    SI+D   LD++ +   +  +       +QMEVQ+RLHEQLE+QR 
Sbjct: 291 ETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQAL------RLQMEVQKRLHEQLEIQRS 344

Query: 143 LQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDVG 189
           LQL+IE QG+Y+Q + EK  +   +  + + AS K   G+ A  +VG
Sbjct: 345 LQLQIEKQGRYLQMMFEKQQKIQDNKSSSSEASPKQCNGSFAEVEVG 391

Transcription factor acting as central integrator of phosphate starvation responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%), Gaps = 5/73 (6%)

Query: 20 CVQGDSGLV-----LTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGL 74
          C + + G++         P PRLRWT ELH  FV AV  LGG  KATPK ++++M VKGL
Sbjct: 4  CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63

Query: 75 TLYHLKSHLQKFR 87
          T+ H+KSHLQ +R
Sbjct: 64 TISHVKSHLQMYR 76

Putative transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K  +K
Sbjct: 220 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTNK 279

Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 43/60 (71%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K   K
Sbjct: 214 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDK 273

Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica GN=RL9 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/70 (51%), Positives = 45/70 (64%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH RFV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K   K
Sbjct: 325 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKSTDK 384

Query: 95  EFNDHSIKDG 104
                   DG
Sbjct: 385 PAASSGPADG 394

Probable transcription factor that regulates abaxial identity during leaf development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
           PR+RWT  LH  FV AV  LGG ++ATPK+++ +M VK LTL H+KSHLQ +R  K
Sbjct: 106 PRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVK 161

Probable transcritpion factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds.

Arabidopsis thaliana (taxid: 3702)

>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 42/60 (70%)

Query: 35  PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHK 94
           PR+RWT  LH  FV AV  LGG ++ATPK+++ +M V+ LTL H+KSHLQ +R  K   K
Sbjct: 165 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSHLQMYRTIKSTEK 224

Probable transcription factor that regulates lateral organ polarity. Plays a role in lateral root formation and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 7/91 (7%)

Query: 22  QGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKS 81
           QGD     ++  KPR+ W+VELH++FV AV QLG  DKA PK I+ +M V GLT  ++ S
Sbjct: 204 QGDDKEDSSSLKKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVAS 262

Query: 82  HLQKFRL------GKQPHKEFNDHSIKDGLD 106
           HLQK+R+      G   H+   +HS   G D
Sbjct: 263 HLQKYRIYLRRLGGVSQHQGNMNHSFMTGQD 293

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/55 (56%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
           KPR+ W+VELH++FV AV QLG  +KA PK I+ +M V GLT  ++ SHLQK+R+
Sbjct: 237 KPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYRI 290

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
147797311	356	hypothetical protein VITISV_013342 [Viti	0.961	0.977	0.772	1e-151
359494672	347	PREDICTED: myb family transcription fact	0.936	0.976	0.772	1e-147
255564111	346	transcription factor, putative [Ricinus	0.936	0.979	0.782	1e-146
356557050	370	PREDICTED: myb family transcription fact	0.953	0.932	0.738	1e-144
56269839	356	myb family transcription factor-related	0.964	0.980	0.758	1e-143
356525732	370	PREDICTED: myb family transcription fact	0.953	0.932	0.730	1e-142
224101311	365	predicted protein [Populus trichocarpa]	0.961	0.953	0.728	1e-139
297736106	329	unnamed protein product [Vitis vinifera]	0.889	0.978	0.726	1e-137
311780285	358	IPN2 [Lotus japonicus]	0.928	0.938	0.715	1e-131
356556674	355	PREDICTED: myb family transcription fact	0.925	0.943	0.670	1e-124

>gi|147797311|emb|CAN76008.1| hypothetical protein VITISV_013342 [Vitis vinifera]

 Score =  540 bits (1392), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 286/370 (77%), Positives = 317/370 (85%), Gaps = 22/370 (5%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF HHKKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HHKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRN ASSSGV+
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVM 118

Query: 119 GRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKG 178
            R+ NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE +   ++KG
Sbjct: 119 SRNTNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GENMALGNYKG 177

Query: 179 TIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNI 238
            IGNQ VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD GF+Q+ +N+
Sbjct: 178 -IGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD-GFIQNTENM 232

Query: 239 CLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIAPPS--- 294
           CLGKKRPSPY   SG+GK+PL+WSDDLR+Q+L T   C+G QDDPFKGDQIQIAPPS   
Sbjct: 233 CLGKKRPSPY---SGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQIQIAPPSMDR 289

Query: 295 -NDLDSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMNPAMMNTGG 352
             D+DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMNP M+N G 
Sbjct: 290 GADMDSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMNP-MINAGA 347

Query: 353 MQQGRNSPYG 362
           M QGR+S YG
Sbjct: 348 MPQGRSS-YG 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494672|ref|XP_002265800.2| PREDICTED: myb family transcription factor APL [Vitis vinifera]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 278/360 (77%), Positives = 308/360 (85%), Gaps = 21/360 (5%)

Query: 11  MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
           MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG
Sbjct: 1   MNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 59

Query: 71  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVIGRSMNEMQME 128
           VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRN ASSSGV+ R+ NEMQME
Sbjct: 60  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVMSRNTNEMQME 119

Query: 129 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDV 188
           VQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE +   ++KG IGNQ VPD+
Sbjct: 120 VQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GENMALGNYKG-IGNQGVPDM 177

Query: 189 GTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPY 248
           G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD GF+Q+ +N+CLGKKRPSPY
Sbjct: 178 GAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD-GFIQNTENMCLGKKRPSPY 233

Query: 249 NGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIAPPS----NDLDSISDI 303
              SG+GK+PL+WSDDLR+Q+L T   C+G QDDPFKGDQIQIAPPS     D+DSISDI
Sbjct: 234 ---SGSGKNPLIWSDDLRMQELGTAASCLGSQDDPFKGDQIQIAPPSMDRGADMDSISDI 290

