Citrus Sinensis ID: 018020
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SZ83 | 362 | Uncharacterized oxidoredu | yes | no | 0.988 | 0.988 | 0.686 | 1e-152 | |
| P49305 | 334 | Uncharacterized oxidoredu | no | no | 0.883 | 0.958 | 0.298 | 1e-23 | |
| Q6DF30 | 330 | Trans-1,2-dihydrobenzene- | yes | no | 0.679 | 0.745 | 0.297 | 2e-20 | |
| Q642M9 | 334 | Trans-1,2-dihydrobenzene- | yes | no | 0.820 | 0.889 | 0.274 | 1e-19 | |
| Q6DKE0 | 330 | Trans-1,2-dihydrobenzene- | N/A | no | 0.665 | 0.730 | 0.283 | 5e-19 | |
| Q148L6 | 335 | Trans-1,2-dihydrobenzene- | yes | no | 0.676 | 0.731 | 0.276 | 3e-17 | |
| Q9TV69 | 335 | Trans-1,2-dihydrobenzene- | yes | no | 0.676 | 0.731 | 0.261 | 2e-16 | |
| Q9DBB8 | 333 | Trans-1,2-dihydrobenzene- | yes | no | 0.696 | 0.756 | 0.267 | 3e-16 | |
| Q9TV68 | 335 | Trans-1,2-dihydrobenzene- | yes | no | 0.676 | 0.731 | 0.272 | 4e-15 | |
| Q7JK39 | 334 | Trans-1,2-dihydrobenzene- | N/A | no | 0.671 | 0.727 | 0.267 | 5e-15 |
| >sp|Q9SZ83|Y4967_ARATH Uncharacterized oxidoreductase At4g09670 OS=Arabidopsis thaliana GN=At4g09670 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 536 bits (1382), Expect = e-152, Method: Compositional matrix adjust.
Identities = 248/361 (68%), Positives = 305/361 (84%), Gaps = 3/361 (0%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK 60
MATE+Q IR G++G ADIARK+SRAI LAPNA +S VASRSLEKA FA ANN+P K
Sbjct: 1 MATETQ--IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTK 58
Query: 61 VYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNAC 120
++GSYE+LL+D +IDA+Y+PLPTS+HV+WAI A+K KH+L+EKP+A+NV EFD I++AC
Sbjct: 59 IHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDAC 118
Query: 121 EENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPD 180
E NGVQ+MDGTMWVHNPRTA +KEF+SD +RFGQL+T+ SCFSFAGD +FLKNDIRVKP
Sbjct: 119 EANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPG 178
Query: 181 LDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240
LDGLGALGDAGWY IR+ L AN++ELPKTV A G VLNEAGVILSCGASL W+DGR AT
Sbjct: 179 LDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTAT 238
Query: 241 FSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH 300
CSFLAN+TM+ITA GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV PSEH
Sbjct: 239 IYCSFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEH 298
Query: 301 VVTTDIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIE 359
V T++PQEACMVREF+RLV IK NG+KP+ WP ISRKTQL++DAVK S+++ ++ I
Sbjct: 299 TVKTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQIS 358
Query: 360 I 360
+
Sbjct: 359 L 359
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: -EC: .EC: -EC: .EC: - |
| >sp|P49305|YMO1_RHIML Uncharacterized oxidoreductase ORF334 OS=Rhizobium meliloti PE=3 SV=1 | Back alignment and function description |
|---|
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 167/352 (47%), Gaps = 32/352 (9%)
Query: 9 IRFGIIGAADIA-RKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
+RFGIIG A IA K+ ++ A + A+ASR L++A A A F + YGSY+
Sbjct: 4 VRFGIIGTAAIAVEKVIPSMLSAEGLEVVAIASRDLDRAR--AAATRFGI-GRSYGSYDE 60
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
+L D +I+AVY+PLP +HV WAI A+ KH+L EKP+AL+V E +++ + G ++
Sbjct: 61 ILADPEIEAVYIPLPNHLHVHWAIRAAEAGKHVLCEKPLALDVEELSRLIDCRDRTGRRI 120
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG-DAEFLKNDIRVKPDLDGLGA 186
+ M +P+ ++ + V+ + G++R + F+ D + + ND + G GA
Sbjct: 121 QEAVMIRAHPQWDEIFDIVASGE-IGEVRAIQGVFTEVNLDPKSIVNDASI-----GGGA 174
Query: 187 LGDAGWYGIRSILWANDYELPKTVIAMH--GPVLNEAGVILSCGASLHWDDGRVATFSCS 244
L D G Y I + E P+ V A+ PV G+ A L + GR AT S
Sbjct: 175 LYDLGVYPIAAARMVFAAE-PERVFAVSDLDPVF---GIDRLTSAVLLFPGGRQATLVVS 230
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
+ ++ GT S+ L + P ++ + N + V
Sbjct: 231 TQLALRHNVEIFGTRKSISLKNPFNPTPDDHCRIVLD-----NGSKLAAAAAETRRVAPA 285
Query: 305 DIPQEACMVREFSRLVANIKNGS--KPEQKWPIISRKTQLIIDAVKTSIERG 354
D Q FS A I++GS E +W S T +++A++ S ERG
Sbjct: 286 D--QYRLQAERFS---AAIRSGSPLPIELEW---SLGTMKVLNAIQRSAERG 329
|
Rhizobium meliloti (taxid: 382) EC: 1 EC: . EC: - EC: . EC: - EC: . EC: - |
| >sp|Q6DF30|DHDH_XENTR Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Xenopus tropicalis GN=dhdh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/259 (29%), Positives = 125/259 (48%), Gaps = 13/259 (5%)
Query: 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A ++GI A I+ A++ P + + A+A+R LEKA NFA+ +N P K YGSY
Sbjct: 2 ATKWGICSAGKISNDFVVALSTLPAVDHQVVAIAARDLEKAKNFAQNHNIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D DID +Y+ +H + Q K++L EKP+A+N A+ ++ + V
Sbjct: 59 EELAKDPDIDVIYVGAIHPVHRDVVLMCLQNGKNILCEKPLAMNAAQVQELIATARKFNV 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLG 185
LM+ P +++ +S + G ++ + + F E K V+ +L G G
Sbjct: 119 FLMEAFWSRFFPVYEEIRALLSQ-KAIGDVKFIRAEFG----VEIYKVPRAVEKELGG-G 172
Query: 186 ALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
AL D G Y ++ + + E P++V A L+E GV S L + R A S +
Sbjct: 173 ALLDIGCYCVQFVTMVFNGERPESVTAKG--FLHETGVDESMSLILQYSGKRQAVLSSTI 230
Query: 246 LANMTMDITATGTNGSLQL 264
+A + GT G +Q+
Sbjct: 231 MATLPNQAAICGTKGIIQI 249
|
Xenopus tropicalis (taxid: 8364) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q642M9|DHDH_DANRE Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Danio rerio GN=dhdh PE=2 SV=2 | Back alignment and function description |
|---|
Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 155/328 (47%), Gaps = 31/328 (9%)
Query: 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI A I+ + A+ P + AVA+R L A FA+ ++ P + YGSY
Sbjct: 2 ALRWGICSAGKISHDFTVALRTLPAEQHQVVAVAARELAHAQEFAQKHSIP---RAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L +D +ID VY+ H++ + KK++L EKP+A+N+ E +++A + V
Sbjct: 59 EELAEDPEIDVVYVGTIHPHHLRVGLLFMNAKKNVLCEKPLAMNLKEVQQMISAARRSDV 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLG 185
LM+ P + ++ +S GQ++ + + F A L V+ L G G
Sbjct: 119 FLMEAVWTRFFPASLEISRLLSQ-NAVGQVKLVRADFG----AALLGVPRAVQKHLGG-G 172
Query: 186 ALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
AL D G Y I+ +L + E P+ + A V + GV + +L + R+A +C+
Sbjct: 173 ALLDIGIYCIQFVLMVFNGEKPEQIQA--SGVCLDTGVDEAMVVTLKFSGHRLAVCTCTV 230
Query: 246 LANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH----- 300
A + + GT G+++ +P A + T N + T + P+P H
Sbjct: 231 AAELPNEALIVGTEGTIK-----VP-----AHMWCPTSLLVNGVETQF-PVPDPHLPLNF 279
Query: 301 VVTTDIPQEACMVREFSRLVANIKNGSK 328
+ +T + EA VR ++A +K S+
Sbjct: 280 INSTGMRYEAEEVRRC--VLAGLKESSR 305
|
Danio rerio (taxid: 7955) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q6DKE0|DHDH_XENLA Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Xenopus laevis GN=dhdh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 95.5 bits (236), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 125/272 (45%), Gaps = 31/272 (11%)
Query: 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A ++GI I+ A++ P + + AVA+R LEKA NFA+ +N P K YGSY
Sbjct: 2 ATKWGICSTGRISNDFVVALSTLPAVDHQVVAVAARDLEKAKNFAQIHNIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D DID +Y+ +H + Q K++L EKP+A+N A+ ++ A + V
Sbjct: 59 EELAKDPDIDVIYVGAIHPVHRDVVLMCLQNGKNVLCEKPLAMNSAQVRELIAAARKFNV 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDI---------R 176
LM+ P +++ +S GD +F++ +
Sbjct: 119 FLMEAFWSRFFPVYEEIRTLLSQKA--------------IGDVKFIRAEFGTPIYTVPRA 164
Query: 177 VKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDG 236
V+ +L G GAL D G Y ++ + + E P++V A L+E GV + L +
Sbjct: 165 VEKELGG-GALLDIGCYCVQFVTMVFNGEKPESVTARG--FLHETGVDETISIILEYSGK 221
Query: 237 RVATFSCSFLANMTMDITATGTNGSLQLHDFI 268
R A S + +A + GT G +Q+ F+
Sbjct: 222 RQAILSSTIMAALPNQTAICGTKGIIQIPSFM 253
|
Xenopus laevis (taxid: 8355) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q148L6|DHDH_BOVIN Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Bos taurus GN=DHDH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 19/264 (7%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI+ A I+ + + + P + + AVA+R L +A FAK ++ P K YGSY
Sbjct: 2 ALRWGIVSAGLISSDFTTMLRMLPRSEHQVVAVAARDLSRAKEFAKKHDIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D D++ Y+ H + K +L EKPM +N AE ++ G+
Sbjct: 59 EELAKDPDVEVAYIGTQHPQHKAAVLLCLTAGKAVLCEKPMGVNAAEVREMVAEARSRGL 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLD--- 182
M+ P ++ ++ G LR + AEF KN V D
Sbjct: 119 FFMEAIWTRFFPAVEALRSVLAQ-GTLGDLRVVR--------AEFGKNLTHVHRATDWAQ 169
Query: 183 GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242
G L D G Y ++ I + P+ + A+ +E GV + L + G +F+
Sbjct: 170 AGGGLLDLGIYCLQFISMVFGGQKPEKISAVG--RRHETGVDDTVTVILQYPGGVHGSFT 227
Query: 243 CSFLANMTMDITATGTNGSLQLHD 266
CS A ++ ++ +GT G QL D
Sbjct: 228 CSISAQLSNTVSVSGTKGMAQLLD 251
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q9TV69|DHDH_PIG Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Sus scrofa GN=DHDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 119/264 (45%), Gaps = 19/264 (7%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI+ A I+ + + L P + + AVA+R L +A FA+ ++ P K YGSY
Sbjct: 2 ALRWGIVSAGLISSDFTTVLRLLPRSEHQVVAVAARDLSRAKEFARKHDIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D +++ Y+ H + K +L EKPM +N AE ++ G+
Sbjct: 59 EELAKDPNVEVAYIGTQHPQHKATVLLCLAAGKAVLCEKPMGVNAAEVREMVAEARSRGL 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLD--- 182
LM+ P ++ ++ + G LR + A F K+ V +D
Sbjct: 119 FLMEAIWTRFFPAVEALRSVLAQ-ETLGDLRVVQ--------ANFGKSIANVPRSVDWAQ 169
Query: 183 GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242
G+L D G Y ++ I + P+ + A+ E GV + L + G +F+
Sbjct: 170 AGGSLLDLGIYCLQFISMVYGGQKPEKISAVGRRY--ETGVDDTVSVLLQYPGGVQGSFT 227
Query: 243 CSFLANMTMDITATGTNGSLQLHD 266
CS + ++ ++ +GT G Q+ D
Sbjct: 228 CSITSQLSNTVSVSGTKGMAQILD 251
|
Sus scrofa (taxid: 9823) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q9DBB8|DHDH_MOUSE Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Mus musculus GN=Dhdh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 115/265 (43%), Gaps = 13/265 (4%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI+ A IA + ++ P++ + AVA+R L +A FA+ N P K YGSY
Sbjct: 2 ALRWGIVSAGLIANDFTTVLSSLPSSEHQVVAVAARDLNRAEEFAQKFNIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D +++ Y+ H + K +L EKPM +N AE ++ GV
Sbjct: 59 EELAKDPNVEVAYIATQHPQHKPAVLLCLAAGKAVLCEKPMGVNAAEVREMVAKARSQGV 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLG 185
LM+ P ++E + G LR + F F L + R G
Sbjct: 119 FLMEAIWSRFFPAMEALREVLVQ-GTIGDLRVARAEFGFD-----LSHIPRATDWNQAGG 172
Query: 186 ALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
L D G Y ++ + + P+ + A+ ++E GV + L + G +F+CS
Sbjct: 173 GLLDLGIYCVQFLSMIFGAQKPEKISAVGR--IHETGVDDTVSVLLQYPGGVHGSFTCSI 230
Query: 246 LANMTMDITATGTNGSLQLHDFIIP 270
+N+ +GT G Q+ P
Sbjct: 231 SSNLPNTAYVSGTKGMAQIQKLWAP 255
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q9TV68|DHDH_CANFA Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Canis familiaris GN=DHDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 115/264 (43%), Gaps = 19/264 (7%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI+ A I+ + + P + + AVA+R L +A FA+ ++ P K YGSY
Sbjct: 2 ALRWGIVSAGLISSDFTTVLGTLPRSEHQVVAVAARDLSRAKEFARKHDIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D +++ Y+ H + K +L EKPM +N AE ++ G+
Sbjct: 59 EELAKDPNVEVAYIGTQHPQHKAAVLLCLAAGKAVLCEKPMGVNAAEVREMVAEARSRGL 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLD--- 182
LM+ P ++ +S G+LR AEF KN + +D
Sbjct: 119 FLMEAIWTRFFPAIEALRAALSQ-GTLGELRVAR--------AEFGKNFTHIPRSVDWAQ 169
Query: 183 GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242
G L D G Y I+ I + P+ + A+ E GV + L + G +F+
Sbjct: 170 AGGGLLDLGIYCIQFISMVFGGQKPEKISAVG--RRYETGVDDTVTVLLQYPGGIHGSFT 227
Query: 243 CSFLANMTMDITATGTNGSLQLHD 266
CS A ++ +GT G Q+ D
Sbjct: 228 CSISAQLSNMAFVSGTKGIGQILD 251
|
Canis familiaris (taxid: 9615) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
| >sp|Q7JK39|DHDH_MACFU Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase OS=Macaca fuscata fuscata GN=DHDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/262 (26%), Positives = 114/262 (43%), Gaps = 19/262 (7%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI+ I+ + + P + + AVA+R L +A FA+ ++ P K YGSY
Sbjct: 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D +++ Y+ H + K +L EKPM +N AE ++ G+
Sbjct: 59 EELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGL 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLD--- 182
LM+ P + ++ ++ G LR AEF KN V +D
Sbjct: 119 FLMEAIWTRFFPASEALRSVLAQ-GTLGDLRV--------ARAEFGKNLTHVPRAVDWAQ 169
Query: 183 GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242
GAL D G Y ++ I + P+ + M +E GV + L + +F+
Sbjct: 170 AGGALLDLGIYCVQFISMVFGGQKPEKISVMGR--RHETGVDDTVTVLLQYPGEVHGSFT 227
Query: 243 CSFLANMTMDITATGTNGSLQL 264
CS A ++ + +GT G QL
Sbjct: 228 CSITAQLSNTASVSGTKGMAQL 249
|
Macaca fuscata fuscata (taxid: 9543) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 7 EC: 9 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| 224082534 | 358 | predicted protein [Populus trichocarpa] | 0.983 | 0.994 | 0.756 | 1e-161 | |
| 224082536 | 358 | predicted protein [Populus trichocarpa] | 0.983 | 0.994 | 0.747 | 1e-160 | |
| 255572367 | 360 | oxidoreductase, putative [Ricinus commun | 0.983 | 0.988 | 0.719 | 1e-152 | |
| 147858660 | 358 | hypothetical protein VITISV_013812 [Viti | 0.983 | 0.994 | 0.691 | 1e-151 | |
| 449446357 | 359 | PREDICTED: uncharacterized oxidoreductas | 0.969 | 0.977 | 0.719 | 1e-150 | |
| 15233990 | 362 | uncharacterized oxidoreductase [Arabidop | 0.988 | 0.988 | 0.686 | 1e-150 | |
| 297813401 | 362 | oxidoreductase family protein [Arabidops | 0.988 | 0.988 | 0.681 | 1e-149 | |
| 225468829 | 358 | PREDICTED: uncharacterized oxidoreductas | 0.983 | 0.994 | 0.680 | 1e-147 | |
| 356499161 | 361 | PREDICTED: uncharacterized oxidoreductas | 0.975 | 0.977 | 0.703 | 1e-147 | |
| 225463145 | 347 | PREDICTED: uncharacterized oxidoreductas | 0.953 | 0.994 | 0.677 | 1e-145 |
| >gi|224082534|ref|XP_002306732.1| predicted protein [Populus trichocarpa] gi|222856181|gb|EEE93728.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 270/357 (75%), Positives = 313/357 (87%), Gaps = 1/357 (0%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
++ IRFGIIG ADIARKLSRAITLAPNA LSAVASRSL+KA+ FAKANNFPP AK+YGS
Sbjct: 2 AEKPIRFGIIGCADIARKLSRAITLAPNAELSAVASRSLDKASAFAKANNFPPSAKIYGS 61
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YE LLDD +IDAVY+PLPTS+HVKWA VAQKKKH+L+EKP+ LNV E D I+ ACE NG
Sbjct: 62 YEDLLDDPEIDAVYVPLPTSLHVKWACLVAQKKKHILLEKPVGLNVTELDKIVEACEANG 121
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
VQ+MDGTMW+HNPRT +MKEF++D +RFG+L+ MHSCF+FAGD +FLKNDIRVK DLD L
Sbjct: 122 VQIMDGTMWIHNPRTHKMKEFLNDKERFGELKNMHSCFTFAGDEDFLKNDIRVKSDLDAL 181
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
GALGDAGWYGIRSILWA DYELPKTV A+ GPVLNEAGVILSCGA+LHW+DG+VATF CS
Sbjct: 182 GALGDAGWYGIRSILWAVDYELPKTVTALPGPVLNEAGVILSCGAALHWEDGKVATFHCS 241
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
FLA++TMDITA GT G+L L+DFIIPF E+EAS+ T ++ F DLVTGWVPLPS+H VTT
Sbjct: 242 FLAHLTMDITAIGTAGTLHLNDFIIPFGEKEASFTTVSKSGFTDLVTGWVPLPSQHTVTT 301
Query: 305 DIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
D+PQEACMV EF+RLV NIK NG+KP+ KWP ISRKTQLI+DAV TSI +G +P+EI
Sbjct: 302 DLPQEACMVTEFARLVGNIKANGAKPDPKWPSISRKTQLILDAVTTSIAQGSKPVEI 358
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224082536|ref|XP_002306733.1| predicted protein [Populus trichocarpa] gi|222856182|gb|EEE93729.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-160, Method: Compositional matrix adjust.
Identities = 267/357 (74%), Positives = 311/357 (87%), Gaps = 1/357 (0%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
++ IRFGIIG ADIARKLSRAITLAPNA LSAVASRSL+KA+ FAKANNFPP AK+YGS
Sbjct: 2 AEKPIRFGIIGCADIARKLSRAITLAPNAELSAVASRSLDKASAFAKANNFPPSAKIYGS 61
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YE LLDD +IDAVY+PLPTS+HVKWA VAQKKKH+L+EKP+ LNV E D I+ ACE NG
Sbjct: 62 YEDLLDDPEIDAVYVPLPTSLHVKWACLVAQKKKHILLEKPVGLNVTELDKIVEACEANG 121
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
VQ+MDGTMW+HNPRT +MKEF++D +RFG+L+ MHSCF++AGD +FL NDIRV DLD L
Sbjct: 122 VQIMDGTMWIHNPRTHKMKEFLNDKERFGELKNMHSCFTYAGDEDFLSNDIRVSSDLDAL 181
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
GALGDAGWYGIRSILWA DYELPKTV A+ G VLNEAGVILSCGASLHW+DG+VATF CS
Sbjct: 182 GALGDAGWYGIRSILWAVDYELPKTVTALPGTVLNEAGVILSCGASLHWEDGKVATFHCS 241
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
FLA++TMDITA GT G+L L+DFIIPF E+EAS+ T ++ +F DLVTGWVPLPS+H VTT
Sbjct: 242 FLAHLTMDITAIGTAGTLHLNDFIIPFGEKEASFTTVSKSWFTDLVTGWVPLPSQHTVTT 301
Query: 305 DIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
D+PQEACMV EF+RLV NIK NG+KP+ KWP ISRKTQLI+DAV TSI +G +P+EI
Sbjct: 302 DLPQEACMVTEFARLVGNIKANGAKPDPKWPSISRKTQLILDAVTTSIAQGSKPVEI 358
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572367|ref|XP_002527122.1| oxidoreductase, putative [Ricinus communis] gi|223533545|gb|EEF35285.1| oxidoreductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 257/357 (71%), Positives = 312/357 (87%), Gaps = 1/357 (0%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
++ ++FGIIG A+IARK++RAITL PN LSA+ASRS+EKA FAKANNFP +AK+YGS
Sbjct: 2 AETLVQFGIIGCAEIARKVARAITLTPNVQLSAIASRSVEKAAAFAKANNFPSNAKIYGS 61
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YE+LLDD DIDAVY+PLPTS+HVKWA A+KKKH+L+EKP+ LNV EFD IL ACE NG
Sbjct: 62 YESLLDDPDIDAVYIPLPTSLHVKWACLAAEKKKHILLEKPVGLNVDEFDKILAACEANG 121
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
VQ+MDGTMW+HNPRT M++F+ D +RFGQLRT+HSCF+FAGD +FLKNDIRVKP+LDGL
Sbjct: 122 VQIMDGTMWMHNPRTQAMRDFLCDKERFGQLRTVHSCFTFAGDEDFLKNDIRVKPELDGL 181
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
GALGDAGWY IR+ILWA DYELP TVIA+HGP+ NEAGVIL+C ASLHWDDG++ATF CS
Sbjct: 182 GALGDAGWYCIRAILWAADYELPNTVIALHGPIFNEAGVILACSASLHWDDGKIATFHCS 241
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
FL ++TM ITA GTNG+L L+DFIIPF E+E SY +++C+FN+LVTGW P PS+H+V T
Sbjct: 242 FLTHLTMYITAIGTNGTLHLNDFIIPFEEKECSYTASSKCWFNELVTGWEPPPSQHIVFT 301
Query: 305 DIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
D+PQEACMVREF+RLV NIK NG++P++ WP SRKTQLI+DAVKTSIERGFEP++I
Sbjct: 302 DLPQEACMVREFARLVGNIKANGAEPDKTWPTRSRKTQLILDAVKTSIERGFEPVKI 358
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147858660|emb|CAN80430.1| hypothetical protein VITISV_013812 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust.
Identities = 247/357 (69%), Positives = 304/357 (85%), Gaps = 1/357 (0%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
+++ I+FGI+G ADIARK+SRAITLAPNA L AV SRSLEKAT FA AN FPP AK+YGS
Sbjct: 2 AESPIQFGILGCADIARKVSRAITLAPNATLYAVGSRSLEKATRFAAANGFPPSAKIYGS 61
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YEA+LDD D+DAVY+PLPTS+H+KWA+ A+KKKH+L+EKP+ALNVAE D IL ACE NG
Sbjct: 62 YEAVLDDPDVDAVYVPLPTSLHLKWAVLAAEKKKHVLLEKPVALNVAELDQILEACESNG 121
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
VQ MDGTMW+H+PRTA+MKEF+SDPQRFGQL+++ SCF+F ++F +N+IRVKPDLD L
Sbjct: 122 VQFMDGTMWMHHPRTAKMKEFLSDPQRFGQLKSVQSCFTFLAASDFHENNIRVKPDLDAL 181
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
G LGD GWY IR+IL+ DYELPK+V A+ GPVLN+ GV+ SCGASL W+DG+VATF+CS
Sbjct: 182 GVLGDTGWYCIRAILFVADYELPKSVRALPGPVLNKTGVLKSCGASLIWEDGKVATFTCS 241
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
F AN+TM +TA GT G+LQ+ DF+IPF+E+ A++ +FN+LVTGW +PSEHVVTT
Sbjct: 242 FEANLTMSLTAVGTKGTLQVQDFVIPFKEDRAAFSAGIESWFNELVTGWRTMPSEHVVTT 301
Query: 305 DIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
D+PQEA MVREFS LVA+IK NGSKPEQKWP +SRKTQL++DAVK SIERG EP+E+
Sbjct: 302 DLPQEALMVREFSGLVADIKRNGSKPEQKWPTLSRKTQLVLDAVKASIERGLEPVEV 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446357|ref|XP_004140938.1| PREDICTED: uncharacterized oxidoreductase At4g09670-like [Cucumis sativus] gi|449494087|ref|XP_004159443.1| PREDICTED: uncharacterized oxidoreductase At4g09670-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1387), Expect = e-150, Method: Compositional matrix adjust.
Identities = 254/353 (71%), Positives = 303/353 (85%), Gaps = 2/353 (0%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IRFGIIGAADIARK+SRAI LAPNA LSA+ SRSLEKA+ FA N F P K+YGSYEA+
Sbjct: 6 IRFGIIGAADIARKVSRAIALAPNATLSAIGSRSLEKASKFASDNGFSPHVKIYGSYEAV 65
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
LDD +IDAVY+PLPTS+H++WA+ A+KKKHLL+EKP+ALNVAEFD IL ACE NGVQ M
Sbjct: 66 LDDPEIDAVYVPLPTSLHLRWAVLAAEKKKHLLLEKPVALNVAEFDKILEACEANGVQFM 125
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALG 188
DGTMW+HNPRTA+MKEF+SD +FGQL+ ++S FSFA D++FL NDIRVKPDLDGLGALG
Sbjct: 126 DGTMWMHNPRTAKMKEFLSDADKFGQLKAVNSVFSFAADSDFLANDIRVKPDLDGLGALG 185
Query: 189 DAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLAN 248
DAGWY IRSIL+A +YELPK VIA+ PVLNE GVILSCG SL W+DG+VATF CSFL+N
Sbjct: 186 DAGWYCIRSILFAANYELPKRVIALPNPVLNELGVILSCGCSLLWEDGKVATFHCSFLSN 245
Query: 249 MTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQ 308
+TMD+TA GTNG+L L+DFIIP+ E+EA + T ++ FNDLVTGW PLPS+H+V TD+PQ
Sbjct: 246 LTMDVTAIGTNGTLHLNDFIIPYVEKEAYFSTCSKSGFNDLVTGWQPLPSKHIVPTDLPQ 305
Query: 309 EACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
EA MVREFS LV IK NGSKPE+KWP I+RKTQL++DAVK S++RG EP+E+
Sbjct: 306 EAHMVREFSHLVKEIKLNGSKPEKKWPTITRKTQLVLDAVKASLDRG-EPVEL 357
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233990|ref|NP_192705.1| uncharacterized oxidoreductase [Arabidopsis thaliana] gi|73921136|sp|Q9SZ83.1|Y4967_ARATH RecName: Full=Uncharacterized oxidoreductase At4g09670 gi|4538897|emb|CAB39634.1| AX110P-like protein [Arabidopsis thaliana] gi|7267662|emb|CAB78090.1| AX110P-like protein [Arabidopsis thaliana] gi|21554042|gb|AAM63123.1| AX110P-like protein [Arabidopsis thaliana] gi|26983872|gb|AAN86188.1| putative AX110P protein [Arabidopsis thaliana] gi|332657379|gb|AEE82779.1| uncharacterized oxidoreductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 536 bits (1382), Expect = e-150, Method: Compositional matrix adjust.
Identities = 248/361 (68%), Positives = 305/361 (84%), Gaps = 3/361 (0%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK 60
MATE+Q IR G++G ADIARK+SRAI LAPNA +S VASRSLEKA FA ANN+P K
Sbjct: 1 MATETQ--IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTK 58
Query: 61 VYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNAC 120
++GSYE+LL+D +IDA+Y+PLPTS+HV+WAI A+K KH+L+EKP+A+NV EFD I++AC
Sbjct: 59 IHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDAC 118
Query: 121 EENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPD 180
E NGVQ+MDGTMWVHNPRTA +KEF+SD +RFGQL+T+ SCFSFAGD +FLKNDIRVKP
Sbjct: 119 EANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPG 178
Query: 181 LDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240
LDGLGALGDAGWY IR+ L AN++ELPKTV A G VLNEAGVILSCGASL W+DGR AT
Sbjct: 179 LDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTAT 238
Query: 241 FSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH 300
CSFLAN+TM+ITA GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV PSEH
Sbjct: 239 IYCSFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEH 298
Query: 301 VVTTDIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIE 359
V T++PQEACMVREF+RLV IK NG+KP+ WP ISRKTQL++DAVK S+++ ++ I
Sbjct: 299 TVKTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQIS 358
Query: 360 I 360
+
Sbjct: 359 L 359
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297813401|ref|XP_002874584.1| oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] gi|297320421|gb|EFH50843.1| oxidoreductase family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 534 bits (1375), Expect = e-149, Method: Compositional matrix adjust.
Identities = 246/361 (68%), Positives = 306/361 (84%), Gaps = 3/361 (0%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK 60
MAT++Q IR G++G ADIARK+SRAI LAPNA ++AVASRSLEKA +FA ANN+P K
Sbjct: 1 MATDTQ--IRIGVMGCADIARKVSRAINLAPNATIAAVASRSLEKAKSFATANNYPESTK 58
Query: 61 VYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNAC 120
++GSYE++L+D +IDA+Y+PLPTS+HV+WAI A+K KH+L+EKP+A+NV EFD I+ AC
Sbjct: 59 IHGSYESILEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVVAC 118
Query: 121 EENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPD 180
E NGVQ+MDGTMWVHNPRTA +KEF+SD +RFGQL+T+ SCFSFAGD EFLKNDIRVKP
Sbjct: 119 EANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEEFLKNDIRVKPG 178
Query: 181 LDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240
LDGLGALGDAGWY IR+ L AN++ELPKTV A G VLN+AGVILSCGASL W+DGR AT
Sbjct: 179 LDGLGALGDAGWYTIRATLLANNFELPKTVTAFPGAVLNKAGVILSCGASLSWEDGRTAT 238
Query: 241 FSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH 300
CSFLAN+TM+ITA GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV PSEH
Sbjct: 239 IYCSFLANLTMEITAIGTKGTLRVHDFIIPYKESEASFTTSTKAWFNDLVTAWVSPPSEH 298
Query: 301 VVTTDIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIE 359
V T++PQEACMVREF+RLV IK NG+KP+ WP ISRKTQL++DAVK S+++ ++ I
Sbjct: 299 TVKTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQIS 358
Query: 360 I 360
+
Sbjct: 359 L 359
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225468829|ref|XP_002265072.1| PREDICTED: uncharacterized oxidoreductase At4g09670-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 243/357 (68%), Positives = 300/357 (84%), Gaps = 1/357 (0%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
++ I+FGI+G A+IARK+SRAITLAPNA L AV SRSLEKA FA AN FPP AK+YGS
Sbjct: 2 AETPIQFGILGCAEIARKVSRAITLAPNATLYAVGSRSLEKARRFAAANGFPPSAKIYGS 61
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YEA+LDD +DAVY+PLPTS+H+KWA+ A+KKKH+L+EKP+ALNVAE D IL ACE NG
Sbjct: 62 YEAVLDDPGVDAVYVPLPTSLHLKWAVLAAEKKKHVLLEKPVALNVAELDQILEACESNG 121
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
VQ MDGTMW+H+PRTA+MKE +SDPQRFGQL+++ SCF++ ++F +N+IRVKPDLD L
Sbjct: 122 VQFMDGTMWMHHPRTAKMKELLSDPQRFGQLKSVQSCFTYLATSDFHENNIRVKPDLDAL 181
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
GALGD GWY IR+IL+A DYELPK+V A+ G V NEAGV+ SCGASL W+DG+VATF+CS
Sbjct: 182 GALGDVGWYCIRAILFAVDYELPKSVKALPGTVFNEAGVLTSCGASLLWEDGKVATFNCS 241
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
F AN+TM+ITA GT G+LQ+ DF+IP +E+ A++ +FNDLVTGW +PSEHVVTT
Sbjct: 242 FQANLTMNITAIGTKGTLQVQDFVIPVKEDSAAFSAGIESWFNDLVTGWKTMPSEHVVTT 301
Query: 305 DIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
D+PQEA MV+EFS LVA+IK NGSK EQKWP +SRKTQL++DAVK SIERG EP+E+
Sbjct: 302 DLPQEALMVKEFSGLVADIKRNGSKLEQKWPTLSRKTQLVLDAVKVSIERGLEPVEL 358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499161|ref|XP_003518411.1| PREDICTED: uncharacterized oxidoreductase At4g09670-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 249/354 (70%), Positives = 305/354 (86%), Gaps = 1/354 (0%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IRFG+IG ADIARK+SRAI+LAPNA L AV SRSL+KA FA AN FP AKV+GSYEA+
Sbjct: 7 IRFGVIGCADIARKVSRAISLAPNAALYAVGSRSLDKARAFAAANGFPAAAKVHGSYEAV 66
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
LDD D+DAVY+PLPTS+HV+WA+ AQKKKH+L+EKP+AL+ AEFD I+ ACE NGVQLM
Sbjct: 67 LDDPDVDAVYVPLPTSLHVRWAVLAAQKKKHVLLEKPVALHAAEFDEIVEACESNGVQLM 126
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALG 188
DGTMW+H+PRTA+M++F+SD RFGQLR++H+ F+FA DA+FL+NDIRVKPDLD LG+LG
Sbjct: 127 DGTMWMHHPRTAKMRDFLSDSNRFGQLRSIHTHFTFAADADFLENDIRVKPDLDALGSLG 186
Query: 189 DAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLAN 248
D GWY +R+ILWA +YELPKTVIA P LN+AGVILSCGASLHW+DG+VATF CSFL N
Sbjct: 187 DEGWYCLRAILWAANYELPKTVIASRNPELNKAGVILSCGASLHWEDGKVATFHCSFLTN 246
Query: 249 MTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQ 308
+TMDITA GT G+L +HDFIIP+ E+EAS++ T F+DLV+ W+P PS+H++ TDIPQ
Sbjct: 247 LTMDITAVGTKGTLHVHDFIIPYEEKEASFYAATETGFDDLVSKWIPQPSKHIIKTDIPQ 306
Query: 309 EACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361
EA MV EF+RLVA+IK N SKPE+KWP ISRKTQL++DAVK SIERGFEP++I+
Sbjct: 307 EALMVTEFARLVADIKFNNSKPEKKWPTISRKTQLVLDAVKASIERGFEPVQIQ 360
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225463145|ref|XP_002266918.1| PREDICTED: uncharacterized oxidoreductase At4g09670 isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 242/357 (67%), Positives = 297/357 (83%), Gaps = 12/357 (3%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
+++ I+FGI+G ADIARK+SRAITLAPNA L AV SRSLEKAT FA AN FPP AK+YGS
Sbjct: 2 AESPIQFGILGCADIARKVSRAITLAPNATLYAVGSRSLEKATRFAAANGFPPSAKIYGS 61
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YEA+LDD D+DAVY+PLPTS+H+KWA+ A+KKKH+L+EKP+ALNVAE D IL ACE NG
Sbjct: 62 YEAVLDDPDVDAVYVPLPTSLHLKWAVLAAEKKKHVLLEKPVALNVAELDQILEACESNG 121
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
VQ MDGTMW+H+PRTA+MKEF+SDPQRFGQL+++ SCF+F ++F +N+IRVKPDLD L
Sbjct: 122 VQFMDGTMWMHHPRTAKMKEFLSDPQRFGQLKSVQSCFTFLAASDFHENNIRVKPDLDAL 181
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
G LGD GWY IR+IL+ DYELPK+V A+ GPVLN+ GV+ SCGASL W+DG+VATF+CS
Sbjct: 182 GVLGDTGWYCIRAILFVADYELPKSVRALPGPVLNKTGVLKSCGASLIWEDGKVATFTCS 241
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
F AN+TM +TA GT G+LQ+ DF+IPF+E+ A++ GW +PSEHVVTT
Sbjct: 242 FEANLTMSLTAVGTKGTLQVQDFVIPFKEDRAAF-----------SAGWRTMPSEHVVTT 290
Query: 305 DIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
D+PQEA MVREFS LVA+IK NGSKPEQKWP +SRKTQL++DAVK SIERG EP+E+
Sbjct: 291 DLPQEALMVREFSGLVADIKRNGSKPEQKWPTLSRKTQLVLDAVKASIERGLEPVEV 347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| TAIR|locus:2118440 | 362 | AT4G09670 [Arabidopsis thalian | 0.988 | 0.988 | 0.656 | 5.7e-130 | |
| TAIR|locus:2009086 | 352 | AT1G34200 [Arabidopsis thalian | 0.953 | 0.980 | 0.541 | 3e-101 | |
| TAIR|locus:2013805 | 364 | AT1G66130 [Arabidopsis thalian | 0.966 | 0.961 | 0.394 | 5.6e-68 | |
| TIGR_CMR|SPO_0865 | 330 | SPO_0865 "oxidoreductase, Gfo/ | 0.453 | 0.496 | 0.366 | 5.5e-22 | |
| FB|FBgn0031418 | 335 | CG3609 [Drosophila melanogaste | 0.690 | 0.746 | 0.287 | 5.8e-17 | |
| ASPGD|ASPL0000010504 | 416 | AN3524 [Emericella nidulans (t | 0.306 | 0.266 | 0.4 | 2.1e-16 | |
| ZFIN|ZDB-GENE-040426-2180 | 334 | dhdhl "dihydrodiol dehydrogena | 0.671 | 0.727 | 0.290 | 6.7e-16 | |
| UNIPROTKB|G4NB69 | 426 | MGG_11542 "Uncharacterized pro | 0.430 | 0.366 | 0.347 | 1.2e-15 | |
| ZFIN|ZDB-GENE-040927-25 | 347 | zgc:101723 "zgc:101723" [Danio | 0.676 | 0.706 | 0.273 | 2.1e-15 | |
| ASPGD|ASPL0000075159 | 408 | AN8642 [Emericella nidulans (t | 0.414 | 0.367 | 0.301 | 6.7e-14 |
| TAIR|locus:2118440 AT4G09670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1275 (453.9 bits), Expect = 5.7e-130, P = 5.7e-130
Identities = 237/361 (65%), Positives = 294/361 (81%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK 60
MATE+Q IR G++G ADIARK+SRAI LAPNA +S VASRSLEKA FA ANN+P K
Sbjct: 1 MATETQ--IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTK 58
Query: 61 VYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNAC 120
++GSYE+LL+D +IDA+Y+PLPTS+HV+WAI A+K KH+L+EKP+A+NV EFD I++AC
Sbjct: 59 IHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDAC 118
Query: 121 EENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPX 180
E NGVQ+MDGTMWVHNPRTA +KEF+SD +RFGQL+T+ SCFSFAGD +FLKNDIRVKP
Sbjct: 119 EANGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPG 178
Query: 181 XXXXXXXXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240
WY IR+ L AN++ELPKTV A G VLNEAGVILSCGASL W+DGR AT
Sbjct: 179 LDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTAT 238
Query: 241 FSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH 300
CSFLAN+TM+ITA GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV PSEH
Sbjct: 239 IYCSFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEH 298
Query: 301 VVTTDIPQEACMVREFSRLVANIKN-GSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIE 359
V T++PQEACMVREF+RLV IKN G+KP+ WP ISRKTQL++DAVK S+++ ++ I
Sbjct: 299 TVKTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQIS 358
Query: 360 I 360
+
Sbjct: 359 L 359
|
|
| TAIR|locus:2009086 AT1G34200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 195/360 (54%), Positives = 263/360 (73%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAKANNFPPDA 59
M+ ++Q IR G++ + RKLSRAI L+PNA +SA+A+ S +E+A +FAK+NNFPP+
Sbjct: 1 MSGDNQ--IRIGLLSCTNKVRKLSRAINLSPNATISAIATTSSIEEAKSFAKSNNFPPNT 58
Query: 60 KVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
K++ SYE+LL+D D+DAVY P+PT +HV+WA A K KH+L++KP+ALNVAEFD I+ A
Sbjct: 59 KLHSSYESLLEDPDVDAVYFPIPTRLHVEWATLAAIKGKHILLDKPVALNVAEFDQIVEA 118
Query: 120 CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKP 179
CE NGVQ MDGT W+H+PRT ++KEFV+D + FGQ+++++SCFSFA +FLK+DIRVKP
Sbjct: 119 CEVNGVQFMDGTQWMHSPRTDKIKEFVNDLESFGQIKSVYSCFSFAASDDFLKHDIRVKP 178
Query: 180 XXXXXXXXXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239
WY I++IL N+++LPKTV A+ G VLN+AG++LSCGA W+DG A
Sbjct: 179 GLDGLGALGDAGWYTIQAILLVNNFKLPKTVTALSGSVLNDAGIVLSCGALFDWEDGVNA 238
Query: 240 TFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSE 299
T CSFLAN+TM+ITA GT GSL++HDF+IP+ E EA + T+ G V SE
Sbjct: 239 TIYCSFLANLTMEITAIGTKGSLRVHDFVIPYMETEAVFTTSGG--------GCV---SE 287
Query: 300 HVVTTDIPQEACMVREFSRLVANIKN-GSKPEQKWPIISRKTQLIIDAVKTSIERGFEPI 358
H V T++ QEACMV EF+RLV IKN G+KP+ W SR TQL++DAVK SI+ EP+
Sbjct: 288 HKVMTELSQEACMVMEFARLVGEIKNRGAKPDGFWMRFSRNTQLLVDAVKESIDNNLEPV 347
|
|
| TAIR|locus:2013805 AT1G66130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 142/360 (39%), Positives = 215/360 (59%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA-KVYGSYEA 67
+RFG++G A K R +T + NAV+ A++ SLE A FA NN P+ +YGSYE
Sbjct: 7 VRFGLLGCIRFASKFVRTVTESSNAVIIAISDPSLETAKTFATGNNLSPETVTIYGSYEE 66
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
LL+D ++DAVYL +P + +WA++ A+KKKH+L+EKP A + E + I+ ACE NGVQ
Sbjct: 67 LLNDANVDAVYLTMPVTQRARWAVTAAEKKKHVLVEKPPAQDATELEKIVEACEYNGVQF 126
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXXXXX 187
MDGT+W+H+ RT ++++ + D G +R M+S + + L+ K
Sbjct: 127 MDGTIWLHHQRTVKIRDTMFDSGLLGDVRHMYSTMTTPVPEQVLER--LTKEAMGLAGAI 184
Query: 188 XXXXWYGIRSILWANDYELPKTVIAMHGPV-LNEAGVILSCGASLHWDDGRVAT--FSCS 244
WY I + LWA Y++P +V A+ V N G ILSC ASL + T CS
Sbjct: 185 GELGWYPIGAALWAMSYQMPISVRALPSSVSTNSVGTILSCTASLQFGSTATTTAIVHCS 244
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVT- 303
FL+ ++ D+ +G+ GS+Q++D++IP++E++A + + F D+ GW P V
Sbjct: 245 FLSQLSTDLAISGSKGSIQMNDYVIPYKEDKAWFEYTSGAKFVDMHIGWNVTPERVTVDC 304
Query: 304 --TDIPQEACMVREFSRLVANIKNGS-KPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
T QEA M+REF+RLV IK G + +++WP IS+KTQLI+DAVK S++ G E + +
Sbjct: 305 SGTPETQEAMMLREFTRLVEGIKRGDLEADRRWPDISKKTQLIVDAVKKSVDIGCEVVHL 364
|
|
| TIGR_CMR|SPO_0865 SPO_0865 "oxidoreductase, Gfo/Idh/MocA family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 63/172 (36%), Positives = 98/172 (56%)
Query: 5 SQAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG 63
S R+GI+ A IAR+ + AI + V+ A+ASR +A A+A F A+ Y
Sbjct: 4 SAPLFRWGILSTAKIAREQVMPAIARSETGVIHAIASRDAGRAQ--AQAARFSA-ARWYD 60
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123
Y+ALL D D+D VY+PLPT+ HV+WAI A+ KH+L EKP+AL + D I+ A +
Sbjct: 61 GYDALLSDPDVDGVYIPLPTAQHVEWAIRAAEAGKHVLCEKPIALRAEQIDRIIAARDAT 120
Query: 124 GVQLMDGTM-WVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG-DAEFLKN 173
G + + M W H P+ ++++ ++ G LR + FS+ D + ++N
Sbjct: 121 GRVVSEAFMVWYH-PQWHKVRDLIASGA-IGALRQVTGGFSYHNTDPDNMRN 170
|
|
| FB|FBgn0031418 CG3609 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 5.8e-17, P = 5.8e-17
Identities = 76/264 (28%), Positives = 117/264 (44%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
IR+GI A I+ A++ P++ + AVA+R+L++A FA + P K GSYE
Sbjct: 5 IRWGIASAGKISEDFVIALSTLPSSDHKVQAVAARALDRAQEFATKHGIP---KALGSYE 61
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
L D+D VY+ H + A+ + KH+L EKP+A+N + + IL A + N
Sbjct: 62 ELAKSTDVDVVYIGTLNPQHYEVALLMLNNGKHVLCEKPLAMNKKQVEGILAAAKANKRF 121
Query: 127 LMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXXXX 186
M+ P ++KE +S Q GQ++ + F F + + R++
Sbjct: 122 FMEAVWSRFFPSYQRVKELISSGQ-LGQVKDVEVNFGFP-----MPHVDRLQKRELGGGV 175
Query: 187 XXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 246
Y I+ WA E P+ I G LN G+ A+L + GR A S
Sbjct: 176 VYDLGIYTIQVSQWAFQ-EKPEK-IESKG-TLNAEGIDDDVSATLTYSGGRTARMRFSSK 232
Query: 247 ANMTMDITATGTNGSLQLHDFIIP 270
+ GT G + L DF P
Sbjct: 233 EKLGNTAVIKGTKGQVTLIDFWSP 256
|
|
| ASPGD|ASPL0000010504 AN3524 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 46/115 (40%), Positives = 71/115 (61%)
Query: 8 AIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
A++FGI+GAA+IA L P ++ AV++R +KA FAKA++ P +V SYE
Sbjct: 27 ALKFGILGAANIAPLALITPAKSHPEVIVQAVSARDRKKAEEFAKAHSIP---EVRDSYE 83
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121
+L D +ID V++PLP +H +WA+ + KH+L+EKP N E +++ N E
Sbjct: 84 DILSDPNIDCVFIPLPNGLHFEWAVRAIRAGKHVLVEKPSVSNATEAEILFNLPE 138
|
|
| ZFIN|ZDB-GENE-040426-2180 dhdhl "dihydrodiol dehydrogenase (dimeric), like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 75/258 (29%), Positives = 121/258 (46%)
Query: 8 AIRFGIIGAADIARKLSRAI-TLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A R+GI G+ +I+ A+ TLA + AVA+RSLE+A FAK + P K YGSY
Sbjct: 2 ATRWGICGSGNISHDFCVALRTLAEQEHQIVAVAARSLERAQKFAKTHGIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
+ L+ D +ID VY+ + + H+ + K +L EKP +N E +++A EN V
Sbjct: 59 QELVKDPNIDVVYIGVVHTHHLPVGLLFLNAGKSVLCEKPFTMNSRELRQLISATRENNV 118
Query: 126 QLMDGTMWVHN-PRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXX 184
LM+ MW P +++ +S+ Q G+++ + F L + I
Sbjct: 119 FLMEA-MWSRCFPVYSEISRLLSE-QAVGEVKMVSVYFGLN-----LLDRIHTTQKEQGG 171
Query: 185 XXXXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
Y ++ L + E P+++ A G VL +GV S L + R+A S S
Sbjct: 172 GSLLYIGVYCVQFALMVFNGEKPESISAT-G-VLLPSGVDESMVVVLKFSGNRIAVCSSS 229
Query: 245 FLANMTMDITATGTNGSL 262
+ + GT G++
Sbjct: 230 LACALPNTASIFGTTGTI 247
|
|
| UNIPROTKB|G4NB69 MGG_11542 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 218 (81.8 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 58/167 (34%), Positives = 84/167 (50%)
Query: 8 AIRFGIIGAADIARK--LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A++FGI+GAA IA + A T A V+ AVA+R +KA +AK + P +V SY
Sbjct: 27 ALKFGILGAAKIAPMALIGPAQTHA-GVVIQAVAARDKKKAVAYAKKHGIP---QVMDSY 82
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILN----ACE 121
+A+LDD ID +Y PLP +H +W + KH+L+EKP AE +++ N +
Sbjct: 83 QAILDDPSIDCIYNPLPNGLHYEWTLRALAAGKHVLLEKPSTATAAEAEILFNHPLLQQK 142
Query: 122 ENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF-GQLRTMHSCFSFAGD 167
LM+ + +P + FV P Q T F FA D
Sbjct: 143 PKAPVLMEAVHYRLHPAWSLFMSFVDPPNVVHAQAITKFPRFLFADD 189
|
|
| ZFIN|ZDB-GENE-040927-25 zgc:101723 "zgc:101723" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 2.1e-15, P = 2.1e-15
Identities = 71/260 (27%), Positives = 125/260 (48%)
Query: 8 AIRFGIIGAADIARKLSRAI-TL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI A I+ + A+ TL A + AVA+R L A FA+ ++ P + YGSY
Sbjct: 3 ALRWGICSAGKISHDFTVALRTLPAEQHQVVAVAARELAHAQEFAQKHSIP---RAYGSY 59
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L +D +ID VY+ H++ + KK++L EKP+A+N+ E +++A + V
Sbjct: 60 EELAEDPEIDVVYVGTIHPHHLRVGLLFMNAKKNVLCEKPLAMNLKEVQQMISAARRSDV 119
Query: 126 QLMDGTMWVHN-PRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPXXXXX 184
LM+ +W P + ++ +S GQ++ + + F A L R
Sbjct: 120 FLMEA-VWTRFFPASLEISRLLSQ-NAVGQVKLVRADFGAA-----LLGVPRAVQKHLGG 172
Query: 185 XXXXXXXWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
Y I+ +L + E P+ + A G L + GV + +L + R+A +C+
Sbjct: 173 GALLDIGIYCIQFVLMVFNGEKPEQIQAS-GVCL-DTGVDEAMVVTLKFSGHRLAVCTCT 230
Query: 245 FLANMTMDITATGTNGSLQL 264
A + + GT G++++
Sbjct: 231 VAAELPNEALIVGTEGTIKV 250
|
|
| ASPGD|ASPL0000075159 AN8642 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 47/156 (30%), Positives = 79/156 (50%)
Query: 4 ESQAAIRFGIIGAADI-ARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY 62
+S A++ G++ +A I A + + P+ L +ASR+ + + AK +F + Y
Sbjct: 25 KSADALKLGVLSSAQINAAAIIHPVETHPHITLYGIASRNQSTSQSQAKKYHFK---QAY 81
Query: 63 GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122
GSY+ALLDD +ID VY+ P H +W KH+L EKP N E ++ +E
Sbjct: 82 GSYQALLDDPEIDVVYISTPNGQHFEWTTKAINAGKHVLCEKPFMSNGEEARKVVELAKE 141
Query: 123 NGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ-LRT 157
GV + + W +P + + + + +G+ LRT
Sbjct: 142 KGVVVEEAFHWQFHPAAHRFRALLESGE-YGRVLRT 176
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9SZ83 | Y4967_ARATH | 1, ., -, ., -, ., - | 0.6869 | 0.9889 | 0.9889 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| COG0673 | 342 | COG0673, MviM, Predicted dehydrogenases and relate | 4e-44 | |
| pfam01408 | 120 | pfam01408, GFO_IDH_MocA, Oxidoreductase family, NA | 9e-29 | |
| pfam02894 | 111 | pfam02894, GFO_IDH_MocA_C, Oxidoreductase family, | 2e-04 | |
| PRK13304 | 265 | PRK13304, PRK13304, L-aspartate dehydrogenase; Rev | 0.001 | |
| PRK11579 | 346 | PRK11579, PRK11579, putative oxidoreductase; Provi | 0.001 |
| >gnl|CDD|223745 COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 4e-44
Identities = 94/354 (26%), Positives = 141/354 (39%), Gaps = 26/354 (7%)
Query: 9 IRFGIIGAADIARK--LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
IR GIIGA IA K L L L AV R E+A FA+ K Y E
Sbjct: 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA---KAYTDLE 60
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
LL D DIDAVY+ P ++H + A++ + KH+L EKP+AL + E + ++ + GV+
Sbjct: 61 ELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVK 120
Query: 127 LMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGA 186
LM G +P +KE + D G++ ++ + FS R G GA
Sbjct: 121 LMVGFNRRFDPAVQALKELI-DSGALGEVVSVQASFSRDRPNPPPPPWWRFDRADGG-GA 178
Query: 187 LGDAGWYGIRSILWANDYELPKTVIA-MHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
L D G + + + + P +V A EAGV S A L +++G +A S
Sbjct: 179 LLDLGIHDLDLLRFLLGSPEPVSVSAKARNSPPGEAGVDDSASAILRFENGVLAVSWASR 238
Query: 246 LANMTMDITAT--GTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVT 303
A D+ GT GSL++ D + D+ G L V
Sbjct: 239 TAAGGYDVRLEVYGTKGSLEVDDG-------NPTGELLDGRIGLDVRGGDGELLL---VP 288
Query: 304 TDIPQEACMVREFSRLVAN-IKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFE 356
+ F+ + + E + K + +A S + G
Sbjct: 289 RRGNPYEGELEAFADAIRGGGEPLVSGED-----ALKALRLAEAAYESAKEGRT 337
|
Length = 342 |
| >gnl|CDD|201778 pfam01408, GFO_IDH_MocA, Oxidoreductase family, NAD-binding Rossmann fold | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 9e-29
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 5/124 (4%)
Query: 9 IRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
+R GI+GA I R+ RA+ + A L + +A A++ P Y E
Sbjct: 1 LRVGIVGAGKIGRRHLRALNESQDGAELVGILDPDPARAEAVAESFGVP----AYSDLEE 56
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
LL D DIDAV + P +H + A++ + KH+L EKP+A V E ++ E+ GV+L
Sbjct: 57 LLADPDIDAVSVATPPGLHFELALAALEAGKHVLCEKPLATTVEEAKELVELAEKAGVRL 116
Query: 128 MDGT 131
G
Sbjct: 117 SVGF 120
|
This family of enzymes utilise NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. Length = 120 |
| >gnl|CDD|217272 pfam02894, GFO_IDH_MocA_C, Oxidoreductase family, C-terminal alpha/beta domain | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 151 RFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTV 210
G++R++ F F + R + D G GALGD G + + + W E P V
Sbjct: 8 VLGEVRSVSVDFRFDRAQRP--SRWRWRRDKKGGGALGDLGIHDLDLLRWLFG-EPPSVV 64
Query: 211 IAMHGPVLNEAGVILSCG-ASLHWDDGRVATFSCSFLANMTMDITA 255
A G L AG A+L + G+VAT SF ++ +
Sbjct: 65 AAAGGRQLAPAGEYEDAAFANLEFGSGKVATLESSFSHSLDIRYVI 110
|
This family of enzymes utilise NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. Length = 111 |
| >gnl|CDD|237343 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 12 GIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLD 70
GI+G IA +++AI NA L A R+LEKA N A AK S + L++
Sbjct: 5 GIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTG----AKACLSIDELVE 60
Query: 71 DKD-------IDAVYLPLPTSMH 86
D D ++AV +P S+
Sbjct: 61 DVDLVVECASVNAVEEVVPKSLE 83
|
Length = 265 |
| >gnl|CDD|183212 PRK11579, PRK11579, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 8 AIRFGIIGAADIARKLSRA--ITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
IR G+IG A K A I P L+AV+S K KA+ P V
Sbjct: 4 KIRVGLIGYG-YASKTFHAPLIAGTPGLELAAVSSSDATKV----KAD--WPTVTVVSEP 56
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAE 112
+ L +D +ID + +P P H A + + KH++++KP + +++
Sbjct: 57 QHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLSQ 103
|
Length = 346 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| PRK11579 | 346 | putative oxidoreductase; Provisional | 100.0 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 100.0 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 100.0 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 100.0 | |
| KOG2742 | 367 | consensus Predicted oxidoreductase [General functi | 99.98 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 99.97 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 99.96 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 99.89 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 99.84 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 99.82 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 99.82 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 99.82 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 99.81 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 99.81 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 99.8 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 99.78 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 99.77 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 99.72 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 99.7 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 99.67 | |
| PF02894 | 115 | GFO_IDH_MocA_C: Oxidoreductase family, C-terminal | 99.3 | |
| PF08635 | 142 | ox_reductase_C: Putative oxidoreductase C terminal | 99.3 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 99.24 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 99.2 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 99.17 | |
| COG4693 | 361 | PchG Oxidoreductase (NAD-binding), involved in sid | 99.15 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 99.12 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 99.1 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 99.08 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 99.04 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.01 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.99 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 98.98 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 98.97 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 98.96 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.96 | |
| COG4091 | 438 | Predicted homoserine dehydrogenase [Amino acid tra | 98.89 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 98.85 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 98.79 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.78 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.73 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 98.73 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.7 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.7 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 98.69 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.68 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 98.67 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 98.66 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 98.65 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.61 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.6 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.6 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 98.6 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 98.57 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 98.57 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.53 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 98.52 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.52 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.51 | |
| COG3804 | 350 | Uncharacterized conserved protein related to dihyd | 98.5 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.47 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.46 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.46 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 98.46 | |
| PLN02696 | 454 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | 98.45 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 98.44 | |
| PRK06813 | 346 | homoserine dehydrogenase; Validated | 98.43 | |
| PLN02700 | 377 | homoserine dehydrogenase family protein | 98.43 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 98.41 | |
| PLN02775 | 286 | Probable dihydrodipicolinate reductase | 98.37 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.36 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 98.34 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 98.33 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.33 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.3 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.29 | |
| KOG0455 | 364 | consensus Homoserine dehydrogenase [Amino acid tra | 98.28 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.27 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.26 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 98.26 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.26 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 98.26 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 98.25 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.22 | |
| PLN02256 | 304 | arogenate dehydrogenase | 98.21 | |
| PLN02712 | 667 | arogenate dehydrogenase | 98.2 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 98.19 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 98.18 | |
| TIGR02130 | 275 | dapB_plant dihydrodipicolinate reductase. This nar | 98.18 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 98.16 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 98.16 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.14 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.12 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.12 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.1 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.09 | |
| COG0743 | 385 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 98.08 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.07 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 98.07 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.05 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.04 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 98.03 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.01 | |
| PLN02358 | 338 | glyceraldehyde-3-phosphate dehydrogenase | 98.0 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 97.99 | |
| PLN02712 | 667 | arogenate dehydrogenase | 97.98 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 97.98 | |
| smart00846 | 149 | Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, | 97.97 | |
| TIGR00243 | 389 | Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras | 97.94 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 97.94 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.93 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.93 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 97.92 | |
| PF02670 | 129 | DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re | 97.9 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.88 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 97.87 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 97.83 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 97.8 | |
| PRK12464 | 383 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 97.8 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 97.78 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 97.78 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.78 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.78 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.76 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 97.76 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.76 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.75 | |
| PF00044 | 151 | Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, | 97.75 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 97.74 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.73 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.72 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 97.71 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 97.71 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.71 | |
| PRK05722 | 495 | glucose-6-phosphate 1-dehydrogenase; Validated | 97.71 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.7 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.68 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 97.68 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 97.67 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.67 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 97.66 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.65 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.64 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.64 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.63 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.63 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.61 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.61 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.61 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.6 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 97.59 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 97.57 | |
| KOG0172 | 445 | consensus Lysine-ketoglutarate reductase/saccharop | 97.55 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.55 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.54 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 97.53 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.53 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 97.52 | |
| COG0057 | 335 | GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt | 97.52 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 97.51 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.48 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 97.48 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.48 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.47 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 97.46 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 97.45 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.39 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 97.39 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.38 | |
| TIGR00871 | 482 | zwf glucose-6-phosphate 1-dehydrogenase. This is a | 97.38 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.38 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.37 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 97.36 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 97.35 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 97.35 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.35 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.35 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 97.35 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.35 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.34 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.33 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 97.33 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 97.33 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.32 | |
| COG4569 | 310 | MhpF Acetaldehyde dehydrogenase (acetylating) [Sec | 97.32 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.26 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.25 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 97.25 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.22 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.2 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 97.19 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 97.19 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 97.18 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 97.18 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 97.16 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 97.13 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 97.11 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 97.1 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 97.09 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.08 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 97.06 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 97.06 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 97.04 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.0 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 96.99 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.98 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.97 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.97 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.92 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 96.91 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 96.86 | |
| PRK07729 | 343 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 96.85 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 96.83 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.8 | |
| ), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF02844">PF02844 | 100 | GARS_N: Phosphoribosylglycinamide synthetase, N do | 96.8 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 96.78 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 96.77 | |
| PRK13535 | 336 | erythrose 4-phosphate dehydrogenase; Provisional | 96.74 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.7 | |
| COG1810 | 224 | Uncharacterized protein conserved in archaea [Func | 96.69 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.68 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.67 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.66 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 96.66 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.65 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.64 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.62 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 96.61 | |
| PRK15425 | 331 | gapA glyceraldehyde-3-phosphate dehydrogenase A; P | 96.61 | |
| PRK07403 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Reviewed | 96.59 | |
| PRK08955 | 334 | glyceraldehyde-3-phosphate dehydrogenase; Validate | 96.58 | |
| PLN03096 | 395 | glyceraldehyde-3-phosphate dehydrogenase A; Provis | 96.57 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 96.56 | |
| PTZ00023 | 337 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.53 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.51 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 96.49 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.49 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 96.49 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 96.48 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 96.48 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 96.47 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 96.46 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 96.46 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 96.44 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.43 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.4 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.39 | |
| COG1832 | 140 | Predicted CoA-binding protein [General function pr | 96.38 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.37 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 96.36 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 96.34 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 96.33 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.33 | |
| PLN02928 | 347 | oxidoreductase family protein | 96.33 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.33 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 96.32 | |
| COG0151 | 428 | PurD Phosphoribosylamine-glycine ligase [Nucleotid | 96.32 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.31 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.31 | |
| TIGR03450 | 351 | mycothiol_INO1 inositol 1-phosphate synthase, Acti | 96.31 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.3 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.3 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.29 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.26 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.26 | |
| TIGR03025 | 445 | EPS_sugtrans exopolysaccharide biosynthesis polypr | 96.25 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.25 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 96.23 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 96.22 | |
| PLN02237 | 442 | glyceraldehyde-3-phosphate dehydrogenase B | 96.19 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.19 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.15 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 96.14 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.12 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.11 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.11 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.1 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.08 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.06 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 96.05 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.04 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.02 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 96.01 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 96.01 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 96.0 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.98 | |
| TIGR03023 | 451 | WcaJ_sugtrans Undecaprenyl-phosphate glucose phosp | 95.95 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.9 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.86 | |
| PRK12853 | 482 | glucose-6-phosphate 1-dehydrogenase; Provisional | 95.83 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 95.83 | |
| PRK10124 | 463 | putative UDP-glucose lipid carrier transferase; Pr | 95.8 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.8 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 95.8 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 95.79 | |
| PTZ00434 | 361 | cytosolic glyceraldehyde 3-phosphate dehydrogenase | 95.78 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 95.72 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 95.68 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.66 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 95.65 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.65 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.64 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.64 | |
| PLN02494 | 477 | adenosylhomocysteinase | 95.6 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 95.6 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.59 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 95.59 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.59 | |
| PLN02477 | 410 | glutamate dehydrogenase | 95.58 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.58 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 95.57 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.56 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 95.55 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.55 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 95.52 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 95.5 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 95.44 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 95.43 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.42 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 95.38 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.37 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 95.35 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.35 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 95.32 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 95.28 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 95.23 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 95.22 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 95.22 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 95.19 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 95.15 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.14 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 95.13 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.13 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 95.08 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.07 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 95.07 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 95.04 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 95.04 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.02 | |
| PRK06091 | 555 | membrane protein FdrA; Validated | 95.01 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.94 | |
| TIGR01361 | 260 | DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate | 94.93 | |
| PRK06395 | 435 | phosphoribosylamine--glycine ligase; Provisional | 94.92 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.91 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.91 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.86 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 94.82 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 94.82 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.81 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.8 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.75 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 94.73 | |
| TIGR03022 | 456 | WbaP_sugtrans Undecaprenyl-phosphate galactose pho | 94.72 | |
| COG0364 | 483 | Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydr | 94.71 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 94.7 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.69 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.68 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 94.68 | |
| PLN02285 | 334 | methionyl-tRNA formyltransferase | 94.66 | |
| PTZ00353 | 342 | glycosomal glyceraldehyde-3-phosphate dehydrogenas | 94.65 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.57 | |
| PRK13789 | 426 | phosphoribosylamine--glycine ligase; Provisional | 94.54 | |
| TIGR01534 | 327 | GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, | 94.53 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 94.52 | |
| PRK00005 | 309 | fmt methionyl-tRNA formyltransferase; Reviewed | 94.45 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.41 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.38 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 94.38 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.34 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.33 | |
| PF00479 | 183 | G6PD_N: Glucose-6-phosphate dehydrogenase, NAD bin | 94.29 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 94.28 | |
| PRK06988 | 312 | putative formyltransferase; Provisional | 94.27 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.19 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.13 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.13 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 94.1 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.08 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 94.07 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 93.97 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 93.96 | |
| PRK12595 | 360 | bifunctional 3-deoxy-7-phosphoheptulonate synthase | 93.95 | |
| PRK00885 | 420 | phosphoribosylamine--glycine ligase; Provisional | 93.94 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.92 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.88 | |
| cd05284 | 340 | arabinose_DH_like D-arabinose dehydrogenase. This | 93.85 | |
| PF13727 | 175 | CoA_binding_3: CoA-binding domain; PDB: 3NKL_B. | 93.84 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 93.83 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 93.82 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 93.72 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 93.7 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 93.66 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 93.61 | |
| PRK05784 | 486 | phosphoribosylamine--glycine ligase; Provisional | 93.55 | |
| TIGR03013 | 442 | EpsB_2 sugar transferase, PEP-CTERM system associa | 93.45 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 93.43 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 93.34 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.3 | |
| PRK15204 | 476 | undecaprenyl-phosphate galactose phosphotransferas | 93.28 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 93.27 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.23 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.23 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 93.14 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 93.12 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 93.06 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 93.06 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 93.02 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.0 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 92.97 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 92.94 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 92.93 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 92.92 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 92.85 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 92.84 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 92.83 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 92.78 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 92.77 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 92.75 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 92.74 | |
| TIGR00460 | 313 | fmt methionyl-tRNA formyltransferase. The top-scor | 92.73 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 92.65 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 92.64 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.63 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 92.63 | |
| PRK13396 | 352 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 92.61 | |
| TIGR00877 | 423 | purD phosphoribosylamine--glycine ligase. This enz | 92.6 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 92.57 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.56 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 92.55 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 92.45 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 92.42 | |
| cd08256 | 350 | Zn_ADH2 Alcohol dehydrogenases of the MDR family. | 92.41 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.4 | |
| cd08240 | 350 | 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy | 92.33 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 92.32 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 92.27 | |
| KOG1255 | 329 | consensus Succinyl-CoA synthetase, alpha subunit [ | 92.25 | |
| PRK05198 | 264 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 92.22 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 92.22 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 92.19 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 92.11 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 91.99 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.98 | |
| COG0223 | 307 | Fmt Methionyl-tRNA formyltransferase [Translation, | 91.89 | |
| cd08269 | 312 | Zn_ADH9 Alcohol dehydrogenases of the MDR family. | 91.86 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 91.84 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 91.83 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.81 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 91.81 | |
| PRK12854 | 484 | glucose-6-phosphate 1-dehydrogenase; Provisional | 91.81 | |
| PRK08673 | 335 | 3-deoxy-7-phosphoheptulonate synthase; Reviewed | 91.75 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 91.66 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 91.61 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 91.58 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 91.48 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 91.43 | |
| TIGR01362 | 258 | KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. | 91.38 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 91.38 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 91.38 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 91.31 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 91.29 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 91.2 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.03 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 91.02 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 91.0 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 90.97 | |
| COG2201 | 350 | CheB Chemotaxis response regulator containing a Ch | 90.94 | |
| PRK08462 | 445 | biotin carboxylase; Validated | 90.93 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 90.88 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 90.88 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 90.83 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 90.74 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 90.72 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 90.67 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 90.67 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 90.64 | |
| COG3367 | 339 | Uncharacterized conserved protein [Function unknow | 90.59 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 90.58 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 90.49 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 90.47 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 90.44 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 90.4 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 90.31 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 90.29 | |
| PLN02539 | 491 | glucose-6-phosphate 1-dehydrogenase | 90.28 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 90.22 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 90.17 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 90.16 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 90.15 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 90.14 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 90.06 | |
| COG4566 | 202 | TtrR Response regulator [Signal transduction mecha | 90.06 | |
| PLN00106 | 323 | malate dehydrogenase | 89.9 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 89.87 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 89.87 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 89.75 | |
| PRK12457 | 281 | 2-dehydro-3-deoxyphosphooctonate aldolase; Provisi | 89.67 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 89.66 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 89.56 | |
| PRK07411 | 390 | hypothetical protein; Validated | 89.54 |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-55 Score=410.34 Aligned_cols=335 Identities=16% Similarity=0.130 Sum_probs=259.6
Q ss_pred ceeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+++||||||+|.+|. .|++.+...|++++++|||++++++. ++++. ..+|+|++++|+++++|+|+|+||+..
T Consensus 3 ~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~~---~~~~~~~~ell~~~~vD~V~I~tp~~~ 76 (346)
T PRK11579 3 DKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWPT---VTVVSEPQHLFNDPNIDLIVIPTPNDT 76 (346)
T ss_pred CcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCCC---CceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 369999999999998 58899999999999999999987653 45543 368999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|++++++||++||||+||||++.|++++++|.++|+++|+++++++++||+|.++++|++| ++|.||+|..++.++..+
T Consensus 77 H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~~~~~~~~~ 155 (346)
T PRK11579 77 HFPLAKAALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALL-AEGVLGEVAYFESHFDRF 155 (346)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHH-hcCCCCCeEEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 999999999999877543
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.+. ...+|+..+.. |||++.|+|+|.+|+++||+| .|.+|++.........+.+|.+.++++|+||.. ++..++
T Consensus 156 ~~~--~~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G--~~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g~~-~~~~s~ 229 (346)
T PRK11579 156 RPQ--VRQRWREQGGP-GSGIWYDLAPHLLDQAIQLFG--LPVSITVDLAQLRPGAQSTDYFHAILSYPQRRV-VLHGTM 229 (346)
T ss_pred CCC--CccccccCCCC-CCcchhhhhhhHHHHHHHHhC--CCeEEEEEeeeecCCCCCCceEEEEEEECCeEE-EEEEEe
Confidence 321 23467766554 559999999999999999999 589999876444334567899999999999855 788888
Q ss_pred eeCC-ceeEEEEeccceEEEcceeccC----CC---CcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHH
Q 018020 246 LANM-TMDITATGTNGSLQLHDFIIPF----RE---EEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFS 317 (362)
Q Consensus 246 ~~~~-~~~~~v~G~~G~i~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
.... ..+++|+|++|++.+.+..... .. ....+....... ... ..... ... ..........|..+++
T Consensus 230 ~~~~~~~~~~i~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~ 304 (346)
T PRK11579 230 LAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRDG--VLT-LVEGE-ERV-EETLLTLPGNYPAYYA 304 (346)
T ss_pred eecCCCCEEEEEecCceEEEcCCCccHHHHhCCCCCCCCCCCCCCccC--eEE-EecCC-ccc-eeeecCCCCCHHHHHH
Confidence 7653 4589999999999765421110 00 000000000000 000 00000 000 0000111234667899
Q ss_pred HHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 318 RLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 318 ~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+|+++|++|.+|..+ .|+++++++|++|+++|+++| ++|.|.
T Consensus 305 ~f~~~i~~~~~~~~~-~e~a~~~l~i~~a~~~Sa~~g-~~v~l~ 346 (346)
T PRK11579 305 AIRDALNGDGENPVP-ASQAIQVMELIELGIESAKHR-ATLCLA 346 (346)
T ss_pred HHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhcC-CEEecC
Confidence 999999988777665 788999999999999999999 999873
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=398.49 Aligned_cols=335 Identities=27% Similarity=0.286 Sum_probs=271.4
Q ss_pred ceeEEEEEeccHHH-HHHHHHHhcCCC-cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIA-RKLSRAITLAPN-AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g-~~~~~~~~~~~~-~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+++||||||+|.++ +.|++.+++.++ ++++++||++++++++++++|+++ ..|+|++++|+++++|+|+|+||+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~---~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIA---KAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEEcCCCh
Confidence 58999999999765 469999999987 799999999999999999999986 6899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|++++++||++|||||||||++.|++|+++|.++|+++|+++++++++||+|.++++|++| ++|.||+|.++++.+..
T Consensus 79 ~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li-~~g~lG~v~~~~~~~~~ 157 (342)
T COG0673 79 LHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELI-DSGALGEVVSVQASFSR 157 (342)
T ss_pred hhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHH-hcCCcCceEEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999887
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccc-cCCCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPV-LNEAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~-~~~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
.....+....|+..... +||.+.|+|+|.+|+++||+|..++.+|++..... ....+.+|.+.++++|+||.......
T Consensus 158 ~~~~~~~~~~~~~~~~~-~gG~l~d~giH~lD~~~~l~G~~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~~~g~~~~~~~ 236 (342)
T COG0673 158 DRPNPPPPPWWRFDRAD-GGGALLDLGIHDLDLLRFLLGSPEPVSVSAKARNSPPGEAGVDDSASAILRFENGVLAVSWA 236 (342)
T ss_pred cccccCCccceeccccc-CCCchhhhHHHHHHHHHHHcCCcchhheeeecccCCCCcccccceEEEEEEecCCceEEEEE
Confidence 65431222344455554 44999999999999999999953578888885443 24567899999999999998888887
Q ss_pred eeeeCCce--eEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHH
Q 018020 244 SFLANMTM--DITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVA 321 (362)
Q Consensus 244 ~~~~~~~~--~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (362)
++...... .++|+|++|++.+++........ ....... .....+.. . ........+..++.+|++
T Consensus 237 ~~~~~~~~~~~~~i~G~~G~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~------~-~~~~~~~~~~~~~~~f~~ 303 (342)
T COG0673 237 SRTAAGGYDVRLEVYGTKGSLEVDDGNPTGELL--DGRIGLD----VRGGDGEL------L-LVPRRGNPYEGELEAFAD 303 (342)
T ss_pred EeeccCCcCceEEEEeccceEEeccccccccce--eeecccc----ccCCCccc------c-CCCcccchhHHHHHHHHH
Confidence 77765533 37899999999998643222110 0000000 00000000 0 001111168899999999
Q ss_pred hhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 322 NIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 322 ~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+++++.++.. ..++++.++++++++++|.+++ ++|.+.
T Consensus 304 ~i~~~~~~~~-~~~~~~~~~~~~~a~~~s~~~~-~~v~~~ 341 (342)
T COG0673 304 AIRGGGEPLV-SGEDALKALRLAEAAYESAKEG-RTVKLA 341 (342)
T ss_pred HHhcCCCCCC-CHHHHHHHHHHHHHHHHhhccC-ceeeCC
Confidence 9998877744 4788999999999999999999 999874
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=387.02 Aligned_cols=332 Identities=16% Similarity=0.136 Sum_probs=253.4
Q ss_pred eeEEEEEeccHHHH-HHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIAR-KLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~-~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||||+|.++. .|++.+.. .+++++++|||++++++ +++++|+.. .+|+|+++||+++++|+|+|+||+..
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~---~~~~~~~ell~~~~iD~V~I~tp~~~ 76 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYSHI---HFTSDLDEVLNDPDVKLVVVCTHADS 76 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcCCC---cccCCHHHHhcCCCCCEEEEeCCchH
Confidence 48999999999764 68887754 56899999999998655 777888642 68999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|++++++|+++||||+||||++.|++++++|.++|+++|+++++++++||+|.++++|++| ++|.||+|+.+++++.+.
T Consensus 77 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li-~~g~iG~i~~i~~~~~~~ 155 (344)
T PRK10206 77 HFEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAI-ESGKLGEIVEVESHFDYY 155 (344)
T ss_pred HHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHH-HcCCCCCeEEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999887553
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.+. |...+...+||.++|+|+|.+|+++||+| +|++|++...........+|++.++++| +|.++++.++|
T Consensus 156 ~~~------~~~~~~~~~gG~l~d~g~H~ld~~~~l~G--~~~~v~a~~~~~~~~~~~~d~~~~~l~f-~~~~~~i~~s~ 226 (344)
T PRK10206 156 RPV------AETKPGLPQDGAFYGLGVHTMDQIISLFG--RPDHVAYDIRSLRNKANPDDTFEAQLFY-GDLKAIVKTSH 226 (344)
T ss_pred CCc------cccccCCCCCceeechhHHHHHHHHHHcC--CCeEEEEEeecccCCCCCCceEEEEEEe-CCEEEEEEEee
Confidence 322 11223334679999999999999999999 6899998754433344678999999999 67899999999
Q ss_pred eeCCc-eeEEEEeccceEEEcceeccCCCCcceEEec---ccccccc-ccccccc--CCccee-eecCCchhHHHHHHHH
Q 018020 246 LANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTN---TRCFFND-LVTGWVP--LPSEHV-VTTDIPQEACMVREFS 317 (362)
Q Consensus 246 ~~~~~-~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 317 (362)
..+.. .+++|+|++|++...+..... ..+... ....+.. ...+... ...... ..........|..++.
T Consensus 227 ~~~~~~~~~~i~G~~G~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (344)
T PRK10206 227 LVKIDYPKFIVHGKKGSFIKYGIDQQE----TSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREEMKPEMGDYGRVYD 302 (344)
T ss_pred eecCCCCeEEEEeccceEEEecCCccH----HHHhCCCCCCCCCCCcCCCCceEEEeccCCcceeeeeCCCCCCHHHHHH
Confidence 77654 479999999999886432110 000000 0000000 0000000 000000 0000111235788999
Q ss_pred HHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceee
Q 018020 318 RLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360 (362)
Q Consensus 318 ~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l 360 (362)
+|+++|++|.+|..+ .|+++++++|++|+++|+.- .+|.|
T Consensus 303 ~f~~ai~~g~~p~v~-~e~al~~l~iiea~~~sa~~--~~~~~ 342 (344)
T PRK10206 303 ALYQTLTHGAPNYVK-ESEVLTNLEILERGFEQASP--ATVTL 342 (344)
T ss_pred HHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHhcCCc--cceec
Confidence 999999988776654 88899999999999998653 45544
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-50 Score=354.71 Aligned_cols=335 Identities=39% Similarity=0.590 Sum_probs=286.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|+||+|+|.|+..++..+...| +.+|+||+|++.++++.||+.+++| ++++|.|++|+++++++|+|+|++|+.
T Consensus 5 ~~ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~~ 83 (351)
T KOG2741|consen 5 ATIRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPNP 83 (351)
T ss_pred ceeEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCCc
Confidence 5799999999999999999999988 8999999999999999999999996 679999999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|+++++.+|.+|||||||||+|.|++|+++|+++|+.+|+.+|.|..+||.|.+.++|++| .+|.+|+|..+++.++.
T Consensus 84 qH~evv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l-~~~~~Gdvk~v~~~~~f 162 (351)
T KOG2741|consen 84 QHYEVVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELL-SSGVLGDVKSVEVEFGF 162 (351)
T ss_pred cHHHHHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHH-hccccccceEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 79999999999999888
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHH--ccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEE
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWA--NDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l--~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~ 242 (362)
+.+....+..-|......|+|+++|+|+|.+-+..|. ++ .|.++........+..++++++.+++.|.+|..+.+.
T Consensus 163 ~~~~~~l~~~~r~~~~~~g~G~l~D~g~Y~i~~~~~~~~f~--~~p~~~~~~g~v~n~~~v~~s~~~~l~f~~~~~~~~~ 240 (351)
T KOG2741|consen 163 PFPEDELPHKSRLRTGLLGGGALGDLGIYPIQAALWVNNFQ--EPPEVIAVDGRVLNSEGVDDSVGAILDFTGGRTALIL 240 (351)
T ss_pred CcchhhcccccchheecccCceehhhHHHHHHHHHHHHHhc--CCcceeecCcccccCCCcccccceEEEeCCCceEEEE
Confidence 7765555555556666677899999999999999999 65 5667777755555677899999999999999999999
Q ss_pred EeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHh
Q 018020 243 CSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVAN 322 (362)
Q Consensus 243 ~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (362)
|++.........|.||+|++.+.|.+..+......+..... .|.. .+.+.+.........+..++..+..|
T Consensus 241 cSf~~~l~n~~~i~GtkG~~~l~d~~~p~~~~~~~~~~~~~--------~~~~-~p~~~~~~~~~n~~~m~~E~~~v~~~ 311 (351)
T KOG2741|consen 241 CSFLEKLTNEAVITGTKGSLKLLDYWIPTKETLSRFGGREK--------EFPL-LPGEDVDTHYDNEAGMVYEAERVREC 311 (351)
T ss_pred EehhhhCCCceEEEecccceeeeeccccceeeeeeecCCCc--------cccC-CCCCCcccccccchhhHHHHHHHHHH
Confidence 99999999999999999999999877666543222222211 2221 11122335556778899999999999
Q ss_pred hhcCCCCC-CCchHhHHHHHHHHHHHHHHHhhC
Q 018020 323 IKNGSKPE-QKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 323 i~~g~~~~-~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
|++|.... .-+..+.+.+|.|+|+++++...+
T Consensus 312 I~~~~~ea~~~~~~~S~~~~~i~D~i~~qi~v~ 344 (351)
T KOG2741|consen 312 IKKGGKEADDIPHAESLKLMLIVDAIRRQIGVV 344 (351)
T ss_pred HHhcCcCCCCCCchHHHHHHHHHHHHHHHhccc
Confidence 99655433 333455899999999999999877
|
|
| >KOG2742 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=240.21 Aligned_cols=330 Identities=16% Similarity=0.126 Sum_probs=237.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+. |||+|+|..++..+|.++..+ +++.|++.|.++.+.+.++.-+.+ ..++.++++|.++++|.|+|+.|+..|+
T Consensus 3 Pg-v~v~GTg~~arv~iP~l~e~~-f~v~A~w~Rt~~ea~a~aa~~~v~---~~t~~~deiLl~~~vdlv~i~lpp~~~~ 77 (367)
T KOG2742|consen 3 PG-VGVFGTGIFARVLIPLLKEEG-FEVKAIWGRTKTEAKAKAAEMNVR---KYTSRLDEILLDQDVDLVCISLPPPLHA 77 (367)
T ss_pred Cc-eeEeccChhHhhhhhhhhhcc-chHhhhhchhhhHHHHhhhccchh---hccccchhhhccCCcceeEeccCCccce
Confidence 66 999999999998899999997 999999999766666666666654 5677999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecCC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD 167 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~ 167 (362)
+++.+++.+||||+||||. .++.+++.+.+.+....+...+++++||.|.+..+|++| +++..|++..+..++.....
T Consensus 78 eI~~kal~~Gk~Vvcek~a-~~~d~~k~~~~~~~s~~L~~lv~~~lrflp~f~~~k~~i-e~i~~g~vv~~~~~v~~~~l 155 (367)
T KOG2742|consen 78 EIVVKALGIGKHVVCEKPA-TNLDAAKMVVALAYSPKLMSLVGHVLRFLPAFVTAKELI-EEIYVGEVVRCDVRVDRGRL 155 (367)
T ss_pred eeeeccccCCceEEeccCC-cchhhhhhHHHHhhchhHHHHhhhhhhhhHHHHHHHHHH-HhccCCCeeeeeeeeeccee
Confidence 9999999999999999998 999999999999999999999999999999999999999 89999999988887765432
Q ss_pred cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeec--cccCCC--------CeeEeeEEEEEeCCCc
Q 018020 168 AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHG--PVLNEA--------GVILSCGASLHWDDGR 237 (362)
Q Consensus 168 ~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~--~~~~~~--------~~~d~~~~~~~~~~G~ 237 (362)
-. ...+|+.++..+ ||.++++|+|.||+++.|+| .|-++.+-.. ...... ...+.+...+...+|.
T Consensus 156 ~~-k~~~W~~~p~~g-gG~l~d~Gsh~Idl~~~L~G--~~~~~~~gl~~~~~~~~~ei~g~~~I~~~~~~~~~~l~~~~i 231 (367)
T KOG2742|consen 156 FR-KSYNWKCDPLMG-GGFLYDMGSHLIDLLTSLLG--TPASVVHGLLSQRTRQPLEIEGIRRITLHDFCLFQMLPIGGI 231 (367)
T ss_pred cc-cCCccccccccC-CceeecchHHHHHHHHHHhC--CchhhhhhhhhhhccCchhhcccceeeecchhhhceeeccce
Confidence 11 124899888875 59999999999999999999 4555443321 111111 2334444455556888
Q ss_pred EEEEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHH
Q 018020 238 VATFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFS 317 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
+++...+.... ..++.|+|++|++...... . +............ .+. ....+.....+.-.....+++
T Consensus 232 ~~t~~l~~~~~-~~~~~I~Gs~Gt~~~~g~D---p-qE~~l~~~m~~~~----~~~---g~d~~~~Y~~g~~~~V~a~~~ 299 (367)
T KOG2742|consen 232 LSTVALSCGPG-FMEVRIVGSKGTLVVRGGD---P-QEEQLHGDMLPVS----EGG---GTDRPILYLKGTLWMVPAERD 299 (367)
T ss_pred EEeeecccCCc-ceEEEEEecCceEEEecCC---c-chhhhhccccccC----CCC---CccceeEeecCccccccHHHH
Confidence 87777776633 4789999999999998543 0 0101111100000 011 111111111111112344556
Q ss_pred HHHHhhhcCCC---C--CCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 318 RLVANIKNGSK---P--EQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 318 ~~~~~i~~g~~---~--~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
.|.....+... | ....-+|++....+.++++.|+++| +|+.|+
T Consensus 300 ~f~~~~s~ks~~~tp~~~~~~F~d~l~~a~V~~aie~s~k~g-q~~~Ve 347 (367)
T KOG2742|consen 300 AFHNPESTKSWVQTPVSMYATFEDGLYVACVVAAIESSAKNG-QVVAVE 347 (367)
T ss_pred hhcCCCCccccccccccchhhhhhhhHHHHHHHHHhcccCCC-ceEEee
Confidence 66554432111 1 1122356889999999999999999 999875
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=228.88 Aligned_cols=220 Identities=17% Similarity=0.189 Sum_probs=172.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc--CCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP--LPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~--~~~ 83 (362)
+++||||||+ .+|..|++.+++.+ +++++||||++++++++++++||++ .|+|++|++++.++|+|+|+ +|+
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~----~y~~~eell~d~Di~~V~ipt~~P~ 76 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVP----LYCEVEELPDDIDIACVVVRSAIVG 76 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCC----ccCCHHHHhcCCCEEEEEeCCCCCC
Confidence 4799999999 56999999999988 8999999999999999999999984 79999999988777888874 478
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCC----CccceEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ----RFGQLRTMH 159 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g----~iG~i~~i~ 159 (362)
..|++++++||++||||+||||++ .+|+++|+++|+++|++++++ ||+|.+..+|++| +++ .+|++..++
T Consensus 77 ~~H~e~a~~aL~aGkHVL~EKPla--~~Ea~el~~~A~~~g~~l~v~---~f~p~~~~vr~~i-~~~~~i~~~~~~~~i~ 150 (343)
T TIGR01761 77 GQGSALARALLARGIHVLQEHPLH--PRDIQDLLRLAERQGRRYLVN---TFYPHLPAVRRFI-EYARQLHHRRGPRFVE 150 (343)
T ss_pred ccHHHHHHHHHhCCCeEEEcCCCC--HHHHHHHHHHHHHcCCEEEEE---ecCHHHHHHHHHH-HcchhHhhcCCCCcce
Confidence 899999999999999999999997 799999999999999999984 6999999999999 778 667766666
Q ss_pred EEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEE
Q 018020 160 SCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~ 239 (362)
..++. +.+++. +|++.+++|...|.++.+.+. .. ....+-.+.+.. +|...
T Consensus 151 ~~~~~--------------------~v~~dl----ldil~~~lgg~~~~~i~~~~~-~~---~~~~f~~~~~~i-~~~p~ 201 (343)
T TIGR01761 151 ATCGV--------------------QVLYST----LDILARALGGVGPWSLESPGG-DL---SPFPMRGLQGVI-AGVPL 201 (343)
T ss_pred eecCC--------------------ccccch----HHHHHHHhCCCCceEEEeecc-cc---CCCCceEEEEEE-CCceE
Confidence 54321 444554 888888888334777777741 11 111233344444 45666
Q ss_pred EEEEeeee-CC--------ceeEEEEeccceEEEcc
Q 018020 240 TFSCSFLA-NM--------TMDITATGTNGSLQLHD 266 (362)
Q Consensus 240 ~~~~~~~~-~~--------~~~~~v~G~~G~i~~~~ 266 (362)
++...-.. +. -.++++..+.|++.+.+
T Consensus 202 ~l~~~n~l~~~dpD~~~~~~hri~~g~~~G~L~L~~ 237 (343)
T TIGR01761 202 SLNLQNYLDPADPDGHSLIMHRLSLGTPEGHLSLVS 237 (343)
T ss_pred EEEEecccCCCCCcchhhhheeEEEeccCcEEEEec
Confidence 66654222 22 12688888888888875
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-29 Score=198.45 Aligned_cols=119 Identities=40% Similarity=0.628 Sum_probs=113.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||||||+|++|+.|++.+.+. +++++++++|+++++++.++++++++ .|+|++++++++++|+|+|+||+..|.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP----VYTDLEELLADEDVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE----EESSHHHHHHHTTESEEEEESSGGGHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc----chhHHHHHHHhhcCCEEEEecCCcchH
Confidence 6999999999999999888777 89999999999999999999999974 899999999988999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
++++.++++|+||+||||++.+++++++|.++++++|+.++|||
T Consensus 77 ~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~Vg~ 120 (120)
T PF01408_consen 77 EIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVMVGY 120 (120)
T ss_dssp HHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEEEE-
T ss_pred HHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEEEeC
Confidence 99999999999999999999999999999999999999999985
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=180.57 Aligned_cols=225 Identities=15% Similarity=0.153 Sum_probs=160.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||||||+|.||+.|++.+.+ .+++++++++|+++++++.++++++.+ ..++|+++++++ +|+|++++|+.
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~---~~~~~~eell~~--~D~Vvi~tp~~ 78 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRP---PPVVPLDQLATH--ADIVVEAAPAS 78 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCC---cccCCHHHHhcC--CCEEEECCCcH
Confidence 568999999999999999999987 589999999999999999999999854 578999999864 89999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE--eeecccChhHHHHHHhhcCCCCccceEEEEEEe
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD--GTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF 162 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v--~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~ 162 (362)
.|.+++..+|++||||+|++.. +++++++|.++++++|.++++ |+..++ +.| +.|.+|++..+....
T Consensus 79 ~h~e~~~~aL~aGk~Vi~~s~g--al~~~~~L~~~A~~~g~~l~v~sGa~~g~--------d~l-~~g~iG~~~~v~~~t 147 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIVLSVG--ALLRNEDLIDLARQNGGQIIVPTGALLGL--------DAV-TAAAEGTIHSVKMIT 147 (271)
T ss_pred HHHHHHHHHHHcCCcEEEecch--hHHhHHHHHHHHHHcCCEEEEcchHHHhH--------HHH-HHHHcCCceEEEEEE
Confidence 9999999999999999999643 556899999999999999998 444444 566 778999999887764
Q ss_pred eecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeecccc-CCCCeeEeeEEEEEeC----CCc
Q 018020 163 SFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVL-NEAGVILSCGASLHWD----DGR 237 (362)
Q Consensus 163 ~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~-~~~~~~d~~~~~~~~~----~G~ 237 (362)
.-+ +. .|+ |+.+.+...|++|.++ .|+.++-=..... ...+..-++.+.+-.. +..
T Consensus 148 rkp--p~----~~~-------g~~~~~~~~~dld~~~------~~~~~f~G~a~ea~~~fP~n~Nvaaa~ala~~g~d~t 208 (271)
T PRK13302 148 RKP--PD----GLK-------GAPFLVTNNIDIDGLT------EPLLLFEGSAREAAKGFPANLNVAVALSLAGIGPDRT 208 (271)
T ss_pred ecC--ch----Hhc-------cChhhhhcCCCccccc------cceEEEEecHHHHHHHCCcchhHHHHHHHhccCccce
Confidence 322 21 233 2454555667777432 2333322110000 0011111111111111 235
Q ss_pred EEEEEEeeeeCC-ceeEEEEeccceEEEc
Q 018020 238 VATFSCSFLANM-TMDITATGTNGSLQLH 265 (362)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~v~G~~G~i~~~ 265 (362)
.+.+...-.... ..++++.|+-|.+.++
T Consensus 209 ~v~l~adP~~~~n~H~i~~~g~~g~~~~~ 237 (271)
T PRK13302 209 TLEIWADPGVTRNVHRIEVDADSARFSMT 237 (271)
T ss_pred EEEEEECCCCCCceEEEEEEeceEEEEEE
Confidence 555555433333 4579999999999987
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-20 Score=169.91 Aligned_cols=226 Identities=12% Similarity=0.041 Sum_probs=158.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||||||+|.||+.+++.+.+.|++++++++++... .++..+.++ .++.+++|++++ +.++|+|++++|+..|.
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~--~~~~~~~d~~~l--~~~~DvVve~t~~~~~~ 75 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALG--EAVRVVSSVDAL--PQRPDLVVECAGHAALK 75 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhc--cCCeeeCCHHHh--ccCCCEEEECCCHHHHH
Confidence 3799999999999999999999999999999976432 222333332 124689999998 46899999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 88 KWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
+++.++|++||||+|+||.+.+ .+...+|.++|+++|+.+++ .+.+...+.++ +.+.+|.+..+.... ..
T Consensus 76 e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v------~sga~gg~d~l-~~~~~g~~~~v~~~~--~k 146 (265)
T PRK13303 76 EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL------LSGAIGGIDAL-AAAKEGGLDEVTYTG--RK 146 (265)
T ss_pred HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE------eChHhhCHHHH-HHHHhCCceEEEEEE--ec
Confidence 9999999999999999998765 66689999999999998876 45555667777 678889988888743 22
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCC----CcEEEEE
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDD----GRVATFS 242 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~----G~~~~~~ 242 (362)
++ .+|+..+.. ..+| +.++.+ +..-..+.........+...++.+.+.+.+ .+.+.+.
T Consensus 147 ~p----~~~~~~~~~-----------~~~d-l~~~~~--~~~~f~G~a~ea~~~~p~n~nvaaa~~la~~g~d~~~v~~~ 208 (265)
T PRK13303 147 PP----KSWRGTPAE-----------QLCD-LDALTE--PTVIFEGSAREAARLFPKNANVAATVALAGLGLDRTRVELI 208 (265)
T ss_pred Ch----hHhCcChhH-----------hccc-cccccc--CeEEEEeCHHHHHHHCCchhhHHHHHHHhccCccceEEEEE
Confidence 22 245544332 2466 666766 222222322111112344555555555542 2555565
Q ss_pred EeeeeC-CceeEEEEeccceEEEc
Q 018020 243 CSFLAN-MTMDITATGTNGSLQLH 265 (362)
Q Consensus 243 ~~~~~~-~~~~~~v~G~~G~i~~~ 265 (362)
..-... ...++++.|+-|.+.+.
T Consensus 209 adp~~~~n~h~i~~~g~~g~~~~~ 232 (265)
T PRK13303 209 ADPAVTRNVHEIEARGAFGEFEFE 232 (265)
T ss_pred ECCCCCCceEEEEEEeccEEEEEE
Confidence 543332 34579999999999987
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.3e-19 Score=158.28 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=124.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHHhcC---CCCcEEEEcC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~ 81 (362)
|+++||||||+|.+|..|+..+.+.++++++++||+++++ ..++++++|++ ..++++++++++ +++|+|+++|
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~---~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVA---TSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCC---cccCCHHHHHhCcCCCCCCEEEECC
Confidence 4689999999999999999988888999999999999874 44778899986 457999999987 7899999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMA--------LNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~--------~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
|+..|.+++.+++++|+||+++||.. .|.++. +...++.+..+.+.+..|.+..+++ + .++.+|
T Consensus 79 ~a~~H~e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~------~~~~~~~iia~p~~ati~~v~Al~~-v-~~~~~~ 150 (302)
T PRK08300 79 SAGAHVRHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH------LDAPNVNMVTCGGQATIPIVAAVSR-V-APVHYA 150 (302)
T ss_pred CHHHHHHHHHHHHHcCCeEEECCccccCCcccCcCCHHHH------hcccCCCEEECccHHHHHHHHHhcc-c-CcCcee
Confidence 99999999999999999999999999 888865 3445678888999999999999999 7 778999
Q ss_pred ceE
Q 018020 154 QLR 156 (362)
Q Consensus 154 ~i~ 156 (362)
+|.
T Consensus 151 eIv 153 (302)
T PRK08300 151 EIV 153 (302)
T ss_pred eee
Confidence 988
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=184.31 Aligned_cols=175 Identities=21% Similarity=0.244 Sum_probs=146.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcE------------EEEEEcCCHHHHHHHHHHc-CCCCCCcc-cCCHHHHhcC-
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAV------------LSAVASRSLEKATNFAKAN-NFPPDAKV-YGSYEALLDD- 71 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~------------vv~v~d~~~~~~~~~~~~~-~~~~~~~~-~~~~~e~l~~- 71 (362)
++-||+|||+|.+|..|+..|.+.++++ +++|+|++.++++++++.+ ++. .+.+ +.|.+++++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~-~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAE-AVQLDVSDSESLLKYV 646 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCc-eEEeecCCHHHHHHhh
Confidence 3569999999999999999998888876 7889999999999999887 532 1234 7888988863
Q ss_pred CCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHH--HHHhhcCC
Q 018020 72 KDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQ--MKEFVSDP 149 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~--~k~~i~~~ 149 (362)
.++|+|++++|+..|.++++.|+++|||+++|| .+.+++++|.+.|+++|+++++++. |+|.+.. ++++| ++
T Consensus 647 ~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek---y~~~e~~~L~e~Ak~AGV~~m~e~G--lDPGid~~lA~~~I-d~ 720 (1042)
T PLN02819 647 SQVDVVISLLPASCHAVVAKACIELKKHLVTAS---YVSEEMSALDSKAKEAGITILCEMG--LDPGIDHMMAMKMI-DD 720 (1042)
T ss_pred cCCCEEEECCCchhhHHHHHHHHHcCCCEEECc---CCHHHHHHHHHHHHHcCCEEEECCc--cCHHHHHHHHHHHH-Hh
Confidence 469999999999999999999999999999998 8899999999999999999999988 9999999 99999 77
Q ss_pred C--CccceEEEEEEeeecCCcccccCccCcCCCCCCCcccc
Q 018020 150 Q--RFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALG 188 (362)
Q Consensus 150 g--~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~ 188 (362)
+ ++|+|..++.++..-+.+++..+.|++...++.-|.|.
T Consensus 721 ~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~ 761 (1042)
T PLN02819 721 AHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIK 761 (1042)
T ss_pred hcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHH
Confidence 7 88999999999887665555555565554444434333
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=162.04 Aligned_cols=139 Identities=18% Similarity=0.231 Sum_probs=118.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHH-HHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKAT-NFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||||||+|.+|..|+..+.+.+++++++++|+++++.. ++++++|++ ..+++++++++++++|+|+++||+..|
T Consensus 1 klrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~---~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 1 KVKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVK---TSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCC---EEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 4799999999999999888877889999999999987644 678889986 568899999999899999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCC--------CCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMA--------LNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~--------~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
.+++.+++++||||+||||.+ .+.+++. +..++.+..+.+.+..|.+..++++. +.+ .++|+.