Query: 304 YETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG 362
           YETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMNP M+N G M QGR+S YG
Sbjct: 291 YETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMNP-MINAGAMPQGRSS-YG 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564111|ref|XP_002523053.1| transcription factor, putative [Ricinus communis] gi|223537710|gb|EEF39332.1| transcription factor, putative [Ricinus communis]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 281/359 (78%), Positives = 310/359 (86%), Gaps = 20/359 (5%)

Query: 11  MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
           MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG
Sbjct: 1   MNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 59

Query: 71  VKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG--LDLQRNTASSSGVIGRSMNEMQME 128
           VKGLTLYHLKSHLQKFRLGKQPHKEF+D SIKDG  LDLQR+ AS+S ++GRSMNEMQME
Sbjct: 60  VKGLTLYHLKSHLQKFRLGKQPHKEFSDPSIKDGPALDLQRSAASTSAMMGRSMNEMQME 119

Query: 129 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQAVPDV 188
           VQRRLHEQLEVQRHLQLRIEA GKYMQ++LEKA QTLA GE +   S+KG IGNQ VPD+
Sbjct: 120 VQRRLHEQLEVQRHLQLRIEAHGKYMQNMLEKAYQTLA-GENMASGSYKG-IGNQGVPDL 177

Query: 189 GTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNICLGKKRPSPY 248
           G MKDF  PLNF QFQDLN+YGGDQ+D LQQNMDR  SLD GFM +ND+ICLGKKR SPY
Sbjct: 178 GAMKDFG-PLNFPQFQDLNIYGGDQLD-LQQNMDR-PSLD-GFMPNNDHICLGKKRSSPY 233

Query: 249 NGGSGTGKSPLMWSDDLRLQDLATPP-CIGPQDDPFKGDQIQIAPPS----NDLDSISDI 303
              SG+GKSPL+WSDDLRLQDL + P C+GP DD FK DQIQIAPPS     DLDSISDI
Sbjct: 234 ---SGSGKSPLIWSDDLRLQDLGSAPTCLGPPDDLFKSDQIQIAPPSMDRGTDLDSISDI 290

Query: 304 YETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGMQQGRNSPYG 362
           YETKP+L GDA+  EKKF+AS+ KLERPSPRR P+ T+RM+P M+N+G M Q RNSP+G
Sbjct: 291 YETKPMLQGDAM-GEKKFDAST-KLERPSPRRAPLPTDRMSP-MINSGAMPQDRNSPFG 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557050|ref|XP_003546831.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 277/375 (73%), Positives = 310/375 (82%), Gaps = 30/375 (8%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVIGRSMN 123
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRNTASSS +IGR+MN
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNTASSSAMIGRNMN 126

Query: 124 EMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPAS--FKGTI- 180
           EMQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA GE +  A+   KG I 
Sbjct: 127 EMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLA-GENMASAATNLKGAIV 185

Query: 181 -GNQAVPDVG-TMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLDHGFMQSNDN 237
             +Q +PD+G  MK+F  PL FS FQDL N+YGGDQID LQQNM++   LDHGFM  N+ 
Sbjct: 186 PHHQGIPDMGVVMKEFGSPLGFSSFQDLENIYGGDQID-LQQNMEK-PPLDHGFMPINET 243

Query: 238 ICLGKKRP-SPYNGGSGTGKSPLMWSDDLRLQDLATPP--CIGPQDDPFKGDQIQIAPP- 293
           +CLGKKR  +PY   SG+GKSPL+WSDDLRLQDL  P   C+GPQDDPFKGDQIQIAPP 
Sbjct: 244 LCLGKKRSNNPY---SGSGKSPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQIQIAPPG 300

Query: 294 ------SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAM 347
                 S D+D +S+IY++KPVL     S EKKF+ASS KLERPSPRR P+  ERM+P M
Sbjct: 301 SLDRGASTDIDPMSEIYDSKPVLQ----SEEKKFDASSMKLERPSPRRAPLQAERMSP-M 355

Query: 348 MNTGGMQQGRNSPYG 362
           ++TG M QGR SP+G
Sbjct: 356 ISTGTMAQGRGSPFG 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|56269839|gb|AAV85474.1| myb family transcription factor-related protein [Populus tomentosa]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 280/369 (75%), Positives = 314/369 (85%), Gaps = 20/369 (5%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF H KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HTKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQP K+F+DHSIKD   LDLQR+ ASSSG++
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPLKDFSDHSIKDASALDLQRSAASSSGMM 118

Query: 119 GRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKG 178
            RSMNEMQMEVQRRLHEQLEVQRHLQLR EAQGKY+QS+LEKACQTLA  + +   S+KG
Sbjct: 119 SRSMNEMQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQTLAGDQNLASGSYKG 178

Query: 179 TIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNI 238
            +GNQ +P +G MK+F   LNF  FQDLN+YGGDQ+D LQ NMDR  SLD GFM +NDNI
Sbjct: 179 -LGNQGIPGMGAMKEFG-SLNFPAFQDLNIYGGDQLD-LQHNMDR-PSLD-GFMANNDNI 233

Query: 239 CLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLAT-PPCIGPQDDPFKGDQIQIAPPS--- 294
           CLGKKRPSPY+   G+GKSPL+W DDLRLQDL + P C+ PQDDPFKGDQIQ+APPS   
Sbjct: 234 CLGKKRPSPYD---GSGKSPLIWPDDLRLQDLGSGPACLEPQDDPFKGDQIQMAPPSMDR 290

Query: 295 -NDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGGM 353
             DLDSISD+YE KP L GD +  EKKFEA SAKL+RPSPRR+P++ ERM+P M+NTG M
Sbjct: 291 GTDLDSISDMYEMKPALQGDGL-DEKKFEA-SAKLKRPSPRRSPLAAERMSP-MINTGAM 347

Query: 354 QQGRNSPYG 362
            QGRNSP+G
Sbjct: 348 PQGRNSPFG 356

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525732|ref|XP_003531477.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/375 (73%), Positives = 311/375 (82%), Gaps = 30/375 (8%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVIGRSMN 123
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHK+FNDHSIKD   L+LQRNTASSS +IGR+MN
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDASALELQRNTASSSAMIGRNMN 126

Query: 124 EMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPAS--FKGTI- 180
           EMQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA GE +  A+   K  I 
Sbjct: 127 EMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLA-GENMASAATNLKSAIV 185

Query: 181 -GNQAVPDVG-TMKDFCPPLNFSQFQDL-NLYGGDQIDHLQQNMDRQSSLDHGFMQSNDN 237
             +Q +PD+G  MK+F  PL FS FQDL N+YGG+QID LQQNM++  SLDHGFM  N++
Sbjct: 186 PHHQGIPDMGVVMKEFGSPLGFSSFQDLENIYGGNQID-LQQNMEK-PSLDHGFMPINES 243

Query: 238 ICLGKKRP-SPYNGGSGTGKSPLMWSDDLRLQDLATPP--CIGPQDDPFKGDQIQIAPP- 293
           +CLGKKR  +PY   SG+GK+PL+WSDDLRLQDL  P   C+GPQDDPFKGDQIQIAPP 
Sbjct: 244 LCLGKKRSNNPY---SGSGKNPLIWSDDLRLQDLGGPASSCLGPQDDPFKGDQIQIAPPG 300

Query: 294 ------SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAM 347
                 S D+D +S+IY++KPVL     S EKKF+ASS KLERPSPRR P+  ERM+P M
Sbjct: 301 SLDRGASTDIDPMSEIYDSKPVLQ----SEEKKFDASSMKLERPSPRRAPLQPERMSP-M 355

Query: 348 MNTGGMQQGRNSPYG 362
           ++TG M QGR SP+G
Sbjct: 356 ISTGTMAQGRGSPFG 370

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101311|ref|XP_002312227.1| predicted protein [Populus trichocarpa] gi|222852047|gb|EEE89594.1| predicted protein [Populus trichocarpa]

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 276/379 (72%), Positives = 306/379 (80%), Gaps = 31/379 (8%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF H KKPS+MNSH DRP+CVQ DSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDKA
Sbjct: 1   MF-HTKKPSTMNSH-DRPMCVQ-DSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKA 57

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ HKEFNDHSIKD   LDLQR+ ASSSG+I
Sbjct: 58  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQLHKEFNDHSIKDASALDLQRSAASSSGMI 117

Query: 119 GRSMNE---------MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGE 169
            RSMN+         MQMEVQRRLHEQLEVQRHLQLR EAQGKY+QS+LEKACQTLA  +
Sbjct: 118 SRSMNDNSHMIYAIRMQMEVQRRLHEQLEVQRHLQLRTEAQGKYIQSLLEKACQTLAGDQ 177

Query: 170 TVTPASFKGTIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDH 229
            +   S+KG IGNQ VPD+G MKDF  PLNF  FQDLN+YG  Q+D L  NMDR  SLD 
Sbjct: 178 DLASGSYKG-IGNQGVPDMGAMKDFG-PLNFPPFQDLNIYGSGQLD-LLHNMDR-PSLD- 232

Query: 230 GFMQSN-DNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATP-PCIGPQDDPFKGDQ 287
           GFM +N D+ICLGKKR +PY   +G+GKSPL+WSDDLRLQDL +   C+GPQDDP KGDQ
Sbjct: 233 GFMSNNHDDICLGKKRTNPY---AGSGKSPLIWSDDLRLQDLGSGLSCLGPQDDPLKGDQ 289

Query: 288 IQIAPP----SNDLDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERM 343
           IQIAPP      DLDS+S +Y TKPV  GDA+  EKK EA SAK ERPSPRR P++ +RM
Sbjct: 290 IQIAPPLMDSGTDLDSLSGLYGTKPVHQGDAL-DEKKLEA-SAKTERPSPRRAPLAADRM 347

Query: 344 NPAMMNTGGMQQGRNSPYG 362
           +P M+NTG M QGRNSP+G
Sbjct: 348 SP-MINTGVMPQGRNSPFG 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736106|emb|CBI24144.3| unnamed protein product [Vitis vinifera]

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/369 (72%), Positives = 295/369 (79%), Gaps = 47/369 (12%)

Query: 1   MFQHHKKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 60
           MF HHKKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA
Sbjct: 1   MF-HHKKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKA 58

Query: 61  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD--GLDLQRNTASSSGVI 118
           TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKD   L+LQRN ASSSGV+
Sbjct: 59  TPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNIASSSGVM 118

Query: 119 GRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKG 178
            R+ NEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQ+ILEKACQTLA GE +   ++KG
Sbjct: 119 SRNTNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQTILEKACQTLA-GENMALGNYKG 177

Query: 179 TIGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNI 238
            IGNQ VPD+G MKDF   LNF   QDLN+YGGDQ+D LQQ+MDR  SLD GF+Q+ +N+
Sbjct: 178 -IGNQGVPDMGAMKDFGSSLNFPSLQDLNIYGGDQLD-LQQSMDR--SLD-GFIQNTENM 232

Query: 239 CLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGDQIQIAPPS---- 294
           CLGKKRPSPY+G                             +DPFKGDQIQIAPPS    
Sbjct: 233 CLGKKRPSPYSG-----------------------------NDPFKGDQIQIAPPSMDRG 263

Query: 295 NDLDSISDIYETKPVLSGDAVSSEKKFEAS-SAKLERPSPRRTPISTERMNPAMMNTGGM 353
            D+DSISDIYETKP+LSGD +  EKKF+ S SAKL RPSPRR P+ T+RMNP M+N G M
Sbjct: 264 ADMDSISDIYETKPILSGDPM-GEKKFDGSGSAKLGRPSPRRAPLPTDRMNP-MINAGAM 321

Query: 354 QQGRNSPYG 362
            QGR+S YG
Sbjct: 322 PQGRSS-YG 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|311780285|gb|ADQ08683.1| IPN2 [Lotus japonicus]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 266/372 (71%), Positives = 299/372 (80%), Gaps = 36/372 (9%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DRP+CVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASSSGVIGR 120
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG     L+LQRNTASSS +IGR
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASALELQRNTASSSAMIGR 126

Query: 121 SMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTI 180
           +MNEMQ+EVQRRLHEQLEVQ+HLQLRIEAQGKYMQSILEKA QTLA     + A+    I
Sbjct: 127 NMNEMQIEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNLKGI 186