T Consensus 78 ~e~a~~al~aGk~VIdekPa~~~plvvp~VN~~~~~------~~~~~~iv~c~~~atip~~~al~r~~-d~~-~~~iv~ 148 (285)
T TIGR03215 78 ARHARLLAELGKIVIDLTPAAIGPYVVPAVNLDEHL------DAPNVNMVTCGGQATIPIVAAISRVA-PVH-YAEIVA 148 (285)
T ss_pred HHHHHHHHHcCCEEEECCccccCCccCCCcCHHHHh------cCcCCCEEEcCcHHHHHHHHHHHHhh-ccc-cEEEEE
Confidence 999999999999999999998 6755543 33467778888888999999999997 555 455443
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-19 Score=159.56 Aligned_cols=142 Identities=22% Similarity=0.255 Sum_probs=125.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||||||+|.||..++..+.+.+ ++++++++|+++++++.++++++. ..++|+++++ .++|+|++++|+..|.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~----~~~~~~~ell--~~~DvVvi~a~~~~~~ 75 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGA----KACLSIDELV--EDVDLVVECASVNAVE 75 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCC----eeECCHHHHh--cCCCEEEEcCChHHHH
Confidence 69999999999999999988764 799999999999999999998874 4789999999 3699999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 88 KWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
+++..++++||||+|++|.+. +.+.+++|.++|+++|+.+++. +.....++.| +.+.+|++..+.....
T Consensus 76 ~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~------sga~~g~d~i-~a~~~G~i~~V~~~~~ 145 (265)
T PRK13304 76 EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLP------SGAIVGLDGI-KAASLGEIKSVTLTTR 145 (265)
T ss_pred HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEe------CchHHhHHHH-HHHhcCCccEEEEEEe
Confidence 999999999999999999765 8889999999999999999872 3445557888 7889999998887654
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-19 Score=153.35 Aligned_cols=120 Identities=16% Similarity=0.199 Sum_probs=110.8
Q ss_pred CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCC-CH
Q 018020 32 NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMAL-NV 110 (362)
Q Consensus 32 ~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~-~~ 110 (362)
++++++|||+++++++.+++++|+ .+|+|++++++ .++|+|++|+|+..|.+++.++|++||||+|+||.+. +.
T Consensus 1 ~~eLvaV~D~~~e~a~~~a~~~g~----~~~~d~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~gAlad~ 75 (229)
T TIGR03855 1 NFEIAAVYDRNPKDAKELAERCGA----KIVSDFDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVGALADR 75 (229)
T ss_pred CeEEEEEECCCHHHHHHHHHHhCC----ceECCHHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCcccCCH
Confidence 478999999999999999999985 48999999998 4799999999999999999999999999999999988 78
Q ss_pred HHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 111 AEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 111 ~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
+++++|.++++++|++++++ +.+...++.| +.+.+|.+..+.....
T Consensus 76 e~~~~l~~aA~~~g~~l~i~------sGai~g~d~l-~a~~ig~~~~V~i~~~ 121 (229)
T TIGR03855 76 ELRERLREVARSSGRKVYIP------SGAIGGLDAL-KAASLGRIERVVLTTT 121 (229)
T ss_pred HHHHHHHHHHHhcCCEEEEC------hHHHHHHHHH-HhcccCCceEEEEEEe
Confidence 99999999999999999997 4788889999 8999999999887644
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-19 Score=169.66 Aligned_cols=145 Identities=21% Similarity=0.298 Sum_probs=123.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC---------CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP---------NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~---------~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
+++||||||+|.+|+.++..+.+++ ++++++|+|++.++.+.+ .. ++..+++|++++++++++|+|
T Consensus 2 ~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~----~~-~~~~~~~d~~~ll~d~~iDvV 76 (426)
T PRK06349 2 KPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGV----DL-PGILLTTDPEELVNDPDIDIV 76 (426)
T ss_pred CeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCC----CC-cccceeCCHHHHhhCCCCCEE
Confidence 4899999999999998887775542 689999999998765422 21 223688999999999999999
Q ss_pred EEcCCC-cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhHHHHHHhhcCCCCccce
Q 018020 78 YLPLPT-SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRTAQMKEFVSDPQRFGQL 155 (362)
Q Consensus 78 ~i~~~~-~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~~~~k~~i~~~g~iG~i 155 (362)
+.+|++ ..|.+++++||++||||+|++| +...+++++|.++|+++|+.++ .+...++.|.++.+++.+ ..+.||+|
T Consensus 77 ve~tg~~~~~~~~~~~aL~~GkhVVtaNK-~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiPii~~l~~~l-~~~~I~~I 154 (426)
T PRK06349 77 VELMGGIEPARELILKALEAGKHVVTANK-ALLAVHGAELFAAAEEKGVDLYFEAAVAGGIPIIKALREGL-AANRITRV 154 (426)
T ss_pred EECCCCchHHHHHHHHHHHCCCeEEEcCH-HHHHHHHHHHHHHHHHcCCcEEEEEEeeccCchHHHHHhhc-ccCCeeEE
Confidence 999876 5789999999999999999988 6788999999999999999765 578888999999999999 88888887
Q ss_pred EEE
Q 018020 156 RTM 158 (362)
Q Consensus 156 ~~i 158 (362)
..|
T Consensus 155 ~GI 157 (426)
T PRK06349 155 MGI 157 (426)
T ss_pred EEE
Confidence 754
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=159.17 Aligned_cols=148 Identities=18% Similarity=0.237 Sum_probs=122.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC---------CcEEEEEEcC----------CHHHHHHHHHHcCCCCC---CcccCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP---------NAVLSAVASR----------SLEKATNFAKANNFPPD---AKVYGSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~---------~~~vv~v~d~----------~~~~~~~~~~~~~~~~~---~~~~~~~ 65 (362)
++||+|+|+|.+|+.+++.+.+.+ +++|++++|+ +.+++..++++++.... ...+.|+
T Consensus 2 ~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (341)
T PRK06270 2 EMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISG 81 (341)
T ss_pred eEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCH
Confidence 699999999999999998887653 7999999995 45667777777663211 1123599
Q ss_pred HHHhcCCCCcEEEEcCCCccc-----HHHHHHHHHcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccCh
Q 018020 66 EALLDDKDIDAVYLPLPTSMH-----VKWAISVAQKKKHLLME--KPMALNVAEFDVILNACEENGVQLM-DGTMWVHNP 137 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~~~~~~h-----~~~~~~al~~gk~V~~E--KP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p 137 (362)
+++++++++|+|+++||+..| .+++..||++||||+|+ ||++.+. .+|.++|+++|+.++ .+...++.|
T Consensus 82 ~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~---~eL~~~A~~~g~~~~~ea~v~~glP 158 (341)
T PRK06270 82 LEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAY---KELKELAKKNGVRFRYEATVGGAMP 158 (341)
T ss_pred HHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhH---HHHHHHHHHcCCEEEEeeeeeechh
Confidence 999998899999999999887 78999999999999996 8988765 578999999999886 488899999
Q ss_pred hHHHHHHhhcCCCCccceEEEE
Q 018020 138 RTAQMKEFVSDPQRFGQLRTMH 159 (362)
Q Consensus 138 ~~~~~k~~i~~~g~iG~i~~i~ 159 (362)
.++.+|+++ ..+.||+|..|-
T Consensus 159 ii~~l~~~l-~g~~I~~I~GIl 179 (341)
T PRK06270 159 IINLAKETL-AGNDIKSIKGIL 179 (341)
T ss_pred HHHHHHhhc-ccCceEEEEEEE
Confidence 999999998 777787765543
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=153.72 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=124.7
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+|||+|||+ |.||+.++..+.+.+++++++++|+++++.... .++++ ..++|++++++ ++|+|+.+|||..|
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~~~~i----~~~~dl~~ll~--~~DvVid~t~p~~~ 73 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-GALGV----AITDDLEAVLA--DADVLIDFTTPEAT 73 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-CCCCc----cccCCHHHhcc--CCCEEEECCCHHHH
Confidence 479999998 999999999998888999999999988766554 44443 57899999997 59999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc--ceEEEEEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG--QLRTMHSC 161 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG--~i~~i~~~ 161 (362)
.+++..|+++|+||+++ |.+.+.+++++|.+++++.++.+..++..+.....+.+++.. +.+| +|..++.+
T Consensus 74 ~~~~~~al~~G~~vvig-ttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~~~aa---~~l~~~d~ei~E~H 146 (257)
T PRK00048 74 LENLEFALEHGKPLVIG-TTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLAEKAA---KYLGDYDIEIIEAH 146 (257)
T ss_pred HHHHHHHHHcCCCEEEE-CCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHHHHHH---HhcCCCCEEEEEcc
Confidence 99999999999999999 889999999999997777888888999999999999999887 5788 55555554
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=144.50 Aligned_cols=187 Identities=15% Similarity=0.121 Sum_probs=127.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+++||+|||+|.+|+.+++.+.+.|+++|++++|+++ +++. +..+. ....+.++++ .++|+|++|+|+..
T Consensus 2 ~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~~v----~~~~d~~e~l--~~iDVViIctPs~t 72 (324)
T TIGR01921 2 SKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TETPV----YAVADDEKHL--DDVDVLILCMGSAT 72 (324)
T ss_pred CCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcCCc----cccCCHHHhc--cCCCEEEEcCCCcc
Confidence 3799999999999999999999999999999999985 3322 32332 2345666666 46999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCH-HHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNV-AEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~-~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
|.+++..+|++|+||+++||...+. +..++|.++|+++|....++ ..++|.+..+++++ .+..+=+=. .|+.
T Consensus 73 h~~~~~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~--~GwDPG~~si~r~~-~ea~lp~g~----~yt~ 145 (324)
T TIGR01921 73 DIPEQAPYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIS--TGWDPGMFSINRVY-GEAVLPKGQ----TYTF 145 (324)
T ss_pred CHHHHHHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEE--CCCCcChHHHHHHH-HhccCCCCc----ceec
Confidence 9999999999999999999987764 55666777777666555544 68999999999998 544332211 1222
Q ss_pred cCCcccccCccCcCCCCCCC--cccccccchHHHHHHHHc-cCCCCcEEEEee
Q 018020 165 AGDAEFLKNDIRVKPDLDGL--GALGDAGWYGIRSILWAN-DYELPKTVIAMH 214 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~gg--g~l~~~g~h~id~~~~l~-g~~~~~~V~a~~ 214 (362)
+++.-....++-.+.. .|. +..+ -+..+|.+.+.+ | ++.++++..
T Consensus 146 wG~g~s~ghs~a~~~~-~Gv~~a~~~--tip~~dal~~v~~G--e~~~l~~~~ 193 (324)
T TIGR01921 146 WGPGLSQGHSDAVRRI-DGVKKAVQY--TLPSEDALEKARRG--EAPELTGKQ 193 (324)
T ss_pred cCCCcCchhhhhhccc-CCcccceEE--EEehHHHHHHHHcC--Ccccccccc
Confidence 1111000011111111 121 1233 334788999988 6 566777764
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=142.12 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=102.4
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcC-CHHH-HHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASR-SLEK-ATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~-~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||+|+| +|.||+.++..+.+.|++++++++|+ +++. .+..++..+.. .++.+++|++++ . .++|+|+.+|+|.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~-~~~DvVIdfT~p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-E-TDPDVLIDFTTPE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-c-CCCCEEEECCChH
Confidence 7999999 69999999999998999999999995 3332 12233332321 234678999999 3 4699999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV 134 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r 134 (362)
.|.+++..|+++|+||+|+|| +.+.+++++|.++|+++|++++++.|+-
T Consensus 80 ~~~~~~~~al~~g~~vVigtt-g~~~e~~~~l~~aA~~~g~~v~~a~NfS 128 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTT-GFSEEDKQELADLAEKAGIAAVIAPNFS 128 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHHhcCCccEEEECccc
Confidence 999999999999999999999 8899999999999999999888876654
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-15 Score=135.02 Aligned_cols=211 Identities=12% Similarity=0.132 Sum_probs=157.6
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCC-CcEEEEEE-cCCHHHHHHHHHHcCCCCCCcc------------------------
Q 018020 9 IRFGIIG-AADIARKLSRAITLAP-NAVLSAVA-SRSLEKATNFAKANNFPPDAKV------------------------ 61 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~-~~~vv~v~-d~~~~~~~~~~~~~~~~~~~~~------------------------ 61 (362)
.||+|+| +|++|..++..++++| .++|++++ +++.+++.+.+++|+.. ..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~--~v~i~~~~~~~~l~~~l~~~~~~v~~G 79 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPK--YVVVADEEAAKELKEALAAAGIEVLAG 79 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCC--EEEEcCHHHHHHHHHhhccCCceEEEC
Confidence 4799999 8999999999999887 59999998 99999999999998732 111
Q ss_pred cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE-eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM-EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 62 ~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~-EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
.+.+.++++.+++|+|+++++...|.+.+..|+++||+|.+ +|+.-+ ..+..+.++++++|..+..= .+...
T Consensus 80 ~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV--~aG~~i~~~a~~~g~~i~PV-----DSEh~ 152 (385)
T PRK05447 80 EEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLV--CAGELVMDAAKKSGAQILPV-----DSEHS 152 (385)
T ss_pred hhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHH--hhHHHHHHHHHHcCCeEEEE-----CHHHH
Confidence 12455667778899999999999999999999999999999 999644 88889999999998776532 88899
Q ss_pred HHHHhhcCCCCccceEEEEEEeeecCCcc--------------cccCccCcCCCCCC-CcccccccchHHHHHHHHccCC
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSFAGDAE--------------FLKNDIRVKPDLDG-LGALGDAGWYGIRSILWANDYE 205 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~~~~~~--------------~~~~~w~~~~~~~g-gg~l~~~g~h~id~~~~l~g~~ 205 (362)
.+++++ +.+...+|..+-..-+..+... -..++|..-+...- .--|.|-|.|.|+ ..||||.
T Consensus 153 ai~q~l-~~~~~~~i~~iilTASGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IE-A~~Lf~~- 229 (385)
T PRK05447 153 AIFQCL-PGEKQEGVEKIILTASGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIE-AHWLFGL- 229 (385)
T ss_pred HHHHHh-cCCCccccceEEEecCCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHh-HHHHcCC-
Confidence 999999 6663223444433322211110 01245655333322 1357888999999 9999995
Q ss_pred CCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 206 LPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 206 ~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
+++++.....+ ....+.+++|.||.+
T Consensus 230 ~~~~I~vvIHp-------qSivHsmVef~DGsv 255 (385)
T PRK05447 230 PYEQIEVVIHP-------QSIIHSMVEYVDGSV 255 (385)
T ss_pred ChhhEEEEECC-------cCceeEEEEEeCCcE
Confidence 47888888432 236788999999875
|
|
| >PF02894 GFO_IDH_MocA_C: Oxidoreductase family, C-terminal alpha/beta domain; InterPro: IPR004104 Enzymes containing this domain utilise NADP or NAD, and are known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-12 Score=98.44 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=79.4
Q ss_pred HHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeec--cccCC
Q 018020 143 KEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHG--PVLNE 220 (362)
Q Consensus 143 k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~--~~~~~ 220 (362)
|++| ++|.||+|..+++.+.......+....|+..+ ..+||.+.|+|+|.+|+++|++|. +++.+.+... .....
T Consensus 1 KelI-~~g~iG~v~~v~~~~~~~~~~~~~~~~~~~~~-~~~gG~l~d~g~H~id~~~~l~G~-~~~~~~~~~~~~~~~~~ 77 (115)
T PF02894_consen 1 KELI-EEGEIGKVRSVQGEFRFYRAPRPPRWRWRRDP-EAGGGALLDLGIHQIDLVRWLFGS-PPTVVAAAGGQRQLPEA 77 (115)
T ss_dssp HHHH-HTTTTSSEEEEEEEEEEEEBHTHHHHSGGGSH-HTTTSHHHHTHHHHHHHHHHHHTS-EEEEEEEEEESESSTTT
T ss_pred Chhh-cCCCCCCEEEEEEeeecccccCCccccccccc-cCCceEEEeehhHHHHHHHHHhCC-CcEEEEEEEeccccCCC
Confidence 7889 89999999999986665444333333344443 345699999999999999999994 4666666642 22334
Q ss_pred CCeeEee--EEEEEeCCCcEEEEEEeeeeCCceeEEE
Q 018020 221 AGVILSC--GASLHWDDGRVATFSCSFLANMTMDITA 255 (362)
Q Consensus 221 ~~~~d~~--~~~~~~~~G~~~~~~~~~~~~~~~~~~v 255 (362)
....+.. .+.+.+.+|.++++++++..+...++.+
T Consensus 78 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (115)
T PF02894_consen 78 QEDEDAADRFANFEFGSGAVATLTASFNNGYKIRYII 114 (115)
T ss_dssp TSSESEEEEEEEEEETTEEEEEEEEESSSSEEEEEEE
T ss_pred CCccccceEEEEEEeCCEEEEEEEEcccCCCCCEEEE
Confidence 4566666 7899999999999998887766555443
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, C-terminal domain is almost always associated with the oxidoreductase, N-terminal domain (see IPR000683 from INTERPRO).; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3IP3_E 3DTY_B 3Q2I_A 2P2S_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A 3NT2_A 3NT4_A .... |
| >PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=93.98 Aligned_cols=120 Identities=11% Similarity=0.073 Sum_probs=87.0
Q ss_pred ccChhHHHHHHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEe
Q 018020 134 VHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAM 213 (362)
Q Consensus 134 r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~ 213 (362)
||.+.+|++|++| ++..+ ++....++|......-.. ..|| +...+| |.+.+.++|.+|++|++.|.-+..+|.+.
T Consensus 1 RYl~~vq~~K~ii-~en~l-~vm~~~aRY~~ay~~~~K-~~WW-~ks~sg-GpiVEQaTHfcDL~RYfgGeVdldtV~a~ 75 (142)
T PF08635_consen 1 RYLKAVQKMKQII-KENNL-PVMATNARYNCAYEHIAK-PFWW-NKSKSG-GPIVEQATHFCDLSRYFGGEVDLDTVQAH 75 (142)
T ss_pred CchHHHHHHHHHH-HhcCC-ceEEEEeeeeeehhccCC-chhh-hhcccC-CCeeeehhhHHHHHHHhcCceeeeeEEEE
Confidence 8999999999999 55544 788888888765543222 2344 446666 99999999999999999996556678877
Q ss_pred e-----------------ccccCCCCeeEeeEEEEEeCCCcEEEEEEeeee---CCceeEEEEec
Q 018020 214 H-----------------GPVLNEAGVILSCGASLHWDDGRVATFSCSFLA---NMTMDITATGT 258 (362)
Q Consensus 214 ~-----------------~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~~---~~~~~~~v~G~ 258 (362)
. ...+.+..++...+++++|++|+++++...... .+..+++|+++
T Consensus 76 sve~~e~~g~LskipvdEs~Ip~e~RiPR~T~A~Wky~sGAVGsl~H~~~LqG~~y~telev~aD 140 (142)
T PF08635_consen 76 SVEWDEPPGKLSKIPVDESKIPPENRIPRATSATWKYKSGAVGSLTHALALQGTNYSTELEVYAD 140 (142)
T ss_pred eccccCCCCcCCCCCcCcccCChhhcCcceeeeEEEeccCceehhhhhhhccccccceEEEEecc
Confidence 5 112223356677889999999999999866443 33456666655
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.9e-12 Score=109.40 Aligned_cols=102 Identities=20% Similarity=0.222 Sum_probs=82.6
Q ss_pred ceeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.+.||+|||+|.+|..+++.+. ..+++++++++|+++++...... +++ +..++++.+++...++|.|+|++|+..
T Consensus 83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~--g~~--v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG--GIP--VYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC--CeE--EcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 4689999999999998877642 34579999999998766543221 221 234578889988788999999999999
Q ss_pred cHHHHHHHHHcC-CeEEEeCCCCCCHHH
Q 018020 86 HVKWAISVAQKK-KHLLMEKPMALNVAE 112 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~EKP~~~~~~~ 112 (362)
|.+++..++++| ++|+|+||+..++.+
T Consensus 159 ~~~i~~~l~~~Gi~~il~~~p~~~~v~~ 186 (213)
T PRK05472 159 AQEVADRLVEAGIKGILNFAPVRLSVPE 186 (213)
T ss_pred HHHHHHHHHHcCCCEEeecCceeecCCC
Confidence 999999999999 799999999998874
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-10 Score=107.77 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=82.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------------CCCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------------PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~e~l~~~~ 73 (362)
++||||+|+|.||+.+++.+..+|+++|++++|++++....+++++|.+ .+..++.++++++. +
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~--~ 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE--K 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc--c
Confidence 4899999999999999999999999999999999887777777755421 12345678888885 4
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCC
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPM 106 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~ 106 (362)
+|+|+.+||+..|.+.+..++++|++|+.--|.
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKAIFQGGE 111 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEEEEcCCC
Confidence 999999999999999999999999999987764
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.3e-10 Score=93.96 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=108.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|+|||||||.+|+.....+++-+ .++++++||++.++++.+.+.++.+ +.++++|++. ++|+++=|..+..-.
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~--~~DlvVEaAS~~Av~ 74 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIA--EVDLVVEAASPEAVR 74 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhh--ccceeeeeCCHHHHH
Confidence 57999999999999999998764 6999999999999999998888753 4599999994 699999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEE
Q 018020 88 KWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSC 161 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~ 161 (362)
+++.++|++|++|++=.=-+. +..-..++.++|+..+..+++-+-.-- ....+ .+-..|.|.++...
T Consensus 75 e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiG--GlD~l-----~aar~g~i~~V~lt 142 (255)
T COG1712 75 EYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIG--GLDAL-----AAARVGGIEEVVLT 142 (255)
T ss_pred HHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccch--hHHHH-----HHhhcCCeeEEEEE
Confidence 999999999999987543344 455566677888888888865322211 22233 23355777776654
|
|
| >COG4693 PchG Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.15 E-value=7.9e-10 Score=95.86 Aligned_cols=129 Identities=21% Similarity=0.326 Sum_probs=110.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC----
Q 018020 9 IRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT---- 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~---- 83 (362)
-+|.|.|+-+ |..++.++... |+++++|+-....+|.++++..+|+| .|.+.+|+-++ +|+.+|....
T Consensus 5 ksVvV~GtrF-Gq~Ylaaf~~~~~~~eLaGiLaqGSeRSRaLAh~~GVp----ly~~~eelpd~--idiACVvVrsai~G 77 (361)
T COG4693 5 KSVVVCGTRF-GQFYLAAFAAAPPRFELAGILAQGSERSRALAHRLGVP----LYCEVEELPDD--IDIACVVVRSAIVG 77 (361)
T ss_pred ceEEEecchH-HHHHHHHhccCCCCceeehhhhcccHHHHHHHHHhCCc----cccCHhhCCCC--CCeEEEEEeeeeec
Confidence 3899999876 88888888766 78999999999999999999999986 89999999987 7766665444
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
..-.++++..|++|.||+.|.|+ ...+..++.++|++.|+.+.||.-+-+.|..++..+..
T Consensus 78 g~Gs~larall~RGi~VlqEHPl--~p~di~~l~rlA~rqG~~y~vNTfYPhlpA~rrfi~~~ 138 (361)
T COG4693 78 GQGSALARALLARGIHVLQEHPL--HPRDIQDLLRLAERQGRRYLVNTFYPHLPAVRRFIEYA 138 (361)
T ss_pred CCcHHHHHHHHHcccHHHHhCCC--CHHHHHHHHHHHHHhCcEEEEeccCCCcHHHHHHHHHH
Confidence 35688999999999999999996 67899999999999999999998888888877655544
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=95.31 Aligned_cols=119 Identities=17% Similarity=0.132 Sum_probs=102.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||||||.||+..+..+.. .+++++++|+++++++.+.+++. +.+++|+++++.. ++|+|+=|-.+..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~------~~~~~~l~~ll~~-~~DlVVE~A~~~a 74 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR------VALLDGLPGLLAW-RPDLVVEAAGQQA 74 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc------CcccCCHHHHhhc-CCCEEEECCCHHH
Confidence 4899999999999999988865 34699999999999888888764 2589999999764 6999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
-.+++..+|++|+++++=.+-+. |.+-.++|.++|+++|.++++-.=.
T Consensus 75 v~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA 123 (267)
T PRK13301 75 IAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA 123 (267)
T ss_pred HHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence 99999999999999998776665 6778889999999999998875443
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-10 Score=90.00 Aligned_cols=117 Identities=18% Similarity=0.258 Sum_probs=87.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHH-H-HHHHHHHcCC-CCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLE-K-ATNFAKANNF-PPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~-~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||+|+|+ |.||+..+..+.+.++++|++++|++.+ . .+.+.+-.+. +.++.+++|++++++. +|+|+-+|.+.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEEEcCChH
Confidence 79999999 9999999999999999999999999862 1 1112222221 2345789999999997 99999999888
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.-.+.+..|+++|+++.+-.. +.+.++.++|.+++++ +.+...
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTT-G~~~~~~~~l~~~a~~--~~vl~a 121 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTT-GFSDEQIDELEELAKK--IPVLIA 121 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-S-SSHHHHHHHHHHHTTT--SEEEE-
T ss_pred HhHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHHhcc--CCEEEe
Confidence 889999999999999998543 4577888888888877 444433
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.8e-09 Score=99.13 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=109.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhc--------CC-CcEEEEEEcCC----------HHHHHHHHHHcCCCCCC----cc-cC
Q 018020 8 AIRFGIIGAADIARKLSRAITL--------AP-NAVLSAVASRS----------LEKATNFAKANNFPPDA----KV-YG 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~--------~~-~~~vv~v~d~~----------~~~~~~~~~~~~~~~~~----~~-~~ 63 (362)
++||+|+|+|..|...++.+.+ .. +++|++|+|++ .+++.+..++.+..... .. ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 5999999999999987777654 21 48999999854 33344444444321100 00 12
Q ss_pred CHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEE-EeC-CCCCCHHHHHHHHHHHHHcCCEEEEeeec-ccChhHH
Q 018020 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLL-MEK-PMALNVAEFDVILNACEENGVQLMDGTMW-VHNPRTA 140 (362)
Q Consensus 64 ~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~-~EK-P~~~~~~~~~~l~~~a~~~~~~~~v~~~~-r~~p~~~ 140 (362)
++++++++.++|+|+-++++..+.++..+++++|+||. ..| |++. ..++|.++++++|+.+....+. ---|.+.
T Consensus 82 ~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~---~~~el~~la~~~~~~~~~ea~v~~GiPii~ 158 (336)
T PRK08374 82 SPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAF---HYDELLDLANERNLPYLFEATVMAGTPIIG 158 (336)
T ss_pred CHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHh---CHHHHHHHHHHcCCeEEEeccccccCCchH
Confidence 78899987789999999999999999999999999988 777 7774 4447777888899888755433 3689999
Q ss_pred HHHHhhcCCCCccceEEEEEEeee
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.+++.+ . | -+|..++..++.
T Consensus 159 ~l~~~l-~-g--~~i~~i~GIlnG 178 (336)
T PRK08374 159 LLRENL-L-G--DTVKRIEAVVNA 178 (336)
T ss_pred HHHhhc-c-c--cceEEEEEEEec
Confidence 999887 3 2 367777776653
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-10 Score=103.84 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=91.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+++|||+|.+|..++..+....+++.+.++++++++++++++++ +++ +..++++++++.+ .|+|+.+||.
T Consensus 127 ~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~--aDiVi~aT~s 202 (325)
T PRK08618 127 AKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE--IYVVNSADEAIEE--ADIIVTVTNA 202 (325)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc--EEEeCCHHHHHhc--CCEEEEccCC
Confidence 4579999999999999988876668888999999999999988754 432 3568999999964 9999999997
Q ss_pred cccHHHHHHHHHcCCeE---------EEeCCCCCCHHHHHHHH-----HHHHHcCCEEEEeeecccChh
Q 018020 84 SMHVKWAISVAQKKKHL---------LMEKPMALNVAEFDVIL-----NACEENGVQLMDGTMWVHNPR 138 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V---------~~EKP~~~~~~~~~~l~-----~~a~~~~~~~~v~~~~r~~p~ 138 (362)
. |+.+. ..++.|+|| ..|+|. ..+..+..+. +.+++.|-.......-++.+.
T Consensus 203 ~-~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~-~~~~~a~~vvvD~~~~~~~e~G~~~~~~~~~~~~~~ 268 (325)
T PRK08618 203 K-TPVFS-EKLKKGVHINAVGSFMPDMQELPS-EAIARANKVVVESKEAALEETGDLIVPLKEGLISKD 268 (325)
T ss_pred C-CcchH-HhcCCCcEEEecCCCCcccccCCH-HHHhhCCEEEECCHHHHHHhcCCcccHHHcCCCChh
Confidence 6 88888 999999999 578875 2344443332 344556655443333344433
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=91.34 Aligned_cols=105 Identities=16% Similarity=0.246 Sum_probs=78.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcC-CHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP--NAVLSAVASR-SLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|+.+||+|||+|.||..++..+.+.+ ..+.+.++++ ++++++.+++++++ ..++++++++++ .|+|++++|
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~DiViiavp 75 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNV----STTTDWKQHVTS--VDTIVLAMP 75 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCc----EEeCChHHHHhc--CCEEEEecC
Confidence 45789999999999999999886653 3442335554 67889999888875 467899999874 999999999
Q ss_pred CcccHHHHHHHHH--cCCeEEEeCCCCCCHHHHHHHH
Q 018020 83 TSMHVKWAISVAQ--KKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 83 ~~~h~~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
+..|.+++..... .++ +++=-.-+.+.+..++..
T Consensus 76 ~~~~~~v~~~l~~~~~~~-~vis~~~gi~~~~l~~~~ 111 (245)
T PRK07634 76 PSAHEELLAELSPLLSNQ-LVVTVAAGIGPSYLEERL 111 (245)
T ss_pred HHHHHHHHHHHHhhccCC-EEEEECCCCCHHHHHHHc
Confidence 9999998876542 244 444335567777766654
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.1e-09 Score=96.68 Aligned_cols=150 Identities=14% Similarity=0.169 Sum_probs=110.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CC---CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FP---PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
++||.|||+|.+|+..+..+.+....+|. ++||+.+++++++...+ +. .++.-.+.+.++|++ .|+|+.+.|
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~-iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~--~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVT-IADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKD--FDLVINAAP 77 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhc--CCEEEEeCC
Confidence 36899999999999988887766557765 88999999998876642 21 122233466678886 599999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc-ceEEEEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG-QLRTMHSC 161 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG-~i~~i~~~ 161 (362)
+..+..+++.|+++|.|++- .+...+...++.+.|+++|+..+.+. -|.|.+..+-..- ....+. +|.++.+.
T Consensus 78 ~~~~~~i~ka~i~~gv~yvD---ts~~~~~~~~~~~~a~~Agit~v~~~--G~dPGi~nv~a~~-a~~~~~~~i~si~iy 151 (389)
T COG1748 78 PFVDLTILKACIKTGVDYVD---TSYYEEPPWKLDEEAKKAGITAVLGC--GFDPGITNVLAAY-AAKELFDEIESIDIY 151 (389)
T ss_pred chhhHHHHHHHHHhCCCEEE---cccCCchhhhhhHHHHHcCeEEEccc--CcCcchHHHHHHH-HHHHhhccccEEEEE
Confidence 99999999999999999874 44444445899999999998887653 4688776333221 112345 78888888
Q ss_pred eeecC
Q 018020 162 FSFAG 166 (362)
Q Consensus 162 ~~~~~ 166 (362)
....+
T Consensus 152 ~g~~g 156 (389)
T COG1748 152 VGGLG 156 (389)
T ss_pred EecCC
Confidence 77544
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=101.55 Aligned_cols=93 Identities=22% Similarity=0.281 Sum_probs=72.3
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCC-CcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPD-AKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++||+|||+ |.+|+.+++.+.++|++++++++++. ++.+.+++.++ +... ...++++++. ...++|+|++|+|+.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~-~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE-ILAGADVVFLALPHG 79 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH-HhcCCCEEEECCCcH
Confidence 489999997 99999999999999999999999853 34444544443 2100 1246666665 335799999999999
Q ss_pred ccHHHHHHHHHcCCeEEE
Q 018020 85 MHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~ 102 (362)
.|.+++.+++++|+||+-
T Consensus 80 ~~~~~v~~a~~aG~~VID 97 (343)
T PRK00436 80 VSMDLAPQLLEAGVKVID 97 (343)
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 999999999999999884
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.3e-09 Score=85.85 Aligned_cols=115 Identities=21% Similarity=0.304 Sum_probs=86.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
++|||+||+|.||...+..|.+. +++|. ++|+++++++++.++ | ....+|+.|+++. .|+|++++|+....
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~-g~~v~-~~d~~~~~~~~~~~~-g----~~~~~s~~e~~~~--~dvvi~~v~~~~~v 71 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA-GYEVT-VYDRSPEKAEALAEA-G----AEVADSPAEAAEQ--ADVVILCVPDDDAV 71 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT-TTEEE-EEESSHHHHHHHHHT-T----EEEESSHHHHHHH--BSEEEE-SSSHHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc-CCeEE-eeccchhhhhhhHHh-h----hhhhhhhhhHhhc--ccceEeecccchhh
Confidence 36899999999999999999877 78865 799999999999876 3 3689999999986 79999999998776
Q ss_pred HHHHHH---HHc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 88 KWAISV---AQK--KKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 88 ~~~~~a---l~~--gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
+-+... +.. ...++++-- +.+++..+++.+.++++|+.+..+-.
T Consensus 72 ~~v~~~~~i~~~l~~g~iiid~s-T~~p~~~~~~~~~~~~~g~~~vdapV 120 (163)
T PF03446_consen 72 EAVLFGENILAGLRPGKIIIDMS-TISPETSRELAERLAAKGVRYVDAPV 120 (163)
T ss_dssp HHHHHCTTHGGGS-TTEEEEE-S-S--HHHHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhhhhHHhhccccceEEEecC-Ccchhhhhhhhhhhhhccceeeeeee
Confidence 555443 321 235666643 66899999999999999977665443
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.9e-09 Score=83.74 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=84.3
Q ss_pred eccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHH-HHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHH
Q 018020 15 GAADIARKLSRAITLAP---NAVLSAVASRSLEKAT-NFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWA 90 (362)
Q Consensus 15 G~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~ 90 (362)
|+|.+|+..+..+.+.. ++++++|++++ .... ......+ +...+++++++++..++|+|+=++++..-.+++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~ 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP---DEAFTTDLEELIDDPDIDVVVECTSSEAVAEYY 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT---HSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc---cccccCCHHHHhcCcCCCEEEECCCchHHHHHH
Confidence 89999999999998775 89999999998 1100 0111111 125789999999977799999999999999999
Q ss_pred HHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 91 ISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 91 ~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
..+|++|+||++= | |++ +....++|.++|+++|+.++.
T Consensus 77 ~~~L~~G~~VVt~nk~ala-~~~~~~~L~~~A~~~g~~~~~ 116 (117)
T PF03447_consen 77 EKALERGKHVVTANKGALA-DEALYEELREAARKNGVRIYY 116 (117)
T ss_dssp HHHHHTTCEEEES-HHHHH-SHHHHHHHHHHHHHHT-EEEE
T ss_pred HHHHHCCCeEEEECHHHhh-hHHHHHHHHHHHHHcCCEEEe
Confidence 9999999998853 2 666 889999999999999998863
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.8e-09 Score=78.23 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=70.7
Q ss_pred EEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-CHHHHhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYG-SYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
||+|||+|.||...+..+.+.. ..++..+++++++++++++++++. .++. +..++++. .|+|++++|+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~~--advvilav~p~~~ 74 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGV----QATADDNEEAAQE--ADVVILAVKPQQL 74 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTT----EEESEEHHHHHHH--TSEEEE-S-GGGH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcc----ccccCChHHhhcc--CCEEEEEECHHHH
Confidence 7999999999999999987773 377776779999999999999984 3555 89999994 9999999999999
Q ss_pred HHHHHHH--HHcCCeEE
Q 018020 87 VKWAISV--AQKKKHLL 101 (362)
Q Consensus 87 ~~~~~~a--l~~gk~V~ 101 (362)
.+++... +..++.|+
T Consensus 75 ~~v~~~i~~~~~~~~vi 91 (96)
T PF03807_consen 75 PEVLSEIPHLLKGKLVI 91 (96)
T ss_dssp HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhhccCCCEEE
Confidence 8888776 56676665
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.1e-08 Score=91.75 Aligned_cols=124 Identities=22% Similarity=0.311 Sum_probs=97.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-------------------CCcccCCHH
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-------------------DAKVYGSYE 66 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 66 (362)
.+++|||+||+|.||...+.....+|+++++++.|++.+.+++..++-+.++ .+.+.+|.+
T Consensus 15 G~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~ 94 (438)
T COG4091 15 GKPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAE 94 (438)
T ss_pred CCceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchh
Confidence 4689999999999999998888899999999999999988887776655542 134668899
Q ss_pred HHhcCCCCcEEEEcCCCc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 67 ALLDDKDIDAVYLPLPTS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
++++...+|+|+-+|-.+ .-+++...|+.+|||+.+=- +-.++--.-=|.+.|.+.|+.+..+
T Consensus 95 ~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmN-VEaDvtIGp~Lk~~Ad~~GviyS~~ 158 (438)
T COG4091 95 LIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMN-VEADVTIGPILKQQADAAGVIYSGG 158 (438)
T ss_pred hhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEE-eeeceeecHHHHHHHhhcCeEEecc
Confidence 999999999999988754 67899999999999977310 1123333344667888888887655
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.5e-08 Score=88.58 Aligned_cols=148 Identities=16% Similarity=0.223 Sum_probs=107.1
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC---------CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH-----HHHhcC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA---------PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY-----EALLDD 71 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~---------~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~e~l~~ 71 (362)
|+++||+|+|+|..|...++.+++. -++++++|.+++..... .++.++-..+.++. .+++.+
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR----DLDLLNAEVWTTDGALSLGDEVLLD 76 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc----cccccchhhheecccccccHhhhcc
Confidence 3589999999999999888877653 25899999998765443 22222102345566 788888
Q ss_pred CCCcEEEEcCCC-----cccHHHHHHHHHcCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhHHHHHH
Q 018020 72 KDIDAVYLPLPT-----SMHVKWAISVAQKKKHLLME-KPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRTAQMKE 144 (362)
Q Consensus 72 ~~~D~V~i~~~~-----~~h~~~~~~al~~gk~V~~E-KP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~~~~k~ 144 (362)
+++|+|+=+++. .. .+++.+||++||||..- |++ -.....+|.+.|+++|+.++ .+.-----|.+..+++
T Consensus 77 ~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~--lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~ 153 (333)
T COG0460 77 EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKAL--LALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRE 153 (333)
T ss_pred ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchH--hHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHHHHh
Confidence 899988866655 33 58999999999999854 322 12238899999999998775 4445557899999999
Q ss_pred hhcCCCCccceEEEEEEeee
Q 018020 145 FVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 145 ~i~~~g~iG~i~~i~~~~~~ 164 (362)
.+ . | -+|..+...++.
T Consensus 154 ~l-~-g--~~I~~i~GIlNG 169 (333)
T COG0460 154 LL-A-G--DEILSIRGILNG 169 (333)
T ss_pred hc-c-c--CceEEEEEEEec
Confidence 98 4 2 367777777653
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.3e-08 Score=90.02 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=78.2
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--------------CCcccCCHHHHhcCCCCcE
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--------------DAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~e~l~~~~~D~ 76 (362)
|||+|+|.||+.+++.+...++++|++|+|.+++++..++.+++... +..++.++++++. ++|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~--~vDi 78 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLE--KVDI 78 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhh--cCCE
Confidence 68999999999999998878999999999999998888888765321 1233567999985 5999
Q ss_pred EEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 77 VYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
|+.+||...|..-...-++.| |.|+.--|
T Consensus 79 Vve~Tp~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 79 VVDATPGGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred EEECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence 999999999999999999999 67777555
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-07 Score=85.80 Aligned_cols=134 Identities=16% Similarity=0.249 Sum_probs=93.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|||+|.||..++..+.+.. ..+.+.++++++++++.++++++ +...+++.+++++. .|+|++++|+..-.
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~---~~~~~~~~~~~~~~--aDvVilav~p~~~~ 75 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP---KVRIAKDNQAVVDR--SDVVFLAVRPQIAE 75 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC---CceEeCCHHHHHHh--CCEEEEEeCHHHHH
Confidence 47999999999999999987653 23446789999999999988873 12567899999874 89999999975444
Q ss_pred HHHHHH-HHcCCeEEEeCCCCCCHHHHHHHHHH-------------HHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 88 KWAISV-AQKKKHLLMEKPMALNVAEFDVILNA-------------CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 88 ~~~~~a-l~~gk~V~~EKP~~~~~~~~~~l~~~-------------a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
+++... ++.|++|+... .+.+.++.+++... +...+... +.+....+++++ ..+|
T Consensus 76 ~vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~-------~~~~~~~~~~l~---~~lG 144 (258)
T PRK06476 76 EVLRALRFRPGQTVISVI-AATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTA-------IYPPDPFVAALF---DALG 144 (258)
T ss_pred HHHHHhccCCCCEEEEEC-CCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeE-------ecCCHHHHHHHH---HhcC
Confidence 444332 24677888765 47788888877643 22223222 234456777777 3677
Q ss_pred ceEEE
Q 018020 154 QLRTM 158 (362)
Q Consensus 154 ~i~~i 158 (362)
....+
T Consensus 145 ~~~~~ 149 (258)
T PRK06476 145 TAVEC 149 (258)
T ss_pred CcEEE
Confidence 75543
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.5e-08 Score=80.92 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=87.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc-
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH- 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h- 86 (362)
..+|+|||+|.+|..++..+.+.. ...+.++|++++++++++++++...-...+.+.+++++ ++|+|++++|+..|
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLA--EADLIINTTPVGMKP 95 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccc--cCCEEEeCcCCCCCC
Confidence 578999999999999999998764 45566899999999998888763100023567777755 59999999999987
Q ss_pred ---HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhH
Q 018020 87 ---VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRT 139 (362)
Q Consensus 87 ---~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~ 139 (362)
.......++.|+-|+ + ++...... ++.+.+++.|..+..|...--+...
T Consensus 96 ~~~~~~~~~~~~~~~~v~-D--~~~~~~~~-~l~~~~~~~g~~~v~g~~~~~~q~~ 147 (155)
T cd01065 96 GDELPLPPSLLKPGGVVY-D--VVYNPLET-PLLKEARALGAKTIDGLEMLVYQAA 147 (155)
T ss_pred CCCCCCCHHHcCCCCEEE-E--cCcCCCCC-HHHHHHHHCCCceeCCHHHHHHHHH
Confidence 223345566666444 3 23332222 8888999999988877555443333
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-07 Score=82.58 Aligned_cols=150 Identities=14% Similarity=0.123 Sum_probs=106.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHH--HHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKA--TNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~--~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+|||+|+|+ |.||+...+.+...|++++++.+++..... ....+-.++. -++.+.+++.... .++|+++-.|.|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~--~~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVK--ADADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcc--cCCCEEEECCCc
Confidence 689999998 899999999999999999999999875422 1111111111 1234566644443 469999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc--ceEEEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG--QLRTMHSC 161 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG--~i~~i~~~ 161 (362)
..-.+.+..|+++|++..+-.- +.+.++.++|.+++++.++.+..|+..--+=.++.+++.- ..++ +|..++.+
T Consensus 80 ~~~~~~l~~~~~~~~~lVIGTT-Gf~~e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aa---k~l~~~DiEIiE~H 155 (266)
T COG0289 80 EATLENLEFALEHGKPLVIGTT-GFTEEQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAA---KVLDDYDIEIIEAH 155 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEECC-CCCHHHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHH---HhcCCCCEEehhhh
Confidence 9999999999999988776543 6789999999999999776666665554443444444433 3556 77777765
Q ss_pred ee
Q 018020 162 FS 163 (362)
Q Consensus 162 ~~ 163 (362)
..
T Consensus 156 Hr 157 (266)
T COG0289 156 HR 157 (266)
T ss_pred cc
Confidence 43
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-07 Score=88.22 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=100.0
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---CC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---FP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+|+|+|.+|+..+..|.+.+.+.-+.++|++.+++++++++.+ +. -++.-.++++++++. .|+|+.++|+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~--~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRG--CDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTT--SSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhc--CCEEEECCccc
Confidence 78999999999999999988777345599999999999887531 11 011112234556665 79999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH--HHHHhhcC-CCCccceEEEEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA--QMKEFVSD-PQRFGQLRTMHSC 161 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~--~~k~~i~~-~g~iG~i~~i~~~ 161 (362)
.+..++..|+++|.|.+- .+.-.+...++.+.++++|+.+..++=+ .|... .++.++++ .+.++++..+.++
T Consensus 79 ~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l~~~G~--~PGl~~~~a~~~~~~~~~~~~~v~~~~~~ 153 (386)
T PF03435_consen 79 FGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTALPGCGF--DPGLSNLLARYAADELDAEGDEVESVDIY 153 (386)
T ss_dssp GHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE-S-BT--TTBHHHHHHHHHHHHHHHTTHEEEEEEEE
T ss_pred hhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEEeCccc--ccchHHHHHHHHHHHhhhhcccceEEEEE
Confidence 999999999999999665 2223788899999999999999877544 55543 33333311 1345688888866
Q ss_pred eeec
Q 018020 162 FSFA 165 (362)
Q Consensus 162 ~~~~ 165 (362)
+...
T Consensus 154 ~g~~ 157 (386)
T PF03435_consen 154 VGGL 157 (386)
T ss_dssp EEEE
T ss_pred Eccc
Confidence 6544
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.70 E-value=5e-08 Score=77.29 Aligned_cols=90 Identities=20% Similarity=0.329 Sum_probs=65.4
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHH-HHhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYE-ALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~~h 86 (362)
||+|||+ |.+|..+++.+.++|+++++++++++.++.+.++..++ +. . ..+.+++ +.++..+.|+|++++|+..|
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK-G-EVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc-c-ccccccccCChhhcCCCEEEEcCCcHHH
Confidence 6899995 78899999999999999999999877666666666553 21 1 1123333 33344579999999999999
Q ss_pred HHHH---HHHHHcCCeEE
Q 018020 87 VKWA---ISVAQKKKHLL 101 (362)
Q Consensus 87 ~~~~---~~al~~gk~V~ 101 (362)
.+.+ ..+++.|+.|+
T Consensus 79 ~~~~~~~~~~~~~g~~vi 96 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVI 96 (122)
T ss_pred HHHHHHHHhhhcCCCEEE
Confidence 9964 44557787665
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.3e-08 Score=90.17 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=71.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCC--CcccC--CHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPD--AKVYG--SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~--~~~~~--~~~e~l~~~~~D~V~i~~~~ 83 (362)
+||+|||+ |.+|..+++.|.++|.+++++++++.....+.+.+.++--++ ...++ +.+++++ ++|+|++|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAE--DADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhc--CCCEEEECCCc
Confidence 58999998 999999999999999999999877665555555555531001 01233 5566654 59999999999
Q ss_pred cccHHHHHHHHHcCCeEEE
Q 018020 84 SMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~ 102 (362)
..|.+++.+++++|++|+-
T Consensus 79 ~~s~~~~~~~~~~G~~VID 97 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVID 97 (346)
T ss_pred hHHHHHHHHHHhCCCEEEe
Confidence 9999999999999998873
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-07 Score=83.06 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=84.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCC-CCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDK-DIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~D~V~i~~~~~~h~ 87 (362)
|||++||+|.||..++..+.+. +++|+ ++|+++++++.+++ .|. ..+.+.+++++.. +.|+|++++|+..+.
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~-g~~v~-v~dr~~~~~~~~~~-~g~----~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED-GHEVV-GYDVNQEAVDVAGK-LGI----TARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHH-CCC----eecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 3799999999999999999876 67776 79999998888754 453 5788999998753 479999999999665
Q ss_pred HHHHHHHHcC---CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAISVAQKK---KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~~al~~g---k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+-+..-+... .+++++-- +.++...+++.+.+++.|+.+.
T Consensus 74 ~~v~~~i~~~l~~g~ivid~s-t~~~~~~~~~~~~~~~~g~~~v 116 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGG-NSRYKDDLRRAEELAERGIHYV 116 (299)
T ss_pred HHHHHHHhccCCCCCEEEECC-CCCchhHHHHHHHHHHcCCeEE
Confidence 5443333221 25777632 5578899999999888887654
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-07 Score=82.36 Aligned_cols=111 Identities=17% Similarity=0.258 Sum_probs=90.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
+||++||+|.||...+..|.+. ++++. ++|++++++.....+.|. ..+.+..|..+. .|+|+.+.|+..+.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a-G~~v~-v~~r~~~ka~~~~~~~Ga----~~a~s~~eaa~~--aDvVitmv~~~~~V~ 72 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA-GHEVT-VYNRTPEKAAELLAAAGA----TVAASPAEAAAE--ADVVITMLPDDAAVR 72 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC-CCEEE-EEeCChhhhhHHHHHcCC----cccCCHHHHHHh--CCEEEEecCCHHHHH
Confidence 4799999999999999999887 67755 899999997777777774 578899999886 999999999999988
Q ss_pred HHHH----HHH---cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 89 WAIS----VAQ---KKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 89 ~~~~----al~---~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+.. .++ .| .++++-- +.+++.++++.+.+++.|+.++.
T Consensus 73 ~V~~g~~g~~~~~~~G-~i~IDmS-Tisp~~a~~~a~~~~~~G~~~lD 118 (286)
T COG2084 73 AVLFGENGLLEGLKPG-AIVIDMS-TISPETARELAAALAAKGLEFLD 118 (286)
T ss_pred HHHhCccchhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHhcCCcEEe
Confidence 8874 232 34 3555533 66999999999999999866554
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.4e-07 Score=81.92 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=101.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-------CCcEEEEEEcCCHH----------HHHHHHHHcCCCCCCcccC--CHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLA-------PNAVLSAVASRSLE----------KATNFAKANNFPPDAKVYG--SYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-------~~~~vv~v~d~~~~----------~~~~~~~~~~~~~~~~~~~--~~~e~l 69 (362)
|||+|||+|.+|+..++.+.+. .+++|++|+|++.. ...+..++ +.-. ....+ ++++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~-~~~~~~~~~~~ll 78 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLE-EIDYEKIKFDEIF 78 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-Cccc-cCCCCcCCHHHHh
Confidence 5899999999999998888653 46899999997532 11111222 2000 01123 788888
Q ss_pred cCCCCcEEEEcCCCcc----cHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEee-ecccChhHHHH
Q 018020 70 DDKDIDAVYLPLPTSM----HVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDGT-MWVHNPRTAQM 142 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~----h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~~-~~r~~p~~~~~ 142 (362)
+ .++|+|+=+||... ...+..++|++|+||.+- | |++ ....+|.++|+++|+.+...- -----|.+..+
T Consensus 79 ~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA---~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~~~ 154 (326)
T PRK06392 79 E-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLA---NHWHDIMDSASKNRRIIRYEATVAGGVPLFSLR 154 (326)
T ss_pred c-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHH---hhHHHHHHHHHHcCCeEEEeeeeeeccchhhhh
Confidence 7 58999999998532 467779999999999854 3 443 456889999999999886443 33467888888
Q ss_pred HHhhcCCCCccceEEEEEEeee
Q 018020 143 KEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 143 k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
+..+ . | -+|..++..++.
T Consensus 155 ~~~~-~-g--~~i~~i~GilnG 172 (326)
T PRK06392 155 DYST-L-P--SRIKNFRGIVSS 172 (326)
T ss_pred hhhc-c-c--CCEEEEEEEEeC
Confidence 6554 2 3 367888876653
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.6e-08 Score=89.09 Aligned_cols=103 Identities=18% Similarity=0.140 Sum_probs=79.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..-+++|||+|.+|..|+..+...++++.+.++|+++++++++++++.- +..+..++|++++++ +|+|+++||+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~---aDiVv~aTps~ 204 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD---CDILVTTTPSR 204 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh---CCEEEEecCCC
Confidence 3568999999999999999998888999999999999999998887631 112356889999985 89999999985
Q ss_pred ccHHHH-HHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 85 MHVKWA-ISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 85 ~h~~~~-~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
. +++ .+.++.|.||.+ ++.+....+|+-
T Consensus 205 ~--P~~~~~~l~~g~hV~~---iGs~~p~~~El~ 233 (326)
T PRK06046 205 K--PVVKAEWIKEGTHINA---IGADAPGKQELD 233 (326)
T ss_pred C--cEecHHHcCCCCEEEe---cCCCCCccccCC
Confidence 4 333 345799999884 444433344443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=80.92 Aligned_cols=112 Identities=14% Similarity=0.177 Sum_probs=84.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCC-CCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDK-DIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~D~V~i~~~~~~h~ 87 (362)
||||+||+|.||..++..|.+. +.+|+ ++|+++++.+.+.+ .|. ..+++++++++.. ++|+|++++|+..+.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~-g~~v~-v~dr~~~~~~~~~~-~g~----~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG-GHEVV-GYDRNPEAVEALAE-EGA----TGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHH-CCC----eecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4799999999999999999876 67765 79999999888854 453 5788999998753 479999999998543
Q ss_pred H-HHHHH---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 88 K-WAISV---AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 88 ~-~~~~a---l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+ ++... ++.| +++++- -+.+.+..+++.+.+++.|+.+..
T Consensus 74 ~~v~~~l~~~l~~g-~ivid~-st~~~~~~~~~~~~~~~~g~~~~d 117 (301)
T PRK09599 74 DATIDELAPLLSPG-DIVIDG-GNSYYKDDIRRAELLAEKGIHFVD 117 (301)
T ss_pred HHHHHHHHhhCCCC-CEEEeC-CCCChhHHHHHHHHHHHcCCEEEe
Confidence 3 33332 2333 566663 256788899999999999987654
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-06 Score=79.40 Aligned_cols=103 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.|||++||+|.||...+..+.+.+ ..++ .+++|+. ++++.+++++|+ ....+..++++. .|+|++++|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~r~~~~~~~~l~~~~g~----~~~~~~~e~~~~--aDvVilav~p 75 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSNRSNETRLQELHQKYGV----KGTHNKKELLTD--ANILFLAMKP 75 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceE-EEECCCCHHHHHHHHHhcCc----eEeCCHHHHHhc--CCEEEEEeCH
Confidence 579999999999999999887653 2444 4788865 567888887775 467888888764 8999999999
Q ss_pred cccHHHHHHHHHc--CCeEEEeCCCCCCHHHHHHHH
Q 018020 84 SMHVKWAISVAQK--KKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 84 ~~h~~~~~~al~~--gk~V~~EKP~~~~~~~~~~l~ 117 (362)
....+.+...... ..++++.=--+.+.+..+++.
T Consensus 76 ~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~ 111 (279)
T PRK07679 76 KDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL 111 (279)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc
Confidence 8877777654432 234565533456777777755
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.5e-07 Score=79.33 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=93.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.+.|||+||+|.||...+..|.+. ++.|+ |+||+.++.+.|.+.- ..++++..|+.++ .|+|+.+.|++.|
T Consensus 34 s~~~iGFIGLG~MG~~M~~nLik~-G~kVt-V~dr~~~k~~~f~~~G-----a~v~~sPaeVae~--sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 34 SKTRIGFIGLGNMGSAMVSNLIKA-GYKVT-VYDRTKDKCKEFQEAG-----ARVANSPAEVAED--SDVVITMVPNPKD 104 (327)
T ss_pred ccceeeEEeeccchHHHHHHHHHc-CCEEE-EEeCcHHHHHHHHHhc-----hhhhCCHHHHHhh--cCEEEEEcCChHh
Confidence 468999999999999999999988 78866 9999999999998754 4789999999997 9999999999988
Q ss_pred HHHHHH-------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 87 VKWAIS-------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 87 ~~~~~~-------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
..-+.. .++.|+...++-- +.+++-+++|.+.++..|..+..+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmS-Tidp~~s~ei~~~i~~~~~~~vDA 154 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMS-TIDPDTSLEIAKAISNKGGRFVDA 154 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEecc-ccCHHHHHHHHHHHHhCCCeEEec
Confidence 776653 3445555545533 668899999999998887766543
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-08 Score=76.01 Aligned_cols=110 Identities=26% Similarity=0.310 Sum_probs=71.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.++||+|||+|..|..+...|.+. +++|+++++++.+.+++.+...+- ..+.+++|++.+ .|+++|++|.+.-
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~srs~~sa~~a~~~~~~----~~~~~~~~~~~~--aDlv~iavpDdaI 81 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARA-GHEVVGVYSRSPASAERAAAFIGA----GAILDLEEILRD--ADLVFIAVPDDAI 81 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHT-TSEEEEESSCHH-HHHHHHC--TT---------TTGGGCC---SEEEE-S-CCHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCccccccccccccc----cccccccccccc--CCEEEEEechHHH
Confidence 479999999999999999999877 789999999999888888776652 346678888875 9999999999988
Q ss_pred HHHHHHHHHc-----CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAISVAQK-----KKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~~al~~-----gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+++...... |+ +++=- |-...-++++-+++.|...+
T Consensus 82 ~~va~~La~~~~~~~g~-iVvHt----SGa~~~~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQ-IVVHT----SGALGSDVLAPARERGAIVA 123 (127)
T ss_dssp HHHHHHHHCC--S-TT--EEEES-----SS--GGGGHHHHHTT-EEE
T ss_pred HHHHHHHHHhccCCCCc-EEEEC----CCCChHHhhhhHHHCCCeEE
Confidence 8888877665 43 33322 23333445666777776554
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.9e-08 Score=76.35 Aligned_cols=89 Identities=26% Similarity=0.383 Sum_probs=67.9
Q ss_pred EEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccC-CHHHHhcCCCCcEEEEcCCCc
Q 018020 10 RFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYG-SYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 10 ~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~-~~~e~l~~~~~D~V~i~~~~~ 84 (362)
||+||| +|.+|...++.|.++|.++++.+++++.+..+.+...+..+ .+..+-+ +.+++ .++|+|+.|+|+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~Dvvf~a~~~~ 77 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL---SDVDVVFLALPHG 77 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH---TTESEEEE-SCHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh---hcCCEEEecCchh
Confidence 799999 89999999999999999999999998874555555554311 1112222 23333 3699999999999
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
.+.+++.+++++|..|+
T Consensus 78 ~~~~~~~~~~~~g~~Vi 94 (121)
T PF01118_consen 78 ASKELAPKLLKAGIKVI 94 (121)
T ss_dssp HHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhhCCcEEE
Confidence 99999999999999665
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-06 Score=75.73 Aligned_cols=104 Identities=15% Similarity=0.240 Sum_probs=81.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||++||+|.||...+..+.+.+ ..+-+.+++|+++++++++++||+. ..++.+++.+. .|+|++++.|..
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~----~~~~~~~~~~~--advv~LavKPq~ 74 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVV----TTTDNQEAVEE--ADVVFLAVKPQD 74 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCc----ccCcHHHHHhh--CCEEEEEeChHh
Confidence 368999999999999999988775 2345669999999999999999974 37777788775 999999999977
Q ss_pred cHHHHHHHH--HcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 86 HVKWAISVA--QKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 86 h~~~~~~al--~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
..+++...- ..++.|+.= -.+.+.+..++++.
T Consensus 75 ~~~vl~~l~~~~~~~lvISi-aAGv~~~~l~~~l~ 108 (266)
T COG0345 75 LEEVLSKLKPLTKDKLVISI-AAGVSIETLERLLG 108 (266)
T ss_pred HHHHHHHhhcccCCCEEEEE-eCCCCHHHHHHHcC
Confidence 777776664 367777653 23668888888775
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.4e-06 Score=77.28 Aligned_cols=100 Identities=15% Similarity=0.196 Sum_probs=74.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||+|||+|.||..++..+.+.. ....+.++++++++++.+.+.+++ .+..+.+++++ +.|+|++++|+..+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~----~~~~~~~~~~~--~advVil~v~~~~~ 75 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGV----RAATDNQEAAQ--EADVVVLAVKPQVM 75 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCC----eecCChHHHHh--cCCEEEEEcCHHHH
Confidence 468999999999999999887653 223466899999999988887775 46778888876 48999999999988
Q ss_pred HHHHHHHHHc-CCeEEEeCCCCCCHHHHH
Q 018020 87 VKWAISVAQK-KKHLLMEKPMALNVAEFD 114 (362)
Q Consensus 87 ~~~~~~al~~-gk~V~~EKP~~~~~~~~~ 114 (362)
.+++...... ++.|+.-.. +.+.+..+
T Consensus 76 ~~v~~~l~~~~~~~vvs~~~-gi~~~~l~ 103 (267)
T PRK11880 76 EEVLSELKGQLDKLVVSIAA-GVTLARLE 103 (267)
T ss_pred HHHHHHHHhhcCCEEEEecC-CCCHHHHH
Confidence 8888776543 455554332 33444433
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-06 Score=79.76 Aligned_cols=110 Identities=20% Similarity=0.299 Sum_probs=82.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
+||+|||+|.||..++..+.+. +.+|. ++|+++++.+.+.+ .+. ...++++++++. .|+|++++|+..|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~-g~~v~-~~d~~~~~~~~~~~-~g~----~~~~~~~e~~~~--~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA-GYSLV-VYDRNPEAVAEVIA-AGA----ETASTAKAVAEQ--CDVIITMLPNSPHVK 73 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHH-CCC----eecCCHHHHHhc--CCEEEEeCCCHHHHH
Confidence 5899999999999999998765 67765 78999988877654 343 467899999874 999999999988766
Q ss_pred HHH-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 89 WAI-------SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 89 ~~~-------~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+. ..++.|+ ++++-- +.++..++++.+.+++.|..+..
T Consensus 74 ~v~~~~~~~~~~~~~g~-iiid~s-t~~~~~~~~l~~~~~~~g~~~~d 119 (296)
T PRK11559 74 EVALGENGIIEGAKPGT-VVIDMS-SIAPLASREIAAALKAKGIEMLD 119 (296)
T ss_pred HHHcCcchHhhcCCCCc-EEEECC-CCCHHHHHHHHHHHHHcCCcEEE
Confidence 553 2233343 455532 55778889999998888766543
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-06 Score=79.27 Aligned_cols=112 Identities=12% Similarity=0.169 Sum_probs=82.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
|||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+.+. +. ..+.+++++.+. .++|+|++++|+....
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~-g~~V~-~~dr~~~~~~~l~~~-g~----~~~~s~~~~~~~~~~~dvIi~~vp~~~~~ 73 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR-GHDCV-GYDHDQDAVKAMKED-RT----TGVANLRELSQRLSAPRVVWVMVPHGIVD 73 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHc-CC----cccCCHHHHHhhcCCCCEEEEEcCchHHH
Confidence 4799999999999999999876 67776 699999999988764 33 345788887653 4689999999998555
Q ss_pred HHHHHHH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 88 KWAISVA---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 88 ~~~~~al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+++...+ +.| +++++- -+.+..+..++.+.+++.|+.+..
T Consensus 74 ~v~~~l~~~l~~g-~ivid~-st~~~~~t~~~~~~~~~~g~~~vd 116 (298)
T TIGR00872 74 AVLEELAPTLEKG-DIVIDG-GNSYYKDSLRRYKLLKEKGIHLLD 116 (298)
T ss_pred HHHHHHHhhCCCC-CEEEEC-CCCCcccHHHHHHHHHhcCCeEEe
Confidence 5554433 334 466662 234557888888888888876543
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=82.51 Aligned_cols=117 Identities=15% Similarity=0.147 Sum_probs=90.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc---CCCCCCcccCCHHHHhcC-CCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN---NFPPDAKVYGSYEALLDD-KDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~ 82 (362)
...+||+||+|.||..++..|.+. +++|+ |+||++++++.+.+.. |.. ....+.|++|+.+. ..+|+|+++.|
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~-G~~V~-V~NRt~~k~~~l~~~~~~~Ga~-~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKKEGNL-PLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhC-CCeEE-EECCCHHHHHHHHHhhhhcCCc-ccccCCCHHHHHhcCCCCCEEEEECC
Confidence 456899999999999999999877 78755 9999999999987742 311 12367899999864 46999999999
Q ss_pred CcccHHHHH----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAI----SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~----~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+....+-+. ..++.| .++++-- +.++++.+++.+.++++|+.+.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G-~iiID~s-T~~~~~t~~~~~~l~~~Gi~fl 129 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPG-DCIIDGG-NEWYENTERRIKEAAEKGLLYL 129 (493)
T ss_pred CcHHHHHHHHHHHhhcCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCeEE
Confidence 998766664 233445 5777743 5578999999999998877644
|
|
| >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.4e-06 Score=73.75 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=108.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH-HHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN-FAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~-~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
|++.+.|+|+.|...++.+.++|++++|++++++.++.-+ +.+--|.+ .++...++++..++.-.-++++...-+ .
T Consensus 3 ~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~-~- 80 (350)
T COG3804 3 LRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLP-S- 80 (350)
T ss_pred ceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccc-h-
Confidence 7899999999999999999999999999999998766543 33333443 245567888888886444555555444 3
Q ss_pred HHHHHHHHHcCCeEEEe-----CCCCCCHHHHHHHHHHHHHcCC-EEEEeeecccCh-hHHHHHHhhcCCCCccceEEEE
Q 018020 87 VKWAISVAQKKKHLLME-----KPMALNVAEFDVILNACEENGV-QLMDGTMWVHNP-RTAQMKEFVSDPQRFGQLRTMH 159 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~E-----KP~~~~~~~~~~l~~~a~~~~~-~~~v~~~~r~~p-~~~~~k~~i~~~g~iG~i~~i~ 159 (362)
.+...++|++|++|+|- -|.....+.+.++.+.|.++|. .+... --.| +...+--++ -+|..-+|..++
T Consensus 81 ~~~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn~Tl~gt---GI~pGF~~dllpml-Lsgpcteve~ir 156 (350)
T COG3804 81 VDEYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGNATLHGT---GIGPGFVTDLLPML-LSGPCTEVEFIR 156 (350)
T ss_pred HHHHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCCceEEec---ccCccHHHHHHHHH-HcccccceEEEe
Confidence 88899999999999987 6888899999999999999998 55433 2344 333344444 456666777766
Q ss_pred EEe
Q 018020 160 SCF 162 (362)
Q Consensus 160 ~~~ 162 (362)
+.-
T Consensus 157 ~~e 159 (350)
T COG3804 157 SEE 159 (350)
T ss_pred eee
Confidence 654
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=6e-06 Score=74.95 Aligned_cols=101 Identities=14% Similarity=0.237 Sum_probs=72.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCC--cEEEEEEcCCHHHHHHHHHHc-CCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPN--AVLSAVASRSLEKATNFAKAN-NFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~--~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|||+|||+|.||..++..|.+... .+-+.+++|++++++.+++++ ++ ....+.++++.. .|+|++++|+..
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~----~~~~~~~~~~~~--aDiVilav~p~~ 74 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGI----HVAKTIEEVISQ--SDLIFICVKPLD 74 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCe----EEECCHHHHHHh--CCEEEEecCHHH
Confidence 479999999999999999876642 234668999999998888876 43 567888888764 899999999888
Q ss_pred cHHHHHHHH---HcCCeEEEeCCCCCCHHHHHHH
Q 018020 86 HVKWAISVA---QKKKHLLMEKPMALNVAEFDVI 116 (362)
Q Consensus 86 h~~~~~~al---~~gk~V~~EKP~~~~~~~~~~l 116 (362)
..+++.... +.++. ++--.-+.+.+..+++
T Consensus 75 ~~~vl~~l~~~l~~~~~-iis~~ag~~~~~L~~~ 107 (273)
T PRK07680 75 IYPLLQKLAPHLTDEHC-LVSITSPISVEQLETL 107 (273)
T ss_pred HHHHHHHHHhhcCCCCE-EEEECCCCCHHHHHHH
Confidence 777766543 33443 3332333466555554
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.46 E-value=2e-06 Score=77.84 Aligned_cols=102 Identities=7% Similarity=0.126 Sum_probs=76.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+||++||+|.||...+..|.+.. ..+ +.++|+++++++.+.+++|+ ..+++.++++.+ .|+|++++||..
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~-I~v~~r~~~~~~~l~~~~g~----~~~~~~~e~~~~--aDiIiLavkP~~ 75 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQ-IICSDLNVSNLKNASDKYGI----TITTNNNEVANS--ADILILSIKPDL 75 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCce-EEEECCCHHHHHHHHHhcCc----EEeCCcHHHHhh--CCEEEEEeChHH
Confidence 57999999999999999987653 234 45789999999988887875 467888888874 899999999855
Q ss_pred cHHHHHHHHH--cCCeEEEeCCCCCCHHHHHHHH
Q 018020 86 HVKWAISVAQ--KKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 86 h~~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
-.+++..... .+.++++.=-.+.++++.++++
T Consensus 76 ~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~~l 109 (272)
T PRK12491 76 YSSVINQIKDQIKNDVIVVTIAAGKSIKSTENEF 109 (272)
T ss_pred HHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHHhc
Confidence 5555544322 2345676666677888887765
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-07 Score=83.06 Aligned_cols=102 Identities=14% Similarity=0.117 Sum_probs=78.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc---CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN---NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..-++||||+|.+|..|+..+......+-+.|+|+++++++.+++++ ++ .+..++|.+++++ +.|+|+.+||.
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~--~v~~~~~~~eav~--~aDiVitaT~s 202 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEV--PVRAATDPREAVE--GCDILVTTTPS 202 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCC--cEEEeCCHHHHhc--cCCEEEEecCC
Confidence 35789999999999999999887778888999999999999988754 43 2456899999997 49999999987
Q ss_pred cccHHHH-HHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 84 SMHVKWA-ISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 84 ~~h~~~~-~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
.. +++ ...++.|.||.+ ++.+....+|+-
T Consensus 203 ~~--P~~~~~~l~~g~~v~~---vGs~~p~~~Eld 232 (325)
T TIGR02371 203 RK--PVVKADWVSEGTHINA---IGADAPGKQELD 232 (325)
T ss_pred CC--cEecHHHcCCCCEEEe---cCCCCcccccCC
Confidence 43 333 446799999885 554444444444
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-08 Score=73.09 Aligned_cols=90 Identities=22% Similarity=0.199 Sum_probs=72.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++.|++|+|+|+.|+..+....+..++.+++++|.++++.- ++. .+..+|.+.+++.+..++|+.++++|+..-
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G---~~i---~gipV~~~~~~l~~~~~i~iaii~VP~~~a 75 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG---KEI---GGIPVYGSMDELEEFIEIDIAIITVPAEAA 75 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT---SEE---TTEEEESSHHHHHHHCTTSEEEEES-HHHH
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC---cEE---CCEEeeccHHHhhhhhCCCEEEEEcCHHHH
Confidence 57899999999999977655555568999999999987433 222 134589999999876579999999999999
Q ss_pred HHHHHHHHHcC-CeEEE
Q 018020 87 VKWAISVAQKK-KHLLM 102 (362)
Q Consensus 87 ~~~~~~al~~g-k~V~~ 102 (362)
.+.+.+++++| |.|++
T Consensus 76 ~~~~~~~~~~gIk~i~n 92 (96)
T PF02629_consen 76 QEVADELVEAGIKGIVN 92 (96)
T ss_dssp HHHHHHHHHTT-SEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 99999999999 66765
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-05 Score=73.95 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=134.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEEc-CCHHHHHHHHHHcCCCC---------------------CCccc-
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPN-AVLSAVAS-RSLEKATNFAKANNFPP---------------------DAKVY- 62 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~d-~~~~~~~~~~~~~~~~~---------------------~~~~~- 62 (362)
+.||+|+|+ |++|..-+..++++|+ ++++++.- .+.+.+...+++|.... ++.++
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~ 136 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAENPDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIP 136 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEE
Confidence 469999998 9999999999988875 99988764 45556666555554210 01222
Q ss_pred --CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 63 --GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 63 --~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
+++.++++.+++|+|+.+.--..-..-...|+++||+|.+--- -.=+.....+.++++++|..+.. -+....
T Consensus 137 G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VALANK-ESLV~aG~lI~~~ak~~~~~IlP-----VDSEHs 210 (454)
T PLN02696 137 GEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK-ETLIAGGPFVLPLAKKHGVKILP-----ADSEHS 210 (454)
T ss_pred CHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEEEecH-HHHHhhHHHHHHHHHHcCCeEee-----cchhhH
Confidence 3566777778899999998888777778999999999886322 01245566778899999987763 355566
Q ss_pred HHHHhhcCCCCccceEEEEEEeeecCCccc--------------ccCccCcCCCCCCCcccccccc---hHHHH--HHHH
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDGLGALGDAGW---YGIRS--ILWA 201 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~ggg~l~~~g~---h~id~--~~~l 201 (362)
.+-+++ ....-+.|..+...-+..+...+ ...+|..-+ .+-.|-.+ -.+.+ ..||
T Consensus 211 AIfQ~L-~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~ALkHP~W~MG~-----KITIDSATmmNKglEvIEA~~L 284 (454)
T PLN02696 211 AIFQCI-QGLPEGGLRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGK-----KITVDSATLMNKGLEVIEAHYL 284 (454)
T ss_pred HHHHHc-cCCCccCccEEEEECCchhccCCCHHHHhCCCHHHHhhCCCCcCCC-----eeeeehHhhhhhhHHHHHHHHH
Confidence 777777 43333456666655443221110 113343311 23233211 11233 4788
Q ss_pred ccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 202 NDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 202 ~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
||. +++++.....+ ....+.+++|.||.+
T Consensus 285 F~~-~~d~I~vvIHP-------qSiIHsmVef~DGS~ 313 (454)
T PLN02696 285 FGA-DYDDIDIVIHP-------QSIIHSMVETQDSSV 313 (454)
T ss_pred cCC-CHHHeEEEECc-------CCeeeEEEEEcCCcE
Confidence 985 36777777322 236788999999975
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.4e-06 Score=76.74 Aligned_cols=110 Identities=14% Similarity=0.189 Sum_probs=84.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~ 89 (362)
||++||+|.||...+..+.+. +.+| .++|+++++.+.+.+. +. ....+..++++. .|+|++++|+..+.+.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V-~v~d~~~~~~~~~~~~-g~----~~~~s~~~~~~~--aDvVi~~vp~~~~~~~ 73 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-GHQL-QVFDVNPQAVDALVDK-GA----TPAASPAQAAAG--AEFVITMLPNGDLVRS 73 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-CCeE-EEEcCCHHHHHHHHHc-CC----cccCCHHHHHhc--CCEEEEecCCHHHHHH
Confidence 799999999999999999876 5665 4899999998887664 33 467889998875 8999999999876554
Q ss_pred HHH----H---HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 90 AIS----V---AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 90 ~~~----a---l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+.. . ++.| .++++.- +.++...+++.+.+.+.|..+..+
T Consensus 74 vl~~~~~i~~~l~~g-~lvid~s-T~~p~~~~~l~~~l~~~g~~~lda 119 (296)
T PRK15461 74 VLFGENGVCEGLSRD-ALVIDMS-TIHPLQTDKLIADMQAKGFSMMDV 119 (296)
T ss_pred HHcCcccHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCcEEEc
Confidence 432 1 2233 3666654 668999999999999888775543
|
|
| >PRK06813 homoserine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.8e-06 Score=76.86 Aligned_cols=150 Identities=12% Similarity=0.089 Sum_probs=98.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC---------CCcEEEEEEcCCHHHHH-------HHHHHcCCCC--CCcccCCHHHHh
Q 018020 8 AIRFGIIGAADIARKLSRAITLA---------PNAVLSAVASRSLEKAT-------NFAKANNFPP--DAKVYGSYEALL 69 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~---------~~~~vv~v~d~~~~~~~-------~~~~~~~~~~--~~~~~~~~~e~l 69 (362)
+++|+|+|+|.+|...++.+.+. -+++|++|++++..... .+.+.-..+. ......+.++++
T Consensus 2 ~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (346)
T PRK06813 2 KIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERA 81 (346)
T ss_pred eeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHh
Confidence 59999999999999887776432 25789999987543322 1100000000 000223445555
Q ss_pred cCC-CCcEEEEcCCCc-----ccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEe-eecccChhHH
Q 018020 70 DDK-DIDAVYLPLPTS-----MHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDG-TMWVHNPRTA 140 (362)
Q Consensus 70 ~~~-~~D~V~i~~~~~-----~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~-~~~r~~p~~~ 140 (362)
.++ ++|+|+=+||+. .-..++.+||++||||..- | |++.. .++|.++|+++|+.+... .-----|.+.
T Consensus 82 ~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~---~~eL~~lA~~~g~~~~yEasVggGiPiI~ 158 (346)
T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTN---WREINEAAKIANVRIRYSGATAAALPTLD 158 (346)
T ss_pred cCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhcc---HHHHHHHHHHcCCeEEEeeeeeeccchHH
Confidence 444 789999999875 3468889999999999854 4 54443 488888999999987643 3444688999
Q ss_pred HHHHhhcCCCCccceEEEEEEeee
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.++..+ . | -+|..++..++.
T Consensus 159 ~l~~~~-~-g--~~I~~i~GIlNG 178 (346)
T PRK06813 159 IGQFSL-A-G--CHIEKIEGILNG 178 (346)
T ss_pred HHhhhc-c-c--CcEEEEEEEEec
Confidence 986554 2 2 367788876653
|
|
| >PLN02700 homoserine dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=75.40 Aligned_cols=152 Identities=12% Similarity=0.104 Sum_probs=98.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcCCH--------------HHHHHHHHHcCCCCCCccc-
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASRSL--------------EKATNFAKANNFPPDAKVY- 62 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~~~--------------~~~~~~~~~~~~~~~~~~~- 62 (362)
|++++|+|||+|.+|+..++.+.+.. ++.|++|+|... +...+.............+
T Consensus 1 m~~i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~~ 80 (377)
T PLN02700 1 MKKIPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSALG 80 (377)
T ss_pred CcEEEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhhh
Confidence 35899999999999998776653321 378889988421 1111110010000000001
Q ss_pred ------------------CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHH
Q 018020 63 ------------------GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEE 122 (362)
Q Consensus 63 ------------------~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~ 122 (362)
.+..+.+.....++++-||++..-.++...+|++|+||..- | |++.+.++.+++. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la----~ 156 (377)
T PLN02700 81 ALAGGCQVFNNSELSRKVIDIATLLGKSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLA----A 156 (377)
T ss_pred hccccccccccccccchhhhHHHHhhccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHH----H
Confidence 22334443334689999999977789999999999998843 4 7788888877766 2
Q ss_pred cCCEEEE-eeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 123 NGVQLMD-GTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 123 ~~~~~~v-~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
+|+.+.. +.-----|.+..+++++ ..| -+|..|+..++.
T Consensus 157 ~~~~~~yEatVgaGlPiI~tl~~ll-~sG--d~I~~I~GIlnG 196 (377)
T PLN02700 157 HPRRIRHESTVGAGLPVIASLNRIL-SSG--DPVHRIVGSLSG 196 (377)
T ss_pred cCCeEEEEeeeeeccchHHHHHHHh-hcc--CCEEEEEEEEeC
Confidence 5766653 33444689999999998 444 368888887764
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.5e-07 Score=82.99 Aligned_cols=114 Identities=20% Similarity=0.150 Sum_probs=85.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+++|||+|.+|..|+..+....+++-+.+++|++++++++++++ +++ +..++|+++++.+ .|+|+.+||.
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~--v~~~~d~~~al~~--aDiVi~aT~s 207 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP--VTVARDVHEAVAG--ADIIVTTTPS 207 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce--EEEeCCHHHHHcc--CCEEEEeeCC
Confidence 4589999999999999999886556778889999999999998865 332 3457899999985 8999999987
Q ss_pred cccHHHHHH-HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 84 SMHVKWAIS-VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 84 ~~h~~~~~~-al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.. +++.. .++.|.||.+ ++.+....+++....-+....+.+.
T Consensus 208 ~~--p~i~~~~l~~g~~v~~---vg~d~~~~rEld~~~l~~a~~v~vD 250 (330)
T PRK08291 208 EE--PILKAEWLHPGLHVTA---MGSDAEHKNEIAPAVFAAADLYVCD 250 (330)
T ss_pred CC--cEecHHHcCCCceEEe---eCCCCCCcccCCHHHHhhCCEEEeC
Confidence 53 44433 4789999986 7777777777755444433334443
|
|
| >PLN02775 Probable dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.3e-06 Score=75.56 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=89.5
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHH-HHcCCCCCCccc--CCHHHHhcCC---CCc-EEE
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFA-KANNFPPDAKVY--GSYEALLDDK---DID-AVY 78 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~-~~~~~~~~~~~~--~~~~e~l~~~---~~D-~V~ 78 (362)
..+||.+.|+ |.||+..+..+.+ ++++||+..|+.+.- +... +-.|. ++.++ +|++++|... .+| ++|
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~-~~~~Lv~~~~~~~~~-~~~~~~~~g~--~v~~~~~~dl~~~l~~~~~~~~~~VvI 85 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVS-AGLQLVPVSFTGPAG-VGVTVEVCGV--EVRLVGPSEREAVLSSVKAEYPNLIVV 85 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhc-CCCEEEEEecccccc-ccccceeccc--eeeeecCccHHHHHHHhhccCCCEEEE
Confidence 4689999997 8899999999988 899999999976532 1111 11222 24577 9999999654 799 788
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
-.|.|..-.+.+..|+++|+++.+-.. +.+.++.+ +.++++++.+....|+
T Consensus 86 DFT~P~a~~~~~~~~~~~g~~~VvGTT-G~~~e~l~---~~~~~~~i~vv~apNf 136 (286)
T PLN02775 86 DYTLPDAVNDNAELYCKNGLPFVMGTT-GGDRDRLL---KDVEESGVYAVIAPQM 136 (286)
T ss_pred ECCChHHHHHHHHHHHHCCCCEEEECC-CCCHHHHH---HHHhcCCccEEEECcc
Confidence 899999999999999999999998766 45666444 5555566766665554
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.36 E-value=1e-05 Score=78.47 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=83.9
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~~ 88 (362)
+||+||+|.||...+..+.+. +++|+ ++|+++++.+.+.+++....++..+++++++.+. .++|+|++++|+....+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~-G~~V~-v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH-GFTVS-VYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 489999999999999999877 67755 8999999999998764211123467889998864 46899999999976655
Q ss_pred HHHHHH----HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 89 WAISVA----QKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 89 ~~~~al----~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
-+...+ +.| +++++-- +.+..+..+..+.++++|+.+.
T Consensus 79 ~Vi~~l~~~L~~g-~iIID~g-ns~~~~t~~~~~~l~~~gi~fv 120 (467)
T TIGR00873 79 AVINQLLPLLEKG-DIIIDGG-NSHYPDTERRYKELKAKGILFV 120 (467)
T ss_pred HHHHHHHhhCCCC-CEEEECC-CcCHHHHHHHHHHHHhcCCEEE
Confidence 554333 334 5777722 2467888888888888776543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.7e-06 Score=75.36 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=81.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~ 89 (362)
||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+.+. |. ...++.++++++ .|+|++++|+..+...
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~----~~~~~~~~~~~~--aDivi~~vp~~~~~~~ 71 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA-GYQLH-VTTIGPEVADELLAA-GA----VTAETARQVTEQ--ADVIFTMVPDSPQVEE 71 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHHC-CC----cccCCHHHHHhc--CCEEEEecCCHHHHHH
Confidence 589999999999999998876 67766 789999988877653 42 356788898875 9999999998766554
Q ss_pred HH---H-HH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 90 AI---S-VA---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 90 ~~---~-al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+. . ++ +.| .++++-- +.++...+++.+.+++.|..+..
T Consensus 72 v~~~~~~~~~~~~~g-~iivd~s-t~~~~~~~~l~~~l~~~g~~~~~ 116 (291)
T TIGR01505 72 VAFGENGIIEGAKPG-KTLVDMS-SISPIESKRFAKAVKEKGIDYLD 116 (291)
T ss_pred HHcCcchHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCCEEe
Confidence 43 1 22 233 3555532 56788889999999888776554
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-06 Score=75.51 Aligned_cols=103 Identities=10% Similarity=0.154 Sum_probs=73.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+||+|||+|.||..++..+.+.+ ..+++++..+.+++.+.+...++ ......+.+++++. .|+|++++|+..
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~---~~~~~~~~~e~~~~--aDvVilavpp~~ 76 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP---TVELADNEAEIFTK--CDHSFICVPPLA 76 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC---CeEEeCCHHHHHhh--CCEEEEecCHHH
Confidence 47999999999999999887653 25666444444555666666553 12456788888764 899999999988
Q ss_pred cHHHHHHH---HHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 86 HVKWAISV---AQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 86 h~~~~~~a---l~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
+.+++... ++.+++|++ ..-+.+.++.+++.
T Consensus 77 ~~~vl~~l~~~l~~~~~ivS-~~aGi~~~~l~~~~ 110 (277)
T PRK06928 77 VLPLLKDCAPVLTPDRHVVS-IAAGVSLDDLLEIT 110 (277)
T ss_pred HHHHHHHHHhhcCCCCEEEE-ECCCCCHHHHHHHc
Confidence 88877755 345666554 55667888777754
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-06 Score=80.50 Aligned_cols=103 Identities=15% Similarity=0.071 Sum_probs=77.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
...+++|||+|.+|..|+..+....+.+-+.|++|+++++++++++++-. .. ..+++.++++. +.|+|+.+||...
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~-~~~~~~~~av~--~aDiVitaT~s~~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPT-AEPLDGEAIPE--AVDLVVTATTSRT 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCe-eEECCHHHHhh--cCCEEEEccCCCC
Confidence 34689999999999999999876556667889999999999999987411 11 12678999887 5999999999864
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
+++...++.|.||.+ ++.+....+|+-
T Consensus 201 --Pl~~~~~~~g~hi~~---iGs~~p~~~El~ 227 (304)
T PRK07340 201 --PVYPEAARAGRLVVA---VGAFTPDMAELA 227 (304)
T ss_pred --ceeCccCCCCCEEEe---cCCCCCCcccCC
Confidence 444456789999986 554444444433
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5.6e-06 Score=77.22 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=74.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CC--CCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NF--PPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~--~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
.|||+|||+|.||..++..|.+. +.+|. ++++++++++.+.+.. |. +..+...+++++.++. .|+|+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~-G~~V~-~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~--aD~Vi 79 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASK-GVPVR-LWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG--ADFAV 79 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC--CCEEE
Confidence 57999999999999999998766 56655 7899988888777542 21 1113456788888764 89999
Q ss_pred EcCCCcccHHHHHHHHHcCCe-EEEeCCCCCCHHHHHHHHHHHHH
Q 018020 79 LPLPTSMHVKWAISVAQKKKH-LLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~-V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
+++|+....+++ ..++.+.. |.+-|.+.......+++.+...+
T Consensus 80 ~~v~~~~~~~v~-~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 80 VAVPSKALRETL-AGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred EECchHHHHHHH-HhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 999999654443 44556654 44777665442224444444443
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-05 Score=76.72 Aligned_cols=115 Identities=23% Similarity=0.312 Sum_probs=82.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
.+|||||+|.||..++..|.+. +++|. ++|+++++.+.+.+....+ .....++|++|+++. +++|+|+++.++...
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-G~~V~-v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~ 79 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-GFKIS-VYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH
Confidence 3699999999999999999877 67744 8999999998887642110 112468899999875 468999998777655
Q ss_pred HHHHHHH----HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 87 VKWAISV----AQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 87 ~~~~~~a----l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
.+-+... ++.| .++++-- ..+..+..++.+.++++|+.+
T Consensus 80 v~~vi~~l~~~L~~g-~iIID~g-n~~~~dt~~r~~~l~~~Gi~f 122 (470)
T PTZ00142 80 VDETIDNLLPLLEKG-DIIIDGG-NEWYLNTERRIKRCEEKGILY 122 (470)
T ss_pred HHHHHHHHHhhCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCeE
Confidence 4444332 3334 5666632 446788888888888877654
|
|
| >KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.7e-05 Score=67.16 Aligned_cols=150 Identities=11% Similarity=0.151 Sum_probs=106.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcC---------CHHHH-----HHHHHHcCCCCCCcccC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASR---------SLEKA-----TNFAKANNFPPDAKVYG 63 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~---------~~~~~-----~~~~~~~~~~~~~~~~~ 63 (362)
|++++|+++|||.+|..+++.+..+. .++++++||. .++.. .++.+..+ ..+
T Consensus 1 ~k~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~~p~nl~sewk~~L~~st~-----~al- 74 (364)
T KOG0455|consen 1 MKKVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDVLPENLNSEWKSELIKSTG-----SAL- 74 (364)
T ss_pred CccccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEecccccccccccChhhhchHHHHHHHHhcC-----Ccc-
Confidence 35899999999999997666553321 4799999985 12222 22333333 122
Q ss_pred CHHHHhc----CCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh
Q 018020 64 SYEALLD----DKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM--EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNP 137 (362)
Q Consensus 64 ~~~e~l~----~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~--EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p 137 (362)
+++.+++ .+.+=+++-+|...+-.++-.++++.|..+.. -||++.+++..+.|....+..+........----|
T Consensus 75 sLdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss~l~~y~~l~~~~~s~~fi~HEatVGAGLP 154 (364)
T KOG0455|consen 75 SLDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSSTLEHYDKLALHSKSPRFIRHEATVGAGLP 154 (364)
T ss_pred cHHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccccHHHHHHHHhcCCCCceEEeeccccCCch
Confidence 3666543 46666777788888999999999999987764 58999999999999887764443444444455689
Q ss_pred hHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 138 RTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 138 ~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.+..++++| ..| -+|..|+..|+.
T Consensus 155 iIs~L~eiI-~tG--Dev~kIeGifSG 178 (364)
T KOG0455|consen 155 IISSLNEII-STG--DEVHKIEGIFSG 178 (364)
T ss_pred hHHHHHHHH-hcC--CceeEEEEEeec
Confidence 999999999 655 468888888764
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=72.83 Aligned_cols=110 Identities=14% Similarity=0.211 Sum_probs=81.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||++||+|.||...+..|.+. ++++. ++|+++. ++.+. +.|. ....+..++++ +.|+|++++|+..+.+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~-G~~v~-v~~~~~~-~~~~~-~~g~----~~~~s~~~~~~--~advVi~~v~~~~~v~ 70 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA-GHQLH-VTTIGPV-ADELL-SLGA----VSVETARQVTE--ASDIIFIMVPDTPQVE 70 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-CCeEE-EEeCCHh-HHHHH-HcCC----eecCCHHHHHh--cCCEEEEeCCChHHHH
Confidence 3799999999999999999876 57765 7888874 45554 3453 46788989876 4899999999986544
Q ss_pred HHHH-------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 89 WAIS-------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 89 ~~~~-------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
-+.. .+..| .++++- -+.+++..+++.+.++++|..+..+
T Consensus 71 ~v~~~~~g~~~~~~~g-~ivvd~-sT~~p~~~~~~~~~~~~~G~~~vda 117 (292)
T PRK15059 71 EVLFGENGCTKASLKG-KTIVDM-SSISPIETKRFARQVNELGGDYLDA 117 (292)
T ss_pred HHHcCCcchhccCCCC-CEEEEC-CCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 4321 12334 466664 3678999999999999998876553
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-06 Score=78.13 Aligned_cols=115 Identities=17% Similarity=0.067 Sum_probs=84.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..-+|+|||+|.+|..++..+....+++-+.|++|++++++.+++++.-. ..+..+++.++.+.. .|+|+.+|+..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~--aDIVi~aT~s~- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQ--ADIISCATLST- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhc--CCEEEEeeCCC-
Confidence 34689999999999999887765434555669999999999999886310 124567899998874 99998888876
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
+.-+-...++.|.||.+ ++.+....+|+-....+.+..+
T Consensus 201 ~pvl~~~~l~~g~~i~~---ig~~~~~~~El~~~~~~~a~~~ 239 (314)
T PRK06141 201 EPLVRGEWLKPGTHLDL---VGNFTPDMRECDDEAIRRASVY 239 (314)
T ss_pred CCEecHHHcCCCCEEEe---eCCCCcccccCCHHHHhcCcEE
Confidence 33233467889998886 5666667777776666555443
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.1e-06 Score=76.58 Aligned_cols=99 Identities=18% Similarity=0.087 Sum_probs=74.5
Q ss_pred EEEEEeccHHHHHHHHHHhcC---CCcEEEEEEcCCHHHHHHHHHHcCCCC-------------------CCccc--CCH
Q 018020 10 RFGIIGAADIARKLSRAITLA---PNAVLSAVASRSLEKATNFAKANNFPP-------------------DAKVY--GSY 65 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~---~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------------~~~~~--~~~ 65 (362)
||||+|+|.+|+.+++.+... ++++|+++.|....+..+..-+|+... .+.++ .++
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~p 80 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPTP 80 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCCh
Confidence 699999999999999998764 369999999976655444444444211 11111 244
Q ss_pred HHHh-cCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCCC
Q 018020 66 EALL-DDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMAL 108 (362)
Q Consensus 66 ~e~l-~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~~ 108 (362)
+++- .+.++|+|+.||+...+.+.+..++++| +.|++.+|+..
T Consensus 81 ~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~ 125 (325)
T TIGR01532 81 EALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGAS 125 (325)
T ss_pred hhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcC
Confidence 4442 3458999999999999999999999999 99999999764
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.6e-06 Score=67.46 Aligned_cols=88 Identities=18% Similarity=0.321 Sum_probs=66.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---------CCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---------FPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
||+|||+|.+|...+..+... +.+ |-++.++++..+.+.+... ++....+.+|+++.+++ .|+|+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~-g~~-V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~--ad~Iiia 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN-GHE-VTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED--ADIIIIA 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC-TEE-EEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT---SEEEE-
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCE-EEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc--ccEEEec
Confidence 799999999999999988877 455 4489999988888876543 12345678999999986 8999999
Q ss_pred CCCcccHHHHHHHHH---cCCeEE
Q 018020 81 LPTSMHVKWAISVAQ---KKKHLL 101 (362)
Q Consensus 81 ~~~~~h~~~~~~al~---~gk~V~ 101 (362)
+|...|.+++.+... .+..++
T Consensus 77 vPs~~~~~~~~~l~~~l~~~~~ii 100 (157)
T PF01210_consen 77 VPSQAHREVLEQLAPYLKKGQIII 100 (157)
T ss_dssp S-GGGHHHHHHHHTTTSHTT-EEE
T ss_pred ccHHHHHHHHHHHhhccCCCCEEE
Confidence 999999988887654 455554
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-06 Score=72.50 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=77.9
Q ss_pred CceeEEEEEeccHHHHHHHHH-HhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRA-ITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~-~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.++.++.|||+|.+|+..+.. +.+..++++++++|.+++..-.... ++| +.-.+++++.+++.++|++++++|..
T Consensus 82 ~~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~--~v~--V~~~d~le~~v~~~dv~iaiLtVPa~ 157 (211)
T COG2344 82 DKTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG--DVP--VYDLDDLEKFVKKNDVEIAILTVPAE 157 (211)
T ss_pred CcceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC--Cee--eechHHHHHHHHhcCccEEEEEccHH
Confidence 357899999999999987664 3345589999999999885443222 233 23457888889888999999999998
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCCCCCHH
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPMALNVA 111 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~~~~~~ 111 (362)
.-.+.+....++| |-|+-=.|+-.++.
T Consensus 158 ~AQ~vad~Lv~aGVkGIlNFtPv~l~~p 185 (211)
T COG2344 158 HAQEVADRLVKAGVKGILNFTPVRLQVP 185 (211)
T ss_pred HHHHHHHHHHHcCCceEEeccceEecCC
Confidence 8889999999999 77776666554433
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=81.66 Aligned_cols=155 Identities=9% Similarity=0.054 Sum_probs=104.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcCCHHHH-------HHHHHHcCCCCCCcccCCHHHHhcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASRSLEKA-------TNFAKANNFPPDAKVYGSYEALLDD 71 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~l~~ 71 (362)
++++|+|+|+|..|...++.+.+.. +++|++|++++.... ..+.+...-.....-.+++-+++..
T Consensus 464 ~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (819)
T PRK09436 464 QVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVKE 543 (819)
T ss_pred ccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHhh
Confidence 5899999999999998877764321 578899987533211 1111111100000012233344433
Q ss_pred C--CCcEEEEcCCCcccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEe-eecccChhHHHHHHhh
Q 018020 72 K--DIDAVYLPLPTSMHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDG-TMWVHNPRTAQMKEFV 146 (362)
Q Consensus 72 ~--~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~-~~~r~~p~~~~~k~~i 146 (362)
. ..|+|+=||+...-.....+||++|+||..- | |++.+.+...+|.++|+++|+.+... .-----|.+..+++++
T Consensus 544 ~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPii~~l~~~~ 623 (819)
T PRK09436 544 YHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPVIETLQNLL 623 (819)
T ss_pred cCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccchHHHHHHHH
Confidence 2 3589999999877677778999999999854 4 66777789999999999999988643 3334679999999987
Q ss_pred cCCCCccceEEEEEEeee
Q 018020 147 SDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 147 ~~~g~iG~i~~i~~~~~~ 164 (362)
..| -+|..+++.++.
T Consensus 624 -~~g--~~i~~i~GilnG 638 (819)
T PRK09436 624 -NAG--DELLKFEGILSG 638 (819)
T ss_pred -hcc--CcEEEEEEEEeC
Confidence 434 367788776653
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.3e-05 Score=71.73 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=81.5
Q ss_pred EEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHH-
Q 018020 13 IIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAI- 91 (362)
Q Consensus 13 iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~- 91 (362)
+||+|.||...+..+.+. +.+|. ++|+++++.+.+.+ .|. ...+|..++++. .|+|++++|+..+.+.+.
T Consensus 1 ~IGlG~mG~~mA~~L~~~-G~~V~-v~dr~~~~~~~l~~-~g~----~~~~s~~~~~~~--advVil~vp~~~~~~~v~~ 71 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA-GHPVR-VFDLFPDAVEEAVA-AGA----QAAASPAEAAEG--ADRVITMLPAGQHVISVYS 71 (288)
T ss_pred CCcccHhHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHH-cCC----eecCCHHHHHhc--CCEEEEeCCChHHHHHHHc
Confidence 589999999999999866 56754 78999998888765 343 467899999885 899999999977655443
Q ss_pred ---HHH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 92 ---SVA---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 92 ---~al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
..+ +.| .++++-- +.+++..+++.+.++++|+.+..
T Consensus 72 g~~~l~~~~~~g-~~vid~s-t~~p~~~~~~~~~~~~~g~~~vd 113 (288)
T TIGR01692 72 GDEGILPKVAKG-SLLIDCS-TIDPDSARKLAELAAAHGAVFMD 113 (288)
T ss_pred CcchHhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCcEEE
Confidence 222 233 4666655 88999999999999998876544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-05 Score=71.77 Aligned_cols=79 Identities=15% Similarity=0.193 Sum_probs=61.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++++||+|||+|.||..++..+++. +.+|+ ++|++.. ...+.++|+ ..+++.++++. .++|+|++++|+..
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~-G~~V~-~~d~~~~--~~~a~~~gv----~~~~~~~e~~~-~~aDvVilavp~~~ 104 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQ-GHTVL-ATSRSDY--SDIAAELGV----SFFRDPDDFCE-EHPDVVLLCTSILS 104 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhC-CCEEE-EEECccH--HHHHHHcCC----eeeCCHHHHhh-CCCCEEEEecCHHH
Confidence 4678999999999999999999876 57777 5666653 345566775 35788998874 25899999999987
Q ss_pred cHHHHHHH
Q 018020 86 HVKWAISV 93 (362)
Q Consensus 86 h~~~~~~a 93 (362)
..+++...
T Consensus 105 ~~~vl~~l 112 (304)
T PLN02256 105 TEAVLRSL 112 (304)
T ss_pred HHHHHHhh
Confidence 77777665
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.4e-05 Score=79.33 Aligned_cols=89 Identities=13% Similarity=0.183 Sum_probs=65.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.+++||||||+|.||..++..+++. +.+|+ ++|++... ..+.++|+ ..++++++++.. +.|+|++|+|+..
T Consensus 367 ~~~~kIgIIGlG~mG~slA~~L~~~-G~~V~-~~dr~~~~--~~a~~~Gv----~~~~~~~el~~~-~aDvVILavP~~~ 437 (667)
T PLN02712 367 GSKLKIAIVGFGNFGQFLAKTMVKQ-GHTVL-AYSRSDYS--DEAQKLGV----SYFSDADDLCEE-HPEVILLCTSILS 437 (667)
T ss_pred CCCCEEEEEecCHHHHHHHHHHHHC-cCEEE-EEECChHH--HHHHHcCC----eEeCCHHHHHhc-CCCEEEECCChHH
Confidence 3578999999999999999999875 57766 67887543 33455664 467899998763 4899999999877
Q ss_pred cHHHHHHHHH--c-CCeEEEe
Q 018020 86 HVKWAISVAQ--K-KKHLLME 103 (362)
Q Consensus 86 h~~~~~~al~--~-gk~V~~E 103 (362)
-.+++..... . ...++++
T Consensus 438 ~~~vi~~l~~~~lk~g~ivvD 458 (667)
T PLN02712 438 TEKVLKSLPFQRLKRSTLFVD 458 (667)
T ss_pred HHHHHHHHHHhcCCCCcEEEE
Confidence 6766665432 1 1346665
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=98.19 E-value=6e-06 Score=76.80 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=77.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+++|||+|.+|..++..+....+++-+.|++|++++++++++++ ++. +..++++++.+.. .|+|+.+||.
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~--v~~~~~~~~av~~--aDiVvtaT~s 204 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID--VTAATDPRAAMSG--ADIIVTTTPS 204 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce--EEEeCCHHHHhcc--CCEEEEecCC
Confidence 4589999999999999999976667888889999999999998875 432 3447899999874 9999999988
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
.. +-+-...++.|.||.. ++.+...-+|+-
T Consensus 205 ~~-p~i~~~~l~~g~~i~~---vg~~~p~~rEld 234 (326)
T TIGR02992 205 ET-PILHAEWLEPGQHVTA---MGSDAEHKNEID 234 (326)
T ss_pred CC-cEecHHHcCCCcEEEe---eCCCCCCceecC
Confidence 54 2223467899999884 555544444443
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.3e-05 Score=71.33 Aligned_cols=82 Identities=26% Similarity=0.163 Sum_probs=60.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..||+|||+|.||..++..+.+.....-+.++|+++++.+.+. +.|+. .....+.++.++ ++|+|++++|+..+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~--~~~~~~~~~~~~--~aDvViiavp~~~~~ 80 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLG--DRVTTSAAEAVK--GADLVILCVPVGASG 80 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCC--ceecCCHHHHhc--CCCEEEECCCHHHHH
Confidence 4689999999999999999887642223558899988776654 45542 134567888776 499999999998776
Q ss_pred HHHHHHH
Q 018020 88 KWAISVA 94 (362)
Q Consensus 88 ~~~~~al 94 (362)
+++....
T Consensus 81 ~v~~~l~ 87 (307)
T PRK07502 81 AVAAEIA 87 (307)
T ss_pred HHHHHHH
Confidence 6665543
|
|
| >TIGR02130 dapB_plant dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.4e-05 Score=69.75 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=83.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEE-EcCCHHHHHHHHHHcCCCCCCcc------cCCHHHHhcCCCCc-EEEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAV-ASRSLEKATNFAKANNFPPDAKV------YGSYEALLDDKDID-AVYL 79 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v-~d~~~~~~~~~~~~~~~~~~~~~------~~~~~e~l~~~~~D-~V~i 79 (362)
+||.|.|+ |.||+..+..+.+ ++++|++. +|+... .+...+-.+. ++.+ +.+++++++. .+| +++-
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~-~~~~Lv~~~~~~~~~-~~~~~~~~g~--~v~v~~~~~~~~~l~~~~~~-~~d~VvID 75 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA-AGLEIVPTSFGGEEE-AENEAEVAGK--EILLHGPSEREARIGEVFAK-YPELICID 75 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc-CCCEEEeeEcccccc-ccchhhhccc--ceeeeccccccccHHHHHhh-cCCEEEEE
Confidence 58999997 8899999999888 89999998 775432 1222221221 1234 8999999953 588 8888
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
.|.|..-.+.+..|+++|+++.+-.. +.+.++.++|. +.+++.+....|+
T Consensus 76 FT~P~~~~~n~~~~~~~gv~~ViGTT-G~~~~~~~~l~---~~~~i~~l~apNf 125 (275)
T TIGR02130 76 YTHPSAVNDNAAFYGKHGIPFVMGTT-GGDREALAKLV---ADAKHPAVIAPNM 125 (275)
T ss_pred CCChHHHHHHHHHHHHCCCCEEEcCC-CCCHHHHHHHH---HhcCCCEEEECcc
Confidence 99999999999999999999887654 45677666664 3344555554444
|
This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome. |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=98.16 E-value=5e-06 Score=77.84 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=67.2
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CCC--CCcccCCHHH-HhcCCCCcEEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FPP--DAKVYGSYEA-LLDDKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~~--~~~~~~~~~e-~l~~~~~D~V~ 78 (362)
+||+|+|+ |.+|...++.+..+|.++|+++++...+..+.+.+.+. .+. .-..+.++++ .+ .++|+|+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVAS--KDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHh--ccCCEEE
Confidence 58999996 88999999999999999999998876554444443331 110 0001222222 22 3699999
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEE
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
.++|+..|.+++.+++++|++|+.
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VID 102 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFS 102 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999886
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=4.2e-05 Score=78.97 Aligned_cols=155 Identities=14% Similarity=0.044 Sum_probs=102.9
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC---------CCcEEEEEEcCCHHH-------HHHHHHHcC-CCCCCcccCCHHHH
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA---------PNAVLSAVASRSLEK-------ATNFAKANN-FPPDAKVYGSYEAL 68 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~---------~~~~vv~v~d~~~~~-------~~~~~~~~~-~~~~~~~~~~~~e~ 68 (362)
+++++|+|+|+|..|...++.+.+. -+++|++|++++... ...+.+.+. .... .-.+.+-+.
T Consensus 456 ~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~-~~~~~~~e~ 534 (810)
T PRK09466 456 EKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVE-WDEESLFLW 534 (810)
T ss_pred CceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCC-ccHHHHHHH
Confidence 4579999999999999877766432 157899999875321 111211110 0000 011222344
Q ss_pred hcC--CCCcEEEEcCCCcccHHHHHHHHHcCCeEEEe-C-CCCCCHHHHHHHHHHHHHcCCEEEEe-eecccChhHHHHH
Q 018020 69 LDD--KDIDAVYLPLPTSMHVKWAISVAQKKKHLLME-K-PMALNVAEFDVILNACEENGVQLMDG-TMWVHNPRTAQMK 143 (362)
Q Consensus 69 l~~--~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E-K-P~~~~~~~~~~l~~~a~~~~~~~~v~-~~~r~~p~~~~~k 143 (362)
+.. .+.++|+-+|+...-......||++||||..- | +++...+...+|.++++++|+.+... .-----|.+..++
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~yEasV~~giPii~~l~ 614 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLYNATVGAGLPINHTVR 614 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEEeceeeeccChHHHHH
Confidence 432 23468888999887777778999999998853 4 34456789999999999999987643 3334678888888
Q ss_pred HhhcCCCCccceEEEEEEeee
Q 018020 144 EFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 144 ~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.++ +.| -+|..++..++.
T Consensus 615 ~l~-~~g--d~i~~i~GIlnG 632 (810)
T PRK09466 615 DLR-NSG--DSILAISGIFSG 632 (810)
T ss_pred HHH-hcc--CcEEEEEEEEcc
Confidence 887 432 278888887764
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.9e-05 Score=70.22 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=57.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|||++||+|.||...+..|.+.. ..+++...++++++++.+. ++|+ ...++.++++++ .|+|++++++..
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~-~~g~----~~~~~~~e~~~~--aDvVil~v~~~~ 73 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQ-SLGV----KTAASNTEVVKS--SDVIILAVKPQV 73 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHH-HcCC----EEeCChHHHHhc--CCEEEEEECcHH
Confidence 57999999999999999987653 2265533399999887765 4664 467888888874 899999997665
Q ss_pred cHHHHHH
Q 018020 86 HVKWAIS 92 (362)
Q Consensus 86 h~~~~~~ 92 (362)
-.+++..
T Consensus 74 ~~~vl~~ 80 (266)
T PLN02688 74 VKDVLTE 80 (266)
T ss_pred HHHHHHH
Confidence 4555443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=8.5e-05 Score=63.90 Aligned_cols=111 Identities=13% Similarity=0.163 Sum_probs=82.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
|+||+||+|.||...+..+.+. +.++| ++|++++..+.++++- . +..+|++++++. ..+-+|++..|...-.
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~-ghdvV-~yD~n~~av~~~~~~g-a----~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG-GHDVV-GYDVNQTAVEELKDEG-A----TGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC-CCeEE-EEcCCHHHHHHHHhcC-C----ccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5699999999999999999877 78877 7999999888876643 3 567899999875 5688999998877433
Q ss_pred HHHH----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAI----SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~----~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.-+. ..|.+| .|+++- -..+..+..+-.+..+++|+.+.
T Consensus 74 ~~vi~~la~~L~~G-DivIDG-GNS~y~Ds~rr~~~l~~kgi~fl 116 (300)
T COG1023 74 DAVIDDLAPLLSAG-DIVIDG-GNSNYKDSLRRAKLLAEKGIHFL 116 (300)
T ss_pred HHHHHHHHhhcCCC-CEEEEC-CccchHHHHHHHHHHHhcCCeEE
Confidence 3333 344555 455553 35567888887777777777654
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=77.21 Aligned_cols=74 Identities=16% Similarity=0.315 Sum_probs=55.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--------------CCCC-CcccCCHHHHhcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--------------FPPD-AKVYGSYEALLDDKD 73 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--------------~~~~-~~~~~~~~e~l~~~~ 73 (362)
|||+|||+|.||..++..+.+. +.+|+ ++|+++++.+.+.+... +..+ ....++++++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~-G~~V~-~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL-GHEVT-GVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc-CCeEE-EEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhh--
Confidence 4799999999999999998766 67765 68999998887654110 0001 3456788888764
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
+|+|++++|++.+
T Consensus 77 advvii~vpt~~~ 89 (411)
T TIGR03026 77 ADVIIICVPTPLK 89 (411)
T ss_pred CCEEEEEeCCCCC
Confidence 9999999998764
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-05 Score=83.92 Aligned_cols=109 Identities=11% Similarity=0.119 Sum_probs=82.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
...+||+||+|.||..++..|.+. ++++. ++|+++++++.+.+... ...++..++++. +|+|++++|++..
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~-G~~V~-v~dr~~~~~~~l~~~Ga-----~~~~s~~e~~~~--aDvVi~~V~~~~~ 393 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKS-NFSVC-GYDVYKPTLVRFENAGG-----LAGNSPAEVAKD--VDVLVIMVANEVQ 393 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHcCC-----eecCCHHHHHhc--CCEEEEecCChHH
Confidence 357899999999999999999876 67765 89999999888876532 357899999885 8999999998766
Q ss_pred HHHHH-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH--cCCE
Q 018020 87 VKWAI-------SVAQKKKHLLMEKPMALNVAEFDVILNACEE--NGVQ 126 (362)
Q Consensus 87 ~~~~~-------~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~--~~~~ 126 (362)
.+-+. ..++.| .++++-. +.+++..+++.+.+++ .|..
T Consensus 394 v~~Vl~g~~g~~~~l~~g-~ivVd~S-TvsP~~~~~la~~l~~~g~g~~ 440 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAG-ASIVLSS-TVSPGFVIQLERRLENEGRDIK 440 (1378)
T ss_pred HHHHHhchhhHHhcCCCC-CEEEECC-CCCHHHHHHHHHHHHhhCCCcE
Confidence 54443 223344 4556643 6689999999998887 5533
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=72.71 Aligned_cols=92 Identities=20% Similarity=0.228 Sum_probs=68.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+|+|||+|.||..++..+... +..-+.++++++++++.+++++|.. +..++++.+.+. +.|+|+.+|+.....
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~-g~~~V~v~~r~~~ra~~la~~~g~~--~~~~~~~~~~l~--~aDvVi~at~~~~~~ 252 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAK-GVAEITIANRTYERAEELAKELGGN--AVPLDELLELLN--EADVVISATGAPHYA 252 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHcCCe--EEeHHHHHHHHh--cCCEEEECCCCCchH
Confidence 57899999999999999998774 4555668999999999999998742 222345556665 489999999988775
Q ss_pred HHHHHHHHc---CCeEEEeC
Q 018020 88 KWAISVAQK---KKHLLMEK 104 (362)
Q Consensus 88 ~~~~~al~~---gk~V~~EK 104 (362)
+....+++. +..++++=
T Consensus 253 ~~~~~~~~~~~~~~~~viDl 272 (311)
T cd05213 253 KIVERAMKKRSGKPRLIVDL 272 (311)
T ss_pred HHHHHHHhhCCCCCeEEEEe
Confidence 666665543 24566664
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00061 Score=62.39 Aligned_cols=214 Identities=13% Similarity=0.142 Sum_probs=136.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEE-cCCHHHHHHHHHHcCCCC-----------------CCcc---cCCH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPN-AVLSAVA-SRSLEKATNFAKANNFPP-----------------DAKV---YGSY 65 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~-d~~~~~~~~~~~~~~~~~-----------------~~~~---~~~~ 65 (362)
.|+.|+|. |+||..-+..++++|+ |+|+++. .++.+.+.+.+++|+... ++.+ .+.+
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~~~~v~~G~~~l 81 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLPGTEVLVGEEGL 81 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhccCceEEecHHHH
Confidence 57899995 9999999999999986 8999866 467777777778876321 0111 1334
Q ss_pred HHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
.|+++.+++|.|+.+.--..-..-..+|+++||.|.+---=+ =+....-+.++++++|..+.. -......+-++
T Consensus 82 ~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANKEs-LV~aG~l~~~~~k~~g~~llP-----VDSEH~AifQ~ 155 (385)
T COG0743 82 CELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANKES-LVTAGELVMDAAKESGAQLLP-----VDSEHNAIFQC 155 (385)
T ss_pred HHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceeecchhh-hhcccHHHHHHHHHcCCEEec-----cCchhHHHHHH
Confidence 566677789999999888888888999999999998643211 133445567889999988873 34556677778
Q ss_pred hcCCCCccceEEEEEEeeecCCccc--------------ccCccCcCCCCCC-CcccccccchHHHHHHHHccCCCCcEE
Q 018020 146 VSDPQRFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDG-LGALGDAGWYGIRSILWANDYELPKTV 210 (362)
Q Consensus 146 i~~~g~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~g-gg~l~~~g~h~id~~~~l~g~~~~~~V 210 (362)
+ .....+.|..+-..-+..+...+ ..++|..-+...- .--|.|-|--.|. ..||||. +.+++
T Consensus 156 L-~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIE-A~~LF~~-~~~~I 232 (385)
T COG0743 156 L-QGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIE-AHWLFGL-PYEQI 232 (385)
T ss_pred c-CccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHH-HHHHhCC-CHHHe
Confidence 7 55555667766554433221111 1134543221110 0112232222221 4789985 46777
Q ss_pred EEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 211 IAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 211 ~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
.....+ ....+.+++|.||.+
T Consensus 233 eVvIHP-------QSiIHsmV~~~DGSv 253 (385)
T COG0743 233 EVVIHP-------QSIIHSMVEYVDGSV 253 (385)
T ss_pred eEEEcc-------cchheeeEEeccCCE
Confidence 766322 235678999999865
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.5e-05 Score=67.68 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=62.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----------------CCCcccCCHHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----------------PDAKVYGSYEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~e~l~~~ 72 (362)
|||+|||+|+.|...+-.+.+. +++++ .+|.++++.+.+.+.. .| ....+.+++++.+.+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~-G~~V~-g~D~~~~~v~~l~~g~-~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK-GHQVI-GVDIDEEKVEALNNGE-LPIYEPGLDELLKENVSAGRLRATTDIEEAIKD- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT-TSEEE-EE-S-HHHHHHHHTTS-SSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-
T ss_pred CEEEEECCCcchHHHHHHHHhC-CCEEE-EEeCChHHHHHHhhcc-ccccccchhhhhccccccccchhhhhhhhhhhc-
Confidence 6899999999999999999877 78877 6899998887764321 10 123456777776665
Q ss_pred CCcEEEEcCCCcccH------H-------HHHHHHHcCCeEEEeC--CCCCCHHHHHHHHHHHHHc
Q 018020 73 DIDAVYLPLPTSMHV------K-------WAISVAQKKKHLLMEK--PMALNVAEFDVILNACEEN 123 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~------~-------~~~~al~~gk~V~~EK--P~~~~~~~~~~l~~~a~~~ 123 (362)
.|+++||.|++... . .+...++.|+-|.+|- |.+.+.+-.+.+++.....
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~ 141 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGK 141 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCT
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhccc
Confidence 88888888765421 1 2223344455566665 4444444555555544443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=7.4e-05 Score=67.88 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=67.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCC-cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPN-AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~-~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|||+|.||..++..+.+... .+| .++|+++++.+.+ .+.|+. ....+.+++.+ .|+|++++|+....
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v-~~~d~~~~~~~~~-~~~g~~---~~~~~~~~~~~---aD~Vilavp~~~~~ 72 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKV-YGYDHNELHLKKA-LELGLV---DEIVSFEELKK---CDVIFLAIPVDAII 72 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEE-EEEcCCHHHHHHH-HHCCCC---cccCCHHHHhc---CCEEEEeCcHHHHH
Confidence 479999999999999999986632 354 4689999887765 456642 23457777542 89999999999888
Q ss_pred HHHHHHHH--cCCeEEEeCCCCCCHHHHHH
Q 018020 88 KWAISVAQ--KKKHLLMEKPMALNVAEFDV 115 (362)
Q Consensus 88 ~~~~~al~--~gk~V~~EKP~~~~~~~~~~ 115 (362)
+++..... .| .++++ ++.+.....+
T Consensus 73 ~~~~~l~~l~~~-~iv~d--~gs~k~~i~~ 99 (275)
T PRK08507 73 EILPKLLDIKEN-TTIID--LGSTKAKIIE 99 (275)
T ss_pred HHHHHHhccCCC-CEEEE--CccchHHHHH
Confidence 87776543 33 36665 4554444433
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-05 Score=65.22 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=68.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-|+.|||+|.+|+..+..+... +++-+.+++|+.+++++++++++-. -.+.-++++.+.+.. .|+|+.+||...
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~--~DivI~aT~~~~ 87 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQE--ADIVINATPSGM 87 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHT--ESEEEE-SSTTS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhh--CCeEEEecCCCC
Confidence 356899999999999999999888 6665669999999999999998311 012335666666775 999999999865
Q ss_pred cHHHHHHHHHcCC---eEEEeC
Q 018020 86 HVKWAISVAQKKK---HLLMEK 104 (362)
Q Consensus 86 h~~~~~~al~~gk---~V~~EK 104 (362)
+ .+-...++... .++++=
T Consensus 88 ~-~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 88 P-IITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp T-SSTHHHHTTTCHHCSEEEES
T ss_pred c-ccCHHHHHHHHhhhhceecc
Confidence 5 44455555554 477774
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.9e-05 Score=72.54 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=51.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhc-------------CCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLD-------------DKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~-------------~~~~ 74 (362)
++||+|||+|+||...+..|.+. +++|+ ++|+++++.+.+.. -.++ ..-.++++++. ..+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~-G~~V~-~~D~~~~~v~~l~~-g~~~---~~e~~l~~~l~~~~~~g~l~~~~~~~~a 76 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR-QKQVI-GVDINQHAVDTINR-GEIH---IVEPDLDMVVKTAVEGGYLRATTTPEPA 76 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC-CCEEE-EEeCCHHHHHHHHC-CCCC---cCCCCHHHHHHHHhhcCceeeecccccC
Confidence 58999999999999999999877 67766 68999998887532 2222 12344555432 1268
Q ss_pred cEEEEcCCCc
Q 018020 75 DAVYLPLPTS 84 (362)
Q Consensus 75 D~V~i~~~~~ 84 (362)
|+|++|+|++
T Consensus 77 Dvvii~vptp 86 (415)
T PRK11064 77 DAFLIAVPTP 86 (415)
T ss_pred CEEEEEcCCC
Confidence 9999999986
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.4e-05 Score=71.35 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=65.6
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCC---C-cccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPD---A-KVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~---~-~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
++||+|||+ |..|...++.|..||++++. .+..++.+-+.+.+.+---.+ . -..-|.+++ ...++|+|+.|+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~-~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~-~~~~~DvvFlalP 79 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELI-LISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI-ELDECDVVFLALP 79 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEE-EeechhhcCCchHHhCcccccccccccccCChhhh-hcccCCEEEEecC
Confidence 699999997 88899999999999999955 444433344555555410000 0 011233444 3446999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+..-.+++...++.|..|+
T Consensus 80 hg~s~~~v~~l~~~g~~VI 98 (349)
T COG0002 80 HGVSAELVPELLEAGCKVI 98 (349)
T ss_pred chhHHHHHHHHHhCCCeEE
Confidence 9999999999999998765
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.2e-05 Score=80.72 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=85.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--|||+||+|.||..++..|.+. ++++. ++|+++++++.+++. | +..++|..|+.+. +|+|+++.|+..+.
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~-G~~v~-v~dr~~~~~~~l~~~-G----a~~~~s~~e~a~~--advVi~~l~~~~~v 74 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRS-GFKVQ-AFEISTPLMEKFCEL-G----GHRCDSPAEAAKD--AAALVVVLSHPDQV 74 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHHc-C----CeecCCHHHHHhc--CCEEEEEcCChHHH
Confidence 45799999999999999999877 67765 899999999998764 3 3578999999986 89999999999876
Q ss_pred HHHH----HHHH---cCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 88 KWAI----SVAQ---KKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 88 ~~~~----~al~---~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+-+. .++. .| .++++-- +.+++..+++.+.+++.|
T Consensus 75 ~~V~~g~~g~~~~l~~g-~iivd~S-Ti~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKG-AVILIRS-TILPLQLQKLEKKLTERK 116 (1378)
T ss_pred HHHHhchhhHHhcCCCc-CEEEECC-CCCHHHHHHHHHHHHhcC
Confidence 6664 1232 33 5777744 678999999999988877
|
|
| >PLN02358 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.2e-05 Score=70.80 Aligned_cols=99 Identities=22% Similarity=0.184 Sum_probs=69.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHH---HcCCCCC--Ccc-----------------c
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAK---ANNFPPD--AKV-----------------Y 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~---~~~~~~~--~~~-----------------~ 62 (362)
+++||||+|+|.||+.|++.+.+.|++++++|+|++ .+....+-+ .+|.-++ +.. .
T Consensus 4 ~~lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~~~ 83 (338)
T PLN02358 4 KKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGI 83 (338)
T ss_pred CceEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEEEc
Confidence 369999999999999999998888999999999964 343333211 0121111 110 0
Q ss_pred CCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 63 GSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 63 ~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
.+.+++ ..+.++|+|+-||......+.+...+++| |-|++--|
T Consensus 84 ~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap 128 (338)
T PLN02358 84 RNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP 128 (338)
T ss_pred CCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC
Confidence 112222 22247999999999999999999999999 66666555
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0001 Score=71.24 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=66.2
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+||| +|.||...+..+++. +.++. +++++++++...+.++|+ ...++.++.+.. .|+|++++|+....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~-G~~V~-v~~r~~~~~~~~a~~~gv----~~~~~~~e~~~~--aDvVIlavp~~~~~ 72 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK-GFEVI-VTGRDPKKGKEVAKELGV----EYANDNIDAAKD--ADIVIISVPINVTE 72 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC-CCEEE-EEECChHHHHHHHHHcCC----eeccCHHHHhcc--CCEEEEecCHHHHH
Confidence 4799998 899999999999876 56654 678998887788888875 356788888775 89999999998766
Q ss_pred HHHHHHHHc--CCeEEEe
Q 018020 88 KWAISVAQK--KKHLLME 103 (362)
Q Consensus 88 ~~~~~al~~--gk~V~~E 103 (362)
+++...... ...++++
T Consensus 73 ~vl~~l~~~l~~~~iViD 90 (437)
T PRK08655 73 DVIKEVAPHVKEGSLLMD 90 (437)
T ss_pred HHHHHHHhhCCCCCEEEE
Confidence 666655432 2246665
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.98 E-value=8e-05 Score=75.56 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=64.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||+|||+|.||..++..+++. +.+|++ +|++..+ ..+.++|+ ..+.++++++.. +.|+|++|+|+..-
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~-G~~V~~-~dr~~~~--~~A~~~Gv----~~~~d~~e~~~~-~aDvViLavP~~~~ 121 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQ-GHTVLA-HSRSDHS--LAARSLGV----SFFLDPHDLCER-HPDVILLCTSIIST 121 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-CCEEEE-EeCCHHH--HHHHHcCC----EEeCCHHHHhhc-CCCEEEEcCCHHHH
Confidence 468999999999999999999877 578764 6777543 34666775 467889997653 58999999998766
Q ss_pred HHHHHHHH-Hc-C-CeEEEe
Q 018020 87 VKWAISVA-QK-K-KHLLME 103 (362)
Q Consensus 87 ~~~~~~al-~~-g-k~V~~E 103 (362)
.+++.... .. . ..++++
T Consensus 122 ~~vl~~l~~~~l~~g~iVvD 141 (667)
T PLN02712 122 ENVLKSLPLQRLKRNTLFVD 141 (667)
T ss_pred HHHHHhhhhhcCCCCeEEEE
Confidence 66665532 11 1 246766
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.5e-05 Score=71.51 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=51.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-------------CCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-------------DAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~e~l~~~~ 73 (362)
.+|||++||+|+||..++..+.+ +++|+ ++|+++++.+.+.+ |..+ ...+.++. +.++ +
T Consensus 5 ~~mkI~vIGlGyvGlpmA~~la~--~~~V~-g~D~~~~~ve~l~~--G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~--~ 76 (425)
T PRK15182 5 DEVKIAIIGLGYVGLPLAVEFGK--SRQVV-GFDVNKKRILELKN--GVDVNLETTEEELREARYLKFTSEI-EKIK--E 76 (425)
T ss_pred CCCeEEEECcCcchHHHHHHHhc--CCEEE-EEeCCHHHHHHHHC--cCCCCCCCCHHHHHhhCCeeEEeCH-HHHc--C
Confidence 36899999999999999888765 37866 69999999988872 2211 01223344 4455 4
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
.|++++|.|++.+
T Consensus 77 advvii~Vptp~~ 89 (425)
T PRK15182 77 CNFYIITVPTPIN 89 (425)
T ss_pred CCEEEEEcCCCCC
Confidence 8999998887743
|
|
| >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00011 Score=59.95 Aligned_cols=98 Identities=19% Similarity=0.192 Sum_probs=67.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHH---HcCCCCCCccc-----------------CCHHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAK---ANNFPPDAKVY-----------------GSYEA 67 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~---~~~~~~~~~~~-----------------~~~~e 67 (362)
+||+|+|+|.||+.+++.+...+++++++++|+ +++....+.+ .+|..+....+ .++.+
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~ 80 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPAN 80 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHH
Confidence 589999999999999999988899999999995 6665555433 23322110000 22233
Q ss_pred H-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 68 L-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 68 ~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+ ..+.++|+|+=||.-....+-+..=+++| |.|++--|.
T Consensus 81 ~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~ 121 (149)
T smart00846 81 LPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA 121 (149)
T ss_pred CcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC
Confidence 3 13346799998887777777777788888 888887663
|
GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. |
| >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0025 Score=59.48 Aligned_cols=209 Identities=12% Similarity=0.100 Sum_probs=129.9
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEEc-CCHHHHHHHHHHcCCCC---------------------CCcccC-
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPN-AVLSAVAS-RSLEKATNFAKANNFPP---------------------DAKVYG- 63 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~d-~~~~~~~~~~~~~~~~~---------------------~~~~~~- 63 (362)
.||+|+|. |++|..-+..++++|+ ++|++++- .+.+.+.+.+++|+... +++++.
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G 81 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLVG 81 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEEC
Confidence 37999995 9999999999988875 99999774 56667777777775210 011221
Q ss_pred --CHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 64 --SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 64 --~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
.+.++.+.+++|.|+.+.--..-......|+++||.|.+--- .+ +....-+.+.+++++..+.. -.....
T Consensus 82 ~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANK--EsLV~aG~li~~~a~~~~~~I~P-----VDSEHs 154 (389)
T TIGR00243 82 EEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANK--ESLVTAGHLFLDAVKKYGVQLLP-----VDSEHN 154 (389)
T ss_pred HHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEech--hHHHhhHHHHHHHHHHcCCeEEe-----ecchHh
Confidence 233445556799999999999999999999999999886422 23 33344456788888876653 344556
Q ss_pred HHHHhhcCCC-CccceEEEEEEeeecCCccc--------------ccCccCcCCCCCCCcccccccc---hHHHH--HHH
Q 018020 141 QMKEFVSDPQ-RFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDGLGALGDAGW---YGIRS--ILW 200 (362)
Q Consensus 141 ~~k~~i~~~g-~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~ggg~l~~~g~---h~id~--~~~ 200 (362)
.+-+++ .+| ...+|..+-..-+..+...+ ..++|..-+ .+-.|-.+ -.+.+ ..|
T Consensus 155 AIfQ~L-~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~-----KITIDSATmmNKglEvIEA~~ 228 (389)
T TIGR00243 155 AIFQSL-QHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGR-----KITIDSATMMNKGLEYIEARW 228 (389)
T ss_pred HHHHHc-ccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCC-----eeeeehHhhhhhhHHHHHHHH
Confidence 677777 423 22346655554433221110 113343321 23233211 11223 478
Q ss_pred HccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 201 ANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 201 l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
|||. ++.++.....+ ....+.+++|.||.+
T Consensus 229 LF~~-~~d~I~vvIHp-------qSiIHsmVef~DGSv 258 (389)
T TIGR00243 229 LFGA-SAEQIDVLIHP-------QSIIHSMVEFQDGSV 258 (389)
T ss_pred HcCC-CHHHeEEEECC-------CCceeEEEEEcCccE
Confidence 8985 36777777322 236788999999976
|
1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.9e-05 Score=70.07 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=58.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+..+|+|||+|.||..++..|+.. +++++. +++..++....+++.|+. . .|.+++++. .|+|++++|+..+
T Consensus 16 ~gktIgIIG~GsmG~AlA~~L~~s-G~~Vvv-~~r~~~~s~~~A~~~G~~----~-~s~~eaa~~--ADVVvLaVPd~~~ 86 (330)
T PRK05479 16 KGKKVAIIGYGSQGHAHALNLRDS-GVDVVV-GLREGSKSWKKAEADGFE----V-LTVAEAAKW--ADVIMILLPDEVQ 86 (330)
T ss_pred CCCEEEEEeeHHHHHHHHHHHHHC-CCEEEE-EECCchhhHHHHHHCCCe----e-CCHHHHHhc--CCEEEEcCCHHHH
Confidence 346899999999999999999876 677764 455544555556667753 3 388999886 8999999999988
Q ss_pred HHHH
Q 018020 87 VKWA 90 (362)
Q Consensus 87 ~~~~ 90 (362)
..++
T Consensus 87 ~~V~ 90 (330)
T PRK05479 87 AEVY 90 (330)
T ss_pred HHHH
Confidence 7776
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.4e-05 Score=59.71 Aligned_cols=100 Identities=18% Similarity=0.285 Sum_probs=70.3
Q ss_pred EEEEEec----cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGA----ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~----G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+|+|||+ +..|...+..+++. ++++..|-.+. . +-.| ..+|.+++| . -..+|++++++|+..
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~-G~~v~~Vnp~~-~------~i~G----~~~y~sl~e-~-p~~iDlavv~~~~~~ 67 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAA-GYEVYPVNPKG-G------EILG----IKCYPSLAE-I-PEPIDLAVVCVPPDK 67 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHT-T-EEEEESTTC-S------EETT----EE-BSSGGG-C-SST-SEEEE-S-HHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhC-CCEEEEECCCc-e------EECc----EEeeccccC-C-CCCCCEEEEEcCHHH
Confidence 5899995 56788889998884 78877664332 1 1123 368999999 3 347999999999999
Q ss_pred cHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 86 HVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
-.+++.+|.+.| +.|++..- ..-+++.+.|+++|+.+.
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g-----~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG-----AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT-----S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHcCCCEEEEEcc-----hHHHHHHHHHHHcCCEEE
Confidence 999999999999 77777532 677788999999999876
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.6e-05 Score=70.59 Aligned_cols=117 Identities=17% Similarity=0.108 Sum_probs=83.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.-+++|||+|..|..|+..+.....++=+-|++|+++++++|++++.- ...+...+|.++.+.. .|+|+-+|+...
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~--aDIV~taT~s~~ 194 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD--ADTITSITNSDT 194 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEecCCCC
Confidence 467999999999999999998887788888999999999998877531 1124567999999975 999999998653
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+-+-..-++.|.||.. ++.+..+.+|+-...-+....+++.
T Consensus 195 -P~~~~~~l~pg~hV~a---iGs~~p~~~El~~~~l~~a~~v~vD 235 (301)
T PRK06407 195 -PIFNRKYLGDEYHVNL---AGSNYPNRREAEHSVLNDADIVVTE 235 (301)
T ss_pred -cEecHHHcCCCceEEe---cCCCCCCcccCCHHHHHhCCEEEEC
Confidence 2222456788999886 4444444444443332223334444
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.9e-05 Score=67.84 Aligned_cols=87 Identities=17% Similarity=0.226 Sum_probs=61.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||+|||+|.||...+..+.+. +.+|. ++|+++++.+.+.+...+. ...++. +.+. +.|+|++|+|+....+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~-g~~V~-~~d~~~~~~~~a~~~g~~~---~~~~~~-~~~~--~aDlVilavp~~~~~~ 72 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL-GHTVY-GVSRRESTCERAIERGLVD---EASTDL-SLLK--DCDLVILALPIGLLLP 72 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHCCCcc---cccCCH-hHhc--CCCEEEEcCCHHHHHH
Confidence 4799999999999999999876 56654 7899988877765543221 223444 4454 5999999999988777
Q ss_pred HHHHHHHc--CCeEEEe
Q 018020 89 WAISVAQK--KKHLLME 103 (362)
Q Consensus 89 ~~~~al~~--gk~V~~E 103 (362)
++...... ...++++
T Consensus 73 ~~~~l~~~l~~~~ii~d 89 (279)
T PRK07417 73 PSEQLIPALPPEAIVTD 89 (279)
T ss_pred HHHHHHHhCCCCcEEEe
Confidence 76655543 2345554
|
|
| >PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00021 Score=56.45 Aligned_cols=92 Identities=18% Similarity=0.280 Sum_probs=68.2
Q ss_pred EEEEec-cHHHHHHHHHHhcCC-CcEEEEEE-cCCHHHHHHHHHHcCCC---------------------CCCcccCC--
Q 018020 11 FGIIGA-ADIARKLSRAITLAP-NAVLSAVA-SRSLEKATNFAKANNFP---------------------PDAKVYGS-- 64 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~-~~~vv~v~-d~~~~~~~~~~~~~~~~---------------------~~~~~~~~-- 64 (362)
|.|+|+ |++|+.-+..++++| .++|+++. .++.+.+.+.+++|+.+ ++++++..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 679995 999999999999998 59999965 45667777777777532 01222222
Q ss_pred -HHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 65 -YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 65 -~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
+.++.+.+++|.|+.+..-..-..-...|+++||.|.+
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL 119 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL 119 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence 33566667999999999999999999999999999875
|
In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A .... |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.3e-05 Score=69.43 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=84.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc---CCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN---NFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.-+++|||+|..|..|+..+.....++-+-|++|+++++++|++.. +++ +...+|.++.+.. .|+|+-+|+..
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~--v~~~~~~~~av~~--ADIV~taT~s~ 203 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFA--VNTTLDAAEVAHA--ANLIVTTTPSR 203 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCc--EEEECCHHHHhcC--CCEEEEecCCC
Confidence 4679999999999999999887777888889999999999988765 332 3457899999975 99999998865
Q ss_pred ccHHHH-HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 85 MHVKWA-ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 85 ~h~~~~-~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
. +++ .+-++.|.||.. ++.+..+.+|+-...-+....+.+.
T Consensus 204 ~--P~~~~~~l~~G~hi~~---iGs~~p~~~Eld~~~l~~a~~vvvD 245 (315)
T PRK06823 204 E--PLLQAEDIQPGTHITA---VGADSPGKQELDAELVARADKILVD 245 (315)
T ss_pred C--ceeCHHHcCCCcEEEe---cCCCCcccccCCHHHHhhCCEEEEC
Confidence 3 333 457789999985 6666666666654443333334444
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=9.8e-05 Score=68.70 Aligned_cols=78 Identities=14% Similarity=0.258 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC---------CCCCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF---------PPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||+|||+|.||..++..+.+. +.++ .+++++++..+.+.++... +.+....++.++.++. +|+|++
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~-g~~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D~vi~ 77 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARN-GHDV-TLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD--ADLILV 77 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEE-EEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC--CCEEEE
Confidence 5899999999999999998766 5665 5889999888887765210 1123456788888764 899999
Q ss_pred cCCCcccHHHH
Q 018020 80 PLPTSMHVKWA 90 (362)
Q Consensus 80 ~~~~~~h~~~~ 90 (362)
++|+..-.+++
T Consensus 78 ~v~~~~~~~v~ 88 (325)
T PRK00094 78 AVPSQALREVL 88 (325)
T ss_pred eCCHHHHHHHH
Confidence 99996433333
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00012 Score=67.41 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=55.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..||+|||+|.||..++..|++. +++++...+++.++.+.+. +.|+ .+ .+..++++. .|+|++++|+..+.
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~s-G~~Viv~~~~~~~~~~~a~-~~Gv----~~-~s~~ea~~~--ADiVvLaVpp~~~~ 73 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDS-GLNVIVGLRKGGASWKKAT-EDGF----KV-GTVEEAIPQ--ADLIMNLLPDEVQH 73 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-CCeEEEEECcChhhHHHHH-HCCC----EE-CCHHHHHhc--CCEEEEeCCcHhHH
Confidence 46799999999999999999876 5677655666555555544 5565 23 357887764 89999999998565
Q ss_pred HHHHH
Q 018020 88 KWAIS 92 (362)
Q Consensus 88 ~~~~~ 92 (362)
..+..
T Consensus 74 ~~v~~ 78 (314)
T TIGR00465 74 EVYEA 78 (314)
T ss_pred HHHHH
Confidence 55544
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.4e-05 Score=60.92 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=60.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-+|+|||+|+.|..|+.+|++. +++|+ |..+..++..+.+++-|+. ..+..|..+. .|+|++.+|+..|.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDS-G~~V~-Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~--aDvV~~L~PD~~q~ 74 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDS-GVNVI-VGLREGSASWEKAKADGFE-----VMSVAEAVKK--ADVVMLLLPDEVQP 74 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHC-C-EEE-EEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC---SEEEE-S-HHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhC-CCCEE-EEecCCCcCHHHHHHCCCe-----eccHHHHHhh--CCEEEEeCChHHHH
Confidence 35799999999999999999988 77766 4445444455556677763 3588888886 99999999999997
Q ss_pred HHH----HHHHHcCCeEEEeCCC
Q 018020 88 KWA----ISVAQKKKHLLMEKPM 106 (362)
Q Consensus 88 ~~~----~~al~~gk~V~~EKP~ 106 (362)
++- ..-|+.|+.+..--.+
T Consensus 75 ~vy~~~I~p~l~~G~~L~fahGf 97 (165)
T PF07991_consen 75 EVYEEEIAPNLKPGATLVFAHGF 97 (165)
T ss_dssp HHHHHHHHHHS-TT-EEEESSSH
T ss_pred HHHHHHHHhhCCCCCEEEeCCcc
Confidence 765 4466777766654443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.004 Score=58.08 Aligned_cols=205 Identities=13% Similarity=0.111 Sum_probs=127.7
Q ss_pred EEe-ccHHHHHHHHHHhcCCC-cEEEEEEc-CCHHHHHHHHHHcCCCC-------------------CCccc---CCHHH
Q 018020 13 IIG-AADIARKLSRAITLAPN-AVLSAVAS-RSLEKATNFAKANNFPP-------------------DAKVY---GSYEA 67 (362)
Q Consensus 13 iiG-~G~~g~~~~~~~~~~~~-~~vv~v~d-~~~~~~~~~~~~~~~~~-------------------~~~~~---~~~~e 67 (362)
|+| +|++|..-+..++++|+ ++|+++.- ++.+.+.+.+++|+... ++.++ +.+.+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l~~ 80 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGLIA 80 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHHHH
Confidence 456 49999999999988865 99999764 56677777777775210 01111 12335
Q ss_pred HhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 68 ~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
+++.+++|.|+.+..-..-......|+++||.|.+--- .+ +....-+.+.+++++..+.. -......+-|++
T Consensus 81 l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANK--ESLV~aG~li~~~~~~~~~~iiP-----VDSEHsAIfQ~L 153 (383)
T PRK12464 81 VATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANK--ETLVAAGHIVTDLAKQNGCRLIP-----VDSEHSAIFQCL 153 (383)
T ss_pred HHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEech--hhHhhhHHHHHHHHHHcCCeEEe-----echhHHHHHHHc
Confidence 55667899999999999999999999999999886422 13 34445566788888876653 345556677777
Q ss_pred cCCCCccceEEEEEEeeecCCccc--------------ccCccCcCCCCCCCcccccccc---hHHHH--HHHHccCCCC
Q 018020 147 SDPQRFGQLRTMHSCFSFAGDAEF--------------LKNDIRVKPDLDGLGALGDAGW---YGIRS--ILWANDYELP 207 (362)
Q Consensus 147 ~~~g~iG~i~~i~~~~~~~~~~~~--------------~~~~w~~~~~~~ggg~l~~~g~---h~id~--~~~l~g~~~~ 207 (362)
..+...+|..+...-+..+...+ ..++|..-+ .+-.|-.+ -.+.+ ..|||+. ++
T Consensus 154 -~~~~~~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~-----KITIDSATmmNKglEvIEA~~LF~i-~~ 226 (383)
T PRK12464 154 -NGENNKEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGA-----KLTIDSATLMNKGFEVIEAHWLFDI-PY 226 (383)
T ss_pred -cCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCC-----eeeeehHhhhhhhHHHHHHHHHcCC-CH
Confidence 43333346665555443221110 113444321 23223211 11222 4788985 36
Q ss_pred cEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 208 KTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 208 ~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
+++.....+ ....+.+++|.||.+
T Consensus 227 d~I~vvIHP-------qSiVHsmVef~DGSv 250 (383)
T PRK12464 227 EKIDVLIHK-------ESIIHSLVEFIDGSV 250 (383)
T ss_pred HHeEEEECC-------CCceeEEEEEcCccE
Confidence 777777422 236788999999976
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00022 Score=67.83 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=49.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CC-----CCCcc--cCCHHHHhcCCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FP-----PDAKV--YGSYEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~-----~~~~~--~~~~~e~l~~~~~D 75 (362)
|||+|||+|.||...+..+. . +++|+ ++|+++++.+.+.+..- +. ...++ ..+..+.++ +.|
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~-G~~Vi-gvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~--~ad 75 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q-NHEVV-ALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYR--DAD 75 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h-CCcEE-EEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhc--CCC
Confidence 47999999999999886665 4 67766 78999999887765110 00 00122 233556655 489
Q ss_pred EEEEcCCCc
Q 018020 76 AVYLPLPTS 84 (362)
Q Consensus 76 ~V~i~~~~~ 84 (362)
+|++++|++
T Consensus 76 ~vii~Vpt~ 84 (388)
T PRK15057 76 YVIIATPTD 84 (388)
T ss_pred EEEEeCCCC
Confidence 999999977
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00012 Score=66.74 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=61.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.||+|+|+ |+.|...++.|.+||+++++.+.++.. +. -.+.++++++ +|+|+.++|+....
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------~~-------~~~~~~~~~~--~D~vFlalp~~~s~ 63 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------KD-------AAERAKLLNA--ADVAILCLPDDAAR 63 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------cC-------cCCHhHhhcC--CCEEEECCCHHHHH
Confidence 48999997 888999999999999999999987642 11 1245566664 99999999999999
Q ss_pred HHHHHHHHcCCeEE
Q 018020 88 KWAISVAQKKKHLL 101 (362)
Q Consensus 88 ~~~~~al~~gk~V~ 101 (362)
+++..+.++|..|+
T Consensus 64 ~~~~~~~~~g~~VI 77 (310)
T TIGR01851 64 EAVSLVDNPNTCII 77 (310)
T ss_pred HHHHHHHhCCCEEE
Confidence 99999988887665
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.2e-05 Score=67.68 Aligned_cols=126 Identities=17% Similarity=0.181 Sum_probs=82.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|+|+|.+|+..+..+... ++.-+.|++|+.+++++++++++....+.+..+..+.+. +.|+|+.+||...+.
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~--~~DivInaTp~g~~~ 199 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDL-GVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELA--DFDLIINATSAGMSG 199 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccc--cCCEEEECCcCCCCC
Confidence 34799999999999999999877 433355899999999999988752110111112334443 599999999987764
Q ss_pred -----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 88 -----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 88 -----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
++....+..+..| +| +..++.+ ..+++.|++.|+.+.-|...-.+....
T Consensus 200 ~~~~~~~~~~~l~~~~~v-~D--ivY~P~~-T~ll~~A~~~G~~~~~G~~Ml~~Qa~~ 253 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIV-YD--MIYGPLP-TPFLAWAKAQGARTIDGLGMLVHQAAE 253 (278)
T ss_pred CCCCCCCCHHHcCCCCEE-EE--eecCCCC-CHHHHHHHHCcCeecCCHHHHHHHHHH
Confidence 2334555555443 33 2333322 567788999999888775554433333
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00055 Score=58.98 Aligned_cols=109 Identities=15% Similarity=0.056 Sum_probs=74.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc-c
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS-M 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-~ 85 (362)
+.++|+|+|+|.+|...+..|.+. +.+|+ ++|+++++++.+++.++. ... +.++++.. ++|+++-+.... .
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~-G~~Vv-v~D~~~~~~~~~~~~~g~----~~v-~~~~l~~~-~~Dv~vp~A~~~~I 98 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEE-GAKLI-VADINEEAVARAAELFGA----TVV-APEEIYSV-DADVFAPCALGGVI 98 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHHcCC----EEE-cchhhccc-cCCEEEeccccccc
Confidence 347899999999999999999877 78888 899999999988888763 333 44677764 699999665543 3
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCH-HHHHHHHHHHHHcCCEEEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNV-AEFDVILNACEENGVQLMD 129 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~-~~~~~l~~~a~~~~~~~~v 129 (362)
..+.+ +.+ +..+++|.--.... .++ .+..++.|+.+..
T Consensus 99 ~~~~~-~~l--~~~~v~~~AN~~~~~~~~---~~~L~~~Gi~~~P 137 (200)
T cd01075 99 NDDTI-PQL--KAKAIAGAANNQLADPRH---GQMLHERGILYAP 137 (200)
T ss_pred CHHHH-HHc--CCCEEEECCcCccCCHhH---HHHHHHCCCEEeC
Confidence 33333 333 45678887322222 333 3445677877654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.76 E-value=9.5e-05 Score=67.38 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=79.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-+++|||+|.+|+..+..++.. +++|. +++|++++...+. +.+.. ...++++++++. +.|+|++++|...-.
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~-v~~R~~~~~~~~~-~~g~~--~~~~~~l~~~l~--~aDiVint~P~~ii~ 223 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-GARVF-VGARSSADLARIT-EMGLI--PFPLNKLEEKVA--EIDIVINTIPALVLT 223 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHH-HCCCe--eecHHHHHHHhc--cCCEEEECCChHHhC
Confidence 35899999999999999999887 57755 8899987765543 44432 122456777776 499999999876432
Q ss_pred HHHHHHHHcCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCEEE--EeeecccChhH
Q 018020 88 KWAISVAQKKKHLLME---KPMALNVAEFDVILNACEENGVQLM--DGTMWVHNPRT 139 (362)
Q Consensus 88 ~~~~~al~~gk~V~~E---KP~~~~~~~~~~l~~~a~~~~~~~~--v~~~~r~~p~~ 139 (362)
.-....++.+ .++++ +|..++. +.|++.|++.. .|.+-++.|..
T Consensus 224 ~~~l~~~k~~-aliIDlas~Pg~tdf-------~~Ak~~G~~a~~~~glPg~~ap~t 272 (287)
T TIGR02853 224 ADVLSKLPKH-AVIIDLASKPGGTDF-------EYAKKRGIKALLAPGLPGIVAPKT 272 (287)
T ss_pred HHHHhcCCCC-eEEEEeCcCCCCCCH-------HHHHHCCCEEEEeCCCCcccCchh
Confidence 3233444444 34544 4655554 46788887766 66777887754
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=8.5e-05 Score=68.04 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=61.7
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||+|||+ |..|...++.|.+||.++++++..+... . . .+.+++++ ++|+|+.|+|+...
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~------~-~~~~~~~~--~~DvvFlalp~~~s 63 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------D------A-AARRELLN--AADVAILCLPDDAA 63 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------c------c-cCchhhhc--CCCEEEECCCHHHH
Confidence 689999996 8889999999999999999999865322 1 1 22334444 49999999999999
Q ss_pred HHHHHHHHHcCCeEE
Q 018020 87 VKWAISVAQKKKHLL 101 (362)
Q Consensus 87 ~~~~~~al~~gk~V~ 101 (362)
.+++.++.++|..|+
T Consensus 64 ~~~~~~~~~~g~~VI 78 (313)
T PRK11863 64 REAVALIDNPATRVI 78 (313)
T ss_pred HHHHHHHHhCCCEEE
Confidence 999999999988665
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=65.77 Aligned_cols=130 Identities=13% Similarity=0.113 Sum_probs=77.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
..++.|||+|.+|+..+..+... ++.-+.|++|+.+++++++++++....+....+.+++-.. .+.|+|+.+||....
T Consensus 125 ~k~vlvlGaGGaarai~~aL~~~-G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 125 GFRGLVIGAGGTSRAAVYALASL-GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred CceEEEEcCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 35899999999999988888877 5555668999999999999887531111223333333111 359999999997643
Q ss_pred HHHHHHH-----HH----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHH
Q 018020 87 VKWAISV-----AQ----KKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQ 141 (362)
Q Consensus 87 ~~~~~~a-----l~----~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~ 141 (362)
....... +. ....++.| +..++.+ ..+++.|++.|.+..-|...........
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~ 264 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLD--AAYDPWP-TPLVAIVSAAGWRVISGLQMLLHQGFAQ 264 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEE--EeeCCCC-CHHHHHHHHCCCEEECcHHHHHHHHHHH
Confidence 2211100 00 12233333 2222222 4566677777777776655444333333
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.75 E-value=9.8e-05 Score=68.85 Aligned_cols=104 Identities=8% Similarity=0.004 Sum_probs=77.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.-+++|||+|..|..|+..+.....++=+-|++|+++++++|+++..-. -.+...+|.++.+.. .|+|+-+|+....
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~--ADIIvtaT~S~~~ 206 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEG--ADIITTVTADKTN 206 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc--CCEEEEecCCCCC
Confidence 4678999999999999988876666777889999999999998876411 124557999999986 9999999986543
Q ss_pred HHHHH-HHHHcCCeEEEeCCCCCCHHHHHHH
Q 018020 87 VKWAI-SVAQKKKHLLMEKPMALNVAEFDVI 116 (362)
Q Consensus 87 ~~~~~-~al~~gk~V~~EKP~~~~~~~~~~l 116 (362)
.+++. +.++.|.||.+ ++.+....+|+
T Consensus 207 ~Pvl~~~~lkpG~hV~a---IGs~~p~~~El 234 (346)
T PRK07589 207 ATILTDDMVEPGMHINA---VGGDCPGKTEL 234 (346)
T ss_pred CceecHHHcCCCcEEEe---cCCCCCCcccC
Confidence 34343 57799999986 44444444444
|
|
| >PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=59.52 Aligned_cols=99 Identities=18% Similarity=0.117 Sum_probs=71.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHHHcCCCCC-------------------Cc--ccCCH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAKANNFPPD-------------------AK--VYGSY 65 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~~~~~~~~-------------------~~--~~~~~ 65 (362)
|||||-|+|.||+..++.+...++++|++|.|+. .+....+ -+|....+ +. -..++
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~L-lkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~dp 79 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYL-LKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEERDP 79 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHH-HHEETTTESGSSHEEEETTEEEETTEEEEEEHTSSG
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhh-hhccccccceecccccccceeEeecccccchhhhhh
Confidence 6999999999999999999999999999999987 4444433 33432110 00 01122
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMAL 108 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~~ 108 (362)
+++ ..+.++|+|+=||+.....+-+..-+++| |.|++--|...
T Consensus 80 ~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~~ 124 (151)
T PF00044_consen 80 EEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSKD 124 (151)
T ss_dssp GGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-SS
T ss_pred cccccccccccEEEeccccceecccccccccccccceeecccccc
Confidence 222 11236899999999999999999999999 89998777544
|
The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O .... |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0004 Score=62.95 Aligned_cols=121 Identities=10% Similarity=0.127 Sum_probs=87.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++-||.+.|. |.+|..+.+.+..- ++++++-+.+..-. + +-+|+ ++|.|++|+-+..++|+++|++|...
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~-g~~~v~~V~p~~~~-~---~v~G~----~~y~sv~dlp~~~~~Dlavi~vpa~~ 75 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAY-GTNIVGGVTPGKGG-T---TVLGL----PVFDSVKEAVEETGANASVIFVPAPF 75 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhC-CCCEEEEECCCCCc-c---eecCe----eccCCHHHHhhccCCCEEEEecCHHH
Confidence 4678999995 88899999999766 55566666655101 1 22455 59999999987545899999999999
Q ss_pred cHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccCh
Q 018020 86 HVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNP 137 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p 137 (362)
-.+.+.+|.++| |.+++--. .....+.++|.+.|+++|+.+. .++.--++|
T Consensus 76 v~~~l~e~~~~Gvk~avIis~-Gf~e~~~~~l~~~a~~~girilGPNc~Giin~ 128 (286)
T TIGR01019 76 AADAIFEAIDAGIELIVCITE-GIPVHDMLKVKRYMEESGTRLIGPNCPGIITP 128 (286)
T ss_pred HHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHcCCEEECCCCceEEcc
Confidence 999999999999 56555222 2234456899999999998875 333333444
|
ATP citrate lyases appear to form an outgroup. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00017 Score=64.88 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=63.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCC---cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPN---AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~---~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.|||+|||+|.||...+..+.+... -++ .++++++++. +. ....+.+++++ ++|+|++++|+.
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i-~~~~~~~~~~-------~~----~~~~~~~~~~~--~~D~Vilavkp~ 68 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENI-YYHTPSKKNT-------PF----VYLQSNEELAK--TCDIIVLAVKPD 68 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceE-EEECCChhcC-------Ce----EEeCChHHHHH--hCCEEEEEeCHH
Confidence 6899999999999999998876532 234 4677776431 21 34567788876 489999999998
Q ss_pred ccHHHHHHHHH--cCCeEEEeCCCCCCHHHHHHHH
Q 018020 85 MHVKWAISVAQ--KKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 85 ~h~~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
.-.+++..... .++.|++.-. +.+.+..+++.
T Consensus 69 ~~~~vl~~i~~~l~~~~iIS~~a-Gi~~~~l~~~~ 102 (260)
T PTZ00431 69 LAGKVLLEIKPYLGSKLLISICG-GLNLKTLEEMV 102 (260)
T ss_pred HHHHHHHHHHhhccCCEEEEEeC-CccHHHHHHHc
Confidence 77777665442 2355555422 44555555443
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=66.13 Aligned_cols=95 Identities=15% Similarity=0.310 Sum_probs=67.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-C--------CCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-N--------FPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~--------~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||+|||+|.||..++..|.+. +.+|. +++++++..+.+.+.. + +++.+..+++.++.+.. +.|+|++
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~-g~~V~-l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK-KISVN-LWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSD-NATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCeEE-EEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhC-CCCEEEE
Confidence 4799999999999999988766 56665 8899988888776532 1 11233456778777642 5899999
Q ss_pred cCCCcccHHHHHHHHH-c---CCeE-EEeCCC
Q 018020 80 PLPTSMHVKWAISVAQ-K---KKHL-LMEKPM 106 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~-~---gk~V-~~EKP~ 106 (362)
++|+....+.+..... . ...| .+-|-+
T Consensus 78 avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 78 AVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 9999988887776654 2 2333 455555
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00039 Score=63.20 Aligned_cols=116 Identities=7% Similarity=0.075 Sum_probs=85.9
Q ss_pred CCccCCceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 1 MATESQAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
|++--.++-||.|.|. |.+|...++.+.+. +++.+.-+.+. .+ +-.|+ ++|.|++++-+..++|++
T Consensus 1 ~~~~~~~~~~~~v~~~~~~~g~~~l~~l~~~-g~~~v~pVnp~~~~~------~v~G~----~~y~sv~dlp~~~~~DlA 69 (291)
T PRK05678 1 MSILINKDTKVIVQGITGKQGTFHTEQMLAY-GTNIVGGVTPGKGGT------TVLGL----PVFNTVAEAVEATGANAS 69 (291)
T ss_pred CceEecCCCeEEEeCCCchHHHHHHHHHHHC-CCCEEEEECCCCCCC------eEeCe----eccCCHHHHhhccCCCEE
Confidence 3333346789999996 77888999988876 44455455554 22 12354 599999999874359999
Q ss_pred EEcCCCcccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 78 YLPLPTSMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+|++|...-.+.+.+|.++| |.+++-.- ...+++.++|.+.|+++|+.++
T Consensus 70 vi~vp~~~v~~~l~e~~~~gvk~avI~s~-Gf~~~~~~~l~~~a~~~girvl 120 (291)
T PRK05678 70 VIYVPPPFAADAILEAIDAGIDLIVCITE-GIPVLDMLEVKAYLERKKTRLI 120 (291)
T ss_pred EEEcCHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999 55454221 2246667799999999998875
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00022 Score=65.11 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=54.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|||||+|.||..++..++.. +++|++ +++. .+....+...|. .+ .+++|+++. .|+|++++|...+.
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~-G~~ViV-~~r~-~~s~~~A~~~G~----~v-~sl~Eaak~--ADVV~llLPd~~t~ 85 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDS-GVEVVV-GVRP-GKSFEVAKADGF----EV-MSVSEAVRT--AQVVQMLLPDEQQA 85 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHC-cCEEEE-EECc-chhhHHHHHcCC----EE-CCHHHHHhc--CCEEEEeCCChHHH
Confidence 45799999999999999999977 788774 5444 334444555664 23 489999986 89999999986655
Q ss_pred HHH
Q 018020 88 KWA 90 (362)
Q Consensus 88 ~~~ 90 (362)
.++
T Consensus 86 ~V~ 88 (335)
T PRK13403 86 HVY 88 (335)
T ss_pred HHH
Confidence 443
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00032 Score=61.49 Aligned_cols=95 Identities=21% Similarity=0.236 Sum_probs=64.8
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|||+||| +|.||...+..|.+. +.+|+ ++++++++++.+++.+ ++... ....+..+.++. .|+|+++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~-G~~V~-v~~r~~~~~~~l~~~~~~~~~~~g~~~~-~~~~~~~ea~~~--aDvVila 75 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA-GNKII-IGSRDLEKAEEAAAKALEELGHGGSDIK-VTGADNAEAAKR--ADVVILA 75 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-CCEEE-EEEcCHHHHHHHHHHHHhhccccCCCce-EEEeChHHHHhc--CCEEEEE
Confidence 5799997 899999999998766 56765 6799998888776643 21101 112455677764 8999999
Q ss_pred CCCcccHHHHHHHHH--cCCeEE-EeCCCCC
Q 018020 81 LPTSMHVKWAISVAQ--KKKHLL-MEKPMAL 108 (362)
Q Consensus 81 ~~~~~h~~~~~~al~--~gk~V~-~EKP~~~ 108 (362)
+|+....+++..... .++-|+ |-+|+..
T Consensus 76 vp~~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 76 VPWDHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred CCHHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 999988877765432 243332 4556543
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05722 glucose-6-phosphate 1-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00049 Score=66.99 Aligned_cols=119 Identities=23% Similarity=0.307 Sum_probs=78.4
Q ss_pred CCceeEEEEEec-cHHHH-HHHHHHhc------C-CCcEEEEEEcCCHH---H--------------------HHHHHHH
Q 018020 5 SQAAIRFGIIGA-ADIAR-KLSRAITL------A-PNAVLSAVASRSLE---K--------------------ATNFAKA 52 (362)
Q Consensus 5 ~~~~~~v~iiG~-G~~g~-~~~~~~~~------~-~~~~vv~v~d~~~~---~--------------------~~~~~~~ 52 (362)
.+.+.-+.|.|+ |-.++ ...|+|-+ + +++.|+|+.-.... - .+.|.+.
T Consensus 6 ~~~~~~~vifGatGDLa~rkL~PaL~~L~~~~~lp~~~~IiG~aR~~~~~e~~r~~v~~~l~~~~~~~~~~~~~~~F~~~ 85 (495)
T PRK05722 6 TAEPCDLVIFGATGDLARRKLLPALYNLYKAGLLPEDFRIIGVARRDWSDEDFREVVREALKEFARTPFDEEVWERFLSR 85 (495)
T ss_pred CCCCeEEEEeCCchHHhHhhHHHHHHHHHHcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHhccCccCHHHHHHHHhh
Confidence 445788899997 66666 35665522 2 36899987743211 0 1112221
Q ss_pred cCC----CCCCcccCCHHHHhcC-------CCCcEEEEcCCCcccHHHHHHHHHcC-------CeEEEeCCCCCCHHHHH
Q 018020 53 NNF----PPDAKVYGSYEALLDD-------KDIDAVYLPLPTSMHVKWAISVAQKK-------KHLLMEKPMALNVAEFD 114 (362)
Q Consensus 53 ~~~----~~~~~~~~~~~e~l~~-------~~~D~V~i~~~~~~h~~~~~~al~~g-------k~V~~EKP~~~~~~~~~ 114 (362)
... -.+...|..+.+.|++ ....++++++||..+..++....++| ..|++|||++.|++.|+
T Consensus 86 ~~Y~~~d~~~~e~y~~L~~~L~~~e~~~~~~~nrlFYLAvPPs~F~~I~~~L~~~gl~~~~g~~RIVIEKPFG~DL~SA~ 165 (495)
T PRK05722 86 LYYVSGDVTDPESYERLKELLEELDEERGTGGNRVFYLATPPSLFGTICENLAAAGLNEGGGWRRVVIEKPFGHDLASAR 165 (495)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCCceEEEEECCHHHHHHHHHHHHHhCCCcCCCCcEEEEECCCCCCHHHHH
Confidence 100 0112234445555643 23568999999999999999888887 68999999999999999
Q ss_pred HHHHHHHHc
Q 018020 115 VILNACEEN 123 (362)
Q Consensus 115 ~l~~~a~~~ 123 (362)
+|.+...+.
T Consensus 166 ~Ln~~l~~~ 174 (495)
T PRK05722 166 ELNDQVGEV 174 (495)
T ss_pred HHHHHHHhc
Confidence 999988763
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00028 Score=66.62 Aligned_cols=92 Identities=17% Similarity=0.240 Sum_probs=71.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc--
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS-- 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-- 84 (362)
+.-||.|||+|-||.-.+..|... ++.-+.|++|+.++++.++++++.. +..++++.+.|. +.|+|+.+|...
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~-g~~~i~IaNRT~erA~~La~~~~~~--~~~l~el~~~l~--~~DvVissTsa~~~ 251 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEK-GVKKITIANRTLERAEELAKKLGAE--AVALEELLEALA--EADVVISSTSAPHP 251 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHhCCe--eecHHHHHHhhh--hCCEEEEecCCCcc
Confidence 345799999999999999999887 5666779999999999999999842 334455555565 499999987654
Q ss_pred -ccHHHHHHHHHcCCe-EEEe
Q 018020 85 -MHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 85 -~h~~~~~~al~~gk~-V~~E 103 (362)
...+.+..+++.-++ ++++
T Consensus 252 ii~~~~ve~a~~~r~~~livD 272 (414)
T COG0373 252 IITREMVERALKIRKRLLIVD 272 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEE
Confidence 457788888887777 5544
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00038 Score=59.28 Aligned_cols=82 Identities=21% Similarity=0.129 Sum_probs=64.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+++++|+|+|.+|..++..|.+. +.+++..-.+.+++.+..++..+.. ..-.+.++..+. .|+|++++|-..+.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a-g~eV~igs~r~~~~~~a~a~~l~~~---i~~~~~~dA~~~--aDVVvLAVP~~a~~ 74 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA-GHEVIIGSSRGPKALAAAAAALGPL---ITGGSNEDAAAL--ADVVVLAVPFEAIP 74 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC-CCeEEEecCCChhHHHHHHHhhccc---cccCChHHHHhc--CCEEEEeccHHHHH
Confidence 36899999999999999999877 6888855577777777777777642 234566666664 89999999998888
Q ss_pred HHHHHHHH
Q 018020 88 KWAISVAQ 95 (362)
Q Consensus 88 ~~~~~al~ 95 (362)
.++....+
T Consensus 75 ~v~~~l~~ 82 (211)
T COG2085 75 DVLAELRD 82 (211)
T ss_pred hHHHHHHH
Confidence 88776664
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0014 Score=60.33 Aligned_cols=130 Identities=14% Similarity=0.089 Sum_probs=89.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC----HHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS----YEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~----~~e~l~~~~~D~V~i~~~~~ 84 (362)
=+|+|+|+|..|.--++.++.+ +++++ ++|+++++++ +++++|-. .++++ .-+.+.. .+|+++++.+ .
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~-ga~Vi-a~~~~~~K~e-~a~~lGAd---~~i~~~~~~~~~~~~~-~~d~ii~tv~-~ 239 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAM-GAEVI-AITRSEEKLE-LAKKLGAD---HVINSSDSDALEAVKE-IADAIIDTVG-P 239 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEE-EEeCChHHHH-HHHHhCCc---EEEEcCCchhhHHhHh-hCcEEEECCC-h
Confidence 4799999997777777777777 48888 4678877554 45666642 22222 2222222 2999999999 7
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCC-----------------------CCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPM-----------------------ALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA 140 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~-----------------------~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~ 140 (362)
.-.+...++|+.| +.|++--|. ..+..+.+++++++.+.+++-.+....+....-.
T Consensus 240 ~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~ 319 (339)
T COG1064 240 ATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINE 319 (339)
T ss_pred hhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHH
Confidence 7788888888776 666654441 2356899999999999999888764555555444
Q ss_pred HHHHhh
Q 018020 141 QMKEFV 146 (362)
Q Consensus 141 ~~k~~i 146 (362)
.+.++.
T Consensus 320 A~~~m~ 325 (339)
T COG1064 320 AYERME 325 (339)
T ss_pred HHHHHH
Confidence 445453
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=63.60 Aligned_cols=122 Identities=8% Similarity=0.044 Sum_probs=87.7
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH--HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL--EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+.-||.+-|. |..|..|.+.+.+- +-+||+-+.+.. +... .+|+ .+|++.+|+.+..++|+++|++|+
T Consensus 28 ~~t~v~vqGitg~~g~~h~~~~~~y-gt~iv~GV~Pgkgg~~v~----~~Gv----pvy~sv~ea~~~~~~D~avI~VPa 98 (317)
T PTZ00187 28 KNTKVICQGITGKQGTFHTEQAIEY-GTKMVGGVNPKKAGTTHL----KHGL----PVFATVKEAKKATGADASVIYVPP 98 (317)
T ss_pred CCCeEEEecCCChHHHHHHHHHHHh-CCcEEEEECCCCCCceEe----cCCc----cccCCHHHHhcccCCCEEEEecCH
Confidence 5679999995 88899999999887 778899888764 2211 1355 499999999987789999999999
Q ss_pred cccHHHHHHHHHcCC-eEEEeCCCCCCHHHHHHHHHHHH-HcCCEEE-EeeecccChh
Q 018020 84 SMHVKWAISVAQKKK-HLLMEKPMALNVAEFDVILNACE-ENGVQLM-DGTMWVHNPR 138 (362)
Q Consensus 84 ~~h~~~~~~al~~gk-~V~~EKP~~~~~~~~~~l~~~a~-~~~~~~~-v~~~~r~~p~ 138 (362)
..-.+.+.+|+++|. .+.|=. -.....+..++.+.++ ++|+.+. .|+.--++|.
T Consensus 99 ~~v~dai~Ea~~aGI~~~Viit-eGfpe~d~~~l~~~~~~~~g~rliGPNc~Gii~p~ 155 (317)
T PTZ00187 99 PHAASAIIEAIEAEIPLVVCIT-EGIPQHDMVKVKHALLSQNKTRLIGPNCPGIIKPG 155 (317)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC-CCCchhhHHHHHHHHhhcCCCEEECCCCceEEcch
Confidence 999999999999994 444421 1223444556666654 4676543 3344445664
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00046 Score=63.13 Aligned_cols=74 Identities=12% Similarity=0.214 Sum_probs=54.5
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----------cC-CC--------CCCcccCCHHHHhc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----------NN-FP--------PDAKVYGSYEALLD 70 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----------~~-~~--------~~~~~~~~~~e~l~ 70 (362)
||+|||+|.||...+..+.+. +.+|+ ++|+++++.+.+.+. .+ +. ......+++++.++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTT-LVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 699999999999998888766 67755 789999887765432 01 10 01235678888887
Q ss_pred CCCCcEEEEcCCCcccH
Q 018020 71 DKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 71 ~~~~D~V~i~~~~~~h~ 87 (362)
+ +|+|+.|+|.....
T Consensus 81 ~--aD~Vi~avpe~~~~ 95 (288)
T PRK09260 81 D--ADLVIEAVPEKLEL 95 (288)
T ss_pred C--CCEEEEeccCCHHH
Confidence 5 89999999998653
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00071 Score=62.90 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=61.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---------------CC-CcccCCHHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---------------PD-AKVYGSYEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---------------~~-~~~~~~~~e~l~~~ 72 (362)
|||.|||+|+.|....-.|.++ +.+|+ .+|.++++.+.+.+. ..| .+ ....+|+++.+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~-GHeVv-~vDid~~KV~~ln~g-~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL-GHEVV-CVDIDESKVELLNKG-ISPIYEPGLEELLKENLASGRLRFTTDYEEAVKD- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc-CCeEE-EEeCCHHHHHHHhCC-CCCCcCccHHHHHHhccccCcEEEEcCHHHHHhc-
Confidence 6899999999999998888887 57767 678998887765332 111 11 4567788888876
Q ss_pred CCcEEEEcCCCccc------HHHHHHHHH------cCCeEEEeCC
Q 018020 73 DIDAVYLPLPTSMH------VKWAISVAQ------KKKHLLMEKP 105 (362)
Q Consensus 73 ~~D~V~i~~~~~~h------~~~~~~al~------~gk~V~~EKP 105 (362)
.|+++|++|++.. ..++..+++ .++||++-|-
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 6666666554432 233333322 2469999993
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00013 Score=66.47 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=76.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CC--CcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PD--AKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~--~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-+|.|||+|..|+..+..+... ++.-+.|+||+.++++.++++++-. +. +..++++.+.+. +.|+|+.+||...
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~--~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA--AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC--CCCEEEECCcCCC
Confidence 4799999999999999988877 5544669999999999998876311 11 112344444554 4999999998754
Q ss_pred cH----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 86 HV----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 86 h~----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+. ++-...++.+. ++++ +..++.+ -.+++.|+++|.++.-|.....
T Consensus 205 ~~~~~~~~~~~~l~~~~-~v~D--ivY~P~~-T~ll~~A~~~G~~~~~G~~ML~ 254 (284)
T PRK12549 205 AKHPGLPLPAELLRPGL-WVAD--IVYFPLE-TELLRAARALGCRTLDGGGMAV 254 (284)
T ss_pred CCCCCCCCCHHHcCCCc-EEEE--eeeCCCC-CHHHHHHHHCCCeEecCHHHHH
Confidence 32 12223344443 3333 2222222 4677788888888877754444
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00025 Score=65.32 Aligned_cols=110 Identities=18% Similarity=0.106 Sum_probs=84.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-.++|||+|..+..|+.++...-+++=+-|++|+++.+++++..+.- +..+...+|.++.++. .|+|+-+||...
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~--aDiIvt~T~s~~- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG--ADIVVTATPSTE- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc--CCEEEEecCCCC-
Confidence 45899999999999999998887777788999999999988855321 0124678999999986 999999999877
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+-+-..-++.|.||-. ++.+.....|+-...-+..
T Consensus 208 Pil~~~~l~~G~hI~a---iGad~p~k~Eld~e~l~ra 242 (330)
T COG2423 208 PVLKAEWLKPGTHINA---IGADAPGKRELDPEVLARA 242 (330)
T ss_pred CeecHhhcCCCcEEEe---cCCCCcccccCCHHHHHhc
Confidence 4344456788999875 6666666777766554433
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00055 Score=62.50 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=75.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------C--CCCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------N--FPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~--~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
++||+|||+|.+|...+..+.+.. .+ |-++.++++..+++.... | +|++..+++|+++++++ .|+|+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng-~~-V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~--ad~iv 76 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNG-HE-VRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDG--ADIIV 76 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcC-Ce-eEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhc--CCEEE
Confidence 368999999999999999987763 44 447889888888776642 1 34566778999999996 99999
Q ss_pred EcCCCcccHHHHHHH---HHcC-CeEEEeCCCCCC
Q 018020 79 LPLPTSMHVKWAISV---AQKK-KHLLMEKPMALN 109 (362)
Q Consensus 79 i~~~~~~h~~~~~~a---l~~g-k~V~~EKP~~~~ 109 (362)
+++|.....+++... ++.+ +-|.|-|-+-.+
T Consensus 77 ~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 77 IAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred EECChHHHHHHHHHHhhhccCCCeEEEEeccccCC
Confidence 999999998888874 3445 346688876553
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.1e-05 Score=69.20 Aligned_cols=106 Identities=21% Similarity=0.124 Sum_probs=67.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC-CCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF-PPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.-+++|||+|..|..|+..+...-.++-+-|++|+++++++|++++.- ...+...+|.++.+.. .|+|+-+||....
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~--aDii~taT~s~~~ 205 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRG--ADIIVTATPSTTP 205 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTT--SSEEEE----SSE
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhccc--CCEEEEccCCCCC
Confidence 458999999999999999987654477788999999999998887642 1124568999999986 8999999998774
Q ss_pred HHHHH-HHHHcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 87 VKWAI-SVAQKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 87 ~~~~~-~al~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
.+++. .-++.|.||.. ++.+..+.+||-.
T Consensus 206 ~P~~~~~~l~~g~hi~~---iGs~~~~~~El~~ 235 (313)
T PF02423_consen 206 APVFDAEWLKPGTHINA---IGSYTPGMRELDD 235 (313)
T ss_dssp EESB-GGGS-TT-EEEE----S-SSTTBESB-H
T ss_pred CccccHHHcCCCcEEEE---ecCCCCchhhcCH
Confidence 23333 56788999986 5554444444443
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=67.95 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=71.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCC----CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFP----PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
.-+++|||+|..|..|+..+... |.++-+-|++|+++++++|++++.-. ..+...+|.++.+.+ .|+|+-+|+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~--ADIVvtaT~ 232 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG--SDIVTYCNS 232 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC--CCEEEEccC
Confidence 45789999999999999988764 56888889999999999988776311 024567999999986 999999997
Q ss_pred Cccc----HHHH-HHHHHcCCeEEE
Q 018020 83 TSMH----VKWA-ISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h----~~~~-~~al~~gk~V~~ 102 (362)
...- .+++ ..-++.|.||.+
T Consensus 233 s~~~~~s~~Pv~~~~~lkpG~hv~~ 257 (379)
T PRK06199 233 GETGDPSTYPYVKREWVKPGAFLLM 257 (379)
T ss_pred CCCCCCCcCcEecHHHcCCCcEEec
Confidence 5321 1333 346789999985
|
|
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00019 Score=67.44 Aligned_cols=92 Identities=22% Similarity=0.394 Sum_probs=62.8
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC------C---CCCcc-cCCHHHHhcCCCCcE
Q 018020 8 AIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF------P---PDAKV-YGSYEALLDDKDIDA 76 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~------~---~~~~~-~~~~~e~l~~~~~D~ 76 (362)
++||+|+| +|.+|...++.+.++|.++|+++........+.+...+.. + .+..+ -.+.+++ . ++|+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~~Dv 79 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-D--DVDI 79 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-c--CCCE
Confidence 69999998 7999999999999999999998832222222222211111 0 00011 1233433 3 6999
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
|+.++|+..+.+++..+.++|+.|+.
T Consensus 80 Vf~a~p~~~s~~~~~~~~~~G~~vID 105 (349)
T PRK08664 80 VFSALPSDVAGEVEEEFAKAGKPVFS 105 (349)
T ss_pred EEEeCChhHHHHHHHHHHHCCCEEEE
Confidence 99999999999999988899987764
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.001 Score=64.79 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=49.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCC---------------CCCcccCCHHHHhcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFP---------------PDAKVYGSYEALLDD 71 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~e~l~~ 71 (362)
+|||+|||+|++|...+-.|.+.. +++|++ +|.++++.+.+.+.. .+ ......+++++.+.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~g-vD~~~~~v~~l~~g~-~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVV-VDISVPRIDAWNSDQ-LPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEE-EECCHHHHHHHHcCC-CccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence 378999999999999988887663 688774 589998888754321 10 012345666666665
Q ss_pred CCCcEEEEcCCC
Q 018020 72 KDIDAVYLPLPT 83 (362)
Q Consensus 72 ~~~D~V~i~~~~ 83 (362)
.|+++||+|+
T Consensus 79 --advi~I~V~T 88 (473)
T PLN02353 79 --ADIVFVSVNT 88 (473)
T ss_pred --CCEEEEEeCC
Confidence 7777776543
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00024 Score=64.34 Aligned_cols=126 Identities=19% Similarity=0.183 Sum_probs=81.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-+++|+|+|.+|+..+..+... +.++. +++|++++++.++++++-... ....++++.. ..++|+|+.+||...+..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~-v~~R~~~~~~~la~~~~~~~~-~~~~~~~~~~-~~~~DivInatp~gm~~~ 193 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVI-IANRTVSKAEELAERFQRYGE-IQAFSMDELP-LHRVDLIINATSAGMSGN 193 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHHHhhcCc-eEEechhhhc-ccCccEEEECCCCCCCCC
Confidence 4799999999999999988876 46644 889999999888887642111 1223444432 236999999999864432
Q ss_pred -----HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHH
Q 018020 89 -----WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQM 142 (362)
Q Consensus 89 -----~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~ 142 (362)
+....++.++ ++++ +..+..+. .+++.|++.|+.+..|...-........
T Consensus 194 ~~~~~~~~~~l~~~~-~v~D--~~y~p~~T-~ll~~A~~~G~~~vdG~~Ml~~Qa~~~f 248 (270)
T TIGR00507 194 IDEPPVPAEKLKEGM-VVYD--MVYNPGET-PFLAEAKSLGTKTIDGLGMLVAQAALAF 248 (270)
T ss_pred CCCCCCCHHHcCCCC-EEEE--eccCCCCC-HHHHHHHHCCCeeeCCHHHHHHHHHHHH
Confidence 2234555564 4444 23332222 5899999999998887655443333333
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00062 Score=62.90 Aligned_cols=114 Identities=15% Similarity=0.093 Sum_probs=69.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCCC---------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNFP---------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~~---------~~~~~~~~~~e~l 69 (362)
++|+|||+|.||...+..+.+. +.+|+ ++|++++..+...+ +.|.. .......|+++.+
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~-G~~V~-v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~ 80 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARA-GHEVR-LWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAV 80 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHC-CCeeE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence 4799999999999999998877 67755 88999876665321 22321 0124667888888
Q ss_pred cCCCCcEEEEcCCCccc--HHHHHHHHHc-CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 70 DDKDIDAVYLPLPTSMH--VKWAISVAQK-KKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h--~~~~~~al~~-gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++ +|+|+.++|.... ..+....-+. ..++++- -+.+.....++.+.++..+..+.
T Consensus 81 ~~--ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~--ssts~~~~~~la~~~~~~~~~~~ 138 (308)
T PRK06129 81 AD--ADYVQESAPENLELKRALFAELDALAPPHAILA--SSTSALLASAFTEHLAGRERCLV 138 (308)
T ss_pred CC--CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE--EeCCCCCHHHHHHhcCCcccEEE
Confidence 75 9999999998743 2222222111 1233332 23333445566666655444333
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00053 Score=67.60 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=55.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cC-CC------C-CCcccCCHHHHhcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NN-FP------P-DAKVYGSYEALLDDKD 73 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~-~~------~-~~~~~~~~~e~l~~~~ 73 (362)
+||+|||+|.||...+..+.+. +++|+ ++|+++++.+.+.+. .+ +. . .....+|+++.+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-G~~V~-v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~-- 80 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-GIDVA-VFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAG-- 80 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcC--
Confidence 5899999999999999988776 67765 899999887665321 00 00 0 13467889888875
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
+|+|+.++|+...
T Consensus 81 aD~Vieavpe~~~ 93 (495)
T PRK07531 81 ADWIQESVPERLD 93 (495)
T ss_pred CCEEEEcCcCCHH
Confidence 9999999999864
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00061 Score=62.05 Aligned_cols=122 Identities=7% Similarity=0.056 Sum_probs=85.5
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-||.+.| +|..|..|.+.++.- +-+|++-+.+..-. + +-+|+ .+|.|+.|+.+..++|+++|++|...
T Consensus 11 ~~~~v~~~gi~~~~~~~~~~~~~~y-gt~~~~gV~p~~~~-~---~i~G~----~~y~sv~dlp~~~~~DlAvI~vPa~~ 81 (300)
T PLN00125 11 KNTRVICQGITGKNGTFHTEQAIEY-GTKMVGGVTPKKGG-T---EHLGL----PVFNTVAEAKAETKANASVIYVPPPF 81 (300)
T ss_pred CCCeEEEecCCCHHHHHHHHHHHHh-CCcEEEEECCCCCC-c---eEcCe----eccCCHHHHhhccCCCEEEEecCHHH
Confidence 456899999 588899999998877 67788888876310 1 12355 59999999997656899999999999
Q ss_pred cHHHHHHHHHcCCe-EEEeCCCCCCHHHH-HHHHHHHHHcCCEEE-EeeecccChh
Q 018020 86 HVKWAISVAQKKKH-LLMEKPMALNVAEF-DVILNACEENGVQLM-DGTMWVHNPR 138 (362)
Q Consensus 86 h~~~~~~al~~gk~-V~~EKP~~~~~~~~-~~l~~~a~~~~~~~~-v~~~~r~~p~ 138 (362)
-...+++|+++|.+ +++=-- .....+. +++.+.++++|+.++ .++.--++|.
T Consensus 82 v~~al~e~~~~Gvk~~vIisa-Gf~e~g~~~~~~~~ar~~girviGPNc~Gii~~~ 136 (300)
T PLN00125 82 AAAAILEAMEAELDLVVCITE-GIPQHDMVRVKAALNRQSKTRLIGPNCPGIIKPG 136 (300)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCcccHHHHHHHHHhhcCCEEECCCCceeeccc
Confidence 99999999999944 544211 1222223 444455888988654 3333334443
|
|
| >KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00047 Score=63.51 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=112.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc-cCCHHHHhc--CCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV-YGSYEALLD--DKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~e~l~--~~~~D~V~i~~~~~ 84 (362)
+-+|.++|+|+.+...+..+.+..+++|+ |+.+....++++++..++.+ +.+ ..+-+.-|. -.+.|+|+--+|..
T Consensus 2 ~~~vlllgsg~v~~p~~d~ls~~~dv~vt-va~~~~~~~~~~~~~~~~~a-v~ldv~~~~~~L~~~v~~~D~viSLlP~t 79 (445)
T KOG0172|consen 2 KKGVLLLGSGFVSRPVADFLSRKKDVNVT-VASRTLKDAEALVKGINIKA-VSLDVADEELALRKEVKPLDLVISLLPYT 79 (445)
T ss_pred CcceEEecCccccchHHHHHhhcCCceEE-EehhhHHHHHHHhcCCCccc-eEEEccchHHHHHhhhcccceeeeeccch
Confidence 45799999999999999999888889877 66677888999988776531 111 122221222 14699999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh--c-CCCCccceEEEEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV--S-DPQRFGQLRTMHSC 161 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i--~-~~g~iG~i~~i~~~ 161 (362)
.|.-+++.|+..++|+.. -+..-.+.++|-+.+..+|...+- ..- +.|.+..+-++= . .-..+|+|..+..+
T Consensus 80 ~h~lVaK~~i~~~~~~vt---sSyv~pe~~~L~~~~v~AG~ti~~-e~g-ldpGidhm~a~~ti~~vh~hgg~i~sf~sy 154 (445)
T KOG0172|consen 80 FHPLVAKGCIITKEDSVT---SSYVDPELEELEKAAVPAGSTIMN-EIG-LDPGIDHMPAMKTIDLVHEHGGKIKSFKSY 154 (445)
T ss_pred hhHHHHHHHHHhhccccc---ccccCHHHHhhhhhccCCCceEec-ccc-cCcchhhhhhhccchHHHhhcceeeehhhh
Confidence 999999999999999765 355678899999999999988763 222 777776555431 0 01345788887777
Q ss_pred eeecCCcc
Q 018020 162 FSFAGDAE 169 (362)
Q Consensus 162 ~~~~~~~~ 169 (362)
+++.+.++
T Consensus 155 cGglpape 162 (445)
T KOG0172|consen 155 CGGLPAPE 162 (445)
T ss_pred cCCccChh
Confidence 76654444
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0015 Score=60.36 Aligned_cols=75 Identities=12% Similarity=0.145 Sum_probs=54.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----cCC--C--------CCCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----NNF--P--------PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----~~~--~--------~~~~~~~~~~e~l~~~~ 73 (362)
..||+|||+|.||...+..+.+. +.+|+ ++|+++++.+++.+. .+. + ......+|+++.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 79 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK-GLQVV-LIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG-- 79 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc--
Confidence 35799999999999999988765 67766 689998887766542 221 0 001345678887765
Q ss_pred CcEEEEcCCCccc
Q 018020 74 IDAVYLPLPTSMH 86 (362)
Q Consensus 74 ~D~V~i~~~~~~h 86 (362)
+|+|++++|+..+
T Consensus 80 aDlVi~av~~~~~ 92 (311)
T PRK06130 80 ADLVIEAVPEKLE 92 (311)
T ss_pred CCEEEEeccCcHH
Confidence 8999999999863
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0009 Score=62.06 Aligned_cols=124 Identities=15% Similarity=0.253 Sum_probs=80.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC--------------CCCcccCCHHHHhcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP--------------PDAKVYGSYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~e~l~~~ 72 (362)
.++|++||+|++|-..+-.+.+. +++++| +|.++.+.+.+.+--. +. -..+..+|++++-
T Consensus 9 ~~~I~ViGLGYVGLPlA~~fA~~-G~~ViG-~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~--- 83 (436)
T COG0677 9 SATIGVIGLGYVGLPLAAAFASA-GFKVIG-VDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK--- 83 (436)
T ss_pred ceEEEEEccccccHHHHHHHHHc-CCceEe-EeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc---
Confidence 48999999999999888887766 788885 6888877665532110 00 0124455555553
Q ss_pred CCcEEEEcCCCccc-------------HHHHHHHHHcCCeEEEeC--CCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh
Q 018020 73 DIDAVYLPLPTSMH-------------VKWAISVAQKKKHLLMEK--PMALNVAEFDVILNACEENGVQLMDGTMWVHNP 137 (362)
Q Consensus 73 ~~D~V~i~~~~~~h-------------~~~~~~al~~gk~V~~EK--P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p 137 (362)
++|+.+||.|++.- .+-+...|+.|-=|++|. |.+++.+-++-+++. +.|+++-..+..-|+|
T Consensus 84 ~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~--~sgL~~~~Df~laysP 161 (436)
T COG0677 84 ECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE--RSGLKFGEDFYLAYSP 161 (436)
T ss_pred cCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh--cCCCcccceeeEeeCc
Confidence 58999988887642 344556778898899997 666666665555443 2555554455555555
Q ss_pred h
Q 018020 138 R 138 (362)
Q Consensus 138 ~ 138 (362)
.
T Consensus 162 E 162 (436)
T COG0677 162 E 162 (436)
T ss_pred c
Confidence 4
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00019 Score=66.79 Aligned_cols=88 Identities=9% Similarity=0.171 Sum_probs=62.0
Q ss_pred ceeEEEEEec-cHHHHHHHHHHh--cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHH-hcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAIT--LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL-LDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~--~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~-l~~~~~D~V~i~~~ 82 (362)
+++||+|+|+ |..|...++.|. .+|.++++.+.+... .-+.+. ..+.. ..+.+.++. ++ ++|+|+.++|
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~-aG~~l~-~~~~~---l~~~~~~~~~~~--~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSES-AGHSVP-FAGKN---LRVREVDSFDFS--QVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECccc-CCCeec-cCCcc---eEEeeCChHHhc--CCCEEEEcCC
Confidence 4699999997 889999999998 689999998887632 111111 11111 122222221 33 6999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+....+++.+++++|+.|+
T Consensus 76 ~~~s~~~v~~~~~~G~~VI 94 (336)
T PRK05671 76 AAVSRSFAEKARAAGCSVI 94 (336)
T ss_pred HHHHHHHHHHHHHCCCeEE
Confidence 9999999999999997655
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0018 Score=59.14 Aligned_cols=74 Identities=11% Similarity=0.079 Sum_probs=52.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-----------cCCC---------CCCcccCCHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-----------NNFP---------PDAKVYGSYEA 67 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-----------~~~~---------~~~~~~~~~~e 67 (362)
..||+|||+|.||...+..+... +.+|+ ++|+++++.++..+. ..+. ......+|+++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH-GFDVT-IYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 35899999999999998888765 56644 789988766554322 1111 12235788888
Q ss_pred HhcCCCCcEEEEcCCCcc
Q 018020 68 LLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 68 ~l~~~~~D~V~i~~~~~~ 85 (362)
.+++ .|+|+.++|...
T Consensus 81 a~~~--aDlVieavpe~~ 96 (287)
T PRK08293 81 AVKD--ADLVIEAVPEDP 96 (287)
T ss_pred HhcC--CCEEEEeccCCH
Confidence 8875 899999999763
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0004 Score=62.69 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=75.6
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH--
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV-- 87 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~-- 87 (362)
++.|+|+|..++..+..+.+. ++.-+.|++|+.++++.+++.++.. + .+-+...+.|+||.+||...+.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~~~a~~la~~~~~~-----~---~~~~~~~~~dlvINaTp~Gm~~~~ 194 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDA-GFTDGTIVARNEKTGKALAELYGYE-----W---RPDLGGIEADILVNVTPIGMAGGP 194 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhCCc-----c---hhhcccccCCEEEECCccccCCCC
Confidence 899999999999998888877 5544669999999999999887532 1 1112234589999999976542
Q ss_pred -----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 018020 88 -----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHN 136 (362)
Q Consensus 88 -----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~ 136 (362)
++-...+..+ .+++| +..++. --.+++.|++.|.++.-|.....+
T Consensus 195 ~~~~~pi~~~~l~~~-~~v~D--~vY~P~-~T~ll~~A~~~G~~~i~Gl~MLi~ 244 (272)
T PRK12550 195 EADKLAFPEAEIDAA-SVVFD--VVALPA-ETPLIRYARARGKTVITGAEVIAL 244 (272)
T ss_pred ccccCCCCHHHcCCC-CEEEE--eecCCc-cCHHHHHHHHCcCeEeCCHHHHHH
Confidence 1222334333 34444 222222 246778888888888777554443
|
|
| >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00087 Score=60.89 Aligned_cols=101 Identities=20% Similarity=0.137 Sum_probs=77.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEc-CCHHHHHHHHHHc---CC-C--------------CCCcccCCHH-
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP-NAVLSAVAS-RSLEKATNFAKAN---NF-P--------------PDAKVYGSYE- 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d-~~~~~~~~~~~~~---~~-~--------------~~~~~~~~~~- 66 (362)
++||||=|+|.||+..++++...+ ++++|||-| .+++....+.+.- |. + .+++++.+.+
T Consensus 1 ~ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~p 80 (335)
T COG0057 1 MIKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERDP 80 (335)
T ss_pred CcEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEecCCh
Confidence 489999999999999999998888 699999999 6777666655442 11 1 1234444555
Q ss_pred HHhc--CCCCcEEEEcCCCcccHHHHHHHHHcC--CeEEEeCCCCC
Q 018020 67 ALLD--DKDIDAVYLPLPTSMHVKWAISVAQKK--KHLLMEKPMAL 108 (362)
Q Consensus 67 e~l~--~~~~D~V~i~~~~~~h~~~~~~al~~g--k~V~~EKP~~~ 108 (362)
+.|. +..+|+|+=|||-....+-+..-+++| |.|++--|...
T Consensus 81 ~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~ 126 (335)
T COG0057 81 ANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKD 126 (335)
T ss_pred HHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCC
Confidence 5654 346899999999999999999999996 99998877554
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00023 Score=66.11 Aligned_cols=89 Identities=10% Similarity=0.070 Sum_probs=65.2
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+++||+|||+ |..|..+++.|.+ +|.++|..+.+.+. .-+.+. ++. .+ ..+.+.++.. -.++|+|+.++|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s-aG~~~~--~~~-~~-~~v~~~~~~~-~~~~Dvvf~a~p~ 76 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES-AGETLR--FGG-KS-VTVQDAAEFD-WSQAQLAFFVAGR 76 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc-CCceEE--ECC-cc-eEEEeCchhh-ccCCCEEEECCCH
Confidence 5899999997 8889999999987 89999998876532 122221 111 11 2334555542 1369999999999
Q ss_pred cccHHHHHHHHHcCCeEE
Q 018020 84 SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~ 101 (362)
....+++.+++++|..|+
T Consensus 77 ~~s~~~~~~~~~~g~~VI 94 (336)
T PRK08040 77 EASAAYAEEATNAGCLVI 94 (336)
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 999999999999998665
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00067 Score=63.59 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=68.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc--------C--CCCCCcccCCHHHHhcCCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN--------N--FPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~--------~--~~~~~~~~~~~~e~l~~~~~D 75 (362)
+.++||+|||+|.||..++..+.+.. .++ ++.++++..+.+.+.. + ++......+|+++.+++ .|
T Consensus 5 ~~~mkI~IiGaGa~G~alA~~La~~g--~v~-l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~--aD 79 (341)
T PRK12439 5 KREPKVVVLGGGSWGTTVASICARRG--PTL-QWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC--AD 79 (341)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCC--CEE-EEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc--CC
Confidence 45689999999999999998887664 333 4568888887776532 1 11123456788887764 89
Q ss_pred EEEEcCCCcccHHHHHHHHH---cCCe-EEEeCCCCC
Q 018020 76 AVYLPLPTSMHVKWAISVAQ---KKKH-LLMEKPMAL 108 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~---~gk~-V~~EKP~~~ 108 (362)
+|++++|+..+.+++.+... .+.. |.+.|-+..
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 99999999887777666543 2333 458887654
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00083 Score=65.28 Aligned_cols=108 Identities=12% Similarity=0.158 Sum_probs=79.0
Q ss_pred ceeEEEEEec----cHHHHHHHHHHhcCCCc--EEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 7 AAIRFGIIGA----ADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 7 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~--~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
.+-+|+|||+ |.+|...+..+++. ++ +|. .+++... +-.|+ .+|.+++++-. .+|+++|+
T Consensus 6 ~p~siavvGaS~~~~~~g~~~~~~l~~~-gf~g~v~-~Vnp~~~------~i~G~----~~~~sl~~lp~--~~Dlavi~ 71 (447)
T TIGR02717 6 NPKSVAVIGASRDPGKVGYAIMKNLIEG-GYKGKIY-PVNPKAG------EILGV----KAYPSVLEIPD--PVDLAVIV 71 (447)
T ss_pred CCCEEEEEccCCCCCchHHHHHHHHHhC-CCCCcEE-EECCCCC------ccCCc----cccCCHHHCCC--CCCEEEEe
Confidence 4568999999 66888999999876 34 443 3444322 22354 59999999854 59999999
Q ss_pred CCCcccHHHHHHHHHcC-CeEEEe-CCCCC----CHHHHHHHHHHHHHcCCEEE
Q 018020 81 LPTSMHVKWAISVAQKK-KHLLME-KPMAL----NVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g-k~V~~E-KP~~~----~~~~~~~l~~~a~~~~~~~~ 128 (362)
+|+..-.+.+++|.++| +.+++- .-++. ..+.-++|.+.|+++|+.+.
T Consensus 72 vp~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 72 VPAKYVPQVVEECGEKGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999 666551 11111 12334789999999998865
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0017 Score=60.04 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=55.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCCC-----CCCcccCCHHHHhcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNFP-----PDAKVYGSYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~~-----~~~~~~~~~~e~l~~~ 72 (362)
.-||+|||+|.||...+..+... +++|+ ++|++++..+...+ +.+.. ......+|+++.+++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a-G~~V~-l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH-GLDVV-AWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC-
Confidence 35799999999999999888766 78866 89999876554322 11211 112456788888875
Q ss_pred CCcEEEEcCCCccc
Q 018020 73 DIDAVYLPLPTSMH 86 (362)
Q Consensus 73 ~~D~V~i~~~~~~h 86 (362)
+|+|+-+.|....
T Consensus 84 -aDlViEavpE~l~ 96 (321)
T PRK07066 84 -ADFIQESAPEREA 96 (321)
T ss_pred -CCEEEECCcCCHH
Confidence 9999999998764
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00083 Score=65.75 Aligned_cols=112 Identities=17% Similarity=0.169 Sum_probs=75.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+++|+|+|.+|...+..+.+. +++++ +++++.++++.++++++.. ..+++++-+..++|+|+++||.....
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~-G~~V~-i~~R~~~~~~~la~~~~~~-----~~~~~~~~~l~~~DiVInatP~g~~~ 404 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARA-GAELL-IFNRTKAHAEALASRCQGK-----AFPLESLPELHRIDIIINCLPPSVTI 404 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHHhccc-----eechhHhcccCCCCEEEEcCCCCCcc
Confidence 45899999999999999988876 56655 7899999999888876521 22344443234699999999987643
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+ ..+. ++++| +..+..+. .+++.|++.|....-|...-.
T Consensus 405 ~---~~l~---~~v~D--~~Y~P~~T-~ll~~A~~~G~~~~~G~~Ml~ 443 (477)
T PRK09310 405 P---KAFP---PCVVD--INTLPKHS-PYTQYARSQGSSIIYGYEMFA 443 (477)
T ss_pred h---hHHh---hhEEe--ccCCCCCC-HHHHHHHHCcCEEECcHHHHH
Confidence 2 2222 25555 23333222 277888888888777654433
|
|
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00042 Score=62.67 Aligned_cols=71 Identities=21% Similarity=0.156 Sum_probs=57.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.+++|||||+|.||+.++..+.++ +..+. +|||+. -..+++.+|. ..|+.+.++.+. .+|+|+.||.-..-
T Consensus 51 ~tl~IaIIGfGnmGqflAetli~a-Gh~li-~hsRsd--yssaa~~yg~----~~ft~lhdlcer-hpDvvLlctsilsi 121 (480)
T KOG2380|consen 51 ATLVIAIIGFGNMGQFLAETLIDA-GHGLI-CHSRSD--YSSAAEKYGS----AKFTLLHDLCER-HPDVVLLCTSILSI 121 (480)
T ss_pred cceEEEEEecCcHHHHHHHHHHhc-CceeE-ecCcch--hHHHHHHhcc----cccccHHHHHhc-CCCEEEEEehhhhH
Confidence 479999999999999999999888 55544 788865 5666788874 579999997775 79999999875433
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00034 Score=59.19 Aligned_cols=67 Identities=28% Similarity=0.296 Sum_probs=49.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.+|+..++.++.. +++|+ ++|++..... .....+ ..+.+++|+++. .|+|+++.|-.