Query: 181 GNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDH--LQQNMDRQSSLDHGFMQSN-DN 237
           G Q +PD+G MK+F  PL FS FQDL+LYGG   D   LQQNM++   LD GFM  N +N
Sbjct: 187 GPQTIPDMGIMKEFGSPLGFS-FQDLDLYGGGGGDQLELQQNMEK-PPLD-GFMPMNHEN 243

Query: 238 ICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQDDPFKGD---QIQIAPPS 294
           +CLGKKRP+PY+G +  GKSPLMWSDDLRLQDL +  C+  QDDPFKGD   QIQIAPPS
Sbjct: 244 LCLGKKRPNPYSGNN--GKSPLMWSDDLRLQDLGS--CL--QDDPFKGDHHHQIQIAPPS 297

Query: 295 ND----LDSISDIYETKPVLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNT 350
            D    +D +S+IY++KP         EKKF+A S KLERPSPRR P+  ERM+P M+ T
Sbjct: 298 LDRGTEMDPMSEIYDSKP--------EEKKFDA-SMKLERPSPRRAPLG-ERMSP-MITT 346

Query: 351 GGMQQGRNSPYG 362
           G M QGR+SP+G
Sbjct: 347 GTMAQGRSSPFG 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556674|ref|XP_003546648.1| PREDICTED: myb family transcription factor APL-like [Glycine max]

 Score =  449 bits (1155), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/370 (67%), Positives = 290/370 (78%), Gaps = 35/370 (9%)

Query: 6   KKPSSMNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTI 65
           KKPS+MNSH DR +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDKATPKTI
Sbjct: 8   KKPSTMNSH-DRSMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDKATPKTI 66

Query: 66  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASSSGVIGR 120
           MRVMGVKGLTLYHLKSHLQKFRLGKQPHK+FNDHSIKDG     L+LQRN  SSS +IGR
Sbjct: 67  MRVMGVKGLTLYHLKSHLQKFRLGKQPHKDFNDHSIKDGMRASALELQRNIGSSSAMIGR 126

Query: 121 SMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTI 180
           +MNEMQMEVQRRLHEQLEVQ++LQLRIEAQGKYMQSILEKA  TLA GE +   + KG  
Sbjct: 127 NMNEMQMEVQRRLHEQLEVQKNLQLRIEAQGKYMQSILEKAYHTLA-GENMA-TNMKGMG 184

Query: 181 GNQAVPDVGTMKDFCPPLNFSQFQDLNLYG-GDQIDHLQQNMDRQSSLDHGFMQSNDN-- 237
                 ++G MK+F   LN+  FQDLN+Y  GDQ             LD GFM SN+N  
Sbjct: 185 APLGTTEMGVMKEFG-SLNYPSFQDLNIYASGDQ------------QLD-GFMPSNNNNE 230

Query: 238 -ICLGKKRPS-PYNGGSGTGKSPLMWSDDLRLQDLATP-PCIGPQDDPFKGD-QIQIAPP 293
            + +GKKRP+ PY   SG+GKSPL+WSDDLRLQDL T   CI PQDDPFKGD ++QI+PP
Sbjct: 231 TLFVGKKRPNCPY---SGSGKSPLIWSDDLRLQDLGTASSCISPQDDPFKGDHKVQISPP 287

Query: 294 SNDLDSISDIYETKP-VLSGDAVSSEKKFEASSAKLERPSPRRTPISTERMNPAMMNTGG 352
           S D D IS+IY+TKP +L G++VS + KF+A S K+ERPSP+R+P+  +R +P M+N+  
Sbjct: 288 SMDSDPISEIYDTKPMILHGESVSDQNKFDA-SMKVERPSPKRSPLQPDRTSP-MINSSS 345

Query: 353 MQQGRNSPYG 362
           + QGR+SP+G
Sbjct: 346 VAQGRSSPFG 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	362
TAIR|locus:2206415	358	APL "ALTERED PHLOEM DEVELOPMEN	0.930	0.941	0.605	7.1e-100
TAIR|locus:2119425	295	UNE16 "unfertilized embryo sac	0.342	0.420	0.625	1.8e-52
TAIR|locus:2087740	235	AT3G12730 [Arabidopsis thalian	0.386	0.595	0.72	1.5e-51
TAIR|locus:2093726	298	AT3G24120 [Arabidopsis thalian	0.428	0.520	0.529	8e-37
TAIR|locus:2045761	286	AT2G01060 [Arabidopsis thalian	0.389	0.493	0.578	4.4e-36
TAIR|locus:2139865	409	PHR1 "phosphate starvation res	0.461	0.408	0.441	4.9e-30
TAIR|locus:2095933	394	MYR2 [Arabidopsis thaliana (ta	0.395	0.362	0.477	1.3e-29
TAIR|locus:2172394	402	MYR1 "myb-related protein 1" [	0.397	0.358	0.480	2.7e-29
TAIR|locus:2089260	449	AT3G13040 [Arabidopsis thalian	0.361	0.291	0.514	2.7e-29
TAIR|locus:2148720	413	PHL1 "AT5G29000" [Arabidopsis	0.483	0.423	0.416	1.2e-28

TAIR|locus:2206415 APL "ALTERED PHLOEM DEVELOPMENT" [Arabidopsis thaliana (taxid:3702)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 232/383 (60%), Positives = 269/383 (70%)

Query:     1 MFQHHKKPSSMN-SHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDK 59
             MF H KKPSSMN S+ +R +CVQGDSGLVLTTDPKPRLRWTVELHERFVDAV QLGGPDK
Sbjct:     1 MF-HAKKPSSMNGSYENRAMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVAQLGGPDK 59

Query:    60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDG-----LDLQRNTASS 114
             ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKE+ DHS K+G     +D+QRN ASS
Sbjct:    60 ATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEYGDHSTKEGSRASAMDIQRNVASS 119

Query:   115 SGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPA 174
             SG++ R+MNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILE+ACQTLA GE +  A
Sbjct:   120 SGMMSRNMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERACQTLA-GENMAAA 178