T Consensus 36 g~tvgIiG~G~IG~~vA~~l~~f-G~~V~-~~d~~~~~~~-~~~~~~-----~~~~~l~ell~~--aDiv~~~~plt 102 (178)
T PF02826_consen 36 GKTVGIIGYGRIGRAVARRLKAF-GMRVI-GYDRSPKPEE-GADEFG-----VEYVSLDELLAQ--ADIVSLHLPLT 102 (178)
T ss_dssp TSEEEEESTSHHHHHHHHHHHHT-T-EEE-EEESSCHHHH-HHHHTT-----EEESSHHHHHHH---SEEEE-SSSS
T ss_pred CCEEEEEEEcCCcCeEeeeeecC-CceeE-EecccCChhh-hccccc-----ceeeehhhhcch--hhhhhhhhccc
Confidence 46899999999999999999977 78877 6778765444 223333 247799999996 99999999854
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0025 Score=58.47 Aligned_cols=74 Identities=16% Similarity=0.166 Sum_probs=52.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----------cCC-C--------CCCcccCCHHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----------NNF-P--------PDAKVYGSYEAL 68 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----------~~~-~--------~~~~~~~~~~e~ 68 (362)
..||+|||+|.||...+..+... +.+|+ ++|+++++++...++ .+. + ......+++++
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 80 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA-GYDVL-LNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED- 80 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence 46899999999999998888766 67766 789998877654321 121 1 01234567754
Q ss_pred hcCCCCcEEEEcCCCccc
Q 018020 69 LDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h 86 (362)
++ +.|+|+.++|...+
T Consensus 81 ~~--~aD~Vieavpe~~~ 96 (292)
T PRK07530 81 LA--DCDLVIEAATEDET 96 (292)
T ss_pred hc--CCCEEEEcCcCCHH
Confidence 44 59999999998754
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00071 Score=59.83 Aligned_cols=118 Identities=9% Similarity=0.128 Sum_probs=91.7
Q ss_pred CCccCCceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 1 MATESQAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|+.--.+.-||.+-|. |.+|..|...+.+- +.++|+-+.+..- .+. -.++ .+|++.+|.++..++|+.+|
T Consensus 1 m~il~~k~tkvivqGitg~~gtfh~~~~l~y-Gt~~V~GvtPgkg-G~~---~~g~----PVf~tV~EA~~~~~a~~svI 71 (293)
T COG0074 1 MSILLNKDTKVIVQGITGKQGTFHTEQMLAY-GTKIVGGVTPGKG-GQT---ILGL----PVFNTVEEAVKETGANASVI 71 (293)
T ss_pred CceeecCCCeEEEeccccccchHHHHHHHHh-CCceeecccCCCC-ceE---EcCc----cHHHHHHHHHHhhCCCEEEE
Confidence 4434456789999995 88899999988877 8888887776431 111 1234 48999999999889999999
Q ss_pred cCCCcccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 80 PLPTSMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.|+..-++.+.+|+++| +.|+|=. =...+.+..++.+.+++.++.++
T Consensus 72 ~Vp~~~aadai~EAida~i~liv~IT-EgIP~~D~~~~~~~a~~~g~~ii 120 (293)
T COG0074 72 FVPPPFAADAILEAIDAGIKLVVIIT-EGIPVLDMLELKRYAREKGTRLI 120 (293)
T ss_pred ecCcHHHHHHHHHHHhCCCcEEEEEe-CCCCHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999 4444411 14578999999999999996654
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0024 Score=58.18 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=53.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH-----------HHHHcCCC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN-----------FAKANNFP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~e~l 69 (362)
.||+|||+|.||...+..+... +.+|+ ++|+++++++. +.++..+. ......+++++ +
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-g~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 80 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-GYDVV-MVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-L 80 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-CCceE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence 4799999999999999988777 56766 68999887742 22221111 02234567765 4
Q ss_pred cCCCCcEEEEcCCCccc--HHHHHHH
Q 018020 70 DDKDIDAVYLPLPTSMH--VKWAISV 93 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h--~~~~~~a 93 (362)
+ ++|+|++++|.... .++..+.
T Consensus 81 ~--~aDlVi~av~e~~~~k~~~~~~l 104 (282)
T PRK05808 81 K--DADLVIEAATENMDLKKKIFAQL 104 (282)
T ss_pred c--cCCeeeecccccHHHHHHHHHHH
Confidence 4 48999999987654 3444443
|
|
| >TIGR00871 zwf glucose-6-phosphate 1-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0002 Score=69.35 Aligned_cols=50 Identities=16% Similarity=0.226 Sum_probs=46.1
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcC------CeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKK------KHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~g------k~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
-.++++++||..|..++..+.++| ++|++|||++.|+++|++|.+...+.
T Consensus 110 n~lfYLA~PP~~f~~i~~~L~~~gl~~~g~~RIVvEKPFG~DL~SA~~Ln~~l~~~ 165 (482)
T TIGR00871 110 NRLFYLATPPSVFGTIIKQLKKHGLNEQGWSRVVVEKPFGHDLASAQELNKQLRAV 165 (482)
T ss_pred ceEEEEECChHHHHHHHHHHHHhCCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 369999999999999999999988 69999999999999999999988764
|
This is a well-studied enzyme family, with sequences available from well over 50 species. The trusted cutoff is set above the score for the Drosophila melanogaster CG7140 gene product, a homolog of unknown function. G6PD homologs from the bacteria Aquifex aeolicus and Helicobacter pylori lack several motifs well conserved most other members, were omitted from the seed alignment, and score well below the trusted cutoff. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0015 Score=60.06 Aligned_cols=80 Identities=16% Similarity=0.146 Sum_probs=55.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--C-----CcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--D-----AKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--~-----~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+|.+|..++..|.+. +.+|+ ++++++++.+.+.+. |+.. + ....++.+++ .++|+|++++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~---~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA-GHDVT-LVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAEL---GPQDLVILAV 74 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECChHHHHHHHHc-CCcccCCceeecccCCCChhHc---CCCCEEEEec
Confidence 4799999999999999988766 56655 667777777766543 4310 0 1224555554 4699999999
Q ss_pred CCcccHHHHHHHH
Q 018020 82 PTSMHVKWAISVA 94 (362)
Q Consensus 82 ~~~~h~~~~~~al 94 (362)
++....+++....
T Consensus 75 k~~~~~~~~~~l~ 87 (304)
T PRK06522 75 KAYQLPAALPSLA 87 (304)
T ss_pred ccccHHHHHHHHh
Confidence 9877666555443
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00067 Score=62.20 Aligned_cols=115 Identities=16% Similarity=0.235 Sum_probs=75.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-|++|||+|.+|...+..++.. ++++. ++|+++++.+ .++.+|.. ...++++.+.+. +.|+|+.++|+..-.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~-Ga~V~-v~~r~~~~~~-~~~~~G~~--~~~~~~l~~~l~--~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKAL-GANVT-VGARKSAHLA-RITEMGLS--PFHLSELAEEVG--KIDIIFNTIPALVLT 224 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEE-EEECCHHHHH-HHHHcCCe--eecHHHHHHHhC--CCCEEEECCChhhhh
Confidence 46999999999999999999887 57655 7899877644 34556642 122456667776 499999999875333
Q ss_pred HHHHHHHHcCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCEEE--EeeecccCh
Q 018020 88 KWAISVAQKKKHLLME---KPMALNVAEFDVILNACEENGVQLM--DGTMWVHNP 137 (362)
Q Consensus 88 ~~~~~al~~gk~V~~E---KP~~~~~~~~~~l~~~a~~~~~~~~--v~~~~r~~p 137 (362)
+-....++.| .++++ .|...+. +.++++|++.. .+.+-++.|
T Consensus 225 ~~~l~~~~~g-~vIIDla~~pggtd~-------~~a~~~Gv~~~~~~~lpg~vap 271 (296)
T PRK08306 225 KEVLSKMPPE-ALIIDLASKPGGTDF-------EYAEKRGIKALLAPGLPGKVAP 271 (296)
T ss_pred HHHHHcCCCC-cEEEEEccCCCCcCe-------eehhhCCeEEEEECCCCccCCH
Confidence 3333445555 44544 2333332 36788888776 566666755
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0038 Score=58.99 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=52.4
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH-HHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF-AKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
||+|||+|.||..++..+++. +.++. +++++++..+.. +...++.. ...+++++++++ +|+|++|+|+..-.+
T Consensus 2 ~I~iIG~GliG~siA~~L~~~-G~~v~-i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~--aDlVilavP~~~~~~ 75 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAA-GPDVF-IIGYDPSAAQLARALGFGVID--ELAADLQRAAAE--ADLIVLAVPVDATAA 75 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhc-CCCeE-EEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcC--CCEEEEeCCHHHHHH
Confidence 699999999999999999876 33333 444444332221 23344321 235677887764 999999999987666
Q ss_pred HHHHHH
Q 018020 89 WAISVA 94 (362)
Q Consensus 89 ~~~~al 94 (362)
++....
T Consensus 76 vl~~l~ 81 (359)
T PRK06545 76 LLAELA 81 (359)
T ss_pred HHHHHh
Confidence 665554
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0024 Score=58.27 Aligned_cols=78 Identities=18% Similarity=0.181 Sum_probs=54.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH-----------HHHHcCCC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN-----------FAKANNFP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~e~l 69 (362)
-||+|||+|.||...+..+... +++|+ ++|++++..+. +.++..+. ......+|+++ +
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~ 82 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARA-GVDVL-VFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-F 82 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-h
Confidence 3899999999999999888766 78866 89999987665 22222211 01225677744 5
Q ss_pred cCCCCcEEEEcCCCcccHHHHH
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAI 91 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~ 91 (362)
+ ++|+|+-+.|.........
T Consensus 83 ~--~~d~ViEav~E~~~~K~~l 102 (286)
T PRK07819 83 A--DRQLVIEAVVEDEAVKTEI 102 (286)
T ss_pred C--CCCEEEEecccCHHHHHHH
Confidence 4 4899999998887644443
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0018 Score=61.26 Aligned_cols=71 Identities=18% Similarity=0.248 Sum_probs=53.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
-.+|||||+|.||+..++.++.. +++|. ++|++... ....+..++ ..+.+++|+++. .|+|++++|....-
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~f-G~~V~-~~dr~~~~-~~~~~~~g~----~~~~~l~ell~~--aDvV~l~lPlt~~T 262 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPF-DVKLH-YTDRHRLP-EEVEQELGL----TYHVSFDSLVSV--CDVVTIHCPLHPET 262 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EECCCCCc-hhhHhhcCc----eecCCHHHHhhc--CCEEEEcCCCCHHH
Confidence 35899999999999999999876 78876 67886522 223344453 356899999986 89999999976543
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00092 Score=60.42 Aligned_cols=118 Identities=20% Similarity=0.200 Sum_probs=73.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-++.|+|+|..++..+..|.+..-.+|+ |++|+.++++++++.++-........+..++-...+.|++|.+||...+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~-V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~ 205 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRIT-VVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGP 205 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEE-EEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCC
Confidence 5799999999999999999888434544 999999999999998863110011223333322115899999999876654
Q ss_pred H----HH-HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 89 W----AI-SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 89 ~----~~-~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
. +. ..+.. .++..| +...+. --.+++.|+++|.+..-|.
T Consensus 206 ~~~~~~~~~~l~~-~~~v~D--~vY~P~-~TplL~~A~~~G~~~idGl 249 (283)
T COG0169 206 EGDSPVPAELLPK-GAIVYD--VVYNPL-ETPLLREARAQGAKTIDGL 249 (283)
T ss_pred CCCCCCcHHhcCc-CCEEEE--eccCCC-CCHHHHHHHHcCCeEECcH
Confidence 2 12 22222 344433 122211 2346667777776655553
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=64.56 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=60.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHHHHhcCCCCcEEEEcCCCc--
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYEALLDDKDIDAVYLPLPTS-- 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-- 84 (362)
..+|+|||+|.||...+..+... ++.-+.+++|+.++++.++++++ ..-.+..+++..+.+. +.|+|+.+|+..
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~-G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~--~aDVVIsAT~s~~p 342 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSK-GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAA--EADVVFTSTSSETP 342 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHh--cCCEEEEccCCCCC
Confidence 56899999999999999988876 55445689999999999999874 2100123456666665 499999998643
Q ss_pred -ccHHHHHHHH
Q 018020 85 -MHVKWAISVA 94 (362)
Q Consensus 85 -~h~~~~~~al 94 (362)
...+++..+.
T Consensus 343 vI~~e~l~~~~ 353 (519)
T PLN00203 343 LFLKEHVEALP 353 (519)
T ss_pred eeCHHHHHHhh
Confidence 3455665554
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0012 Score=61.52 Aligned_cols=96 Identities=6% Similarity=0.134 Sum_probs=65.5
Q ss_pred EEEEEeccHHHHHHHHHHhcCC-------CcEEEEEEcC-----CHHHHHHHHHHc-------C--CCCCCcccCCHHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAP-------NAVLSAVASR-----SLEKATNFAKAN-------N--FPPDAKVYGSYEAL 68 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~-------~~~vv~v~d~-----~~~~~~~~~~~~-------~--~~~~~~~~~~~~e~ 68 (362)
||+|||+|.+|...+..+.+.. +.+|. ++.+ +++-.+.+.+.. + +|++..+.+|++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~-lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~ea 79 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVR-MWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEE-EEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHH
Confidence 6899999999999988886532 14433 5666 445455444332 2 24455677899999
Q ss_pred hcCCCCcEEEEcCCCcccHHHHHHH---HHcCCe-EEEeCCCCC
Q 018020 69 LDDKDIDAVYLPLPTSMHVKWAISV---AQKKKH-LLMEKPMAL 108 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h~~~~~~a---l~~gk~-V~~EKP~~~ 108 (362)
+++ .|+|++++|+..+.+++.+. ++.++. |.+-|-+..
T Consensus 80 l~~--ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 80 AKG--ADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred Hhc--CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 986 89999999999998887765 344444 446666543
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0024 Score=55.63 Aligned_cols=114 Identities=16% Similarity=0.128 Sum_probs=74.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH----------HHHHHHHHHcCCCCC-CcccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL----------EKATNFAKANNFPPD-AKVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~----------~~~~~~~~~~~~~~~-~~~~~~~~e~l~~~~~D 75 (362)
+..||+|.|+|..|...+..|.+. +..+|+|+|.+. +..+...+..++..- ..-+.+-++++.. ++|
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~-G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~D 99 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEE-GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGL-DVD 99 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceec-ccc
Confidence 468999999999999999999877 799999999988 766655555443210 0012244667765 899
Q ss_pred EEEEcCCCcc-cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 76 AVYLPLPTSM-HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 76 ~V~i~~~~~~-h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+++-|++... +.+. +.+.+..+++|+-=.....++.+++ ++.|+.+.
T Consensus 100 VlipaA~~~~i~~~~---a~~l~a~~V~e~AN~p~t~~a~~~L---~~~Gi~v~ 147 (217)
T cd05211 100 IFAPCALGNVIDLEN---AKKLKAKVVAEGANNPTTDEALRIL---HERGIVVA 147 (217)
T ss_pred EEeeccccCccChhh---HhhcCccEEEeCCCCCCCHHHHHHH---HHCCcEEE
Confidence 9999887663 3322 3334577889873222222554444 66676553
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00066 Score=65.00 Aligned_cols=72 Identities=22% Similarity=0.236 Sum_probs=57.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..||.|||+|.||...+..+... ++.-+.|++|+.++++.++++++ .. +..++++.+.+.. .|+|+.||+.+
T Consensus 181 ~kkvlviGaG~~a~~va~~L~~~-g~~~I~V~nRt~~ra~~La~~~~~~~--~~~~~~l~~~l~~--aDiVI~aT~a~ 253 (414)
T PRK13940 181 SKNVLIIGAGQTGELLFRHVTAL-APKQIMLANRTIEKAQKITSAFRNAS--AHYLSELPQLIKK--ADIIIAAVNVL 253 (414)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHhcCCe--EecHHHHHHHhcc--CCEEEECcCCC
Confidence 45899999999999999999876 55456699999999999999986 32 2235666666775 99999999874
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0015 Score=63.06 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=61.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc--
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM-- 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~-- 85 (362)
..+|+|||+|.||...+..+... ++.-+.++++++++++.+++++|.. +..+.++.+.+. +.|+|+.+|+...
T Consensus 182 ~~~vlViGaG~iG~~~a~~L~~~-G~~~V~v~~r~~~ra~~la~~~g~~--~~~~~~~~~~l~--~aDvVI~aT~s~~~~ 256 (423)
T PRK00045 182 GKKVLVIGAGEMGELVAKHLAEK-GVRKITVANRTLERAEELAEEFGGE--AIPLDELPEALA--EADIVISSTGAPHPI 256 (423)
T ss_pred CCEEEEECchHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCc--EeeHHHHHHHhc--cCCEEEECCCCCCcE
Confidence 46899999999999999888766 5644568999999999999998742 222355556665 5899999998653
Q ss_pred -cHHHHHHHHH
Q 018020 86 -HVKWAISVAQ 95 (362)
Q Consensus 86 -h~~~~~~al~ 95 (362)
..+.+..+++
T Consensus 257 i~~~~l~~~~~ 267 (423)
T PRK00045 257 IGKGMVERALK 267 (423)
T ss_pred EcHHHHHHHHh
Confidence 3555666553
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.003 Score=65.55 Aligned_cols=117 Identities=11% Similarity=0.061 Sum_probs=72.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.||+|||+|.||...+..+.+.. ..+ +.++|+++++.+.+ .++|.. ....+++++.++. .|+|++++|+..-.
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~-V~~~d~~~~~~~~a-~~~g~~--~~~~~~~~~~~~~--aDvVilavp~~~~~ 77 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLARE-VVAVDRRAKSLELA-VSLGVI--DRGEEDLAEAVSG--ADVIVLAVPVLAME 77 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCE-EEEEECChhHHHHH-HHCCCC--CcccCCHHHHhcC--CCEEEECCCHHHHH
Confidence 57999999999999999998763 245 44689998876654 456642 1235678887774 89999999987555
Q ss_pred HHHHHHHH--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 88 KWAISVAQ--KKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 88 ~~~~~al~--~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
+++....+ ....++++-- +....-.+++.+......+.++.+++
T Consensus 78 ~vl~~l~~~~~~~~ii~d~~-svk~~~~~~l~~~~~~~~~r~~~~hP 123 (735)
T PRK14806 78 KVLADLKPLLSEHAIVTDVG-STKGNVVDAARAVFGELPAGFVPGHP 123 (735)
T ss_pred HHHHHHHHhcCCCcEEEEcC-CCchHHHHHHHHhccccCCeEEecCC
Confidence 44444332 2245666532 33333344444443333445544444
|
|
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=61.46 Aligned_cols=98 Identities=17% Similarity=0.107 Sum_probs=68.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHH---cCCCC-CCc---------------cc--CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKA---NNFPP-DAK---------------VY--GS 64 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~---~~~~~-~~~---------------~~--~~ 64 (362)
++||||.|+|.||+..++.+...++++|++|-|+ +.+.+..+-+- +|.-+ .+. ++ .+
T Consensus 85 ~~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~~~d 164 (421)
T PLN02272 85 KTKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTSKRD 164 (421)
T ss_pred ceEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEecCC
Confidence 4799999999999988888765568999999995 44443333221 12111 111 11 12
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++++ ..+.++|+|+-||......+.+...+++| |.|++..|
T Consensus 165 p~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap 207 (421)
T PLN02272 165 PAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAP 207 (421)
T ss_pred cccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCC
Confidence 3332 22237999999999999999999999999 88999988
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0017 Score=57.04 Aligned_cols=114 Identities=20% Similarity=0.201 Sum_probs=77.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCCCCCC--cccCCHHHHhcCCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNFPPDA--KVYGSYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~ 74 (362)
+.+||+|.|+|..|+..+..|.+. +++|++|+|. +.+...+..++.|.-.+. ..+-+.++++.. ++
T Consensus 30 ~~~~v~I~G~G~VG~~~a~~L~~~-g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~-~~ 107 (227)
T cd01076 30 AGARVAIQGFGNVGSHAARFLHEA-GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL-DC 107 (227)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee-cc
Confidence 468999999999999999988776 8999999998 888877777766521110 011245666665 79
Q ss_pred cEEEEcCCCcccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
|+++=|++...--+-....+ ...+++|- |+ + .++. +..+++|+.+...
T Consensus 108 Dvlip~a~~~~i~~~~~~~l--~a~~I~egAN~~~--t-~~a~---~~L~~rGi~~~PD 158 (227)
T cd01076 108 DILIPAALENQITADNADRI--KAKIIVEAANGPT--T-PEAD---EILHERGVLVVPD 158 (227)
T ss_pred cEEEecCccCccCHHHHhhc--eeeEEEeCCCCCC--C-HHHH---HHHHHCCCEEECh
Confidence 99998887765433333333 36778875 44 2 3333 3446778877544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=55.33 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=70.2
Q ss_pred ceeEEEEEeccHHHHHHH-HHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHHhcC---CCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~-~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~ 81 (362)
.+.||+|||.|++|...+ +.|+.-...+..+.+..+++. .-+.+.++|++ ...+..+-+|.. +++|+|+-+|
T Consensus 3 sk~kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~---tt~egv~~ll~~p~~~di~lvfdat 79 (310)
T COG4569 3 SKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVA---TTHEGVIGLLNMPEFADIDLVFDAT 79 (310)
T ss_pred CcceEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCc---chhhHHHHHHhCCCCCCcceEEecc
Confidence 489999999999999764 455543446655555544432 23335667876 455667777764 5788999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCC
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMA 107 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~ 107 (362)
....|...+.+..++|...+-=.|.+
T Consensus 80 sa~~h~~~a~~~ae~gi~~idltpaa 105 (310)
T COG4569 80 SAGAHVKNAAALAEAGIRLIDLTPAA 105 (310)
T ss_pred ccchhhcchHhHHhcCCceeecchhc
Confidence 99999999999999998876545543
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00082 Score=63.67 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=61.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC-CCCcccCCHHHH-hcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP-PDAKVYGSYEAL-LDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~-~~~~~~~~~~e~-l~~~~~D~V~i~~~ 82 (362)
.++||+|||+ |..|...++.|.++|.++|+.+... ....+.+...+- +. .....+.+.+.. + .++|+|+.++|
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~-~saG~~i~~~~~~l~~~~~~~~~~~~~~~~--~~~DvVf~Alp 113 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD-RKAGQSFGSVFPHLITQDLPNLVAVKDADF--SDVDAVFCCLP 113 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh-hhcCCCchhhCccccCccccceecCCHHHh--cCCCEEEEcCC
Confidence 4679999997 8889999999999999999988763 333333333220 00 001112233322 3 36999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+....+++.. +++|+.|+
T Consensus 114 ~~~s~~i~~~-~~~g~~VI 131 (381)
T PLN02968 114 HGTTQEIIKA-LPKDLKIV 131 (381)
T ss_pred HHHHHHHHHH-HhCCCEEE
Confidence 9988888888 47886555
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=60.01 Aligned_cols=120 Identities=19% Similarity=0.205 Sum_probs=74.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCC-Cccc--CCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPD-AKVY--GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~-~~~~--~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-++.|+|+|..|+..+..+.+. ++.-+.|++|+.+++++++++++- +.. +... .++++.+. +.|+|+.+||.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~-g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~--~~divINaTp~ 204 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIA--AADGVVNATPM 204 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHC-CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHh--hcCEEEEcCCC
Confidence 4799999999999988888776 555566999999999999887631 100 0111 12233443 48999999996
Q ss_pred cccH----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 84 SMHV----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 84 ~~h~----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
..+. .+-...+..+ +++.| +..++.+ -.+++.|++.|.+..-|...-.
T Consensus 205 Gm~~~~~~~~~~~~l~~~-~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~MLv 256 (283)
T PRK14027 205 GMPAHPGTAFDVSCLTKD-HWVGD--VVYMPIE-TELLKAARALGCETLDGTRMAI 256 (283)
T ss_pred CCCCCCCCCCCHHHcCCC-cEEEE--cccCCCC-CHHHHHHHHCCCEEEccHHHHH
Confidence 6532 1112233333 34444 2222211 4567778888887776654443
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00094 Score=61.73 Aligned_cols=64 Identities=22% Similarity=0.147 Sum_probs=51.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||...+..+.+. +.+|. ++++++. .++++++++ .|+|++++|...+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-G~~V~-~~~r~~~------------------~~~~~~~~~--advvi~~vp~~~~~ 61 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-GHRVR-VWSRRSG------------------LSLAAVLAD--ADVIVSAVSMKGVR 61 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-CCEEE-EEeCCCC------------------CCHHHHHhc--CCEEEEECChHHHH
Confidence 68999999999999999999866 56765 8887642 367788774 89999999997666
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
.++...
T Consensus 62 ~v~~~l 67 (308)
T PRK14619 62 PVAEQV 67 (308)
T ss_pred HHHHHH
Confidence 666544
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0065 Score=58.99 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccHHHHHHHH---
Q 018020 19 IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHVKWAISVA--- 94 (362)
Q Consensus 19 ~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~~~~~~al--- 94 (362)
||..++..|.++ +++|+ |+||++++.+.+.++.+-..++..+.|++++.+. +.+|+|+++.|.....+-+..-+
T Consensus 1 MG~~mA~nL~~~-G~~V~-v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~ 78 (459)
T PRK09287 1 MGKNLALNIASH-GYTVA-VYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPL 78 (459)
T ss_pred CcHHHHHHHHhC-CCeEE-EECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhc
Confidence 577888888877 78865 8999999999998863311224678999999875 35899999999987766665433
Q ss_pred -HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 95 -QKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 95 -~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
+.| .++++-- +.+..+..++.+.++++|+.+
T Consensus 79 l~~G-diiID~g-n~~~~~t~~~~~~l~~~Gi~f 110 (459)
T PRK09287 79 LEKG-DIIIDGG-NSNYKDTIRREKELAEKGIHF 110 (459)
T ss_pred CCCC-CEEEECC-CCCHHHHHHHHHHHHhcCCeE
Confidence 334 5777732 468999999999998887654
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.002 Score=62.06 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=64.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc-
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH- 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h- 86 (362)
.-+|+|||+|.+|...+..+... ++.-+.+++++.++++.++++++.. ...++++.+.+. +.|+|+.+|+...+
T Consensus 180 ~~~VlViGaG~iG~~~a~~L~~~-G~~~V~v~~rs~~ra~~la~~~g~~--~i~~~~l~~~l~--~aDvVi~aT~s~~~i 254 (417)
T TIGR01035 180 GKKALLIGAGEMGELVAKHLLRK-GVGKILIANRTYERAEDLAKELGGE--AVKFEDLEEYLA--EADIVISSTGAPHPI 254 (417)
T ss_pred CCEEEEECChHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCe--EeeHHHHHHHHh--hCCEEEECCCCCCce
Confidence 35899999999999999999876 5444558899999999999988632 122356666666 49999999876544
Q ss_pred --HHHHHHHHHcC-Ce-EEEeC
Q 018020 87 --VKWAISVAQKK-KH-LLMEK 104 (362)
Q Consensus 87 --~~~~~~al~~g-k~-V~~EK 104 (362)
.+.+..++... ++ ++++=
T Consensus 255 i~~e~l~~~~~~~~~~~~viDl 276 (417)
T TIGR01035 255 VSKEDVERALRERTRPLFIIDI 276 (417)
T ss_pred EcHHHHHHHHhcCCCCeEEEEe
Confidence 45555554432 22 55543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0016 Score=61.22 Aligned_cols=99 Identities=9% Similarity=0.191 Sum_probs=67.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC------CcEEEEEEcCCHH-----HHHHHHHHc---------CCCCCCcccCCHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP------NAVLSAVASRSLE-----KATNFAKAN---------NFPPDAKVYGSYE 66 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~------~~~vv~v~d~~~~-----~~~~~~~~~---------~~~~~~~~~~~~~ 66 (362)
+++||+|||+|.+|...+..+.+.. +.+ |-++.++++ ..+.+.+.. .+|+++...+|++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~-V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ 88 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNE-VRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLK 88 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCe-EEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHH
Confidence 4689999999999999998887552 134 335666654 244443321 2344556678999
Q ss_pred HHhcCCCCcEEEEcCCCcccHHHHHHHHH-----cCCe-EEEeCCCCC
Q 018020 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQ-----KKKH-LLMEKPMAL 108 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~~h~~~~~~al~-----~gk~-V~~EKP~~~ 108 (362)
+++++ .|+|++++|+....+++..... .+.. |.+-|-+..
T Consensus 89 eav~~--aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~ 134 (365)
T PTZ00345 89 EAVED--ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIV 134 (365)
T ss_pred HHHhc--CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCccc
Confidence 98886 8999999999998888877643 2223 336666543
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0037 Score=58.84 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=55.5
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+.||+|||. |.||..++..+++..+.+|. .+|++. ....+.++.+.. +|+|++|+|...-
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~-g~D~~d----------------~~~~~~~~~v~~--aDlVilavPv~~~ 64 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVI-GHDPAD----------------PGSLDPATLLQR--ADVLIFSAPIRHT 64 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEE-EEcCCc----------------cccCCHHHHhcC--CCEEEEeCCHHHH
Confidence 689999999 99999999999865577876 477641 124467788764 9999999999999
Q ss_pred HHHHHHHHH
Q 018020 87 VKWAISVAQ 95 (362)
Q Consensus 87 ~~~~~~al~ 95 (362)
.+++.+...
T Consensus 65 ~~~l~~l~~ 73 (370)
T PRK08818 65 AALIEEYVA 73 (370)
T ss_pred HHHHHHHhh
Confidence 888888765
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0047 Score=58.18 Aligned_cols=136 Identities=13% Similarity=0.077 Sum_probs=82.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC-----HHHHhcC---CCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS-----YEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~---~~~D~V~i~~ 81 (362)
+|+|+|+|.+|.-.+..++..+-.+|+ +.|++++|++.+.+..+.. .+... ..++++. ..+|+|+-++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi-v~d~~~~Rl~~A~~~~g~~---~~~~~~~~~~~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVI-VVDRSPERLELAKEAGGAD---VVVNPSEDDAGAEILELTGGRGADVVIEAV 246 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEE-EeCCCHHHHHHHHHhCCCe---EeecCccccHHHHHHHHhCCCCCCEEEECC
Confidence 799999999999888888777545555 6699998887665546532 12221 1122222 3699999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHH-HHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEF-DVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~-~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
........+.++++.|-.|.. ++....+. ..-....-.+.+.+.-+........+..+.+++ .+|++-
T Consensus 247 G~~~~~~~ai~~~r~gG~v~~---vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll-~~g~i~ 315 (350)
T COG1063 247 GSPPALDQALEALRPGGTVVV---VGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLL-ASGKID 315 (350)
T ss_pred CCHHHHHHHHHHhcCCCEEEE---EeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHH-HcCCCC
Confidence 977777788888888755443 22221111 111222333444544332222334677788888 777663
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0029 Score=59.04 Aligned_cols=69 Identities=12% Similarity=0.170 Sum_probs=50.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
-++|||||+|.||+..+..+.+.-+++|. ++|++..... .. .+ ...+++++++.. .|+|++++|.....
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~-~~d~~~~~~~---~~-~~----~~~~~l~ell~~--aDvIvl~lP~t~~t 214 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVV-AYDPFPNAKA---AT-YV----DYKDTIEEAVEG--ADIVTLHMPATKYN 214 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEE-EECCCccHhH---Hh-hc----cccCCHHHHHHh--CCEEEEeCCCCcch
Confidence 46899999999999999988333367766 5788764321 11 11 345699999985 89999999986543
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0053 Score=55.55 Aligned_cols=83 Identities=18% Similarity=0.127 Sum_probs=53.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.++|+|+|+|.||.-+++.+++....-.+...|++....+ .+.+.|+.. .+..+. ......+.|+|++++|...-.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~-~a~~lgv~d--~~~~~~-~~~~~~~aD~VivavPi~~~~ 78 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLK-AALELGVID--ELTVAG-LAEAAAEADLVIVAVPIEATE 78 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHH-HHhhcCccc--ccccch-hhhhcccCCEEEEeccHHHHH
Confidence 6899999999999999999987733221333445443332 344466431 111222 122233589999999998888
Q ss_pred HHHHHHH
Q 018020 88 KWAISVA 94 (362)
Q Consensus 88 ~~~~~al 94 (362)
+++.+..
T Consensus 79 ~~l~~l~ 85 (279)
T COG0287 79 EVLKELA 85 (279)
T ss_pred HHHHHhc
Confidence 8877766
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0016 Score=61.69 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=52.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++....+ ..++.|+ ..++++++++.. .|+|++++|....
T Consensus 199 gktVGIVG~G~IG~~vA~~L~af-G~~V~-~~d~~~~~~~-~~~~~g~----~~~~~l~ell~~--sDvV~l~lPlt~~ 268 (386)
T PLN03139 199 GKTVGTVGAGRIGRLLLQRLKPF-NCNLL-YHDRLKMDPE-LEKETGA----KFEEDLDAMLPK--CDVVVINTPLTEK 268 (386)
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-CCEEE-EECCCCcchh-hHhhcCc----eecCCHHHHHhh--CCEEEEeCCCCHH
Confidence 35899999999999999999876 88876 5888743222 2334453 346799999975 9999999986544
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.003 Score=58.77 Aligned_cols=66 Identities=18% Similarity=0.274 Sum_probs=51.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-++|||||+|.||+..+..++.. +++|+ ++|++++....+ . ....+++++++. .|+|++++|....
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~-G~~V~-~~d~~~~~~~~~-----~----~~~~~l~ell~~--aDiVil~lP~t~~ 211 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGF-GATIT-AYDAYPNKDLDF-----L----TYKDSVKEAIKD--ADIISLHVPANKE 211 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EEeCChhHhhhh-----h----hccCCHHHHHhc--CCEEEEeCCCcHH
Confidence 45899999999999999999876 78877 678886543221 1 235689999986 8999999998753
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00099 Score=62.26 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=62.4
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~ 82 (362)
.++||+|||+ |..|...++.|.+ +|.+++..+.+.... -+.+.. .+. . ..+.+.+ +.++ ++|+|+.++|
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsa-Gk~~~~-~~~--~-~~v~~~~~~~~~--~~D~vf~a~p 78 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSA-GKKVTF-EGR--D-YTVEELTEDSFD--GVDIALFSAG 78 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCC-CCeeee-cCc--e-eEEEeCCHHHHc--CCCEEEECCC
Confidence 4789999997 7789999999877 899999888765321 111111 121 1 2233333 3344 5999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+....+++.++.++|+.|+
T Consensus 79 ~~~s~~~~~~~~~~g~~VI 97 (344)
T PLN02383 79 GSISKKFGPIAVDKGAVVV 97 (344)
T ss_pred cHHHHHHHHHHHhCCCEEE
Confidence 9999999999999997665
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0053 Score=56.25 Aligned_cols=72 Identities=15% Similarity=0.234 Sum_probs=49.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-----c--------CC-C--------CCCcccCCHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-----N--------NF-P--------PDAKVYGSYE 66 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-----~--------~~-~--------~~~~~~~~~~ 66 (362)
-||+|||+|.||...+..+... +.+|+ ++|+++++.++..+. + +. + ......+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-GYDVT-IVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-
Confidence 4799999999999999888766 67755 789999877643221 1 11 0 001234455
Q ss_pred HHhcCCCCcEEEEcCCCcc
Q 018020 67 ALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~~ 85 (362)
+.++ ++|+|+.++|+..
T Consensus 81 ~~~~--~aDlVieav~e~~ 97 (291)
T PRK06035 81 ESLS--DADFIVEAVPEKL 97 (291)
T ss_pred HHhC--CCCEEEEcCcCcH
Confidence 3444 4899999999886
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0024 Score=58.77 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=54.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----C-----CCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----P-----DAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~-----~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||+|||+|.+|..++..|.+. +.+|. ++++ +++.+.+.+ .|+. . .....++.++++. ++|+|++
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~-g~~V~-~~~r-~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~d~vil 74 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA-GRDVT-FLVR-PKRAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTG--PFDLVIL 74 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC-CCceE-EEec-HHHHHHHHh-CCeEEEeCCCeEEecceeecCHHHccC--CCCEEEE
Confidence 5799999999999999998766 56655 5667 666766654 3321 0 0112445555543 5899999
Q ss_pred cCCCcccHHHHHHHH
Q 018020 80 PLPTSMHVKWAISVA 94 (362)
Q Consensus 80 ~~~~~~h~~~~~~al 94 (362)
++++....+++....
T Consensus 75 avk~~~~~~~~~~l~ 89 (305)
T PRK12921 75 AVKAYQLDAAIPDLK 89 (305)
T ss_pred EecccCHHHHHHHHH
Confidence 999987777665554
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0023 Score=57.29 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=56.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|+|||+|+-|..|+..|++. +++|+... |......+-|++-|+. .-+++|+... .|+|.+.+|...|.
T Consensus 18 gK~iaIIGYGsQG~ahalNLRDS-GlnViiGl-r~g~~s~~kA~~dGf~-----V~~v~ea~k~--ADvim~L~PDe~q~ 88 (338)
T COG0059 18 GKKVAIIGYGSQGHAQALNLRDS-GLNVIIGL-RKGSSSWKKAKEDGFK-----VYTVEEAAKR--ADVVMILLPDEQQK 88 (338)
T ss_pred CCeEEEEecChHHHHHHhhhhhc-CCcEEEEe-cCCchhHHHHHhcCCE-----eecHHHHhhc--CCEEEEeCchhhHH
Confidence 34899999999999999999987 66654332 2222224445566652 4588898886 99999999999998
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
++....
T Consensus 89 ~vy~~~ 94 (338)
T COG0059 89 EVYEKE 94 (338)
T ss_pred HHHHHH
Confidence 877743
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0016 Score=60.57 Aligned_cols=87 Identities=6% Similarity=0.179 Sum_probs=61.0
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcE---EEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAV---LSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLP 80 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~---vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~ 80 (362)
+.+||||||+ |..|..+++.|.++|.++ +..+.+.. ..-+.+ .++. .+ ..+. +.+++ . ++|+|+.+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~-saGk~~--~~~~-~~-l~v~~~~~~~~-~--~~Divf~a 75 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKR-SAGKTV--QFKG-RE-IIIQEAKINSF-E--GVDIAFFS 75 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcc-cCCCCe--eeCC-cc-eEEEeCCHHHh-c--CCCEEEEC
Confidence 4689999997 888999999999999988 65555442 112221 1111 11 1222 33333 3 59999999
Q ss_pred CCCcccHHHHHHHHHcCCeEE
Q 018020 81 LPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~ 101 (362)
+|+....+++..+.++|..|+
T Consensus 76 ~~~~~s~~~~~~~~~~G~~VI 96 (347)
T PRK06728 76 AGGEVSRQFVNQAVSSGAIVI 96 (347)
T ss_pred CChHHHHHHHHHHHHCCCEEE
Confidence 999999999999999997666
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0017 Score=60.59 Aligned_cols=67 Identities=25% Similarity=0.270 Sum_probs=51.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.||+..++.++.. +++|. ++|++.... ....++. .+.+++++++. .|+|++++|...
T Consensus 150 gktvgIiG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~--~~~~~~~-----~~~~l~ell~~--aDiV~l~lP~t~ 216 (333)
T PRK13243 150 GKTIGIIGFGRIGQAVARRAKGF-GMRIL-YYSRTRKPE--AEKELGA-----EYRPLEELLRE--SDFVSLHVPLTK 216 (333)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCCChh--hHHHcCC-----EecCHHHHHhh--CCEEEEeCCCCh
Confidence 36899999999999999999877 68876 678875432 2334443 25689999986 899999999754
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.004 Score=54.70 Aligned_cols=113 Identities=19% Similarity=0.203 Sum_probs=71.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcE--EEEEEcCC----HHHH-------HHHHHHcCCCCCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAV--LSAVASRS----LEKA-------TNFAKANNFPPDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~--vv~v~d~~----~~~~-------~~~~~~~~~~~~~~~~~~~~e~l~~~~ 73 (362)
+..||.|+|+|.+|...+..+... ++. -+.++|++ .++. +.++++++.. ....++.+.+..
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~---~~~~~l~~~l~~-- 97 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE---KTGGTLKEALKG-- 97 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccC---cccCCHHHHHhc--
Confidence 356999999999999988888766 555 56799998 4443 5566666421 122367677764
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEe
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDG 130 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~ 130 (362)
+|+|+-+|+.....+...+.+..+ +++. |+. ++. ...+.+.|++.|.+ +..|
T Consensus 98 ~dvlIgaT~~G~~~~~~l~~m~~~-~ivf--~ls-nP~-~e~~~~~A~~~ga~i~a~G 150 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIKKMAKD-PIVF--ALA-NPV-PEIWPEEAKEAGADIVATG 150 (226)
T ss_pred CCEEEeCCCCCCCCHHHHHhhCCC-CEEE--EeC-CCC-CcCCHHHHHHcCCcEEEeC
Confidence 899999998655444444444433 4333 233 221 13466777777774 5555
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=54.78 Aligned_cols=115 Identities=17% Similarity=0.182 Sum_probs=78.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEc----CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLP----LP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~----~~ 82 (362)
+..||+||++-||+..+..+.++ ++. |+|++|+.++.++|-++.+-.++..-+.|++|+++. ..|--|++. +|
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~-G~~-VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~ 80 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADH-GYT-VAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTP 80 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhc-Cce-EEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCc
Confidence 56799999999999999999888 777 559999999999998887633455668899998765 345555443 33
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
-+.--+.+...|+.| .|+++-- .....+..+-.+...+.|+.
T Consensus 81 VD~~I~~L~p~Le~g-DIiIDGG-Ns~y~DT~RR~~eL~~~Gi~ 122 (473)
T COG0362 81 VDAVIEQLLPLLEKG-DIIIDGG-NSHYKDTIRRNKELSEKGIL 122 (473)
T ss_pred HHHHHHHHHhhcCCC-CEEEeCC-CcCCchHHHHHHHHHhcCCe
Confidence 344455555555555 5566533 34455555555555555654
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0045 Score=56.46 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=75.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC---HHHHHHHHHHcCCCCCC-cccCCHHHH--h--cCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS---LEKATNFAKANNFPPDA-KVYGSYEAL--L--DDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~---~~~~~~~~~~~~~~~~~-~~~~~~~e~--l--~~~~~D~V~i~ 80 (362)
-++.|||+|..++..+..+... ++.-+.|++|+ .++++.++++++...+. ..+.++++. + ...+.|+|+.+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~-g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEEC
Confidence 4799999999988877777666 55456699998 46888888877421110 112333321 1 11358999999
Q ss_pred CCCcccHH----H--HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHH
Q 018020 81 LPTSMHVK----W--AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQ 141 (362)
Q Consensus 81 ~~~~~h~~----~--~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~ 141 (362)
||...... . -...++.+ ++++| +..++.+ ..+++.|++.|.+..-|.....+.....
T Consensus 204 Tp~Gm~~~~~~~~~~~~~~l~~~-~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~ML~~Qa~~~ 266 (288)
T PRK12749 204 TKVGMKPLENESLVNDISLLHPG-LLVTE--CVYNPHM-TKLLQQAQQAGCKTIDGYGMLLWQGAEQ 266 (288)
T ss_pred CCCCCCCCCCCCCCCcHHHCCCC-CEEEE--ecCCCcc-CHHHHHHHHCCCeEECCHHHHHHHHHHH
Confidence 99765431 1 11223333 33333 2233322 4677788888888877755444333333
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0019 Score=60.39 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=60.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~~~ 84 (362)
+||+|||+ |..|...++.|.+ +|.++++++.... +..+.+. ++. .. ..+.+.++ .++ ++|+|+.|+|..
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~-~~g~~l~--~~g-~~-i~v~d~~~~~~~--~vDvVf~A~g~g 74 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASAR-SAGKELS--FKG-KE-LKVEDLTTFDFS--GVDIALFSAGGS 74 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccc-cCCCeee--eCC-ce-eEEeeCCHHHHc--CCCEEEECCChH
Confidence 68999997 7889999999987 7889999887542 2222221 111 11 22333332 233 699999999999
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
...+++.+++++|..|+
T Consensus 75 ~s~~~~~~~~~~G~~VI 91 (334)
T PRK14874 75 VSKKYAPKAAAAGAVVI 91 (334)
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 99999999999998444
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.037 Score=51.84 Aligned_cols=130 Identities=11% Similarity=0.072 Sum_probs=79.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhcCC-CCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLDDK-DIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~~~-~~D~V~i~~~~ 83 (362)
-+|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +++++|.. .++ .+++++.... .+|+|+-++..
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~-G~~~Vi~~~~~~~~~~-~a~~lGa~---~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTL-GAAEIVCADVSPRSLS-LAREMGAD---KLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEEEeCCHHHHH-HHHHcCCc---EEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 3789999999999888888777 6643446677877665 56678753 122 2455555432 48999999987
Q ss_pred cccHHHHHHHHHcCCeE-EEeCC---CCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 84 SMHVKWAISVAQKKKHL-LMEKP---MALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V-~~EKP---~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
....+.+..+++.|-.+ ++.-+ ...+. .... .+++.+.-.+ .+...+.++-+++ ++|.|-
T Consensus 246 ~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~------~~~~-~k~~~i~g~~--~~~~~~~~~~~l~-~~g~i~ 309 (343)
T PRK09880 246 PSSINTCLEVTRAKGVMVQVGMGGAPPEFPM------MTLI-VKEISLKGSF--RFTEEFNTAVSWL-ANGVIN 309 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEEccCCCCCccCH------HHHH-hCCcEEEEEe--eccccHHHHHHHH-HcCCCC
Confidence 66667778888877554 44322 12222 1222 2344443222 3344577778888 667663
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0051 Score=54.04 Aligned_cols=91 Identities=16% Similarity=0.177 Sum_probs=61.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-HcCCCCCCcccCCHHHHhcC---CCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-ANNFPPDAKVYGSYEALLDD---KDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~~~~ 84 (362)
|+|.|||+|..|...++.|.+. +.+++ +.|+++++++.+.. +++.. .+....+-.+.|.+ .+.|+++++|.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~-g~~Vv-~Id~d~~~~~~~~~~~~~~~-~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE-GHNVV-LIDRDEERVEEFLADELDTH-VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC-CCceE-EEEcCHHHHHHHhhhhcceE-EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 5799999999999999999877 56655 67889998887444 45432 11122333344433 5799999999997
Q ss_pred ccHHHHHH-HHH-cC-CeEEE
Q 018020 85 MHVKWAIS-VAQ-KK-KHLLM 102 (362)
Q Consensus 85 ~h~~~~~~-al~-~g-k~V~~ 102 (362)
.-..++.. +++ .| +.|+.
T Consensus 78 ~~N~i~~~la~~~~gv~~via 98 (225)
T COG0569 78 EVNSVLALLALKEFGVPRVIA 98 (225)
T ss_pred HHHHHHHHHHHHhcCCCcEEE
Confidence 66555554 444 46 44554
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0043 Score=59.90 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHH--HHHHh---cCCCcEEEEEEcCCHHHHHHHHH-------HcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADIARKL--SRAIT---LAPNAVLSAVASRSLEKATNFAK-------ANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~--~~~~~---~~~~~~vv~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+||+|||+|++|... +..+. ..++.+|+ ++|+++++++.... ..+.+..+...+|+++.+++ .|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~-L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~--AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIA-LMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG--ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC--CCE
Confidence 589999999998753 22343 34455655 89999988765433 23332234457888899886 999
Q ss_pred EEEcCCCcccHHHHH---HHHHcC
Q 018020 77 VYLPLPTSMHVKWAI---SVAQKK 97 (362)
Q Consensus 77 V~i~~~~~~h~~~~~---~al~~g 97 (362)
|+++.+...+..... -.+|.|
T Consensus 78 Vi~ai~~~~~~~~~~de~i~~K~g 101 (423)
T cd05297 78 VINTIQVGGHEYTETDFEIPEKYG 101 (423)
T ss_pred EEEeeEecCccchhhhhhhHHHcC
Confidence 999999776655544 345555
|
linked to 3D####ucture |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0028 Score=58.67 Aligned_cols=111 Identities=17% Similarity=0.227 Sum_probs=69.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
.++||||+|.+|+..+..++.. +++|+ ++|+...+.. +...+ ....++++++|+. .|+|++.+|-..--
T Consensus 143 kTvGIiG~G~IG~~va~~l~af-gm~v~-~~d~~~~~~~--~~~~~----~~~~~~Ld~lL~~--sDiv~lh~PlT~eT- 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAF-GMKVI-GYDPYSPRER--AGVDG----VVGVDSLDELLAE--ADILTLHLPLTPET- 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EECCCCchhh--hcccc----ceecccHHHHHhh--CCEEEEcCCCCcch-
Confidence 4799999999999999999888 89987 6888322211 11112 2356899999996 99999988853210
Q ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 89 WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 89 ~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
+|++ +.++...| +.|. ++++..+--.=....|.+.+ ++|.|.
T Consensus 212 ---------~g~i-------~~~~~a~M-----K~ga-ilIN~aRG~vVde~aL~~AL-~~G~i~ 253 (324)
T COG0111 212 ---------RGLI-------NAEELAKM-----KPGA-ILINAARGGVVDEDALLAAL-DSGKIA 253 (324)
T ss_pred ---------hccc-------CHHHHhhC-----CCCe-EEEECCCcceecHHHHHHHH-HcCCcc
Confidence 1111 12221111 1233 56666655444556777777 666554
|
|
| >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0099 Score=55.11 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=67.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHHH---cCCCC---------------CCccc--CCHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAKA---NNFPP---------------DAKVY--GSYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~~---~~~~~---------------~~~~~--~~~~ 66 (362)
++||||-|+|.||+..++.+...+++++++|-|.. .+.+..+-+- +|.-+ .+.++ .+++
T Consensus 2 ~~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (343)
T PRK07729 2 KTKVAINGFGRIGRMVFRKAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRDPK 81 (343)
T ss_pred ceEEEEECcChHHHHHHHHHhhcCCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCChh
Confidence 37999999999999888886656789999998863 3333333211 12100 11111 2444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++ ..+.++|+|+-||......+.+...+++| |-|.+=-|
T Consensus 82 ~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (343)
T PRK07729 82 ELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP 122 (343)
T ss_pred hCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC
Confidence 44 23357999999999999999999999999 55555434
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=53.05 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=49.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCC-C--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNF-P--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~-~--------~~~~~~~~~~e~l 69 (362)
.||+|||+|.||...+..+... +.+|+ ++|+++++++...+ +.|. . ....+.++++ .+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~ 81 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAA-GMDVW-LLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLE-EL 81 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHH-Hh
Confidence 5799999999999999998766 67765 78999887653211 1111 0 0012344554 45
Q ss_pred cCCCCcEEEEcCCCccc
Q 018020 70 DDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h 86 (362)
+ ++|+|+.+.|...+
T Consensus 82 ~--~aD~Vieav~e~~~ 96 (295)
T PLN02545 82 R--DADFIIEAIVESED 96 (295)
T ss_pred C--CCCEEEEcCccCHH
Confidence 5 49999999996655
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.008 Score=50.57 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=25.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
||+|||+|.+|...+..+.+. ++.=+.++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 689999999999999988776 554344777654
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6 | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.00059 Score=51.23 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=58.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~~~ 85 (362)
|||.|||.|...+..+..+.+.+.++-+.++.-|.-. ..+.+...+ -.+|+++++ .+.++|+|+|....+.
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~aPGN~G~-~~~~~~~~~-----~~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVAPGNPGT-AELGKNVPI-----DITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEEE--TTG-GGTSEEE-S------TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEeCCCHHH-HhhceecCC-----CCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 7999999996655667777788888777677655421 111111211 245666665 4578999999998888
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
-.-++...-++|.+||
T Consensus 75 ~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 75 VAGLADALRAAGIPVF 90 (100)
T ss_dssp HTTHHHHHHHTT-CEE
T ss_pred HHHHHHHHHHCCCcEE
Confidence 8899999999998887
|
3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0097 Score=58.66 Aligned_cols=76 Identities=14% Similarity=0.151 Sum_probs=54.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcC-CC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANN-FP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~-~~--------~~~~~~~~~~e~l 69 (362)
.||+|||+|.||...+..+... +++|+ ++|++++.+++..+ +.| +. ......+|++++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~a-G~~V~-l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l- 82 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASA-GHQVL-LYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL- 82 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-
Confidence 5799999999999999988766 78866 89999988764311 112 10 112456788764
Q ss_pred cCCCCcEEEEcCCCcccHHH
Q 018020 70 DDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~ 89 (362)
. ++|+|+-+.|.......
T Consensus 83 ~--~aDlVIEav~E~~~vK~ 100 (503)
T TIGR02279 83 A--DAGLVIEAIVENLEVKK 100 (503)
T ss_pred C--CCCEEEEcCcCcHHHHH
Confidence 3 59999999998765433
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.012 Score=53.89 Aligned_cols=144 Identities=9% Similarity=0.067 Sum_probs=88.0
Q ss_pred eeEEEEEec-cHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||+|+ |-.|+.++..|.+ ++.++.+.+.-..+...++. -+|+- ....+-++..++..-.++|+|+-|.+...
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~-~~f~~-~~~~v~~~~~~~~~~~~~Divf~~ag~~~ 78 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKY-IEFGG-KSIGVPEDAADEFVFSDVDIVFFAAGGSV 78 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCcc-ccccC-ccccCccccccccccccCCEEEEeCchHH
Confidence 479999996 7779999999987 88887665555444333321 11110 00123344445544457999999999999
Q ss_pred cHHHHHHHHHcCCeEEE---------eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceE
Q 018020 86 HVKWAISVAQKKKHLLM---------EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLR 156 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~---------EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~ 156 (362)
-.++..++.++|..|+- +=|+....--...|.+.-+ +| .+..+-|.-=......|+-+. +...|-+|.
T Consensus 79 s~~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~-rg-~IianpNCst~~l~~aL~PL~-~~~~i~~v~ 155 (334)
T COG0136 79 SKEVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQK-RG-FIIANPNCSTIQLVLALKPLH-DAFGIKRVV 155 (334)
T ss_pred HHHHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhhh-CC-CEEECCChHHHHHHHHHHHHH-hhcCceEEE
Confidence 99999999999987763 2255443333333444444 55 444454444455566777776 434344433
|
|
| >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.012 Score=54.71 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=67.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcC---CCcEEEEEEcCCH-HHHHHH---HHHcCC-C--------------CCCccc--CC
Q 018020 9 IRFGIIGAADIARKLSRAITLA---PNAVLSAVASRSL-EKATNF---AKANNF-P--------------PDAKVY--GS 64 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~---~~~~vv~v~d~~~-~~~~~~---~~~~~~-~--------------~~~~~~--~~ 64 (362)
+||||+|+|.+|+..++.+... +++++++|-|... +....+ ...+|. + +.+.++ .+
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 81 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHERD 81 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 7999999999999998887642 4799999887543 222222 111110 0 011121 14
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
++++ ..+.++|+|+-||......+.+..++++| |-|.+--|+.
T Consensus 82 p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~ 126 (336)
T PRK13535 82 IASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGS 126 (336)
T ss_pred cccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcc
Confidence 4444 23358999999999999999999999999 6777776754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0037 Score=52.90 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=44.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----------C-CC--------CCCcccCCHHHHhc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----------N-FP--------PDAKVYGSYEALLD 70 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----------~-~~--------~~~~~~~~~~e~l~ 70 (362)
||+|||+|.||...+..+... +++|+ ++|++++..+...+.. + +. ....+.+|++++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~-G~~V~-l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA-GYEVT-LYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT-TSEEE-EE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCcEE-EEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-
Confidence 699999999999998888777 78866 8999988765432221 1 10 1234456666665
Q ss_pred CCCCcEEEEcCCCcc
Q 018020 71 DKDIDAVYLPLPTSM 85 (362)
Q Consensus 71 ~~~~D~V~i~~~~~~ 85 (362)
+ +|+|+=+.|...
T Consensus 78 ~--adlViEai~E~l 90 (180)
T PF02737_consen 78 D--ADLVIEAIPEDL 90 (180)
T ss_dssp T--ESEEEE-S-SSH
T ss_pred h--hheehhhccccH
Confidence 3 677776666543
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1810 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.028 Score=48.00 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=78.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEc-CCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLP-LPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~-~~~~ 84 (362)
+|||++|..|..|.+.+..+.-. -..++++|.+. ++. ++ ...+..+++|.. ++.|+++-. ..|+
T Consensus 1 ~mki~vlt~g~yG~R~~~nl~~~~f~~~~v~v~~~-Pe~---------~~---~fie~P~~~Lp~~~e~Di~va~~lHPD 67 (224)
T COG1810 1 MMKILVLTDGEYGKRAVNNLACKGFKNQFVAVKEY-PEE---------LP---DFIEEPEDLLPKLPEADIVVAYGLHPD 67 (224)
T ss_pred CcEEEEEeeccchHHHHHhHhhhccccceEEEEec-ccc---------cc---chhhCHHHhcCCCCCCCEEEEeccCcc
Confidence 48999999999999998887643 23677888876 331 11 345677888876 789998854 6777
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.-..++..+.+.| +.|++ |....-...++|.+.+.+.|+.+.
T Consensus 68 l~~~L~e~~~~~~~~alIv--p~~~~~g~rkqL~~~~~~~g~e~~ 110 (224)
T COG1810 68 LLLALPEKAAEGGVKALIV--PAEPPEGLRKQLKEFCEELGVEFE 110 (224)
T ss_pred HHHHHHHHHHhCCccEEEE--ecCCChhHHHHHHHHhhhcceeee
Confidence 8888898888888 77877 555566777777777777777664
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.032 Score=50.76 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=95.6
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-----CHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-----SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~l~~~~~D~V~i~~ 81 (362)
..-+.|.|+ |+.|.-.+..+... +... +++.||..+...+..++|. ++..|. .++++++. .++|+.|.
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~-g~~~-aLAgRs~~kl~~l~~~LG~--~~~~~p~~~p~~~~~~~~~--~~VVlncv 79 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLARE-GLTA-ALAGRSSAKLDALRASLGP--EAAVFPLGVPAALEAMASR--TQVVLNCV 79 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHc-CCch-hhccCCHHHHHHHHHhcCc--cccccCCCCHHHHHHHHhc--ceEEEecc
Confidence 577899997 77787778888766 4443 6889999999999999984 344443 44666665 99999999
Q ss_pred CCccc--HHHHHHHHHcCCeEEEeCCCCCCH---HHHHHH-HHHHHHcCCEEEEeeecc---cCh-hHHHHHHhhcCCCC
Q 018020 82 PTSMH--VKWAISVAQKKKHLLMEKPMALNV---AEFDVI-LNACEENGVQLMDGTMWV---HNP-RTAQMKEFVSDPQR 151 (362)
Q Consensus 82 ~~~~h--~~~~~~al~~gk~V~~EKP~~~~~---~~~~~l-~~~a~~~~~~~~v~~~~r---~~p-~~~~~k~~i~~~g~ 151 (362)
-|..| .+++..|+.+|.|.+ + ++--+ +.+..+ .+.|+++|+.+.-++-+= +.- .+..+++.+ .-.
T Consensus 80 GPyt~~g~plv~aC~~~GTdY~-D--iTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDsIPsDl~v~~l~~~~~--~d~ 154 (382)
T COG3268 80 GPYTRYGEPLVAACAAAGTDYA-D--ITGEIMFFENSIDLYHAQAADAGARIIPGCGFDSIPSDLGVYALLKQAL--PDG 154 (382)
T ss_pred ccccccccHHHHHHHHhCCCee-e--ccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCcCccchHHHHHHHhhC--ccc
Confidence 88765 688999999999954 3 33333 333344 556888998876554333 222 334444444 344
Q ss_pred ccceEEEEE
Q 018020 152 FGQLRTMHS 160 (362)
Q Consensus 152 iG~i~~i~~ 160 (362)
+|++...+.
T Consensus 155 ~~~~~~t~l 163 (382)
T COG3268 155 TEELIATHL 163 (382)
T ss_pred ccchhhhhe
Confidence 566554443
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.015 Score=57.25 Aligned_cols=88 Identities=11% Similarity=-0.015 Sum_probs=61.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-||+|+|+|..|...+..++.. +.+++ ++|..+++.+. .++.|+. ........+.+. ++|+|+++..-+...+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~-G~~v~-~~D~~~~~~~~-l~~~g~~--~~~~~~~~~~l~--~~D~VV~SpGi~~~~p 85 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRF-GARPT-VCDDDPDALRP-HAERGVA--TVSTSDAVQQIA--DYALVVTSPGFRPTAP 85 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHH-HHhCCCE--EEcCcchHhHhh--cCCEEEECCCCCCCCH
Confidence 4899999999999888877766 67776 48877665554 3445653 111122334454 4898888776666667
Q ss_pred HHHHHHHcCCeEEEe
Q 018020 89 WAISVAQKKKHLLME 103 (362)
Q Consensus 89 ~~~~al~~gk~V~~E 103 (362)
.+.+|.++|.+|+.|
T Consensus 86 ~~~~a~~~gi~v~~~ 100 (488)
T PRK03369 86 VLAAAAAAGVPIWGD 100 (488)
T ss_pred HHHHHHHCCCcEeeH
Confidence 888889999999865
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.01 Score=56.89 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=56.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|+|+|+|.+|...+..++.. +++|+ ++|+++.++...+ ..|. . ..+++++++ +.|+|+.+|.+..-.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~Vi-V~d~dp~ra~~A~-~~G~----~-v~~l~eal~--~aDVVI~aTG~~~vI 281 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVI-VTEVDPICALQAA-MDGF----R-VMTMEEAAE--LGDIFVTATGNKDVI 281 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EEcCCchhhHHHH-hcCC----E-ecCHHHHHh--CCCEEEECCCCHHHH
Confidence 35899999999999999999888 67754 7899887764433 3353 2 346788876 599999888653211
Q ss_pred -HHHHHHHHcCCeE
Q 018020 88 -KWAISVAQKKKHL 100 (362)
Q Consensus 88 -~~~~~al~~gk~V 100 (362)
......++.|.-+
T Consensus 282 ~~~~~~~mK~Gail 295 (425)
T PRK05476 282 TAEHMEAMKDGAIL 295 (425)
T ss_pred HHHHHhcCCCCCEE
Confidence 1233444555333
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.037 Score=54.74 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=56.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHH----------HHcC-CC--------CCCcccCCHHHHh
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFA----------KANN-FP--------PDAKVYGSYEALL 69 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~----------~~~~-~~--------~~~~~~~~~~e~l 69 (362)
-||+|||+|.||...+..+... +++|+ ++|++++.+++.. .+.| +. ..+...+|++++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~a-G~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~- 84 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQA-GHTVL-LYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL- 84 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-
Confidence 5699999999999999988766 78866 8999998877631 1122 10 013456788764
Q ss_pred cCCCCcEEEEcCCCcccHHHHH
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAI 91 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~ 91 (362)
. ++|+|+-+.|.........
T Consensus 85 ~--~aDlViEav~E~~~vK~~v 104 (507)
T PRK08268 85 A--DCDLVVEAIVERLDVKQAL 104 (507)
T ss_pred C--CCCEEEEcCcccHHHHHHH
Confidence 3 5999999999987755443
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0058 Score=55.90 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=76.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH---HHHHHHHHHcCCC-CCCcc----cCCH---HHHhcCCCCcEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL---EKATNFAKANNFP-PDAKV----YGSY---EALLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~---~~~~~~~~~~~~~-~~~~~----~~~~---~e~l~~~~~D~V 77 (362)
-++.|+|+|.+|+..+..+... ++.-+.|++|+. ++++++++++.-. +.+.+ .++. ++.++ +.|++
T Consensus 127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--~~Dil 203 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--SSDIL 203 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc--cCCEE
Confidence 4789999999999888888766 565455889986 6777776654210 01011 1222 22333 47999
Q ss_pred EEcCCCcccHH-----H-HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHH
Q 018020 78 YLPLPTSMHVK-----W-AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQM 142 (362)
Q Consensus 78 ~i~~~~~~h~~-----~-~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~ 142 (362)
+.+||...+.. + -...+..+ .+++| +..++.+ -.+++.|++.|.+..-|............
T Consensus 204 INaTp~Gm~~~~~~~~~~~~~~l~~~-~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f 270 (289)
T PRK12548 204 VNATLVGMKPNDGETNIKDTSVFRKD-LVVAD--TVYNPKK-TKLLEDAEAAGCKTVGGLGMLLWQGAEAY 270 (289)
T ss_pred EEeCCCCCCCCCCCCCCCcHHhcCCC-CEEEE--ecCCCCC-CHHHHHHHHCCCeeeCcHHHHHHHHHHHH
Confidence 99999776431 1 12334433 34444 3344433 56788888888888777555443333333
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0042 Score=59.17 Aligned_cols=82 Identities=17% Similarity=0.199 Sum_probs=55.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEE-----EEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSA-----VASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~-----v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
..+|+|||+|.+|..++..++.. +++++. +.|.+....++ +.+-|++ ..+++|++.. .|+|++.+|
T Consensus 36 gKtIaIIGyGSqG~AqAlNLrdS-GvnVvvglr~~~id~~~~s~~k-A~~dGF~-----v~~~~Ea~~~--ADvVviLlP 106 (487)
T PRK05225 36 GKKIVIVGCGAQGLNQGLNMRDS-GLDISYALRKEAIAEKRASWRK-ATENGFK-----VGTYEELIPQ--ADLVINLTP 106 (487)
T ss_pred CCEEEEEccCHHHHHHhCCCccc-cceeEEeccccccccccchHHH-HHhcCCc-----cCCHHHHHHh--CCEEEEcCC
Confidence 46899999999999888888877 677662 22222222222 3333653 3579999886 999999999
Q ss_pred CcccHHHHH---HHHHcCC
Q 018020 83 TSMHVKWAI---SVAQKKK 98 (362)
Q Consensus 83 ~~~h~~~~~---~al~~gk 98 (362)
...|..+-. ..|+.|.
T Consensus 107 Dt~q~~v~~~i~p~LK~Ga 125 (487)
T PRK05225 107 DKQHSDVVRAVQPLMKQGA 125 (487)
T ss_pred hHHHHHHHHHHHhhCCCCC
Confidence 987765553 3444444
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0081 Score=59.64 Aligned_cols=122 Identities=18% Similarity=0.195 Sum_probs=78.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|+|+|.+|+..+..+.+. +++|+ +++|+.++++.++++++.. ...+.+..+.+. .+.|+|+.+||...+.
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~-G~~V~-i~nR~~e~a~~la~~l~~~--~~~~~~~~~~~~-~~~diiINtT~vGm~~ 453 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEK-GARVV-IANRTYERAKELADAVGGQ--ALTLADLENFHP-EEGMILANTTSVGMQP 453 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHHhCCc--eeeHhHhhhhcc-ccCeEEEecccCCCCC
Confidence 34789999999999999988877 56655 8899999999998887521 122333333332 2468888888876543
Q ss_pred H-----HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChh
Q 018020 88 K-----WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPR 138 (362)
Q Consensus 88 ~-----~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~ 138 (362)
. +-...++. ..+++| +..++.+ -.+++.|++.|.++.-|........
T Consensus 454 ~~~~~pl~~~~l~~-~~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~MLv~Qa 505 (529)
T PLN02520 454 NVDETPISKHALKH-YSLVFD--AVYTPKI-TRLLREAEESGAIIVSGTEMFIRQA 505 (529)
T ss_pred CCCCCcccHhhCCC-CCEEEE--eccCCCc-CHHHHHHHHCCCeEeCcHHHHHHHH
Confidence 1 22222332 345554 3344433 5678888888988877754444333
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.027 Score=51.34 Aligned_cols=101 Identities=10% Similarity=0.099 Sum_probs=69.5
Q ss_pred eEEEEEeccHH--------------------HHHHHHHHhcCCCcEEEEEEcCCHHHHHH----HHHHcCCCCCCcccCC
Q 018020 9 IRFGIIGAADI--------------------ARKLSRAITLAPNAVLSAVASRSLEKATN----FAKANNFPPDAKVYGS 64 (362)
Q Consensus 9 ~~v~iiG~G~~--------------------g~~~~~~~~~~~~~~vv~v~d~~~~~~~~----~~~~~~~~~~~~~~~~ 64 (362)
|||.+.|+|+- |...+..|.+. +++|+ ++|+++++++. ...+.|. ...+|
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA-GheV~-V~Drnrsa~e~e~~e~LaeaGA----~~AaS 74 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA-GHDVV-LAEPNREFMSDDLWKKVEDAGV----KVVSD 74 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC-CCEEE-EEeCChhhhhhhhhHHHHHCCC----eecCC
Confidence 57888888852 33556666555 67765 89998765432 2233453 57789
Q ss_pred HHHHhcCCCCcEEEEcCCCcccHHHHH-HH---HHcCCeEEEeCCCCCCHHHHHHHHHH
Q 018020 65 YEALLDDKDIDAVYLPLPTSMHVKWAI-SV---AQKKKHLLMEKPMALNVAEFDVILNA 119 (362)
Q Consensus 65 ~~e~l~~~~~D~V~i~~~~~~h~~~~~-~a---l~~gk~V~~EKP~~~~~~~~~~l~~~ 119 (362)
..++.++ .|+|++++|+..+.+-+. .. +..| +++++-. +.+++...++++-
T Consensus 75 ~aEAAa~--ADVVIL~LPd~aaV~eVl~GLaa~L~~G-aIVID~S-TIsP~t~~~~~e~ 129 (341)
T TIGR01724 75 DKEAAKH--GEIHVLFTPFGKGTFSIARTIIEHVPEN-AVICNTC-TVSPVVLYYSLEK 129 (341)
T ss_pred HHHHHhC--CCEEEEecCCHHHHHHHHHHHHhcCCCC-CEEEECC-CCCHHHHHHHHHH
Confidence 9999986 899999999988764442 22 2334 5777753 6688888888887
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.019 Score=53.10 Aligned_cols=98 Identities=19% Similarity=0.167 Sum_probs=67.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHH---HcCCCC---------------CCccc--CCHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAK---ANNFPP---------------DAKVY--GSYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~---~~~~~~---------------~~~~~--~~~~ 66 (362)
++||||-|+|.||+..++.+...++++|++|-|.. .+....+-+ .+|.-+ .+.++ .+++
T Consensus 2 ~~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~dp~ 81 (331)
T PRK15425 2 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA 81 (331)
T ss_pred ceEEEEEeeChHHHHHHHHHHHCCCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCChh
Confidence 37999999999999888886656789999998853 233332211 112100 01111 1444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++ ..+.++|+|+-||......+.+...+++| |-|.+--|
T Consensus 82 ~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap 122 (331)
T PRK15425 82 NLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP 122 (331)
T ss_pred hCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC
Confidence 44 23347999999999999999999999999 66666555
|
|
| >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.013 Score=54.30 Aligned_cols=98 Identities=20% Similarity=0.134 Sum_probs=65.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcCC-HHHHHHHHH---HcCCCC---------------CCccc--CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASRS-LEKATNFAK---ANNFPP---------------DAKVY--GS 64 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~~-~~~~~~~~~---~~~~~~---------------~~~~~--~~ 64 (362)
++||||-|+|.||+..++.+... +++++|+|-|.. .+....+-+ -+|.-+ .+.++ .+
T Consensus 1 ~~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 80 (337)
T PRK07403 1 MIRVAINGFGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDRN 80 (337)
T ss_pred CeEEEEEccChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcCC
Confidence 47999999999999988876544 579999999863 333332211 122110 11111 12
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++++ ..+.++|+|+-||......+.+...+++| |-|.+--|
T Consensus 81 p~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap 123 (337)
T PRK07403 81 PLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP 123 (337)
T ss_pred cccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC
Confidence 2333 22337999999999999999999999999 66666545
|
|
| >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.019 Score=53.32 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=68.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHH---HcCCCC---------------CCccc--CCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAK---ANNFPP---------------DAKVY--GSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~---~~~~~~---------------~~~~~--~~~ 65 (362)
++||||.|+|.||+...+.+...++++++++.|+ +.+....+-+ -+|..+ .+.++ .++
T Consensus 2 ~ikigInG~GRiGr~v~r~~~~~~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~~~ 81 (334)
T PRK08955 2 TIKVGINGFGRIGRLALRAAWDWPELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNKAI 81 (334)
T ss_pred CeEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecCCh
Confidence 4899999999999999998877788999999985 3444443322 123211 01111 144
Q ss_pred HHHhcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
+++-= .++|+|+-||......+.+..++++| |-|.+=-|
T Consensus 82 ~~~~w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap 121 (334)
T PRK08955 82 ADTDW-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP 121 (334)
T ss_pred hhCCc-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence 44422 27999999999999999999999999 66666555
|
|
| >PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.015 Score=54.81 Aligned_cols=98 Identities=19% Similarity=0.121 Sum_probs=66.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcCCH-HHHHHH---HHHcCC-C---------------CCCccc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASRSL-EKATNF---AKANNF-P---------------PDAKVY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~~~-~~~~~~---~~~~~~-~---------------~~~~~~--~ 63 (362)
++||||.|+|.+|+..++.+... |..+|++|-|... +.+..+ ...+|. + +.+.++ .
T Consensus 60 ~~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~ 139 (395)
T PLN03096 60 KIKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDR 139 (395)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcC
Confidence 48999999999999999987644 6899999988643 222211 111110 0 001111 1
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
|++++ ..+.++|+|+-||......+.+...+++| |-|++--|
T Consensus 140 dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap 183 (395)
T PLN03096 140 NPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP 183 (395)
T ss_pred CcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC
Confidence 23333 22347999999999999999999999999 67777656
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.004 Score=58.74 Aligned_cols=62 Identities=15% Similarity=0.278 Sum_probs=47.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|||||+|.+|+..++.++.. +++++ +||+.... . +. . ..+.+++++++. .|+|++.+|-
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~-G~~V~-~~dp~~~~-~------~~--~-~~~~~L~ell~~--sDiI~lh~PL 177 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEAL-GIKTL-LCDPPRAD-R------GD--E-GDFRSLDELVQE--ADILTFHTPL 177 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCcccc-c------cc--c-cccCCHHHHHhh--CCEEEEeCCC
Confidence 46899999999999999999877 89877 57864321 0 11 0 236799999986 8999998884
|
|
| >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.019 Score=53.19 Aligned_cols=98 Identities=19% Similarity=0.253 Sum_probs=68.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHH---cCC-CC--------------CCccc--CCHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKA---NNF-PP--------------DAKVY--GSYE 66 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~---~~~-~~--------------~~~~~--~~~~ 66 (362)
+||||-|+|.||+..++.+...+++++++|-|+ +.+.+..+-+- +|. +. .++++ .++.
T Consensus 3 ~ki~INGfGRIGr~v~r~~~~~~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~dp~ 82 (337)
T PTZ00023 3 VKLGINGFGRIGRLVFRAALEREDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEKDPA 82 (337)
T ss_pred eEEEEECcChHHHHHHHHHHhcCCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCCChh
Confidence 799999999999988888665678999999884 44444333210 121 10 01111 3444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
++ ..+.++|+|+-||......+.+..++++| |-|.+--|.
T Consensus 83 ~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~ 124 (337)
T PTZ00023 83 AIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPP 124 (337)
T ss_pred hCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCC
Confidence 54 34458999999999999999999999999 566655453
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.015 Score=50.14 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=28.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+.-||.|||+|.+|...+..|... ++.-+.++|.+.
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 356899999999999999999877 554344778763
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0077 Score=55.91 Aligned_cols=66 Identities=24% Similarity=0.302 Sum_probs=49.0
Q ss_pred eeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.++||||+|.||+..++.++ .. +++|+ .+|+.... .....++. .+.+++++|+. .|+|++++|-.
T Consensus 145 gktvGIiG~G~IG~~va~~l~~~f-gm~V~-~~~~~~~~--~~~~~~~~-----~~~~l~ell~~--sDvv~lh~plt 211 (323)
T PRK15409 145 HKTLGIVGMGRIGMALAQRAHFGF-NMPIL-YNARRHHK--EAEERFNA-----RYCDLDTLLQE--SDFVCIILPLT 211 (323)
T ss_pred CCEEEEEcccHHHHHHHHHHHhcC-CCEEE-EECCCCch--hhHHhcCc-----EecCHHHHHHh--CCEEEEeCCCC
Confidence 368999999999999999887 55 78877 57765321 11234443 35699999986 99999998854
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.024 Score=43.94 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=64.0
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhc--CCCCcEEEEcCCCcc
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLD--DKDIDAVYLPLPTSM 85 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~--~~~~D~V~i~~~~~~ 85 (362)
|.|+|+|.+|...+..|++ .+.+++ ++|.++++.+.+.++. .+ .++. +.+.+.+ -.+.+.|++++++..
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vv-vid~d~~~~~~~~~~~-~~---~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~ 74 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVV-VIDRDPERVEELREEG-VE---VIYGDATDPEVLERAGIEKADAVVILTDDDE 74 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEE-EEESSHHHHHHHHHTT-SE---EEES-TTSHHHHHHTTGGCESEEEEESSSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEE-EEECCcHHHHHHHhcc-cc---cccccchhhhHHhhcCccccCEEEEccCCHH
Confidence 6799999999999999998 466766 7789999888887654 32 2333 3333322 246899999999876
Q ss_pred cHHHHHHHHHc---CCeEEEeCCCCCCHHHHHHH
Q 018020 86 HVKWAISVAQK---KKHLLMEKPMALNVAEFDVI 116 (362)
Q Consensus 86 h~~~~~~al~~---gk~V~~EKP~~~~~~~~~~l 116 (362)
---.+...++. ..+|++. ..+.+..+.+
T Consensus 75 ~n~~~~~~~r~~~~~~~ii~~---~~~~~~~~~l 105 (116)
T PF02254_consen 75 ENLLIALLARELNPDIRIIAR---VNDPENAELL 105 (116)
T ss_dssp HHHHHHHHHHHHTTTSEEEEE---ESSHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHH
Confidence 55555444443 3677763 4455554443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.005 Score=56.86 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=49.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+|||||+|.||+..++.++.. ++++. ++|++.+....+. .+ .-+.++++++.. .|+|+++.|....
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~af-G~~V~-~~~~~~~~~~~~~-~~------~~~~~l~e~l~~--aDvvv~~lPlt~~ 203 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTW-GFPLR-CWSRSRKSWPGVQ-SF------AGREELSAFLSQ--TRVLINLLPNTPE 203 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCCCCCCCce-ee------cccccHHHHHhc--CCEEEECCCCCHH
Confidence 35899999999999999999876 78877 5677543221110 01 124689999986 8999999997654
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.0074 Score=55.87 Aligned_cols=66 Identities=23% Similarity=0.297 Sum_probs=50.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.++||||.|.||+..++.++ --+++|. .+|+.+. ....++.+. .|-+++|+|+. .|+|++.+|-.
T Consensus 146 gktvGIiG~GrIG~avA~r~~-~Fgm~v~-y~~~~~~--~~~~~~~~~-----~y~~l~ell~~--sDii~l~~Plt 211 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLK-GFGMKVL-YYDRSPN--PEAEKELGA-----RYVDLDELLAE--SDIISLHCPLT 211 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCCEEE-EECCCCC--hHHHhhcCc-----eeccHHHHHHh--CCEEEEeCCCC
Confidence 358999999999999999998 4378876 6888754 223344432 35559999996 99999988864
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.021 Score=50.32 Aligned_cols=96 Identities=20% Similarity=0.272 Sum_probs=56.5
Q ss_pred EEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 11 FGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
|+|+|+ |..|+..++.|.+ ++++|.+++-... +..+.+.+ .|..--..-++|.+.|.+. .++|+|+++++...
T Consensus 1 I~V~GatG~~G~~v~~~L~~-~~~~V~~l~R~~~~~~~~~l~~-~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~-- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS-AGFSVRALVRDPSSDRAQQLQA-LGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH-- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH-TTGCEEEEESSSHHHHHHHHHH-TTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC--
T ss_pred CEEECCccHHHHHHHHHHHh-CCCCcEEEEeccchhhhhhhhc-ccceEeecccCCHHHHHHHHcCCceEEeecCcch--
Confidence 689996 9999999999988 6899998885443 33444433 3432000013344444221 36999998888542
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
....+....++++|+++|++.++
T Consensus 77 -------------------~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 77 -------------------PSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred -------------------hhhhhhhhhHHHhhhccccceEE
Confidence 23445555555566555555544
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0078 Score=55.30 Aligned_cols=64 Identities=20% Similarity=0.330 Sum_probs=48.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.||+..++.++.. +++++ ++|++... .+.. ..+.+++++++. .|+|++++|...
T Consensus 122 gktvgIiG~G~IG~~vA~~l~af-G~~V~-~~~r~~~~-------~~~~---~~~~~l~ell~~--aDiv~~~lp~t~ 185 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAF-GMNIY-AYTRSYVN-------DGIS---SIYMEPEDIMKK--SDFVLISLPLTD 185 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCCcc-------cCcc---cccCCHHHHHhh--CCEEEECCCCCc
Confidence 46899999999999999888766 78877 67776321 1221 236799999985 899999999754
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.02 Score=54.30 Aligned_cols=75 Identities=15% Similarity=0.276 Sum_probs=54.5
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
...||+||| +|.||...+..+++. +.+|. ++|++. .++.++++.. +|+|++|+|...
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~-G~~V~-~~d~~~------------------~~~~~~~~~~--aDlVilavP~~~ 154 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS-GYQVR-ILEQDD------------------WDRAEDILAD--AGMVIVSVPIHL 154 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC-CCeEE-EeCCCc------------------chhHHHHHhc--CCEEEEeCcHHH
Confidence 457899999 999999999999876 56644 677642 1255666664 899999999998
Q ss_pred cHHHHHHHHHcC-CeEEEe
Q 018020 86 HVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~E 103 (362)
-.+++....... ..++++
T Consensus 155 ~~~~~~~l~~l~~~~iv~D 173 (374)
T PRK11199 155 TEEVIARLPPLPEDCILVD 173 (374)
T ss_pred HHHHHHHHhCCCCCcEEEE
Confidence 777776644422 235555
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.005 Score=58.29 Aligned_cols=62 Identities=21% Similarity=0.365 Sum_probs=48.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|||||+|.+|+..++.++.. +++++ ++|+..... ..+ ..+.+++++++. .|+|++++|-
T Consensus 116 gktvGIIG~G~IG~~va~~l~a~-G~~V~-~~Dp~~~~~-----~~~-----~~~~~l~ell~~--aDiV~lh~Pl 177 (381)
T PRK00257 116 ERTYGVVGAGHVGGRLVRVLRGL-GWKVL-VCDPPRQEA-----EGD-----GDFVSLERILEE--CDVISLHTPL 177 (381)
T ss_pred cCEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCccccc-----ccC-----ccccCHHHHHhh--CCEEEEeCcC
Confidence 46799999999999999999877 78877 678753311 111 236799999985 9999999986
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=54.91 Aligned_cols=79 Identities=23% Similarity=0.195 Sum_probs=48.7
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----C------CCcccCCHHHHhcCCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----P------DAKVYGSYEALLDDKDID 75 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~------~~~~~~~~~e~l~~~~~D 75 (362)
+.+|||+|||+|.+|..++..|.+. +.++. ++.++.. +++. +.|+. . .+.++++.++ + ..+|
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~-g~~V~-~~~r~~~--~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~~D 74 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARA-GFDVH-FLLRSDY--EAVR-ENGLQVDSVHGDFHLPPVQAYRSAED-M--PPCD 74 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHC-CCeEE-EEEeCCH--HHHH-hCCeEEEeCCCCeeecCceEEcchhh-c--CCCC
Confidence 3478999999999999999988776 56666 4445432 2222 22221 0 0122333332 2 3589
Q ss_pred EEEEcCCCcccHHHHHH
Q 018020 76 AVYLPLPTSMHVKWAIS 92 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~ 92 (362)
+|+++++.....+.+..
T Consensus 75 ~vilavK~~~~~~~~~~ 91 (313)
T PRK06249 75 WVLVGLKTTANALLAPL 91 (313)
T ss_pred EEEEEecCCChHhHHHH
Confidence 99999998766554433
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.014 Score=56.37 Aligned_cols=88 Identities=11% Similarity=0.174 Sum_probs=59.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+.-||.|||.|.+|...+..+++. +.+|+ ++|++++..... ...+ . ....+.+.++. +.|+|+.+.+....
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~-G~~V~-g~D~~~~~~~~~-~~~~---~-~~~~~~~~~~~--~~dlvV~s~gi~~~ 72 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQK-GVYVI-GVDKSLEALQSC-PYIH---E-RYLENAEEFPE--QVDLVVRSPGIKKE 72 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHC-CCEEE-EEeCCccccchh-HHHh---h-hhcCCcHHHhc--CCCEEEECCCCCCC
Confidence 346899999999999988888877 56655 577765433211 0000 0 11223333333 48999998877788
Q ss_pred HHHHHHHHHcCCeEEEe
Q 018020 87 VKWAISVAQKKKHLLME 103 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~E 103 (362)
.+.+.+|+++|.+|..+
T Consensus 73 ~~~l~~A~~~g~~vv~~ 89 (418)
T PRK00683 73 HPWVQAAIASHIPVVTD 89 (418)
T ss_pred cHHHHHHHHCCCcEEEH
Confidence 89999999999886654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.025 Score=48.86 Aligned_cols=86 Identities=16% Similarity=0.178 Sum_probs=59.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCH-HHHhcCCCCcEEEEcCCCc-c
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSY-EALLDDKDIDAVYLPLPTS-M 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~-~e~l~~~~~D~V~i~~~~~-~ 85 (362)
-||.|||.|..|..-+..|.+. +.+|+ |++++. +..+.++++.++. ....++ .+.++ +.|+|+++|... .
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~Vt-Vvsp~~~~~l~~l~~~~~i~---~~~~~~~~~dl~--~~~lVi~at~d~~l 82 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLR-VIAEELESELTLLAEQGGIT---WLARCFDADILE--GAFLVIAATDDEEL 82 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEE-EEcCCCCHHHHHHHHcCCEE---EEeCCCCHHHhC--CcEEEEECCCCHHH
Confidence 4899999999999989988876 67766 555543 3455566554442 111222 23344 499999999987 7
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
...+...|-++|+.|-
T Consensus 83 n~~i~~~a~~~~ilvn 98 (205)
T TIGR01470 83 NRRVAHAARARGVPVN 98 (205)
T ss_pred HHHHHHHHHHcCCEEE
Confidence 7888888888888774
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.021 Score=54.41 Aligned_cols=81 Identities=10% Similarity=-0.018 Sum_probs=54.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
--+|+|+|+|.+|...+..++.. +++|+ ++|+++.++.. +...|. . ..+.++++. +.|+|+.+|.+..-.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~Vi-V~d~dp~r~~~-A~~~G~----~-v~~leeal~--~aDVVItaTG~~~vI 264 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVI-VTEVDPIRALE-AAMDGF----R-VMTMEEAAK--IGDIFITATGNKDVI 264 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEE-EEeCChhhHHH-HHhcCC----E-eCCHHHHHh--cCCEEEECCCCHHHH
Confidence 34899999999999999999877 78855 68888876543 333453 2 335677775 489999887653322
Q ss_pred H-HHHHHHHcCC
Q 018020 88 K-WAISVAQKKK 98 (362)
Q Consensus 88 ~-~~~~al~~gk 98 (362)
. ....+++.|.
T Consensus 265 ~~~~~~~mK~Ga 276 (406)
T TIGR00936 265 RGEHFENMKDGA 276 (406)
T ss_pred HHHHHhcCCCCc
Confidence 2 2334555554
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG1832 Predicted CoA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.036 Score=43.74 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=71.3
Q ss_pred eeEEEEEeccH----HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAAD----IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~----~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
--+|+++|+.. -+...+..|+++ +++|+= .|+.-+. .+-+|. ++|.|+.|+-. .+|+|.|.-++
T Consensus 16 ~K~IAvVG~S~~P~r~sy~V~kyL~~~-GY~ViP---VNP~~~~--~eiLG~----k~y~sL~dIpe--~IDiVdvFR~~ 83 (140)
T COG1832 16 AKTIAVVGASDKPDRPSYRVAKYLQQK-GYRVIP---VNPKLAG--EEILGE----KVYPSLADIPE--PIDIVDVFRRS 83 (140)
T ss_pred CceEEEEecCCCCCccHHHHHHHHHHC-CCEEEe---eCcccch--HHhcCc----hhhhcHHhCCC--CCcEEEEecCh
Confidence 34799999964 355667777777 788663 3332111 122453 69999999985 59999999999
Q ss_pred cccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 84 SMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
..-.+++.++++.| |-++.+ +-..+.+ +. +.++++|+.
T Consensus 84 e~~~~i~~eal~~~~kv~W~Q-lGi~n~e-a~---~~~~~aG~~ 122 (140)
T COG1832 84 EAAPEVAREALEKGAKVVWLQ-LGIRNEE-AA---EKARDAGLD 122 (140)
T ss_pred hhhHHHHHHHHhhCCCeEEEe-cCcCCHH-HH---HHHHHhCcH
Confidence 99999999999999 666676 3334443 43 455666663
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=48.83 Aligned_cols=70 Identities=19% Similarity=0.190 Sum_probs=43.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|||+|||+ |..|+..+....+. +.++++|+ |++.+...+....=+..++--.++..+.|. +.|+||.+-.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAiv-Rn~~K~~~~~~~~i~q~Difd~~~~a~~l~--g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIV-RNASKLAARQGVTILQKDIFDLTSLASDLA--GHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC-CCeeEEEE-eChHhccccccceeecccccChhhhHhhhc--CCceEEEecc
Confidence 68999997 78899998888766 78999888 777776543111001111111122234444 5999997643
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0069 Score=55.97 Aligned_cols=63 Identities=24% Similarity=0.341 Sum_probs=47.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.+|+..++.++.. +++|+ .+|+.... ...+. -+.+++++|+. .|+|++++|-.
T Consensus 145 gktvGIiG~G~IG~~vA~~~~~f-gm~V~-~~d~~~~~-----~~~~~-----~~~~l~ell~~--sDvv~lh~Plt 207 (311)
T PRK08410 145 GKKWGIIGLGTIGKRVAKIAQAF-GAKVV-YYSTSGKN-----KNEEY-----ERVSLEELLKT--SDIISIHAPLN 207 (311)
T ss_pred CCEEEEECCCHHHHHHHHHHhhc-CCEEE-EECCCccc-----cccCc-----eeecHHHHhhc--CCEEEEeCCCC
Confidence 46899999999999999998866 78877 57875321 11122 25699999996 89999998854
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.027 Score=48.77 Aligned_cols=94 Identities=12% Similarity=0.136 Sum_probs=66.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc-CCHHHHhcCCCCcEEEEcCCCc-
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY-GSYEALLDDKDIDAVYLPLPTS- 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~~- 84 (362)
+.-+|.|||.|..|..-++.+.+. +..++.+.+...+..+.+.++.++. +. ..++.-.. .++++|+++|++.
T Consensus 11 ~~k~VlvvGgG~va~rKa~~ll~~-ga~v~Vvs~~~~~el~~~~~~~~i~----~~~~~~~~~~~-~~~~lviaAt~d~~ 84 (210)
T COG1648 11 EGKKVLVVGGGSVALRKARLLLKA-GADVTVVSPEFEPELKALIEEGKIK----WIEREFDAEDL-DDAFLVIAATDDEE 84 (210)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhc-CCEEEEEcCCccHHHHHHHHhcCcc----hhhcccChhhh-cCceEEEEeCCCHH
Confidence 345899999999999999999877 6777766665556677777777643 22 22222111 2399999999995
Q ss_pred ccHHHHHHHHHcCCeEE-EeCCC
Q 018020 85 MHVKWAISVAQKKKHLL-MEKPM 106 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~-~EKP~ 106 (362)
.-..+...|-++++.|- +++|-
T Consensus 85 ln~~i~~~a~~~~i~vNv~D~p~ 107 (210)
T COG1648 85 LNERIAKAARERRILVNVVDDPE 107 (210)
T ss_pred HHHHHHHHHHHhCCceeccCCcc
Confidence 56677777778888776 56664
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.01 Score=58.94 Aligned_cols=66 Identities=14% Similarity=0.198 Sum_probs=49.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.+|||||+|.||+..++.++.. +++++ ++|+.... ..+.+++. ...++++|+++. .|+|++++|..
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~f-G~~V~-~~d~~~~~--~~~~~~g~----~~~~~l~ell~~--aDvV~l~lPlt 204 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAF-GMKVL-AYDPYISP--ERAEQLGV----ELVDDLDELLAR--ADFITVHTPLT 204 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEE-EECCCCCh--hHHHhcCC----EEcCCHHHHHhh--CCEEEEccCCC
Confidence 5799999999999999999876 78876 57774221 11234453 345789999986 89999999954
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.034 Score=51.33 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=45.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
++||+|||+|.+|...+..+...+-.+|+ ++|+++++++..+.++ +........+|+++ +. +.|+|+++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~-L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~--~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IA--GSDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEE-EEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HC--CCCEEEEC
Confidence 37999999999999888887665323544 7899887665433221 11111122466755 44 48999987
Q ss_pred C
Q 018020 81 L 81 (362)
Q Consensus 81 ~ 81 (362)
.
T Consensus 78 ~ 78 (307)
T PRK06223 78 A 78 (307)
T ss_pred C
Confidence 5
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0091 Score=56.01 Aligned_cols=71 Identities=15% Similarity=0.119 Sum_probs=48.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--------CCcccCCHHHHhcCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--------DAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~e~l~~~~~D~V~i 79 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++...... ..++++. ...-+.++++++.. .|+|++
T Consensus 159 gktvGIiG~G~IG~~vA~~l~af-G~~V~-~~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl 232 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPF-GVKLL-ATRRSWTSEPE--DGLLIPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVL 232 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhC-CCEEE-EECCCCChhhh--hhhccccccccccccccCcccCHHHHHhh--CCEEEE
Confidence 35899999999999999999877 78877 57876322111 1100000 00135799999986 899999
Q ss_pred cCCCc
Q 018020 80 PLPTS 84 (362)
Q Consensus 80 ~~~~~ 84 (362)
++|-.
T Consensus 233 ~lPlt 237 (347)
T PLN02928 233 CCTLT 237 (347)
T ss_pred CCCCC
Confidence 99854
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.018 Score=55.68 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=49.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
--+|+|||+|.+|+..+..++.. +++|+ ++++++.++.... ..|. . +.+++++++. .|+|++++.+
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~-Ga~Vi-V~e~dp~~a~~A~-~~G~----~-~~~leell~~--ADIVI~atGt 319 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGF-GARVV-VTEIDPICALQAA-MEGY----Q-VVTLEDVVET--ADIFVTATGN 319 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchhHHHHH-hcCc----e-eccHHHHHhc--CCEEEECCCc
Confidence 35799999999999999999877 67755 7888876654332 2453 2 4578998875 9999998653
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.017 Score=54.15 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-------------CCcccCCHHHHhcCCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-------------DAKVYGSYEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-------------~~~~~~~~~e~l~~~~~ 74 (362)
++||+|||+|.||..++..+.+. +.+|. ++|+++. .+.+.+ .|+.. .....++. +.+. ++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~-G~~V~-~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 74 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA-GADVT-LIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-AALA--TA 74 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc-CCcEE-EEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccCh-hhcc--CC
Confidence 37899999999999999999877 56666 5677643 344332 33210 01123344 3333 59
Q ss_pred cEEEEcCCCcccHHHHHHHH
Q 018020 75 DAVYLPLPTSMHVKWAISVA 94 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al 94 (362)
|+|++++++....+.+....
T Consensus 75 D~vil~vk~~~~~~~~~~l~ 94 (341)
T PRK08229 75 DLVLVTVKSAATADAAAALA 94 (341)
T ss_pred CEEEEEecCcchHHHHHHHH
Confidence 99999999887666555443
|
|
| >COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.025 Score=53.16 Aligned_cols=130 Identities=15% Similarity=0.156 Sum_probs=86.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~~~ 85 (362)
|||.|||.|..-+..+..+.+.|...-+.++..|+-.+. -...-+++ .. ++.++++ .+.++|+++|.-..++
T Consensus 1 mkVLviGsGgREHAiA~~la~s~~v~~~~~apgN~G~a~-~~~~~~~~--~~--~~~~~lv~fA~~~~idl~vVGPE~pL 75 (428)
T COG0151 1 MKVLVIGSGGREHALAWKLAQSPLVLYVYVAPGNPGTAL-EAYLVNIE--ID--TDHEALVAFAKEKNVDLVVVGPEAPL 75 (428)
T ss_pred CeEEEEcCCchHHHHHHHHhcCCceeEEEEeCCCCccch-hhhhccCc--cc--cCHHHHHHHHHHcCCCEEEECCcHHH
Confidence 689999999765566666777777777778877765443 11222322 11 4566554 5678999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHH-HHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVI-LNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l-~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
-.-++...-++|.+||=-+--+.-+|..+.. .++.+++|++ ......|. ....++..|
T Consensus 76 ~~GvvD~l~~~Gi~vFGPsk~AA~lE~SK~faK~fm~k~~IP--ta~y~~f~-~~e~a~ayi 134 (428)
T COG0151 76 VAGVVDALRAAGIPVFGPTKAAAQLEGSKAFAKDFMKKYGIP--TAEYEVFT-DPEEAKAYI 134 (428)
T ss_pred hhhhHHHHHHCCCceeCcCHHHHHHHhhHHHHHHHHHHcCCC--cccccccC-CHHHHHHHH
Confidence 9999999999999998533333333433333 3456778888 33334455 677788877
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.027 Score=53.89 Aligned_cols=82 Identities=10% Similarity=0.007 Sum_probs=57.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-+|+|+|+|.+|...+..++.. +++++ ++|+++.++. .+..+|.. ..+.++.+. +.|+|+.+|.+..-..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~-Ga~Vi-V~d~d~~R~~-~A~~~G~~-----~~~~~e~v~--~aDVVI~atG~~~~i~ 272 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQ-GARVI-VTEVDPICAL-QAAMEGYE-----VMTMEEAVK--EGDIFVTTTGNKDIIT 272 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEECChhhHH-HHHhcCCE-----EccHHHHHc--CCCEEEECCCCHHHHH
Confidence 4899999999999999999877 67755 6899988765 45667742 224567765 4899999887654333
Q ss_pred HH-HHHHHcCCeE
Q 018020 89 WA-ISVAQKKKHL 100 (362)
Q Consensus 89 ~~-~~al~~gk~V 100 (362)
.. ..+++.|.-+
T Consensus 273 ~~~l~~mk~Ggil 285 (413)
T cd00401 273 GEHFEQMKDGAIV 285 (413)
T ss_pred HHHHhcCCCCcEE
Confidence 32 5556666443
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.024 Score=49.34 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=28.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+..||+|||+|.+|...+..|.+. ++.-+.++|.+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D 61 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFD 61 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356899999999999999999877 55545577776
|
|
| >TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.036 Score=50.70 Aligned_cols=135 Identities=17% Similarity=0.221 Sum_probs=84.7
Q ss_pred eEEEEEeccHHHHHHHHHH---hcC------C-------------CcEEEEEEcCCHHHH-----HHHHHHcC-------
Q 018020 9 IRFGIIGAADIARKLSRAI---TLA------P-------------NAVLSAVASRSLEKA-----TNFAKANN------- 54 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~---~~~------~-------------~~~vv~v~d~~~~~~-----~~~~~~~~------- 54 (362)
+||+|+|-|+-+..+++.+ ++. | +.|+|+.+|.+..+. +++-..-|
T Consensus 1 irvai~GvGncaSslvqGieyyk~~~~~~~~~Glm~~~~g~y~~~DIe~vaafDVd~~KVGkdlseai~~~pN~t~~~~~ 80 (351)
T TIGR03450 1 VRVAIVGVGNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIAD 80 (351)
T ss_pred CeEEEEeccHHHHHHHHHHHHHHhCCCccCcCCccccccCCcCccceEEEEEEeccccccCccHHHHHhcCCCCceeeec
Confidence 6999999999877654432 321 0 469999999876543 22222212
Q ss_pred CCC-CCc-----c------------------cCCHHHHhcCCCCcEEEEcCCCcc---cHHHHHHHHHcCCeEEEeCCCC
Q 018020 55 FPP-DAK-----V------------------YGSYEALLDDKDIDAVYLPLPTSM---HVKWAISVAQKKKHLLMEKPMA 107 (362)
Q Consensus 55 ~~~-~~~-----~------------------~~~~~e~l~~~~~D~V~i~~~~~~---h~~~~~~al~~gk~V~~EKP~~ 107 (362)
+|+ ++. . ..|.-+.|.+.++|+++...|... -.-++.+||++|.+..---|..
T Consensus 81 vp~~~v~V~~G~~lDg~~~~~~~~~~~~~~~~~dv~~~lk~~~~dVlvnylPvGs~~A~~~YA~AAl~aG~afVN~~P~~ 160 (351)
T TIGR03450 81 VPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVF 160 (351)
T ss_pred cCCCCCEEeecccccchhhHhhccccccccCHHHHHHHHHhcCCCEEEECCccchHHHHHHHHHHHHHcCCceEeccCcc
Confidence 110 000 0 114555678889999999998764 3567889999999888767732
Q ss_pred CCHHHHHHHHHHHHHcCCEEEEeeec----ccChhHHHHHHhh
Q 018020 108 LNVAEFDVILNACEENGVQLMDGTMW----VHNPRTAQMKEFV 146 (362)
Q Consensus 108 ~~~~~~~~l~~~a~~~~~~~~v~~~~----r~~p~~~~~k~~i 146 (362)
.....++.+.++++|+++. |--. --...-..|-+++
T Consensus 161 --ia~~p~~a~~f~e~glPi~-GDD~Ksq~GaTi~h~vLa~lf 200 (351)
T TIGR03450 161 --IASDPEWAKKFTDAGVPIV-GDDIKSQVGATITHRVLAKLF 200 (351)
T ss_pred --ccCCHHHHHHHHHCCCCEe-cccccccCCCchHHHHHHHHH
Confidence 2245578888899999875 3222 2233344555555
|
This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid. |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.068 Score=51.55 Aligned_cols=116 Identities=14% Similarity=0.061 Sum_probs=77.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc----------CCHHHHHHHHHHc-C-CC---C--CCcccCCHHHHh
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVAS----------RSLEKATNFAKAN-N-FP---P--DAKVYGSYEALL 69 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d----------~~~~~~~~~~~~~-~-~~---~--~~~~~~~~~e~l 69 (362)
+..||+|.|+|+.|...+..+.+. +++|++++| .+.+.+.+..++. + +. . +.. +.+.++++
T Consensus 231 ~g~rVaIqGfGnVG~~~A~~L~~~-GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~-~i~~~~i~ 308 (445)
T PRK09414 231 EGKRVVVSGSGNVAIYAIEKAQQL-GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE-YLEGGSPW 308 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe-ecCCcccc
Confidence 468999999999999999998876 799999999 6777666655443 1 21 0 111 23555666
Q ss_pred cCCCCcEEEEcCC-CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 70 DDKDIDAVYLPLP-TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 70 ~~~~~D~V~i~~~-~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+ .++|+++=|.. +..+.+-+....+.+..+++|--=.....++.+ ..+++|+.+.
T Consensus 309 ~-~d~DVliPaAl~n~It~~~a~~i~~~~akiIvEgAN~p~t~~A~~---~L~~rGI~~v 364 (445)
T PRK09414 309 S-VPCDIALPCATQNELDEEDAKTLIANGVKAVAEGANMPSTPEAIE---VFLEAGVLFA 364 (445)
T ss_pred c-cCCcEEEecCCcCcCCHHHHHHHHHcCCeEEEcCCCCCCCHHHHH---HHHHCCcEEE
Confidence 5 47999997655 456777777777778889999622222233433 4466676654
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.014 Score=53.85 Aligned_cols=73 Identities=18% Similarity=0.167 Sum_probs=48.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC---CCCcc-cCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP---PDAKV-YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~---~~~~~-~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. .. ....+ ..++++ +. +.|+|+++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~--~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CK--GADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hC--CCCEEEEccCC
Confidence 4799999999999988888766444556699999887664333221 10 00111 245544 44 48999998876
Q ss_pred c
Q 018020 84 S 84 (362)
Q Consensus 84 ~ 84 (362)
.
T Consensus 78 ~ 78 (308)
T cd05292 78 N 78 (308)
T ss_pred C
Confidence 4
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.028 Score=55.25 Aligned_cols=86 Identities=10% Similarity=0.043 Sum_probs=58.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-||.|+|+|..|...+..+.+. +.++. ++|++.....++.++.|+. ++. +..+.+. ++|+|+++.--...
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~-G~~V~-~~D~~~~~~~~~l~~~gi~----~~~~~~~~~~~~--~~d~vV~Spgi~~~ 87 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSEL-GCDVV-VADDNETARHKLIEVTGVA----DISTAEASDQLD--SFSLVVTSPGWRPD 87 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHC-CCEEE-EECCChHHHHHHHHhcCcE----EEeCCCchhHhc--CCCEEEeCCCCCCC
Confidence 4799999999999888888877 56644 7888766555555566763 332 2234444 48988876544344
Q ss_pred HHHHHHHHHcCCeEEE
Q 018020 87 VKWAISVAQKKKHLLM 102 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~ 102 (362)
.+.+.+|.++|.+|+-
T Consensus 88 ~p~~~~a~~~gi~v~~ 103 (473)
T PRK00141 88 SPLLVDAQSQGLEVIG 103 (473)
T ss_pred CHHHHHHHHCCCceee
Confidence 4667788889988874
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=54.60 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=47.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----CC--CCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----FP--PDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~~--~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+.||+|||+|.+|...+..+...+-..-+.++|+++++++..+.++. +. ..+....|+++ ++ +.|+|+|+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~--~adivvita 79 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TA--NSKVVIVTA 79 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hC--CCCEEEECC
Confidence 57999999999999888777655544445589998876655444321 11 12233468887 44 499999953
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0071 Score=56.73 Aligned_cols=135 Identities=10% Similarity=0.064 Sum_probs=77.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcE---EEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAV---LSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~---vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~ 82 (362)
+||||||+ |..|...++.+..+|++. ++.+.+. ...... -.++- ....+++ +.++ +. ++|+|+.++|
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~--~sg~~~-~~f~g-~~~~v~~~~~~~~-~~--~~Divf~a~~ 74 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTS--QAGGAA-PSFGG-KEGTLQDAFDIDA-LK--KLDIIITCQG 74 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecch--hhCCcc-cccCC-CcceEEecCChhH-hc--CCCEEEECCC
Confidence 78999997 888999999777788887 7764332 112221 11211 1112332 2233 33 5999999999
Q ss_pred CcccHHHHHHHHHcCCe-EEEeC----------CCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCC
Q 018020 83 TSMHVKWAISVAQKKKH-LLMEK----------PMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQR 151 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~-V~~EK----------P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~ 151 (362)
.....+++.++.++|.. +.++- |+....--.+.|.. ..+.|.++..+-+.-=......++-+. +.+.
T Consensus 75 ~~~s~~~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~-~~~~g~~iIanPnC~tt~~~laL~PL~-~~~~ 152 (369)
T PRK06598 75 GDYTNEVYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDD-ALANGVKTFVGGNCTVSLMLMALGGLF-KNDL 152 (369)
T ss_pred HHHHHHHHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHh-hhhcCCCEEEcCChHHHHHHHHHHHHH-hcCC
Confidence 99999999999999974 44432 33222222223333 334564444333332233444566676 5444
Q ss_pred c
Q 018020 152 F 152 (362)
Q Consensus 152 i 152 (362)
|
T Consensus 153 i 153 (369)
T PRK06598 153 V 153 (369)
T ss_pred c
Confidence 4
|
|
| >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.02 Score=55.72 Aligned_cols=71 Identities=23% Similarity=0.350 Sum_probs=51.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~ 82 (362)
.-|+.|||+|..|...+..+++.| +++++|++|.++... ..-.|+ .++.+ +.+++...++|-|+++.|
T Consensus 125 ~~rvLIvGag~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~---~~i~g~----pVlg~~~~l~~~i~~~~id~ViIa~p 197 (445)
T TIGR03025 125 LRRVLIVGTGEAARELAAALSRNPDLGYRVVGFVDDRPSDR---VEVAGL----PVLGKLDDLVELVRAHRVDEVIIALP 197 (445)
T ss_pred CCcEEEEECCHHHHHHHHHHhhCccCCeEEEEEEeCCcccc---cccCCC----cccCCHHHHHHHHHhCCCCEEEEecC
Confidence 357999999999999999998765 589999998765432 122343 35544 455666678999999887
Q ss_pred Ccc
Q 018020 83 TSM 85 (362)
Q Consensus 83 ~~~ 85 (362)
...
T Consensus 198 ~~~ 200 (445)
T TIGR03025 198 LSE 200 (445)
T ss_pred ccc
Confidence 654
|
Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.011 Score=56.88 Aligned_cols=64 Identities=27% Similarity=0.297 Sum_probs=48.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.+|+..++.++.. +++|+ .+|+.+.. ...+ +....+++|+++. .|+|++.+|-.
T Consensus 151 gktvGIiG~G~IG~~vA~~~~~f-Gm~V~-~~d~~~~~-----~~~~----~~~~~~l~ell~~--sDiVslh~Plt 214 (409)
T PRK11790 151 GKTLGIVGYGHIGTQLSVLAESL-GMRVY-FYDIEDKL-----PLGN----ARQVGSLEELLAQ--SDVVSLHVPET 214 (409)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCCccc-----ccCC----ceecCCHHHHHhh--CCEEEEcCCCC
Confidence 35899999999999999999877 78877 57775321 1111 2345699999986 89999998854
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.017 Score=48.63 Aligned_cols=74 Identities=12% Similarity=0.071 Sum_probs=49.2
Q ss_pred EEEEEeccHH--HHHHHHHHhcCCC--cEEEEEEcCCHHHHH-------HHHHHcCCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 10 RFGIIGAADI--ARKLSRAITLAPN--AVLSAVASRSLEKAT-------NFAKANNFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 10 ~v~iiG~G~~--g~~~~~~~~~~~~--~~vv~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
||.|||+|+. .......+...+. ..-+.++|++++|++ .+.++.+.+..+...+|.+|.|++ .|+|+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g--ADfVi 78 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG--ADFVI 78 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT--ESEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC--CCEEE
Confidence 7999999985 3334444444443 223559999998865 445666765555668999999996 99999
Q ss_pred EcCCCcc
Q 018020 79 LPLPTSM 85 (362)
Q Consensus 79 i~~~~~~ 85 (362)
+......
T Consensus 79 ~~irvGg 85 (183)
T PF02056_consen 79 NQIRVGG 85 (183)
T ss_dssp E---TTH
T ss_pred EEeeecc
Confidence 9877653
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.12 Score=47.72 Aligned_cols=83 Identities=18% Similarity=0.126 Sum_probs=56.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~ 89 (362)
+++|+|+|.+|...+..++.. ++..+.++|+++++++.. ..+. +++ .++- ....+|+|+-++......+.
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~-G~~~v~~~~~~~~rl~~a-~~~~------~i~-~~~~-~~~g~Dvvid~~G~~~~~~~ 216 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAA-GGSPPAVWETNPRRRDGA-TGYE------VLD-PEKD-PRRDYRAIYDASGDPSLIDT 216 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHhh-hhcc------ccC-hhhc-cCCCCCEEEECCCCHHHHHH
Confidence 689999999999888877766 677677788888776543 3332 121 1211 22368999999998766666
Q ss_pred HHHHHHcC-CeEEE
Q 018020 90 AISVAQKK-KHLLM 102 (362)
Q Consensus 90 ~~~al~~g-k~V~~ 102 (362)
+.++++.| +-|++
T Consensus 217 ~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 217 LVRRLAKGGEIVLA 230 (308)
T ss_pred HHHhhhcCcEEEEE
Confidence 77777666 44544
|
|
| >PLN02237 glyceraldehyde-3-phosphate dehydrogenase B | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.034 Score=53.04 Aligned_cols=98 Identities=20% Similarity=0.159 Sum_probs=64.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcCCH-HHHHHHHH---HcC-CCCC---------------CcccC--
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASRSL-EKATNFAK---ANN-FPPD---------------AKVYG-- 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~~~-~~~~~~~~---~~~-~~~~---------------~~~~~-- 63 (362)
++||||-|+|.||+..++.+... ++++||+|=|... +.+..+-+ -+| ++.. +.++.
T Consensus 75 ~ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~~ 154 (442)
T PLN02237 75 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSNR 154 (442)
T ss_pred eEEEEEECCChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEcC
Confidence 58999999999999888876533 6799999988542 33332211 012 1000 11111
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++.++ ..+.++|+|+-||......+.+...+++| |-|++=-|
T Consensus 155 dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP 198 (442)
T PLN02237 155 DPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAP 198 (442)
T ss_pred CchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCC
Confidence 22222 22247999999999999999999999999 66665444
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.011 Score=47.89 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=47.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-----CCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-----FPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|||+|||+ |..|...+..+...+-..-+.++|+++++++..+.++. .+....+..+..+.++ +.|+|+++..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALK--DADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGT--TESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccc--cccEEEEecc
Confidence 68999999 99999988888766544435599999887776554431 0011233333344444 4999999754
Q ss_pred C
Q 018020 83 T 83 (362)
Q Consensus 83 ~ 83 (362)
.
T Consensus 79 ~ 79 (141)
T PF00056_consen 79 V 79 (141)
T ss_dssp T
T ss_pred c
Confidence 3
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.019 Score=53.31 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=45.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHH-------HHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFA-------KANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
++.||+|||+|.+|...+..+...+-.+ +.++|+++++++..+ ...+.+..+....|+++ ++ +.|+|++
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~-i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~-l~--~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGD-VVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYED-IA--GSDVVIV 80 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHH-hC--CCCEEEE
Confidence 5679999999999998777665443246 669999887543111 11222212333478864 44 4999999
Q ss_pred cC
Q 018020 80 PL 81 (362)
Q Consensus 80 ~~ 81 (362)
+.
T Consensus 81 ta 82 (321)
T PTZ00082 81 TA 82 (321)
T ss_pred CC
Confidence 65
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.012 Score=54.07 Aligned_cols=69 Identities=17% Similarity=0.251 Sum_probs=50.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
--+|||+|+|.||+..+..|..- + ..+.-+.|++.+.+. +.+++ .-+.|+++++.. .|+|+|+.|-..+
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~F-g-~~i~y~~r~~~~~~~-~~~~~-----~~~~d~~~~~~~--sD~ivv~~pLt~~ 230 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPF-G-CVILYHSRTQLPPEE-AYEYY-----AEFVDIEELLAN--SDVIVVNCPLTKE 230 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhc-c-ceeeeecccCCchhh-HHHhc-----ccccCHHHHHhh--CCEEEEecCCCHH
Confidence 35899999999999999999885 5 445466676554443 33443 127799999986 9999999987543
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=52.90 Aligned_cols=72 Identities=22% Similarity=0.244 Sum_probs=49.5
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--C---CCCCcc-cCCHHHHhcCCCCcEEEEcCCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--F---PPDAKV-YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~---~~~~~~-~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
||+|||+|.+|...+..+...+-..-+.++|+++++++..+.++. . +..+.. ..++++ +. +.|+|++++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~--~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CK--DADIVVITAGA 78 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hC--CCCEEEEccCC
Confidence 799999999999988888766434234589999988887766641 0 011122 355555 44 59999998876
Q ss_pred c
Q 018020 84 S 84 (362)
Q Consensus 84 ~ 84 (362)
.
T Consensus 79 ~ 79 (306)
T cd05291 79 P 79 (306)
T ss_pred C
Confidence 4
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.051 Score=49.19 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=28.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+.-||+|||+|..|...+..|... ++.=+.++|.+.
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~a-GVG~i~lvD~D~ 61 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARL-GIGKFTIADFDV 61 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence 456899999999999999999877 554555777643
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0066 Score=56.77 Aligned_cols=85 Identities=14% Similarity=0.164 Sum_probs=58.8
Q ss_pred EEEEEec-cHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGA-ADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~~ 85 (362)
||+|||+ |..|...++.|.+ +|.++++.++.. ....+.+. ..+.. ..+.+++ +.++ ++|+|+.++|...
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~-~~~g~~~~-~~~~~---~~~~~~~~~~~~--~~D~v~~a~g~~~ 73 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASD-RSAGRKVT-FKGKE---LEVNEAKIESFE--GIDIALFSAGGSV 73 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEecc-ccCCCeee-eCCee---EEEEeCChHHhc--CCCEEEECCCHHH
Confidence 6899995 8889999999977 788888766543 22222222 11211 2233322 2233 6999999999999
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
..+++.+++++|..|+
T Consensus 74 s~~~a~~~~~~G~~VI 89 (339)
T TIGR01296 74 SKEFAPKAAKCGAIVI 89 (339)
T ss_pred HHHHHHHHHHCCCEEE
Confidence 9999999999998544
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.016 Score=53.58 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=49.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CC--CCCccc-CCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FP--PDAKVY-GSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~--~~~~~~-~~~~e~l~~~~~D~V~i~~ 81 (362)
+..||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. .+ ..+.+. +++++ ++ +.|+|+++.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~--~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CK--DADLVVITA 81 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hC--CCCEEEEec
Confidence 457999999999999888887766555445599998887766655442 10 112333 45555 44 499999964
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
-
T Consensus 82 g 82 (315)
T PRK00066 82 G 82 (315)
T ss_pred C
Confidence 4
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.085 Score=52.99 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=75.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH--HHHhcC---CCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY--EALLDD---KDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~e~l~~---~~~D~V~i~~~~ 83 (362)
=+|.|+|+|.+|+..++.+++. +.+++ +.|.|+++.+.+.+ .|.+ .++.|. ++.|++ .+.|+|++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~-g~~vv-vId~d~~~~~~~~~-~g~~---~i~GD~~~~~~L~~a~i~~a~~viv~~~~ 491 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA-GIPLV-VIETSRTRVDELRE-RGIR---AVLGNAANEEIMQLAHLDCARWLLLTIPN 491 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC-CCCEE-EEECCHHHHHHHHH-CCCe---EEEcCCCCHHHHHhcCccccCEEEEEcCC
Confidence 4789999999999999999876 56655 77899999888764 5654 233332 233432 478999999998
Q ss_pred cccHHHHHHHHHc---CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 84 SMHVKWAISVAQK---KKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 84 ~~h~~~~~~al~~---gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
+.....+..++++ .+++++ -+.+.++.+.+ ++.|....+ +|.....+++.
T Consensus 492 ~~~~~~iv~~~~~~~~~~~iia---r~~~~~~~~~l----~~~Gad~vv------~p~~~~a~~i~ 544 (558)
T PRK10669 492 GYEAGEIVASAREKRPDIEIIA---RAHYDDEVAYI----TERGANQVV------MGEREIARTML 544 (558)
T ss_pred hHHHHHHHHHHHHHCCCCeEEE---EECCHHHHHHH----HHcCCCEEE------ChHHHHHHHHH
Confidence 7665433333322 256665 24455555444 456665544 66665554443
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.028 Score=52.16 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=46.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+++||+|||+|.+|...+..+...+-.+ +.++|+++++++..+-+ .+....+...++++ .+. +.|+|++
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~--~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIK--DSDVVVI 79 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhC--CCCEEEE
Confidence 5679999999999998777766553356 66999987654432221 11111222346777 444 4899999
Q ss_pred cC
Q 018020 80 PL 81 (362)
Q Consensus 80 ~~ 81 (362)
+.
T Consensus 80 ta 81 (319)
T PTZ00117 80 TA 81 (319)
T ss_pred CC
Confidence 87
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.024 Score=54.73 Aligned_cols=113 Identities=12% Similarity=0.024 Sum_probs=67.8
Q ss_pred eEEEEEeccHHHHH--HHHHH---hcCCCcEEEEEEcCCHHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADIARK--LSRAI---TLAPNAVLSAVASRSLEKATN-------FAKANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~g~~--~~~~~---~~~~~~~vv~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+||+|||+|++|.. ++..+ ...++.+|+ ++|+++++++. ..+..+.+..+...+|..+.+++ .|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evv-LvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d--ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIA-LMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG--ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEE-EECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC--CCE
Confidence 68999999998753 33344 334455655 99999987663 22223332234456788888886 899
Q ss_pred EEEcCCCc-ccH---HHHHHHHHcCCe-EEEeC--C-----CCCCHHHHHHHHHHHHHcC
Q 018020 77 VYLPLPTS-MHV---KWAISVAQKKKH-LLMEK--P-----MALNVAEFDVILNACEENG 124 (362)
Q Consensus 77 V~i~~~~~-~h~---~~~~~al~~gk~-V~~EK--P-----~~~~~~~~~~l~~~a~~~~ 124 (362)
|+++.... .+. .-.+-.++.|.- -..|- | .-.|....+++.+..++..
T Consensus 79 Vv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~ 138 (431)
T PRK15076 79 VINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVC 138 (431)
T ss_pred EeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHC
Confidence 99987765 331 223446677743 11133 1 2335666666666666654
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.14 Score=46.71 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=86.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--CCcccCCHHH---Hh----cCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--DAKVYGSYEA---LL----DDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~e---~l----~~~~~D~V~i 79 (362)
-||.|+|+|.+|-.....++...-.+|+ +.|..++|++. |+++|... ......+.++ ++ .+..+|+++-
T Consensus 171 s~vLV~GAGPIGl~t~l~Aka~GA~~VV-i~d~~~~Rle~-Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~d 248 (354)
T KOG0024|consen 171 SKVLVLGAGPIGLLTGLVAKAMGASDVV-ITDLVANRLEL-AKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFD 248 (354)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCcEE-EeecCHHHHHH-HHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEE
Confidence 5899999999999888888888545544 88998877664 55588531 0011122333 22 2356999999
Q ss_pred cCCCcccHHHHHHHHHcCCeE-EEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh-hHHHHHHhhcCCCCcc
Q 018020 80 PLPTSMHVKWAISVAQKKKHL-LMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNP-RTAQMKEFVSDPQRFG 153 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V-~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p-~~~~~k~~i~~~g~iG 153 (362)
||-...-.+.+..|++.|-++ +++ +....-+.--+.-..++..+ .| .+||.- .|...-++| ++|++-
T Consensus 249 CsG~~~~~~aai~a~r~gGt~vlvg--~g~~~~~fpi~~v~~kE~~~---~g-~fry~~~~y~~ai~li-~sGki~ 317 (354)
T KOG0024|consen 249 CSGAEVTIRAAIKATRSGGTVVLVG--MGAEEIQFPIIDVALKEVDL---RG-SFRYCNGDYPTAIELV-SSGKID 317 (354)
T ss_pred ccCchHHHHHHHHHhccCCEEEEec--cCCCccccChhhhhhheeee---ee-eeeeccccHHHHHHHH-HcCCcC
Confidence 999999999999999998553 333 11222222122223344222 22 346655 788889999 788773
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.044 Score=51.21 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=28.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
..||+|||+|..|...+..|.+. ++.-+.++|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 56899999999999999999877 665566888864
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.023 Score=54.11 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=54.4
Q ss_pred ceeEEEEEeccHHHH--HHHHHHhc---CCCcEEEEEEcCCHHHHH-------HHHHHcCCCCCCcccCCHHHHhcCCCC
Q 018020 7 AAIRFGIIGAADIAR--KLSRAITL---APNAVLSAVASRSLEKAT-------NFAKANNFPPDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~--~~~~~~~~---~~~~~vv~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~e~l~~~~~ 74 (362)
+++||++||+|+... ...-.+.. .|..+ ++++|.+++|.+ ++.++.|.+-.+..++|.++.|++ .
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~e-l~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g--A 78 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRE-LALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG--A 78 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcce-EEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC--C
Confidence 479999999998643 23333433 34455 559999998765 456667776445678999999997 9
Q ss_pred cEEEEcCCCcc
Q 018020 75 DAVYLPLPTSM 85 (362)
Q Consensus 75 D~V~i~~~~~~ 85 (362)
|+|+.+-....
T Consensus 79 dfVi~~~rvG~ 89 (442)
T COG1486 79 DFVITQIRVGG 89 (442)
T ss_pred CEEEEEEeeCC
Confidence 99998766543
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.018 Score=57.30 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=49.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|+..... .+..++. ... +++|+++. .|+|++++|..
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~f-G~~V~-~~d~~~~~~--~~~~~g~----~~~-~l~ell~~--aDiV~l~lP~t 205 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAF-GMKVI-AYDPYISPE--RAAQLGV----ELV-SLDELLAR--ADFITLHTPLT 205 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EECCCCChh--HHHhcCC----EEE-cHHHHHhh--CCEEEEccCCC
Confidence 45799999999999999999876 78876 677753211 1234454 233 89999986 89999999964
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.048 Score=48.54 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=74.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHH---HHHcC--C---C---CCCcccCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNF---AKANN--F---P---PDAKVYGSY 65 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~---~~~~~--~---~---~~~~~~~~~ 65 (362)
+..||+|.|+|..|...+..|.+. +.+|++|+|. +.+.+..+ .++.+ + + ++.. +-+.
T Consensus 37 ~g~~vaIqGfGnVG~~~a~~L~e~-GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~-~~~~ 114 (254)
T cd05313 37 KGKRVAISGSGNVAQYAAEKLLEL-GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAK-YFEG 114 (254)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCE-EeCC
Confidence 457999999999999999988877 7999999993 33333221 12222 0 0 0112 2366
Q ss_pred HHHhcCCCCcEEEEc-CCCcccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 66 EALLDDKDIDAVYLP-LPTSMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
++++.. ++|+.+=| +.+.-+.+-+.+..+.+..+++|- |++ . ++. +..+++|+.+..
T Consensus 115 ~~~~~~-~~DIliPcAl~~~I~~~na~~i~~~~ak~I~EgAN~p~t--~-~a~---~~L~~rGI~vvP 175 (254)
T cd05313 115 KKPWEV-PCDIAFPCATQNEVDAEDAKLLVKNGCKYVAEGANMPCT--A-EAI---EVFRQAGVLFAP 175 (254)
T ss_pred cchhcC-CCcEEEeccccccCCHHHHHHHHHcCCEEEEeCCCCCCC--H-HHH---HHHHHCCcEEEC
Confidence 677765 79988864 556677777777777788889885 432 2 333 455666776643
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.029 Score=54.69 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=60.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~~~ 83 (362)
|+|.|+|+|.+|...+..|.+. +.+++ ++|+++++.+.+.+..+++ .++ .+.+.+.+ -.++|+|+++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~-g~~v~-vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~ 75 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE-NNDVT-VIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDS 75 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEE-EEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence 4799999999999999999876 67776 7789999888877655543 122 22232321 2469999999998
Q ss_pred cccHHHHHHHH-Hc-C-CeEEE
Q 018020 84 SMHVKWAISVA-QK-K-KHLLM 102 (362)
Q Consensus 84 ~~h~~~~~~al-~~-g-k~V~~ 102 (362)
...-..+...+ +. + .++++
T Consensus 76 ~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 76 DETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred hHHHHHHHHHHHHhcCCCeEEE
Confidence 76554443333 33 4 45655
|
|
| >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.017 Score=56.41 Aligned_cols=71 Identities=24% Similarity=0.449 Sum_probs=51.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~ 82 (362)
.-|+.|||+|..|...++.+++.+ +++++|++|.++...... .|+ .++.+ +.++++..++|-|+|+.|
T Consensus 128 ~~rvLIiGag~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~---~gv----pVlg~~~dl~~~i~~~~vd~ViIA~p 200 (451)
T TIGR03023 128 LRRVLIVGAGELGRRLAERLARNPELGYRVVGFFDDRPDARTGV---RGV----PVLGKLDDLEELIREGEVDEVYIALP 200 (451)
T ss_pred CCcEEEEeCCHHHHHHHHHHHhCccCCcEEEEEEeCCCcccccc---CCC----CccCCHHHHHHHHHhcCCCEEEEeeC
Confidence 357999999999999999987765 589999998765432211 344 35544 555666778999999988
Q ss_pred Ccc
Q 018020 83 TSM 85 (362)
Q Consensus 83 ~~~ 85 (362)
...
T Consensus 201 ~~~ 203 (451)
T TIGR03023 201 LAA 203 (451)
T ss_pred ccc
Confidence 754
|
Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.047 Score=51.76 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=51.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~~~~~D~V~i~~~ 82 (362)
.-+|.|||+|.+|...+..++.. +++ |.++|+++++++.++..++..- ...+ .++.+.+. +.|+|+.+++
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~-V~v~d~~~~~~~~l~~~~g~~v-~~~~~~~~~l~~~l~--~aDvVI~a~~ 239 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GAT-VTILDINIDRLRQLDAEFGGRI-HTRYSNAYEIEDAVK--RADLLIGAVL 239 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCe-EEEEECCHHHHHHHHHhcCcee-EeccCCHHHHHHHHc--cCCEEEEccc
Confidence 46799999999999999999888 577 5578999999888888776310 0012 23445555 5899998874
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.038 Score=55.91 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=70.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH--HHhcC---CCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE--ALLDD---KDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--e~l~~---~~~D~V~i~~~ 82 (362)
+.+|.|+|+|.+|+..++.+.+. +.+++ +.|.|+++.+.+. ++|.+ .+|.|.. ++|+. .+.|+|+++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vv-vID~d~~~v~~~~-~~g~~---v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-KMRIT-VLERDISAVNLMR-KYGYK---VYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-CCCEE-EEECCHHHHHHHH-hCCCe---EEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 46899999999999999998866 56666 7789999988774 46654 3443333 34432 57899999999
Q ss_pred CcccHHHHHHHHH-cC--CeEEEeCCCCCCHHHHHHHHH
Q 018020 83 TSMHVKWAISVAQ-KK--KHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 83 ~~~h~~~~~~al~-~g--k~V~~EKP~~~~~~~~~~l~~ 118 (362)
++.....+...++ .. .+|++ -+.|.++++++.+
T Consensus 474 d~~~n~~i~~~~r~~~p~~~Iia---Ra~~~~~~~~L~~ 509 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPHLHILA---RARGRVEAHELLQ 509 (601)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEE---EeCCHHHHHHHHh
Confidence 9876655544443 32 46665 3567777655543
|
|
| >PRK12853 glucose-6-phosphate 1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.13 Score=50.23 Aligned_cols=54 Identities=17% Similarity=0.308 Sum_probs=42.4
Q ss_pred hcCCCCcEEEEcCCCcccHHHHHHHHHcC-----CeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKK-----KHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h~~~~~~al~~g-----k~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
++...--+.++++||..-..++...-+.| .-|++|||++.|++.|++|.+...+
T Consensus 105 l~~~~~~lfYLA~PP~~f~~i~~~L~~~~l~~~~~RiviEKPFG~Dl~SA~~Ln~~l~~ 163 (482)
T PRK12853 105 LGPGGNPVFYLAVPPSLFAPVVENLGAAGLLPEGRRVVLEKPFGHDLASARALNATLAK 163 (482)
T ss_pred hcCCCcEEEEEECCHHHHHHHHHHHHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 43323348889999988777777666664 4799999999999999999887776
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.022 Score=52.75 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=45.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-+|||||+|.+|+..++.++.. +++|++ +|+... . .. .-+.+++++|+. .|+|++++|-.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~f-gm~V~~-~~~~~~-~------~~-----~~~~~l~ell~~--sDiv~l~lPlt 208 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAF-GMRVLI-GQLPGR-P------AR-----PDRLPLDELLPQ--VDALTLHCPLT 208 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhC-CCEEEE-ECCCCC-c------cc-----ccccCHHHHHHh--CCEEEECCCCC
Confidence 4899999999999999999876 788774 566421 0 01 124589999986 89999999954
|
|
| >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.055 Score=52.91 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=49.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH---HHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE---ALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---e~l~~~~~D~V~i~~~ 82 (362)
.-|+.|||+|..|...+..+++.| +++++|++|.++. . +.+ +.++.+.+ +++...++|-|+|+.|
T Consensus 143 ~rrVLIvGaG~~g~~l~~~L~~~~~~g~~vVGfiDdd~~------~--g~~--VpvlG~~~dL~~~v~~~~IdeViIAip 212 (463)
T PRK10124 143 KRMVAVAGDLPAGQMLLESFRNEPWLGFEVVGVYHDPKP------G--GVS--NDWAGNLQQLVEDAKAGKIHNVYIAMS 212 (463)
T ss_pred CCcEEEEECCHHHHHHHHHHhcCccCCeEEEEEEeCCcc------c--cCC--CCcCCCHHHHHHHHHhCCCCEEEEeCC
Confidence 357999999999999999998876 5899999987641 1 221 12355544 4566678999998887
Q ss_pred Ccc
Q 018020 83 TSM 85 (362)
Q Consensus 83 ~~~ 85 (362)
...
T Consensus 213 ~~~ 215 (463)
T PRK10124 213 MCD 215 (463)
T ss_pred Ccc
Confidence 654
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.036 Score=51.07 Aligned_cols=71 Identities=13% Similarity=0.051 Sum_probs=45.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-Hc------CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-AN------NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-~~------~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+||+|||+|.+|...+..+......+ +.++|++++.++..+- .+ ..........|+++ ++ +.|+|+|+.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~-VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~--~aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELAD-LVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TA--NSDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCe-EEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hC--CCCEEEEcC
Confidence 58999999999998888776653336 5588886654442221 11 11112233578887 44 489999987
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
+.
T Consensus 78 g~ 79 (305)
T TIGR01763 78 GL 79 (305)
T ss_pred CC
Confidence 63
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.046 Score=46.78 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=51.4
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--CCCcc--cCCHH---HHhcCCCCcEEEE
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--PDAKV--YGSYE---ALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--~~~~~--~~~~~---e~l~~~~~D~V~i 79 (362)
..++.|+|+ |.+|...+..+.+. +.+++ +++|+.++++.++++++-. ..... ..+.+ +.++ +.|+|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~-l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~diVi~ 103 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-GARVV-LVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK--GADVVFA 103 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh--cCCEEEE
Confidence 468999995 99999888888765 46665 6689999988887765210 00111 23443 4454 5899999
Q ss_pred cCCCccc
Q 018020 80 PLPTSMH 86 (362)
Q Consensus 80 ~~~~~~h 86 (362)
+||....
T Consensus 104 at~~g~~ 110 (194)
T cd01078 104 AGAAGVE 110 (194)
T ss_pred CCCCCce
Confidence 9987665
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.021 Score=52.83 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=47.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.+|+..++.++.. +++|++ +|+... .... .-+.+++++|+. .|+|++++|-.
T Consensus 147 gktvgIiG~G~IG~~va~~l~~f-g~~V~~-~~~~~~------~~~~-----~~~~~l~ell~~--sDiv~l~~Plt 208 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQAL-GMKVLY-AEHKGA------SVCR-----EGYTPFEEVLKQ--ADIVTLHCPLT 208 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcC-CCEEEE-ECCCcc------cccc-----cccCCHHHHHHh--CCEEEEcCCCC
Confidence 35899999999999999998876 788875 566421 1111 125699999996 99999999854
|
|
| >PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.039 Score=51.27 Aligned_cols=99 Identities=19% Similarity=0.105 Sum_probs=68.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC----CCcEEEEEEcC--CHHHHHHHHH---HcCC-C---------------------
Q 018020 8 AIRFGIIGAADIARKLSRAITLA----PNAVLSAVASR--SLEKATNFAK---ANNF-P--------------------- 56 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~----~~~~vv~v~d~--~~~~~~~~~~---~~~~-~--------------------- 56 (362)
++||||-|+|.||+..++.+... ++++||+|-|+ +.+....+-+ -+|. +
T Consensus 3 ~ikVgINGFGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~in 82 (361)
T PTZ00434 3 PIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLVVN 82 (361)
T ss_pred ceEEEEECcChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEEEC
Confidence 58999999999999888886543 57999999995 4443322211 0111 0
Q ss_pred -CCCccc---CCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 57 -PDAKVY---GSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 57 -~~~~~~---~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+.+.++ .+++++ ..+.++|+|+=||--....+-+..=|++| |-|++--|.
T Consensus 83 g~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~ 138 (361)
T PTZ00434 83 GHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPA 138 (361)
T ss_pred CEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCC
Confidence 011222 344444 23457999999999999888888899999 899997774
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.11 Score=41.30 Aligned_cols=96 Identities=9% Similarity=0.098 Sum_probs=63.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-CCcccCCHHHHhcCCCCcEEEEcCCCc-c
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-DAKVYGSYEALLDDKDIDAVYLPLPTS-M 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~e~l~~~~~D~V~i~~~~~-~ 85 (362)
..||..||+| .|...+..|.+. +.+|+ ..|.++++.+.+.+ .++.. -..+++---++-. +.|+|+-.-|+. .
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~-G~~Vi-aIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~--~a~liysirpp~el 90 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKES-GFDVI-VIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYK--NAKLIYSIRPPRDL 90 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHC-CCEEE-EEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHh--cCCEEEEeCCCHHH
Confidence 4789999999 577788888876 78877 57899987766544 33320 0012222223333 589999776665 5
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCH
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNV 110 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~ 110 (362)
|..++.-|-+-|..+++ ||++.+.
T Consensus 91 ~~~~~~la~~~~~~~~i-~~l~~e~ 114 (134)
T PRK04148 91 QPFILELAKKINVPLII-KPLSGEE 114 (134)
T ss_pred HHHHHHHHHHcCCCEEE-EcCCCCC
Confidence 66777777777877766 7887654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.6 Score=43.45 Aligned_cols=132 Identities=14% Similarity=0.106 Sum_probs=77.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcE-EEEEEcCCHHHHHHHHHHcCCCCCCccc--CC--HHHH---hcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVY--GS--YEAL---LDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~-vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~--~~e~---l~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. +++ ++ +.++++++.+. ++++|.. .++ .+ .+++ .....+|+|+-+
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~-G~~~vi-~~~~~~~~~~~-~~~~ga~---~~i~~~~~~~~~~~~~~~~~~~d~vid~ 238 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARAL-GAEDVI-GVDPSPERLEL-AKALGAD---FVINSGQDDVQEIRELTSGAGADVAIEC 238 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEE-EECCCHHHHHH-HHHhCCC---EEEcCCcchHHHHHHHhCCCCCCEEEEC
Confidence 4789999999999888888776 566 66 46777776654 5677753 122 11 2233 333469999999
Q ss_pred CCCcccHHHHHHHHHcCCeEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 81 LPTSMHVKWAISVAQKKKHLL-MEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~-~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
+........+..+++.+-.++ +--+-..+.. +....-.+++.+.-..... ...+.++-+++ .+|.+
T Consensus 239 ~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~----~~~~~~~~~~~i~g~~~~~-~~~~~~~~~~~-~~g~i 305 (339)
T cd08239 239 SGNTAARRLALEAVRPWGRLVLVGEGGELTIE----VSNDLIRKQRTLIGSWYFS-VPDMEECAEFL-ARHKL 305 (339)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEEcCCCCcccC----cHHHHHhCCCEEEEEecCC-HHHHHHHHHHH-HcCCC
Confidence 988777677778887775544 3222111111 1111122444443222211 23566777777 66665
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.13 Score=44.33 Aligned_cols=35 Identities=9% Similarity=0.069 Sum_probs=28.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+..||+|||+|.+|...+..+.+. ++.=+.++|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 457899999999999999999877 66434588887
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.039 Score=52.45 Aligned_cols=73 Identities=22% Similarity=0.195 Sum_probs=48.9
Q ss_pred eeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHH-HHHHHHHcCC--------CCCCcccCCHHHHhcCCCCcEE
Q 018020 8 AIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEK-ATNFAKANNF--------PPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~-~~~~~~~~~~--------~~~~~~~~~~~e~l~~~~~D~V 77 (362)
--+|||||+|.+|+..++.+. .. +++|+ .+|+.... ...+...++. +.+...+.+++++|+. .|+|
T Consensus 165 gktvGIiG~G~IG~~vA~~l~~~f-Gm~V~-~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~--sDiV 240 (386)
T PLN02306 165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE--ADVI 240 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC-CCEEE-EECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh--CCEE
Confidence 358999999999999999875 45 78876 67876432 2222222321 0001224699999986 8999
Q ss_pred EEcCCCc
Q 018020 78 YLPLPTS 84 (362)
Q Consensus 78 ~i~~~~~ 84 (362)
++++|-.
T Consensus 241 ~lh~Plt 247 (386)
T PLN02306 241 SLHPVLD 247 (386)
T ss_pred EEeCCCC
Confidence 9988843
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.074 Score=45.87 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=55.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~~ 85 (362)
.-+|.|||.|.+|...+..|.+. +.+|+ |++++. +....++.+..+. -.-..++ +.++ +.|+|+.+|.+..
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~-VIs~~~~~~l~~l~~~~~i~---~~~~~~~~~~l~--~adlViaaT~d~e 82 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-GAHIV-VISPELTENLVKLVEEGKIR---WKQKEFEPSDIV--DAFLVIAATNDPR 82 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEE-EEcCCCCHHHHHHHhCCCEE---EEecCCChhhcC--CceEEEEcCCCHH
Confidence 45899999999999888888876 46766 455543 3344555443221 0111222 1233 5899999999987
Q ss_pred cHHHHHHHHHcCCeEEE
Q 018020 86 HVKWAISVAQKKKHLLM 102 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~ 102 (362)
--..+....++++.|-+
T Consensus 83 lN~~i~~~a~~~~lvn~ 99 (202)
T PRK06718 83 VNEQVKEDLPENALFNV 99 (202)
T ss_pred HHHHHHHHHHhCCcEEE
Confidence 65555555577765543
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.067 Score=52.37 Aligned_cols=87 Identities=10% Similarity=0.060 Sum_probs=59.2
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCccc-CCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVY-GSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..||.|||.|..|.. .++.|++. +.+|. +.|... +..+.+ ++.|+. ++ ....+.++ ++|+|+++.--+
T Consensus 7 ~~~v~viG~G~sG~s~~a~~L~~~-G~~V~-~~D~~~~~~~~~l-~~~gi~----~~~~~~~~~~~--~~d~vv~spgi~ 77 (461)
T PRK00421 7 IKRIHFVGIGGIGMSGLAEVLLNL-GYKVS-GSDLKESAVTQRL-LELGAI----IFIGHDAENIK--DADVVVYSSAIP 77 (461)
T ss_pred CCEEEEEEEchhhHHHHHHHHHhC-CCeEE-EECCCCChHHHHH-HHCCCE----EeCCCCHHHCC--CCCEEEECCCCC
Confidence 457999999999998 68888877 78866 577543 223333 344653 32 22334454 589888766555
Q ss_pred ccHHHHHHHHHcCCeEEEe
Q 018020 85 MHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~E 103 (362)
...+.+.+|.++|.+|+.|
T Consensus 78 ~~~~~~~~a~~~~i~i~~~ 96 (461)
T PRK00421 78 DDNPELVAARELGIPVVRR 96 (461)
T ss_pred CCCHHHHHHHHCCCcEEeH
Confidence 6667788889999999865
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.051 Score=51.72 Aligned_cols=35 Identities=14% Similarity=0.159 Sum_probs=28.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+..||.|||+|..|...+..|... ++.-+.++|.+
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~-Gvg~i~lvD~d 168 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAA-GVGTLGIVDHD 168 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 356899999999999999999877 55445577876
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.063 Score=51.87 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=53.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc-H
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH-V 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h-~ 87 (362)
-+|+|+|+|.+|+..+..++.. +++|+ ++++++.++.. +...|.. +.+.++++.. .|+|+.++.+..- .
T Consensus 255 KtVvViGyG~IGr~vA~~aka~-Ga~VI-V~e~dp~r~~e-A~~~G~~-----vv~leEal~~--ADVVI~tTGt~~vI~ 324 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAA-GARVI-VTEIDPICALQ-ALMEGYQ-----VLTLEDVVSE--ADIFVTTTGNKDIIM 324 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchhhHH-HHhcCCe-----eccHHHHHhh--CCEEEECCCCccchH
Confidence 5799999999999999999877 77755 68888766443 3334432 2367888764 8999886665321 2
Q ss_pred HHHHHHHHcC
Q 018020 88 KWAISVAQKK 97 (362)
Q Consensus 88 ~~~~~al~~g 97 (362)
......++.|
T Consensus 325 ~e~L~~MK~G 334 (477)
T PLN02494 325 VDHMRKMKNN 334 (477)
T ss_pred HHHHhcCCCC
Confidence 3444455555
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.18 Score=44.71 Aligned_cols=79 Identities=10% Similarity=0.175 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 45 KATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
..++.++++|++--+.+ ..+.+.+.+ .+|++-|++.+..+.+++.++.+.||+|++-|+...++++....++...+
T Consensus 70 ~L~~~~~~~Gl~~~Tev~d~~~v~~~~e--~vdilqIgs~~~~n~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~ 147 (250)
T PRK13397 70 YLHEVCQEFGLLSVSEIMSERQLEEAYD--YLDVIQVGARNMQNFEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQD 147 (250)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHh--cCCEEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 35677889998611111 133444444 59999999999999999999999999999999999999999999999988
Q ss_pred cCC
Q 018020 123 NGV 125 (362)
Q Consensus 123 ~~~ 125 (362)
.|.
T Consensus 148 ~Gn 150 (250)
T PRK13397 148 TGK 150 (250)
T ss_pred cCC
Confidence 654
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.067 Score=54.34 Aligned_cols=102 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH--HHhc---CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE--ALLD---DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--e~l~---~~~~D~V~i~~~ 82 (362)
+-+|.|+|+|.+|+..++.+++. +.+++ +.|.|+++.+.+.+ +|.+ .+|.|.. ++|+ -.+.|+|+++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vv-vID~d~~~v~~~~~-~g~~---v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMT-VLDHDPDHIETLRK-FGMK---VFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEE-EEECCHHHHHHHHh-cCCe---EEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 46899999999999999999876 56666 66999999888754 5653 3443333 2343 257899999999
Q ss_pred CcccHHHHHHHHH-cC--CeEEEeCCCCCCHHHHHHHHH
Q 018020 83 TSMHVKWAISVAQ-KK--KHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 83 ~~~h~~~~~~al~-~g--k~V~~EKP~~~~~~~~~~l~~ 118 (362)
++.....+...++ .. .++++ -+.|.+++.++.+
T Consensus 474 d~~~n~~i~~~ar~~~p~~~iia---Ra~d~~~~~~L~~ 509 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPHLQIIA---RARDVDHYIRLRQ 509 (621)
T ss_pred CHHHHHHHHHHHHHhCCCCeEEE---EECCHHHHHHHHH
Confidence 8765555544443 32 34554 3456666555533
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.35 Score=45.65 Aligned_cols=87 Identities=8% Similarity=0.079 Sum_probs=57.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
+|.|.|+|.+|...+..++.. +.+++++. .+.++...+++++|.. .+. .+.+++.+. ..+|+|+-++.....
T Consensus 186 ~VlV~G~G~vG~~avq~Ak~~-Ga~vi~~~-~~~~~~~~~~~~~Ga~---~vi~~~~~~~~~~~~~~~D~vid~~g~~~~ 260 (360)
T PLN02586 186 HLGVAGLGGLGHVAVKIGKAF-GLKVTVIS-SSSNKEDEAINRLGAD---SFLVSTDPEKMKAAIGTMDYIIDTVSAVHA 260 (360)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEe-CCcchhhhHHHhCCCc---EEEcCCCHHHHHhhcCCCCEEEECCCCHHH
Confidence 688999999999888888777 67776554 4445556666778753 121 222222211 258999998886555
Q ss_pred HHHHHHHHHcCCeEE
Q 018020 87 VKWAISVAQKKKHLL 101 (362)
Q Consensus 87 ~~~~~~al~~gk~V~ 101 (362)
.+.+.++++.|-.+.
T Consensus 261 ~~~~~~~l~~~G~iv 275 (360)
T PLN02586 261 LGPLLGLLKVNGKLI 275 (360)
T ss_pred HHHHHHHhcCCcEEE
Confidence 666778887774443
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.54 Score=43.99 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=61.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--C--CHHHH---hcCCCCc-EEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--G--SYEAL---LDDKDID-AVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~--~~~e~---l~~~~~D-~V~i~ 80 (362)
-+|.|.|+|.+|...+..++.. +++.+.+.++++++.+. ++++|.. .++ . +.+++ +....+| +|+-+
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~~~-~~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~d~~v~d~ 236 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDINSEKLAL-AKSLGAM---QTFNSREMSAPQIQSVLRELRFDQLILET 236 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHHH-HHHcCCc---eEecCcccCHHHHHHHhcCCCCCeEEEEC
Confidence 4789999999999888888877 67755567788877664 5677742 111 1 22333 3334678 88888
Q ss_pred CCCcccHHHHHHHHHcCCe-EEEe
Q 018020 81 LPTSMHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~-V~~E 103 (362)
+....+...+.++++.|-. |++-
T Consensus 237 ~G~~~~~~~~~~~l~~~G~iv~~G 260 (347)
T PRK10309 237 AGVPQTVELAIEIAGPRAQLALVG 260 (347)
T ss_pred CCCHHHHHHHHHHhhcCCEEEEEc
Confidence 8887788888889988744 4443
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.092 Score=50.19 Aligned_cols=113 Identities=16% Similarity=0.147 Sum_probs=71.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHHHHHHHHcCCC---CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKATNFAKANNFP---PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~ 73 (362)
+-.||+|.|+|..|+..+..|.+. +++|++|+|.+ .+.+.+..++.+.- ++.. .-+.++++.. +
T Consensus 205 ~g~~VaIqGfGnVG~~~A~~L~e~-GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~-~i~~~e~l~~-~ 281 (410)
T PLN02477 205 AGQTFVIQGFGNVGSWAAQLIHEK-GGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGD-PIDPDDILVE-P 281 (410)
T ss_pred cCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccce-EecCccceec-c
Confidence 357999999999999999988776 79999999987 66665554444311 1111 2255677765 7
Q ss_pred CcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 74 IDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 74 ~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+|+.+=| +.+.-+.+-+.+ -+..+++|--=.....++.+ ..+++|+.+.
T Consensus 282 ~DvliP~Al~~~I~~~na~~---i~ak~I~egAN~p~t~ea~~---~L~~rGI~~~ 331 (410)
T PLN02477 282 CDVLIPAALGGVINKENAAD---VKAKFIVEAANHPTDPEADE---ILRKKGVVVL 331 (410)
T ss_pred ccEEeeccccccCCHhHHHH---cCCcEEEeCCCCCCCHHHHH---HHHHCCcEEE
Confidence 9988865 444455555544 26678888521112223433 3456676654
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.075 Score=43.74 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=44.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-++.++|.|..|+..+..++.. +++++ |++.+|-++-+... -|+ . ..+.++++.. .|+++-+|.+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~-Ga~V~-V~e~DPi~alqA~~-dGf----~-v~~~~~a~~~--adi~vtaTG~~ 89 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGL-GARVT-VTEIDPIRALQAAM-DGF----E-VMTLEEALRD--ADIFVTATGNK 89 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHT-T-EEE-EE-SSHHHHHHHHH-TT-----E-EE-HHHHTTT---SEEEE-SSSS
T ss_pred CEEEEeCCCcccHHHHHHHhhC-CCEEE-EEECChHHHHHhhh-cCc----E-ecCHHHHHhh--CCEEEECCCCc
Confidence 3789999999999999999988 67755 89999976654433 233 2 3478898875 89999888874
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.25 Score=43.95 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=54.3
Q ss_pred cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHH---cCCeEEEeCCCCCC
Q 018020 33 AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQ---KKKHLLMEKPMALN 109 (362)
Q Consensus 33 ~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~---~gk~V~~EKP~~~~ 109 (362)
.+|+ +++|++++++.+++++|+ ..+.+.+++++. .|+|+++++|..-.+++ ..++ .+.++++---.+.+
T Consensus 10 ~~I~-v~~R~~e~~~~l~~~~g~----~~~~~~~e~~~~--aDiIiLaVkP~~i~~vl-~~l~~~~~~~~~ivS~~agi~ 81 (245)
T TIGR00112 10 YDII-VINRSPEKLAALAKELGI----VASSDAQEAVKE--ADVVFLAVKPQDLEEVL-SELKSEKGKDKLLISIAAGVT 81 (245)
T ss_pred CeEE-EEcCCHHHHHHHHHHcCc----EEeCChHHHHhh--CCEEEEEeCHHHHHHHH-HHHhhhccCCCEEEEecCCCC
Confidence 4544 899999999999999885 467888888875 89999999965555544 3333 22234443344668
Q ss_pred HHHHHHHH
Q 018020 110 VAEFDVIL 117 (362)
Q Consensus 110 ~~~~~~l~ 117 (362)
+++.+++.
T Consensus 82 ~~~l~~~~ 89 (245)
T TIGR00112 82 LEKLSQLL 89 (245)
T ss_pred HHHHHHHc
Confidence 88887765
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.1 Score=50.93 Aligned_cols=90 Identities=10% Similarity=0.088 Sum_probs=61.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHH---HcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAK---ANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~---~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+..+|.|+|+|.+|...+..|.+. +.+|+ ++|++. +..+...+ +.|+. ....+..++.+. ++|+|++++-
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~-G~~V~-~~d~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~--~~d~vv~~~g 77 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKL-GAKVI-LTDEKEEDQLKEALEELGELGIE--LVLGEYPEEFLE--GVDLVVVSPG 77 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchHHHHHHHHHHHhcCCE--EEeCCcchhHhh--cCCEEEECCC
Confidence 357899999999999999999877 68866 566653 33332222 23432 111222334443 5999999888
Q ss_pred CcccHHHHHHHHHcCCeEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~ 102 (362)
.....+.+..|-+.|++|+.
T Consensus 78 ~~~~~~~~~~a~~~~i~~~~ 97 (450)
T PRK14106 78 VPLDSPPVVQAHKKGIEVIG 97 (450)
T ss_pred CCCCCHHHHHHHHCCCcEEe
Confidence 77777788888889998874
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.34 Score=45.53 Aligned_cols=134 Identities=15% Similarity=0.208 Sum_probs=94.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC----------------C----CcccCCHHHHh
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP----------------D----AKVYGSYEALL 69 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~----------------~----~~~~~~~~e~l 69 (362)
+|.|+|+|..|...+..++++-..+ +|++.|...+.+.+.+.+.... + -.+|.+++++.
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~~-vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNCR-VGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCce-eeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 6899999999988899998885444 7799998888887766653210 0 13567777776
Q ss_pred cCCCCcEEEEcCCCcccHHHHH----HHHHcCCeEEEeCCCCCCHHHHHHHHHHHH------------------------
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAI----SVAQKKKHLLMEKPMALNVAEFDVILNACE------------------------ 121 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~----~al~~gk~V~~EKP~~~~~~~~~~l~~~a~------------------------ 121 (362)
.+ -|.+|.|+|.+.=..+.. +.|+.=|+|++=.|.--+-.-.+.++....
T Consensus 82 g~--WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~ 159 (429)
T PF10100_consen 82 GE--WDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPN 159 (429)
T ss_pred cc--ccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCCcc
Confidence 64 899999999876544444 466666888876665444444444443322
Q ss_pred -----HcCCEEEEeeecccChhHHHHHHhh
Q 018020 122 -----ENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 122 -----~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
.-+.++.+|.+.--++.+.++++++
T Consensus 160 ~vlt~~vK~kiYigSt~~~s~~~~~l~~~~ 189 (429)
T PF10100_consen 160 RVLTTAVKKKIYIGSTHSNSPELDKLCRLL 189 (429)
T ss_pred eehhhhhhceEEEEeCCCCChHHHHHHHHH
Confidence 1135688898888899999999998
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.05 Score=50.99 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=46.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----CCCCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----FPPDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~~~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
.||+|||+|.+|...+..+...+-+.-+.++|++++.++..+.++. +.+.+.+. .++++ ++ +.|+|+|+.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~--daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TA--GSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hC--CCCEEEECCC
Confidence 7999999999999887777655444445589998876655444321 11112343 46666 44 4999999743
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.15 Score=45.34 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=81.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCC--C--C-----CCcccCCHHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNF--P--P-----DAKVYGSYEA 67 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~--~--~-----~~~~~~~~~e 67 (362)
+-.+|+|-|+|..|...+..|.+. +.+++++.|. +.+.+.+..++.+. . + +...+++-++
T Consensus 31 ~g~~v~IqGfG~VG~~~a~~l~~~-Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 109 (244)
T PF00208_consen 31 EGKRVAIQGFGNVGSHAARFLAEL-GAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDE 109 (244)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHT-TEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccccc
Confidence 458999999999999999999888 8999998664 33455555556553 1 0 1111122237
Q ss_pred HhcCCCCcEEEEcC-CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 68 LLDDKDIDAVYLPL-PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 68 ~l~~~~~D~V~i~~-~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
+++. ++|+.+-|. ++.-+.+-+...+++|..++||=-=.....++.+ ..+++|+.+...+..
T Consensus 110 il~~-~~DiliP~A~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~---~L~~rGI~viPD~~a 172 (244)
T PF00208_consen 110 ILSV-DCDILIPCALGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE---ILRERGILVIPDFLA 172 (244)
T ss_dssp GGTS-SSSEEEEESSSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH---HHHHTT-EEE-HHHH
T ss_pred cccc-cccEEEEcCCCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH---HHHHCCCEEEcchhh
Confidence 8875 899999764 6677888888788999999999622222244443 778889887765443
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.057 Score=45.42 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=58.3
Q ss_pred EEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH---HHHhcCCCCcEEEEcCCCccc
Q 018020 11 FGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY---EALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~---~e~l~~~~~D~V~i~~~~~~h 86 (362)
|.|+|+ |.+|+..++.|.+.+ .+|++++ |++++.+. ..++..-.--+.+. .+.++ ++|+|+.+.++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~-R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV-RSPSKAED---SPGVEIIQGDLFDPDSVKAALK--GADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE-SSGGGHHH---CTTEEEEESCTTCHHHHHHHHT--TSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe-cCchhccc---ccccccceeeehhhhhhhhhhh--hcchhhhhhhhhcc
Confidence 689996 999999999998884 8999877 66666655 22221000012344 44455 59999988765433
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
+...++.+.++++++|++
T Consensus 74 ----------------------~~~~~~~~~~a~~~~~~~ 91 (183)
T PF13460_consen 74 ----------------------DVDAAKNIIEAAKKAGVK 91 (183)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTSS
T ss_pred ----------------------cccccccccccccccccc
Confidence 177778888888887763
|
... |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.1 Score=48.76 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=29.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+.-||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 356899999999999999998877 664455888764
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.14 Score=46.07 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=72.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-------------------HHHHHHHHHHc-CCCCCCcc-----
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-------------------LEKATNFAKAN-NFPPDAKV----- 61 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-------------------~~~~~~~~~~~-~~~~~~~~----- 61 (362)
+..+|.|||+|..|...+..|.+. ++.=+.++|.+ ..+++.+++.. .+.|.+.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~ 107 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDD 107 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEec
Confidence 457899999999999999998776 32223355543 12233333332 12233222
Q ss_pred ---cCCHHHHhcCCCCcEEEEcCCC-cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe--eeccc
Q 018020 62 ---YGSYEALLDDKDIDAVYLPLPT-SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG--TMWVH 135 (362)
Q Consensus 62 ---~~~~~e~l~~~~~D~V~i~~~~-~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~--~~~r~ 135 (362)
.++.++++. .++|+|+.++.+ .....+...|.+++++++.---.+ .+-.-..+.++ +....
T Consensus 108 ~i~~e~~~~ll~-~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag------------~k~dp~~~~~~di~~t~~ 174 (268)
T PRK15116 108 FITPDNVAEYMS-AGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAG------------GQIDPTQIQVVDLAKTIQ 174 (268)
T ss_pred ccChhhHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcc------------cCCCCCeEEEEeeecccC
Confidence 123445553 258888888766 445556667777787777531110 11122334444 34447
Q ss_pred ChhHHHHHHhhc
Q 018020 136 NPRTAQMKEFVS 147 (362)
Q Consensus 136 ~p~~~~~k~~i~ 147 (362)
+|..+.+|+.++
T Consensus 175 ~pla~~~R~~lr 186 (268)
T PRK15116 175 DPLAAKLRERLK 186 (268)
T ss_pred ChHHHHHHHHHH
Confidence 899999999883
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=49.97 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=68.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-CCCCCCccc---CCHHHHh--cCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-NFPPDAKVY---GSYEALL--DDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~---~~~~e~l--~~~~~D~V~i~~ 81 (362)
+.+|.|+|+|.+|...++.|.+. +.+++ ++|.++++.+.+.+++ +.+ .++ .+.+.+. .-.+.|+|++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~-~~~v~-vid~~~~~~~~~~~~~~~~~---~i~gd~~~~~~L~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE-GYSVK-LIERDPERAEELAEELPNTL---VLHGDGTDQELLEEEGIDEADAFIALT 305 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHCCCCe---EEECCCCCHHHHHhcCCccCCEEEECC
Confidence 57899999999999999999875 66765 6789999888887764 332 122 3344332 225789999998
Q ss_pred CCcccHHHH-HHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 82 PTSMHVKWA-ISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 82 ~~~~h~~~~-~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++...--.+ ..|-+.| ++|++. +.+.+... ..+..|....
T Consensus 306 ~~~~~n~~~~~~~~~~~~~~ii~~---~~~~~~~~----~~~~~g~~~v 347 (453)
T PRK09496 306 NDDEANILSSLLAKRLGAKKVIAL---VNRPAYVD----LVEGLGIDIA 347 (453)
T ss_pred CCcHHHHHHHHHHHHhCCCeEEEE---ECCcchHH----HHHhcCCCEE
Confidence 876433333 2233444 456653 33444432 3455665443
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.3 Score=45.70 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=54.4
Q ss_pred eEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC---c
Q 018020 9 IRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT---S 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~---~ 84 (362)
=+|+|+|+|.+|...+..+++ ....+++ ++|+++++++.+ ++.+.. + ..+++.+...+|+|+-++.. .
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi-~~~~~~~k~~~a-~~~~~~-----~-~~~~~~~~~g~d~viD~~G~~~~~ 236 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLV-VFGKHQEKLDLF-SFADET-----Y-LIDDIPEDLAVDHAFECVGGRGSQ 236 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEE-EEeCcHhHHHHH-hhcCce-----e-ehhhhhhccCCcEEEECCCCCccH
Confidence 378999999999888887775 4445655 567887776654 445421 1 22333333358999999884 3
Q ss_pred ccHHHHHHHHHcC-CeEEE
Q 018020 85 MHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~ 102 (362)
.....+.++++.| +-|++
T Consensus 237 ~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 237 SAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred HHHHHHHHhCcCCcEEEEE
Confidence 3455566677666 43444
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.11 Score=50.95 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=57.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-----HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-----KATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-||+|+|.|..|...+..|++. ++++. ++|.++. ..+.+ ++.|+. +....+..+.+. ++|+|+++..-
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~-G~~V~-~~D~~~~~~~~~~~~~l-~~~gi~--~~~~~~~~~~~~--~~dlVV~Spgi 87 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKL-GAKVT-AFDKKSEEELGEVSNEL-KELGVK--LVLGENYLDKLD--GFDVIFKTPSM 87 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCEEE-EECCCCCccchHHHHHH-HhCCCE--EEeCCCChHHhc--cCCEEEECCCC
Confidence 4899999999999888888877 67755 6886532 11222 334542 011122334444 48998887444
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~E 103 (362)
....+.+..|.+.|.+|+.|
T Consensus 88 ~~~~p~~~~a~~~~i~i~s~ 107 (458)
T PRK01710 88 RIDSPELVKAKEEGAYITSE 107 (458)
T ss_pred CCCchHHHHHHHcCCcEEec
Confidence 45567888889999999865
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.56 Score=43.32 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=57.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
=+|.|.|+|.+|...+..++.. +++++.+.+ +.++.+.+ +++|.. .+.+.++. ....+|+++.+++...+.+
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~-g~~v~~~~~-~~~~~~~~-~~~g~~----~~~~~~~~-~~~~vD~vi~~~~~~~~~~ 240 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQ-GAEVFAFTR-SGEHQELA-RELGAD----WAGDSDDL-PPEPLDAAIIFAPVGALVP 240 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEcC-ChHHHHHH-HHhCCc----EEeccCcc-CCCcccEEEEcCCcHHHHH
Confidence 3678889999998887777766 688776654 44544444 777752 22222222 2246899999887778889
Q ss_pred HHHHHHHcCCeEE
Q 018020 89 WAISVAQKKKHLL 101 (362)
Q Consensus 89 ~~~~al~~gk~V~ 101 (362)
.+.++++.+-.+.
T Consensus 241 ~~~~~l~~~G~~v 253 (329)
T cd08298 241 AALRAVKKGGRVV 253 (329)
T ss_pred HHHHHhhcCCEEE
Confidence 9999998764433
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.1 Score=39.69 Aligned_cols=84 Identities=14% Similarity=0.164 Sum_probs=52.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc-
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM- 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~- 85 (362)
+..+|.|||.|..|..-++.|.+. ++++..+. +..+..+ +... -.-..+++.++ +.|+|+++|++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis-~~~~~~~---~~i~-----~~~~~~~~~l~--~~~lV~~at~d~~~ 73 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEA-GAKVTVIS-PEIEFSE---GLIQ-----LIRREFEEDLD--GADLVFAATDDPEL 73 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCC-TBEEEEEE-SSEHHHH---TSCE-----EEESS-GGGCT--TESEEEE-SS-HHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEC-Cchhhhh---hHHH-----HHhhhHHHHHh--hheEEEecCCCHHH
Confidence 357899999999999999999877 58877554 4421111 1111 12234455555 4899999998754
Q ss_pred cHHHHHHHHHcCCeEEE
Q 018020 86 HVKWAISVAQKKKHLLM 102 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~ 102 (362)
...+...|-++|+.|-+
T Consensus 74 n~~i~~~a~~~~i~vn~ 90 (103)
T PF13241_consen 74 NEAIYADARARGILVNV 90 (103)
T ss_dssp HHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhhCCEEEEE
Confidence 45555556567887764
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.76 Score=43.67 Aligned_cols=90 Identities=12% Similarity=0.093 Sum_probs=57.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
-+|.+.|+|.+|...+..++.. +++++++. ++.++...+++++|... +..+.+.+++.+. ..+|+|+-++....-.
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~-Ga~Vi~~~-~~~~~~~~~a~~lGa~~-~i~~~~~~~v~~~~~~~D~vid~~G~~~~~ 256 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAF-GLRVTVIS-RSSEKEREAIDRLGADS-FLVTTDSQKMKEAVGTMDFIIDTVSAEHAL 256 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHc-CCeEEEEe-CChHHhHHHHHhCCCcE-EEcCcCHHHHHHhhCCCcEEEECCCcHHHH
Confidence 4688999999999888888777 67777554 44444455667787531 1112222233221 2589999998776555
Q ss_pred HHHHHHHHcCCeEE
Q 018020 88 KWAISVAQKKKHLL 101 (362)
Q Consensus 88 ~~~~~al~~gk~V~ 101 (362)
..+.++++.|-.+.
T Consensus 257 ~~~~~~l~~~G~iv 270 (375)
T PLN02178 257 LPLFSLLKVSGKLV 270 (375)
T ss_pred HHHHHhhcCCCEEE
Confidence 66677777764443
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.076 Score=49.41 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=59.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+|.|+|+ |.||...++.+....+..-+.+++|+++++..++++++.. . ..++++.+.. +|+|+.++.....
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~---~-i~~l~~~l~~--aDiVv~~ts~~~~ 228 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG---K-ILSLEEALPE--ADIVVWVASMPKG 228 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc---c-HHhHHHHHcc--CCEEEECCcCCcC
Confidence 468999998 8999999998864434323447789999999998887521 2 3467787775 9999988765443
Q ss_pred HHHHHHHHHcCCeEEEeC
Q 018020 87 VKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EK 104 (362)
..+-..-++ ..-++|+=
T Consensus 229 ~~I~~~~l~-~~~~viDi 245 (340)
T PRK14982 229 VEIDPETLK-KPCLMIDG 245 (340)
T ss_pred CcCCHHHhC-CCeEEEEe
Confidence 212222332 23566654
|
|
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.19 Score=48.44 Aligned_cols=116 Identities=14% Similarity=0.145 Sum_probs=77.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHHHHHH---HHc-C----C---CCCCcccCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKATNFA---KAN-N----F---PPDAKVYGSY 65 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~~~~~---~~~-~----~---~~~~~~~~~~ 65 (362)
+-.||+|=|+|+.|...+..+.+. +.+|++|+|.+ .+++..+. +.. + . .++++ +-+-
T Consensus 236 ~Gk~VaVqG~GnVg~~aa~~L~e~-GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~-~~~~ 313 (454)
T PTZ00079 236 EGKTVVVSGSGNVAQYAVEKLLQL-GAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAK-YVPG 313 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcE-EeCC
Confidence 357999999999999888888877 89999999987 66553322 111 1 0 01222 2234
Q ss_pred HHHhcCCCCcEEEE-cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 66 EALLDDKDIDAVYL-PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 66 ~e~l~~~~~D~V~i-~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++++. .++|+.+= ++.+..+.+-+...++.|..+++|--=..+..+|.+ ..+++|+.+.
T Consensus 314 ~~~~~-~~cDI~iPcA~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~eA~~---~L~~~GI~~~ 373 (454)
T PTZ00079 314 KKPWE-VPCDIAFPCATQNEINLEDAKLLIKNGCKLVAEGANMPTTIEATH---LFKKNGVIFC 373 (454)
T ss_pred cCccc-CCccEEEeccccccCCHHHHHHHHHcCCeEEEecCCCCCCHHHHH---HHHHCCcEEE
Confidence 56665 37898885 577778888888888999999999522222224444 4466776654
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.056 Score=52.07 Aligned_cols=90 Identities=10% Similarity=0.027 Sum_probs=56.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH--HHH-HHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA--TNF-AKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~--~~~-~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..||+|+|+|..|...++.|.+. +.++. ++|.++... ... ...-++. ....+... ..-.++|+|+.+---+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~-G~~v~-v~D~~~~~~~~~~~~~~~~~i~---~~~g~~~~-~~~~~~d~vV~SPGi~ 80 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKL-GAEVT-VSDDRPAPEGLAAQPLLLEGIE---VELGSHDD-EDLAEFDLVVKSPGIP 80 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHC-CCeEE-EEcCCCCccchhhhhhhccCce---eecCccch-hccccCCEEEECCCCC
Confidence 68999999999999999999888 57766 566443321 111 1112332 11122222 2234589998754434
Q ss_pred ccHHHHHHHHHcCCeEEEe
Q 018020 85 MHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~E 103 (362)
.-.+++.+|.++|.+|+.|
T Consensus 81 ~~~p~v~~A~~~gi~i~~d 99 (448)
T COG0771 81 PTHPLVEAAKAAGIEIIGD 99 (448)
T ss_pred CCCHHHHHHHHcCCcEEeH
Confidence 3344899999999999864
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.98 Score=42.02 Aligned_cols=85 Identities=20% Similarity=0.203 Sum_probs=57.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
=+|.|.|+|.+|...+..++.. ++.+++ .++++++. ++++++|.. .+.+..+. .....|++++++.......
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~-G~~vi~-~~~~~~~~-~~a~~~Ga~---~vi~~~~~--~~~~~d~~i~~~~~~~~~~ 238 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQ-GATVHV-MTRGAAAR-RLALALGAA---SAGGAYDT--PPEPLDAAILFAPAGGLVP 238 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHC-CCeEEE-EeCChHHH-HHHHHhCCc---eecccccc--CcccceEEEECCCcHHHHH
Confidence 3689999999998777777766 677664 56777764 467778853 22221111 1124788888887766778
Q ss_pred HHHHHHHcCCeEE
Q 018020 89 WAISVAQKKKHLL 101 (362)
Q Consensus 89 ~~~~al~~gk~V~ 101 (362)
.+.++++.|-.+.
T Consensus 239 ~~~~~l~~~G~~v 251 (329)
T TIGR02822 239 PALEALDRGGVLA 251 (329)
T ss_pred HHHHhhCCCcEEE
Confidence 8888888875544
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.74 Score=38.75 Aligned_cols=111 Identities=20% Similarity=0.107 Sum_probs=69.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcccCCHHHHhcCC-CCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAKVYGSYEALLDDK-DIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~e~l~~~-~~D~V~i~~~~~ 84 (362)
-++.=||||. |.--....+..|..+++| .|+++++.+.. +++||++.=..+-.+.-+.|.+. ++|+|+|.-. .
T Consensus 36 ~~l~DIGaGt-Gsi~iE~a~~~p~~~v~A-Ie~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg-~ 112 (187)
T COG2242 36 DRLWDIGAGT-GSITIEWALAGPSGRVIA-IERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG-G 112 (187)
T ss_pred CEEEEeCCCc-cHHHHHHHHhCCCceEEE-EecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC-C
Confidence 3566688876 333333335678888775 57888776544 55677642122346666777664 6999999766 3
Q ss_pred cc---HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 MH---VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 ~h---~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.- .+.+...|+.|-.++.- +.+++.+..+++..++.|.
T Consensus 113 ~i~~ile~~~~~l~~ggrlV~n---aitlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 113 NIEEILEAAWERLKPGGRLVAN---AITLETLAKALEALEQLGG 153 (187)
T ss_pred CHHHHHHHHHHHcCcCCeEEEE---eecHHHHHHHHHHHHHcCC
Confidence 33 33344444556566653 6688888888888877776
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.1 Score=42.23 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=58.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
-++.|+|+|.+|...+..++.. +++++.+. +++++...+.+++|.. .+..+.+.+++.+. ..+|+|+-++......
T Consensus 182 ~~vlV~G~G~vG~~av~~Ak~~-G~~vi~~~-~~~~~~~~~~~~~Ga~-~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 258 (357)
T PLN02514 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTVIS-SSDKKREEALEHLGAD-DYLVSSDAAEMQEAADSLDYIIDTVPVFHPL 258 (357)
T ss_pred CeEEEEcccHHHHHHHHHHHHC-CCeEEEEe-CCHHHHHHHHHhcCCc-EEecCCChHHHHHhcCCCcEEEECCCchHHH
Confidence 4688899999999888888766 67776554 5566666666778753 11112222233221 2589999998866566
Q ss_pred HHHHHHHHcC-CeEEE
Q 018020 88 KWAISVAQKK-KHLLM 102 (362)
Q Consensus 88 ~~~~~al~~g-k~V~~ 102 (362)
+.+..+++.| +-|.+
T Consensus 259 ~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 259 EPYLSLLKLDGKLILM 274 (357)
T ss_pred HHHHHHhccCCEEEEE
Confidence 6677788776 44444
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.12 Score=48.93 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=27.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+.-||.|||+|..|...+..|... ++.-+.++|.+
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~-Gvg~i~ivD~D 74 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASA-GVGTITLIDDD 74 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEeCC
Confidence 356899999999999999999877 55445577765
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.072 Score=49.10 Aligned_cols=45 Identities=13% Similarity=0.288 Sum_probs=34.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
.|||+|||+|.+|..++-.|.+. +.+|+ +++|..++.+++.++.|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~-G~~V~-lv~r~~~~~~~i~~~~G 46 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARA-GLPVR-LILRDRQRLAAYQQAGG 46 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhC-CCCeE-EEEechHHHHHHhhcCC
Confidence 47899999999999988888766 45655 56777777777766543
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.059 Score=52.70 Aligned_cols=89 Identities=21% Similarity=0.320 Sum_probs=65.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~~~ 84 (362)
...|+.|||+|..|...++.++..++...||+.|.+++.... +-.|+| ++. ++.+++++..++-++|+-|..
T Consensus 115 ~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~--~i~Gv~----V~g~~~i~~~v~~~~~~~iiiAips~ 188 (588)
T COG1086 115 NRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGM--KIRGVP----VLGRIEIERVVEELGIQLILIAIPSA 188 (588)
T ss_pred CCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCC--EEecee----eechhHHHHHHHHcCCceEEEecCCC
Confidence 358999999999999999999999999999999998754321 122443 332 377788888899999999887
Q ss_pred cc---HHHHHHHHHcCCeEE
Q 018020 85 MH---VKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h---~~~~~~al~~gk~V~ 101 (362)
.+ .++...+-+.|..|-
T Consensus 189 ~~~~~~~i~~~l~~~~~~v~ 208 (588)
T COG1086 189 SQEERRRILLRLARTGIAVR 208 (588)
T ss_pred CHHHHHHHHHHHHhcCCcEE
Confidence 65 444555666664443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.41 Score=42.15 Aligned_cols=141 Identities=12% Similarity=0.118 Sum_probs=76.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-------------------HHHHHHHHHcC-CCCCCcc--c--
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-------------------EKATNFAKANN-FPPDAKV--Y-- 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-------------------~~~~~~~~~~~-~~~~~~~--~-- 62 (362)
+..||.|||+|..|...+..|.+. ++.=+-++|.+. .+++.+++++. +.|.+++ +
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~-GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~ 88 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARS-GVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE 88 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence 357899999999999999999777 443333666432 12222232221 1122211 1
Q ss_pred ----CCHHHHhcCCCCcEEEEcCCCcc-cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe--eeccc
Q 018020 63 ----GSYEALLDDKDIDAVYLPLPTSM-HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG--TMWVH 135 (362)
Q Consensus 63 ----~~~~e~l~~~~~D~V~i~~~~~~-h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~--~~~r~ 135 (362)
++.++++. .++|+|+.|+.+.. ...+...|.+.+++++.---.+. +-....+.+. +....
T Consensus 89 ~i~~~~~~~l~~-~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~------------~~dp~~i~i~di~~t~~ 155 (231)
T cd00755 89 FLTPDNSEDLLG-GDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGG------------KLDPTRIRVADISKTSG 155 (231)
T ss_pred ecCHhHHHHHhc-CCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcC------------CCCCCeEEEccEecccc
Confidence 23445553 25788888766543 34455566677777665321110 0011222333 34446
Q ss_pred ChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 136 ~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
+|..+.+|+.+++.|.. ..+.+-|+.
T Consensus 156 ~pla~~~R~~Lrk~~~~---~~~~~v~S~ 181 (231)
T cd00755 156 DPLARKVRKRLRKRGIF---FGVPVVYST 181 (231)
T ss_pred CcHHHHHHHHHHHcCCC---CCeEEEeCC
Confidence 89999999999443332 234455543
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.2 Score=40.44 Aligned_cols=112 Identities=13% Similarity=0.186 Sum_probs=58.9
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcC--CCCcEEEEc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDD--KDIDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~--~~~D~V~i~ 80 (362)
||.|||+|.+|...+..|... ++.-+.++|.+.-....+.+++ |.+ + .+.+.+.+.. +.+++-.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~---K-a~~~~~~l~~~~p~v~i~~~~ 75 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GVGKITLIDFDTVELSNLNRQFLARQADIGKP---K-AEVAARRLNELNPGVNVTAVP 75 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCcCcchhhccccCChhHCCCh---H-HHHHHHHHHHHCCCcEEEEEe
Confidence 589999999999999999877 5544557887643333332222 211 1 1122222222 223333222
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
... -.......++ +-.+++. ...+.+.-..+.+.|+++++++....
T Consensus 76 ~~~--~~~~~~~~~~-~~diVi~--~~d~~~~~~~l~~~~~~~~i~~i~~~ 121 (143)
T cd01483 76 EGI--SEDNLDDFLD-GVDLVID--AIDNIAVRRALNRACKELGIPVIDAG 121 (143)
T ss_pred eec--ChhhHHHHhc-CCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 211 1111122332 3345543 34456666777788888887776543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.61 Score=43.12 Aligned_cols=98 Identities=12% Similarity=0.142 Sum_probs=55.2
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||.|+|+ |++|...++.|.+. +.+|++++ |+.++...+. ..++. -+..-.+++.+.++ ++|+|+-+....
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~-R~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~al~--g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE-GYQVRCLV-RNLRKASFLK-EWGAELVYGDLSLPETLPPSFK--GVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEE-cChHHhhhHh-hcCCEEEECCCCCHHHHHHHHC--CCCEEEECCCCC
Confidence 47999995 99999999998876 68877664 6655443332 22321 00011123444555 589998765321
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.. +.. .-...+......++++|+++|+
T Consensus 76 ~~----------~~~----~~~~~~~~~~~~l~~aa~~~gv 102 (317)
T CHL00194 76 PS----------DLY----NAKQIDWDGKLALIEAAKAAKI 102 (317)
T ss_pred CC----------Ccc----chhhhhHHHHHHHHHHHHHcCC
Confidence 10 000 0112345556667777777665
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.31 Score=44.99 Aligned_cols=115 Identities=11% Similarity=0.075 Sum_probs=77.3
Q ss_pred eeEEEEEec-cHHHHHHHHHHhc---CCCcEEEEEEcCCHHHHHHHHHHcCCCCCC-------cccC-----CHHHHhcC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITL---APNAVLSAVASRSLEKATNFAKANNFPPDA-------KVYG-----SYEALLDD 71 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~---~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~e~l~~ 71 (362)
+.-+.|.|+ |+.|+.....+.+ .++.. .||+.|+++++++..+..+.+.+. .+.+ |++||...
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~s-lavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~ 83 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLS-LAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ 83 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCce-EEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh
Confidence 788999997 7778876666544 34555 569999999998877766532111 1122 37777765
Q ss_pred CCCcEEEEcCCCccc--HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHH----HHHHHcCCEEE
Q 018020 72 KDIDAVYLPLPTSMH--VKWAISVAQKKKHLLMEKPMALNVAEFDVIL----NACEENGVQLM 128 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h--~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~----~~a~~~~~~~~ 128 (362)
.-+|+.|.-|..| ..++++|+++|.|-+ + ++--++=.++|. +.|+++|+.+.
T Consensus 84 --~~vivN~vGPyR~hGE~VVkacienG~~~v-D--ISGEP~f~E~mq~kYhd~A~ekGVYIV 141 (423)
T KOG2733|consen 84 --ARVIVNCVGPYRFHGEPVVKACIENGTHHV-D--ISGEPQFMERMQLKYHDLAKEKGVYIV 141 (423)
T ss_pred --hEEEEeccccceecCcHHHHHHHHcCCcee-c--cCCCHHHHHHHHHHHHHHHHhcCeEEE
Confidence 8889988888644 678889999998744 2 444444444443 46788886643
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.063 Score=43.74 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=48.5
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CC-------CcccCCHHHHhcCCCCcEEEEc
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PD-------AKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~-------~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|+|+|+|.+|..++-.|.+ .+.++. ++++.+ +.+.+.++ |+. +. .....+. ......+|+|+|+
T Consensus 1 I~I~G~GaiG~~~a~~L~~-~g~~V~-l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~ 74 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQ-AGHDVT-LVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVA 74 (151)
T ss_dssp EEEESTSHHHHHHHHHHHH-TTCEEE-EEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-
T ss_pred CEEECcCHHHHHHHHHHHH-CCCceE-EEEccc-cHHhhhhe-eEEEEecccceecccccccCcc--hhccCCCcEEEEE
Confidence 7899999999999999977 577755 666766 66665443 321 00 0011111 1222469999999
Q ss_pred CCCcccHHHHHHH
Q 018020 81 LPTSMHVKWAISV 93 (362)
Q Consensus 81 ~~~~~h~~~~~~a 93 (362)
+......+.+...
T Consensus 75 vKa~~~~~~l~~l 87 (151)
T PF02558_consen 75 VKAYQLEQALQSL 87 (151)
T ss_dssp SSGGGHHHHHHHH
T ss_pred ecccchHHHHHHH
Confidence 9988777766553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.24 Score=42.46 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=28.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
..||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 21 ~s~VlIiG~gglG~evak~La~~-GVg~i~lvD~d~ 55 (197)
T cd01492 21 SARILLIGLKGLGAEIAKNLVLS-GIGSLTILDDRT 55 (197)
T ss_pred hCcEEEEcCCHHHHHHHHHHHHc-CCCEEEEEECCc
Confidence 56899999999999999999877 666666888753
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK06091 membrane protein FdrA; Validated | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.1 Score=51.31 Aligned_cols=67 Identities=9% Similarity=0.169 Sum_probs=56.8
Q ss_pred ccCCHHHHhcC-CCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 61 VYGSYEALLDD-KDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 61 ~~~~~~e~l~~-~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.++.+++++ +++|+++|++|...-.+.+++|+++|+++++--- ....+.-++|.+.|+++|+.++
T Consensus 104 ~~~t~~~a~~~lpe~DLAvIsVPa~~v~~al~ea~~~G~~viI~S~-gfg~~~E~~L~e~Ar~~Glrvm 171 (555)
T PRK06091 104 QVRRWDSACQKLPDANLALISVAGEYAAELAEQALDRNLNVMMFSD-NVTLEDEIRLKTRAREKGLLVM 171 (555)
T ss_pred ccccHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHcCCeEEEEcC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 57899998865 6789999999999999999999999999876322 3367788999999999998765
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.062 Score=49.52 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=45.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----CC--CCCccc-CCHHHHhcCCCCcEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----FP--PDAKVY-GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~~--~~~~~~-~~~~e~l~~~~~D~V~i~~~ 82 (362)
||+|||+|.+|...+..+...+-+.-+.++|.++++++..+.++. +. ..++++ .+++++ + +.|+|+|+.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~--~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-A--DADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-C--CCCEEEECCC
Confidence 699999999999887777655545445589998877665544431 11 122333 444443 3 4899999644
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.22 Score=44.71 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=61.7
Q ss_pred HHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.++.++++|++--+.+ ..+.+.+. +- +|++-|++..-.+.+++..+.+.||+|++.++.+.++++....++..++.
T Consensus 81 l~~~~~~~Gl~~~t~~~d~~~~~~l~-~~-~d~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~ 158 (260)
T TIGR01361 81 LRRAADEHGLPVVTEVMDPRDVEIVA-EY-ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGNTIEEWLYAAEYILSS 158 (260)
T ss_pred HHHHHHHhCCCEEEeeCChhhHHHHH-hh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 5667888998611111 23444444 33 99999999999999999999999999999999999999999998888775
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|.
T Consensus 159 Gn 160 (260)
T TIGR01361 159 GN 160 (260)
T ss_pred CC
Confidence 54
|
The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis. |
| >PRK06395 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.07 Score=51.77 Aligned_cols=89 Identities=13% Similarity=0.211 Sum_probs=56.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc-CCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVAS-RSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~ 83 (362)
+|||.|||.|......+..+++.+ .+|..+.. .++.. ..+++.+-. .-..|+++++ ...++|+|++....
T Consensus 2 ~~kVLvlG~G~re~al~~~l~~~g-~~v~~~~~~~Npg~-~~~a~~~~~----~~~~d~e~l~~~~~~~~id~Vi~~~d~ 75 (435)
T PRK06395 2 TMKVMLVGSGGREDAIARAIKRSG-AILFSVIGHENPSI-KKLSKKYLF----YDEKDYDLIEDFALKNNVDIVFVGPDP 75 (435)
T ss_pred ceEEEEECCcHHHHHHHHHHHhCC-CeEEEEECCCChhh-hhcccceee----cCCCCHHHHHHHHHHhCCCEEEECCCh
Confidence 489999999987777777788774 56665533 23332 122322210 1125666654 45789999987555
Q ss_pred cccHHHHHHHHHcCCeEEE
Q 018020 84 SMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~ 102 (362)
.....++....+.|.+|+.
T Consensus 76 ~l~~~~~~~l~~~Gi~v~g 94 (435)
T PRK06395 76 VLATPLVNNLLKRGIKVAS 94 (435)
T ss_pred HHHHHHHHHHHHCCCcEEC
Confidence 4555566666788988874
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.14 Score=50.31 Aligned_cols=88 Identities=16% Similarity=0.032 Sum_probs=57.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHH---HHHHcCCCCCCcccC-CHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATN---FAKANNFPPDAKVYG-SYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~---~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~ 82 (362)
.-+|.|||+|..|...+..|.+. +.+|+ ++|.+ .+.... ..++.|+. ++. +..+. ..++|+|++++-
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~~-G~~V~-~~d~~~~~~~~~~~~~l~~~gv~----~~~~~~~~~--~~~~D~Vv~s~G 87 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLEL-GARVT-VVDDGDDERHRALAAILEALGAT----VRLGPGPTL--PEDTDLVVTSPG 87 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCchhhhHHHHHHHHHcCCE----EEECCCccc--cCCCCEEEECCC
Confidence 35899999999999888888776 67766 56643 332222 22344653 321 11121 235899999887
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~E 103 (362)
-....+.+..|.++|.+|+-|
T Consensus 88 i~~~~~~~~~a~~~gi~v~~~ 108 (480)
T PRK01438 88 WRPDAPLLAAAADAGIPVWGE 108 (480)
T ss_pred cCCCCHHHHHHHHCCCeecch
Confidence 666667888888889888643
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.99 Score=42.90 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=57.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~e~l~---~~~~D~V~i~~ 81 (362)
=+|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +++++|.. .+.-+. ++.+.+. ...+|+|+-++
T Consensus 195 ~~VlV~G~G~vG~~~iqlak~~-G~~~vi~~~~~~~~~~-~a~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 271 (378)
T PLN02827 195 SSVVIFGLGTVGLSVAQGAKLR-GASQIIGVDINPEKAE-KAKTFGVT-DFINPNDLSEPIQQVIKRMTGGGADYSFECV 271 (378)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCHHHHH-HHHHcCCc-EEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence 4788999999999888888766 6654546777777655 55777753 111111 2333221 12699999999
Q ss_pred CCcccHHHHHHHHHcC
Q 018020 82 PTSMHVKWAISVAQKK 97 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g 97 (362)
........+..+++.|
T Consensus 272 G~~~~~~~~l~~l~~g 287 (378)
T PLN02827 272 GDTGIATTALQSCSDG 287 (378)
T ss_pred CChHHHHHHHHhhccC
Confidence 8877777788888776
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.035 Score=44.45 Aligned_cols=119 Identities=12% Similarity=0.227 Sum_probs=61.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC---CCcccCCHHHHhcC--CCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP---DAKVYGSYEALLDD--KDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~e~l~~--~~~D~V~i~~~ 82 (362)
..||+|+|+|..|...+..|... ++.-+.++|.+.-....+.+++-..+ +..-.+-+.+.|.. +.+++..+..+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECcCHHHHHHHHHHHHh-CCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 46899999999999999999877 55445578875432222211110000 00001112222322 33443333333
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
. ..+.....++ +-.+++. ...+.+.-..|.+.|+++++++..+..
T Consensus 81 ~--~~~~~~~~~~-~~d~vi~--~~d~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 81 I--DEENIEELLK-DYDIVID--CVDSLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp C--SHHHHHHHHH-TSSEEEE--ESSSHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred c--cccccccccc-CCCEEEE--ecCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 3 3344444443 4344443 244566666777788888887765543
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.1 Score=44.50 Aligned_cols=81 Identities=16% Similarity=0.177 Sum_probs=53.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCC-cccH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPT-SMHV 87 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~-~~h~ 87 (362)
++.|+|+|..|+..++.|++. ++++++.+|.++..... .-.|+| ++.+.+++... .+.+.++++++. ..+.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~-g~~vvgfid~~~~~~~~--~i~g~p----vlg~~~~l~~~~~~~~~~iiai~~~~~~~ 73 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS-GWEIVGFLDDNPALQGT--SVDGLP----VLGGDEDLLRYPPDEVDLVVAIGDNKLRR 73 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC-CCEEEEEEcCCccccCc--ccCCcc----EECCHHHHhhhcccccEEEEEcCCHHHHH
Confidence 478999999999999999875 89999999987543221 113443 56666665432 346778887754 3444
Q ss_pred HHHHHHHHcC
Q 018020 88 KWAISVAQKK 97 (362)
Q Consensus 88 ~~~~~al~~g 97 (362)
++...+.+.|
T Consensus 74 ~i~~~l~~~g 83 (201)
T TIGR03570 74 RLFEKLKAKG 83 (201)
T ss_pred HHHHHHHhCC
Confidence 4544444444
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.31 Score=46.96 Aligned_cols=115 Identities=8% Similarity=-0.005 Sum_probs=73.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc----------CCHHHHH---HHHHH-cC-CC-----CCCcccCCHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVAS----------RSLEKAT---NFAKA-NN-FP-----PDAKVYGSYE 66 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d----------~~~~~~~---~~~~~-~~-~~-----~~~~~~~~~~ 66 (362)
+-.||+|.|+|+.|...+..|.+. +++|++|+| .+.+.+. +..++ .+ +. .++ .+-+.+
T Consensus 227 ~g~rVaVQGfGNVG~~aA~~L~e~-GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga-~~i~~d 304 (444)
T PRK14031 227 KGKVCLVSGSGNVAQYTAEKVLEL-GGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGC-KYVEGA 304 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCC-EEcCCc
Confidence 457999999999999989988876 899999999 6665543 11111 11 00 011 123556
Q ss_pred HHhcCCCCcEEEE-cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 67 ALLDDKDIDAVYL-PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 67 e~l~~~~~D~V~i-~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
++++. ++|+.+= ++.+.-+.+-+.+....|.-+++|--=..+..++.+ ...++|+.+
T Consensus 305 ~~~~~-~cDIliPaAl~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~---~L~~rgI~~ 362 (444)
T PRK14031 305 RPWGE-KGDIALPSATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK---VFQDAKILY 362 (444)
T ss_pred ccccC-CCcEEeecccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH---HHHHCCcEE
Confidence 66654 6888885 455667777777776667778888643334444443 335556554
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.21 Score=45.48 Aligned_cols=101 Identities=14% Similarity=0.102 Sum_probs=63.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
.+++|+|+|..|.--.+..+.+ +.+++++ |++..+.++..+.+| .|..++++....--+
T Consensus 183 ~~vgI~GlGGLGh~aVq~AKAM-G~rV~vi-s~~~~kkeea~~~LG-------------------Ad~fv~~~~d~d~~~ 241 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHMAVQYAKAM-GMRVTVI-STSSKKKEEAIKSLG-------------------ADVFVDSTEDPDIMK 241 (360)
T ss_pred cEEEEecCcccchHHHHHHHHh-CcEEEEE-eCCchhHHHHHHhcC-------------------cceeEEecCCHHHHH
Confidence 6799999988777666666777 7887854 555444454445554 455555555555555
Q ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 018020 89 WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV 134 (362)
Q Consensus 89 ~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r 134 (362)
.+..+++-+.|-.+ ..+......++.+++..|..+++|.+.-
T Consensus 242 ~~~~~~dg~~~~v~----~~a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 242 AIMKTTDGGIDTVS----NLAEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred HHHHhhcCcceeee----eccccchHHHHHHhhcCCEEEEEeCcCC
Confidence 56666666655332 1122234556677788888888887664
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.11 Score=50.53 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=57.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH----HHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA----TNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~----~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
-+|.|+|.|.+|...+..|.+. +++|+ ++|++.... +.+ ++.|+. ++ .+..+++.. .+|+|+++.-
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~-G~~V~-~~d~~~~~~~~~~~~l-~~~g~~----~~~~~~~~~~~~~-~~d~vV~s~g 77 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKL-GANVT-VNDGKPFSENPEAQEL-LEEGIK----VICGSHPLELLDE-DFDLMVKNPG 77 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-CCEEE-EEcCCCccchhHHHHH-HhcCCE----EEeCCCCHHHhcC-cCCEEEECCC
Confidence 4689999999999888888877 67766 567654221 222 233542 32 334444432 4898877654
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~E 103 (362)
-....+.+.+|.+.|.+|+.+
T Consensus 78 i~~~~~~~~~a~~~~i~v~~~ 98 (447)
T PRK02472 78 IPYTNPMVEKALEKGIPIITE 98 (447)
T ss_pred CCCCCHHHHHHHHCCCcEEeH
Confidence 444557888889999998854
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.75 E-value=1 Score=42.62 Aligned_cols=89 Identities=10% Similarity=0.095 Sum_probs=58.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CH-HHHhc--CCCCcEEEEcCCCc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SY-EALLD--DKDIDAVYLPLPTS 84 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~-~e~l~--~~~~D~V~i~~~~~ 84 (362)
+|.|+|+|.+|...+..++.. +++.+.+.++++++.+ +++++|.. .+.-+. ++ +++.+ ...+|+|+-++...
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~-~a~~~Ga~-~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~ 270 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLA-LARELGAT-ATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV 270 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHH-HHHHcCCc-eEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 689999999998888877766 6643335677877665 55777753 111111 22 22221 12689999999877
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
.....+.++++.|-.++
T Consensus 271 ~~~~~~~~~l~~~G~iv 287 (371)
T cd08281 271 PALETAYEITRRGGTTV 287 (371)
T ss_pred HHHHHHHHHHhcCCEEE
Confidence 77778888887774443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.063 Score=46.01 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=40.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|||. |.||+.+...+++. ++.+. + .+.|+|++|+|...-.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~-g~~v~--------------------------------~--~~~DlVilavPv~~~~ 45 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY--------------------------------I--KKADHAFLSVPIDAAL 45 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC-CCEEE--------------------------------E--CCCCEEEEeCCHHHHH
Confidence 58999998 99999999999877 66643 1 2589999999998777
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
+++.+.
T Consensus 46 ~~i~~~ 51 (197)
T PRK06444 46 NYIESY 51 (197)
T ss_pred HHHHHh
Confidence 777654
|
|
| >TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.078 Score=51.83 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=54.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-|+.|||+|..|...+..+++.+ +++++|++|.++..... .-.|+| ++ +++.+.+...++|.|+|+.|..
T Consensus 126 rrvlIiGag~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~--~i~g~p----Vlg~~~l~~~i~~~~id~ViIAip~~ 199 (456)
T TIGR03022 126 RPAVIIGAGQNAAILYRALQSNPQLGLRPLAVVDTDPAASGR--LLTGLP----VVGADDALRLYARTRYAYVIVAMPGT 199 (456)
T ss_pred ceEEEEeCCHHHHHHHHHHhhCccCCcEEEEEEeCCcccccc--ccCCCc----ccChhHHHHHHHhCCCCEEEEecCCc
Confidence 47999999999998899887655 58999999976432211 112332 44 3455556667899999998854
Q ss_pred cc---HHHHHHHHHcCC
Q 018020 85 MH---VKWAISVAQKKK 98 (362)
Q Consensus 85 ~h---~~~~~~al~~gk 98 (362)
.. .+++..+-+.|.
T Consensus 200 ~~~~~~~ll~~l~~~~v 216 (456)
T TIGR03022 200 QAEDMARLVRKLGALHF 216 (456)
T ss_pred cHHHHHHHHHHHHhCCC
Confidence 32 333444444444
|
This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred. |
| >COG0364 Zwf Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.12 Score=49.51 Aligned_cols=189 Identities=20% Similarity=0.222 Sum_probs=107.0
Q ss_pred ceeEEEEEec-cHHHH-HHHHHHhc-------CCCcEEEEEEcCC--HH---------------------HHHHHHHHcC
Q 018020 7 AAIRFGIIGA-ADIAR-KLSRAITL-------APNAVLSAVASRS--LE---------------------KATNFAKANN 54 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~-~~~~~~~~-------~~~~~vv~v~d~~--~~---------------------~~~~~~~~~~ 54 (362)
.+..+.|.|+ |-.++ ...|+|-+ .+.+.|+|+.-+. .+ ..+.|++.+-
T Consensus 6 ~~~~lvIFGatGDLA~RKL~PALy~L~~~g~l~~~~~IiG~aR~~~s~e~f~~~~~~~i~~~~~~~~~~~~~~~F~~~~~ 85 (483)
T COG0364 6 EPFDLVIFGATGDLARRKLFPALYRLYKEGLLPEDFRIIGVARSKWSNEEFRALVREAIEFAKTEEIDEAVWEEFASRLS 85 (483)
T ss_pred CcceEEEEcccchhhhhhHHHHHHHHHHcCCCCCCceEEEEecCcCChHHHHHHHHHHhhhcccccccHHHHHHHHhceE
Confidence 4677888886 66666 35666522 2357889877431 11 1233333321
Q ss_pred C-C---CCCcccCCHHHHhcCCC-CcEEEEcCCCcccHHHHHHHHHcC-----CeEEEeCCCCCCHHHHHHHHHHHHHc-
Q 018020 55 F-P---PDAKVYGSYEALLDDKD-IDAVYLPLPTSMHVKWAISVAQKK-----KHLLMEKPMALNVAEFDVILNACEEN- 123 (362)
Q Consensus 55 ~-~---~~~~~~~~~~e~l~~~~-~D~V~i~~~~~~h~~~~~~al~~g-----k~V~~EKP~~~~~~~~~~l~~~a~~~- 123 (362)
- + .+..-|..+.++|...+ .-+.++++||+.-..++...-++| .-|++|||++.|++.|++|.+...+.
T Consensus 86 Y~~~d~~~~~~~~~L~~~l~~~~~~~vfYLa~pP~~f~~i~~~L~~~~l~~~~~RlviEKPfG~dL~SA~~Ln~~i~~~F 165 (483)
T COG0364 86 YVSGDYDDPESFDELKDLLGELEGNRVFYLAVPPSLFGTIAENLAKAGLNEGNGRLVIEKPFGHDLASARELNDQISAVF 165 (483)
T ss_pred EEecCCCCHHHHHHHHHHHhcccCceEEEEecChHHHHHHHHHHHHccCCCCCceEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 0 0 11233444555565422 458889999999888888777776 26899999999999999999977653
Q ss_pred --CCEEEEeee-----------cccChhHHHHHHhhcCCCCccceEEEEEEeee----cCCcccccCccCcCCCCCCCcc
Q 018020 124 --GVQLMDGTM-----------WVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF----AGDAEFLKNDIRVKPDLDGLGA 186 (362)
Q Consensus 124 --~~~~~v~~~-----------~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~----~~~~~~~~~~w~~~~~~~ggg~ 186 (362)
.-.+-+.+- .||. ..+-+-+ =+. --|-+|++...= -.+..|+ +..|+
T Consensus 166 ~E~qIyRIDHYLGKetVQNllalRFa---N~~fE~l-WNr--~~Id~VqIt~aE~~GvEgRggYY----------D~~Ga 229 (483)
T COG0364 166 KEEQIYRIDHYLGKETVQNLLALRFA---NAIFEPL-WNR--NYIDHVQITVAETLGVEGRGGYY----------DKAGA 229 (483)
T ss_pred ChhheEeeccccCHHHHHHHHHHHHh---hhhhhhh-hcc--ccceeEEEEEeeeccccccccch----------hccch
Confidence 223333321 2221 1112222 111 135555555442 1122222 23488
Q ss_pred cccc-cchHHHHHHHHccCCCCcEEEE
Q 018020 187 LGDA-GWYGIRSILWANDYELPKTVIA 212 (362)
Q Consensus 187 l~~~-g~h~id~~~~l~g~~~~~~V~a 212 (362)
|.|+ =-|.+-++..+.- ++|.+..+
T Consensus 230 lRDMvQNHlLQlL~LvAM-E~P~~~~a 255 (483)
T COG0364 230 LRDMVQNHLLQLLCLVAM-EPPASFSA 255 (483)
T ss_pred HHHHHHHHHHHHHHHHhc-CCCCCCCH
Confidence 8886 4677777766653 46766555
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.17 Score=53.33 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=57.8
Q ss_pred eeEEEEEeccHHHHHH-HHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCccc-CCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVY-GSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~-~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|.+||.|..|..- ++.|.+. +++|. +.|.++ ...+.+ ++.|+. ++ ....+.+. ++|+|+++..-.