Query:   175 S--------FKGTIGNQAVPD-VGTMKDFCPPLNFSQFQDLNLYGG--DQI-DHLQQNMD 222
             +        +KG +G+ ++   VG       PL+F  FQDLN+YG   DQ+ DH   N  
Sbjct:   179 TAAAAVGGGYKGNLGSSSLSAAVGPPPH---PLSFPPFQDLNIYGNTTDQVLDH--HNFH 233

Query:   223 RQSSLDH--GFMQSNDNICLGKKRPSPYNGGSGTGKSPLMWSDDLRLQDLATPPCIGPQD 280
              Q+  +H  G   ++ NI LGKKRP+P N G+   K  LMWSD  +  DL+    I   D
Sbjct:   234 HQNIENHFTGNNAADTNIYLGKKRPNP-NFGNDVRKGLLMWSD--QDHDLSANQSI---D 287

Query:   281 DPFKGDQIQIAPP-SNDLDSISDIYETKPVLSGDXXXXXXXXXXXXXXXXRPSPRRTPIS 339
             D  +  QIQ+A   S DLDS+S+IYE K  LSGD                RPSPRR+P+S
Sbjct:   288 DEHR-IQIQMATHVSTDLDSLSEIYERKSGLSGDEGNNGGKLLE------RPSPRRSPLS 340

Query:   340 TERMNPAMMNTGGMQQGRNSPYG 362
                MNP     GG+ QGRNSP+G
Sbjct:   341 P-MMNP----NGGLIQGRNSPFG 358

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010088 "phloem development" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2119425 UNE16 "unfertilized embryo sac 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 1.8e-52, Sum P(2) = 1.8e-52
 Identities = 87/139 (62%), Positives = 100/139 (71%)

Query:    24 DSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHL 83
             D+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSHL
Sbjct:    27 DACLVLTTDPKPRLRWTSELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHL 86

Query:    84 QKFRLGKQPHKEFNDHS-----IKDGLDLQRNTASSSGVIGRSMNEM---------QMEV 129
             QKFRLG+Q  KE  D+S     + +  D   ++ SS  +  +  NE          QMEV
Sbjct:    87 QKFRLGRQSCKESIDNSKDVSCVAESQDTGSSSTSSLRLAAQEQNESYQVTEALRAQMEV 146

Query:   130 QRRLHEQLEVQRHLQLRIE 148
             QRRLHEQLE  + +Q R++
Sbjct:   147 QRRLHEQLEYTQ-VQRRLQ 164

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009567 "double fertilization forming a zygote and endosperm" evidence=IMP

TAIR|locus:2087740 AT3G12730 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 108/150 (72%), Positives = 126/150 (84%)

Query:    25 SGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQ 84
             SGLVLTTDPKPRLRWT ELHERFVDAVT LGGP+KATPKTIMRVMGVKGLTLYHLKSHLQ
Sbjct:    14 SGLVLTTDPKPRLRWTTELHERFVDAVTHLGGPEKATPKTIMRVMGVKGLTLYHLKSHLQ 73

Query:    85 KFRLGKQPHKEFN-DHSI--KDG-----LDLQRNTASSSG--VIGRSMNEMQMEVQRRLH 134
             KFRLGKQPHKE + +HSI  +D      LDL+RN   ++   +IGR+MNEMQMEVQRR+ 
Sbjct:    74 KFRLGKQPHKEHSQNHSICIRDTNRASMLDLRRNAVFTTSPLIIGRNMNEMQMEVQRRIE 133

Query:   135 EQLEVQRHLQLRIEAQGKYMQSILEKACQT 164
             E++ ++R +  RI AQGKYM+S+LEKAC+T
Sbjct:   134 EEVVIERQVNQRIAAQGKYMESMLEKACET 163

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2093726 AT3G24120 [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 90/170 (52%), Positives = 110/170 (64%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GD+ LVLTTDPKPRLRWT ELHERFVDAVTQLGGPDKATPKTIMR MGVKGLTLYHLKSH
Sbjct:    30 GDACLVLTTDPKPRLRWTTELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSH 89

Query:    83 LQKFRLGKQPHKEFNDHS-----IKDGLDLQRNTASSSGVIGRSMNE---------MQME 128
             LQKFRLG+Q  KE  ++S     + +  D   ++ SS  +  +  NE          QME
Sbjct:    90 LQKFRLGRQAGKESTENSKDASCVGESQDTGSSSTSSMRMAQQEQNEGYQVTEALRAQME 149

Query:   129 VQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKG 178
             VQRRLH+QLE  + +Q R++ + +     L+   +          A+F G
Sbjct:   150 VQRRLHDQLEYGQ-VQRRLQLRIEAQGKYLQSILEKACKAFDEQAATFAG 198

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2045761 AT2G01060 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 85/147 (57%), Positives = 104/147 (70%)

Query:    34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ-P 92
             K RLRWT ELHERFVDAV QLGGPD+ATPK ++RVMGV+GLT+YH+KSHLQK+RL K  P
Sbjct:    15 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLP 74

Query:    93 HK--EFNDHSIKDGLDLQRNTASSSGVIGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQ 150
                 E      K+  D+      SSG+      ++QMEVQ+RLHEQLEVQR LQLRIEAQ
Sbjct:    75 DSSSEGKKTDKKESGDMLSGLDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQ 134

Query:   151 GKYMQSILEKACQTLAS--GETVTPAS 175
             GKY++ I+E+  Q L+   GE   P +
Sbjct:   135 GKYLKKIIEEQ-QRLSGVLGEPSAPVT 160

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

TAIR|locus:2139865 PHR1 "phosphate starvation response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 79/179 (44%), Positives = 106/179 (59%)

Query:    34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92
             K R+RWT ELHE FV+AV  LGG ++ATPK ++++M V+GLT+YH+KSHLQK+R  + +P
Sbjct:   225 KARMRWTPELHEAFVEAVNSLGGSERATPKGVLKIMKVEGLTIYHVKSHLQKYRTARYRP 284

Query:    93 HKEFNDHSIKDGLDLQRNTASS-SGVIG-RSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQ 150
                      +    L+  T+    G IG      +QMEVQ++LHEQLE+QR+LQLRIE Q
Sbjct:   285 EPSETGSPERKLTPLEHITSLDLKGGIGITEALRLQMEVQKQLHEQLEIQRNLQLRIEEQ 344