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~-G~~V~-~sD~~~~~~~~~L-~~~gi~----~~~g~~~~~~~--~~d~vV~SpgI~ 74 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDR-GYSVS-GSDLSEGKTVEKL-KAKGAR----FFLGHQEEHVP--EDAVVVYSSSIS 74 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHC-CCeEE-EECCCCChHHHHH-HHCCCE----EeCCCCHHHcC--CCCEEEECCCcC
Confidence 4469999999999876 7777776 78866 577543 223333 344653 32 22334454 489988766555
Q ss_pred ccHHHHHHHHHcCCeEEEe
Q 018020 85 MHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~E 103 (362)
...+.+..|.++|.+|+.|
T Consensus 75 ~~~p~~~~a~~~gi~v~~~ 93 (809)
T PRK14573 75 KDNVEYLSAKSRGNRLVHR 93 (809)
T ss_pred CCCHHHHHHHHCCCcEEeH
Confidence 5556677788999999865
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.47 Score=42.23 Aligned_cols=108 Identities=10% Similarity=-0.008 Sum_probs=65.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC--cccCCHHHHhcC-CCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA--KVYGSYEALLDD-KDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~-~~~D~V~i~~~~~ 84 (362)
+.|+.|+|+|+.+...++.++.+ +++++ |+|..++.. ..... +++ ....++++.+.. ..-++|+|.|..+
T Consensus 100 ~~~L~IfGaG~va~~la~la~~l-Gf~V~-v~D~R~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~t~vvi~th~h 172 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPL-PCRVT-WVDSREAEF----PEDLP-DGVATLVTDEPEAEVAEAPPGSYFLVLTHDH 172 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcC-CCEEE-EEeCCcccc----cccCC-CCceEEecCCHHHHHhcCCCCcEEEEEeCCh
Confidence 57999999999999999999888 79977 667655522 11111 111 233456666653 3568999999888
Q ss_pred ccHHHHHH-HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 85 MHVKWAIS-VAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 85 ~h~~~~~~-al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.+-..+.. +|+....-|+- +--|..-..++.+..++.|
T Consensus 173 ~~D~~~L~~aL~~~~~~YIG--~lGSr~k~~~~~~~L~~~G 211 (246)
T TIGR02964 173 ALDLELCHAALRRGDFAYFG--LIGSKTKRARFEHRLRARG 211 (246)
T ss_pred HHHHHHHHHHHhCCCCcEEE--EeCCHHHHHHHHHHHHhcC
Confidence 87655554 44333332332 1224444444555445444
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.16 Score=49.55 Aligned_cols=88 Identities=7% Similarity=0.061 Sum_probs=55.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-||+|+|+|..|...++.|+ . +.+++ +.|..++....+.+..+.. .......+.++ ++|+|+++.--....
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~-g~~v~-v~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~d~vV~SPgI~~~~ 77 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-N-KYDVI-VYDDLKANRDIFEELYSKN---AIAALSDSRWQ--NLDKIVLSPGIPLTH 77 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-C-CCEEE-EECCCCCchHHHHhhhcCc---eeccCChhHhh--CCCEEEECCCCCCCC
Confidence 357999999999999888888 4 78765 6775433222221110111 11122234444 489887765445566
Q ss_pred HHHHHHHHcCCeEEEe
Q 018020 88 KWAISVAQKKKHLLME 103 (362)
Q Consensus 88 ~~~~~al~~gk~V~~E 103 (362)
+.+..|.++|.+|+.|
T Consensus 78 p~~~~a~~~gi~v~~e 93 (454)
T PRK01368 78 EIVKIAKNFNIPITSD 93 (454)
T ss_pred HHHHHHHHCCCceecH
Confidence 7788888999998864
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.17 Score=48.88 Aligned_cols=86 Identities=12% Similarity=0.040 Sum_probs=57.0
Q ss_pred eEEEEEeccHH-HHHHHHHHhcC----CCcEEEEEEcCCHHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADI-ARKLSRAITLA----PNAVLSAVASRSLEKATN-------FAKANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~-g~~~~~~~~~~----~~~~vv~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
|||.|||+|+. ....+..+.+. +..+ +..+|.+++|.+. +.++.|.+-.+..++|.++.|.+ .|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~e-i~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g--ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISE-VTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID--ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCE-EEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CCE
Confidence 68999999984 22445555433 3455 4489999987653 44555644446678999999997 999
Q ss_pred EEEcCCCcccHHH---HHHHHHcC
Q 018020 77 VYLPLPTSMHVKW---AISVAQKK 97 (362)
Q Consensus 77 V~i~~~~~~h~~~---~~~al~~g 97 (362)
|+......-+... .+-.++.|
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G 101 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYG 101 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcC
Confidence 9987766543222 22355665
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PLN02285 methionyl-tRNA formyltransferase | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.097 Score=48.83 Aligned_cols=76 Identities=18% Similarity=0.288 Sum_probs=52.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC-----CCcEEEEEEcCCHH-----------HHHHHHHHcCCCCCCccc--C----
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA-----PNAVLSAVASRSLE-----------KATNFAKANNFPPDAKVY--G---- 63 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~-----~~~~vv~v~d~~~~-----------~~~~~~~~~~~~~~~~~~--~---- 63 (362)
..+|||.++|++.++...+..|.+. .+++|++|+...+. -.+..|.+.|+|... ++ .
T Consensus 4 ~~~~kI~f~Gt~~fa~~~L~~L~~~~~~~~~~~~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~-v~~~~~~~~ 82 (334)
T PLN02285 4 GRKKRLVFLGTPEVAATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDL-IFTPEKAGE 82 (334)
T ss_pred CCccEEEEEECCHHHHHHHHHHHhhhhccCCCCeEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcce-ecCccccCC
Confidence 3589999999999999888887653 36899998765432 157788999997210 11 1
Q ss_pred -CHHHHhcCCCCcEEEEcCC
Q 018020 64 -SYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 64 -~~~e~l~~~~~D~V~i~~~ 82 (362)
...+.|.+.++|+++++.-
T Consensus 83 ~~~~~~l~~~~~Dliv~~~~ 102 (334)
T PLN02285 83 EDFLSALRELQPDLCITAAY 102 (334)
T ss_pred HHHHHHHHhhCCCEEEhhHh
Confidence 1223455668999998743
|
|
| >PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.29 Score=45.47 Aligned_cols=98 Identities=14% Similarity=0.083 Sum_probs=64.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHH---HcCCC-C-CCc---------------cc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAK---ANNFP-P-DAK---------------VY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~---~~~~~-~-~~~---------------~~--~ 63 (362)
++||||-|+|.||+..++.+...+++++|+|-|+ +.+....+-+ -+|.- + .+. ++ .
T Consensus 2 ~~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~~~ 81 (342)
T PTZ00353 2 PITVGINGFGPVGKAVLFASLTDPLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSAKH 81 (342)
T ss_pred CeEEEEECCChHHHHHHHHHHhcCCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEecC
Confidence 3799999999999998888665678999999984 5555544422 12211 1 111 00 1
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
+++++ ..+.++|+|+-||......+-+..-+++| |-|++=-|
T Consensus 82 dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisap 125 (342)
T PTZ00353 82 DLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQ 125 (342)
T ss_pred CcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCC
Confidence 12222 12237999999999998777777888876 66666545
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.14 Score=50.23 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=55.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH----HHHHHHHHcCCCCCCcccC-CHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE----KATNFAKANNFPPDAKVYG-SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~----~~~~~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~~ 83 (362)
-||+|+|+|.-|...++.|.+. +.+++ +.|.+.. ...++.+ .+. ..+. ...+.+. ++|+|+++.--
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~-g~~v~-~~d~~~~~~~~~~~~l~~-~~~----~~~~~~~~~~~~--~~d~vV~SpgI 79 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAH-LPAQA-LTLFCNAVEAREVGALAD-AAL----LVETEASAQRLA--AFDVVVKSPGI 79 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHc-CCEEE-EEcCCCcccchHHHHHhh-cCE----EEeCCCChHHcc--CCCEEEECCCC
Confidence 4899999999999999999877 67765 5664321 1122322 221 1222 2234454 58998876555
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~E 103 (362)
+...+.+.+|.+.|++|+.|
T Consensus 80 ~~~~p~~~~a~~~~i~i~~~ 99 (468)
T PRK04690 80 SPYRPEALAAAARGTPFIGG 99 (468)
T ss_pred CCCCHHHHHHHHcCCcEEEH
Confidence 55667788889999999864
|
|
| >PRK13789 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.084 Score=51.09 Aligned_cols=91 Identities=8% Similarity=-0.073 Sum_probs=57.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~ 83 (362)
++|||.|||.|..-...+..+++.|....+.++-.|.-... .+.....+ .-+.|.++++ ...++|+|++....
T Consensus 3 ~~~kvLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~~~-~~~~~~~~---~~~~d~~~l~~~a~~~~iD~Vv~g~E~ 78 (426)
T PRK13789 3 VKLKVLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGFPD-DELLPADS---FSILDKSSVQSFLKSNPFDLIVVGPED 78 (426)
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHHhc-cccccccC---cCcCCHHHHHHHHHHcCCCEEEECCch
Confidence 36999999999877677778888877666666655542221 11111111 1246777664 45679999976555
Q ss_pred cccHHHHHHHHHcCCeEE
Q 018020 84 SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~ 101 (362)
..-..++..+-+.|.+++
T Consensus 79 ~l~~glad~~~~~Gip~~ 96 (426)
T PRK13789 79 PLVAGFADWAAELGIPCF 96 (426)
T ss_pred HHHHHHHHHHHHcCCCcC
Confidence 555566667777787654
|
|
| >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.14 Score=47.45 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=63.6
Q ss_pred EEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcC-CHHHHHHHHH-H--cC-CCCCCcccC------------------C
Q 018020 10 RFGIIGAADIARKLSRAITLA--PNAVLSAVASR-SLEKATNFAK-A--NN-FPPDAKVYG------------------S 64 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~-~~~~~~~~~~-~--~~-~~~~~~~~~------------------~ 64 (362)
||||-|+|.||+..++.+... +++++++|-|. +.+.+..+-+ + +| ++..+.+.+ +
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~d 80 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASERD 80 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecCC
Confidence 699999999999888886655 47999999986 3333333311 0 12 111111111 2
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++++ ..+.++|+|+-||......+.+..++++| |-|.+--|
T Consensus 81 p~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap 123 (327)
T TIGR01534 81 PSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP 123 (327)
T ss_pred cccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC
Confidence 2222 22237999999999999999999999999 66666545
|
The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.17 Score=49.17 Aligned_cols=87 Identities=11% Similarity=0.059 Sum_probs=55.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-HHH---HHHH-HcCCCCCCcccC-CHHHHhcCCCCcEEEEcCCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-KAT---NFAK-ANNFPPDAKVYG-SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~~~---~~~~-~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~~ 83 (362)
||.+||.|..|...++.|++. +.+|. ++|.... ... ...+ ..|+. ++. .-.+.++ +.|+|+++.--
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~-G~~V~-~sD~~~~~~~~~~~~~~~~~~gi~----~~~g~~~~~~~--~~d~vv~sp~i 72 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK-GAEVT-VTDLKPNEELEPSMGQLRLNEGSV----LHTGLHLEDLN--NADLVVKSPGI 72 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC-CCEEE-EEeCCCCccchhHHHHHhhccCcE----EEecCchHHhc--cCCEEEECCCC
Confidence 589999999999888888877 77766 5775432 111 1112 23543 332 1134444 48988776544
Q ss_pred cccHHHHHHHHHcCCeEEEeC
Q 018020 84 SMHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EK 104 (362)
+...+.+.+|.++|++|+.|-
T Consensus 73 ~~~~p~~~~a~~~~i~i~~~~ 93 (433)
T TIGR01087 73 PPDHPLVQAAAKRGIPVVGDI 93 (433)
T ss_pred CCCCHHHHHHHHCCCcEEEHH
Confidence 444567778889999988653
|
|
| >PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.1 Score=48.21 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=51.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-----------HHHHHHHHHHcCCCCCCcccCC-----HHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-----------LEKATNFAKANNFPPDAKVYGS-----YEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~~ 72 (362)
|||+++|.+.++...+..|.+. +.++++|+... ....+.+|++.|+| +....+ +.+.+...
T Consensus 1 mkIvf~G~~~~a~~~L~~L~~~-~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip--~~~~~~~~~~~~~~~l~~~ 77 (309)
T PRK00005 1 MRIVFMGTPEFAVPSLKALLES-GHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIP--VLQPEKLRDPEFLAELAAL 77 (309)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCC--EECcCCCCCHHHHHHHHhc
Confidence 6899999999999999998765 78899988532 12467889999987 111122 23445567
Q ss_pred CCcEEEEcCCC
Q 018020 73 DIDAVYLPLPT 83 (362)
Q Consensus 73 ~~D~V~i~~~~ 83 (362)
++|+++++.-.
T Consensus 78 ~~Dliv~~~~~ 88 (309)
T PRK00005 78 NADVIVVVAYG 88 (309)
T ss_pred CcCEEEEehhh
Confidence 89999987543
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.6 Score=41.08 Aligned_cols=89 Identities=15% Similarity=0.036 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHH-HH---hcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYE-AL---LDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~-e~---l~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. +++.+.+.++++++.+. ++++|.. .++ .++. ++ .....+|+|+-+
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~-G~~~Vi~~~~~~~~~~~-~~~~Ga~---~~i~~~~~~~~~~i~~~~~~~g~d~vid~ 252 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALA-GASKIIAVDIDDRKLEW-AREFGAT---HTVNSSGTDPVEAIRALTGGFGADVVIDA 252 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEcCCHHHHHH-HHHcCCc---eEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence 4789999999999888888766 66533456777776554 4677752 121 1222 22 222469999999
Q ss_pred CCCcccHHHHHHHHHcCCe-EEE
Q 018020 81 LPTSMHVKWAISVAQKKKH-LLM 102 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~-V~~ 102 (362)
+........+..+++.|-. |++
T Consensus 253 ~g~~~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 253 VGRPETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred CCCHHHHHHHHHHhccCCEEEEE
Confidence 9876666677778876644 444
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.21 Score=48.29 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=57.8
Q ss_pred eEEEEEeccHH-HHHHHHHHhc----CCCcEEEEEEcCCHHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGAADI-ARKLSRAITL----APNAVLSAVASRSLEKATN-------FAKANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~G~~-g~~~~~~~~~----~~~~~vv~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
|||+|||+|+. +...+..+.. .+..+ +.++|.+++|.+. ..++.|.+-.+..++|.+|.|.. .|+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~e-i~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g--ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRE-LVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD--ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCE-EEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC--CCE
Confidence 68999999984 2234444433 33455 4499999987654 33445544446678999999996 999
Q ss_pred EEEcCCCcccH---HHHHHHHHcCC
Q 018020 77 VYLPLPTSMHV---KWAISVAQKKK 98 (362)
Q Consensus 77 V~i~~~~~~h~---~~~~~al~~gk 98 (362)
|+.......+. .-..-.++.|.
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi 102 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGV 102 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCc
Confidence 99877665432 22334778884
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.31 Score=42.50 Aligned_cols=89 Identities=12% Similarity=0.153 Sum_probs=54.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~~~~ 85 (362)
+..+|.|||.|..|..-+..|.+. +++|+.|...-.+..+.+++...+. ..-.++++ -++ +.++|+.+|.+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~i~~el~~l~~~~~i~---~~~r~~~~~dl~--g~~LViaATdD~~ 97 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKKFSKEFLDLKKYGNLK---LIKGNYDKEFIK--DKHLIVIATDDEK 97 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCCCHHHHHHHhCCCEE---EEeCCCChHHhC--CCcEEEECCCCHH
Confidence 356899999999999888888776 6776655433223355555543332 11122222 233 5899999999865
Q ss_pred cHH-HHHHHHHcCCeEE
Q 018020 86 HVK-WAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~-~~~~al~~gk~V~ 101 (362)
--. +...|-++|+.|.
T Consensus 98 vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 98 LNNKIRKHCDRLYKLYI 114 (223)
T ss_pred HHHHHHHHHHHcCCeEE
Confidence 444 4444445576555
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.28 Score=43.53 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=67.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+..||.|||+|..|...+..|... ++.-+.++|.+.-....+.++ .|.+ ++ ....+.|..-.+++-+.
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~---Ka-~~a~~~l~~inp~v~i~ 97 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAA-GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQP---KV-ESAKDALTQINPHIAIN 97 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCcccccCcccceeeeHhhCCCc---HH-HHHHHHHHHHCCCcEEE
Confidence 356899999999999999999877 555566788765433333222 1221 11 11222332222333333
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+.+...-.+-+.+.+ .+-.++++ ...+.+.-..|.+.|.++++++..+....+
T Consensus 98 ~~~~~i~~~~~~~~~-~~~DlVvd--~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 98 PINAKLDDAELAALI-AEHDIVVD--CTDNVEVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred EEeccCCHHHHHHHh-hcCCEEEE--cCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 222222222233333 34456665 345666666677889999998887655443
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.28 Score=47.98 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=54.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC-CcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP-TSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~-~~~h~ 87 (362)
.||.+||+|..|...+..|++. +++|. ++|........+ .+.|+. ....-.+-+. ++|+|+++.- +..|.
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~-G~~v~-~~D~~~~~~~~l-~~~g~~----~~~~~~~~~~--~~d~vv~sp~i~~~~~ 80 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAG-GAEVI-AWDDNPASRAKA-AAAGIT----TADLRTADWS--GFAALVLSPGVPLTHP 80 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHC-CCEEE-EECCChhhHHHH-HhcCcc----ccCCChhHHc--CCCEEEECCCCCccCC
Confidence 4799999999998878888877 67755 688765433333 344553 2221112233 5898776432 22332
Q ss_pred ---HHHHHHHHcCCeEEEe
Q 018020 88 ---KWAISVAQKKKHLLME 103 (362)
Q Consensus 88 ---~~~~~al~~gk~V~~E 103 (362)
..+..+.++|++|+.+
T Consensus 81 ~~~~~v~~a~~~gi~i~~~ 99 (460)
T PRK01390 81 KPHWVVDLARAAGVEVIGD 99 (460)
T ss_pred cccHHHHHHHHcCCcEEeH
Confidence 4788888999888863
|
|
| >PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.079 Score=44.85 Aligned_cols=48 Identities=19% Similarity=0.339 Sum_probs=36.2
Q ss_pred cEEEEcCCCcccHHHHHHHHHcC--------CeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKK--------KHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~g--------k~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
=+.++++||..=..++...-++| .-|++|||++.|++.|++|-+...+
T Consensus 107 rifYLAvPP~~f~~i~~~L~~~~l~~~~~g~~RiVvEKPFG~Dl~SA~~Ln~~l~~ 162 (183)
T PF00479_consen 107 RIFYLAVPPSLFGPIARNLSEAGLNEEPNGWSRIVVEKPFGRDLESARELNDQLAE 162 (183)
T ss_dssp EEEEE-S-GGGHHHHHHHHHHHT-S-TSSS-EEEEESSTSTSSHHHHHHHHHHHCT
T ss_pred eEEEeccCHHHHHHHHHHHHHHhcccccCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 37779999987777666555554 2699999999999999999987654
|
1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A .... |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.96 Score=42.36 Aligned_cols=101 Identities=10% Similarity=0.096 Sum_probs=60.4
Q ss_pred eEEEEEeccHH--------------------HHHHHHHHhcCCCcEEEEEEcCCHHHH-----HHHHHHcCCCCCCcccC
Q 018020 9 IRFGIIGAADI--------------------ARKLSRAITLAPNAVLSAVASRSLEKA-----TNFAKANNFPPDAKVYG 63 (362)
Q Consensus 9 ~~v~iiG~G~~--------------------g~~~~~~~~~~~~~~vv~v~d~~~~~~-----~~~~~~~~~~~~~~~~~ 63 (362)
|||.+.|+|+- |..++..|.+. +.+|+ ++|+++++. +.+ .+.|+ .+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a-G~~V~-v~Dr~~~~l~~~~~~~l-~~~Gi----~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA-GHDVV-LAEPNRSILSEELWKKV-EDAGV----KVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC-CCeEE-EEECCHHHhhHHHHHHH-HHCCC----EEeC
Confidence 57888888851 33455556554 56655 789988732 332 34453 5678
Q ss_pred CHHHHhcCCCCcEEEEcCCCccc-HHHHHHHH---HcCCeEEEeCCCCCCHHHH-HHHHHHH
Q 018020 64 SYEALLDDKDIDAVYLPLPTSMH-VKWAISVA---QKKKHLLMEKPMALNVAEF-DVILNAC 120 (362)
Q Consensus 64 ~~~e~l~~~~~D~V~i~~~~~~h-~~~~~~al---~~gk~V~~EKP~~~~~~~~-~~l~~~a 120 (362)
|..+++++ .|+|++++|+..+ .+++...+ ..| .++++.. +.+.... +.+.+..
T Consensus 74 d~~eaa~~--ADvVIlaVP~~~~v~~Vl~~L~~~L~~g-~IVId~S-T~~~~~~s~~l~~~l 131 (342)
T PRK12557 74 DDAEAAKH--GEIHILFTPFGKKTVEIAKNILPHLPEN-AVICNTC-TVSPVVLYYSLEGEL 131 (342)
T ss_pred CHHHHHhC--CCEEEEECCCcHHHHHHHHHHHhhCCCC-CEEEEec-CCCHHHHHHHHHHHh
Confidence 88888864 8999999998874 33433322 233 4666644 3345544 4444443
|
|
| >PRK06988 putative formyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.14 Score=47.29 Aligned_cols=72 Identities=8% Similarity=0.077 Sum_probs=50.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC--------HHHHHHHHHHcCCCCCCcccCC-----HHHHhcCCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS--------LEKATNFAKANNFPPDAKVYGS-----YEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~--------~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~~~~ 74 (362)
+|||+++|.+.+|...+..|.+. +.++++|+... ....+++|.++|+|- ....+ ..+.|...++
T Consensus 2 ~mkIvf~Gs~~~a~~~L~~L~~~-~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~--~~~~~~~~~~~~~~l~~~~~ 78 (312)
T PRK06988 2 KPRAVVFAYHNVGVRCLQVLLAR-GVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPV--ITPADPNDPELRAAVAAAAP 78 (312)
T ss_pred CcEEEEEeCcHHHHHHHHHHHhC-CCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcE--EccccCCCHHHHHHHHhcCC
Confidence 37999999999999888888765 68888887542 124678899999871 11122 2344566789
Q ss_pred cEEEEcCC
Q 018020 75 DAVYLPLP 82 (362)
Q Consensus 75 D~V~i~~~ 82 (362)
|+++++.-
T Consensus 79 Dliv~~~~ 86 (312)
T PRK06988 79 DFIFSFYY 86 (312)
T ss_pred CEEEEehh
Confidence 99987653
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.2 Score=41.26 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=68.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+.-||.|||.|.+|...+..|.+. +.+|+- +++. ..+.+.+.-.+. .....+++- .-.+.|+|+.+|.+..-
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~-ga~V~V-Isp~--~~~~l~~l~~i~---~~~~~~~~~-dl~~a~lViaaT~d~e~ 83 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT-GAFVTV-VSPE--ICKEMKELPYIT---WKQKTFSND-DIKDAHLIYAATNQHAV 83 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEE-EcCc--cCHHHHhccCcE---EEecccChh-cCCCceEEEECCCCHHH
Confidence 346899999999999999988776 677663 4443 333333311111 111222221 11358999999998876
Q ss_pred HHHHHHHHHcCCeEE-EeCCCCCCHHHHHH-HHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 87 VKWAISVAQKKKHLL-MEKPMALNVAEFDV-ILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 87 ~~~~~~al~~gk~V~-~EKP~~~~~~~~~~-l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
-..+..+.+++..|- ++.|- .+.- +-...+..++.+.+..+-.-.-..+++|+.|
T Consensus 84 N~~i~~~a~~~~~vn~~d~~~-----~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~i 140 (157)
T PRK06719 84 NMMVKQAAHDFQWVNVVSDGT-----ESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQEL 140 (157)
T ss_pred HHHHHHHHHHCCcEEECCCCC-----cCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHH
Confidence 666665555554322 22231 1111 1112233455666655554333445666666
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.43 Score=42.07 Aligned_cols=121 Identities=11% Similarity=0.079 Sum_probs=64.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCC---cccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDA---KVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~---~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-||+|||+|..|...+..|... ++.-+.++|.+.-....+-+++-.. .++ +-.....+-+..-++|+-+.+.+.
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~ 105 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAA-GVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVG 105 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 46899999999999999999877 5555557787654444443332100 000 000111122222234544443222
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
....+-+...+ .+.+++++ ...+.+.-..+.+.|+++++++..+..
T Consensus 106 ~~~~~~~~~~l-~~~D~Vid--~~d~~~~r~~l~~~~~~~~ip~i~g~~ 151 (231)
T PRK08328 106 RLSEENIDEVL-KGVDVIVD--CLDNFETRYLLDDYAHKKGIPLVHGAV 151 (231)
T ss_pred cCCHHHHHHHH-hcCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEee
Confidence 22222233333 35566664 344555545556678888888775543
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.13 E-value=2.9 Score=39.12 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=58.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-----CHHHHhc----CCCCc----
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-----SYEALLD----DKDID---- 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~l~----~~~~D---- 75 (362)
-+|.|+|+|.+|...+..++.. +.+++ +.++++++.+ +++++|... +..+. ++.+.+. ...+|
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~-G~~vi-~~~~~~~~~~-~~~~~Ga~~-~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d 243 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAM-GAAVV-AIDIDPEKLE-MMKGFGADL-TLNPKDKSAREVKKLIKAFAKARGLRSTGW 243 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEE-EEcCCHHHHH-HHHHhCCce-EecCccccHHHHHHHHHhhcccCCCCCCcC
Confidence 3789999999999888888877 56765 4677777766 446777531 00111 1222221 12344
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCe-EEEe
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~-V~~E 103 (362)
+|+.++........+..+++.|-. +++-
T Consensus 244 ~v~d~~g~~~~~~~~~~~l~~~G~iv~~G 272 (349)
T TIGR03201 244 KIFECSGSKPGQESALSLLSHGGTLVVVG 272 (349)
T ss_pred EEEECCCChHHHHHHHHHHhcCCeEEEEC
Confidence 888899887777778888877744 4443
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.23 Score=47.82 Aligned_cols=73 Identities=16% Similarity=0.243 Sum_probs=49.0
Q ss_pred eEEEEEeccHH-HHHHHHHHhc----CCCcEEEEEEcCC-HHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCCc
Q 018020 9 IRFGIIGAADI-ARKLSRAITL----APNAVLSAVASRS-LEKATN-------FAKANNFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~-g~~~~~~~~~----~~~~~vv~v~d~~-~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~D 75 (362)
|||.|||+|+. ....+..+.. .+.-+ +..+|++ +++.+. ..++.+.+..+..++|.++.|.+ .|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~e-i~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g--ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTE-LVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG--AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCE-EEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC--CC
Confidence 68999999985 2234444433 23344 5589999 777543 34445544445668999999997 89
Q ss_pred EEEEcCCCc
Q 018020 76 AVYLPLPTS 84 (362)
Q Consensus 76 ~V~i~~~~~ 84 (362)
+|+++....
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999876544
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.67 Score=41.97 Aligned_cols=88 Identities=13% Similarity=0.053 Sum_probs=54.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-H---hcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-L---LDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~---l~~~~~D~V~i~~~~~~ 85 (362)
+|.|+|+|.+|...+..++.. +++.+.++++++++.+ +++++|... +..+.+..+ + .....+|+|+-++....
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~-~a~~~Ga~~-~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~ 199 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRE-LALSFGATA-LAEPEVLAERQGGLQNGRGVDVALEFSGATA 199 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHH-HHHHcCCcE-ecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence 689999999999888888776 6663334588877654 567777531 001122212 2 22235788888877665
Q ss_pred cHHHHHHHHHcCCeE
Q 018020 86 HVKWAISVAQKKKHL 100 (362)
Q Consensus 86 h~~~~~~al~~gk~V 100 (362)
-.+.+..+++.|-.+
T Consensus 200 ~~~~~~~~l~~~G~i 214 (280)
T TIGR03366 200 AVRACLESLDVGGTA 214 (280)
T ss_pred HHHHHHHHhcCCCEE
Confidence 566667777665443
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.29 Score=43.78 Aligned_cols=96 Identities=9% Similarity=0.090 Sum_probs=63.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--CCCcccCCHHHHhcCCCCcEEEEcCCCcc-
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--PDAKVYGSYEALLDDKDIDAVYLPLPTSM- 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~D~V~i~~~~~~- 85 (362)
|||.|+|.-.-|...+..|.+. +.++++.. +++...+.+....+.+ .+..-..++.+++...++|+|+-+|.|..
T Consensus 1 m~ILvlGGT~egr~la~~L~~~-g~~v~~s~-~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQ-GIEILVTV-TTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhC-CCeEEEEE-ccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHHHH
Confidence 4799999844599999998866 57777544 4444444443322221 01111234556677788999999999863
Q ss_pred --cHHHHHHHHHcCCeEE-EeCCC
Q 018020 86 --HVKWAISVAQKKKHLL-MEKPM 106 (362)
Q Consensus 86 --h~~~~~~al~~gk~V~-~EKP~ 106 (362)
+......|.+.|.+.+ .|.|.
T Consensus 79 ~is~~a~~a~~~~~ipylR~eR~~ 102 (256)
T TIGR00715 79 QITTNATAVCKELGIPYVRFERPP 102 (256)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCC
Confidence 6778888889997755 88774
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.22 Score=46.91 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=58.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH--------HHHcCC--CCCCcccCCHHHHhcCCCCcE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF--------AKANNF--PPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~--------~~~~~~--~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+..||+|||||..|...+..|.+.+--+|+ ++|.+.-....+ .++.|. + + .+-+.+.+..-.+++
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~-LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~---K-Vevaa~rl~~in~~I 249 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKTPVREIH-LFDGDDFLQHNAFRSPGAASIEELREAPK---K-VDYFKSRYSNMRRGI 249 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHcCCCEEE-EECCCEecccccccccccCCHhHcCCcch---H-HHHHHHHHHHhCCeE
Confidence 356999999999999999999888534444 777643111111 122221 1 1 111333333323444
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHH-HHHHHHHcCCEEE
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDV-ILNACEENGVQLM 128 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~-l~~~a~~~~~~~~ 128 (362)
..+.. ....+-+ ..+ .+..++++ |.+-.+++. |.+.|.+.++++.
T Consensus 250 ~~~~~--~I~~~n~-~~L-~~~DiV~d---cvDn~~aR~~ln~~a~~~gIP~I 295 (393)
T PRK06153 250 VPHPE--YIDEDNV-DEL-DGFTFVFV---CVDKGSSRKLIVDYLEALGIPFI 295 (393)
T ss_pred EEEee--cCCHHHH-HHh-cCCCEEEE---cCCCHHHHHHHHHHHHHcCCCEE
Confidence 43332 2222222 233 45566663 555555555 5567788888765
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.41 Score=44.13 Aligned_cols=70 Identities=19% Similarity=0.189 Sum_probs=51.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc--CCCCCCcccCCHHHHhcC-CCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN--NFPPDAKVYGSYEALLDD-KDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~e~l~~-~~~D~V~i~~ 81 (362)
+..||+||++-||+..+-.+.++ ++.|. +++|+..+.+.+-++- |.+ +.-..|+++++.. ..|-.|++-.
T Consensus 6 ~~digLiGLaVMGqnLiLN~~d~-Gf~v~-~yNRT~skvD~flaneak~~~--i~ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 6 KADIGLIGLAVMGQNLILNIADK-GFTVC-AYNRTTSKVDEFLANEAKGTK--IIGAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred ccchhhhhHhhhhhhhhhccccc-CceEE-EeccchHhHHHHHHHhhcCCc--ccCCCCHHHHHHhcCCCcEEEEEe
Confidence 58999999999999998888777 78755 7999888887764432 221 3346899998764 4566666543
|
|
| >PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.41 Score=45.11 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 45 KATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
...+.++++|++--+.+ ..+++.+.+ - +|++-|++..-.+.+++..+.+.||+|++.++++.++++....++....
T Consensus 173 ~L~~~~~~~Gl~~~t~v~d~~~~~~l~~-~-vd~lkI~s~~~~n~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~ 250 (360)
T PRK12595 173 ILKQVADEYGLAVISEIVNPADVEVALD-Y-VDVIQIGARNMQNFELLKAAGRVNKPVLLKRGLSATIEEFIYAAEYIMS 250 (360)
T ss_pred HHHHHHHHcCCCEEEeeCCHHHHHHHHH-h-CCeEEECcccccCHHHHHHHHccCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 45677889998611111 123333434 4 9999999999999999999999999999999999999999998888766
Q ss_pred cCC
Q 018020 123 NGV 125 (362)
Q Consensus 123 ~~~ 125 (362)
.|.
T Consensus 251 ~Gn 253 (360)
T PRK12595 251 QGN 253 (360)
T ss_pred CCC
Confidence 543
|
|
| >PRK00885 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.25 Score=47.71 Aligned_cols=112 Identities=13% Similarity=0.086 Sum_probs=61.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHH---hcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL---LDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~---l~~~~~D~V~i~~~~~~ 85 (362)
|||+|||.|......+..+++.++...+.+...++.. ...++.+.+ -+.|.+++ ....++|+|++......
T Consensus 1 ~kvliiG~G~~~~~l~~~l~~~~~~~~i~~~~~n~g~-~~~~~~~~~-----~~~d~~~l~~~~~~~~id~vi~~~e~~l 74 (420)
T PRK00885 1 MKVLVIGSGGREHALAWKLAQSPLVEKVYVAPGNAGT-ALLAENVVI-----DVTDIEALVAFAKEEGIDLTVVGPEAPL 74 (420)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCCHHH-HhhccccCC-----CCCCHHHHHHHHHHhCCCEEEECCchHH
Confidence 6899999998766778788777676555453333322 222222222 13566655 44567999997554433
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHH-HHHHHHHHHcCCE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEF-DVILNACEENGVQ 126 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~-~~l~~~a~~~~~~ 126 (362)
-..++..+-+.|.+++.-.|-+.....= ..+.++++++|++
T Consensus 75 ~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip 116 (420)
T PRK00885 75 VAGIVDAFRAAGLPIFGPTKAAAQLEGSKAFAKDFMARYGIP 116 (420)
T ss_pred HHHHHHHHHHCCCcEECcCHHHHHHHcCHHHHHHHHHHcCCC
Confidence 3444555556787776422211111111 2233456667766
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.51 Score=42.00 Aligned_cols=120 Identities=16% Similarity=0.138 Sum_probs=63.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
.-||+|||+|..|...+..|... ++.-+.++|.+.-....+.++ .|.+ + .+.+.+-|..-.+++-+.+
T Consensus 32 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~---K-a~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAA-GVGTLTLVDFDTVSLSNLQRQVLHDDATIGQP---K-VESARAALARINPHIAIET 106 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCEECcchhhhhhcCChhhCCCh---H-HHHHHHHHHHHCCCCEEEE
Confidence 56999999999999999999876 554455777654222222222 1221 1 1122222322223332222
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
-+.....+-+...++ +-.++++ .+.+.+.-..+.+.|.++++++..+....+
T Consensus 107 ~~~~i~~~~~~~~~~-~~DiVi~--~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~ 158 (245)
T PRK05690 107 INARLDDDELAALIA-GHDLVLD--CTDNVATRNQLNRACFAAKKPLVSGAAIRM 158 (245)
T ss_pred EeccCCHHHHHHHHh-cCCEEEe--cCCCHHHHHHHHHHHHHhCCEEEEeeeccC
Confidence 222222222333333 3455554 345566555677888889988877654433
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.36 Score=47.05 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=57.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHH-cCCCCCCccc-CCH-HHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKA-NNFPPDAKVY-GSY-EALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~-~~~~~~~~~~-~~~-~e~l~~~~~D~V~i~~~ 82 (362)
..+|.|+|.|..|...++.|.+. +.+++ +.|..+. ...++.+. .|+ .++ ... ++.+. ++|+|+++.-
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~-g~~v~-~~d~~~~~~~~~~l~~~~~gi----~~~~g~~~~~~~~--~~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKN-GAEVA-AYDAELKPERVAQIGKMFDGL----VFYTGRLKDALDN--GFDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCCCchhHHHHhhccCCc----EEEeCCCCHHHHh--CCCEEEECCC
Confidence 35899999999999888888877 67766 4565432 12222221 243 232 222 22333 5899998766
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~E 103 (362)
-+...+.+..|.++|.+|+.|
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~ 97 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGD 97 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEh
Confidence 666667888888999998854
|
|
| >cd05284 arabinose_DH_like D-arabinose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.85 E-value=2.5 Score=39.13 Aligned_cols=133 Identities=13% Similarity=0.142 Sum_probs=77.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-------CHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-------SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~l~~~~~D~V~i~~ 81 (362)
-+|.|.|+|.+|...+..++.....+++++ ++++++.+.+ +++|.. .++. .+.++.....+|+|+-++
T Consensus 169 ~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~-~~~~~~~~~~-~~~g~~---~~~~~~~~~~~~i~~~~~~~~~dvvld~~ 243 (340)
T cd05284 169 STVVVIGVGGLGHIAVQILRALTPATVIAV-DRSEEALKLA-ERLGAD---HVLNASDDVVEEVRELTGGRGADAVIDFV 243 (340)
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCCcEEEE-eCCHHHHHHH-HHhCCc---EEEcCCccHHHHHHHHhCCCCCCEEEEcC
Confidence 468999999999988888887744777754 4566666655 677752 1211 122334445799999999
Q ss_pred CCcccHHHHHHHHHcCCeEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc
Q 018020 82 PTSMHVKWAISVAQKKKHLL-MEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~-~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
....+...+.+++..+-.++ +..+-..+... . . .-.+++.+. +........+..+.+++ +++.+-
T Consensus 244 g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~-~---~-~~~~~~~~~-~~~~~~~~~~~~~~~~l-~~g~l~ 309 (340)
T cd05284 244 GSDETLALAAKLLAKGGRYVIVGYGGHGRLPT-S---D-LVPTEISVI-GSLWGTRAELVEVVALA-ESGKVK 309 (340)
T ss_pred CCHHHHHHHHHHhhcCCEEEEEcCCCCCccCH-H---H-hhhcceEEE-EEecccHHHHHHHHHHH-HhCCCC
Confidence 87677788888887764443 32111011111 1 1 113344432 22222234566677777 666654
|
This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d |
| >PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.049 Score=45.33 Aligned_cols=87 Identities=18% Similarity=0.230 Sum_probs=46.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcc---cCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKV---YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-+..++|.|..+......+++.| +++++|++|.++.....- ..++ .+ .+++.+.+...++|-|+|+.|.
T Consensus 78 ~~~~~v~~~~~~~~~~~~l~~~~~~g~~vvg~~d~~~~~~~~~--~~~~----~~lg~~~~l~~~~~~~~id~v~ial~~ 151 (175)
T PF13727_consen 78 RNVLIVGAGGAGRELAEALRSNPRLGYRVVGFVDDDPSDRGPE--IDGV----PVLGDLDDLPELVREHDIDEVIIALPW 151 (175)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--SSSEEEEEEE-S-GGGTT-E--ETTE----EEE--GGGHHHHHHHHT--EEEE--TT
T ss_pred cceEEEEEechHHHHHHHHHhhhhcCceEEEEEeCchhhccCc--ccCc----eeEcCHHHHHHHHHhCCCCEEEEEcCc
Confidence 34467888877888888887765 689999999876432110 0122 23 3566666777789999999988
Q ss_pred cccH---HHHHHHHHcCCeEE
Q 018020 84 SMHV---KWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~---~~~~~al~~gk~V~ 101 (362)
..+. +++..|-+.|.+|.
T Consensus 152 ~~~~~i~~ii~~~~~~~v~v~ 172 (175)
T PF13727_consen 152 SEEEQIKRIIEELENHGVRVR 172 (175)
T ss_dssp S-HHHHHHHHHHHHTTT-EEE
T ss_pred cCHHHHHHHHHHHHhCCCEEE
Confidence 7653 33334444455544
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.36 Score=42.44 Aligned_cols=36 Identities=11% Similarity=0.167 Sum_probs=28.6
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+..||+|||+|..|...+..|... ++.-+.++|.+.
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~-Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAA-GVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCE
Confidence 356999999999999999999877 555555777644
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.18 Score=46.73 Aligned_cols=73 Identities=21% Similarity=0.186 Sum_probs=43.1
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCc------EEEEEEcCCH--HHHHHHHHHcC-C--C--CCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNA------VLSAVASRSL--EKATNFAKANN-F--P--PDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~------~vv~v~d~~~--~~~~~~~~~~~-~--~--~~~~~~~~~~e~l~~~ 72 (362)
+++||+|||+ |..|...+..+...+-+ +|+ ++|.++ ++++..+.+.. . + +++.+..+-.+-++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~-L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~-- 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLH-LLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK-- 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEE-EEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC--
Confidence 5899999998 99999887777655323 554 888854 33443333321 1 0 11223333334444
Q ss_pred CCcEEEEcCC
Q 018020 73 DIDAVYLPLP 82 (362)
Q Consensus 73 ~~D~V~i~~~ 82 (362)
+.|+|+|+.-
T Consensus 79 daDvVVitAG 88 (323)
T TIGR01759 79 DVDAALLVGA 88 (323)
T ss_pred CCCEEEEeCC
Confidence 4899998643
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.97 Score=38.42 Aligned_cols=113 Identities=14% Similarity=0.055 Sum_probs=59.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH---HHHHHHcCCCCCCc-ccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA---TNFAKANNFPPDAK-VYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|.=||||. |..-....+..|+.++++ +|++++.. +..+++.+++. +. ...+..++.....+|+|+...-.
T Consensus 46 g~~VLDiGcGt-G~~al~la~~~~~~~V~g-iD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~~~~fDlV~~~~~~ 122 (187)
T PRK00107 46 GERVLDVGSGA-GFPGIPLAIARPELKVTL-VDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQEEKFDVVTSRAVA 122 (187)
T ss_pred CCeEEEEcCCC-CHHHHHHHHHCCCCeEEE-EeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCCCCCccEEEEcccc
Confidence 46789999987 432222233456788775 58887543 34444555431 22 34566665444579999974211
Q ss_pred --cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 84 --SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 84 --~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
..-.+.+.+.|+.|-.+++..+. ....++.++++.+|..+
T Consensus 123 ~~~~~l~~~~~~LkpGG~lv~~~~~----~~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 123 SLSDLVELCLPLLKPGGRFLALKGR----DPEEEIAELPKALGGKV 164 (187)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeCC----ChHHHHHHHHHhcCceE
Confidence 11122334455555555544332 23334555555555554
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.37 Score=47.03 Aligned_cols=85 Identities=13% Similarity=0.174 Sum_probs=55.4
Q ss_pred EEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHH-HHHHHHHHcCCCCCCcccCC-HHHHhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLE-KATNFAKANNFPPDAKVYGS-YEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~-~~~~~~~~~~~~~~~~~~~~-~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+|-+||.|..|.. .+..|++. +.+|. ++|.... ..+.+ ++.|+. ++.. -.+.++ ++|+|+++.--...
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~-G~~v~-~~D~~~~~~~~~l-~~~gi~----~~~g~~~~~~~--~~d~vV~spgi~~~ 71 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR-GYQVS-GSDIAENATTKRL-EALGIP----IYIGHSAENLD--DADVVVVSAAIKDD 71 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC-CCeEE-EECCCcchHHHHH-HHCcCE----EeCCCCHHHCC--CCCEEEECCCCCCC
Confidence 4789999999987 78888877 78866 6786443 22333 334553 3322 223444 48988876544445
Q ss_pred HHHHHHHHHcCCeEEEe
Q 018020 87 VKWAISVAQKKKHLLME 103 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~E 103 (362)
.+.+.+|.++|.+|+.|
T Consensus 72 ~p~~~~a~~~~i~v~~~ 88 (448)
T TIGR01082 72 NPEIVEAKERGIPVIRR 88 (448)
T ss_pred CHHHHHHHHcCCceEeH
Confidence 56778888999998854
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.085 Score=49.46 Aligned_cols=90 Identities=7% Similarity=-0.038 Sum_probs=55.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcE---EEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAV---LSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~---vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+||||||+ |-.|+.++..|..++.+. +..+.+.. .+.+ .-.++-. . ....++++.-...++|+|+.+.+..
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~--s~g~-~~~f~~~-~-~~v~~~~~~~~~~~vDivffa~g~~ 75 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQ--LGQA-APSFGGT-T-GTLQDAFDIDALKALDIIITCQGGD 75 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchh--hCCC-cCCCCCC-c-ceEEcCcccccccCCCEEEEcCCHH
Confidence 47999997 777999999998666554 44344321 1111 1112110 0 1222332221113699999999999
Q ss_pred ccHHHHHHHHHcCCe-EEEe
Q 018020 85 MHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~-V~~E 103 (362)
...++..++.++|.. +.++
T Consensus 76 ~s~~~~p~~~~aG~~~~VID 95 (366)
T TIGR01745 76 YTNEIYPKLRESGWQGYWID 95 (366)
T ss_pred HHHHHHHHHHhCCCCeEEEE
Confidence 999999999999963 4443
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.25 Score=45.74 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=27.9
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
.++.||+|||+ |.+|...+..+...+...-+.++|++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~ 43 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV 43 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC
Confidence 45679999999 99999988888755444444578873
|
|
| >PRK05784 phosphoribosylamine--glycine ligase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.42 Score=47.01 Aligned_cols=88 Identities=13% Similarity=0.092 Sum_probs=52.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcC--CHHHHH---HHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASR--SLEKAT---NFAKANNFPPDAKVYGSYEALL---DDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~--~~~~~~---~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i 79 (362)
|||.|||.|......+..+++.| +.+++.+ .. ++.... .+..++ +. .-..|.++++ ...++|+|++
T Consensus 1 mkVLviG~Ggrehal~~~l~~s~~g~~v~~~-~g~~Npg~~~~~~~~~~~~-~~---~~~~d~~~l~~~a~~~~id~Vi~ 75 (486)
T PRK05784 1 MKVLLVGDGAREHALAEALEKSTKGYKVYAL-SSYLNPGINSVVKATGGEY-FI---GNINSPEEVKKVAKEVNPDLVVI 75 (486)
T ss_pred CEEEEECCchhHHHHHHHHHhCCCCCEEEEE-ECCCChhheeecccccCce-Ee---cCCCCHHHHHHHHHHhCCCEEEE
Confidence 58999999987777888888887 5676654 43 443211 111111 11 1134666654 4568999998
Q ss_pred cCCCcccHHHHHHHHHcCCeEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~ 101 (362)
......-..++..+-+.|.+++
T Consensus 76 g~E~~l~~glad~l~~~Gi~v~ 97 (486)
T PRK05784 76 GPEEPLFAGVADVLREEGFPVF 97 (486)
T ss_pred CCchHHHHHHHHHHHhCCCCEE
Confidence 6544444455555556666654
|
|
| >TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.38 Score=46.84 Aligned_cols=69 Identities=16% Similarity=0.145 Sum_probs=45.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~~ 83 (362)
-|+.|||+|..|......+++.| +++++|+++.+.+.. ...|+ .++.+ +.++++..++|-|+++.|.
T Consensus 125 rrvLIIGag~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~----~i~gv----pVlG~~~dl~~~v~~~~Id~ViIAlp~ 196 (442)
T TIGR03013 125 RRILVLGTGPRAREIARLRRSSDRRGHEIVGFVPLPDEPA----YVPSE----HVIENGDGLVEYVLRHRIDEIVIALDE 196 (442)
T ss_pred CcEEEEECCHHHHHHHHHHHhCccCCeEEEEEEcCCcccc----ccCCC----cccCCHHHHHHHHHhCCCCEEEEECch
Confidence 47999999998887744444444 689999995432211 12233 35554 5556777889999999985
Q ss_pred cc
Q 018020 84 SM 85 (362)
Q Consensus 84 ~~ 85 (362)
..
T Consensus 197 ~~ 198 (442)
T TIGR03013 197 RR 198 (442)
T ss_pred hh
Confidence 43
|
Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.19 Score=45.19 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=45.2
Q ss_pred EEEEec-cHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcC------CCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 11 FGIIGA-ADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANN------FPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|+|||+ |.+|...+..+...+ ...-+.++|+++++++..+.+.. ....+...+|..+.+++ .|+|+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~--aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD--ADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--CCEEEECC
Confidence 589999 989998888776554 32334588998877665444321 01123345666677765 99999965
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.34 E-value=1.5 Score=42.46 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=77.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEE-------c---CCHHHH---HHHHHHcC---------CCCCCcccCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVA-------S---RSLEKA---TNFAKANN---------FPPDAKVYGS 64 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~-------d---~~~~~~---~~~~~~~~---------~~~~~~~~~~ 64 (362)
+..||+|=|+|+.|...+..|.+. +++|++|. | .+.++. .+..++.+ . ++++.. +
T Consensus 227 ~g~~vaIQGfGnVG~~aA~~L~e~-GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~-~ga~~i-~ 303 (445)
T PRK14030 227 KGKTVAISGFGNVAWGAATKATEL-GAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKF-PGSTFF-A 303 (445)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcC-CCCEEc-C
Confidence 357999999999999988888776 89999974 4 355552 22322222 1 122322 4
Q ss_pred HHHHhcCCCCcEEEE-cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 65 YEALLDDKDIDAVYL-PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 65 ~~e~l~~~~~D~V~i-~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.++++.. ++|+.+= ++.+.-+.+-+....+++..+++|--=..+..+|.+ ..+++|+.+..
T Consensus 304 ~~~~~~~-~cDVliPcAl~n~I~~~na~~l~~~~ak~V~EgAN~p~t~eA~~---iL~~rGI~~vP 365 (445)
T PRK14030 304 GKKPWEQ-KVDIALPCATQNELNGEDADKLIKNGVLCVAEVSNMGCTAEAID---KFIAAKQLFAP 365 (445)
T ss_pred Cccceec-cccEEeeccccccCCHHHHHHHHHcCCeEEEeCCCCCCCHHHHH---HHHHCCCEEeC
Confidence 5667764 7998885 577778888888888889999999633333444444 44667777643
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.27 Score=45.47 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=43.0
Q ss_pred eEEEEEec-cHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHc-CCCCCCcc----cCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKAN-NFPPDAKV----YGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~----~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+ |.+|...+..+.. .+....+.++|+++. ++..+-++ ..+....+ .+++.+.++ ++|+|+++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~--~~DiVIita 77 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALE--GADVVLISA 77 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcC--CCCEEEEcC
Confidence 68999999 9999988877744 444555667887643 22111111 11111112 246555565 499999976
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
-.
T Consensus 78 G~ 79 (312)
T PRK05086 78 GV 79 (312)
T ss_pred CC
Confidence 54
|
|
| >PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.67 Score=45.56 Aligned_cols=81 Identities=16% Similarity=0.123 Sum_probs=54.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH---HhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA---LLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e---~l~~~~~D~V~i~~~~ 83 (362)
-++.|||+|..|...+..+++.| +++++|++|.++.. . .-.|+ .++.+.++ ......+|+ +|+.|.
T Consensus 147 rrvLIIGaG~~a~~l~~~L~~~~~~g~~vVGfIDd~~~~-~---~i~gv----PVlg~~d~l~~~~~~~~v~v-IIAip~ 217 (476)
T PRK15204 147 KKTIILGSGQNARGAYSALQSEEMMGFDVIAFFDTDASD-A---EINML----PVIKDTEIIWDLNRTGDVHY-ILAYEY 217 (476)
T ss_pred CeEEEEECCHHHHHHHHHHHhCccCCcEEEEEEcCCccc-c---ccCCC----cccCCHHHHHHHHHhCCCcE-EEEeCc
Confidence 57999999999999999988765 68999999976542 1 12344 35555543 333445674 777775
Q ss_pred cc---cHHHHHHHHHcCC
Q 018020 84 SM---HVKWAISVAQKKK 98 (362)
Q Consensus 84 ~~---h~~~~~~al~~gk 98 (362)
.. ..+++..+.+.|.
T Consensus 218 ~~~~~r~~il~~l~~~gv 235 (476)
T PRK15204 218 TELEKTHFWLRELSKHHC 235 (476)
T ss_pred CcHHHHHHHHHHHhhcCC
Confidence 53 3456667777675
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.14 Score=47.57 Aligned_cols=72 Identities=18% Similarity=0.130 Sum_probs=43.5
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCC------cEEEEEEcCCHH--HHHHHHHHc-CC----CCCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPN------AVLSAVASRSLE--KATNFAKAN-NF----PPDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~------~~vv~v~d~~~~--~~~~~~~~~-~~----~~~~~~~~~~~e~l~~~ 72 (362)
+++||+|+|+ |++|...+..+...+- .+|+ +.|+++. .++..+-++ +. ..+.....++.+.+++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~-L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~- 78 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILH-LLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD- 78 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEE-EEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC-
Confidence 4799999999 9999998888866432 3666 5677442 222211111 00 0122335666666764
Q ss_pred CCcEEEEcC
Q 018020 73 DIDAVYLPL 81 (362)
Q Consensus 73 ~~D~V~i~~ 81 (362)
+|+|+++.
T Consensus 79 -aDiVI~tA 86 (325)
T cd01336 79 -VDVAILVG 86 (325)
T ss_pred -CCEEEEeC
Confidence 99999853
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.68 Score=43.49 Aligned_cols=90 Identities=12% Similarity=-0.006 Sum_probs=57.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC---CHHHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR---SLEKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~---~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-+|.|+|+|.+|...+..++.. +++++++ ++ ++++.+ +++++|... ..+ +++.+......+|+|+.++..
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~-~~~~~~~~~~~-~~~~~Ga~~--v~~~~~~~~~~~~~~~~d~vid~~g~ 248 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLR-GFEVYVL-NRRDPPDPKAD-IVEELGATY--VNSSKTPVAEVKLVGEFDLIIEATGV 248 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEE-ecCCCCHHHHH-HHHHcCCEE--ecCCccchhhhhhcCCCCEEEECcCC
Confidence 4789999999999888888776 6776654 44 555544 667787531 111 122221122368999999987
Q ss_pred cccHHHHHHHHHcC-CeEEEe
Q 018020 84 SMHVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~E 103 (362)
......+..+++.| +=|++-
T Consensus 249 ~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 249 PPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred HHHHHHHHHHccCCcEEEEEe
Confidence 66667777777776 444444
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.62 Score=49.13 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=56.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-------------------HHHHHHH---HHcCCCCCCcc--c
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-------------------EKATNFA---KANNFPPDAKV--Y 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-------------------~~~~~~~---~~~~~~~~~~~--~ 62 (362)
+.-||+|||+|..|..++..|... ++.-+.++|.+. .+++..+ .+.| |.+++ +
T Consensus 331 ~~srVlVvGlGGlGs~ia~~LAra-GVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~IN--P~v~I~~~ 407 (989)
T PRK14852 331 LRSRVAIAGLGGVGGIHLMTLART-GIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVN--PFLDIRSF 407 (989)
T ss_pred hcCcEEEECCcHHHHHHHHHHHHc-CCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHC--CCCeEEEE
Confidence 357899999999999999988776 333334555321 1222222 2222 22221 2
Q ss_pred ------CCHHHHhcCCCCcEEEEcCCCcc---cHHHHHHHHHcCCeEEEeCC
Q 018020 63 ------GSYEALLDDKDIDAVYLPLPTSM---HVKWAISVAQKKKHLLMEKP 105 (362)
Q Consensus 63 ------~~~~e~l~~~~~D~V~i~~~~~~---h~~~~~~al~~gk~V~~EKP 105 (362)
++.+++++ ++|+|+-++.+.. ...+...|.+.|++++..-+
T Consensus 408 ~~~I~~en~~~fl~--~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~ 457 (989)
T PRK14852 408 PEGVAAETIDAFLK--DVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGP 457 (989)
T ss_pred ecCCCHHHHHHHhh--CCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeec
Confidence 34566665 4888888777632 35556677788887765433
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.53 Score=42.89 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=25.4
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
||+|||+|..|...++.|... ++.=+.++|.+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a-GVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW-GVRHITFVDSG 32 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEECCC
Confidence 689999999999999998766 55545577754
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.26 Score=46.76 Aligned_cols=74 Identities=18% Similarity=0.165 Sum_probs=44.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCC------cEEEEE-EcCCHHHHHHHHHHcC--C-C--CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPN------AVLSAV-ASRSLEKATNFAKANN--F-P--PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~------~~vv~v-~d~~~~~~~~~~~~~~--~-~--~~~~~~~~~~e~l~~~~ 73 (362)
+++||+|||+ |..|...+..+....- +.|+-+ +|+++++++..+-+.. . + ..+.+..+-.+-++ +
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~k--d 120 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFE--D 120 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhC--C
Confidence 4899999999 9999988777654432 234323 4888887765544421 0 0 12232333334444 4
Q ss_pred CcEEEEcCC
Q 018020 74 IDAVYLPLP 82 (362)
Q Consensus 74 ~D~V~i~~~ 82 (362)
.|+|+|+..
T Consensus 121 aDIVVitAG 129 (387)
T TIGR01757 121 ADWALLIGA 129 (387)
T ss_pred CCEEEECCC
Confidence 899999543
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.32 Score=44.40 Aligned_cols=96 Identities=28% Similarity=0.248 Sum_probs=56.5
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||.|+|+ |.+|......+... +.+++++ ++. ++++ .-.+.+.+++...++|+|+.+.-... .
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~-~r~---------~~dl----~d~~~~~~~~~~~~pd~Vin~aa~~~-~ 64 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKER-GYEVIAT-SRS---------DLDL----TDPEAVAKLLEAFKPDVVINCAAYTN-V 64 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTT-SEEEEEE-STT---------CS-T----TSHHHHHHHHHHH--SEEEE-------H
T ss_pred CEEEEECCCCHHHHHHHHHHhhC-CCEEEEe-Cch---------hcCC----CCHHHHHHHHHHhCCCeEeccceeec-H
Confidence 79999995 88999999999874 7888876 554 2332 22345566677667999998753210 0
Q ss_pred HHHHHHHHcCCeEEEeCC----CCCCHHHHHHHHHHHHHcCCEE-EEeee
Q 018020 88 KWAISVAQKKKHLLMEKP----MALNVAEFDVILNACEENGVQL-MDGTM 132 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP----~~~~~~~~~~l~~~a~~~~~~~-~v~~~ 132 (362)
. .||+- ...+......|.+.|++.|.++ ++...
T Consensus 65 ---~---------~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 65 ---D---------ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp ---H---------HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEG
T ss_pred ---H---------hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeecc
Confidence 0 11111 1235567778888998888765 34443
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=93.06 E-value=1.6 Score=36.91 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=64.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHH---HHHHHHcCCCCCCc-ccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKA---TNFAKANNFPPDAK-VYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|.=||||. |..-.......+..+++ .+|.+++.. ++.+++.+++ ++. ...|.+++.....+|+|+...-.
T Consensus 43 ~~~vLDiGcGt-G~~s~~la~~~~~~~V~-~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGA-GFPGIPLAIARPELKLT-LLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRALA 119 (181)
T ss_pred CCeEEEecCCC-CccHHHHHHHCCCCeEE-EEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehhhh
Confidence 45788999987 43222222334567766 568887643 3444555553 222 34677776445679988754311
Q ss_pred c--ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 84 S--MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 84 ~--~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
. .-.+.+...|+.|-.+++..+ .....++..+.+.+...|..
T Consensus 120 ~~~~~~~~~~~~LkpgG~lvi~~~-~~~~~~~~~~~e~~~~~~~~ 163 (181)
T TIGR00138 120 SLNVLLELTLNLLKVGGYFLAYKG-KKYLDEIEEAKRKCQVLGVE 163 (181)
T ss_pred CHHHHHHHHHHhcCCCCEEEEEcC-CCcHHHHHHHHHhhhhcCce
Confidence 0 112334455666666666654 45667777776666666654
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.25 Score=47.66 Aligned_cols=74 Identities=18% Similarity=0.140 Sum_probs=46.5
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcC-------CC-cEEEEEEcCCHHHHHHHHHHcC--C-C--CCCcccCCHHHHhcC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLA-------PN-AVLSAVASRSLEKATNFAKANN--F-P--PDAKVYGSYEALLDD 71 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~-------~~-~~vv~v~d~~~~~~~~~~~~~~--~-~--~~~~~~~~~~e~l~~ 71 (362)
.+++||+|||+ |.+|...+..+... +- .+|+ +.|+++++++..+-++. . + ..+.+..+-.+-++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLv-liD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~k- 175 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLL-GSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQ- 175 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEE-EEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhC-
Confidence 35799999999 99999887776543 22 3555 77999888776554431 1 0 12232233334444
Q ss_pred CCCcEEEEcCC
Q 018020 72 KDIDAVYLPLP 82 (362)
Q Consensus 72 ~~~D~V~i~~~ 82 (362)
+.|+|+|...
T Consensus 176 -daDiVVitAG 185 (444)
T PLN00112 176 -DAEWALLIGA 185 (444)
T ss_pred -cCCEEEECCC
Confidence 3899998644
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.67 Score=45.04 Aligned_cols=87 Identities=9% Similarity=-0.013 Sum_probs=55.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH--HHHHHHHcCCCCCCcccC--CHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK--ATNFAKANNFPPDAKVYG--SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--~~~~~~~~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+|.+||.|..|..-+..+++. +.++. ++|..... ...+. + |++ ++. ...+.+. +.|+|+.+.--
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~-G~~v~-~~D~~~~~~~~~~l~-~-g~~----~~~~~~~~~~~~--~~d~vv~spgi 75 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLAR-GVTPR-VIDTRITPPGLDKLP-E-NVE----RHTGSLNDEWLL--AADLIVASPGI 75 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCeEE-EEcCCCCchhHHHHh-c-CCE----EEeCCCCHHHhc--CCCEEEECCCC
Confidence 34799999999999888777766 67766 46653321 22231 1 542 222 1223343 47877665544
Q ss_pred cccHHHHHHHHHcCCeEEEeC
Q 018020 84 SMHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EK 104 (362)
+.+.+.+.+|.++|.+|+.|-
T Consensus 76 ~~~~~~~~~a~~~g~~v~~~~ 96 (438)
T PRK03806 76 ALAHPSLSAAADAGIEIVGDI 96 (438)
T ss_pred CCCCHHHHHHHHCCCeEEEHH
Confidence 455678888999999998863
|
|
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=92.97 E-value=2.3 Score=40.07 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=57.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CH----HHHhcCCCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SY----EALLDDKDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~----~e~l~~~~~D~V~i~~ 81 (362)
+|.|+|+|.+|...+..++.. +...+.++++++++.+.+ +++|.. .+.-+. ++ .++.. ..+|+|+-++
T Consensus 186 ~vlI~g~g~vG~~a~~~a~~~-G~~~v~~~~~~~~~~~~~-~~~g~~-~~v~~~~~~~~~~~~l~~~~~-~~~d~vid~~ 261 (365)
T cd05279 186 TCAVFGLGGVGLSVIMGCKAA-GASRIIAVDINKDKFEKA-KQLGAT-ECINPRDQDKPIVEVLTEMTD-GGVDYAFEVI 261 (365)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHH-HHhCCC-eecccccccchHHHHHHHHhC-CCCcEEEECC
Confidence 678889999999888877766 666555677777776655 677753 111111 22 12333 4699999988
Q ss_pred CCcccHHHHHHHHH-cCCeE
Q 018020 82 PTSMHVKWAISVAQ-KKKHL 100 (362)
Q Consensus 82 ~~~~h~~~~~~al~-~gk~V 100 (362)
........+.++++ .+-.+
T Consensus 262 g~~~~~~~~~~~l~~~~G~~ 281 (365)
T cd05279 262 GSADTLKQALDATRLGGGTS 281 (365)
T ss_pred CCHHHHHHHHHHhccCCCEE
Confidence 76667777888887 65443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=92.94 E-value=4.4 Score=37.56 Aligned_cols=87 Identities=11% Similarity=0.058 Sum_probs=56.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHH-HhcCCCCcEEEEcCCCccc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEA-LLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e-~l~~~~~D~V~i~~~~~~h 86 (362)
+|.|.|+|.+|......++.. +++++.+ ++++++.+ +++++|.. .+.-+ .++.+ +.....+|+++-++.....
T Consensus 166 ~vlV~g~g~iG~~~~~~a~~~-G~~vi~~-~~~~~~~~-~~~~~g~~-~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~ 241 (333)
T cd08296 166 LVAVQGIGGLGHLAVQYAAKM-GFRTVAI-SRGSDKAD-LARKLGAH-HYIDTSKEDVAEALQELGGAKLILATAPNAKA 241 (333)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCeEEEE-eCChHHHH-HHHHcCCc-EEecCCCccHHHHHHhcCCCCEEEECCCchHH
Confidence 689999999999888888877 6776654 55666555 44777752 10011 12322 3333468999987765667
Q ss_pred HHHHHHHHHcCCeE
Q 018020 87 VKWAISVAQKKKHL 100 (362)
Q Consensus 87 ~~~~~~al~~gk~V 100 (362)
.+.+.++++.+-++
T Consensus 242 ~~~~~~~l~~~G~~ 255 (333)
T cd08296 242 ISALVGGLAPRGKL 255 (333)
T ss_pred HHHHHHHcccCCEE
Confidence 77778888776443
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.36 Score=44.48 Aligned_cols=80 Identities=19% Similarity=0.133 Sum_probs=49.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----CC----CcccCCHHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----PD----AKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~~----~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|||.|+|+|.+|..++-.|.+.+ .. |-+.-|++. ++++.+. |+. .+ .....+-.+.+ .+.|+|+|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~-V~~~~R~~~-~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~--~~~Dlviv~ 74 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HD-VTLLVRSRR-LEALKKK-GLRIEDEGGNFTTPVVAATDAEAL--GPADLVIVT 74 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-Ce-EEEEecHHH-HHHHHhC-CeEEecCCCccccccccccChhhc--CCCCEEEEE
Confidence 68999999999999988888885 33 445556554 6776654 321 00 01111111222 258999999
Q ss_pred CCCcccHHHHHHHH
Q 018020 81 LPTSMHVKWAISVA 94 (362)
Q Consensus 81 ~~~~~h~~~~~~al 94 (362)
+-...-.+.+....
T Consensus 75 vKa~q~~~al~~l~ 88 (307)
T COG1893 75 VKAYQLEEALPSLA 88 (307)
T ss_pred eccccHHHHHHHhh
Confidence 88866555554443
|
|
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.94 Score=41.64 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=61.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
=+|.|.|+|.+|...+..++.. +++++++ +.++++.+.+ +++|.. ...++++......+|+++.++......+
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~-G~~vi~~-~~~~~~~~~~-~~~g~~----~~~~~~~~~~~~~~d~vid~~g~~~~~~ 229 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALT-GPDVVLV-GRHSEKLALA-RRLGVE----TVLPDEAESEGGGFDVVVEATGSPSGLE 229 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEE-cCCHHHHHHH-HHcCCc----EEeCccccccCCCCCEEEECCCChHHHH
Confidence 4688899999999888888877 7776644 5566666544 457753 2222233344457999999988777788
Q ss_pred HHHHHHHcCCeEEE
Q 018020 89 WAISVAQKKKHLLM 102 (362)
Q Consensus 89 ~~~~al~~gk~V~~ 102 (362)
.+.++++.+-++.+
T Consensus 230 ~~~~~l~~~g~~v~ 243 (319)
T cd08242 230 LALRLVRPRGTVVL 243 (319)
T ss_pred HHHHHhhcCCEEEE
Confidence 88889988877765
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.85 E-value=1.3 Score=40.95 Aligned_cols=91 Identities=12% Similarity=0.096 Sum_probs=59.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-----HHh---cCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-----ALL---DDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----e~l---~~~~~D~V~i~ 80 (362)
-.|+++|+|.+|..-+..++.. +...+..+|.++++.+ ++++||-. .++++.+ +.+ .+..+|.++.+
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~a-gA~~IiAvD~~~~Kl~-~A~~fGAT---~~vn~~~~~~vv~~i~~~T~gG~d~~~e~ 261 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAA-GAGRIIAVDINPEKLE-LAKKFGAT---HFVNPKEVDDVVEAIVELTDGGADYAFEC 261 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHc-CCceEEEEeCCHHHHH-HHHhcCCc---eeecchhhhhHHHHHHHhcCCCCCEEEEc
Confidence 4689999999999888887766 5545556789887554 67888864 3343322 222 22367777777
Q ss_pred CCCcccHHHHHHHHHcC-CeEEEeC
Q 018020 81 LPTSMHVKWAISVAQKK-KHLLMEK 104 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g-k~V~~EK 104 (362)
+-+..+...+.++...+ +-|++--
T Consensus 262 ~G~~~~~~~al~~~~~~G~~v~iGv 286 (366)
T COG1062 262 VGNVEVMRQALEATHRGGTSVIIGV 286 (366)
T ss_pred cCCHHHHHHHHHHHhcCCeEEEEec
Confidence 77766666666666443 5555543
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.77 Score=39.40 Aligned_cols=116 Identities=11% Similarity=0.193 Sum_probs=62.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---------cCCCCCCcccCCHHHHhcC--CCCcE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---------NNFPPDAKVYGSYEALLDD--KDIDA 76 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~e~l~~--~~~D~ 76 (362)
..||.|||+|..|...++.|... ++.-+.++|.+.-....+.++ .|.+ ++ ....+-|+. +++.+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~-GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~---Ka-~~~~~~L~~lNp~v~i 93 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLA-GIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMN---RA-AASYEFLQELNPNVKL 93 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCcCChhcCcccEecccchhhcCch---HH-HHHHHHHHHHCCCCEE
Confidence 57899999999999999999766 666566888654222222221 1111 11 111222222 23333
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
..+......+.+.....++ ...|++. ...+.+....+-+.|+++++++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~-~~dvVi~--~~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 94 SIVEEDSLSNDSNIEEYLQ-KFTLVIA--TEENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred EEEecccccchhhHHHHHh-CCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3332222112233333333 3345543 23456777778888888888876654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.17 Score=47.00 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=40.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCC------cEEEEEEcCCHH--HHHHHHHHc-C----CCCCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPN------AVLSAVASRSLE--KATNFAKAN-N----FPPDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~------~~vv~v~d~~~~--~~~~~~~~~-~----~~~~~~~~~~~~e~l~~~ 72 (362)
.+.||+|||+ |.+|...+..+....- .+|+ ++|.++. +++..+.+. + ....+.+..+..+-++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~-LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~-- 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQ-LLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFK-- 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEE-EEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhC--
Confidence 5789999998 9999987766543322 2444 7887432 233222211 0 0012233433334444
Q ss_pred CCcEEEEcCC
Q 018020 73 DIDAVYLPLP 82 (362)
Q Consensus 73 ~~D~V~i~~~ 82 (362)
+.|+|+|+.-
T Consensus 80 daDiVVitaG 89 (326)
T PRK05442 80 DADVALLVGA 89 (326)
T ss_pred CCCEEEEeCC
Confidence 4899998643
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=92.78 E-value=4.1 Score=39.14 Aligned_cols=91 Identities=15% Similarity=0.120 Sum_probs=56.2
Q ss_pred EEEEEe-ccHHHHHHHHHHhcCC-Cc-EEEEEEcCCHHHHHHHHHHcCCCC---CCc--cc-----CCHHH----HhcCC
Q 018020 10 RFGIIG-AADIARKLSRAITLAP-NA-VLSAVASRSLEKATNFAKANNFPP---DAK--VY-----GSYEA----LLDDK 72 (362)
Q Consensus 10 ~v~iiG-~G~~g~~~~~~~~~~~-~~-~vv~v~d~~~~~~~~~~~~~~~~~---~~~--~~-----~~~~e----~l~~~ 72 (362)
+|.|+| +|.+|...+..++... +. +++ +.|+++++.+.+.+.++... ++. ++ +++.+ +....
T Consensus 178 ~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi-~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~ 256 (410)
T cd08238 178 NTAILGGAGPMGLMAIDYAIHGPIGPSLLV-VTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQ 256 (410)
T ss_pred EEEEEeCCCHHHHHHHHHHHhcccCCceEE-EEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhCCC
Confidence 789998 6999998888877653 33 454 56888887765544332100 111 11 23333 23334
Q ss_pred CCcEEEEcCCCcccHHHHHHHHHc-CCeEE
Q 018020 73 DIDAVYLPLPTSMHVKWAISVAQK-KKHLL 101 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~al~~-gk~V~ 101 (362)
.+|+|+.++........+.++++. |+-|+
T Consensus 257 g~D~vid~~g~~~~~~~a~~~l~~~G~~v~ 286 (410)
T cd08238 257 GFDDVFVFVPVPELVEEADTLLAPDGCLNF 286 (410)
T ss_pred CCCEEEEcCCCHHHHHHHHHHhccCCeEEE
Confidence 689999998776777778888874 44443
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.16 Score=47.12 Aligned_cols=74 Identities=15% Similarity=0.103 Sum_probs=41.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcE-----EEEEEcCCHH--HHHHHHHHcC--C-C--CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAV-----LSAVASRSLE--KATNFAKANN--F-P--PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~-----vv~v~d~~~~--~~~~~~~~~~--~-~--~~~~~~~~~~e~l~~~~ 73 (362)
+++||+|||+ |.+|...+..+....-+. -+.++|.+++ +++..+.+.. . + +.+.+..+..+-++ +
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~--d 78 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK--D 78 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC--C
Confidence 4789999999 999998777665432232 3448888433 2333322221 0 0 11233333334444 4
Q ss_pred CcEEEEcCC
Q 018020 74 IDAVYLPLP 82 (362)
Q Consensus 74 ~D~V~i~~~ 82 (362)
.|+|+|+.-
T Consensus 79 aDivvitaG 87 (322)
T cd01338 79 ADWALLVGA 87 (322)
T ss_pred CCEEEEeCC
Confidence 899999643
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.41 Score=39.90 Aligned_cols=71 Identities=13% Similarity=0.173 Sum_probs=47.8
Q ss_pred ceeEEEEEeccHH-HHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADI-ARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~-g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..-||.|||+|.| |...+..|.+. +++ +.+++++. +++.+.+.. .|+|+.+|+...
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~-g~~-V~v~~r~~-------------------~~l~~~l~~--aDiVIsat~~~~ 99 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNR-NAT-VTVCHSKT-------------------KNLKEHTKQ--ADIVIVAVGKPG 99 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhC-CCE-EEEEECCc-------------------hhHHHHHhh--CCEEEEcCCCCc
Confidence 3468999999987 77788888876 566 44777652 245566664 999999998853
Q ss_pred cHHHHHHHHHcCCeEEEe
Q 018020 86 HVKWAISVAQKKKHLLME 103 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~E 103 (362)
-+-...++.| .++++
T Consensus 100 --ii~~~~~~~~-~viID 114 (168)
T cd01080 100 --LVKGDMVKPG-AVVID 114 (168)
T ss_pred --eecHHHccCC-eEEEE
Confidence 2333444444 44444
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.34 Score=44.50 Aligned_cols=68 Identities=16% Similarity=0.143 Sum_probs=40.9
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|+|||+|.+|...+..+....-.+ +.++|+++++++..+-+ .+.........|+++ +. +.|+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~e-V~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~--dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IA--GSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcE-EEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hC--CCCEEEEecC
Confidence 689999999998877776443225 44889987755422211 111111222456665 44 4899998653
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >TIGR00460 fmt methionyl-tRNA formyltransferase | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.41 Score=44.32 Aligned_cols=71 Identities=11% Similarity=0.108 Sum_probs=50.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-----------HHHHHHHHHHcCCCCCCcccCC-----HHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-----------LEKATNFAKANNFPPDAKVYGS-----YEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-----------~~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~~ 72 (362)
|||+++|++.++...+..|.+. +.++++|+... ....+.+|.+.|+| +....+ .-+.+.+.
T Consensus 1 mkIvf~Gs~~~a~~~L~~L~~~-~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ip--v~~~~~~~~~~~~~~l~~~ 77 (313)
T TIGR00460 1 LRIVFFGTPTFSLPVLEELRED-NFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIP--VFQPEKQRQLEELPLVREL 77 (313)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCC--EEecCCCCcHHHHHHHHhh
Confidence 5899999999999988888765 58899988532 12378889999987 111222 22334556
Q ss_pred CCcEEEEcCC
Q 018020 73 DIDAVYLPLP 82 (362)
Q Consensus 73 ~~D~V~i~~~ 82 (362)
++|+++++.-
T Consensus 78 ~~Dliv~~~~ 87 (313)
T TIGR00460 78 KPDVIVVVSF 87 (313)
T ss_pred CCCEEEEccc
Confidence 8999988754
|
The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.65 E-value=2.5 Score=36.31 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCc-ccCCH-HHH---hcCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDAK-VYGSY-EAL---LDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~-~~~~~-~e~---l~~~~~D~V~i 79 (362)
..+|.=||||. |.......+..|+.+++ .+|.+++..+...+. .+.+ ++. +..|. +.+ +....+|+|++
T Consensus 41 ~~~VLDiGcGt-G~~~~~la~~~p~~~v~-gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 41 APIHLEIGFGK-GEFLVEMAKANPDINFI-GIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCeEEEEccCC-CHHHHHHHHHCCCccEE-EEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHHHHcCccccceEEE
Confidence 46789999997 54433334455777766 578888776655443 2332 122 34565 443 34457999987
Q ss_pred cCC
Q 018020 80 PLP 82 (362)
Q Consensus 80 ~~~ 82 (362)
.-|
T Consensus 118 ~~~ 120 (202)
T PRK00121 118 NFP 120 (202)
T ss_pred ECC
Confidence 644
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.64 E-value=0.78 Score=46.96 Aligned_cols=95 Identities=14% Similarity=0.098 Sum_probs=58.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-------------------CHHHHHHHHHHc-CCCCCCc--cc--
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-------------------SLEKATNFAKAN-NFPPDAK--VY-- 62 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-------------------~~~~~~~~~~~~-~~~~~~~--~~-- 62 (362)
+.-||+|||+|..|...+..|... ++.-+-++|. ...+++.+++.. .+.|.+. .+
T Consensus 42 ~~~~VlIvG~GGlGs~va~~Lar~-GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~ 120 (679)
T PRK14851 42 AEAKVAIPGMGGVGGVHLITMVRT-GIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPA 120 (679)
T ss_pred hcCeEEEECcCHHHHHHHHHHHHh-CCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEec
Confidence 357999999999999999988776 3322334443 112333333321 1112211 11
Q ss_pred ----CCHHHHhcCCCCcEEEEcCCCc---ccHHHHHHHHHcCCeEEEeC
Q 018020 63 ----GSYEALLDDKDIDAVYLPLPTS---MHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 63 ----~~~~e~l~~~~~D~V~i~~~~~---~h~~~~~~al~~gk~V~~EK 104 (362)
++.+++++. +|+|+-++.+. ....+...|.+.|+++++--
T Consensus 121 ~i~~~n~~~~l~~--~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 121 GINADNMDAFLDG--VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred CCChHHHHHHHhC--CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 345667764 89999888764 23456667888899888664
|
|
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=2.1 Score=38.54 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 45 KATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
..++.++++|++--+.++ .+.+.+ .+- +|++-|++..-.+.++..++.+.||+|++.++.+.++++.....+..+.
T Consensus 82 ~l~~~~~~~Gl~~~te~~d~~~~~~l-~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~ 159 (266)
T PRK13398 82 ILKEVGDKYNLPVVTEVMDTRDVEEV-ADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMS 159 (266)
T ss_pred HHHHHHHHcCCCEEEeeCChhhHHHH-HHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHh
Confidence 356678889986211111 233333 333 9999999999999999999999999999999999999999999988887
Q ss_pred cCC
Q 018020 123 NGV 125 (362)
Q Consensus 123 ~~~ 125 (362)
.|-
T Consensus 160 ~Gn 162 (266)
T PRK13398 160 EGN 162 (266)
T ss_pred cCC
Confidence 544
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.33 Score=44.46 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=47.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.+||+|+|.+|...+..++.. +..+++-.+..+. +.++.+|+. +-+++|++.. .|++.+-+|-
T Consensus 148 TLgvlG~GrIGseVA~r~k~~-gm~vI~~dpi~~~---~~~~a~gvq-----~vsl~Eil~~--ADFitlH~PL 210 (406)
T KOG0068|consen 148 TLGVLGLGRIGSEVAVRAKAM-GMHVIGYDPITPM---ALAEAFGVQ-----LVSLEEILPK--ADFITLHVPL 210 (406)
T ss_pred EEEEeecccchHHHHHHHHhc-CceEEeecCCCch---HHHHhccce-----eeeHHHHHhh--cCEEEEccCC
Confidence 479999999999999999877 6776754443332 334566753 6799999996 8999987663
|
|
| >PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.86 Score=42.57 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.++.++++|++--+.+ ..+.+.+.+ - +|++-|++.+-...+++.++.+.||+|++-++++.+++|....++.....
T Consensus 157 L~~~~~e~Gl~~~tev~d~~~v~~~~~-~-~d~lqIga~~~~n~~LL~~va~t~kPVllk~G~~~t~ee~~~A~e~i~~~ 234 (352)
T PRK13396 157 LAAAREATGLGIITEVMDAADLEKIAE-V-ADVIQVGARNMQNFSLLKKVGAQDKPVLLKRGMAATIDEWLMAAEYILAA 234 (352)
T ss_pred HHHHHHHcCCcEEEeeCCHHHHHHHHh-h-CCeEEECcccccCHHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4566778898611111 123333333 3 99999999999999999999999999999999999999998888877655
Q ss_pred C
Q 018020 124 G 124 (362)
Q Consensus 124 ~ 124 (362)
|
T Consensus 235 G 235 (352)
T PRK13396 235 G 235 (352)
T ss_pred C
Confidence 4
|
|
| >TIGR00877 purD phosphoribosylamine--glycine ligase | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.39 Score=46.39 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=49.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHHHcCCCCCCcccCCHHHH---hcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAKANNFPPDAKVYGSYEAL---LDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~e~---l~~~~~D~V~i~~~~~ 84 (362)
|||+|||.|..+...+..+++.+.. +..++++ ++..+.. .+..-+. .-+.|.+.+ ....++|+|+......
T Consensus 1 ~kiliiG~G~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~---~~~~d~~~l~~~~~~~~id~vi~~~e~~ 75 (423)
T TIGR00877 1 MKVLVIGNGGREHALAWKLAQSPLV-KYVYVAPGNAGTARL-AKNKNVA---ISITDIEALVEFAKKKKIDLAVIGPEAP 75 (423)
T ss_pred CEEEEECCChHHHHHHHHHHhCCCc-cEEEEECCCHHHhhh-ccccccc---CCCCCHHHHHHHHHHhCCCEEEECCchH
Confidence 6899999999888888888877532 2223343 3332222 2111111 113565554 4456799988654333
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
....++..+-+.|.+++
T Consensus 76 l~~~~~~~l~~~gi~~~ 92 (423)
T TIGR00877 76 LVLGLVDALEEAGIPVF 92 (423)
T ss_pred HHHHHHHHHHHCCCeEE
Confidence 33344555556676655
|
This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. |
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.57 E-value=0.81 Score=42.06 Aligned_cols=102 Identities=10% Similarity=0.182 Sum_probs=63.9
Q ss_pred CceeEEEEEeccHHHHHHHHHHhc----CCCc-EEEE--EEcCCH-HHHHHHHHH-------------cCCCCCCcccCC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITL----APNA-VLSA--VASRSL-EKATNFAKA-------------NNFPPDAKVYGS 64 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~----~~~~-~vv~--v~d~~~-~~~~~~~~~-------------~~~~~~~~~~~~ 64 (362)
+.++||.+||.|.+|...+..+.. +|.+ .-|. +++-.. .+.+.+.+- ..+|+++.+.+|
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 457999999999999987776532 3221 1111 222100 001222221 234567778899
Q ss_pred HHHHhcCCCCcEEEEcCCCcccHHHHHHHH---HcCCe-EEEeCCCCCC
Q 018020 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVA---QKKKH-LLMEKPMALN 109 (362)
Q Consensus 65 ~~e~l~~~~~D~V~i~~~~~~h~~~~~~al---~~gk~-V~~EKP~~~~ 109 (362)
+.+.+.+ .|+++..+|+..-..++.... +.+.+ |-|=|-+...
T Consensus 99 l~ea~~d--ADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~ 145 (372)
T KOG2711|consen 99 LVEAAKD--ADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVG 145 (372)
T ss_pred HHHHhcc--CCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceecc
Confidence 9999886 999999999999888887765 33433 4466665544
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.71 Score=44.89 Aligned_cols=86 Identities=8% Similarity=0.016 Sum_probs=54.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCC-cEEEEEEcCCHH--HHHHHHHHcCCCCCCccc-CC-HHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPN-AVLSAVASRSLE--KATNFAKANNFPPDAKVY-GS-YEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~-~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~-~~-~~e~l~~~~~D~V~i~~~~ 83 (362)
.||.|||.|..|..-+..+.+..+ ++|. ++|.... ..+.+. + |+. ++ .. -.+.+. ++|+|+++.--
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~-~~D~~~~~~~~~~l~-~-g~~----~~~g~~~~~~~~--~~d~vV~SpgI 78 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVK-VIDTRETPPGQEQLP-E-DVE----LHSGGWNLEWLL--EADLVVTNPGI 78 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEE-EEeCCCCchhHHHhh-c-CCE----EEeCCCChHHhc--cCCEEEECCCC
Confidence 579999999999988777776654 7766 5775432 122232 2 542 32 21 223343 58988776554
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~E 103 (362)
+...+.+.+|.++|++|+.|
T Consensus 79 ~~~~p~~~~a~~~gi~i~~~ 98 (438)
T PRK04663 79 ALATPEIQQVLAAGIPVVGD 98 (438)
T ss_pred CCCCHHHHHHHHCCCcEEEH
Confidence 55556788888999988854
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.77 Score=45.27 Aligned_cols=45 Identities=16% Similarity=0.015 Sum_probs=36.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
.-||+|+|+|.+|...+..++.. +.+ |-++|+++++.+ .++++|.
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~l-GA~-V~a~D~~~~rle-~aeslGA 209 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSL-GAI-VRAFDTRPEVAE-QVESMGA 209 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCE-EEEEeCCHHHHH-HHHHcCC
Confidence 57999999999999999988888 566 558999988766 4556774
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.3 Score=39.64 Aligned_cols=88 Identities=11% Similarity=0.118 Sum_probs=58.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcE-EEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~-vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
-++.|.|+|.+|...+..++.. ++. +++ .++++++.+ +++++|... .+...-+..+...++|+|+.++....+.
T Consensus 99 ~~vlI~g~g~vg~~~i~~a~~~-g~~~vi~-~~~~~~~~~-~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~~~~~~~~~ 173 (277)
T cd08255 99 ERVAVVGLGLVGLLAAQLAKAA-GAREVVG-VDPDAARRE-LAEALGPAD--PVAADTADEIGGRGADVVIEASGSPSAL 173 (277)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCcEEE-ECCCHHHHH-HHHHcCCCc--cccccchhhhcCCCCCEEEEccCChHHH
Confidence 4688889999998888887776 566 654 466777766 777777211 1222222233445799999988777777
Q ss_pred HHHHHHHHcCCeEE
Q 018020 88 KWAISVAQKKKHLL 101 (362)
Q Consensus 88 ~~~~~al~~gk~V~ 101 (362)
+.+..+++.+-.++
T Consensus 174 ~~~~~~l~~~g~~~ 187 (277)
T cd08255 174 ETALRLLRDRGRVV 187 (277)
T ss_pred HHHHHHhcCCcEEE
Confidence 77888887764443
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.7 Score=37.45 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=38.5
Q ss_pred ceeEEEEEec--cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC
Q 018020 7 AAIRFGIIGA--ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP 56 (362)
Q Consensus 7 ~~~~v~iiG~--G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~ 56 (362)
.+-+|.|.|| |.||...+..+.+. ++.++| +.|..++...++.++|+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~-G~~V~A-taR~~e~M~~L~~~~gl~ 55 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARN-GYLVYA-TARRLEPMAQLAIQFGLK 55 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhC-CeEEEE-EccccchHhhHHHhhCCe
Confidence 4678999999 67888888888766 788774 668889999999888864
|
|
| >cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=92.41 E-value=4.7 Score=37.61 Aligned_cols=87 Identities=15% Similarity=0.069 Sum_probs=57.7
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCH-HHH---hcCCCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSY-EAL---LDDKDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~-~e~---l~~~~~D~V~i~~ 81 (362)
+|.|.|+|..|...+..++.. ++.++.+.++++++. .+++++|.. .++ .++ +++ .....+|+|+-++
T Consensus 177 ~vlI~g~g~vG~~~~~~a~~~-G~~~v~~~~~~~~~~-~~~~~~g~~---~v~~~~~~~~~~~~~~~~~~~~vdvvld~~ 251 (350)
T cd08256 177 VVVLAGAGPLGLGMIGAARLK-NPKKLIVLDLKDERL-ALARKFGAD---VVLNPPEVDVVEKIKELTGGYGCDIYIEAT 251 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCHHHH-HHHHHcCCc---EEecCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 567788899998888888877 566566677877765 456677752 122 122 233 2334699999988
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
........+..+++.+-.++
T Consensus 252 g~~~~~~~~~~~l~~~G~~v 271 (350)
T cd08256 252 GHPSAVEQGLNMIRKLGRFV 271 (350)
T ss_pred CChHHHHHHHHHhhcCCEEE
Confidence 86555666778887775543
|
This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, |
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.86 Score=44.43 Aligned_cols=89 Identities=8% Similarity=0.032 Sum_probs=56.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHH-cCCCCCCcccC--CHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKA-NNFPPDAKVYG--SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~-~~~~~~~~~~~--~~~e~l~~~~~D~V~i~~ 81 (362)
..--|+|||.|..|...++.|.+. +++|. ++|.... ..+.+.++ .|++ ++. .-.+.+. ++|+|+++.
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~-G~~v~-~~D~~~~~~~~~~l~~~~~g~~----~~~~~~~~~~~~--~~d~vV~sp 76 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQ-GIPFA-VMDSREQPPGLDTLAREFPDVE----LRCGGFDCELLV--QASEIIISP 76 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhC-CCeEE-EEeCCCCchhHHHHHhhcCCcE----EEeCCCChHHhc--CCCEEEECC
Confidence 355689999999999988888777 67765 5775432 22334333 2543 321 1233444 489887765
Q ss_pred CCcccHHHHHHHHHcCCeEEEe
Q 018020 82 PTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~E 103 (362)
--....+.+.+|.++|++|+.|
T Consensus 77 ~i~~~~p~~~~a~~~~i~i~~~ 98 (448)
T PRK03803 77 GLALDTPALRAAAAMGIEVIGD 98 (448)
T ss_pred CCCCCCHHHHHHHHCCCcEEEH
Confidence 4445556777788889888853
|
|
| >cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.33 E-value=6.5 Score=36.63 Aligned_cols=87 Identities=18% Similarity=0.096 Sum_probs=57.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----C-HHHH---hcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----S-YEAL---LDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~-~~e~---l~~~~~D~V~i~ 80 (362)
=+|.|.|+|..|......++.. +++.+.+.++++++.+.+ +++|+. .+++ + .+++ ... ++|+|+-+
T Consensus 177 ~~vlI~g~g~vg~~~~~~a~~~-G~~~v~~~~~~~~~~~~~-~~~g~~---~~~~~~~~~~~~~~~~~~~~-~~d~vid~ 250 (350)
T cd08240 177 EPVVIIGAGGLGLMALALLKAL-GPANIIVVDIDEAKLEAA-KAAGAD---VVVNGSDPDAAKRIIKAAGG-GVDAVIDF 250 (350)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHH-HHhCCc---EEecCCCccHHHHHHHHhCC-CCcEEEEC
Confidence 3678889999998888888777 664344556677766655 667752 2221 1 1222 233 69999988
Q ss_pred CCCcccHHHHHHHHHcCCeEE
Q 018020 81 LPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~ 101 (362)
+......+.+.+++..+-.++
T Consensus 251 ~g~~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 251 VNNSATASLAFDILAKGGKLV 271 (350)
T ss_pred CCCHHHHHHHHHHhhcCCeEE
Confidence 876667788888887775554
|
6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.3 Score=39.17 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=26.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
||.|||+|..|...++.|... ++.-+-++|.+.
T Consensus 1 kVlvvG~GGlG~eilk~La~~-Gvg~i~ivD~D~ 33 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALM-GFGQIHVIDMDT 33 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 689999999999999999776 554455777644
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.4 Score=44.10 Aligned_cols=70 Identities=21% Similarity=0.177 Sum_probs=45.9
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-C--CCCcc--cCCHHHHhcCCCCcEEEEcCCC
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-P--PDAKV--YGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~--~~~~~--~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|+|||+|.+|...+..+...+-+.-+.++|+++++++..+.+.. . . ..+.+ .++++ .++ +.|+|+++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~--~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAA--DADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhC--CCCEEEEcCCC
Confidence 58999999999888777666544445589999888776665432 1 0 11122 24554 444 48999987654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >KOG1255 consensus Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.25 E-value=0.57 Score=40.68 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=79.4
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-||.+=|+ |.-|.+|.....+- +.++|+-..+...- ...+|.| +|.|..|..++.+.|+-+|..|++.
T Consensus 37 k~TkVi~QGfTGKqgTFHs~q~~eY-gTk~VgG~~pkK~G----t~HLG~P----VF~sV~eA~~~t~a~AsvIyVPpp~ 107 (329)
T KOG1255|consen 37 KDTKVICQGFTGKQGTFHSQQALEY-GTKVVGGVNPKKGG----TTHLGLP----VFNSVAEAKKETGADASVIYVPPPF 107 (329)
T ss_pred CCceEEEecccCCccceeHHHHHHh-CCceeeccCCCcCc----ccccCch----hhhhHHHHHHhhCCCceEEEeCChh
Confidence 4567888785 66677888776655 67888887765421 2345765 8999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.+..+.+++++-.+.++---=...-.+.-++.......
T Consensus 108 Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q 145 (329)
T KOG1255|consen 108 AAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQ 145 (329)
T ss_pred HHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhc
Confidence 99999999999988664322233455666666655443
|
|
| >PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.52 Score=41.80 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=58.9
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
++++++++|+|--+.+. .+.+.+.+ -+|++-|...+....++++++-+.||+|++=|+.+.++++..-.++.....
T Consensus 73 L~~vk~~~GlpvvTeV~~~~~~~~v~~--~~DilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~~~aaeyi~~~ 150 (264)
T PRK05198 73 LQEVKETFGVPVLTDVHEPEQAAPVAE--VVDVLQIPAFLCRQTDLLVAAAKTGKVVNIKKGQFLAPWDMKNVVDKVREA 150 (264)
T ss_pred HHHHHHHHCCceEEEeCCHHHHHHHHh--hCcEEEECchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc
Confidence 56778899986111111 22333334 399999999999999999999999999999999999999887777766655
Q ss_pred C
Q 018020 124 G 124 (362)
Q Consensus 124 ~ 124 (362)
|
T Consensus 151 G 151 (264)
T PRK05198 151 G 151 (264)
T ss_pred C
Confidence 4
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.22 E-value=3.1 Score=38.71 Aligned_cols=92 Identities=17% Similarity=0.127 Sum_probs=59.4
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC--HH----HHhcCCCCcEEEEcC
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS--YE----ALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~~----e~l~~~~~D~V~i~~ 81 (362)
-+|.|.| +|..|....+.++.. +..++++..++ ++.+ +++++|-.. +.-|.+ +. ++.....+|+|+-+.
T Consensus 144 ~~VLV~gaaGgVG~~aiQlAk~~-G~~~v~~~~s~-~k~~-~~~~lGAd~-vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 144 ETVLVHGAAGGVGSAAIQLAKAL-GATVVAVVSSS-EKLE-LLKELGADH-VINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CEEEEecCCchHHHHHHHHHHHc-CCcEEEEecCH-HHHH-HHHhcCCCE-EEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 4688999 688898888888888 44666666544 5555 778877421 111222 33 333334799999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeC
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EK 104 (362)
-.......+......|+-|.+--
T Consensus 220 G~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 220 GGDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred CHHHHHHHHHHhccCCEEEEEec
Confidence 99888885554445556666543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.19 E-value=3 Score=37.47 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=29.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN 53 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~ 53 (362)
.+-||.|||.|-- ..++.+.++|. +++ +||.|++-. +++++|
T Consensus 72 ~pk~VLIiGGGDG--g~~REvLkh~~-~v~-mVeID~~Vv-~~~k~~ 113 (262)
T PRK00536 72 ELKEVLIVDGFDL--ELAHQLFKYDT-HVD-FVQADEKIL-DSFISF 113 (262)
T ss_pred CCCeEEEEcCCch--HHHHHHHCcCC-eeE-EEECCHHHH-HHHHHH
Confidence 5789999999973 35566667775 655 899998644 455554
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.93 Score=45.60 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=27.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
+..||+|||+|..|...++.|... ++.=+.++|.
T Consensus 337 ~~~kVLIvGaGGLGs~VA~~La~~-GVg~ItlVD~ 370 (664)
T TIGR01381 337 SQLKVLLLGAGTLGCNVARCLIGW-GVRHITFVDN 370 (664)
T ss_pred hcCeEEEECCcHHHHHHHHHHHHc-CCCeEEEEcC
Confidence 367999999999999999999877 5555557775
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=3.7 Score=38.46 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=57.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~---~~~~D~V~i~~ 81 (362)
=+|.|.|+ |.+|...++.++.. +++++++ ++++++.+.+.+++|.. .+.-+. ++.+.+. ...+|+|+-++
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~-~~~~~k~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v 236 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH-GCYVVGS-AGSSQKVDLLKNKLGFD-EAFNYKEEPDLDAALKRYFPEGIDIYFDNV 236 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEE-cCCHHHHHHHHHhcCCC-EEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence 36899998 88998888887766 6787654 56667766665577753 111121 3444332 23689999888
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
.. .....+..+++.|-.+.
T Consensus 237 G~-~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 237 GG-DMLDAALLNMKIHGRIA 255 (348)
T ss_pred CH-HHHHHHHHHhccCCEEE
Confidence 75 35666777777764443
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.98 E-value=0.87 Score=44.51 Aligned_cols=86 Identities=14% Similarity=0.091 Sum_probs=55.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-HHHHH---HHHcCCCCCCcccC--CHH-----HHhcCCCCcEEE
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-KATNF---AKANNFPPDAKVYG--SYE-----ALLDDKDIDAVY 78 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~~~~~---~~~~~~~~~~~~~~--~~~-----e~l~~~~~D~V~ 78 (362)
||.|||+|..|...+..+.+. +.+|. ++|+... ..+.. -+..|+. ++. +.+ +.+. +.|+|+
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~-~~D~~~~~~~~~~~~~l~~~gi~----~~~g~~~~~~~~~~~~~--~~d~vv 73 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVV-VSDRNDSPELLERQQELEQEGIT----VKLGKPLELESFQPWLD--QPDLVV 73 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEE-EECCCCchhhHHHHHHHHHcCCE----EEECCccchhhhhHHhh--cCCEEE
Confidence 689999999999877777766 67755 6776432 22211 1233542 321 111 3444 489998
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEe
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~E 103 (362)
++..-+...+.+.+|.+.|.+|+.+
T Consensus 74 ~s~gi~~~~~~~~~a~~~~i~v~~~ 98 (459)
T PRK02705 74 VSPGIPWDHPTLVELRERGIEVIGE 98 (459)
T ss_pred ECCCCCCCCHHHHHHHHcCCcEEEh
Confidence 8655556667888888899888754
|
|
| >COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.67 Score=42.38 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=52.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-----------CHHHHHHHHHHcCCC---CCCcccC-CHHHHhcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-----------SLEKATNFAKANNFP---PDAKVYG-SYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-----------~~~~~~~~~~~~~~~---~~~~~~~-~~~e~l~~~ 72 (362)
+|||.+.|+-.++...+..|...+ ++|++|+.. ...-.+.+|.++|+| |. +.-+ .+.+.+++-
T Consensus 1 ~mkivF~GTp~fa~~~L~~L~~~~-~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~-~l~~~e~~~~l~~l 78 (307)
T COG0223 1 MMRIVFFGTPEFAVPSLEALIEAG-HEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPE-KLNDPEFLEELAAL 78 (307)
T ss_pred CcEEEEEcCchhhHHHHHHHHhCC-CceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccc-cCCcHHHHHHHhcc
Confidence 489999999999999999998875 999999953 112356788888875 11 1111 266667777
Q ss_pred CCcEEEEcC
Q 018020 73 DIDAVYLPL 81 (362)
Q Consensus 73 ~~D~V~i~~ 81 (362)
++|+++++.