Query:   151 GKYMQSILEKACQTLASGETVTPASF-------KGTIGNQAVPDVGTMKDFCPPLNFSQ 202
             GKY+Q + EK    L  G   T  S        K T  ++ VP+  T K  C  L   Q
Sbjct:   345 GKYLQMMFEKQNSGLTKGTASTSDSAAKSEQEDKKTADSKEVPEEETRK--CEELESPQ 401

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0055063 "sulfate ion homeostasis" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0071486 "cellular response to high light intensity" evidence=IMP

TAIR|locus:2095933 MYR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 73/153 (47%), Positives = 100/153 (65%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GDSGL+L+TD KPRL+WT +LHERF++AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct:    34 GDSGLILSTDAKPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVMGIPGLTLYHLKSH 93

Query:    83 LQKFRLGKQPHKEFNDHSIKDGLD--LQRNTASSSGV------IGRSMNEMQMEVQRRLH 134
             LQK+RL K  + + N+   K G+   ++  T  +  +      IG   N+    +   L 
Sbjct:    94 LQKYRLSKNLNGQANNSFNKIGIMTMMEEKTPDADEIQSENLSIGPQPNK-NSPIGEALQ 152

Query:   135 EQLEVQRHLQLRIEAQGKYMQSILEKACQTLAS 167
              Q+EVQR L  ++E Q +++Q  +E   + L S
Sbjct:   153 MQIEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQS 184

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172394 MYR1 "myb-related protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 73/152 (48%), Positives = 96/152 (63%)

Query:    23 GDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSH 82
             GDSGL+L+TD KPRL+WT +LHERFV+AV QLGG DKATPKTIM+VMG+ GLTLYHLKSH
Sbjct:    34 GDSGLILSTDAKPRLKWTPDLHERFVEAVNQLGGGDKATPKTIMKVMGIPGLTLYHLKSH 93

Query:    83 LQKFRLGK----QPHKEFNDHSIKDGLDLQRNTASSSGVIGRSMN---EMQMEVQRRLHE 135
             LQK+RL K    Q +   N  S+   ++        S     S+     M + +   L  
Sbjct:    94 LQKYRLSKNLNGQANSSLNKTSVMTMVEENPPEVDESHSESLSIGPQPSMNLPISDALQM 153

Query:   136 QLEVQRHLQLRIEAQGKYMQSILEKACQTLAS 167
             Q+EVQR L  ++E Q +++Q  +E   + L S
Sbjct:   154 QIEVQRRLHEQLEVQ-RHLQLRIEAQGKYLQS 184

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2089260 AT3G13040 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 71/138 (51%), Positives = 94/138 (68%)

Query:    34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK-QP 92
             K R+RWT ELHE FV AV +L GP+KATPK + ++M V+GLT+YH+KSHLQK+RL K  P
Sbjct:   241 KSRMRWTPELHESFVKAVIKLEGPEKATPKAVKKLMNVEGLTIYHVKSHLQKYRLAKYMP 300

Query:    93 HKEFN---DHSIKDGLDLQRNTASSSGVIGRSMNE---MQMEVQRRLHEQLEVQRHLQLR 146
              K+     D+S +  L L ++ A         + E   MQMEVQ++LHEQLEVQR LQLR
Sbjct:   301 EKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQLHEQLEVQRVLQLR 360

Query:   147 IEAQGKYMQSILEKACQT 164
             IE   KY++ +LE+  +T
Sbjct:   361 IEEHAKYLEKMLEEQRKT 378

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2148720 PHL1 "AT5G29000" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 77/185 (41%), Positives = 115/185 (62%)

Query:    11 MNSHHDRPLCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMG 70
             M S  D+ L  +  S  V T+  K R+RWT ELHE FV+AV QLGG ++ATPK +++++ 
Sbjct:   211 MVSSEDQ-LSGRNSSSSVATS--KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLN 267

Query:    71 VKGLTLYHLKSHLQKFRLGK-QPHK-----EFNDHSIKDGLDLQRNTASSSGVIGRSMNE 124
               GLT+YH+KSHLQK+R  + +P       E  +  +    D++     +S  I +++  
Sbjct:   268 NPGLTIYHVKSHLQKYRTARYKPETSEVTGEPQEKKMTSIEDIKSLDMKTSVEITQALR- 326

Query:   125 MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGTIGNQA 184
             +QMEVQ+RLHEQLE+QR LQL+IE QG+Y+Q + EK  +   +  + + AS K   G+ A
Sbjct:   327 LQMEVQKRLHEQLEIQRSLQLQIEKQGRYLQMMFEKQQKIQDNKSSSSEASPKQCNGSFA 386

Query:   185 VPDVG 189
               +VG
Sbjct:   387 EVEVG 391

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SAK5	APL_ARATH	No assigned EC number	0.6047	0.9337	0.9441	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	362
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-22
pfam14379	51	pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor,	3e-22
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	4e-09
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-07

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 89.4 bits (222), Expect = 1e-22
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
          KPR+ WT +LH+RF+ AV +LGGPD ATPK I+ +M V GLT   + SHLQK+RL +
Sbjct: 1  KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLKQ 57

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|206547 pfam14379, Myb_CC_LHEQLE, MYB-CC type transfactor, LHEQLE motif

 Score = 88.1 bits (219), Expect = 3e-22
 Identities = 35/42 (83%), Positives = 40/42 (95%)

Query: 125 MQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA 166
           +QMEVQRRLHEQLEVQRHLQ+RIEAQGKY+Q ILEKA +TL+
Sbjct: 10  LQMEVQRRLHEQLEVQRHLQIRIEAQGKYLQEILEKAQKTLS 51

This family is found towards the C-terminus of Myb-CC type transcription factors, and carries a highly conserved LHEQLE sequence motif. Length = 51

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 57.9 bits (139), Expect = 4e-09
 Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)

Query: 34  KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
           K ++ WT ELH RFV AV QLG  +KA P  I+ +MGV+ LT +++ SHLQK+R
Sbjct: 235 KAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYR 287

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 5/52 (9%)

Query: 36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR 87
          R  WT E  E  ++AV + G  +      I + +   G T    K+    + 
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGN---WSKIAKHLP--GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	362
PLN03162	526	golden-2 like transcription factor; Provisional	99.88
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	99.85
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.84
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	97.2
smart00426	68	TEA TEA domain.	90.39
PF14379	51	Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE mot	84.2

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.88  E-value=1.7e-23  Score=206.74  Aligned_cols=61  Identities=48%  Similarity=0.759  Sum_probs=57.9

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcCCC
Q 018015           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ   91 (362)
Q Consensus        30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~   91 (362)
                      ...+|+||+||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+.++
T Consensus       231 ~g~KKpRLrWTpELH~rFVeAV~qLG-~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk  291 (526)
T PLN03162        231 PGKKKAKVDWTPELHRRFVHAVEQLG-VEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRR  291 (526)
T ss_pred             CCCCCCcccCCHHHHHHHHHHHHHhC-cCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcc
Confidence            34679999999999999999999999 79999999999999999999999999999999875

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=99.85  E-value=1.2e-21  Score=146.59  Aligned_cols=49  Identities=76%  Similarity=0.930  Sum_probs=45.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHhc
Q 018015          118 IGRSMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLA  166 (362)
Q Consensus       118 ~~~~~~~mQmEVQrrLHEQLEVQR~LQLRIEAQGKYLQsiLEkAqe~La  166 (362)
                      ...+++++||||||||||||||||+||+|||||||||++|||+|+++++
T Consensus         3 ~i~EALr~QmEvQrrLhEQLEvQr~Lqlrieaqgkyl~~ilek~~~~~s   51 (51)
T PF14379_consen    3 QITEALRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKAQKALS   51 (51)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3456788999999999999999999999999999999999999998864

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.84  E-value=2.3e-21  Score=146.42  Aligned_cols=56  Identities=59%  Similarity=0.976  Sum_probs=54.2

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcC
Q 018015           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (362)
Q Consensus        34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~   89 (362)
                      |+|++||+|+|++||+||+.||+.+.||||.|+++|++++||..||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            78999999999999999999998789999999999999999999999999999975

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=97.20  E-value=0.001  Score=47.46  Aligned_cols=48  Identities=33%  Similarity=0.434  Sum_probs=41.0

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhh
Q 018015           36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFR   87 (362)
Q Consensus        36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYR   87 (362)
                      |-.||+|=++.|++||.++|. +  .-+.|-+.|+ .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~-~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGK-D--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTT-T--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-c--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            568999999999999999992 1  4789999998 7899999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00426 TEA TEA domain

Probab=90.39  E-value=0.3  Score=39.33  Aligned_cols=46  Identities=22%  Similarity=0.377  Sum_probs=29.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChh-HHHH---hhC-----------CCCc--cHHHHHHhhhh
Q 018015           38 RWTVELHERFVDAVTQLGGPDKATPK-TIMR---VMG-----------VKGL--TLYHLKSHLQK   85 (362)
Q Consensus        38 rWT~ELH~rFV~AV~qLGG~dkAtPK-~IL~---lM~-----------V~GL--T~~hVKSHLQK   85 (362)
                      .|.++|...|++|+...=  ...+=| .+..   +.|           ..|.  |..+|.||+|.
T Consensus         5 vWp~~lE~Af~~aL~~~~--~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        5 VWSPDIEQAFQEALAIYP--PCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             cCcHHHHHHHHHHHHHcC--ccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            699999999999998775  222222 1211   011           1343  78889999984

>PF14379 Myb_CC_LHEQLE: MYB-CC type transfactor, LHEQLE motif

Probab=84.20  E-value=2.1  Score=32.84  Aligned_cols=32  Identities=34%  Similarity=0.438  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHH
Q 018015          131 RRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQ  163 (362)
Q Consensus       131 rrLHEQLEVQR~LQLRIEAQGKYLQsiLEkAqe  163 (362)
                      .-|..|+||||+|.=.+|.|.+ ||.=+|...+
T Consensus         6 EALr~QmEvQrrLhEQLEvQr~-Lqlrieaqgk   37 (51)
T PF14379_consen    6 EALRMQMEVQRRLHEQLEVQRH-LQLRIEAQGK   37 (51)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhH
Confidence            4467888888888888888854 4444454433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	362
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		7e-09

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	362
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	1e-24
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score = 94.6 bits (235), Expect = 1e-24
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)

Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG 89
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+ 
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVA 59

Query: 90 KQ 91
           +
Sbjct: 60 LK 61

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 43/300 (14%), Positives = 83/300 (27%), Gaps = 93/300 (31%)

Query: 78  HLKSHLQKFRLGKQPHK----------EF-NDHSIKDGLDLQRNTASSSGVIGRSMNEMQ 126
           H   H   F  G+  ++           F ++   KD  D+ ++  S    I   +    
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKD 59

Query: 127 MEVQ-RRLHEQLE------VQRHLQLRIEAQGKYMQSILEKACQTLASGETVTPASFKGT 179
                 RL   L       VQ+ ++  +    K++ S ++   +   S  T      +  
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRDR 118

Query: 180 IGNQAVPDVGTMKDFCPPLNFSQFQDLNLYGGDQIDHLQQNMDRQSSLDHGFMQSNDNIC 239
           + N                    F   N+        L+Q                    
Sbjct: 119 LYNDNQV----------------FAKYNVSRLQPYLKLRQ-------------------A 143

Query: 240 LGKKRPSPY---NGGSGTGKSPL------------------MW-------SDDLRLQDLA 271
           L + RP+     +G  G+GK+ +                   W       S +  L+ L 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 272 TPPCIGPQDDPFKGDQIQIAP-PSNDL-DSISDIYETKP------VLSGDAVSSEKKFEA 323
                   +   + D         + +   +  + ++KP      VL    V + K + A
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL--LNVQNAKAWNA 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	362
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.95
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	83.64
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	83.32
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	83.25
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	83.04
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	81.87

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.95  E-value=8.9e-29  Score=190.50  Aligned_cols=60  Identities=48%  Similarity=0.796  Sum_probs=57.4