T Consensus 79 ~~D~ivvva 87 (307)
T COG0223 79 DPDLIVVVA 87 (307)
T ss_pred CCCEEEEEe
Confidence 899998864
|
|
| >cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=91.86 E-value=6.9 Score=35.53 Aligned_cols=87 Identities=17% Similarity=0.153 Sum_probs=58.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcE-EEEEEcCCHHHHHHHHHHcCCCCCCcccC----C----HHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVYG----S----YEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~-vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~----~~e~l~~~~~D~V~i 79 (362)
-+|.|.|.|.+|...+..++.. +++ +++ .++++++.+ +.+++|.. .++. + +.++.....+|+++-
T Consensus 131 ~~vlI~g~g~vg~~~~~la~~~-g~~~v~~-~~~~~~~~~-~~~~~g~~---~~~~~~~~~~~~~l~~~~~~~~vd~vld 204 (312)
T cd08269 131 KTVAVIGAGFIGLLFLQLAAAA-GARRVIA-IDRRPARLA-LARELGAT---EVVTDDSEAIVERVRELTGGAGADVVIE 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEE-ECCCHHHHH-HHHHhCCc---eEecCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 4688889998998888888777 677 554 555666555 55667753 1221 2 223333357999999
Q ss_pred cCCCcccHHHHHHHHHcCCeEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~ 101 (362)
++........+.++++.+-.++
T Consensus 205 ~~g~~~~~~~~~~~l~~~g~~~ 226 (312)
T cd08269 205 AVGHQWPLDLAGELVAERGRLV 226 (312)
T ss_pred CCCCHHHHHHHHHHhccCCEEE
Confidence 8877667777888887764443
|
The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=91.84 E-value=2.7 Score=39.96 Aligned_cols=91 Identities=10% Similarity=0.025 Sum_probs=58.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHHHHhc---CCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYG----SYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~e~l~---~~~~D~V~i~ 80 (362)
=+|.|+|+|.+|...+..++.. ++ +++ ++++++++.+. ++++|... +.-+. ++.+.+. ...+|+|+-+
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~-G~~~Vi-~~~~~~~r~~~-a~~~Ga~~-~i~~~~~~~~~~~~v~~~~~~g~dvvid~ 275 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARAR-GASKII-GVDINPEKFEK-GKEMGITD-FINPKDSDKPVHERIREMTGGGVDYSFEC 275 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCcEE-EEcCChHHHHH-HHHcCCcE-EEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 3789999999999888888877 56 455 56777776554 46677531 00111 1323221 1269999999
Q ss_pred CCCcccHHHHHHHHHc--CCeEEEe
Q 018020 81 LPTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~--gk~V~~E 103 (362)
+........+..+++. |+-|++-
T Consensus 276 ~G~~~~~~~a~~~~~~g~G~~v~~G 300 (381)
T PLN02740 276 AGNVEVLREAFLSTHDGWGLTVLLG 300 (381)
T ss_pred CCChHHHHHHHHhhhcCCCEEEEEc
Confidence 9877777777777766 5555543
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=91.83 E-value=0.4 Score=44.28 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=41.9
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCH--HHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSL--EKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~--~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
|||+|||+ |..|...+..+...+.. +|+ ++|+++ ++++..+.+ .+........+++++ +.+ .|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~-lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~--aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEIN-LISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG--SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC--CCEE
Confidence 58999998 99999988888776543 555 567744 433322211 111111112346665 554 8999
Q ss_pred EEcCC
Q 018020 78 YLPLP 82 (362)
Q Consensus 78 ~i~~~ 82 (362)
+++..
T Consensus 77 iitag 81 (309)
T cd05294 77 IITAG 81 (309)
T ss_pred EEecC
Confidence 98754
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.81 E-value=1.5 Score=43.32 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=35.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
.-|+.|+|+|.+|...+..++.+ +.. +-++|++.++.+ .++++|.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~l-GA~-V~v~d~~~~rle-~a~~lGa 208 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSL-GAI-VRAFDTRPEVKE-QVQSMGA 208 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHH-HHHHcCC
Confidence 46999999999999999988887 566 557899888655 4455664
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=2.4 Score=36.25 Aligned_cols=72 Identities=11% Similarity=0.047 Sum_probs=41.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcc-cCCHHHHhcC--CCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNF---AKANNFPPDAKV-YGSYEALLDD--KDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~e~l~~--~~~D~V~i~ 80 (362)
.-+|.-+|+|. |..-...++.. +...++ .+|.+++..+.. .+.+++...+.+ ..|..+.+.. ..+|+|++.
T Consensus 41 ~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~-avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 41 GDMILDIGCGT-GSVTVEASLLVGETGKVY-AVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred cCEEEEeCCcC-CHHHHHHHHHhCCCCEEE-EEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 35789999987 55444444433 345655 578888766543 334553222222 3466665432 468999985
Q ss_pred C
Q 018020 81 L 81 (362)
Q Consensus 81 ~ 81 (362)
.
T Consensus 119 ~ 119 (198)
T PRK00377 119 G 119 (198)
T ss_pred C
Confidence 4
|
|
| >PRK12854 glucose-6-phosphate 1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=0.36 Score=47.04 Aligned_cols=48 Identities=23% Similarity=0.398 Sum_probs=41.3
Q ss_pred EEEEcCCCcccHHHHHHHHHcC----CeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 76 AVYLPLPTSMHVKWAISVAQKK----KHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~g----k~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
+.++++||..-..++...-++| .-|.+|||++.|++.|++|.+...+.
T Consensus 121 ifYLA~PP~~f~~i~~~l~~~~l~~~~RiViEKPFG~Dl~SA~~Ln~~l~~~ 172 (484)
T PRK12854 121 VHYLAVPPSAFLDVTRALGEAGLAEGSRVVMEKPFGTDLASAEALNAAVHEV 172 (484)
T ss_pred EEEEecCHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7889999998888887766666 57999999999999999999977653
|
|
| >PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.75 E-value=2 Score=40.06 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=60.4
Q ss_pred HHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
..+.++++|++--+.+ ..+++.+.+ - +|++-|++.+-...++...+.+.||+|++-++++.++++.....+.....
T Consensus 149 L~~~~~~~Gl~v~tev~d~~~~~~l~~-~-vd~lqIgAr~~~N~~LL~~va~~~kPViLk~G~~~ti~E~l~A~e~i~~~ 226 (335)
T PRK08673 149 LAEAREETGLPIVTEVMDPRDVELVAE-Y-VDILQIGARNMQNFDLLKEVGKTNKPVLLKRGMSATIEEWLMAAEYILAE 226 (335)
T ss_pred HHHHHHHcCCcEEEeeCCHHHHHHHHH-h-CCeEEECcccccCHHHHHHHHcCCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 4566778888611111 133333433 3 99999999999999999999999999999999999999999988888765
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|-
T Consensus 227 GN 228 (335)
T PRK08673 227 GN 228 (335)
T ss_pred CC
Confidence 43
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.91 Score=42.49 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=28.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKA 46 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~ 46 (362)
+||.|.|+ |++|...+..|.+..+.+|+++ +++.++.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~-~r~~~~~ 39 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGM-DMQTDRL 39 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEE-eCcHHHH
Confidence 57999997 9999999999876656888865 5655443
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=91.61 E-value=1.7 Score=40.40 Aligned_cols=78 Identities=12% Similarity=0.237 Sum_probs=60.9
Q ss_pred HHHHHHHcCCCCCCcccCCHH--HHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVYGSYE--ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~--e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
..+.++++|++--+..+ |.+ ++|++-++|+.=|++.+-.+.+++..+.+.||+|++=..+ .+++|.++.++..++.
T Consensus 81 L~~~~~~~Gi~~~stpf-d~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm-atl~Ei~~Av~~i~~~ 158 (329)
T TIGR03569 81 LKEYCESKGIEFLSTPF-DLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM-ATLEEIEAAVGVLRDA 158 (329)
T ss_pred HHHHHHHhCCcEEEEeC-CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHHHc
Confidence 45567778875111112 222 4566667999999999999999999999999999998888 5999999999999887
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|.
T Consensus 159 G~ 160 (329)
T TIGR03569 159 GT 160 (329)
T ss_pred CC
Confidence 64
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=91.58 E-value=1.2 Score=42.34 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=31.7
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATN 48 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~ 48 (362)
-++|||.|.|+ |++|...++.|.+..+.+|+++ |++.++...
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l-~r~~~~~~~ 54 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPHKVLAL-DVYNDKIKH 54 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEE-ecCchhhhh
Confidence 46789999995 9999999999987755787765 555544443
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.1 Score=42.97 Aligned_cols=122 Identities=12% Similarity=0.067 Sum_probs=67.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+..||.|||+|..|...+..|... ++.=+.++|.+.-....+.+++ |.+ ++. ...+.|..-.+++-+.
T Consensus 41 ~~~~VlviG~GGlGs~va~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~---Ka~-~a~~~l~~~np~v~i~ 115 (392)
T PRK07878 41 KNARVLVIGAGGLGSPTLLYLAAA-GVGTLGIVEFDVVDESNLQRQVIHGQSDVGRS---KAQ-SARDSIVEINPLVNVR 115 (392)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCCEecCcccccccccChhcCCCh---HHH-HHHHHHHHhCCCcEEE
Confidence 357899999999999999999876 5555668886542222222221 211 111 1222232223333222
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHN 136 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~ 136 (362)
+.+...-.+-+...+ .+..++++ .+.+.+.-..+.++|.++++++..+....+.
T Consensus 116 ~~~~~i~~~~~~~~~-~~~D~Vvd--~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~ 169 (392)
T PRK07878 116 LHEFRLDPSNAVELF-SQYDLILD--GTDNFATRYLVNDAAVLAGKPYVWGSIYRFE 169 (392)
T ss_pred EEeccCChhHHHHHH-hcCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEEeccCE
Confidence 222111122223333 35567775 3456766666778899999998877666553
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.43 E-value=3.3 Score=39.03 Aligned_cols=87 Identities=10% Similarity=0.079 Sum_probs=58.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc--C----CHHH----HhcCCCCcEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY--G----SYEA----LLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~----~~~e----~l~~~~~D~V 77 (362)
-+|.|+|+|.+|...+..++.. ++ .++ +.++++++.+. ++++|.. .++ . ++.+ +... .+|+|
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~-G~~~vi-~~~~~~~~~~~-~~~~Ga~---~~i~~~~~~~~~~~~v~~~~~~-~~d~v 261 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIR-GASRII-GVDLNPSKFEQ-AKKFGVT---EFVNPKDHDKPVQEVIAEMTGG-GVDYS 261 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEE-EEcCCHHHHHH-HHHcCCc---eEEcccccchhHHHHHHHHhCC-CCCEE
Confidence 4789999999999888888776 56 555 55677776664 4667742 122 1 2222 2232 69999
Q ss_pred EEcCCCcccHHHHHHHHHcC--CeEEE
Q 018020 78 YLPLPTSMHVKWAISVAQKK--KHLLM 102 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~g--k~V~~ 102 (362)
+-++........+..+++.| +-|++
T Consensus 262 id~~G~~~~~~~~~~~~~~~~g~~v~~ 288 (369)
T cd08301 262 FECTGNIDAMISAFECVHDGWGVTVLL 288 (369)
T ss_pred EECCCChHHHHHHHHHhhcCCCEEEEE
Confidence 99988777777778888774 44444
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.79 Score=40.51 Aligned_cols=76 Identities=11% Similarity=0.131 Sum_probs=57.4
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.+++++++|+|--+.+. .+.+.+.+ -+|++-|...+....++++++-+.||+|++=|+.+.++++..-.++.....
T Consensus 65 L~~vk~~~glpvvTeV~~~~~~~~vae--~vDilQIgArn~rn~~LL~a~g~t~kpV~lKrG~~~t~~e~l~aaeyi~~~ 142 (258)
T TIGR01362 65 LQKVKEEFGVPILTDVHESSQCEPVAE--VVDIIQIPAFLCRQTDLLVAAAKTGRIVNVKKGQFLSPWDMKNVVEKVLST 142 (258)
T ss_pred HHHHHHHhCCceEEEeCCHHHHHHHHh--hCcEEEeCchhcchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHHHc
Confidence 56778899986111111 22233333 399999999999999999999999999999999999999877666655544
|
In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide. |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=91.38 E-value=8.9 Score=35.54 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=57.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHH--HHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SYE--ALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~--e~l~~~~~D~V~i~~~~~ 84 (362)
-++.|.|+|.+|...+..++.. +.+++. +++++++.+.+ .++|.. .++. +.+ +.+ ...+|+|+-+++..
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~-G~~v~~-~~~~~~~~~~~-~~~g~~---~vi~~~~~~~~~~~-~~~~d~v~~~~g~~ 243 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKAL-GAEVTA-FSRSPSKKEDA-LKLGAD---EFIATKDPEAMKKA-AGSLDLIIDTVSAS 243 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCeEEE-EcCCHHHHHHH-HHcCCc---EEecCcchhhhhhc-cCCceEEEECCCCc
Confidence 4688899999998888777776 677664 55666666554 567643 2222 111 112 24699999999887
Q ss_pred ccHHHHHHHHHcCCe-EEEe
Q 018020 85 MHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~-V~~E 103 (362)
...+.+..+++.+-+ +.+-
T Consensus 244 ~~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 244 HDLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred chHHHHHHHhcCCCEEEEEe
Confidence 667777888876544 4443
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=91.38 E-value=4.8 Score=34.29 Aligned_cols=111 Identities=21% Similarity=0.219 Sum_probs=65.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCc-ccCCHHHHh----cCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAK-VYGSYEALL----DDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~-~~~~~~e~l----~~~~~D~V~i 79 (362)
.-++.=||||. |.......+..|+..++| +|.+.+.++.. +++.++. ++. +..|..+++ .+..+|.|++
T Consensus 17 ~~~ilDiGcG~-G~~~~~la~~~p~~~v~g-vD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 17 APLHLEIGCGK-GRFLIDMAKQNPDKNFLG-IEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CceEEEeCCCc-cHHHHHHHHhCCCCCEEE-EEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45788999998 666666666788888774 67777655443 2334442 222 346776654 3346999998
Q ss_pred cCCCcc----c----------HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 80 PLPTSM----H----------VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 80 ~~~~~~----h----------~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.-|.+. | ...+.+.|+.|--+++. +.+..-+.++.+...+.+
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~---td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK---TDNEPLFEDMLKVLSEND 149 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHhCC
Confidence 766542 2 22344555666555542 234445556666666555
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=91.31 E-value=0.62 Score=42.98 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=41.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCccc---C--CHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVY---G--SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~---~--~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+ |.+|...+..+...+-+.-+.++|++ +++..+-+.. ....+.+. . |+.+-++ +.|+|+++.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~--daDivvita 76 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALK--GADVVVIPA 76 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcC--CCCEEEEeC
Confidence 58999999 99999887777655444445588887 3333222221 10112333 2 2234444 489999864
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
-.
T Consensus 77 G~ 78 (310)
T cd01337 77 GV 78 (310)
T ss_pred CC
Confidence 43
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.34 Score=44.42 Aligned_cols=69 Identities=28% Similarity=0.368 Sum_probs=43.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcC--CC---CCCcccCC--HHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANN--FP---PDAKVYGS--YEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~--~~---~~~~~~~~--~~e~l~~~~~D~V~i~ 80 (362)
+||+|||+|.+|...+..+....-. +++ ++|+.++.++-.+.++. .+ ....++.+ ++++ .+.|+|+|+
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~-LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~---~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELV-LIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDL---KGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEE-EEEcccccccchhcchhhcchhccCceEEecCCChhhh---cCCCEEEEe
Confidence 4899999999999888877444323 544 88988666554444321 00 11234443 4433 358999997
Q ss_pred C
Q 018020 81 L 81 (362)
Q Consensus 81 ~ 81 (362)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 6
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.20 E-value=2 Score=40.73 Aligned_cols=109 Identities=20% Similarity=0.213 Sum_probs=68.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH----------H-------HHHHHHHHcCCCCCCcccCCHHHHh
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL----------E-------KATNFAKANNFPPDAKVYGSYEALL 69 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~----------~-------~~~~~~~~~~~~~~~~~~~~~~e~l 69 (362)
+-.||+|=|.|+.|...+..+... +.+|+++.|..- + +.+.+.+.++. ... +-++++
T Consensus 206 ~G~rVaVQG~GNVg~~aa~~l~~~-GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga----~~i-~~~e~~ 279 (411)
T COG0334 206 EGARVAVQGFGNVGQYAAEKLHEL-GAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGA----EYI-TNEELL 279 (411)
T ss_pred CCCEEEEECccHHHHHHHHHHHHc-CCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCc----eEc-cccccc
Confidence 357999999999999999988877 999999888643 1 23333333331 223 337787
Q ss_pred cCCCCcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 70 DDKDIDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 70 ~~~~~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.. ++|+.+=| +.+.-+..-+. .|++. +++|--=..+..+|.+++. +.|+.+.
T Consensus 280 ~~-~cDIl~PcA~~n~I~~~na~-~l~ak--~V~EgAN~P~t~eA~~i~~---erGIl~~ 332 (411)
T COG0334 280 EV-DCDILIPCALENVITEDNAD-QLKAK--IVVEGANGPTTPEADEILL---ERGILVV 332 (411)
T ss_pred cc-cCcEEcccccccccchhhHH-Hhhhc--EEEeccCCCCCHHHHHHHH---HCCCEEc
Confidence 75 79988854 44444443333 33333 8888633334456666555 7776653
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.4 Score=43.57 Aligned_cols=88 Identities=19% Similarity=0.153 Sum_probs=53.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHHcCCCCCCccc-C-CHHHHhcCCCCcEEEEcCCC-
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKANNFPPDAKVY-G-SYEALLDDKDIDAVYLPLPT- 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~-~-~~~e~l~~~~~D~V~i~~~~- 83 (362)
-+|.|+|.|..|...++.|++. +.+|. ++|.... ..+.+.+ .+. ++..+ . ...+.++ ++|+|+++.--
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~-G~~v~-~~D~~~~~~~~~~L~~-~~~--~~~~~~g~~~~~~~~--~~d~vv~sp~I~ 80 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARH-GARLR-VADTREAPPNLAALRA-ELP--DAEFVGGPFDPALLD--GVDLVALSPGLS 80 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHC-CCEEE-EEcCCCCchhHHHHHh-hcC--CcEEEeCCCchhHhc--CCCEEEECCCCC
Confidence 4799999999998888888877 67766 5775432 2233322 221 11222 2 2334455 48988886322
Q ss_pred ccc---HHHHHHHHHcCCeEEEe
Q 018020 84 SMH---VKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h---~~~~~~al~~gk~V~~E 103 (362)
..| .+.+.+|-+.|++|+.+
T Consensus 81 ~~~~~~~~~~~~a~~~~i~v~~~ 103 (498)
T PRK02006 81 PLEAALAPLVAAARERGIPVWGE 103 (498)
T ss_pred CcccccCHHHHHHHHCCCcEEEH
Confidence 223 47777888888888854
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.02 E-value=1.2 Score=41.98 Aligned_cols=121 Identities=11% Similarity=0.046 Sum_probs=62.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-------HcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-------ANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+..||.|||+|..|...+..|... ++.=+.++|.+.-....+.+ ..|.+ ++. ...+-|..-.+++-+.
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~-Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~---Ka~-~a~~~l~~~np~v~v~ 101 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGA-GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQP---KAE-SAREAMLALNPDVKVT 101 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCEEcccccccCcccChhHCCCh---HHH-HHHHHHHHHCCCcEEE
Confidence 356999999999999999998766 56556677775421111111 11221 111 1222222223333333
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+.+.....+-+...+ .+-.|+++ .+.+.+.-.-+.++|.++++++..+....|
T Consensus 102 ~~~~~i~~~~~~~~~-~~~DvVvd--~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 102 VSVRRLTWSNALDEL-RDADVILD--GSDNFDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred EEEeecCHHHHHHHH-hCCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 322222222223333 34456654 234454444566777888887776654443
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.00 E-value=3.6 Score=37.41 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=46.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC----CC---cccCCHHHHhcC-C-CCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP----DA---KVYGSYEALLDD-K-DIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~----~~---~~~~~~~e~l~~-~-~~D~V~i 79 (362)
-||.|||.|- | ..++.+.+++..+-+-+|+.+++-.+-..+.+..+. +. ...+|--+.+.+ + ..|+|++
T Consensus 78 k~VLiiGgGd-G-~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGD-G-GTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCc-c-HHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 3999999985 3 456666677777777799999876665555554432 11 124666677664 2 4899887
Q ss_pred c
Q 018020 80 P 80 (362)
Q Consensus 80 ~ 80 (362)
=
T Consensus 156 D 156 (282)
T COG0421 156 D 156 (282)
T ss_pred c
Confidence 3
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=90.97 E-value=0.62 Score=43.31 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=46.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhc-CCCCcEEEEcC--CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLD-DKDIDAVYLPL--PT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~-~~~~D~V~i~~--~~ 83 (362)
.-||.|||+|-||.-.+..|.+. ++.-+.|++|+.++ .. |.+.. +.+. ..+.|+|+.+| ..
T Consensus 174 ~k~vLvIGaGem~~l~a~~L~~~-g~~~i~v~nRt~~~-----~~---------~~~~~~~~~~~~~~~DvVIs~t~~Ta 238 (338)
T PRK00676 174 KASLLFIGYSEINRKVAYYLQRQ-GYSRITFCSRQQLT-----LP---------YRTVVREELSFQDPYDVIFFGSSESA 238 (338)
T ss_pred CCEEEEEcccHHHHHHHHHHHHc-CCCEEEEEcCCccc-----cc---------hhhhhhhhhhcccCCCEEEEcCCcCC
Confidence 46899999999999999999887 54446699998742 11 22221 1111 24689999974 34
Q ss_pred cccHHHHHHHHH
Q 018020 84 SMHVKWAISVAQ 95 (362)
Q Consensus 84 ~~h~~~~~~al~ 95 (362)
..|+.+...-++
T Consensus 239 s~~p~i~~~~~~ 250 (338)
T PRK00676 239 YAFPHLSWESLA 250 (338)
T ss_pred CCCceeeHHHHh
Confidence 445544444444
|
|
| >COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.94 E-value=3.2 Score=38.68 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=73.7
Q ss_pred eeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--------CCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--------PPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
+|||++|..-..-+ ..-..+...|++++++......+ +-...+++.- .|.-.-.+.+++++.....-+|+
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~-a~~~~~~~~PDVi~ld~emp~mdgl~~l~~im~~~p~pVim 79 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGRE-AIDKVKKLKPDVITLDVEMPVMDGLEALRKIMRLRPLPVIM 79 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHH-HHHHHHhcCCCEEEEecccccccHHHHHHHHhcCCCCcEEE
Confidence 47999999865544 45566778888999988865444 4444555431 01112234555667777788999
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEeCCCC---CCHHHHHH
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLMEKPMA---LNVAEFDV 115 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~EKP~~---~~~~~~~~ 115 (362)
+++-+..+.++..+|++.|.-=++.||.. ..+.+..+
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~ 119 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAE 119 (350)
T ss_pred EeccccccHHHHHHHHhcCcceeecCCCcccccchHHHHH
Confidence 99999999999999999996667889974 34444433
|
|
| >PRK08462 biotin carboxylase; Validated | Back alignment and domain information |
|---|
Probab=90.93 E-value=2.1 Score=41.70 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=60.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH--HHHHHHHc-CCCCC--CcccCCHHHHhc---CCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK--ATNFAKAN-NFPPD--AKVYGSYEALLD---DKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--~~~~~~~~-~~~~~--~~~~~~~~e~l~---~~~~D~V~i 79 (362)
+-||.|+|.|.++...++.++++ ++++++++...... .-.+++++ -++++ ..-|.+.+.+++ ..++|+|+-
T Consensus 4 ~k~ili~~~g~~~~~~~~~~~~~-G~~~v~~~~~~d~~~~~~~~ad~~~~~~~~~~~~~y~~~~~l~~~~~~~~~D~i~p 82 (445)
T PRK08462 4 IKRILIANRGEIALRAIRTIQEM-GKEAIAIYSTADKDALYLKYADAKICIGGAKSSESYLNIPAIISAAEIFEADAIFP 82 (445)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEechhhcCCchhhhCCEEEEeCCCchhcccCCHHHHHHHHHHcCCCEEEE
Confidence 34899999999999999999999 88888887533221 12333432 12111 124666666654 468999997
Q ss_pred cCCC-cccHHHHHHHHHcCCeEE
Q 018020 80 PLPT-SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 80 ~~~~-~~h~~~~~~al~~gk~V~ 101 (362)
.... ..+...+..+-+.|..++
T Consensus 83 g~g~lse~~~~a~~~e~~Gi~~~ 105 (445)
T PRK08462 83 GYGFLSENQNFVEICSHHNIKFI 105 (445)
T ss_pred CCCccccCHHHHHHHHHCCCeEE
Confidence 6543 345666666667777655
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.88 E-value=4.9 Score=35.63 Aligned_cols=113 Identities=17% Similarity=0.185 Sum_probs=75.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCC-cccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDA-KVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.||.=.|+|+-.-.++-+..--|.-+|+ .++..++.++...+. +++...+ ....|..+.....++|+|++=.|.+
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg~~G~v~-tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~LDmp~P 174 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVGPEGHVT-TYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVFLDLPDP 174 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhCCCceEE-EEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEEEcCCCh
Confidence 4566667766333333332223445555 678888777655443 2432211 1235566665556899999999876
Q ss_pred -ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 -MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 -~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.+.+.+..+|+.|-.+.| ++.+.++.++..+..++.|-
T Consensus 175 W~~le~~~~~Lkpgg~~~~---y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 175 WNVLEHVSDALKPGGVVVV---YSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred HHHHHHHHHHhCCCcEEEE---EcCCHHHHHHHHHHHHhcCc
Confidence 568899999999988777 66799999999999999853
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.5 Score=38.98 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=65.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH--HHHHcC-CC-------CCCcccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATN--FAKANN-FP-------PDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~--~~~~~~-~~-------~~~~~~~~~~e~l~~~~~D 75 (362)
...+|-+-|+ |++|...+..|... +..|.|.+ |+++..+. ...++. .+ .+..-++++++.++. +|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r-GY~V~gtV-R~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~g--cd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR-GYTVRGTV-RDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDG--CD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC-CCEEEEEE-cCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhC--CC
Confidence 4688999997 78999999999877 78899887 44443222 122221 11 234557888888885 99
Q ss_pred EEE-EcCCCcccHHHHHHHHHcCCeEEEe-CCCCCCHHHHHHHHHHHHHcC
Q 018020 76 AVY-LPLPTSMHVKWAISVAQKKKHLLME-KPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 76 ~V~-i~~~~~~h~~~~~~al~~gk~V~~E-KP~~~~~~~~~~l~~~a~~~~ 124 (362)
.|+ +++|.+.-..- -| +=+...+....-++++|++.+
T Consensus 81 gVfH~Asp~~~~~~~------------~e~~li~pav~Gt~nVL~ac~~~~ 119 (327)
T KOG1502|consen 81 GVFHTASPVDFDLED------------PEKELIDPAVKGTKNVLEACKKTK 119 (327)
T ss_pred EEEEeCccCCCCCCC------------cHHhhhhHHHHHHHHHHHHHhccC
Confidence 998 67775432110 11 112336677778888888876
|
|
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.3 Score=42.67 Aligned_cols=115 Identities=15% Similarity=0.058 Sum_probs=57.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCc-----EEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEE
Q 018020 10 RFGIIGAADIARKLSRAITLAPNA-----VLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~-----~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
||.|||+|.+|...++.|... ++ .-+.|+|.+.-....+.+++ |.+ +. ....+.+..-.+++-
T Consensus 1 kVlvVGaGGlGcE~lKnLal~-Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~---Ka-~vAa~~l~~lNp~v~ 75 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALM-GVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKP---KS-EVAAAAVKAMNPDLK 75 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCCcCCCCeEEEECCCCccccccCcCccCChhHcCcH---HH-HHHHHHHHHHCCCCE
Confidence 689999999999999999766 55 44557886543222222222 211 11 111122222123333
Q ss_pred EEcCCCc---ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 78 YLPLPTS---MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 78 ~i~~~~~---~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
+.+.... .-..+.....=.+..|++. ...+.+.-..+.+.|...++++..+-
T Consensus 76 I~a~~~~v~~~~~~~~~~~f~~~~DvVi~--alDn~~aR~~vn~~C~~~~iPli~~g 130 (435)
T cd01490 76 ITALQNRVGPETEHIFNDEFWEKLDGVAN--ALDNVDARMYVDRRCVYYRKPLLESG 130 (435)
T ss_pred EEEEecccChhhhhhhhHHHhcCCCEEEE--CCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 3222111 1111111222234555553 23456666667777788888777654
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=90.74 E-value=15 Score=34.82 Aligned_cols=90 Identities=19% Similarity=0.077 Sum_probs=55.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----CCC-c----------------------
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----PDA-K---------------------- 60 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~~~-~---------------------- 60 (362)
-+|.|.|+ |.+|...+..++.. +++++++ ++++++.+.+ +++|.. ..- .
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~-G~~vv~~-~~s~~~~~~~-~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA-GANPVAV-VSSEEKAEYC-RALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARR 271 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCeEEEE-eCCHHHHHHH-HHcCCCEEEcccccccccccccccchhhhhhhhccch
Confidence 47899997 89998888777766 7887754 5677766544 557742 000 0
Q ss_pred ccCCHHHHhcCC-CCcEEEEcCCCcccHHHHHHHHHcC-CeEEE
Q 018020 61 VYGSYEALLDDK-DIDAVYLPLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 61 ~~~~~~e~l~~~-~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
....+.++.... .+|+|+-++.. ...+.+.++++.+ .-|.+
T Consensus 272 ~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~~ 314 (393)
T cd08246 272 FGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVIC 314 (393)
T ss_pred HHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEEE
Confidence 001112233333 69999988765 4566677777665 44444
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=90.72 E-value=0.61 Score=42.41 Aligned_cols=117 Identities=9% Similarity=0.084 Sum_probs=65.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC----CCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP----DAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+.-||.|+|+|..|...++.|... ++.=+.++|.+.-....+.+++-+.. ..++-... +-|+.-++++-+-+..
T Consensus 18 ~~s~VLIvG~gGLG~EiaKnLala-GVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~-~~L~eLNp~V~V~~~~ 95 (286)
T cd01491 18 QKSNVLISGLGGLGVEIAKNLILA-GVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQ-ARLAELNPYVPVTVST 95 (286)
T ss_pred hcCcEEEEcCCHHHHHHHHHHHHc-CCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHH-HHHHHHCCCCEEEEEe
Confidence 467899999999999999999766 67667788876544443333321110 00111111 2222223333332221
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
..... ..++ .-.|.+- ...+.+...++-+.|+++++++..+..
T Consensus 96 ~~~~~----~~l~-~fdvVV~--~~~~~~~~~~in~~c~~~~ipfI~a~~ 138 (286)
T cd01491 96 GPLTT----DELL-KFQVVVL--TDASLEDQLKINEFCHSPGIKFISADT 138 (286)
T ss_pred ccCCH----HHHh-cCCEEEE--ecCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 11112 2222 2234433 234788888999999999999876644
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=90.67 E-value=2.4 Score=39.32 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=61.2
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
+.+.++++|++--+..+ .++ +++.+-++|++=|++.+-.+.+++..+.+.||+|++=..+ .+++|.+..++..++.
T Consensus 82 L~~~~~~~Gi~~~stpfd~~sv-d~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~-~t~~Ei~~Av~~i~~~ 159 (327)
T TIGR03586 82 LFERAKELGLTIFSSPFDETAV-DFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGI-ATLEEIQEAVEACREA 159 (327)
T ss_pred HHHHHHHhCCcEEEccCCHHHH-HHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCC-CCHHHHHHHHHHHHHC
Confidence 55568888875211122 223 3455567999999999999999999999999999999998 5999999999999876
Q ss_pred CC
Q 018020 124 GV 125 (362)
Q Consensus 124 ~~ 125 (362)
|.
T Consensus 160 g~ 161 (327)
T TIGR03586 160 GC 161 (327)
T ss_pred CC
Confidence 55
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=90.67 E-value=0.89 Score=33.12 Aligned_cols=33 Identities=9% Similarity=0.252 Sum_probs=25.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
..+++|+|+|.+|...+..+.+.. ...+.++|+
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence 468999999999999988887763 334567776
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.43 Score=39.78 Aligned_cols=45 Identities=11% Similarity=0.142 Sum_probs=34.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN 53 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~ 53 (362)
.+.||.|+|+|..|..-+..+..+ +++++ +.|..+++.+.+...+
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~-~~d~~~~~~~~~~~~~ 63 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGL-GAEVV-VPDERPERLRQLESLG 63 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHT-T-EEE-EEESSHHHHHHHHHTT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHC-CCEEE-eccCCHHHHHhhhccc
Confidence 478999999999999999999999 68866 6688888777665543
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >COG3367 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.77 Score=41.86 Aligned_cols=106 Identities=12% Similarity=0.163 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE--cCCCccc----HHHHHHH
Q 018020 20 ARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL--PLPTSMH----VKWAISV 93 (362)
Q Consensus 20 g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i--~~~~~~h----~~~~~~a 93 (362)
|+.-...++....+.+++++|+.....+...+--+...++.+.+|.+++++... |+.+| +.|-..+ .+.+.+|
T Consensus 15 ~kta~Gllr~~~~~~iv~vvD~~~~~~~~~~~l~~~~~~vpii~s~~~~~e~~~-e~liIgia~~gG~~~~~~~~~i~eA 93 (339)
T COG3367 15 GKTAVGLLRYSEKYAIVAVVDRREAGDDTPRELGGDKADVPIISSVEEALEGLA-EALIIGIAPPGGVLPESWREYIVEA 93 (339)
T ss_pred chhhhhhhcccccceeeeEEeeeccccccHHHhCCccCCCcccccHHHHHhcCc-ceEEEEeecCCCcCcHHHHHHHHHH
Confidence 333444455554599999999876543332232333355678999999998743 55554 4444333 3778999
Q ss_pred HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 94 AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 94 l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+++|.+|..- +-.-+++--++.++|+++|+.+.
T Consensus 94 l~~G~nVvsg--lh~~ls~dp~~~k~A~~~G~rl~ 126 (339)
T COG3367 94 LEAGMNVVSG--LHSFLSDDPEFVKLAERTGVRLD 126 (339)
T ss_pred HHhCchhhhh--hHHHhhcChHHHHHHHHcCCeeE
Confidence 9999998852 33347777789999999999665
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.58 E-value=5.6 Score=37.48 Aligned_cols=91 Identities=9% Similarity=-0.012 Sum_probs=57.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHH----HHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SYE----ALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~----e~l~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. ++..+.++++++++.+.+ +++|.. .+.-+. ++. ++.. ..+|+|+-+
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~-G~~~Vi~~~~~~~~~~~~-~~~ga~-~~i~~~~~~~~~~~~~~~~~~-~g~d~vid~ 261 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIA-GASRIIGVDINEDKFEKA-KEFGAT-DFINPKDSDKPVSEVIREMTG-GGVDYSFEC 261 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHHHH-HHcCCC-cEeccccccchHHHHHHHHhC-CCCCEEEEC
Confidence 4789999999998888877766 664333566777765544 667752 110111 112 2223 469999998
Q ss_pred CCCcccHHHHHHHHHc--CCeEEEe
Q 018020 81 LPTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~--gk~V~~E 103 (362)
+........+..+++. |+-|.+-
T Consensus 262 ~g~~~~~~~~~~~l~~~~G~~v~~g 286 (365)
T cd08277 262 TGNADLMNEALESTKLGWGVSVVVG 286 (365)
T ss_pred CCChHHHHHHHHhcccCCCEEEEEc
Confidence 8876666677777754 5555554
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.49 E-value=2.3 Score=37.34 Aligned_cols=142 Identities=11% Similarity=0.088 Sum_probs=87.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--------C-----------HHHHHHHHHHc-CCCCCCcc------
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--------S-----------LEKATNFAKAN-NFPPDAKV------ 61 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--------~-----------~~~~~~~~~~~-~~~~~~~~------ 61 (362)
.-+|.+||.|..|...+.+|.+.. +.-+-+.|. | ..+.+.++++. .|.|.+.+
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsG-ig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f 108 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSG-IGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF 108 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcC-CCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence 357999999999999999987763 222223332 1 12333344433 23333222
Q ss_pred --cCCHHHHhcCCCCcEEEEcCCCc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc--cC
Q 018020 62 --YGSYEALLDDKDIDAVYLPLPTS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV--HN 136 (362)
Q Consensus 62 --~~~~~e~l~~~~~D~V~i~~~~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r--~~ 136 (362)
-+++++++.. ++|.|+-|..+- .-..++..|.+++.+|+.=--. ..+-.-..+.++--.+ +.
T Consensus 109 ~t~en~~~~~~~-~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Ga------------g~k~DPTri~v~DiskT~~D 175 (263)
T COG1179 109 ITEENLEDLLSK-GFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGA------------GGKLDPTRIQVADISKTIQD 175 (263)
T ss_pred hCHhHHHHHhcC-CCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccc------------cCCCCCceEEeeechhhccC
Confidence 2566777776 899999998874 5577777899999988863221 1222345566664444 79
Q ss_pred hhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 137 PRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 137 p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
|....+|+-+ +....|.-..+.+-|+.
T Consensus 176 PLa~~vR~~L-Rk~~~~~~~gi~vVfS~ 202 (263)
T COG1179 176 PLAAKVRRKL-RKRFPKIKFGVPVVFST 202 (263)
T ss_pred cHHHHHHHHH-HHhccCCccCCceEecC
Confidence 9999999988 43323444456666654
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.62 Score=42.72 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=30.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKAT 47 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~ 47 (362)
-.||++||+|.||...+..+.. .+++|+ ++|++++.++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~-l~D~~~~~~~ 40 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVV-LKDISPEALE 40 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhh-cCCceE-EEeCCHHHHH
Confidence 4689999999999998888776 578866 8899876543
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=90.44 E-value=2.6 Score=42.15 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=61.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEE-EEcCCHH------HHHHHHHHcCCCC-----CCcccCCHHHHhcCCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSA-VASRSLE------KATNFAKANNFPP-----DAKVYGSYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~-v~d~~~~------~~~~~~~~~~~~~-----~~~~~~~~~e~l~~~~~ 74 (362)
+.-||+|||.|.++...+-.|....=-++.+ +.|.... ...+.+++++-.- +...-.++.++++ ..
T Consensus 128 R~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~--~~ 205 (637)
T TIGR03693 128 RNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFE--PA 205 (637)
T ss_pred hcccEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhc--CC
Confidence 5689999999999999999888774233322 3344332 2244556655210 1122455666665 48
Q ss_pred cEEEEcCCCccc---HHHHHHHHHcCCeEEEeCCC
Q 018020 75 DAVYLPLPTSMH---VKWAISVAQKKKHLLMEKPM 106 (362)
Q Consensus 75 D~V~i~~~~~~h---~~~~~~al~~gk~V~~EKP~ 106 (362)
|+|+..+.+..+ ..+-..|++.|++.+.=||.
T Consensus 206 DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~ 240 (637)
T TIGR03693 206 DWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICL 240 (637)
T ss_pred cEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEc
Confidence 999998886654 44555788889665554444
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.40 E-value=1 Score=40.72 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=61.6
Q ss_pred eEEEEEeccH-HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAAD-IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~-~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||.|+|.+. .|..+...+. ++.+++++.-.+ .++ .-.+...+++...+||+||.+-.-..-
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~----------~Di----td~~~v~~~i~~~~PDvVIn~AAyt~v- 63 (281)
T COG1091 1 MKILITGANGQLGTELRRALP--GEFEVIATDRAE----------LDI----TDPDAVLEVIRETRPDVVINAAAYTAV- 63 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC--CCceEEeccCcc----------ccc----cChHHHHHHHHhhCCCEEEECcccccc-
Confidence 4599999855 4767766665 678888765433 333 345667788888889999987443110
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
..|- .+ =||-+..+...+..|+++|++.|.++
T Consensus 64 ---D~aE---~~--~e~A~~vNa~~~~~lA~aa~~~ga~l 95 (281)
T COG1091 64 ---DKAE---SE--PELAFAVNATGAENLARAAAEVGARL 95 (281)
T ss_pred ---cccc---CC--HHHHHHhHHHHHHHHHHHHHHhCCeE
Confidence 0000 00 12335578889999999999998765
|
|
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.58 Score=44.45 Aligned_cols=84 Identities=10% Similarity=0.135 Sum_probs=50.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHH---hcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEAL---LDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~---l~~~~~D~V~i~~~~~~ 85 (362)
||+|||.|..|..++..++++ +++++ ++|+++.. +..+++++=+ .-+.|.+.+ ++..++|+|+..... .
T Consensus 1 kililG~g~~~~~l~~aa~~~-G~~v~-~~d~~~~~~~~~~ad~~~~----~~~~d~~~l~~~~~~~~id~v~~~~e~-v 73 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRL-GVEVI-AVDRYANAPAMQVAHRSYV----INMLDGDALRAVIEREKPDYIVPEIEA-I 73 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCEEE-EEeCCCCCchhhhCceEEE----cCCCCHHHHHHHHHHhCCCEEEeccCc-c
Confidence 699999999999999999888 78866 45555432 2334433211 113565554 444579988754333 3
Q ss_pred cHHHHHHHHHcCCeE
Q 018020 86 HVKWAISVAQKKKHL 100 (362)
Q Consensus 86 h~~~~~~al~~gk~V 100 (362)
....+..+-+.|.++
T Consensus 74 ~~~~~~~l~~~g~~~ 88 (380)
T TIGR01142 74 ATDALFELEKEGYFV 88 (380)
T ss_pred CHHHHHHHHhcCCee
Confidence 333344444556554
|
This enzyme is an alternative to PurN (TIGR00639) |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=90.29 E-value=9.4 Score=35.39 Aligned_cols=89 Identities=16% Similarity=0.137 Sum_probs=57.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l---~~~~~D~V~i~~ 81 (362)
-+|.|.|+ |.+|...++.++.. ++ +++++ ++++++.+.+.+++|... +..+ .++.+.+ ....+|+|+-++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~-~~s~~~~~~~~~~lGa~~-vi~~~~~~~~~~i~~~~~~gvd~vid~~ 232 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGI-CGSDEKCQLLKSELGFDA-AINYKTDNVAERLRELCPEGVDVYFDNV 232 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEE-cCCHHHHHHHHHhcCCcE-EEECCCCCHHHHHHHHCCCCceEEEECC
Confidence 47899997 88998888877766 66 67755 456777777766677531 1111 2333322 124699999887
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
... +.+.+..+++.+-.++
T Consensus 233 g~~-~~~~~~~~l~~~G~iv 251 (345)
T cd08293 233 GGE-ISDTVISQMNENSHII 251 (345)
T ss_pred CcH-HHHHHHHHhccCCEEE
Confidence 764 4566777887764443
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PLN02539 glucose-6-phosphate 1-dehydrogenase | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.6 Score=45.65 Aligned_cols=47 Identities=19% Similarity=0.299 Sum_probs=39.6
Q ss_pred EEEEcCCCcccHHHHHHHHHcC-------CeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 76 AVYLPLPTSMHVKWAISVAQKK-------KHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~g-------k~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
+.++++||..-..++...-++| .-|++|||++.|++.|++|-+...+
T Consensus 130 ifYLA~PP~~f~~i~~~L~~~~l~~~g~~~RiviEKPFG~Dl~SA~~Ln~~l~~ 183 (491)
T PLN02539 130 LFYLALPPSVYPPVCKMIKKCCMNKSGLWTRIVVEKPFGKDLESAEELSSQIGE 183 (491)
T ss_pred EEEEecChHHHHHHHHHHHHhcCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7889999988777777666555 3799999999999999999987765
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.22 E-value=2.3 Score=39.69 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=74.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CH----HHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SY----EALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~----~e~l~~~~~D~V~i~~~ 82 (362)
-+|.|.|+|..|...++.++.. ++..+.+.++++++.+.+ .++|... +..+. ++ .++.....+|+|+-++.
T Consensus 174 ~~vlI~g~g~vG~~a~q~a~~~-G~~~v~~~~~~~~~~~~~-~~~ga~~-~i~~~~~~~~~~l~~~~~~~~~d~vid~~g 250 (351)
T cd08233 174 DTALVLGAGPIGLLTILALKAA-GASKIIVSEPSEARRELA-EELGATI-VLDPTEVDVVAEVRKLTGGGGVDVSFDCAG 250 (351)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHH-HHhCCCE-EECCCccCHHHHHHHHhCCCCCCEEEECCC
Confidence 3688999998888888888777 673334556777766544 5566421 00111 22 23333345999999987
Q ss_pred CcccHHHHHHHHHcCCeEEE-e---CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 83 TSMHVKWAISVAQKKKHLLM-E---KPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~-E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
.....+.+.++++.+-.+++ - .|...+. .... .+++.+.-.... -...+.++.+++ ++|.|
T Consensus 251 ~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~------~~~~-~~~~~i~g~~~~-~~~~~~~~~~~~-~~g~l 315 (351)
T cd08233 251 VQATLDTAIDALRPRGTAVNVAIWEKPISFNP------NDLV-LKEKTLTGSICY-TREDFEEVIDLL-ASGKI 315 (351)
T ss_pred CHHHHHHHHHhccCCCEEEEEccCCCCCccCH------HHHH-hhCcEEEEEecc-CcchHHHHHHHH-HcCCC
Confidence 66666777788877755543 1 2222222 1222 233443322111 124567777877 66766
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=0.93 Score=43.28 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=65.7
Q ss_pred ceeEEEEEeccH-HHHHHHHHHhcCCCcEEEEEEcCCHHHH---HHHHHHcC-CC-CCC---cccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAAD-IARKLSRAITLAPNAVLSAVASRSLEKA---TNFAKANN-FP-PDA---KVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~-~g~~~~~~~~~~~~~~vv~v~d~~~~~~---~~~~~~~~-~~-~~~---~~~~~~~e~l~~~~~D~V 77 (362)
+++||.|+|++. .+...++++.+. +.+++++ |.++... .+.++++- +| +.. ...+.+.+++...++|+|
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~-G~~Vi~~-d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v 80 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA-GHTVILA-DSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL 80 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEE-eCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 479999999987 577889999988 8888855 5554322 22334432 21 100 012333445556789988
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHH------HHHHHHHHHcCCEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEF------DVILNACEENGVQL 127 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~------~~l~~~a~~~~~~~ 127 (362)
+-.+.........+..++.+.++++ .+.+.+ .++.+.+++.|+++
T Consensus 81 IP~~e~~~~~a~~~~~l~~~~~v~~-----~~~~~~~~~~DK~~~~~~~~~~Gipv 131 (389)
T PRK06849 81 IPTCEEVFYLSHAKEELSAYCEVLH-----FDFELLLLLHNKWEFAEQARSLGLSV 131 (389)
T ss_pred EECChHHHhHHhhhhhhcCCcEEEc-----CCHHHHHHhhCHHHHHHHHHHcCCCC
Confidence 8766543222223344544544443 344444 34566778888765
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.32 Score=45.15 Aligned_cols=71 Identities=14% Similarity=0.046 Sum_probs=42.5
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcE-----EEEEEcCCH--HHHHHHHHHc-CC----CCCCcccCCHHHHhcCCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAV-----LSAVASRSL--EKATNFAKAN-NF----PPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~-----vv~v~d~~~--~~~~~~~~~~-~~----~~~~~~~~~~~e~l~~~~~D 75 (362)
+||+|||+ |.+|...+..+...+-+. -+.++|+++ +.++..+.+. +. .+.+.+..+..+.+++ +|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~--aD 78 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD--VD 78 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC--CC
Confidence 58999999 999998888776543232 244788876 5443222111 00 0112333455566664 99
Q ss_pred EEEEcC
Q 018020 76 AVYLPL 81 (362)
Q Consensus 76 ~V~i~~ 81 (362)
+|+++.
T Consensus 79 iVVitA 84 (323)
T cd00704 79 VAILVG 84 (323)
T ss_pred EEEEeC
Confidence 999863
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=90.15 E-value=7.5 Score=36.67 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=59.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----CHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----SYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~e~l---~~~~~D~V~i~~ 81 (362)
-+|.|+|+|.+|...+..++.. ++..+.+.++++++.+ +++++|.. .+.-+. ++.+.+ ....+|+|+-++
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~-G~~~vi~~~~~~~~~~-~~~~lGa~-~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~ 264 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAA-GASRIIGIDINPDKFE-LAKKFGAT-DCVNPKDHDKPIQQVLVEMTDGGVDYTFECI 264 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCHHHHH-HHHHcCCC-EEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence 4688999999999888888877 5633335577777766 44677752 111111 132222 112699999998
Q ss_pred CCcccHHHHHHHHHc--CCeEEEe
Q 018020 82 PTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~--gk~V~~E 103 (362)
........+..+++. |+-|.+-
T Consensus 265 g~~~~~~~a~~~l~~~~G~~v~~g 288 (368)
T cd08300 265 GNVKVMRAALEACHKGWGTSVIIG 288 (368)
T ss_pred CChHHHHHHHHhhccCCCeEEEEc
Confidence 876677778888855 4455543
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=3.6 Score=38.11 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=58.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhcCC--CCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLDDK--DIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~~~--~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...+..++..-++..+.++++++++.+ +++++|.. .++ .++.+.+... ++|+|+-++.
T Consensus 162 ~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~-~~~~~Ga~---~~i~~~~~~~~~~~~~~g~~~d~vid~~g 237 (339)
T PRK10083 162 DVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLA-LAKESGAD---WVINNAQEPLGEALEEKGIKPTLIIDAAC 237 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHH-HHHHhCCc---EEecCccccHHHHHhcCCCCCCEEEECCC
Confidence 378999999999888777775326766667888877654 45667753 122 1344444322 3568888887
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
.......+.++++.+-.++
T Consensus 238 ~~~~~~~~~~~l~~~G~~v 256 (339)
T PRK10083 238 HPSILEEAVTLASPAARIV 256 (339)
T ss_pred CHHHHHHHHHHhhcCCEEE
Confidence 6556777778887764443
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.9 Score=37.54 Aligned_cols=48 Identities=35% Similarity=0.459 Sum_probs=38.8
Q ss_pred ceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC
Q 018020 7 AAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFP 56 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~ 56 (362)
.++.+++||+|..|+. ..+.. +..+++.+|..+++.+++.+++.++.|
T Consensus 9 ~~v~~~~vgtgrl~ra~~~ra~--h~~~~cs~i~srS~~~a~~LaE~~~a~ 57 (289)
T COG5495 9 ARVVVGIVGTGRLGRAALLRAD--HVVVACSAISSRSRDRAQNLAETYVAP 57 (289)
T ss_pred eeeEEEEeecchHHHHHHHHhc--chheeehhhhhcCHHHHhhchhccCCC
Confidence 4789999999998887 33332 336888999999999999999988765
|
|
| >COG4566 TtrR Response regulator [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.3 Score=37.25 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=45.4
Q ss_pred cEEEEEEcCCHHHHHHHHHH---cCCCCCCcccCCHHHHhcCC-----------------------------CCcEEEEc
Q 018020 33 AVLSAVASRSLEKATNFAKA---NNFPPDAKVYGSYEALLDDK-----------------------------DIDAVYLP 80 (362)
Q Consensus 33 ~~vv~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~e~l~~~-----------------------------~~D~V~i~ 80 (362)
..+|-|+|.+..-.+.+..- .|+. +.+|.|.+++|+.. +++.=+|.
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~--v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIf 81 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQ--VKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIF 81 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCce--eeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEE
Confidence 34566666666544444333 2432 46677777776653 22233333
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCC
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMAL 108 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~ 108 (362)
..-+--.+++.+|+|+|-.=|+|||+..
T Consensus 82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~ 109 (202)
T COG4566 82 LTGHGDIPMAVQAMKAGAVDFLEKPFSE 109 (202)
T ss_pred EeCCCChHHHHHHHHcchhhHHhCCCch
Confidence 3344557889999999988899999855
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.68 Score=42.96 Aligned_cols=71 Identities=17% Similarity=0.223 Sum_probs=41.9
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-C-CCC-CCc---ccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-N-FPP-DAK---VYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~-~~~-~~~---~~~~~~e~l~~~~~D~V~i~ 80 (362)
+.||+|||+ |++|...+..+...+-+.-+.++|+++ ++..+.+. + .+. ... -.+|+.+.+.+ .|+|+++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~--aDiVVit 93 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKG--ADLVIIP 93 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCC--CCEEEEe
Confidence 469999999 999998888887554444444888866 21111110 0 000 111 12344566664 9999986
Q ss_pred CC
Q 018020 81 LP 82 (362)
Q Consensus 81 ~~ 82 (362)
.-
T Consensus 94 AG 95 (323)
T PLN00106 94 AG 95 (323)
T ss_pred CC
Confidence 43
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=89.87 E-value=3.1 Score=39.82 Aligned_cols=107 Identities=10% Similarity=0.066 Sum_probs=62.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHH----HhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEA----LLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e----~l~~~~~D~V~i~~ 81 (362)
-+|.|.|+|.+|...+..++.. +++++.+.|+++++.+ +++++|.. ...+ .++.+ +.....+|+|+-++
T Consensus 187 ~~VlV~G~G~iG~~aiqlAk~~-Ga~~vi~~d~~~~r~~-~a~~~Ga~--~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~ 262 (393)
T TIGR02819 187 STVYIAGAGPVGLAAAASAQLL-GAAVVIVGDLNPARLA-QARSFGCE--TVDLSKDATLPEQIEQILGEPEVDCAVDCV 262 (393)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHH-HHHHcCCe--EEecCCcccHHHHHHHHcCCCCCcEEEECC
Confidence 3678899999999888888766 6766667788776544 55667752 1111 12322 22223588888877
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
....|-...+. .. ..+....++.++.++..|..+++|.
T Consensus 263 G~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 263 GFEARGHGHDG--------KK----EAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred CCccccccccc--------cc----cchHHHHHHHHHHhhCCCEEEEeee
Confidence 76532100000 00 0122345555667777777777775
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=89.87 E-value=1 Score=40.72 Aligned_cols=68 Identities=22% Similarity=0.242 Sum_probs=39.9
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH---HHhcC----CC-CcEEEEc
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE---ALLDD----KD-IDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~---e~l~~----~~-~D~V~i~ 80 (362)
+|.|+|+ |.+|...++.|.+. +.+|.+ ..|++++... .++..-.--++|.+ +.++. .. +|.|+.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~-~~R~~~~~~~----~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~ 74 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA-SVPFLV-ASRSSSSSAG----PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLV 74 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC-CCcEEE-EeCCCccccC----CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEe
Confidence 4789997 99999999988766 677765 4466554321 12110001133433 44421 24 8888877
Q ss_pred CCC
Q 018020 81 LPT 83 (362)
Q Consensus 81 ~~~ 83 (362)
+|+
T Consensus 75 ~~~ 77 (285)
T TIGR03649 75 APP 77 (285)
T ss_pred CCC
Confidence 764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=89.75 E-value=1 Score=42.99 Aligned_cols=87 Identities=9% Similarity=0.153 Sum_probs=51.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHH---HhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEA---LLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e---~l~~~~~D~V~i~~~ 82 (362)
+++||+|||.|..|..++..+++. +++++ ++|.++.. ...+++.+-. .-+.|.+. +++..++|+|+....
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~-G~~v~-~~~~~~~~~~~~~ad~~~~----~~~~d~~~l~~~~~~~~id~vi~~~e 84 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRL-GVEVI-AVDRYANAPAMQVAHRSHV----IDMLDGDALRAVIEREKPDYIVPEIE 84 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCCCCchHHhhhheEE----CCCCCHHHHHHHHHHhCCCEEEEeeC
Confidence 567999999999888888888887 78876 45554432 2234443211 01345444 445557998886543
Q ss_pred CcccHHHHHHHHHcCCeE
Q 018020 83 TSMHVKWAISVAQKKKHL 100 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V 100 (362)
. .....+..+.+.|.++
T Consensus 85 ~-~~~~~~~~l~~~g~~~ 101 (395)
T PRK09288 85 A-IATDALVELEKEGFNV 101 (395)
T ss_pred c-CCHHHHHHHHhcCCee
Confidence 3 2233344444556554
|
|
| >PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.4 Score=39.37 Aligned_cols=74 Identities=12% Similarity=0.220 Sum_probs=53.9
Q ss_pred HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 018020 46 ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121 (362)
Q Consensus 46 ~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~ 121 (362)
.+++++++|+|--+.+. .+.+.+.+ -+|++-|...+....++++++.+.||+|++=|+.+.+.++..-.++...
T Consensus 79 L~~vk~~~GlpvvTeV~~~~~~~~~ae--~vDilQIgAr~~rntdLL~a~~~t~kpV~lKrGqf~s~~e~~~aae~i~ 154 (281)
T PRK12457 79 FEEVKARFGVPVITDVHEVEQAAPVAE--VADVLQVPAFLARQTDLVVAIAKTGKPVNIKKPQFMSPTQMKHVVSKCR 154 (281)
T ss_pred HHHHHHHHCCceEEEeCCHHHHHHHhh--hCeEEeeCchhhchHHHHHHHhccCCeEEecCCCcCCHHHHHHHHHHHH
Confidence 45778899986211111 12222333 4999999999999999999999999999999999999877555554443
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=89.66 E-value=3.1 Score=37.31 Aligned_cols=73 Identities=18% Similarity=0.113 Sum_probs=44.6
Q ss_pred HHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHc-C-CeE
Q 018020 24 SRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQK-K-KHL 100 (362)
Q Consensus 24 ~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~-g-k~V 100 (362)
+.+|++.. .++|. .+|++++.+++ +.+.|+- ....++ .+.+.+ .|+|++|+|...-..++.+.... + ..+
T Consensus 2 A~aL~~~g~~~~v~-g~d~~~~~~~~-a~~~g~~--~~~~~~-~~~~~~--~DlvvlavP~~~~~~~l~~~~~~~~~~~i 74 (258)
T PF02153_consen 2 ALALRKAGPDVEVY-GYDRDPETLEA-ALELGII--DEASTD-IEAVED--ADLVVLAVPVSAIEDVLEEIAPYLKPGAI 74 (258)
T ss_dssp HHHHHHTTTTSEEE-EE-SSHHHHHH-HHHTTSS--SEEESH-HHHGGC--CSEEEE-S-HHHHHHHHHHHHCGS-TTSE
T ss_pred hHHHHhCCCCeEEE-EEeCCHHHHHH-HHHCCCe--eeccCC-HhHhcC--CCEEEEcCCHHHHHHHHHHhhhhcCCCcE
Confidence 45666653 57765 68999886554 4566753 133444 556664 89999999998887777776652 2 245
Q ss_pred EEe
Q 018020 101 LME 103 (362)
Q Consensus 101 ~~E 103 (362)
+++
T Consensus 75 v~D 77 (258)
T PF02153_consen 75 VTD 77 (258)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=89.56 E-value=12 Score=34.61 Aligned_cols=89 Identities=16% Similarity=0.121 Sum_probs=56.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~---~~~~D~V~i~~ 81 (362)
-+|.|.|+ |.+|...++.++.. ++++++++ +++++.+.+.+.+|.. .+.-+. ++.+.+. ...+|+|+-++
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~-~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~ 229 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK-GCYVVGSA-GSDEKVDLLKNKLGFD-DAFNYKEEPDLDAALKRYFPNGIDIYFDNV 229 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc-CCEEEEEe-CCHHHHHHHHHhcCCc-eeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence 36889997 88898888877766 77876544 5667666665547752 111111 3333222 24689999887
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
.. ...+.+..+++.+-.++
T Consensus 230 g~-~~~~~~~~~l~~~G~iv 248 (338)
T cd08295 230 GG-KMLDAVLLNMNLHGRIA 248 (338)
T ss_pred CH-HHHHHHHHHhccCcEEE
Confidence 75 45666777777664443
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=89.54 E-value=1.8 Score=41.41 Aligned_cols=119 Identities=12% Similarity=0.096 Sum_probs=64.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-------HcCCCCCCcccCCHHHHhcC--CCCcEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-------ANNFPPDAKVYGSYEALLDD--KDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~l~~--~~~D~V 77 (362)
+..||+|||+|..|...+..|... ++.-+.++|.+.-....+-+ ..|.+ ++ ....+-|.. +.+++.
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~-Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~---Ka-~~a~~~l~~~np~v~v~ 111 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAA-GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKP---KI-ESAKNRILEINPYCQVD 111 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCEecccccCcCcccChHHCCCc---HH-HHHHHHHHHHCCCCeEE
Confidence 356899999999999999999877 66666688875322221111 12221 11 112222222 233333
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
.+.. ....+-+...++ +-.|+++ .+.+.+.-.-+.+.|.+.++++..+....|
T Consensus 112 ~~~~--~~~~~~~~~~~~-~~D~Vvd--~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 112 LYET--RLSSENALDILA-PYDVVVD--GTDNFPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred EEec--ccCHHhHHHHHh-CCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 3322 222222223332 3456654 344565555566778888888877766655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 362 | ||||
| 1ydw_A | 362 | X-Ray Structure Of Gene Product From Arabidopsis Th | 1e-140 | ||
| 4had_A | 350 | Crystal Structure Of Probable Oxidoreductase Protei | 5e-23 | ||
| 3rbv_A | 350 | Crystal Structure Of Kijd10, A 3-Ketoreductase From | 1e-19 | ||
| 3rcb_A | 350 | Crystal Structure Of The K102e Mutant Of Kijd10, A | 3e-19 | ||
| 3rc7_A | 350 | Crystal Structure Of The Y186f Mutant Of Kijd10, A | 4e-19 | ||
| 3rc9_A | 350 | Crystal Structure Of The K102a Mutant Of Kijd10, A | 6e-19 | ||
| 3e9m_A | 330 | Crystal Structure Of An Oxidoreductase From Enteroc | 7e-14 | ||
| 3evn_A | 329 | Crystal Structure Of Putative Oxidoreductase From S | 3e-13 | ||
| 2o48_X | 334 | Crystal Structure Of Mammalian Dimeric Dihydrodiol | 2e-12 | ||
| 3moi_A | 387 | The Crystal Structure Of The Putative Dehydrogenase | 3e-11 | ||
| 2glx_A | 332 | Crystal Structure Analysis Of Bacterial 1,5-Af Redu | 2e-10 | ||
| 1ryd_A | 387 | Crystal Structure Of Glucose-Fructose Oxidoreductas | 6e-09 | ||
| 1ofg_A | 381 | Glucose-Fructose Oxidoreductase Length = 381 | 6e-09 | ||
| 1h6d_A | 433 | Oxidized Precursor Form Of Glucose-Fructose Oxidore | 6e-09 | ||
| 1zh8_A | 340 | Crystal Structure Of Oxidoreductase (tm0312) From T | 9e-09 | ||
| 1evj_A | 352 | Crystal Structure Of Glucose-Fructose Oxidoreductas | 1e-08 | ||
| 4iq0_A | 328 | Crystal Structure Of Oxidoreductase, Gfo/idh/moca F | 3e-08 | ||
| 3ezy_A | 344 | Crystal Structure Of Probable Dehydrogenase Tm_0414 | 3e-08 | ||
| 2ho5_A | 325 | Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAM | 3e-08 | ||
| 3db2_A | 354 | Crystal Structure Of A Putative Nadph-Dependent Oxi | 4e-08 | ||
| 3q2k_A | 370 | Crystal Structure Of The Wlba Dehydrogenase From Bo | 4e-08 | ||
| 3ec7_A | 357 | Crystal Structure Of Putative Dehydrogenase From Sa | 2e-06 | ||
| 3gfg_A | 367 | Structure Of Putative Oxidoreductase Yvaa From Baci | 2e-06 | ||
| 3gdo_A | 358 | Crystal Structure Of Putative Oxidoreductase Yvaa F | 2e-06 | ||
| 3e18_A | 359 | Crystal Structure Of Nad-Binding Protein From Liste | 4e-06 | ||
| 4fb5_A | 393 | Crystal Structure Of A Probable Oxidoreduxtase Prot | 1e-04 | ||
| 3euw_A | 344 | Crystal Structure Of A Myo-Inositol Dehydrogenase F | 1e-04 |
| >pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At4g09670 Length = 362 | Back alignment and structure |
|
| >pdb|4HAD|A Chain A, Crystal Structure Of Probable Oxidoreductase Protein From Rhizobium Etli Cfn 42 Length = 350 | Back alignment and structure |
|
| >pdb|3RBV|A Chain A, Crystal Structure Of Kijd10, A 3-Ketoreductase From Actinomadura Kijaniata Incomplex With Nadp Length = 350 | Back alignment and structure |
|
| >pdb|3RCB|A Chain A, Crystal Structure Of The K102e Mutant Of Kijd10, A 3-Ketoreductase From Actinomadura Kijaniata In Complex With Tdp-Benzene And Nadp Length = 350 | Back alignment and structure |
|
| >pdb|3RC7|A Chain A, Crystal Structure Of The Y186f Mutant Of Kijd10, A 3-Ketoreductase From Actinomadura Kijaniata In Complex With Tdp-Benzene And Nadp Length = 350 | Back alignment and structure |
|
| >pdb|3RC9|A Chain A, Crystal Structure Of The K102a Mutant Of Kijd10, A 3-Ketoreductase From Actinomadura Kijaniata In Complex With Tdp-Benzene And Nadp Length = 350 | Back alignment and structure |
|
| >pdb|3E9M|A Chain A, Crystal Structure Of An Oxidoreductase From Enterococcus Faecalis Length = 330 | Back alignment and structure |
|
| >pdb|3EVN|A Chain A, Crystal Structure Of Putative Oxidoreductase From Streptococcus Agalactiae 2603vR Length = 329 | Back alignment and structure |
|
| >pdb|2O48|X Chain X, Crystal Structure Of Mammalian Dimeric Dihydrodiol Dehydrogenase Length = 334 | Back alignment and structure |
|
| >pdb|3MOI|A Chain A, The Crystal Structure Of The Putative Dehydrogenase From Bordetella Bronchiseptica Rb50 Length = 387 | Back alignment and structure |
|
| >pdb|2GLX|A Chain A, Crystal Structure Analysis Of Bacterial 1,5-Af Reductase Length = 332 | Back alignment and structure |
|
| >pdb|1RYD|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis Length = 387 | Back alignment and structure |
|
| >pdb|1OFG|A Chain A, Glucose-Fructose Oxidoreductase Length = 381 | Back alignment and structure |
|
| >pdb|1H6D|A Chain A, Oxidized Precursor Form Of Glucose-Fructose Oxidoreductase From Zymomonas Mobilis Complexed With Glycerol Length = 433 | Back alignment and structure |
|
| >pdb|1ZH8|A Chain A, Crystal Structure Of Oxidoreductase (tm0312) From Thermotoga Maritima At 2.50 A Resolution Length = 340 | Back alignment and structure |
|
| >pdb|1EVJ|A Chain A, Crystal Structure Of Glucose-Fructose Oxidoreductase (Gfor) Delta1-22 S64d Length = 352 | Back alignment and structure |
|
| >pdb|4IQ0|A Chain A, Crystal Structure Of Oxidoreductase, Gfo/idh/moca Family From Streptococcus Pneumoniae With Reductive Methylated Lysine Length = 328 | Back alignment and structure |
|
| >pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|2HO5|A Chain A, Crystal Structure Of Oxidoreductase, GfoIDHMOCA FAMILY FROM Streptococcus Pneumoniae Length = 325 | Back alignment and structure |
|
| >pdb|3DB2|A Chain A, Crystal Structure Of A Putative Nadph-Dependent Oxidoreductase (Dhaf_2064) From Desulfitobacterium Hafniense Dcb-2 At 1.70 A Resolution Length = 354 | Back alignment and structure |
|
| >pdb|3Q2K|A Chain A, Crystal Structure Of The Wlba Dehydrogenase From Bordetella Pertussis In Complex With Nadh And Udp-Glcnaca Length = 370 | Back alignment and structure |
|
| >pdb|3EC7|A Chain A, Crystal Structure Of Putative Dehydrogenase From Salmonella Typhimurium Lt2 Length = 357 | Back alignment and structure |
|
| >pdb|3GFG|A Chain A, Structure Of Putative Oxidoreductase Yvaa From Bacillus Subtilis In Triclinic Form Length = 367 | Back alignment and structure |
|
| >pdb|3GDO|A Chain A, Crystal Structure Of Putative Oxidoreductase Yvaa From Bacillus Subtilis Length = 358 | Back alignment and structure |
|
| >pdb|3E18|A Chain A, Crystal Structure Of Nad-Binding Protein From Listeria Innocua Length = 359 | Back alignment and structure |
|
| >pdb|4FB5|A Chain A, Crystal Structure Of A Probable Oxidoreduxtase Protein Length = 393 | Back alignment and structure |
|
| >pdb|3EUW|A Chain A, Crystal Structure Of A Myo-Inositol Dehydrogenase From Corynebacterium Glutamicum Atcc 13032 Length = 344 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 362 | |||
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 1e-151 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 3e-98 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 1e-79 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 2e-79 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 7e-78 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 1e-74 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 2e-73 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 2e-72 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 1e-65 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 1e-56 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 6e-51 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 6e-50 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 2e-49 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 3e-46 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 1e-44 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 2e-44 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 4e-44 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 8e-44 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 2e-43 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 2e-42 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 5e-42 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 4e-41 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 5e-40 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 6e-40 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 9e-37 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 2e-36 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 2e-36 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 6e-35 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 3e-34 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 1e-32 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 3e-31 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 3e-31 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 4e-31 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 4e-31 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 2e-30 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 9e-30 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 2e-29 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 4e-28 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 7e-27 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 1e-26 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 1e-24 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 1e-24 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 4e-24 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 4e-14 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-07 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 5e-06 |
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A Length = 362 | Back alignment and structure |
|---|
Score = 430 bits (1108), Expect = e-151
Identities = 243/359 (67%), Positives = 302/359 (84%), Gaps = 1/359 (0%)
Query: 3 TESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY 62
+ ++ IR G++G ADIARK+SRAI LAPNA +S VASRSLEKA FA ANN+P K++
Sbjct: 1 SATETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH 60
Query: 63 GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122
GSYE+LL+D +IDA+Y+PLPTS+HV+WAI A+K KH+L+EKP+A+NV EFD I++ACE
Sbjct: 61 GSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEA 120
Query: 123 NGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLD 182
NGVQ+MDGTMWVHNPRTA +KEF+SD +RFGQL+T+ SCFSFAGD +FLKNDIRVKP LD
Sbjct: 121 NGVQIMDGTMWVHNPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLD 180
Query: 183 GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242
GLGALGDAGWY IR+ L AN++ELPKTV A G VLNEAGVILSCGASL W+DGR AT
Sbjct: 181 GLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTATIY 240
Query: 243 CSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVV 302
CSFLAN+TM+ITA GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV PSEH V
Sbjct: 241 CSFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEHTV 300
Query: 303 TTDIPQEACMVREFSRLVANIK-NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360
T++PQEACMVREF+RLV IK NG+KP+ WP ISRKTQL++DAVK S+++ ++ I +
Sbjct: 301 KTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQISL 359
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* Length = 350 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 3e-98
Identities = 88/356 (24%), Positives = 154/356 (43%), Gaps = 28/356 (7%)
Query: 3 TESQAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV 61
+ IR G+IG ADIA + A+ P ++A+ASR ++A F + P
Sbjct: 22 PANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEP---- 77
Query: 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121
Y ALL+ D+DAVY+PLP +H +W + KH+L EKP+ + + + +
Sbjct: 78 VEGYPALLERDDVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVAR 137
Query: 122 ENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDL 181
E G+ LM+ M++H+P+ Q+ + + + G++R+ + F+ + DIR + D+
Sbjct: 138 ERGLLLMENFMFLHHPQHRQVADMLDE-GVIGEIRSFAASFTIPPKPQ---GDIRYQADV 193
Query: 182 DGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATF 241
G GAL D G Y IR+ + + V A + V++ A L G A
Sbjct: 194 GG-GALLDIGVYPIRAAGLFLGAD-LEFVGA-VLRHERDRDVVVGGNALLTTRQGVTAQL 250
Query: 242 SCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHV 301
+ T + G+ G L ++ P + + +E
Sbjct: 251 TFGMEHAYTNNYEFRGSTGRLWMNRVFTPPATYQPVVHIERQ------------DHAEQF 298
Query: 302 VTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEP 357
V Q A +R F++ V + + ++W S + ++DAV+T + P
Sbjct: 299 VLPAHDQFAKSIRAFAQAVLS----GEHPREWSEDSLRQASLVDAVRTGARDIYFP 350
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Length = 330 | Back alignment and structure |
|---|
Score = 246 bits (629), Expect = 1e-79
Identities = 71/352 (20%), Positives = 132/352 (37%), Gaps = 37/352 (10%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
S IR+GI+ A I + + + A + +ASR LE A AK P YGS
Sbjct: 2 SLDKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIP---VAYGS 58
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YE L D+ ID +Y+P H A + K +L+EKP LN AE + + +E G
Sbjct: 59 YEELCKDETIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQG 118
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
V LM+ V P T ++K + + G++ + S ++ + G
Sbjct: 119 VFLMEAQKSVFLPITQKVKATIQE-GGLGEILWVQSVTAY---PNVDHIPWFYSREAGG- 173
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
GAL +G Y ++ + + E + V + C +L + +G + +
Sbjct: 174 GALHGSGSYPLQYLQYVLGKE-IQEVTGTA--TYQQGATDSQCNLALKFAEGTLGNIFIN 230
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
+ ++T GT G + + +F ++ + A Y + V
Sbjct: 231 VGLKIPSEMTICGTKGQIVIPNF---WKTDCAYYTDA----------------QGNTVKW 271
Query: 305 DIPQEACM---VREFSRLVANIKNGSKPEQKWPI-ISRKTQLIIDAVKTSIE 352
+ + ++ +++ ++ T I+++
Sbjct: 272 SEQFTSEFTYEINHVNQC---LQDKKLTSPVMTKELTIATVKIVESFYQEWF 320
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} Length = 329 | Back alignment and structure |
|---|
Score = 245 bits (628), Expect = 2e-79
Identities = 66/348 (18%), Positives = 126/348 (36%), Gaps = 31/348 (8%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
S + +R+G++ A +A + + LA N + AV+SR+LE A FA + P K Y
Sbjct: 2 SLSKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLP---KAYDK 58
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
E +L D+ ID +Y+ H K A + KH+L+EKP L + + + E
Sbjct: 59 LEDMLADESIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCN 118
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
+ LM+ V P T +K+ ++ G++ ++ S ++ + +L G
Sbjct: 119 LFLMEAQKSVFIPMTQVIKKLLAS-GEIGEVISISSTTAYPNIDH---VTWFRELELGG- 173
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
G + Y + + + D + L +G + +
Sbjct: 174 GTVHFMAPYALSYLQYLFDAT-ITHASGTA--TFPKGQSDSQSKLLLQLSNGVLVDIFLT 230
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
N+ ++ GT G L + F ++ A N + +
Sbjct: 231 TRLNLPHEMIIYGTEGRLIIPHF---WKTTHAKLVRNDT-------------SARTIQVD 274
Query: 305 DIPQEACMVREFSRLVANIKNGSKPEQKWPI-ISRKTQLIIDAVKTSI 351
+ S++ I G + ++ II+ + S
Sbjct: 275 MVSDFEKEAYHVSQM---ILEGQRVSHIMTPQLTLSGVKIIEDLYRSW 319
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* Length = 433 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 7e-78
Identities = 71/363 (19%), Positives = 134/363 (36%), Gaps = 30/363 (8%)
Query: 9 IRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGSYE 66
+ I+G A ++ ++ + A+ S + EKA A Y +++
Sbjct: 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFD 143
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
+ D IDAVY+ LP S+H ++AI + KH++ EKPMA +VA+ +++A + +
Sbjct: 144 KIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK 203
Query: 127 LMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGA 186
LM G ++P + + + + G+L + + S D R++ +L G G+
Sbjct: 204 LMIGYRCHYDPMNRAAVKLIRE-NQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGS 262
Query: 187 LGDAGWYGIRSILWANDYELPKTVIAMHGPVLNE---AGVILSCGASLHWDDGRVATFSC 243
L D G YG+ + E P V A N+ V + + G ++ +
Sbjct: 263 LMDIGIYGLNGTRYLLGEE-PIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGAS 321
Query: 244 SFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVT 303
S+ T + G L + + + S T +
Sbjct: 322 SYSTTTTSRFSVQGDKAVLLMDPA-TGYYQNLISVQTPGH------------ANQSMMPQ 368
Query: 304 TDIPQEACMVREFSRLVANIKNGSKP----EQKWPIISRKTQLIIDAVKTSIERGFEPIE 359
+P + L + N E+ + +I A+ + G P+
Sbjct: 369 FIMPANNQFSAQLDHLAEAVINNKPVRSPGEE-----GMQDVRLIQAIYEAARTG-RPVN 422
Query: 360 IKW 362
W
Sbjct: 423 TDW 425
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 Length = 340 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 1e-74
Identities = 78/350 (22%), Positives = 132/350 (37%), Gaps = 39/350 (11%)
Query: 9 IRFGIIGAADIARKLS-RAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
IR GI+G AR+L A+ + ++AV SR+ A FAK P V+ SYE
Sbjct: 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNP---AVFDSYE 75
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
LL+ +DAV L LP +++ + +K H++ EKP++ +V ++ E++
Sbjct: 76 ELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT 135
Query: 127 LMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAE--FLKNDIRVKPDLDGL 184
+ + H P + KE V G M+ D ++ D R KP G
Sbjct: 136 VYIAENFRHVPAFWKAKELVES-GAIGDPVFMNWQIWVGMDENNKYVHTDWRKKPKHVG- 193
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244
G L D G + ++ + + A+ + G + + +++G V ++ S
Sbjct: 194 GFLSDGGVHHAAAMRLILGE--IEWISAVAKDLSPLLGGMDFLSSIFEFENGTVGNYTIS 251
Query: 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTT 304
+ TGT G + + I EEE
Sbjct: 252 YSLKGNERFEITGTKGKISISWDKIVLNEEEMK--------------------------- 284
Query: 305 DIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERG 354
+PQE +EF + G + P+ + K I+A S
Sbjct: 285 -VPQENSYQKEFEDFYQVVAEGKPNDLGSPVQALKDLAFIEACVRSAGNK 333
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} Length = 332 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 2e-73
Identities = 68/356 (19%), Positives = 127/356 (35%), Gaps = 30/356 (8%)
Query: 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL 69
R+G+IGA+ IAR+ A + ++ S S E+ +A N K S E L+
Sbjct: 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIG---KSVTSVEELV 58
Query: 70 DDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129
D D+DAVY+ +H + ++ + KH+L EKP+A+ + + ++ A E GV L
Sbjct: 59 GDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGT 118
Query: 130 GTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGD 189
+ M++ +++ R G+ + R++ G G + D
Sbjct: 119 NHHLRNAAAHRAMRDAIAE-GRIGRPIAARVFHAVYLPPHL--QGWRLERPEAGGGVILD 175
Query: 190 AGWYGIRSILWANDYELPKTVIAM-HGPVLNEAGVILSCGASLHWDDGRVATFSCSFLAN 248
+ ++ + + + P +A+ H + + GV L + G +A F +F
Sbjct: 176 ITVHDADTLRFVLNDD-PAEAVAISHSAGMGKEGVEDGVMGVLRFQSGVIAQFHDAFTTK 234
Query: 249 MTMD-ITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIP 307
GT GSL + V +E +
Sbjct: 235 FAETGFEVHGTEGSLIGRNV-----------------MTQKPVGTVTLRNAEGESQLPLD 277
Query: 308 QEACMVREFSRLVANIKNGSKPEQKWPII-SRKTQLIIDAVKTSIERGFEPIEIKW 362
+ + I+ +P + AV + G + EI+
Sbjct: 278 PANLYETALAAFHSAIEGHGQPS--ATGEDGVWSLATGLAVVKAAATG-QAAEIET 330
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X Length = 334 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 2e-72
Identities = 76/347 (21%), Positives = 136/347 (39%), Gaps = 26/347 (7%)
Query: 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
A+R+GI+ I+ + + P + + AVA+R L +A FA+ ++ P K YGSY
Sbjct: 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIP---KAYGSY 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
E L D +++ Y+ H + K +L EKPM +N AE ++ G+
Sbjct: 59 EELAKDPNVEVAYVGTQHPQHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGL 118
Query: 126 QLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLG 185
LM+ P + ++ ++ G LR + F V G G
Sbjct: 119 FLMEAIWTRFFPASEALRSVLAQ-GTLGDLRVARAEFGKNLT----HVPRAVDWAQAG-G 172
Query: 186 ALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
AL D G Y ++ I + P+ + M +E GV + L + +F+CS
Sbjct: 173 ALLDLGIYCVQFISMVFGGQKPEKISVMG--RRHETGVDDTVTVLLQYPGEVHGSFTCSI 230
Query: 246 LANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTD 305
A ++ + +GT G QL + + E + F +P ++ +
Sbjct: 231 TAQLSNTASVSGTKGMAQLLNP--CWCPTELVVKGEHKEFL-------LPPVPKNCNFDN 281
Query: 306 IPQEACMVREFSRLVANIKNGSKPEQKWPI-ISRKTQLIIDAVKTSI 351
+ + ++ G K P+ S I++ V+ +I
Sbjct: 282 GAGMSYEAKHVREC---LRKGLKESPVIPLVESELLADILEEVRRAI 325
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} Length = 354 | Back alignment and structure |
|---|
Score = 210 bits (537), Expect = 1e-65
Identities = 71/358 (19%), Positives = 129/358 (36%), Gaps = 18/358 (5%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
+ IG A ++ A T + L SR+ +K F K N + EAL
Sbjct: 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN----CAGDATMEAL 61
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
L +D++ V + +P H + A+ KH+ +EKP+++++ I +E GV+ +
Sbjct: 62 LAREDVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFL 121
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALG 188
G +MKE + + G++ ++ + FS E K + R +P G L
Sbjct: 122 CGHSSRRLGALRKMKEMIDT-KEIGEVSSIEAVFSNERGLELKKGNWRGEPATAPGGPLT 180
Query: 189 DAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLAN 248
G + I ++ + V P+ E I L ++DG+ A ++
Sbjct: 181 QLGVHQIDNLQFLLGP--VARVFNFGKPMYTEVENITVNQTLLEFEDGKQAYLGTNWACP 238
Query: 249 MTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSE-HVVTTDIP 307
I GT +L + + + +T P V D
Sbjct: 239 GVFSINVYGTKANLFYQLDFSWWSNSDVTDEHSTLIKREFASMSDDPDNRILRDVKVDFE 298
Query: 308 QEACMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTSIERGFEPIEIK 361
+ E + I+NG + I + ++ A S+ P+EI
Sbjct: 299 SVDHLRVEVEEVADVIRNGGE-----TEIGAEASLRNLAVVLAAVKSVHEK-RPVEIA 350
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} Length = 330 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 6e-51
Identities = 47/270 (17%), Positives = 79/270 (29%), Gaps = 24/270 (8%)
Query: 1 MATESQAAIRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA 59
+ +S + I I+G I R +I N L A ASR
Sbjct: 18 LYFQSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTVE-----------GV 66
Query: 60 KVYGSYEALLD-DKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILN 118
Y + EA+LD + IDAV L +P + A KH+ +EKP ++E +
Sbjct: 67 NSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEA 126
Query: 119 ACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVK 178
+ G L + P K F++ + + +
Sbjct: 127 LANKQGASLFASWHSRYAPAVEAAKAFLAS-TTIKSVHVIWKEDVRHWH-----PNQDWI 180
Query: 179 PDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238
G + D G + + P + ++ DG
Sbjct: 181 WQAGG-LGVFDPGINALSIVTHILP--RPVFITGAVLEFPENRDAPIAADIHFRDADGLP 237
Query: 239 ATFSCSFLAN--MTMDITATGTNGSLQLHD 266
+ + DI A G + L +
Sbjct: 238 VHAEFDWRQTGKQSWDIVAETAAGQMVLSE 267
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} Length = 337 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 6e-50
Identities = 61/365 (16%), Positives = 126/365 (34%), Gaps = 49/365 (13%)
Query: 9 IRFGIIGAADIARKLSRAITLAPN--AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
++ +IG++ R + + + V L K K Y ++
Sbjct: 3 LKICVIGSSGHFRYALEGLDEECSITGIAPGVPEEDLSKLEKAISE--MNIKPKKYNNWW 60
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE--NG 124
+L+ + D + + S++ K + ++K H +EKP+A + + I + ++ N
Sbjct: 61 EMLEKEKPDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120
Query: 125 VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
V + P K+ VS+ G++R +++ S+ + D K + G
Sbjct: 121 VFFTAMFGIRYRPHFLTAKKLVSE-GAVGEIRLVNTQKSYKLGQ---RPDFYKKRETYG- 175
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVIL--SCGASLHWDDGRVATFS 242
G + G + I I W + +V A H + N L + ++ A+ S
Sbjct: 176 GTIPWVGIHAIDWIHWITGKK-FLSVYATHSRLHNSGHGELETTALCHFTLENEVFASLS 234
Query: 243 CSFLANMTMD------ITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPL 296
+L + GT G +++ N R F D
Sbjct: 235 IDYLRPQGAPTHDDDRMRIVGTRGIVEV---------------INERVFLTD-------- 271
Query: 297 PSEHVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFE 356
+ + ++ + +F + I+ K P S T I + S + G +
Sbjct: 272 -EKGHREVPLVEKGQIFEDF---LREIRGQGKCMVT-PEDSILTTEIALKARLSADTG-Q 325
Query: 357 PIEIK 361
+ I+
Sbjct: 326 IVLIE 330
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* Length = 354 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-49
Identities = 62/361 (17%), Positives = 126/361 (34%), Gaps = 33/361 (9%)
Query: 9 IRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IRF ++G IA A+ A A L V + A+ + S
Sbjct: 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTG----ARGHASLTD 69
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
+L D D V L P+ +H +I ++ H++ EKPMA + ++ A ++ L
Sbjct: 70 MLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHL 129
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAE-FLKNDIRVKPDLDGLGA 186
N +K + + +RFG++ ++ + E + R + DG GA
Sbjct: 130 FVVKQNRRNATLQLLKRAMQE-KRFGRIYMVNVNVFWTRPQEYYDAAGWRGTWEFDG-GA 187
Query: 187 LGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 246
+ + + + W ++V A + V + S+ W G + + + + L
Sbjct: 188 FMNQASHYVDLLDWLIGP--VESVQAYTATLARNIEVEDTGTVSVKWRSGALGSMNVTML 245
Query: 247 A---NMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVT 303
N+ IT G GS+++ + F++ + T
Sbjct: 246 TYPKNLEGSITILGEKGSVRVGGV---------AVNEIQHWEFSEPHAMDEEIKDASYAT 296
Query: 304 TDIPQEACMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTSIERGFEPIE 359
T + + ++ ++ + P K+ ++ A+ S G +
Sbjct: 297 TSVYGFG-HPLYYDNVIKTMRGEAT-----PETDGREGLKSLELLIAMYLSARDG-RRVS 349
Query: 360 I 360
+
Sbjct: 350 L 350
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Length = 359 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-46
Identities = 55/364 (15%), Positives = 116/364 (31%), Gaps = 37/364 (10%)
Query: 5 SQAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG 63
S + I+ G++G ++ L ++ + + A LE+A + D V
Sbjct: 2 SLSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFI---SDIPVLD 58
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123
+ A+L+ +DAV + P +H + + K ++ +EKP + E + +++A +
Sbjct: 59 NVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRS 118
Query: 124 GVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRV---KPD 180
V G + Q++E FG+ + N R D
Sbjct: 119 DVVSGVGMNFKFARPVRQLREMTQVD-EFGETLHIQ--------LNHYANKPRAPLWGLD 169
Query: 181 LDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240
L + I + D E + V + + V A + + G A+
Sbjct: 170 STLRSFLLAQAIHTIDLAITFGDGE-LRRVQSSVQRHDDALIVR----ADMAFSSGATAS 224
Query: 241 FSCSFLANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSE 299
D+ ++ +L D + E + T W P P +
Sbjct: 225 LLAGTSFPYFEFDMKLVSSSSTLVELDNLWNITLHEPEHATRPTGAAKRWRGAWQPGPLD 284
Query: 300 HVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTSIERGF 355
+ +F I+ + E T +I+ + ++
Sbjct: 285 SGYERS--GYHGELHQF---FQAIREHRRFE-----ADFASLLPTYRVIEEICSADAVA- 333
Query: 356 EPIE 359
+ ++
Sbjct: 334 QGLQ 337
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Length = 387 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 1e-44
Identities = 58/262 (22%), Positives = 104/262 (39%), Gaps = 11/262 (4%)
Query: 9 IRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
IRFGI G L A+ P+A + A + + F K V+ +
Sbjct: 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYG----IPVFATLAE 58
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
++ +DAVY+ P H + + +++ H+++EKP+ L+ E D ++ A E GV L
Sbjct: 59 MMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHL 118
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGAL 187
+ GT H+P ++ V + G++ ++ CF++ + + G G +
Sbjct: 119 VVGTSRSHDPVVRTLRAIVQE-GSVGRVSMLN-CFNYTDFLYRPRRPEELDTSKGG-GII 175
Query: 188 GDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLA 247
+ + I SI V AM G + + +C A L +DG A S
Sbjct: 176 YNQLPHQIDSIKTITGQR-ITAVRAMTGRLDPKRPTEGNCAAMLTLEDGACAVMVYSGYD 234
Query: 248 NMTMDITA--TGTNGSLQLHDF 267
+ D G + +
Sbjct: 235 HFDSDEMHFWLAEGGRAKQPNH 256
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} Length = 345 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 2e-44
Identities = 51/354 (14%), Positives = 104/354 (29%), Gaps = 25/354 (7%)
Query: 9 IRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
I IG + + ++ A R K A +
Sbjct: 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIY---SHIHFTSDLDE 59
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
+L+D D+ V + H ++A + K++L+EKP +A+ + + G+ +
Sbjct: 60 VLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTV 119
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGAL 187
+ K+ + + G++ + S F + KP L GA
Sbjct: 120 TPYQNRRFDSCFLTAKKAIES-GKLGEIVEVESHFDYYRPVA------ETKPGLPQDGAF 172
Query: 188 GDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLA 247
G + + I+ P V + N+A + A L + D + + +
Sbjct: 173 YGLGVHTMDQIISLFG--RPDHVAYDIRSLRNKANPDDTFEAQLFYGDLKAIVKTSHLVK 230
Query: 248 NMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH--VVTTD 305
G GS + +A+ F D G + ++ V +
Sbjct: 231 IDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGVLEYVNDEGVTVREE 290
Query: 306 IPQEACMVREFSRLVAN-IKNGS----KPEQKWPIISRKTQLIIDAVKTSIERG 354
+ E + I +G+ K + I++
Sbjct: 291 MKPEMGDYGRVYDALYQTITHGAPNYVKESE-----VLTNLEILERGFEQASPS 339
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Length = 352 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 4e-44
Identities = 60/353 (16%), Positives = 117/353 (33%), Gaps = 24/353 (6%)
Query: 9 IRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
I+ G++G ++ + I P L+ V+S K P V +
Sbjct: 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADW------PAIPVVSDPQM 61
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
L +D ID + +P P H A S KH++++KP + +++ + + ++ G+ L
Sbjct: 62 LFNDPSIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLL 121
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGAL 187
+ +K +++ G + S F ++ R + G G
Sbjct: 122 SVFHNRRWDSDFLTLKTLLAE-GSLGNVVYFESHFDRYRPE--IRQRWREQAGAGG-GIW 177
Query: 188 GDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLA 247
D G + + L LP+T+ G + + + A L + RV S A
Sbjct: 178 YDLGPHLLDQALQLFG--LPETLNVDLGMLRPGSQSVDYFHAVLSYPGQRVVLHSTVLAA 235
Query: 248 NMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPL-PSEHVVTTDI 306
T GT GS +A + D+ G V L + +
Sbjct: 236 AETARYIVHGTQGSYIKFGVDPQEDRLKAGERLPQADWGYDMRDGIVTLSHDNVLTEKPL 295
Query: 307 PQEACMVREFSRLVAN-IKNGS----KPEQKWPIISRKTQLIIDAVKTSIERG 354
+ + + I + + + K +I+ S ++
Sbjct: 296 LTLPGNYPAYYAGIRDAIWGTAPNPVPATE-----AIKVMELIELGIASDQQK 343
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} Length = 336 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 8e-44
Identities = 57/359 (15%), Positives = 99/359 (27%), Gaps = 43/359 (11%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IRF IG A + A L+ V + F P S E L
Sbjct: 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLF---PSVPFAASAEQL 61
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
+ D ID + + + A+ K KP + + D + E G +
Sbjct: 62 ITDASIDLIACAVIPCDRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121
Query: 129 DGTMWVHNPRTAQM-KEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGAL 187
N +A E V G++ + D + G G L
Sbjct: 122 VYFNERINVDSALFAGELVQR-GEIGRVIQTMGVGPHRERG--ARPDWFYQKRQYG-GIL 177
Query: 188 GDAGWYGIRSILWANDYELPKTVIAMHGPVLN--EAGVILSCGASLHWDDGRVATFSCSF 245
D G + I L+ + V + + A L D+G F C +
Sbjct: 178 CDIGIHQIEQFLYFTGNTNARVVTSQTANYHHPHHPEFEDFGDAMLLGDNGATGYFRCDW 237
Query: 246 LANMTMD------ITATGTNGSLQLHDFIIPFREE-EASYFTNTRCFFNDLVTGWVPLPS 298
+ +T GT G +++ ++ R E Y N + G V
Sbjct: 238 FTPDGLSVWGDGRLTILGTEGYIEIRKYVDLTRGESNVVYLVNGKGEQRFTPAGSVERA- 296
Query: 299 EHVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTSIER 353
F + + + ++ +S K + + + +
Sbjct: 297 ----------------FFPDFLRDCRERTE-----NAMSQSHIFKATELSILAQQAANK 334
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} Length = 361 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 2e-43
Identities = 57/359 (15%), Positives = 110/359 (30%), Gaps = 41/359 (11%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
+RF +G L A L+ + A F+ DA+ + E +
Sbjct: 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY---ADARRIATAEEI 83
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
L+D++I + +S + AI Q K +L++KP + + + E G
Sbjct: 84 LEDENIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFS 143
Query: 129 DGTMW-VHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGAL 187
+P T + E V+ G++ + E + D + G G L
Sbjct: 144 ILYSEHFESPATVKAGELVAA-GAIGEVVHIVGLGPHRLRRE-TRPDWFFRRADYG-GIL 200
Query: 188 GDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHW-DDGRVATFSCSFL 246
D + L+ + A G L S+H ++L
Sbjct: 201 TDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTTGMIHVNWL 260
Query: 247 ANMTMD------ITATGTNGSLQLHDFIIPFREE-EASYFTNTRCFFNDLVTGWVPLPSE 299
M + GT+G++++ + E F R + V LP
Sbjct: 261 TPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNGVEHIDCSRVDLP-- 318
Query: 300 HVVTTDIPQEACMVREFSRLVANIKNGSKP----EQKWPIISRKTQLIIDAVKTSIERG 354
+ +A+I++ ++ E+ K + + E+
Sbjct: 319 ---------------FGRQFLADIRDRTETAMPQER-----CFKAMELALQAQAIAEQN 357
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Length = 364 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 2e-42
Identities = 65/360 (18%), Positives = 120/360 (33%), Gaps = 26/360 (7%)
Query: 1 MATESQAAIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA 59
M+ S I +IG + + + I P L+ VASR EK PD
Sbjct: 1 MSL-SNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDL------PDV 53
Query: 60 KVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
V S EA + D+D V + P + H A KH++++KP L++ E ++
Sbjct: 54 TVIASPEAAVQHPDVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIAL 113
Query: 120 CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKP 179
EE L + +++ + G ++ S F ++ R +
Sbjct: 114 AEEKQRLLSVFHNRRWDSDYLGIRQVIEQ-GTLGAVKHFESHFDRFRPE--VRVRWREQN 170
Query: 180 DLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239
G D G + I L LP++V + + A + L++ +V
Sbjct: 171 VPGS-GLWFDLGPHLIDQALQLFG--LPQSVQGNIATLRDGAEINDWAHVVLNYPAHKVI 227
Query: 240 TFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSE 299
+A + T G GS+ + A + + D +
Sbjct: 228 LHCSMLVAGGSSRFTVHGDKGSVIKARADQQESQLLAGVVPGSADWGQDDDPLV--IYDA 285
Query: 300 HVVTTDIPQEACMVREFSRLVAN-IKNGS----KPEQKWPIISRKTQLIIDAVKTSIERG 354
+ R++ L+ + +K P + + +++A S E G
Sbjct: 286 SLQAHAQATPQGDQRQYYMLIRDALKGQIANPVPPVE-----ALAVMAVLEAAVRSAESG 340
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} Length = 359 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 5e-42
Identities = 73/373 (19%), Positives = 130/373 (34%), Gaps = 39/373 (10%)
Query: 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
S + I+G + + A N + V EK A+ K+Y S
Sbjct: 2 SLKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQ-----KGLKIYES 56
Query: 65 YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124
YEA+L D+ +DAV + P H + AIS + KH++ EKP+ + + I++ +
Sbjct: 57 YEAVLADEKVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVN 116
Query: 125 VQLMDGTMWVHNPR----TAQMKEFVSDPQRFGQLRTMHSCF-SFAGDAEFLKNDIRVKP 179
M N R +KE + G++ + S G D R
Sbjct: 117 KHFMVH----QNRRWDEDFLIIKEMFEQ-KTIGEMFHLESRVHGANGI----PGDWRHLK 167
Query: 180 DLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239
G G + D G + + +L+ D K+V A L + V + +++G A
Sbjct: 168 AHGG-GMVLDWGVHLLDQLLFLVDSN-VKSVSANLSFALGDE-VDDGFVTFITFENGITA 224
Query: 240 TFSCSFLANMTMD-ITATGTNGSLQLHDFIIPFREEEASYFTNTRCFF-----NDLVTGW 293
+ + GT G+ +HD+ + + + T L
Sbjct: 225 QIEVGTTNFIKLPRWYVKGTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQGLTKTM 284
Query: 294 VPLPSEHVVTTDIPQEACMVREFSRLVAN-IKNGS----KPEQKWPIISRKTQLIIDAVK 348
P E T +P A + F + + N S + E+ + +I+A+
Sbjct: 285 APPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPIVQNEE-----VYQVLKLIEAIF 339
Query: 349 TSIERGFEPIEIK 361
+ E +
Sbjct: 340 EAAETN-RTVHSI 351
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} Length = 362 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 4e-41
Identities = 61/374 (16%), Positives = 121/374 (32%), Gaps = 38/374 (10%)
Query: 5 SQAAIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG 63
S I+ G+ + + I+ P+ L + RS E + P A +
Sbjct: 2 SLEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKERY------PQASIVR 55
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123
S++ L +D +ID + + P + H ++A + K++++EKP + + ++ ++
Sbjct: 56 SFKELTEDPEIDLIVVNTPDNTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKK 115
Query: 124 GVQLMDGTMWVHN----PRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKP 179
G+ L N +++ ++ G+L S F+ + N +
Sbjct: 116 GLMLSVY----QNRRWDADFLTVRDILAK-SLLGRLVEYESTFARYRN-FIKPNTWKETG 169
Query: 180 DLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDD---G 236
+ G G + G + I + +P+ V A G + V L
Sbjct: 170 ESGG-GLTYNLGSHLIDQAIQLFG--MPEAVFADLGILREGGKVDDYFIIHLLHPSLAPN 226
Query: 237 RVATFSCSFL-ANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVP 295
T S+L GT GS + A + + W
Sbjct: 227 VKITLKASYLMREAEPRFALHGTLGSYVKYGVDKQEAALLAGEIPERPNWGEESEQEWGL 286
Query: 296 LPSEH---VVTTDIPQEACMVREFSRLVAN-IKNGS----KPEQKWPIISRKTQLIIDAV 347
L +E + P A F + + + G + II+A
Sbjct: 287 LHTEINGKEICRKYPGIAGNYGGFYQNIYEHLCLGQPLETHAQD-----ILNVIRIIEAA 341
Query: 348 KTSIERGFEPIEIK 361
S + + +K
Sbjct: 342 YQSHREN-KIVNLK 354
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A Length = 358 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 5e-40
Identities = 65/367 (17%), Positives = 125/367 (34%), Gaps = 27/367 (7%)
Query: 5 SQAAIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG 63
S I+ GI+G + + +S + + E+ +FP DA+V
Sbjct: 2 SLDTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV-----KRDFP-DAEVVH 55
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123
E + +D I+ V + P+ +H + ++ Q KH++MEKPM E + + A +E
Sbjct: 56 ELEEITNDPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEK 115
Query: 124 GVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDG 183
GV L + +K+ +S+ + T ++ ++ R K
Sbjct: 116 GVLLSVYHNRRWDNDFLTIKKLISE-GSLEDINTYQVSYNRYRPE--VQARWREKEGTAT 172
Query: 184 LGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSC 243
G L D G + I L +PK V A A + +L + + +
Sbjct: 173 -GTLYDLGSHIIDQTLHLFG--MPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGG 229
Query: 244 SFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGW---VPLPSEH 300
S + G + S + A + D+ + +
Sbjct: 230 SIVPANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSD 289
Query: 301 VVTTDIPQEA-CMVREFSRLVANIKNGS----KPEQKWPIISRKTQLIIDAVKTSIERGF 355
T IP + + ++ +I+ G+ E+ II+A S +
Sbjct: 290 KKTETIPSVNGSYLTYYRKIAESIREGAALPVTAEE-----GINVIRIIEAAMESSKEK- 343
Query: 356 EPIEIKW 362
I ++
Sbjct: 344 RTIMLEH 350
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Length = 349 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 6e-40
Identities = 48/366 (13%), Positives = 103/366 (28%), Gaps = 36/366 (9%)
Query: 9 IRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
++ G IG A + + + + + + +
Sbjct: 3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKE---KGVNFTADLNE 59
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
LL D +I+ + + P H A K +++EKP + + + +E GV +
Sbjct: 60 LLTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVV 119
Query: 128 MDGTMWVHN----PRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDG 183
M N MK+ V G++ + + + + I + +
Sbjct: 120 MPY----QNRRFDGDYLAMKQVVEQ-GFLGEINEVETHIDY-----YRPGSITEQGPKEN 169
Query: 184 LGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSC 243
G+ G + + ++ P V V LH+
Sbjct: 170 -GSFYGLGIHLMDRMIALFG--RPDQVTYDIRNNEVSEAVDNYFDVDLHYGSKLKVKVKT 226
Query: 244 SFLANMTMD-ITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH-- 300
+ G+NGS + + +A + F D + + +
Sbjct: 227 NHSVASPYPRFIVHGSNGSFIKYGEDQQENDLKAGIMPDAPGFGEDSPMYYGEVTYRNGN 286
Query: 301 --VVTTDIPQEACMVREFSRLVAN-IKNGS----KPEQKWPIISRKTQLIIDAVKTSIER 353
+ I + V +KNG+ EQ + I++A +
Sbjct: 287 GDWIKKQIKTPVGDYGRYYDAVYETLKNGAPQLVTKEQ-----ALTNIEILEAGFLNPSP 341
Query: 354 GFEPIE 359
++
Sbjct: 342 SVYHLK 347
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* Length = 294 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 9e-37
Identities = 37/268 (13%), Positives = 78/268 (29%), Gaps = 30/268 (11%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK 60
M T S ++G R + +A + + +
Sbjct: 1 MITNSGK-FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE--LGSLDEVR---- 53
Query: 61 VYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNAC 120
S E L ++ID Y+ +S H + Q KH+L+E PM L+ A +
Sbjct: 54 -QISLEDALRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELA 112
Query: 121 EENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPD 180
+ G L + + + ++ V +L F+ + E
Sbjct: 113 AQKGRVLHEEHVELLMEEFEFLRREVLG----KELLKGSLRFTASPLEE----------- 157
Query: 181 LDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240
+ G +G + ++ + A + + L + + +
Sbjct: 158 -ERFGFPAFSGISRLTWLVSLFG--ELSLISATLEER--KEDQYMKMTVQLETQNKGLLS 212
Query: 241 FSCSFLANMTMDITAT--GTNGSLQLHD 266
+ + + T+GSL+
Sbjct: 213 WIEEKGPGLKRNRYVNFQFTSGSLEEVP 240
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 Length = 323 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-36
Identities = 56/352 (15%), Positives = 113/352 (32%), Gaps = 53/352 (15%)
Query: 9 IRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
++ +IG DIA+K + P+ L + +R+ + A Y
Sbjct: 3 LKIAMIGLGDIAQKAYLPVLAQWPDIEL-VLCTRNPKVLGTLATRYRVS---ATCTDYRD 58
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
+L +DAV + T +H A ++KP+A + E + + E++ L
Sbjct: 59 VLQY-GVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL 117
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGAL 187
G H P Q ++ G LR++ R D +
Sbjct: 118 YVGFNRRHIPLYNQHLSELAQQ-ECGALRSLRWEKH------------RHALPGDIRTFV 164
Query: 188 GDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGR-VATFSCSFL 246
D + + S+ + + +H G++ + W G + S +
Sbjct: 165 FDDFIHPLDSVNLSRQCN----LDDLHLTYHMSEGLLAR--LDVQWQTGDTLLHASMNRQ 218
Query: 247 ANMTMD-ITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTD 305
+T + +TA+ N + F + D V L +
Sbjct: 219 FGITTEHVTASYDNVAYLFDSF-------------TQGKMWRDNQESRVALKDWTPMLAS 265
Query: 306 IPQEACMVREFSRLVANIKNGSKP----EQKWPIISRKTQLIIDAVKTSIER 353
+A MV+++ + G P E+ + + + +A+ I +
Sbjct: 266 KGFDA-MVQDW---LQVAAAGKLPTHIIER-----NLASHQLAEAICQQITQ 308
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Length = 383 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-36
Identities = 58/400 (14%), Positives = 114/400 (28%), Gaps = 62/400 (15%)
Query: 5 SQAAIRFGIIGAADIAR-----KLSRAIT------------LAPNAVLSAVASRSLEKAT 47
S R G+I R L R+I + RS EK
Sbjct: 1 SLTTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVE 60
Query: 48 NFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMA 107
AK N + +A L DK+ + T KH+ EKP+A
Sbjct: 61 ALAKRFNIA---RWTTDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIA 117
Query: 108 LNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD 167
N E ++ GV+ + P ++ FG++ ++ F +
Sbjct: 118 TNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFLRDS-GFFGRILSVRGEFGYWVF 176
Query: 168 AEFLKNDIRVKPDLD---GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVI 224
+ R + G G + D + + ++V+ + + E
Sbjct: 177 EGGWQEAQRPSWNYRDEDGGGIILDMVCHWRYVLDNLFGN--VQSVVCIGNTDIPERFDE 234
Query: 225 L----------SCGASLHWDDGRVATFSCSFLA----NMTMDITATGTNGSLQLHD---F 267
S A+ + G +A + S++ + + GT+GS
Sbjct: 235 QGKKYKATADDSAYATFQLEGGVIAHINMSWVTRVYRDDLVTFQVDGTHGSAVAGLSDCM 294
Query: 268 IIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKNGS 327
I + + +D W LP + + ++ + ++ +
Sbjct: 295 IQARQATPRPVWNPDEKRLHDFYGDWQKLPDN------VSYDNGFKEQWEMFIRHVYEDA 348
Query: 328 KPEQKWPIIS----RKTQLIIDAVKTSIERG----FEPIE 359
+ + K + + S + PI+
Sbjct: 349 PYK-----FTLLEGAKGVQLAECALKSWKERRWIDVAPIK 383
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 Length = 319 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 6e-35
Identities = 58/357 (16%), Positives = 113/357 (31%), Gaps = 56/357 (15%)
Query: 5 SQAAIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG 63
S +R G++G IA+K + A + L S + KA ++
Sbjct: 2 SLKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR----IPYAD 57
Query: 64 SYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123
S +L DAV++ T+ H ++ H+ ++KP+A N+ + + ++
Sbjct: 58 SLSSLAAS--CDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARK 115
Query: 124 GVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDG 183
+ LM G P ++K ++ ++ K+ D
Sbjct: 116 KLTLMVGFNRRFAPLYGELKTQLATA-ASLRMD---------------KHRSNSVGPHDL 159
Query: 184 LGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSC 243
L D + + + LW + K + + N+AG +L A H+ G + +C
Sbjct: 160 YFTLLDDYLHVVDTALWLSG---GKASLDGGTLLTNDAGEMLF--AEHHFSAGPLQITTC 214
Query: 244 SFLANMTMD--ITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHV 301