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcCC
Q 018015           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (362)
Q Consensus        30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~   90 (362)
                      ++++|+|++||+|||++||+||++|| .++||||.||++|+|+|||++||||||||||+..
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l   60 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 7999999999999999999999999999999875

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=83.64  E-value=0.69  Score=37.21  Aligned_cols=56  Identities=18%  Similarity=0.198  Sum_probs=35.0

Q ss_pred             CCCCcccCHHHHHHHHHHHHHhCCCCCCChhH----------------HHHhhCCCCccHHHHHHhhhhhhcC
Q 018015           33 PKPRLRWTVELHERFVDAVTQLGGPDKATPKT----------------IMRVMGVKGLTLYHLKSHLQKFRLG   89 (362)
Q Consensus        33 ~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~----------------IL~lM~V~GLT~~hVKSHLQKYRl~   89 (362)
                      .+..=+|.++|-..|++|++..-=-...+-+-                |...-| +-=|+.+|.||||.-|..
T Consensus         3 ~~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~   74 (82)
T 2hzd_A            3 NDAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARR   74 (82)
T ss_dssp             GGGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHH
T ss_pred             CCcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHH
Confidence            34556899999999999998875111222210                111111 333788999999976654

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=83.32  E-value=3.3  Score=30.92  Aligned_cols=50  Identities=20%  Similarity=0.367  Sum_probs=39.9

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcC
Q 018015           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (362)
Q Consensus        34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~   89 (362)
                      ..+-.||+|=++.|+++|..+|-    .=+.|-+.|  +|=|-.+|+.|-++|-..
T Consensus         7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence            34668999999999999999992    345666654  688999999998888543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.25  E-value=2.1  Score=31.97  Aligned_cols=53  Identities=19%  Similarity=0.328  Sum_probs=40.1

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCCCCCChh---HHHHhhCCCCccHHHHHHhhhhhhcCC
Q 018015           35 PRLRWTVELHERFVDAVTQLGGPDKATPK---TIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (362)
Q Consensus        35 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK---~IL~lM~V~GLT~~hVKSHLQKYRl~~   90 (362)
                      .+=.||+|=++.|+++|..+| .+...|.   .|-+.|  +|=|-.+|+.|-++|-...
T Consensus         7 ~~~~WT~eEd~~L~~~v~~~g-~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~~~   62 (75)
T 2yum_A            7 GNQLWTVEEQKKLEQLLIKYP-PEEVESRRWQKIADEL--GNRTAKQVASQVQKYFIKL   62 (75)
T ss_dssp             CSSCCCHHHHHHHHHHHHHSC-CCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHGGG
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-CCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            455899999999999999999 2222233   455554  6789999999999996543

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=83.04  E-value=2.9  Score=32.44  Aligned_cols=46  Identities=13%  Similarity=0.153  Sum_probs=38.4

Q ss_pred             CCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015           35 PRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF   86 (362)
Q Consensus        35 pRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY   86 (362)
                      .+-.||+|=+++|++||+.+|+    .=+.|-+.|+  +=|..+++.|-++|
T Consensus        17 ~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~   62 (79)
T 2yus_A           17 AGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRL   62 (79)
T ss_dssp             CSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTS
T ss_pred             cCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            4668999999999999999993    2357777765  68999999998877

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=81.87  E-value=2.3  Score=43.30  Aligned_cols=52  Identities=27%  Similarity=0.390  Sum_probs=43.5

Q ss_pred             CCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcCCC
Q 018015           34 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQ   91 (362)
Q Consensus        34 KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~~   91 (362)
                      +..-+||.|=|..|++||.+.|-    .=+.|-+.++-.  |..+|++|-++||....
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgTK--T~~Qvk~fy~~~kkr~~  429 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGNK--SVVQVKNFFVNYRRRFN  429 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSSC--CHHHHHHHHHHTTTTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCCC--CHHHHHHHHHHHHHHhC
Confidence            45789999999999999999992    456788887654  89999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	362
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	2e-23

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.0 bits (223), Expect = 2e-23
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 1/59 (1%)

Query: 30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 88
          T   KPR+ WT ELH +F+ AV  LG  ++A PK I+ +M V  LT  ++ SHLQKFR+
Sbjct: 1  TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRV 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	362
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.92
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	89.45
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	83.47

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=3.5e-26  Score=173.97  Aligned_cols=60  Identities=48%  Similarity=0.788  Sum_probs=56.9

Q ss_pred             cCCCCCCcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcCC
Q 018015           30 TTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK   90 (362)
Q Consensus        30 s~~~KpRLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~~   90 (362)
                      +..+|+|++||+|||++||+||++||+ ++||||.|+++|+|++||+.||+|||||||+..
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~-~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l   60 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQKFRVAL   60 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCc-cccchHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999999999985 899999999999999999999999999999875

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.36  Score=33.62  Aligned_cols=48  Identities=23%  Similarity=0.465  Sum_probs=39.0

Q ss_pred             CcccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhhhcC
Q 018015           36 RLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLG   89 (362)
Q Consensus        36 RLrWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKYRl~   89 (362)
                      ..+||+|=++.|++||..+|.    .=..|-+.|+  +=|..+|++|-++|-..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~~--~Rt~~q~k~ry~~~~~~   49 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR----RWTKISKLIG--SRTVLQVKSYARQYFKN   49 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS----CHHHHHHHHS--SSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc----hHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence            468999999999999999993    3446766664  77999999999987543

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=1.2  Score=29.64  Aligned_cols=44  Identities=20%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCCCChhHHHHhhCCCCccHHHHHHhhhhh
Q 018015           38 RWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKF   86 (362)
Q Consensus        38 rWT~ELH~rFV~AV~qLGG~dkAtPK~IL~lM~V~GLT~~hVKSHLQKY   86 (362)
                      .||.|=+.+|++||...| ..  .=+.|-+.|+  +=|..+++.|-++|
T Consensus         3 ~Wt~eEd~~L~~~v~~~G-~~--nW~~Ia~~~~--~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCG-FG--NWQDVANQMC--TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTC-TT--CHHHHHHHHT--TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHC-Cc--cHHHHHHHcC--CCCHHHHHHHHHHh
Confidence            399999999999999998 21  2446667765  55899999998876