+ + A + + D E P+P
Sbjct: 215 MHRRAGSQRETVQAVTDGALIDITDMREWREERGQGVVHK-------------PIPGWQS 261
Query: 302 VTTDIPQEACMVREFSRLVANIKNGSKP----EQKWPIISRKTQLIIDAVKTSIERG 354
R F + ++N + P EQ + Q I+D +
Sbjct: 262 TLEQRGFVG-CARHF---IECVQNQTVPQTAGEQ-----AVLAQRIVDKIWRDAMSE 309
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A Length = 438 | Back alignment and structure |
|---|
Score = 130 bits (327), Expect = 3e-34
Identities = 57/421 (13%), Positives = 128/421 (30%), Gaps = 75/421 (17%)
Query: 1 MATESQAAIRFGIIGAAD----IARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNF 55
+ A IR G +G + AI L+ ++A+ S +E + +
Sbjct: 13 STVPNAAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKL 72
Query: 56 PPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKK------HLLMEKPMALN 109
+A + + E+ ID + + + + H + + + + K +L +E +A +
Sbjct: 73 S-NATAFPTLESFASSSTIDMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACS 131
Query: 110 VAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLR--TMHSCFSFAGD 167
+ + + I A E GVQ + +P + KE +S G + + + G
Sbjct: 132 LDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELISQ-GYIGDINSIEIAGNGGWYGY 190
Query: 168 AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAM-------------- 213
+K+ + +G+ + + I + + + AM
Sbjct: 191 ERPVKSPKYIYEIGNGVDLVTTTFGHTIDILQYMTS-SYFSRINAMVFNNIPEQELIDER 249
Query: 214 ------HGPVLNEAGVILSC-------GASLHWDDGRVATFSCSFLANMTMDITATGTNG 260
P ++ S + G+ F N+ +DI GT
Sbjct: 250 GNRLGQRVPKTVPDHLLFQGTLLNGNVPVSCSFKGGKPTK---KFTKNLVIDI--HGTKR 304
Query: 261 SL---------QLHDFIIPFREEEASYFTNTRCFFN------DLVTGWVPLPSEHVVTTD 305
L ++ + ++ + A+ F D + +
Sbjct: 305 DLKLEGDAGFAEISNLVLYYSGTRANDFPLANGQQAPLDPGYDAGKEIMEVYHLRNYNAI 364
Query: 306 IPQEACMVREFSRLVANIKNGSKPEQKWPIISR------------KTQLIIDAVKTSIER 353
+ + + S N K + ++ + +I++V S
Sbjct: 365 VGNIHRLYQSISDFHFNTKKIPELPSQFVMQGFDFEGFPTLMDALILHRLIESVYKSNMM 424
Query: 354 G 354
G
Sbjct: 425 G 425
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} Length = 393 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-32
Identities = 63/386 (16%), Positives = 123/386 (31%), Gaps = 48/386 (12%)
Query: 1 MATESQAAIRFGIIGAADIA-------RKLSRAITLAPNAVLSAVASRSLEKATNFAKAN 53
+ +S + G+IG + + L +A + A A
Sbjct: 18 LYFQSMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF 77
Query: 54 NFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEF 113
F K + AL+ D ++D V + P H + AI+ + KH+ EKPMA A+
Sbjct: 78 GFE---KATADWRALIADPEVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADA 134
Query: 114 DVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF--SFAGDAEFL 171
+ +L E +G G ++ NP +++ V D G++ + F D +
Sbjct: 135 ERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGD-GVIGRVNHVRVEMDEDFMADPDI- 192
Query: 172 KNDIRVKPDLD-GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVIL----- 225
K +L G GAL D + + + + + + VI + +
Sbjct: 193 --FFYWKSELSAGYGALDDFAVHPLSLLWYLFGH--VEAVITDMVKPYPDRPLSEGGRRA 248
Query: 226 -----SCGASLHWDDGRVATFSCSFLA---NMTMDITATGTNGSL-----QLHDFIIPFR 272
+ + D G A + A + + G+ GS+ ++++F +
Sbjct: 249 VENHDAANVLMRLDGGISAVLMANRAAWGRKGRIALQIYGSKGSILYDQERMNEFELYQA 308
Query: 273 EEEASYFTNTRCFFNDLVTGWVPL--PSEHVVTTDIPQEACMVREFSRLVANIKNGSKPE 330
E S + + H + + E L+ I
Sbjct: 309 EGPGSEQGFRKILAAPAHRPYDRFIPAPGHG----LGFNDLKIIECRELIRAITGEPSS- 363
Query: 331 QKWPIIS--RKTQLIIDAVKTSIERG 354
+ + + A+ S
Sbjct: 364 --IVTFKDGLRIEKSVHAMAQSFHER 387
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} Length = 344 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 3e-31
Identities = 64/372 (17%), Positives = 129/372 (34%), Gaps = 59/372 (15%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
+R G+IG I + + + +A+L A++ ++ + K Y L
Sbjct: 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVE---KAYKDPHEL 59
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
++D ++DAV + T+ H + I+ A+ KKH+ EKP++LN+A+ D ++ ++ V L
Sbjct: 60 IEDPNVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILF 119
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF--SFAGDAEFLKNDIRVKPDLDGLGA 186
G + ++KE V + G+ + ++++ G
Sbjct: 120 TGFNRRFDRNFKKLKEAVEN-GTIGKPHVLRITSRDPAPPPLDYIR---------VSGGI 169
Query: 187 LGDAGWYGIRSILWANDYELPKTVIAMHG----PVLNEAGVILSCGASLHWDDGRVATFS 242
D + + E + V A + +AG + + L + G +
Sbjct: 170 FLDMTIHDFDMARYIMGEE-VEEVFADGSVLVDEEIGKAGDVDTAVVVLRFKSGALGVID 228
Query: 243 CSFLANMTMDIT--ATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH 300
S A D G+ G + N T V +
Sbjct: 229 NSRRAVYGYDQRIEVFGSKGRIFAD---------------------NVRETTVVLTDEQG 267
Query: 301 VVTTDIPQ------EACMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTS 350
+ + E + N+K+G P +S + L+ A K S
Sbjct: 268 DRGSRYLYFFLERYRDSYLEELKTFIKNVKSGEP-----PAVSGEDGKMALLLGYAAKKS 322
Query: 351 IERGFEPIEIKW 362
+E ++++
Sbjct: 323 LEEK-RSVKLEE 333
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} Length = 344 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 3e-31
Identities = 60/366 (16%), Positives = 110/366 (30%), Gaps = 48/366 (13%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
+R + GA I + I P+ L +A +E A A+AN A+ S + +
Sbjct: 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANG----AEAVASPDEV 60
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
DID + + PTS HV ++ L EKP+ L++ + ++M
Sbjct: 61 FARDDIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVM 120
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFGQLRTMH--SCFSFAGDAEFLKNDIRVKPDLDGLGA 186
G +P A + V++ Q G L + S +++ G
Sbjct: 121 LGFNRRFDPSFAAINARVAN-QEIGNLEQLVIISRDPAPAPKDYIA---------GSGGI 170
Query: 187 LGDAGWYGIRSILWANDYELPKTVIAMHG----PVLNEAGVILSCGASLHWDDGRVATFS 242
D + + + V A + E +L G +
Sbjct: 171 FRDMTIHDLDMARFFVPN--IVEVTATGANVFSQEIAEFNDYDQVIVTLRGSKGELINIV 228
Query: 243 CSFLANMTMDIT--ATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH 300
S + D A G+ G L + T R + P+ +
Sbjct: 229 NSRHCSYGYDQRLEAFGSKGMLAADNIRP----------TTVRKHNAESTEQADPIFNFF 278
Query: 301 VVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTSIERGFE 356
+ A E + I++G + + +A S + G
Sbjct: 279 ---LERYDAA-YKAELATFAQGIRDGQG-----FSPNFEDGVIALELANACLESAQTG-R 328
Query: 357 PIEIKW 362
+ +
Sbjct: 329 TVTLNP 334
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} Length = 346 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 4e-31
Identities = 68/381 (17%), Positives = 127/381 (33%), Gaps = 57/381 (14%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDA 59
M T + +R IIG + + +R + L A + +
Sbjct: 2 MVTTRKP-LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVE--- 57
Query: 60 KVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
Y +Y+ ++D ++IDA+++ PT H + I ++ EKP+ L+ E D +
Sbjct: 58 TTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKV 117
Query: 120 CEENGVQL-MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMH--SCFSFAGDAEFLKNDIR 176
+ + Q+ G M ++ K+ V + G++ M +G F +
Sbjct: 118 IKSHPNQIFQSGFMRRYDDSYRYAKKIVDN-GDIGKIIYMRGYGIDPISGMESF----TK 172
Query: 177 VKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAM----HGPVLNEAGVILSCGASLH 232
+ D G D + I I W + P + P L + G + A L
Sbjct: 173 FATEADSGGIFVDMNIHDIDLIRWFTGQD-PVQAYGLTSNIAAPQLADIGEFETGVAQLK 231
Query: 233 WDDGRVATFSCSFLANMTMDIT--ATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLV 290
DG +AT A + G+NG +++
Sbjct: 232 MSDGVIATLIGGRHAAHGNQVELEVMGSNGWVRIG---------------------EHPD 270
Query: 291 TGWVPLPSEHVVTTDIPQ------EACMVREFSRLVANIKNGSKPEQKWPIIS----RKT 340
V + ++ V Q + E V N+ G + P ++ K
Sbjct: 271 LNRVTVFNDQGVVRPSLQSFGERFDTAFTDEVQDFVNNVIVGKQ-----PEVTVDDGIKA 325
Query: 341 QLIIDAVKTSIERGFEPIEIK 361
I A + S G + ++I+
Sbjct: 326 LKIAKACQQSANIG-KLVDIQ 345
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} Length = 308 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-31
Identities = 50/352 (14%), Positives = 111/352 (31%), Gaps = 58/352 (16%)
Query: 9 IRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
I+ G+IG IA+K +T + + + K + S E+
Sbjct: 7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR----IMPFDSIES 62
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
L D ++L T H + + H+ ++KP+A V++ + ++ + + L
Sbjct: 63 LAKK--CDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNL 120
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGAL 187
M G P ++K ++ K+ + ++ L
Sbjct: 121 MVGFNRRFCPMYKEIKNNATEIVSI----------------NICKHGLNSLRNVRFDSTL 164
Query: 188 GDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLA 247
D + I + LW + + L + ++ L + + T S +
Sbjct: 165 IDDYIHVIDTALWLANE--DVEISGEDL-FLTDNKNLIFVSHKLKGKNFSINT-SMHRDS 220
Query: 248 NMTMD-ITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDI 306
++ + ++ + EE G + L +
Sbjct: 221 GTKLEQVEILSKGKIQRV-KNLNVLEIEEG---------------GNLTLKQSGAWVNIL 264
Query: 307 PQEA--CMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTSIE 352
Q+ + F + I+N K P I+ K Q +++ + S++
Sbjct: 265 KQKGFEDISNHF---IDCIENNIK-----PAINGEECIKAQRLLEKIINSVK 308
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} Length = 357 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-30
Identities = 62/358 (17%), Positives = 109/358 (30%), Gaps = 38/358 (10%)
Query: 9 IRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
++ GI+G I R + + AV +A + +AK Y Y
Sbjct: 24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDK--YAIEAKDYNDYHD 81
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
L++DKD++ V + H A++ K++ EKP+A+ A+ ++ A ++NG ++
Sbjct: 82 LINDKDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141
Query: 128 -MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGA 186
G M ++ Q+K + GQ +H A K A
Sbjct: 142 VQIGFMRRYDKGYVQLKNIIDS-GEIGQPLMVHGRHYNASTVPEYKTP----------QA 190
Query: 187 LGDAGWYGIRSILWANDYELPKTVIAM-HGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245
+ + + I + W + + KTV + + G
Sbjct: 191 IYETLIHEIDVMHWLLNED-YKTVKVYFPRQSSLVTTLRDPQLVVMETTSGINIVVEVFV 249
Query: 246 LANMTMDIT--ATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVT 303
DI TG G +L + A Y T+ +
Sbjct: 250 NCQYGYDIHCDVTGEKGMAELPTVASAAVRKAAKYSTDILVDWKQRF------------- 296
Query: 304 TDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361
EF + G P + DA S E G ++
Sbjct: 297 -----IDAYDIEFQDFFDRLNAGLPPAGPTSWDGYLAAVTADACVKSQETG-NTEIVE 348
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} Length = 315 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 9e-30
Identities = 53/329 (16%), Positives = 109/329 (33%), Gaps = 36/329 (10%)
Query: 2 ATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV 61
+ + +R +IGA + R I P A L +AS + + P +
Sbjct: 4 IPANNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVP------PGCVI 57
Query: 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121
+ +++ +++AV + P + H + ++ K +L+EKP+ L++AE + + A +
Sbjct: 58 ESDWRSVVSAPEVEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAK 117
Query: 122 ENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDL 181
GV + + NP +K ++ G + + S + +
Sbjct: 118 ATGVMVWVEHTQLFNPAWEALKADLTS---IGPILAVRS--EAGNHGPYRPGGV------ 166
Query: 182 DGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV-AT 240
L D G + + +L + P + A E + +L V A
Sbjct: 167 ---PMLWDWGAHDVSMVLDLMGRD-PDSTSA-SWAARGEKDGGEAGDVTLTLAFSTVEAH 221
Query: 241 FSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEH 300
+ + G G+L + D T+ G P+ H
Sbjct: 222 IRLCNTMDKCRRLAVFGEAGTLVMDDRA-----------TDKLTLHPPQPDGNWPVGQGH 270
Query: 301 VVTTDIPQEACMVREFSRLVANIKNGSKP 329
+T + E + R ++
Sbjct: 271 ALT--VTDEMPLTRAVRLFAGAVRQPEPG 297
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* Length = 344 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 2e-29
Identities = 58/371 (15%), Positives = 125/371 (33%), Gaps = 61/371 (16%)
Query: 9 IRFGIIGAADIARKLSRAITLA---PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY 65
+R G+IG I ++ + A + AV + E A + + +A VY +
Sbjct: 3 LRIGVIGTGAIGKE--HINRITNKLSGAEIVAVTDVNQEAAQKVVEQ--YQLNATVYPND 58
Query: 66 EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125
++LL D+++DAV + H + + +K++ EKP+A I+ + G
Sbjct: 59 DSLLADENVDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGK 118
Query: 126 QL-MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGL 184
+L G M ++ Q+KE + + G+ +H + V +
Sbjct: 119 RLVQVGFMRRYDSGYVQLKEALDN-HVIGEPLMIHC----------AHRNPTVGDNYTTD 167
Query: 185 GALGDAGWYGIRSILWANDYELPKTVIAMHG----PVLNEAG---VILSCGASLHWDDGR 237
A+ D + I + W + + ++V ++ L +++ + G
Sbjct: 168 MAVVDTLVHEIDVLHWLVNDD-YESVQVIYPKKSKNALPHLKDPQIVV-----IETKGGI 221
Query: 238 VATFSCSFLANMTMDIT--ATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVP 295
V DI G +G ++L + +E + T+ +
Sbjct: 222 VINAEIYVNCKYGYDIQCEIVGEDGIIKLPEPSSISLRKEGRFSTDILMDWQRRF----- 276
Query: 296 LPSEHVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIIS----RKTQLIIDAVKTSI 351
A E + +I+ + + + DA +
Sbjct: 277 -------------VAAYDVEIQDFIDSIQKKGEV----SGPTAWDGYIAAVTTDACVKAQ 319
Query: 352 ERGFEPIEIKW 362
E G + +++
Sbjct: 320 ESG-QKEKVEL 329
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A Length = 479 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-28
Identities = 43/302 (14%), Positives = 109/302 (36%), Gaps = 42/302 (13%)
Query: 1 MATESQAA-IRFGIIGAAD----IARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANN 54
++T + IR G +G +A+ AI + + A+ + +L+ + +
Sbjct: 31 LSTVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ 90
Query: 55 FPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQ------KKKHLLMEKPMAL 108
A + S E+ KDID + + + H + ++ + ++L +E +A
Sbjct: 91 LKH-ATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAA 149
Query: 109 NVAEFDVILNACEEN-GVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS---F 164
+V + + + + ++ +Q + +P + KE +S+ G + ++ + +
Sbjct: 150 SVQQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELISE-GCIGDINSIEISGNGGWY 208
Query: 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAM------HGPVL 218
+ + + G+ + ++ + I + + + + AM +L
Sbjct: 209 GYERPMRSPEYLYDIE-SGVNLISNSFGHTIDVLQYITG-SYFQKINAMISNNIPTQFLL 266
Query: 219 NEAGVIL----------SCGASLHWDDGRVA---TFSCSFLA---NMTMDITATGTNGSL 262
+E G ++G+V +F + I GT G L
Sbjct: 267 DENGKRTKETISKTCPDHLLFQGILENGKVPVSCSFKGGTPVKKLTKNLVIDIHGTKGDL 326
Query: 263 QL 264
++
Sbjct: 327 KI 328
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* Length = 444 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 7e-27
Identities = 37/240 (15%), Positives = 74/240 (30%), Gaps = 16/240 (6%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVA---SRSLEKATNFAKANNFPPDA---KVY 62
+R I + + + + A A + +A K N P
Sbjct: 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGN 80
Query: 63 GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122
Y+ +L DK+IDAV++ P H + ++ + K + ME A+ + E + E+
Sbjct: 81 DDYKNMLKDKNIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140
Query: 123 NGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLD 182
GV LM + + V FG+L + + I K
Sbjct: 141 TGVPLMALENVCYRRDVMAILNMVRK-GMFGELVHGTGGYQHDLRPVLFNSGINGKNGDG 199
Query: 183 GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242
+ G W ++ + + ++ ++ + + S
Sbjct: 200 -----VEFGEKAFSEAKWRTNHYKNRNGELYPTHGVGPLHTMM----DINRGNRLLRLSS 250
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} Length = 318 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-26
Identities = 39/260 (15%), Positives = 81/260 (31%), Gaps = 25/260 (9%)
Query: 9 IRFGIIGAA-DIARKLSRAITLAPNAVLS--------AVASRSLEKATNFAKANNFPPDA 59
F +IGAA IA + RAI N ++S + ++ F + F
Sbjct: 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFL--- 60
Query: 60 KVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
+ S +D V + P +H + + ++ EKP+ D +
Sbjct: 61 -DHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVI 119
Query: 120 CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKP 179
E +L + H+ +K+ V ++ + + + +LK + P
Sbjct: 120 ERETDKRLYNILQLRHHQAIIALKDKV-AREKSPHKYEVDLTYITSRGNWYLK-SWKGDP 177
Query: 180 DLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239
G + G + + + +L + V+ L ++ RV
Sbjct: 178 RKSF-GVATNIGVHFYDMLHFIF-GKLQRNVVHFTSEYKT--------AGYLEYEQARVR 227
Query: 240 TFSCSFLANMTMDITATGTN 259
F ++ +
Sbjct: 228 WFLSVDANDLPESVKGKKPT 247
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Length = 312 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-24
Identities = 45/280 (16%), Positives = 91/280 (32%), Gaps = 34/280 (12%)
Query: 9 IRFGIIGAA-DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
RF + G A IA + +AI +++++ + ++F P+A+ + EA
Sbjct: 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNV-----GLVDSFFPEAEFFTEPEA 58
Query: 68 --------LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
+ +D + + P +H + + L EKP+ L E +
Sbjct: 59 FEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKEL 118
Query: 120 CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKP 179
G ++ +P +KE + ++ + + + + G +V
Sbjct: 119 EARTGRRVYTVLQLRVHPSLLALKERL-GQEKGAKD-VVLTYVTGRGKWYG--KSWKVDE 174
Query: 180 DLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239
G G + G + + W L V A V L + RV
Sbjct: 175 AKSG-GLATNIGIHFFDLLAWLFGRALHVEVHARTPTVNAGY---------LELEGARVR 224
Query: 240 TFSCSFLANMTMDITATG--TNGSLQLH----DFIIPFRE 273
F + + + G T S+ + +F F +
Sbjct: 225 WFLSIDPSFVPEPLRRQGKRTYRSIAVDGEEVEFSEGFTD 264
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} Length = 398 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 54/381 (14%), Positives = 117/381 (30%), Gaps = 44/381 (11%)
Query: 9 IRFGIIGA---ADIARKLSRAITLAPNAVL-SAVASRSLEKATNFAKANNFPPDAKVYGS 64
IR+ ++G + I A VL + + + F + + + Y
Sbjct: 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSE-RCYAD 71
Query: 65 YEALLDD-----KDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
Y ++ + I AV + P H + + H++ EKP+ V + + +
Sbjct: 72 YLSMFEQEARRADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLREL 131
Query: 120 CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDI---- 175
++ + + + Q +E ++ G +R +H F+ + ++
Sbjct: 132 SHKHNRIVGVTYGYAGHQLIEQAREMIAA-GELGDVRMVHMQFAHGFHSAPVEAQSQATQ 190
Query: 176 -RVKPDLDGL-GALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNE-AGVILSCGASLH 232
RV P G LGD G + + K ++ + A + + +
Sbjct: 191 WRVDPRQAGPSYVLGDVGTHPLYLSEVMLPDLKIKRLMCSRQSFVASRAPLEDNAYTLME 250
Query: 233 WDDGRVATFSCSFLA---NMTMDITATGTNGSLQLHDFIIPFREEEASY--FTNTRCFFN 287
++ G + S + I G+ SL+ + +E + F
Sbjct: 251 YEGGAMGMVWSSAVNAGSMHGQKIRVIGSRASLE-------WWDERPNQLSFEVQGQPAQ 303
Query: 288 DLVTGWVPLPSEHVVTTDIP-------QEA--CMVREFSRLVANIKNGSKPEQK---WPI 335
L G L ++ I EA + F+ + +P
Sbjct: 304 ILERGMGYLHPNALIDDRIGGGHPEGLFEAWANLYYRFALAMDATDRSDTQALSAVRYPG 363
Query: 336 ISR--KTQLIIDAVKTSIERG 354
I + ++ S +
Sbjct: 364 IDAGVEGVRWVERCVLSADND 384
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} Length = 417 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 65/384 (16%), Positives = 128/384 (33%), Gaps = 48/384 (12%)
Query: 9 IRFGIIG---AADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYGS 64
IR G++G A I A L + +++ S + EKA + P +VY
Sbjct: 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPS-RVYSD 96
Query: 65 YEALLDD-----KDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA 119
++ + I+AV + P +H A ++ H++ +KP+ +A+ + A
Sbjct: 97 FKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKA 156
Query: 120 CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF--SFAGDAEFLKNDIRV 177
+E+ + + P Q +E + + G +R + + + + +
Sbjct: 157 ADESDALFVLTHNYTGYPMVRQAREMIEN-GDIGAVRLVQMEYPQDWLTENIEQSGQKQA 215
Query: 178 KPDLD-----GLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLH 232
D G+ GD G + + + E + + A + + + +
Sbjct: 216 AWRTDPARSGAGGSTGDIGTHAYNLGCFVSGLE-LEELAADLDSFVGGRQLDDNAHVLMR 274
Query: 233 WDDGR----VATFSCSFLA---NMTMDITATGTNGSL-----QLHDFIIPFREEEASYFT 280
+ + CS +A + + GT G L + E T
Sbjct: 275 FREKDGTRAKGMLWCSQVAPGHENGLMVRVYGTKGGLEWTQKDPNYLWYTPFGEPKRLLT 334
Query: 281 NTRCFFNDLVTGWVPLPSEHVVTTDIPQE------ACMVREFSRLVANIKNGSKPEQK-- 332
+ +PS H E A + E +R + +NG K +
Sbjct: 335 RAGAGASPAAARVSRIPSGH-------PEGYLEGFANIYSEAARAIYAKRNGGKADPSVI 387
Query: 333 WPIISR--KTQLIIDAVKTSIERG 354
+P I + +DA S ER
Sbjct: 388 YPTIDDGMRGMTFVDACVRSSERN 411
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} Length = 304 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 4e-14
Identities = 18/126 (14%), Positives = 48/126 (38%), Gaps = 10/126 (7%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IR I+G +I R +A+ AP+ ++ + R+ + P + + + +
Sbjct: 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV---------PFELQPFRVVSDI 60
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAE-FDVILNACEENGVQL 127
+ +D + P+ + A+ + +K + + + +A ++G
Sbjct: 61 EQLESVDVALVCSPSREVERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAA 120
Query: 128 MDGTMW 133
+ + W
Sbjct: 121 VIASGW 126
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-07
Identities = 52/389 (13%), Positives = 104/389 (26%), Gaps = 110/389 (28%)
Query: 13 IIGAADIARKLSRAITL---APNAVLSAVASRSLEK-----ATNFAKANNFP-PDAKVYG 63
II + D R ++ L + P ++Y
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 64 SY-EALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVIL----- 117
+ L +D V+ +V + ++ LL +P +V++
Sbjct: 114 EQRDRLYNDNQ---VFAK----YNVSRLQPYLKLRQALLELRPAK------NVLIDGVLG 160
Query: 118 --------NACEENGVQLM--DGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF--SFA 165
+ C VQ W++ +K S L+ + ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLN------LKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVIL 225
++ N + +R +L + Y ++ VL V
Sbjct: 215 SRSDHSSNIKLRIHSIQ----------AELRRLLKSKPY--ENCLL-----VLLN--V-- 253
Query: 226 SCGASLHWDDGRVATF--SCSFLANMT------MDITATGTNGSLQLHDFIIPFREEEAS 277
+ F SC L +T D + T + L + +E
Sbjct: 254 -------QNAKAWNAFNLSCKIL--LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 278 YFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREF--SRLVANIKNGSKPEQKWPI 335
L+ ++ + D+P+E S + +I++G W
Sbjct: 305 ----------SLLLKYLDCRPQ-----DLPREVLTTNPRRLSIIAESIRDGLATWDNWK- 348
Query: 336 ISRKTQLIIDAVKTSIERGFE---PIEIK 361
+ D + T IE P E +
Sbjct: 349 -----HVNCDKLTTIIESSLNVLEPAEYR 372
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* Length = 320 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 5e-06
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 11/126 (8%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IR I+G ++ R + + I P+ L + SR V+ +
Sbjct: 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR----------ATLDTKTPVFDVADVD 53
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAE-FDVILNACEENGVQL 127
D+D ++L + ++ + + + ++ V+ A G
Sbjct: 54 KHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVA 113
Query: 128 MDGTMW 133
+ T W
Sbjct: 114 LVSTGW 119
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 100.0 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 100.0 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 100.0 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 100.0 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 100.0 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 100.0 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 100.0 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 100.0 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 100.0 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 100.0 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 100.0 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 100.0 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 100.0 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 100.0 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 100.0 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 100.0 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 100.0 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 100.0 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 100.0 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 100.0 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 100.0 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 100.0 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 100.0 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 100.0 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 100.0 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 100.0 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 100.0 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 100.0 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 100.0 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 100.0 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 100.0 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 100.0 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 100.0 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 100.0 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 100.0 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 100.0 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 100.0 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 100.0 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 100.0 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 100.0 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 100.0 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 100.0 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 100.0 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 100.0 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 100.0 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 100.0 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 100.0 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 99.95 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 99.9 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 99.85 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 99.85 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 99.82 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 99.81 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 99.76 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 99.75 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 99.75 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 99.74 | |
| 1r0k_A | 388 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 99.73 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 99.73 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.69 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 99.69 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 99.6 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 99.52 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 99.46 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 99.41 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 99.4 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 99.39 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 99.32 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 99.32 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 99.26 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 99.26 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 99.24 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.21 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 99.14 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 99.1 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 99.09 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 99.07 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 99.07 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 99.02 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 98.96 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 98.93 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.93 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.86 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 98.86 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.82 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 98.81 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.79 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 98.79 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 98.78 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 98.78 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 98.77 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.77 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 98.76 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 98.76 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 98.75 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.74 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.73 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.73 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 98.72 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 98.7 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.7 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.69 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.69 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.68 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 98.68 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 98.67 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 98.65 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.65 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 98.64 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 98.64 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.63 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 98.6 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.6 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.6 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 98.59 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.58 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.57 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.57 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 98.57 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.57 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.56 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.54 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 98.53 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 98.53 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.48 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.46 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.46 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 98.45 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.44 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.4 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 98.39 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 98.39 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.37 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 98.36 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.35 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.31 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 98.29 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.27 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.27 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 98.26 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.26 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.25 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 98.24 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 98.19 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.19 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 98.17 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 98.17 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.15 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.15 | |
| 2y1e_A | 398 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 98.15 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.15 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 98.14 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 98.13 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.12 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.11 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 98.1 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 98.1 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 98.1 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.1 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 98.08 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.07 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 98.07 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.05 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.03 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.02 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.0 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 97.98 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 97.98 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 97.97 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.96 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.95 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.94 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 97.93 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.93 | |
| 3au8_A | 488 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N | 97.93 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 97.9 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 97.89 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 97.87 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 97.84 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.83 | |
| 1rm4_O | 337 | Glyceraldehyde 3-phosphate dehydrogenase A; rossma | 97.81 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 97.79 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.78 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 97.78 | |
| 2obn_A | 349 | Hypothetical protein; structural genomics, joint c | 97.78 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 97.76 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.75 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.7 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.7 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.69 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.68 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 97.68 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.67 | |
| 3mwd_B | 334 | ATP-citrate synthase; ATP-grAsp, phosphohistidine, | 97.66 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.64 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 97.64 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.63 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.62 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 97.62 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 97.62 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 97.61 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 97.6 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.58 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.58 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.57 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.56 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.56 | |
| 2g0t_A | 350 | Conserved hypothetical protein; structural genomic | 97.56 | |
| 2g82_O | 331 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G | 97.55 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 97.55 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.54 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.52 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 97.51 | |
| 1obf_O | 335 | Glyceraldehyde 3-phosphate dehydrogenase; glycolyt | 97.47 | |
| 2b4r_O | 345 | Glyceraldehyde-3-phosphate dehydrogenase; SGPP, st | 97.43 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 97.43 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.42 | |
| 2ep7_A | 342 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o | 97.41 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 97.39 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.38 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.38 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.38 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.37 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.36 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.35 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 97.35 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.34 | |
| 1q0q_A | 406 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o | 97.34 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 97.33 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 97.32 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 97.31 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.31 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 97.31 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 97.29 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 97.28 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 97.27 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.27 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 97.27 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 97.26 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 97.25 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 97.24 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 97.22 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 97.19 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.19 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 97.18 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 97.16 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 97.16 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 96.24 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.14 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.14 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 97.14 | |
| 3v1y_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 97.13 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 97.12 | |
| 3pym_A | 332 | GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase | 97.11 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.1 | |
| 3lvf_P | 338 | GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase | 97.1 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 97.09 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.09 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 97.08 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.07 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.06 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 97.05 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.04 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.04 | |
| 4dib_A | 345 | GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n | 97.03 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.03 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.03 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 97.0 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.0 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 97.0 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.0 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.99 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.97 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 96.96 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.95 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.95 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.95 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.94 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 96.93 | |
| 3pzr_A | 370 | Aspartate-semialdehyde dehydrogenase; NADP, oxidor | 96.93 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.92 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.91 | |
| 3uw3_A | 377 | Aspartate-semialdehyde dehydrogenase; structural g | 96.89 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 96.87 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 96.87 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.86 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.85 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 96.84 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 96.83 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.83 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 96.83 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 96.82 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 96.81 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.8 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 96.79 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 96.79 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.78 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 96.78 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.77 | |
| 3doc_A | 335 | Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, | 96.77 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.75 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 96.74 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 96.74 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.74 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 96.7 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.68 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.68 | |
| 1gr0_A | 367 | Inositol-3-phosphate synthase; isomerase, oxidored | 96.67 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 96.66 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 96.65 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 96.62 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 96.62 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.56 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 96.55 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.54 | |
| 3hja_A | 356 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; n | 96.54 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.53 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 96.49 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 96.48 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.44 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 96.41 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 96.37 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 96.36 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 96.35 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.34 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.34 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.33 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.33 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 96.3 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 96.3 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.29 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.29 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.28 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.19 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.17 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 96.17 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 96.17 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.16 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 96.15 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 96.11 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.11 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 96.1 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.1 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.08 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.05 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.05 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.05 | |
| 3ids_C | 359 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g | 96.04 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.03 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.01 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 95.99 | |
| 3da8_A | 215 | Probable 5'-phosphoribosylglycinamide formyltransf | 95.97 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 95.96 | |
| 3pff_A | 829 | ATP-citrate synthase; phosphohistidine, organic ac | 95.93 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 95.9 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.86 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.86 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 95.82 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 95.79 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.74 | |
| 3q0i_A | 318 | Methionyl-tRNA formyltransferase; structural genom | 95.71 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 95.71 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.7 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.66 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.63 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.63 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.62 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.61 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 95.55 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 95.55 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.55 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.5 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 95.49 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.48 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.46 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.45 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 95.43 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.41 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 95.38 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.37 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 95.32 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.31 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 95.29 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.29 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.26 | |
| 3auf_A | 229 | Glycinamide ribonucleotide transformylase 1; struc | 95.25 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.24 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.24 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.23 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.19 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 95.19 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 95.17 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.12 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 95.08 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 95.08 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.02 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.01 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 95.0 | |
| 4ea9_A | 220 | Perosamine N-acetyltransferase; beta helix, acetyl | 94.99 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.98 | |
| 3cnb_A | 143 | DNA-binding response regulator, MERR family; signa | 94.95 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.92 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 94.91 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.87 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 94.85 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.82 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 94.81 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 94.78 | |
| 2ywr_A | 216 | Phosphoribosylglycinamide formyltransferase; rossm | 94.74 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 94.73 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.68 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 94.67 | |
| 3dmy_A | 480 | Protein FDRA; predicted actyl-COA synthetase, nysg | 94.66 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.64 | |
| 2bw0_A | 329 | 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase | 94.61 | |
| 3tqr_A | 215 | Phosphoribosylglycinamide formyltransferase; purin | 94.61 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.55 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.54 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 94.53 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 94.51 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 94.47 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 94.43 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 94.37 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 94.33 | |
| 3mjf_A | 431 | Phosphoribosylamine--glycine ligase; structural ge | 94.32 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 94.31 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.28 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 94.21 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.16 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 94.15 | |
| 3av3_A | 212 | Phosphoribosylglycinamide formyltransferase; struc | 94.13 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 94.07 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 94.05 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 94.02 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 94.0 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 93.98 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 93.97 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 93.97 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.95 | |
| 2bln_A | 305 | Protein YFBG; transferase, formyltransferase, L-AR | 93.94 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 93.92 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.9 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 93.9 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 93.88 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 93.85 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 93.84 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 93.79 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 93.77 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 93.73 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.71 | |
| 1fmt_A | 314 | Methionyl-tRNA FMet formyltransferase; initiator t | 93.64 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 93.64 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 93.6 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 93.6 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 93.57 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.47 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.47 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.32 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.31 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.29 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.23 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 93.18 | |
| 3tqq_A | 314 | Methionyl-tRNA formyltransferase; protein synthesi | 93.16 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 93.06 | |
| 3kcq_A | 215 | Phosphoribosylglycinamide formyltransferase; struc | 92.98 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.97 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 92.89 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 92.77 | |
| 3t8y_A | 164 | CHEB, chemotaxis response regulator protein-glutam | 92.77 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 92.71 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.7 | |
| 3rfo_A | 317 | Methionyl-tRNA formyltransferase; structural genom | 92.69 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 92.67 | |
| 3cg0_A | 140 | Response regulator receiver modulated diguanylate | 92.6 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 92.59 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 92.53 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 92.44 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 92.43 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 92.42 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 92.42 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.39 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.36 | |
| 3lp8_A | 442 | Phosphoribosylamine-glycine ligase; ssgcid, NIH, n | 92.32 | |
| 2xcl_A | 422 | Phosphoribosylamine--glycine ligase; GAR-SYN, ATP- | 92.3 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.29 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.23 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 92.19 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.13 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 92.13 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 92.11 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 92.06 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 92.05 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 92.04 | |
| 3cz5_A | 153 | Two-component response regulator, LUXR family; str | 91.98 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 91.93 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 91.92 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 91.86 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 91.85 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 91.81 |
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-62 Score=456.34 Aligned_cols=329 Identities=27% Similarity=0.407 Sum_probs=265.8
Q ss_pred CceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+++|||||||+|.||+. +++.+++.|+++|+||||++++++++++++||++ ++|+|+++||+++++|+|+|+||+.
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~y~d~~ell~~~~iDaV~I~tP~~ 97 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVP---HAFGSYEEMLASDVIDAVYIPLPTS 97 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCS---EEESSHHHHHHCSSCSEEEECSCGG
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC---eeeCCHHHHhcCCCCCEEEEeCCCc
Confidence 46799999999999986 5899999999999999999999999999999986 7899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|++++++||++|||||||||++.|++++++|.++|+++|+++++++++||+|.++++|++| ++|.||+|..+++.+.+
T Consensus 98 ~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~i~~~~~~ 176 (350)
T 4had_A 98 QHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLI-DEGAIGSLRHVQGAFTY 176 (350)
T ss_dssp GHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHH-HTTTTSSEEEEEEEEEE
T ss_pred hhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhh-hcCCCCcceeeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999998876
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEe
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~ 244 (362)
..++. .+|+..+..+ ||.|.|+|+|.+|+++|++|. +|++|++... ...+.+.++.+.++++|+||.++.+. +
T Consensus 177 ~~~~~---~~~~~~~~~g-GG~l~d~g~H~id~~~~l~G~-~~~~V~a~~~-~~~~~~~d~~~~~~l~~~~g~~~~~~-~ 249 (350)
T 4had_A 177 FNRDA---SNMRNIPELG-GGGLPDIGVYPVMSTRFSTGK-EPLRIQANTE-RDPDFGTDIYSSVKADFDDFELSFYV-S 249 (350)
T ss_dssp ECCCC----------------CCHHHHHHHHHHHHHHHCC-CCSEEEEEEE-ECTTTCCEEEEEEEEECSSCEEEEEE-E
T ss_pred ccccc---ccccCChhhc-CCcccCCceehhHHHHHHcCC-CceEEEEEEE-EcCCCCceEEEEEEEEECCEEEEEEE-e
Confidence 55432 3566666664 599999999999999999994 5999999853 33455789999999999999876554 4
Q ss_pred eeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhh
Q 018020 245 FLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIK 324 (362)
Q Consensus 245 ~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 324 (362)
+..+....++|+|++|++.+++................. .........+...+.|..++++|+++|+
T Consensus 250 ~~~~~~~~~~i~G~~G~i~i~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~F~~~i~ 316 (350)
T 4had_A 250 TQMANRQIMVFHGTNGYIEVKSPFNANRWGPEEIELADR-------------SHNESRIFRFQDSRQYRREVEAFARAVE 316 (350)
T ss_dssp SEEEEEEEEEEEESSCEEEESSTTTGGGTSCCEEEEECS-------------SSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCcccccccCceEEEEccccccccCCcceEEEecC-------------CCCceeEeecCCChHHHHHHHHHHHHHH
Confidence 444455679999999999997532111111111111111 0111111223344568899999999999
Q ss_pred cCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceee
Q 018020 325 NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360 (362)
Q Consensus 325 ~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l 360 (362)
+|+++.++ .+|++++++|++|+++|+++| +||.|
T Consensus 317 ~g~~~~~~-~~dal~~~~iieai~~Sa~~g-~wv~V 350 (350)
T 4had_A 317 NGKEEVVT-LENSKLNQKVIDAIYRASEKD-GWEAV 350 (350)
T ss_dssp HSCSCCCC-HHHHHHHHHHHHHHHHHTTSS-SCEEC
T ss_pred cCCCCCCC-HHHHHHHHHHHHHHHHHHHhC-CCcCC
Confidence 88877665 777999999999999999999 99986
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-61 Score=459.22 Aligned_cols=344 Identities=20% Similarity=0.223 Sum_probs=280.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
.+||||||||+|.||+.|++.+++.+ +++|+||||++++++++++++|+++ ++|+|+++||+++++|+|
T Consensus 24 s~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~---~~y~d~~~ll~~~~vD~V 100 (412)
T 4gqa_A 24 SARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAE---KAYGDWRELVNDPQVDVV 100 (412)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCS---EEESSHHHHHHCTTCCEE
T ss_pred cccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCC---eEECCHHHHhcCCCCCEE
Confidence 36899999999999999999997653 6899999999999999999999986 789999999999999999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
+|+||+..|++++++||++|||||||||++.|++++++|.++|+++|+++++++++||+|.++++|++| ++|.||+|..
T Consensus 101 ~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~ 179 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQII-ARGDIGEPVR 179 (412)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHHH-HHTTTCSEEE
T ss_pred EECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHHH-hcCCcCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEEeeecCC-cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC-----------------
Q 018020 158 MHSCFSFAGD-AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN----------------- 219 (362)
Q Consensus 158 i~~~~~~~~~-~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~----------------- 219 (362)
+++.+..... ..+.+.+|+.++...|||+|.|+|+|.+|+++|++| +|++|++.......
T Consensus 180 ~~~~~~~~~~~~~~~~~~wr~~~~~~GgG~l~d~g~H~iD~~~~l~G--~~~~V~a~~~~~~~~r~~~~~~~~~~~~~~~ 257 (412)
T 4gqa_A 180 FRGTFDQGFYNDPNLPWSWRCSKTLGGSGALGDLGAHTLSVAQFLLG--GIREVTASAQTCLRQRPVPQRDAGYASRVAA 257 (412)
T ss_dssp EEEEEECCSTTSTTSCCCGGGCTTTTCCSHHHHTHHHHHHHHHHHHC--CEEEEEEEEECCSCEEECC------------
T ss_pred EEEEeccccccCCCCCccceeccccCCCcchhhhhhhHHHHHHHHhC--CCeEEEEEEEecccccccccccccccccccc
Confidence 9998876432 334456799999998899999999999999999999 79999998532211
Q ss_pred -----CCCeeEeeEEEEEeCCCcEEEEEEeeeeCC---ceeEEEEeccceEEEcceeccCCCCcceEEeccccc----cc
Q 018020 220 -----EAGVILSCGASLHWDDGRVATFSCSFLANM---TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCF----FN 287 (362)
Q Consensus 220 -----~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~---~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~----~~ 287 (362)
+.+++|++.++++|+||+++++++++..+. ..+++|+||+|++.+++... ....+....... +.
T Consensus 258 ~~~~~~~~~eD~~~~~l~f~~G~~~~~~~s~~~~~~~~~~~~~i~Gt~G~l~~~~~~~----~~l~~~~~~~~~~~~~~~ 333 (412)
T 4gqa_A 258 DAEWREVENDDQVQCLVNFDSGAAGVIEASRIAAGRIFGVFWEVSGTEGTLYMDGERF----NELQVYRFNDDKHDRGFK 333 (412)
T ss_dssp CCCEEECCSCSEEEEEEEETTSCEEEEEEESCCTTCSSEEEEEEEETTEEEEEEGGGT----TEEEEEETTSCGGGCCEE
T ss_pred cccccccccceEEEEEEEeCCCcEEEEEEEeeecCCCCceEEEEEeCeEEEEEeccCC----ceEEEEecCCCcccccee
Confidence 235679999999999999999999988753 34799999999999974310 001111100000 00
Q ss_pred c-----cccccccCCcceeeecCCchhHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 288 D-----LVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 288 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
. ....+................+.+..++.+|+++|++|.++.++ .+|++++++|++|+++|+++| +||+|+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~f~~ai~~g~~~~~~-~~dal~~~~v~~Ai~~Sa~~g-~~V~v~ 410 (412)
T 4gqa_A 334 TLYAGSQIPAYAGFFGFDFGGGGLGYFDVKVIEVHDLVQGICGDDDCYPN-FEFGLQNQRVLSAIEASMVSR-RWVNVV 410 (412)
T ss_dssp EEECBTTSGGGGGTCCCSSCBCCCCHHHHHHHHHHHHHHHHSSSSCCSSC-HHHHHHHHHHHHHHHHHHHHC-SCEECC
T ss_pred eeccCCcCCcccccccccCcccccchhhHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHHcC-CceECC
Confidence 0 00000000000000112345677889999999999988877665 777999999999999999999 999986
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-60 Score=454.14 Aligned_cols=340 Identities=23% Similarity=0.268 Sum_probs=277.9
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhcCCC-------cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITLAPN-------AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~-------~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
.|+++||||||+|.||+.|++.++.+|+ ++|++|||++++++++++++||++ .+|+|+++||+++++|+|
T Consensus 3 ~M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~---~~~~d~~~ll~~~~iDaV 79 (390)
T 4h3v_A 3 AMTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWS---TTETDWRTLLERDDVQLV 79 (390)
T ss_dssp -CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCS---EEESCHHHHTTCTTCSEE
T ss_pred CCCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEE
Confidence 3568999999999999999999988764 499999999999999999999986 789999999999999999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHH---HHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNA---CEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~---a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
+|+||++.|++++++||++|||||||||++.|++|+++|.++ ++++|+++++++++||+|.++++|++| ++|.||+
T Consensus 80 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~ 158 (390)
T 4h3v_A 80 DVCTPGDSHAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIALARKLV-ADGKIGT 158 (390)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHH-HTTSSCS
T ss_pred EEeCChHHHHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHHHHHHHH-HcCCCCc
Confidence 999999999999999999999999999999999999999665 777999999999999999999999999 8999999
Q ss_pred eEEEEEEeeecCC-cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC--------------
Q 018020 155 LRTMHSCFSFAGD-AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN-------------- 219 (362)
Q Consensus 155 i~~i~~~~~~~~~-~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~-------------- 219 (362)
|..+++.+..... ..+.+.+|+.++...|||+|.|+|+|.+|+++|++|. +|++|++.......
T Consensus 159 i~~v~~~~~~~~~~~~~~~~~wr~~~~~~GgG~l~d~g~H~iD~~~~l~G~-~~~~V~a~~~~~~~~~~~~~~~~~~~~~ 237 (390)
T 4h3v_A 159 VRHVRAQYLQDWIADPEAPLSWRLDKDKAGSGALGDIGAHIVDLTQFITGD-RIAEVSGRLETFVKERPKPEAHSGLSGT 237 (390)
T ss_dssp EEEEEEEEECCTTCSTTSCCCGGGCHHHHSCSHHHHTHHHHHHHHHHHHSC-CEEEEEEEEECSCCEEECTTCCCCC--C
T ss_pred ceeeEEEEeeeccCCCCCCccccccccccCCcchhhhHHHHHHHHHHHhCC-CceEEEEEEEeecccCCccccccccccc
Confidence 9999998876432 2334567998888888899999999999999999994 59999998532211
Q ss_pred ------CCCeeEeeEEEEEeCCCcEEEEEEeeeeCC---ceeEEEEeccceEEEcceeccCCCCcceEEecccc------
Q 018020 220 ------EAGVILSCGASLHWDDGRVATFSCSFLANM---TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRC------ 284 (362)
Q Consensus 220 ------~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~---~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~------ 284 (362)
..+++|.+.++++|+||.++++++++..+. ..+++|+|++|++.++.... ....+......
T Consensus 238 ~~~~~~~~~vdd~~~~~~~~~~G~~~~~~~s~~~~~~~~~~~~~i~G~~G~l~~~~~~~----~~~~~~~~~~~~~~~~~ 313 (390)
T 4h3v_A 238 ASAERGPVTVDDAAVFLATFRGGALGVFEATRFATGRKNAIRIEINGSKGSLAFDFEDM----NLLHFYDATEDPETAGF 313 (390)
T ss_dssp CGGGEEECCSCSEEEEEEEETTSCEEEEEEESCCTTCSSEEEEEEEESSEEEEEEGGGT----TEEEEEETTSCTTTCCE
T ss_pred ccccccccccccceeeEEecCCCcEEeeeeeccccCCCCcceeEEEcceEEEEEecCCC----ceEEEecCCCCcccccc
Confidence 235778999999999999999999987653 34789999999999974221 11111111000
Q ss_pred -------cccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcc
Q 018020 285 -------FFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEP 357 (362)
Q Consensus 285 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~ 357 (362)
........|... .......+.|..++.+|+++|++|++|.++ .+|++++++|++|+++|+++| +|
T Consensus 314 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~f~~ai~~g~~~~~~-~~dal~~~~i~~A~~~Sa~~g-~~ 385 (390)
T 4h3v_A 314 RRILATEPVHPYVAGWWPP------GHLLGYEHGFTHQVVDLVTAIAEGKDPEPS-FADGLQVQRVLAAVETSSTSR-QW 385 (390)
T ss_dssp EEEESCSTTSTTGGGSCCT------TCCCCTTHHHHHHHHHHHHHHHHTCCCSSC-HHHHHHHHHHHHHHHHHHHHT-BC
T ss_pred ccccccCccccccccccCC------CcccchhHHHHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHHHHHHhCC-CC
Confidence 000000111110 011234567899999999999988877765 777999999999999999999 99
Q ss_pred eeec
Q 018020 358 IEIK 361 (362)
Q Consensus 358 V~l~ 361 (362)
|+|+
T Consensus 386 V~vp 389 (390)
T 4h3v_A 386 QEIP 389 (390)
T ss_dssp EECC
T ss_pred eECc
Confidence 9985
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-59 Score=443.86 Aligned_cols=343 Identities=18% Similarity=0.174 Sum_probs=267.7
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhc-------CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITL-------APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~-------~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
.|+++||||||+|+||+.|++.++. .|+++|+||||++++++++++++||++ ++|+|+++||+++++|+|
T Consensus 22 ~MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~y~d~~ell~~~~iDaV 98 (393)
T 4fb5_A 22 SMKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFE---KATADWRALIADPEVDVV 98 (393)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCS---EEESCHHHHHHCTTCCEE
T ss_pred CCCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCC---eecCCHHHHhcCCCCcEE
Confidence 4789999999999999999887754 467899999999999999999999986 789999999999999999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
+|+||+..|++++++||++|||||||||++.|++|+++|+++|+++|+.+++++++||+|.++++|++| ++|.||+|..
T Consensus 99 ~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i-~~G~iG~i~~ 177 (393)
T 4fb5_A 99 SVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLV-GDGVIGRVNH 177 (393)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHH-HTTTTCSEEE
T ss_pred EECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHH-HcCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEEeeecCCccc-ccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeecccc----------CCCCeeEe
Q 018020 158 MHSCFSFAGDAEF-LKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVL----------NEAGVILS 226 (362)
Q Consensus 158 i~~~~~~~~~~~~-~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~----------~~~~~~d~ 226 (362)
+++.+........ ....|+..... |||+|.|+|+|.+|+++||+| +|.+|++...... ...+.++.
T Consensus 178 v~~~~~~~~~~~~~~~~~~~~~~~~-ggG~l~d~g~H~iD~~~~l~G--~~~~v~a~~~~~~~~~~~~~~~~~~~~~~~~ 254 (393)
T 4fb5_A 178 VRVEMDEDFMADPDIFFYWKSELSA-GYGALDDFAVHPLSLLWYLFG--HVEAVITDMVKPYPDRPLSEGGRRAVENHDA 254 (393)
T ss_dssp EEEEEECCTTTCTTSCCCGGGCGGG-CCBHHHHTTHHHHHHHHHHTC--CEEEEEEEEECCCSEEECTTSSEEECCSBSE
T ss_pred eeeeeccccCCCccccccccccccC-CCceecceeeehHHHHHHhcC--CCeEEEEEeeecccCcccccCCccccccccc
Confidence 9998876433221 22234444444 569999999999999999999 7899988753221 12245678
Q ss_pred eEEEEEeCCCcEEEEEEeeeeCC---ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccc----cCCcc
Q 018020 227 CGASLHWDDGRVATFSCSFLANM---TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWV----PLPSE 299 (362)
Q Consensus 227 ~~~~~~~~~G~~~~~~~~~~~~~---~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 299 (362)
..+.++|++|..+++..++.... ..+++|+|++|++.++..... ...+................ ..+..
T Consensus 255 ~~~~~~~~~g~~~~~~~s~~~~~~~~~~~~~i~G~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (393)
T 4fb5_A 255 ANVLMRLDGGISAVLMANRAAWGRKGRIALQIYGSKGSILYDQERMN----EFELYQAEGPGSEQGFRKILAAPAHRPYD 330 (393)
T ss_dssp EEEEEEEGGGCEEEEEEESCCTTCSSEEEEEEEESSEEEEEEGGGTT----EEEEEESCSCGGGCCCEEEECCTTSTTHH
T ss_pred ceeeeecCCCeEEEEEEEeeeccCCCceEEEEEeeeeEEEeccCCcc----eEEEeccCCCcccccceeecccccccccc
Confidence 88999999999999999987653 347999999999998743211 00111100000000000000 00000
Q ss_pred ee---eecCCchhHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceee
Q 018020 300 HV---VTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEI 360 (362)
Q Consensus 300 ~~---~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l 360 (362)
.. ........+.|..++.+|+++|++|+++.++ .+|++++++|++|+++|+++| +||+|
T Consensus 331 ~~~~~~~~~~g~~~~~~~e~~~f~~~i~~~~~~~~~-~~d~l~~~~i~~A~~~Sa~~g-r~V~l 392 (393)
T 4fb5_A 331 RFIPAPGHGLGFNDLKIIECRELIRAITGEPSSIVT-FKDGLRIEKSVHAMAQSFHER-RWIEI 392 (393)
T ss_dssp HHCSSTTSCCCTTHHHHHHHHHHHHHHHCSCCCCCB-HHHHHHHHHHHHHHHHHHHTT-SCEEC
T ss_pred cccccCCcccchhHHHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHHcC-CEEeC
Confidence 00 0011234567889999999999988777665 778999999999999999999 99987
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-58 Score=428.92 Aligned_cols=339 Identities=22% Similarity=0.262 Sum_probs=280.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||||||+|.||..|++.++++|+++++++||+++++++++++++|++ .|+|++++++++++|+|+|+||+..|
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~----~~~~~~~~l~~~~~D~V~i~tp~~~h 79 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCA----GDATMEALLAREDVEMVIITVPNDKH 79 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCC----CCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCC----CcCCHHHHhcCCCCCEEEEeCChHHH
Confidence 57999999999999999999999999999999999999999999999975 59999999988899999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
.+++++|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+.+..
T Consensus 80 ~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~v~~~~~~~~ 158 (354)
T 3db2_A 80 AEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMI-DTKEIGEVSSIEAVFSNER 158 (354)
T ss_dssp HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHH-HTTTTCCEEEEEEEEECSG
T ss_pred HHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHH-hcCCCCCeEEEEEEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999987765
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEeee
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 246 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~ 246 (362)
+..|...+|+..+...|||.|.|+|+|.+|+++|++| .|++|++.........+.+|++.++++|+||+++++++++.
T Consensus 159 ~~~~~~~~w~~~~~~~ggG~l~d~g~H~ld~~~~l~G--~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~~~~~~~s~~ 236 (354)
T 3db2_A 159 GLELKKGNWRGEPATAPGGPLTQLGVHQIDNLQFLLG--PVARVFNFGKPMYTEVENITVNQTLLEFEDGKQAYLGTNWA 236 (354)
T ss_dssp GGTCCTTCGGGCTTTSTTTHHHHTHHHHHHHHHHHHC--CEEEEEEEEECCSCSSSSCCEEEEEEEETTSCEEEEEEESS
T ss_pred CcccccCCCccccccCCCceeccchhHHHHHHHHHhC--CCeEEEEEeeccCCCCCCCceEEEEEEECCCCEEEEEEEec
Confidence 5555455799888888889999999999999999999 69999999755544467889999999999999999999998
Q ss_pred eCCceeEEEEeccceEEEcceeccCCCCcceEEeccccccc-cccc-ccccC-----CcceeeecCCchhHHHHH-HHHH
Q 018020 247 ANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFN-DLVT-GWVPL-----PSEHVVTTDIPQEACMVR-EFSR 318 (362)
Q Consensus 247 ~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~ 318 (362)
.+...+++|+|++|++.+++......... ... ... .... .|... .......... ....|.. ++.+
T Consensus 237 ~~~~~~~~i~G~~G~i~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 309 (354)
T 3db2_A 237 CPGVFSINVYGTKANLFYQLDFSWWSNSD-----VTD-EHSTLIKREFASMSDDPDNRILRDVKVDF-ESVDHLRVEVEE 309 (354)
T ss_dssp SSCEEEEEEEESSEEEEEEECGGGTTSTT-----SGG-GGEEEEEEEECC------CCCEEEEECCC-CCCCHHHHHHHH
T ss_pred cCCceEEEEEeccEEEEEeCCCcEEEEcc-----CCC-ccccccccccccccCCCccCCCcccceec-ccccccHHHHHH
Confidence 65447899999999999986431110000 000 000 0000 00000 0000000111 1234666 9999
Q ss_pred HHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 319 LVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 319 ~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
|+++|++|.+|..+ .++++++++|++|+++|+++| ++|+|+
T Consensus 310 f~~ai~~g~~~~~~-~~d~~~~~~i~~a~~~Sa~~g-~~V~l~ 350 (354)
T 3db2_A 310 VADVIRNGGETEIG-AEASLRNLAVVLAAVKSVHEK-RPVEIA 350 (354)
T ss_dssp HHHHHHHCCCCSSC-HHHHHHHHHHHHHHHHHHHHT-SCEEHH
T ss_pred HHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhcC-CceeHH
Confidence 99999988877655 778999999999999999998 999874
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=429.95 Aligned_cols=353 Identities=64% Similarity=1.099 Sum_probs=282.0
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+++++||||||+|.||..|++.+.+.+++++++|||+++++++.+++++|+++.+..|+|++++|+++++|+|+|+||+.
T Consensus 3 ~~~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 82 (362)
T 1ydw_A 3 TETQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS 82 (362)
T ss_dssp ---CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG
T ss_pred CCCceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH
Confidence 45689999999999999999999999999999999999999999999999754457899999999988999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCC-CccceEEEEEEee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ-RFGQLRTMHSCFS 163 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g-~iG~i~~i~~~~~ 163 (362)
.|.+++++||++||||+||||++.+.+++++|.++|+++|+.+++++++||+|.++++|++| ++| .||+|..+++.+.
T Consensus 83 ~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i-~~g~~iG~i~~v~~~~~ 161 (362)
T 1ydw_A 83 LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHNPRTALLKEFL-SDSERFGQLKTVQSCFS 161 (362)
T ss_dssp GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGSGGGTTTTTGG-GCTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEeeccCHHHHHHHHHH-HhcCCccceEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 776 6999999999988
Q ss_pred ecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 164 FAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
++.++.|...+|+..+..+|||+|.|+|+|.+|+++|++|...|++|++.......+.+.+|.+.++++|+||+++++++
T Consensus 162 ~~~~~~~~~~~wr~~~~~~ggG~l~d~g~H~id~~~~l~g~~~p~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~~~~~~~ 241 (362)
T 1ydw_A 162 FAGDEDFLKNDIRVKPGLDGLGALGDAGWYAIRATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTATIYC 241 (362)
T ss_dssp EECCHHHHHHCGGGCTTSSTTHHHHHTHHHHHHHHHHHTTTCCCSEEEECSCCEECTTSCEEEEEEEEECSSSCEEEEEE
T ss_pred ecCCcccccCCcccCcccCCCceeecccHHHHHHHHHhcCCCCCeEEEEeccccccCCCCceEEEEEEEECCCCEEEEEE
Confidence 77766666678999888888899999999999999999986569999998644444556899999999999999999999
Q ss_pred eeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhh
Q 018020 244 SFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANI 323 (362)
Q Consensus 244 ~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 323 (362)
++..+...+++|+|++|++.+++...........+.............+|.............+ .+..++.+|+++|
T Consensus 242 s~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~i 318 (362)
T 1ydw_A 242 SFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEHTVKTELP---QEACMVREFARLV 318 (362)
T ss_dssp ESEEEEEEEEEEEESSEEEEESSCSSCSBTTEEEEEEEESCCBCTTSSSBSSCCEEEEEECSSC---HHHHHHHHHTTCC
T ss_pred EcccCCCceEEEEeccEEEEECceeecccCCcceEEEecCccccccccccccCcceeccCCCch---HHHHHHHHHHHHH
Confidence 9988767789999999999998643222111112222111111112223333211111111111 1345778888888
Q ss_pred ----hcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 324 ----KNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 324 ----~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
++|.++.+...++++++++|++|+++|+++|++||+|+
T Consensus 319 ~~i~~~g~~~~~~~~~~~l~~~~ii~a~~~S~~~g~~~V~l~ 360 (362)
T 1ydw_A 319 GEIKNNGAKPDGYWPSISRKTQLVVDAVKESVDKNYQQISLS 360 (362)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHTTTCCEECC
T ss_pred hhhhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHcCCeEEEec
Confidence 66666655557889999999999999999986899874
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=424.64 Aligned_cols=337 Identities=17% Similarity=0.205 Sum_probs=278.9
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.++++||||||+|.||..|++.+.+. ++++++++||+++++++++++++|+ ..|+|++++|+++++|+|+|+||+
T Consensus 10 ~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 10 TDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA----RGHASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp CSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC----EEESCHHHHHHHCCCSEEEECSCG
T ss_pred CCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC----ceeCCHHHHhcCCCCCEEEECCCc
Confidence 34689999999999999999999988 8999999999999999999999986 589999999998899999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
..|.+++++|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+.
T Consensus 86 ~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~i~~v~~~~~ 164 (354)
T 3q2i_A 86 GLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAM-QEKRFGRIYMVNVNVF 164 (354)
T ss_dssp GGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHH-HTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHH-hcCCCCceEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999888
Q ss_pred ecCCcccccC-ccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEE
Q 018020 164 FAGDAEFLKN-DIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFS 242 (362)
Q Consensus 164 ~~~~~~~~~~-~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~ 242 (362)
+..+..|.+. +|+..+..+ ||.|.|+|+|.+|+++|++| +|++|++.......+.+.+|++.++++|+||++++++
T Consensus 165 ~~~~~~~~~~~~w~~~~~~~-gG~l~d~g~H~ld~~~~l~G--~~~~v~a~~~~~~~~~~~~d~~~~~l~~~~G~~~~~~ 241 (354)
T 3q2i_A 165 WTRPQEYYDAAGWRGTWEFD-GGAFMNQASHYVDLLDWLIG--PVESVQAYTATLARNIEVEDTGTVSVKWRSGALGSMN 241 (354)
T ss_dssp CBCCHHHHHTSTTTTCTTTT-CCCCCCCTHHHHHHHHHHHC--CEEEEEEEEECSSSSSSSCSEEEEEEEETTSCEEEEE
T ss_pred EecCchhccccCccccccCC-CchhhhhhhHHHHHHHHhcC--CceEEEEEeeccCCCCCccceeEEEEEECCCCEEEEE
Confidence 7766655543 788888776 59999999999999999999 7999999976555566789999999999999999999
Q ss_pred EeeeeCC---ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHH
Q 018020 243 CSFLANM---TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRL 319 (362)
Q Consensus 243 ~~~~~~~---~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
+++.... ..+++|+|++|++.+++.. ......+.......... .. ..............+..++.+|
T Consensus 242 ~s~~~~~~~~~~~~~i~G~~G~i~~~~~~---~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~f 311 (354)
T 3q2i_A 242 VTMLTYPKNLEGSITILGEKGSVRVGGVA---VNEIQHWEFSEPHAMDE---EI----KDASYATTSVYGFGHPLYYDNV 311 (354)
T ss_dssp EESBCSSSCCEEEEEEEETTEEEEEETTT---TCEEEEEEESSCCGGGG---GH----HHHC-------CCSHHHHHHHH
T ss_pred EEeeecCCCCCcEEEEEeccEEEEECCcc---cccceeeeecccCCccc---cc----cccccCCcccCCccHHHHHHHH
Confidence 9998732 4689999999999998421 00111111111000000 00 0000000011112347789999
Q ss_pred HHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 320 VANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 320 ~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+++|++|.++.. +.++++++++|++|+++|+++| ++|+|.
T Consensus 312 ~~~i~~~~~~~~-~~~d~~~~~~i~~a~~~Sa~~g-~~V~l~ 351 (354)
T 3q2i_A 312 IKTMRGEATPET-DGREGLKSLELLIAMYLSARDG-RRVSLP 351 (354)
T ss_dssp HHHHTTSCCCSS-BHHHHHHHHHHHHHHHHHHHHT-SCEESC
T ss_pred HHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhcC-CeEeCC
Confidence 999998876655 4788999999999999999999 999985
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-57 Score=432.40 Aligned_cols=351 Identities=17% Similarity=0.167 Sum_probs=267.7
Q ss_pred CccCCceeEEEEEeccH---HHHHHHHHHhcCCCcEEEE-EEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-----C
Q 018020 2 ATESQAAIRFGIIGAAD---IARKLSRAITLAPNAVLSA-VASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-----K 72 (362)
Q Consensus 2 ~~~~~~~~~v~iiG~G~---~g~~~~~~~~~~~~~~vv~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-----~ 72 (362)
+..+|+++||||||+|. ||..|++.++..+++++++ |||+++++++++++++|++ ...+|+|+++||++ +
T Consensus 31 ~~~~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~-~~~~~~~~~~ll~~~~~~~~ 109 (417)
T 3v5n_A 31 TETRQKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLD-PSRVYSDFKEMAIREAKLKN 109 (417)
T ss_dssp ----CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCC-GGGBCSCHHHHHHHHHHCTT
T ss_pred ccccCCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCC-cccccCCHHHHHhcccccCC
Confidence 33457889999999998 9999999999998999996 9999999999999999984 23689999999998 7
Q ss_pred CCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 73 DIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
++|+|+|+||+..|++++++||++||||+||||++.+++++++|.++++++|+++++++++||+|.++++|++| ++|.|
T Consensus 110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~i 188 (417)
T 3v5n_A 110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMI-ENGDI 188 (417)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHH-HTTTT
T ss_pred CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHH-hcCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999 89999
Q ss_pred cceEEEEEEeeecC--Ccc----cccCccCcCCCCCC-CcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeE
Q 018020 153 GQLRTMHSCFSFAG--DAE----FLKNDIRVKPDLDG-LGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVIL 225 (362)
Q Consensus 153 G~i~~i~~~~~~~~--~~~----~~~~~w~~~~~~~g-gg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d 225 (362)
|+|..+++.+.... .+. +...+|+.++..+| ||+|.|+|+|.+|+++|++|. +|++|++...........+|
T Consensus 189 G~i~~v~~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~G~gG~l~d~g~H~lDl~~~l~G~-~~~~V~a~~~~~~~~~~~~D 267 (417)
T 3v5n_A 189 GAVRLVQMEYPQDWLTENIEQSGQKQAAWRTDPARSGAGGSTGDIGTHAYNLGCFVSGL-ELEELAADLDSFVGGRQLDD 267 (417)
T ss_dssp CSEEEEEEEEECCTTSCC--------------------CCHHHHTHHHHHHHHHHHHCC-CEEEEEEEEECCSTTCCSCC
T ss_pred CCeEEEEEEEecccccCccccccCCCcCcccCHHHcCCccHHHHHHHHHHHHHHHhcCC-CceEEEEEEEecCCCCCCce
Confidence 99999999986422 111 33457999888877 799999999999999999995 59999999765556667899
Q ss_pred eeEEEEEeCC----CcEEEEEEeeeeCC---ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccc--ccc-
Q 018020 226 SCGASLHWDD----GRVATFSCSFLANM---TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTG--WVP- 295 (362)
Q Consensus 226 ~~~~~~~~~~----G~~~~~~~~~~~~~---~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~- 295 (362)
++.++++|+| |+++++++++..+. ..+++|+|++|++.+++.. .....+..... .......+ +..
T Consensus 268 ~~~~~l~~~~~~~~G~~~~~~~s~~~~~~~~~~~~~i~Gt~G~l~~~~~~----~~~l~~~~~~~-~~~~~~~~~~~~~~ 342 (417)
T 3v5n_A 268 NAHVLMRFREKDGTRAKGMLWCSQVAPGHENGLMVRVYGTKGGLEWTQKD----PNYLWYTPFGE-PKRLLTRAGAGASP 342 (417)
T ss_dssp EEEEEEEECCBTTBCCEEEEEEESCCTTCSSCCEEEEEESSEEEEEETTS----TTEEEEEETTS-CEEEEETTSTTCCH
T ss_pred EEEEEEEECCCCCCCeEEEEEEEecccCCCCCeEEEEEecceEEEEccCC----CCeEEEEeCCC-CcEEEecCCCccCc
Confidence 9999999999 99999999998653 3589999999999997421 11111111100 00000000 000
Q ss_pred ---CCcceeeecCCchhHHHHHHHHHHHHhhhc---CCCCC----CCchHhHHHHHHHHHHHHHHHhhCCcceee
Q 018020 296 ---LPSEHVVTTDIPQEACMVREFSRLVANIKN---GSKPE----QKWPIISRKTQLIIDAVKTSIERGFEPIEI 360 (362)
Q Consensus 296 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---g~~~~----~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l 360 (362)
.....+........+.|..++.+|+++|++ |.+|. ..+.+|+++++++++|+++|+++||+||+|
T Consensus 343 ~~~~~~~~~~g~~~~~~~~f~~~~~~f~~ai~~~~~G~~p~~~~~~~~~~dg~~~~~i~~A~~~S~~~~g~~V~v 417 (417)
T 3v5n_A 343 AAARVSRIPSGHPEGYLEGFANIYSEAARAIYAKRNGGKADPSVIYPTIDDGMRGMTFVDACVRSSERNGAWIKV 417 (417)
T ss_dssp HHHTTCCSCTTSCCCHHHHHHHHHHHHHHHHHTTC----CCTTCCCCCHHHHHHHHHHHHHHHHHHHTTSCCBC-
T ss_pred hhhhhccCCCCCCccHHHHHHHHHHHHHHHHHhhccCCCCcccCCCCCHHHHHHHHHHHHHHHHHHhcCCCceeC
Confidence 000000001133456788999999999996 44431 345788999999999999999996699975
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-57 Score=421.18 Aligned_cols=320 Identities=23% Similarity=0.313 Sum_probs=272.7
Q ss_pred cCCceeEEEEEecc-HHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 4 ESQAAIRFGIIGAA-DIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 4 ~~~~~~~v~iiG~G-~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.+.+++||||||+| .+|..|++.+++. ++++|++|||++++++++++++++++ .+|+|++++|+++++|+|+|+|
T Consensus 14 ~~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~vD~V~i~t 90 (340)
T 1zh8_A 14 KPLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNP---AVFDSYEELLESGLVDAVDLTL 90 (340)
T ss_dssp --CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSC---EEESCHHHHHHSSCCSEEEECC
T ss_pred CCCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCC---cccCCHHHHhcCCCCCEEEEeC
Confidence 34578999999999 7999999999998 89999999999999999999999974 6899999999998999999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEE
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSC 161 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~ 161 (362)
|+..|++++++||++||||+||||++.|++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..+++.
T Consensus 91 p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~v~~~ 169 (340)
T 1zh8_A 91 PVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELV-ESGAIGDPVFMNWQ 169 (340)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHH-HTTTTSSEEEEEEE
T ss_pred CchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHH-hcCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999 89999999999988
Q ss_pred eeecCC--cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEE
Q 018020 162 FSFAGD--AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239 (362)
Q Consensus 162 ~~~~~~--~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~ 239 (362)
+..+.+ ..+...+|+.++..+| |.|.|+|+|.+|+++|++| +|++|++.........+.+|.+.++++|+||+.+
T Consensus 170 ~~~~~~~~~~~~~~~w~~~~~~~G-G~l~d~g~H~ld~~~~l~G--~~~~V~a~~~~~~~~~~~~D~~~~~l~~~~G~~~ 246 (340)
T 1zh8_A 170 IWVGMDENNKYVHTDWRKKPKHVG-GFLSDGGVHHAAAMRLILG--EIEWISAVAKDLSPLLGGMDFLSSIFEFENGTVG 246 (340)
T ss_dssp EEBCCCTTCSGGGCHHHHTTCSTT-THHHHHHHHHHHHHHHHHC--CEEEEEEEEECCCTTSSSCCEEEEEEEETTSCEE
T ss_pred EeccccccCCCCCcCceECCcCCC-ceeeeccHHHHHHHHHhhC--CCeEEEEEEEccCCCCCCcceEEEEEEeCCCCEE
Confidence 764432 2344567888887755 9999999999999999999 6999999865544445678999999999999999
Q ss_pred EEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHH
Q 018020 240 TFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRL 319 (362)
Q Consensus 240 ~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
++++++..+...+++|+|++|++.+.. . .. ... ... ...+....|..++.+|
T Consensus 247 ~~~~s~~~~~~~~~~i~G~~G~i~~~~-----~-~~---~~~----------------~~~---~~~~~~~~~~~~~~~f 298 (340)
T 1zh8_A 247 NYTISYSLKGNERFEITGTKGKISISW-----D-KI---VLN----------------EEE---MKVPQENSYQKEFEDF 298 (340)
T ss_dssp EEEEESSSBCCCEEEEEESSCEEEEET-----T-EE---EET----------------TEE---EECCCCCHHHHHHHHH
T ss_pred EEEEEeeecCCCEEEEEeCcEEEEEEe-----C-Cc---ccc----------------cee---ecCCCcccHHHHHHHH
Confidence 999998876544999999999999831 0 00 000 000 0011124678999999
Q ss_pred HHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 320 VANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 320 ~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+++|++|.++...+.+++++++++++|+++| +| ++|+|+
T Consensus 299 ~~~i~~g~~~p~~~~~~~l~~~~i~~a~~~S--~g-~~V~l~ 337 (340)
T 1zh8_A 299 YQVVAEGKPNDLGSPVQALKDLAFIEACVRS--AG-NKVFVS 337 (340)
T ss_dssp HHHHHSCCCCSSSCHHHHHHHHHHHHHHHHH--TT-SCEEGG
T ss_pred HHHHHhCCCCCCCCHHHHHHHHHHHHHHHHc--CC-CEEeCc
Confidence 9999976654444588899999999999999 77 999874
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-57 Score=423.55 Aligned_cols=323 Identities=26% Similarity=0.405 Sum_probs=272.5
Q ss_pred CCceeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 5 SQAAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+|+++||||||+|.||. .|++.+++.|+++|++|||+++++++++++++|++ .++|++++++++++|+|+|+||+
T Consensus 24 ~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~----~~~~~~~ll~~~~~D~V~i~tp~ 99 (350)
T 3rc1_A 24 NANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGE----PVEGYPALLERDDVDAVYVPLPA 99 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSE----EEESHHHHHTCTTCSEEEECCCG
T ss_pred CCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCC----CcCCHHHHhcCCCCCEEEECCCc
Confidence 46789999999999998 69999999999999999999999999999999974 57999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
..|.+++++|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+.
T Consensus 100 ~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~v~~~~~ 178 (350)
T 3rc1_A 100 VLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADML-DEGVIGEIRSFAASFT 178 (350)
T ss_dssp GGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHH-HTTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHH-hcCCCCCeEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999 8999999999999987
Q ss_pred ecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 164 FAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
.+. +...+|+.++.. |||.|.|+|+|.+|+++|++|. +|++|++.... ....++++.+.++++|+||+++++++
T Consensus 179 ~~~---~~~~~wr~~~~~-gGG~l~d~g~H~ld~~~~l~G~-~~~~v~a~~~~-~~~~~~d~~~~~~l~~~~G~~~~~~~ 252 (350)
T 3rc1_A 179 IPP---KPQGDIRYQADV-GGGALLDIGVYPIRAAGLFLGA-DLEFVGAVLRH-ERDRDVVVGGNALLTTRQGVTAQLTF 252 (350)
T ss_dssp CCC---CCTTCGGGCTTT-TCHHHHHTTHHHHHHHHHHHCT-TCEEEEEEEEE-ETTTTEEEEEEEEEECTTCCEEEEEE
T ss_pred cCC---CCccccccCccc-CccHHHHHHHHHHHHHHHHcCC-CcEEEEEEEEe-CCCCCccceEEEEEEECCCCEEEEEE
Confidence 643 234578888887 5599999999999999999994 58999997432 33567899999999999999999999
Q ss_pred eeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhh
Q 018020 244 SFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANI 323 (362)
Q Consensus 244 ~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 323 (362)
++..+...+++|+|++|++.+++...........+...... .. .....+..+.|..++.+|+++|
T Consensus 253 s~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~~e~~~f~~~i 317 (350)
T 3rc1_A 253 GMEHAYTNNYEFRGSTGRLWMNRVFTPPATYQPVVHIERQD-------------HA--EQFVLPAHDQFAKSIRAFAQAV 317 (350)
T ss_dssp ESSSCCEEEEEEEESSCEEEEESCSCCCTTCCCEEEEEETT-------------EE--EEEECCCCCHHHHHHHHHHHHH
T ss_pred ecCCCCCCEEEEEeCCEEEEECcccCCCCCCceEEEEecCC-------------ce--EEEEcCCccHHHHHHHHHHHHH
Confidence 99877777899999999999985321111111111111110 00 0111223356899999999999
Q ss_pred hcCCCCCCCchHhHHHHHHHHHHHHHHHhhC
Q 018020 324 KNGSKPEQKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 324 ~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
++|.++. .+.++++++++|++|+++|++++
T Consensus 318 ~~g~~~~-~~~~dal~~~~ii~ai~~Sa~~~ 347 (350)
T 3rc1_A 318 LSGEHPR-EWSEDSLRQASLVDAVRTGARDI 347 (350)
T ss_dssp HHCCCCH-HHHHHHHHHHHHHHHHHHHSEEE
T ss_pred HcCCCCC-CCHHHHHHHHHHHHHHHHHhhhh
Confidence 9887665 45788999999999999999876
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-57 Score=429.30 Aligned_cols=336 Identities=16% Similarity=0.135 Sum_probs=261.6
Q ss_pred CceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||||||+|.+|.. |++.+++.|+++|++|||+++++ ++++++ ++.+|+|++++|+++++|+|+|+||+.
T Consensus 3 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~---~~~~~~---~~~~~~~~~~ll~~~~vD~V~i~tp~~ 76 (362)
T 3fhl_A 3 LEIIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL---SKERYP---QASIVRSFKELTEDPEIDLIVVNTPDN 76 (362)
T ss_dssp CCCEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG---GGTTCT---TSEEESCSHHHHTCTTCCEEEECSCGG
T ss_pred CCceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH---HHHhCC---CCceECCHHHHhcCCCCCEEEEeCChH
Confidence 35899999999999996 99999999999999999999765 456664 247899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|++++++||++||||+||||++.|++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..+++.+..
T Consensus 77 ~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~v~~~~~~ 155 (362)
T 3fhl_A 77 THYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDIL-AKSLLGRLVEYESTFAR 155 (362)
T ss_dssp GHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHH-HTTTTSSEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHH-HcCCCCCeEEEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999998876
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCC---CcEEEE
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDD---GRVATF 241 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~---G~~~~~ 241 (362)
..+. +...+|+.++.. |||+|+|+|+|.+|+++|++| +|++|++.........+.+|++.++++|+| |+.+++
T Consensus 156 ~~~~-~~~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G--~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~~~~G~~~~~ 231 (362)
T 3fhl_A 156 YRNF-IKPNTWKETGES-GGGLTYNLGSHLIDQAIQLFG--MPEAVFADLGILREGGKVDDYFIIHLLHPSLAPNVKITL 231 (362)
T ss_dssp BCCC----------------CHHHHTHHHHHHHHHHHHC--CEEEEEEEEECCSTTCCSCCEEEEEEEEETTSTTSEEEE
T ss_pred cCCC-CCccccccCCCC-CCceeeeehhhHHHHHHHHhC--CCcEEEEEEEEeCCCCCcceEEEEEEEECCCCCCeEEEE
Confidence 4432 233458887775 569999999999999999999 799999997655556678999999999999 999999
Q ss_pred EEeeeeCCc-eeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcc------------eeeecCCch
Q 018020 242 SCSFLANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSE------------HVVTTDIPQ 308 (362)
Q Consensus 242 ~~~~~~~~~-~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 308 (362)
++++..+.. .+++|+|++|++.+++..... ..+..... +....|...+.. .........
T Consensus 232 ~~s~~~~~~~~~~~i~G~~G~~~~~~~~~~~----~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 303 (362)
T 3fhl_A 232 KASYLMREAEPRFALHGTLGSYVKYGVDKQE----AALLAGEI----PERPNWGEESEQEWGLLHTEINGKEICRKYPGI 303 (362)
T ss_dssp EEESBCSSCCCSEEEEESSCEEEECCC-----------------------CCCSCCCGGGCEEEEEEETTEEEEEEECCC
T ss_pred EEEeccCCCCCEEEEEECCcEEEEeCCCccH----HHHhcCCC----CCCCccCCCchhhCcEEEecCCCcceeeecCCC
Confidence 999987654 479999999999996432110 00000000 000011111000 000001111
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 309 EACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 309 ~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
...|..++.+|+++|++|.++..+ .+|++++++|++|+++|+++| ++|.|.|
T Consensus 304 ~~~~~~~~~~f~~ai~~g~~~~~~-~~dal~~~~ii~a~~~Sa~~g-~~V~l~~ 355 (362)
T 3fhl_A 304 AGNYGGFYQNIYEHLCLGQPLETH-AQDILNVIRIIEAAYQSHREN-KIVNLKE 355 (362)
T ss_dssp CCCTTHHHHHHHHHHHHCCCCSCB-THHHHHHHHHHHHHHHHHHHT-SCEEC--
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHhhhhcC-CEEEecc
Confidence 234678899999999988877654 777999999999999999999 9999875
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=415.71 Aligned_cols=325 Identities=22% Similarity=0.306 Sum_probs=273.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||||||+|.||..|++.+++.+++++++|||++++++++++++++++ .+|+|++++++++++|+|+|+||+..|
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIP---VAYGSYEELCKDETIDIIYIPTYNQGH 80 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCC---CCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCC---ceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence 57999999999999999999999999999999999999999999999985 689999999998899999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
.++++.|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+..+.
T Consensus 81 ~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~i~~i~~~~~~~~ 159 (330)
T 3e9m_A 81 YSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATI-QEGGLGEILWVQSVTAYPN 159 (330)
T ss_dssp HHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHH-HTTTTCSEEEEEEEEEESC
T ss_pred HHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHH-hCCCCCCeEEEEEEecccC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999988754
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEeee
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 246 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~ 246 (362)
....+|+.++.. |||.|.|+|+|.+|+++|++|. +|++|++.. ...+.+.+|++.++++|+||+++++++++.
T Consensus 160 ---~~~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G~-~~~~v~a~~--~~~~~~~~d~~~~~l~~~~G~~~~~~~s~~ 232 (330)
T 3e9m_A 160 ---VDHIPWFYSREA-GGGALHGSGSYPLQYLQYVLGK-EIQEVTGTA--TYQQGATDSQCNLALKFAEGTLGNIFINVG 232 (330)
T ss_dssp ---CTTCGGGGCTTT-TCSHHHHHSHHHHHHHHHHHTC-CEEEEEEEE--EECSSSCEEEEEEEEEETTTEEEEEEEEES
T ss_pred ---CCCcCcccCccc-CCCHHHHhhHHHHHHHHHHhCC-CceEEEEEE--EeCCCCcceEEEEEEEECCCCEEEEEEEec
Confidence 123578888887 4599999999999999999995 499999985 234567899999999999999999999999
Q ss_pred eCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhhcC
Q 018020 247 ANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKNG 326 (362)
Q Consensus 247 ~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g 326 (362)
.+...+++|+|++|++.+++... .....+....+ .........+ ..|..++.+|+++|++|
T Consensus 233 ~~~~~~~~i~G~~G~i~~~~~~~---~~~~~~~~~~g--------------~~~~~~~~~~--~~~~~e~~~f~~~i~~g 293 (330)
T 3e9m_A 233 LKIPSEMTICGTKGQIVIPNFWK---TDCAYYTDAQG--------------NTVKWSEQFT--SEFTYEINHVNQCLQDK 293 (330)
T ss_dssp CCCCCEEEEEETTEEEEEETTTT---CSEEEEECSSS--------------CEEEEECCCS--CHHHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEEeCceEEEECCCCC---CCEEEEEECCC--------------ceEEEEEcCC--cccHHHHHHHHHHHHcC
Confidence 88888999999999999975321 11111111100 0001111111 12899999999999987
Q ss_pred CC-CCCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 327 SK-PEQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 327 ~~-~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
.. +...+.++++++++|++++++|+.++ +|.+.+|
T Consensus 294 ~~~~~~~~~~d~l~~~~i~~ai~~s~~~~-~~~~~~~ 329 (330)
T 3e9m_A 294 KLTSPVMTKELTIATVKIVESFYQEWFDN-EGHHHHH 329 (330)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHHHTCC-C------
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHhcCCC-ccccccC
Confidence 73 33345788999999999999999999 9998877
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-56 Score=423.62 Aligned_cols=349 Identities=14% Similarity=0.137 Sum_probs=270.0
Q ss_pred CCceeEEEEEeccH---HHHHHHHHHhcCCCcEEEE-EEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-----CCCc
Q 018020 5 SQAAIRFGIIGAAD---IARKLSRAITLAPNAVLSA-VASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-----KDID 75 (362)
Q Consensus 5 ~~~~~~v~iiG~G~---~g~~~~~~~~~~~~~~vv~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-----~~~D 75 (362)
+|+++||||||+|. ||..|++.++..+++++++ |||+++++++++++++|++ ...+|+|+++||++ +++|
T Consensus 9 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~-~~~~~~~~~~ll~~~~~~~~~vD 87 (398)
T 3dty_A 9 IPQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVD-SERCYADYLSMFEQEARRADGIQ 87 (398)
T ss_dssp SCSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCC-GGGBCSSHHHHHHHHTTCTTCCS
T ss_pred ccCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCC-cceeeCCHHHHHhcccccCCCCC
Confidence 36789999999999 9999999999888899998 8999999999999999984 23689999999986 6799
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccce
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQL 155 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i 155 (362)
+|+|+||+..|++++++||++||||+||||++.|++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|
T Consensus 88 ~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i-~~G~iG~i 166 (398)
T 3dty_A 88 AVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMI-AAGELGDV 166 (398)
T ss_dssp EEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHH-HTTTTCSE
T ss_pred EEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHH-hcCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred EEEEEEeeecC--Cc---ccccCccCcCCCCCC-CcccccccchHHHHHHHH-ccCCCCcEEEEeeccccCCC-CeeEee
Q 018020 156 RTMHSCFSFAG--DA---EFLKNDIRVKPDLDG-LGALGDAGWYGIRSILWA-NDYELPKTVIAMHGPVLNEA-GVILSC 227 (362)
Q Consensus 156 ~~i~~~~~~~~--~~---~~~~~~w~~~~~~~g-gg~l~~~g~h~id~~~~l-~g~~~~~~V~a~~~~~~~~~-~~~d~~ 227 (362)
..+++.+.... .+ .+...+|+.++..+| ||+|.|+|+|.+|+++|+ +|. +|++|++......... +.+|++
T Consensus 167 ~~v~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~G~gG~l~d~g~H~idl~~~l~~G~-~~~~V~a~~~~~~~~~~~~~D~~ 245 (398)
T 3dty_A 167 RMVHMQFAHGFHSAPVEAQSQATQWRVDPRQAGPSYVLGDVGTHPLYLSEVMLPDL-KIKRLMCSRQSFVASRAPLEDNA 245 (398)
T ss_dssp EEEEEEEECCTTCC------------------CCCSHHHHTTHHHHHHHHHHCTTC-CEEEEEEEEECSSGGGTTSCSEE
T ss_pred EEEEEEEecccccCccccccCCCCcccCHHHcCCccHHHHHHHHHHHHHHHHhcCC-CcEEEEEEeEeecCCCCCcceEE
Confidence 99999985422 11 133567999888876 589999999999999999 884 5999999875444443 489999
Q ss_pred EEEEEeCCCcEEEEEEeeeeCC---ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccc--ccc----CCc
Q 018020 228 GASLHWDDGRVATFSCSFLANM---TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTG--WVP----LPS 298 (362)
Q Consensus 228 ~~~~~~~~G~~~~~~~~~~~~~---~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~ 298 (362)
.++++|+||+++++++++..+. ..+++|+|++|++.+++.. .....+..... .......+ +.. ...
T Consensus 246 ~~~l~~~~G~~~~~~~s~~~~~~~~~~~~~i~G~~G~i~~~~~~----~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 320 (398)
T 3dty_A 246 YTLMEYEGGAMGMVWSSAVNAGSMHGQKIRVIGSRASLEWWDER----PNQLSFEVQGQ-PAQILERGMGYLHPNALIDD 320 (398)
T ss_dssp EEEEEETTSCEEEEEEESCCTTCSCCEEEEEEESSEEEEEETTS----TTEEEEEETTS-CEEEEETTCTTSCGGGTTTC
T ss_pred EEEEEECCCCEEEEEEeccccCCCCCcEEEEEecceEEEEecCC----CCEEEEEECCC-CcEEEEcCCCCCChhhhhhc
Confidence 9999999999999999988763 3689999999999997421 11111111110 00000000 000 000
Q ss_pred ceeeecCCchhHHHHHHHHHHHHhhh---cCCC--C---CCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 299 EHVVTTDIPQEACMVREFSRLVANIK---NGSK--P---EQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~i~---~g~~--~---~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
...........+.|..++.+|+++|+ +|.+ | ...+.+|+++++++++|+++|+++| ++|.+.|
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~g~~~~p~~~~~~~~~dg~~~~~i~eA~~~S~~~g-~~v~~~~ 391 (398)
T 3dty_A 321 RIGGGHPEGLFEAWANLYYRFALAMDATDRSDTQALSAVRYPGIDAGVEGVRWVERCVLSADND-SIWVAYE 391 (398)
T ss_dssp CSCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHTT-TCCEESS
T ss_pred ccCCCCcCcHHHHHHHHHHHHHHHHHhhhCCCCCccccCCCCCHHHHHHHHHHHHHHHHHHhcC-CeEEEec
Confidence 00000122356678999999999999 6765 1 2344788999999999999999999 8887754
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=418.88 Aligned_cols=338 Identities=19% Similarity=0.190 Sum_probs=269.4
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|+++||||||+|.||..|++.+++.++++|++|||+++++++ .++++|+ ..|+|++++|+++++|+|+|+||+..
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-~a~~~g~----~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE-AAAQKGL----KIYESYEAVLADEKVDAVLIATPNDS 77 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH-HHHTTTC----CBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred CCcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-HHHhcCC----ceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence 358999999999999999999999999999999999999876 5677776 48999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|.+++++||++||||+||||++.+++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..+++++...
T Consensus 78 h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~i~~~~~~~~~~ 156 (359)
T 3e18_A 78 HKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMF-EQKTIGEMFHLESRVHGA 156 (359)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHH-HHTTTSSEEEEEEEEECS
T ss_pred HHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHH-HcCCCCCeEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999887643
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.. ...+|+..+.. |||.|+|+|+|.+|+++|++|. +|++|++..... ...+++|.+.++++|+||+++++++++
T Consensus 157 ~~---~~~~wr~~~~~-gGG~l~d~g~H~iD~~~~l~G~-~~~~v~a~~~~~-~~~~~~d~~~~~l~~~~G~~~~i~~s~ 230 (359)
T 3e18_A 157 NG---IPGDWRHLKAH-GGGMVLDWGVHLLDQLLFLVDS-NVKSVSANLSFA-LGDEVDDGFVTFITFENGITAQIEVGT 230 (359)
T ss_dssp SC---SCSSGGGCGGG-TCSHHHHTHHHHHHHHHHHCCS-CEEEEEEEEECT-TCCSSCSEEEEEEEETTSCEEEEEEES
T ss_pred CC---CCCCcccCcCC-CCcHHHHHhhHHHHHHHHHhCC-CCeEEEEEEEec-CCCCCCceEEEEEEECCCCEEEEEEee
Confidence 32 23568887776 5599999999999999999994 589999985433 344688999999999999999999988
Q ss_pred eeCCc-eeEEEEeccceEEEcceeccCCCCcceEEeccccc---cccc------ccccccCCcce-eeecCCchhHHHHH
Q 018020 246 LANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTNTRCF---FNDL------VTGWVPLPSEH-VVTTDIPQEACMVR 314 (362)
Q Consensus 246 ~~~~~-~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~ 314 (362)
..... .+++|+|++|++.+++.... ........... .... ...+....... ...........|..
T Consensus 231 ~~~~~~~~~~i~G~~G~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
T 3e18_A 231 TNFIKLPRWYVKGTEGTGIIHDWDLS----GEIVKPTALAKTSEPTPIKAGQGLTKTMAPPSEEATNTLSLPAPAKLAPS 306 (359)
T ss_dssp SCSSCCCSEEEEETTEEEEECSTTCC----EEEEEECTTTTTCCCCCEEETTEEESTTSCCCGGGEEEECCCCCCCCCSC
T ss_pred ccCCCCCeEEEEeeeEEEEEcCcCcc----chhhccccccccccCCccccccccccccCCcCCCcccceecCCCCCCHHH
Confidence 76543 57999999999999853211 00000000000 0000 00000000000 00011111234567
Q ss_pred HHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 315 EFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 315 ~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
++++|+++|++|.+|..+ .+|++++++|++|+++|+++| ++|.|.
T Consensus 307 ~~~~f~~ai~~~~~~~~~-~~dal~~~~ii~A~~~Sa~~g-~~V~l~ 351 (359)
T 3e18_A 307 FYNNFVDVLNNTSEPIVQ-NEEVYQVLKLIEAIFEAAETN-RTVHSI 351 (359)
T ss_dssp HHHHHHHHHTTSSCCSSC-HHHHHHHHHHHHHHHHHHHHT-SCEEC-
T ss_pred HHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhhC-cEEEEe
Confidence 789999999987776555 778999999999999999999 999874
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-56 Score=415.64 Aligned_cols=334 Identities=16% Similarity=0.150 Sum_probs=267.6
Q ss_pred CCceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 5 SQAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|++++||||||+|.+|.. |++.++++|+++|++|||+++++++ ++++ ++.+|+|++++|+++++|+|+|+||+
T Consensus 4 M~~~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~---~~~~~~~~~~ll~~~~vD~V~i~tp~ 77 (352)
T 3kux_A 4 MADKIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADWP---AIPVVSDPQMLFNDPSIDLIVIPTPN 77 (352)
T ss_dssp TTCCEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTCS---SCCEESCHHHHHHCSSCCEEEECSCT
T ss_pred ccCCceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhCC---CCceECCHHHHhcCCCCCEEEEeCCh
Confidence 446899999999999996 9999999999999999999998776 3443 34789999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
..|++++++||++||||+||||++.+++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..+++.+.
T Consensus 78 ~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i-~~g~iG~i~~~~~~~~ 156 (352)
T 3kux_A 78 DTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLL-AEGSLGNVVYFESHFD 156 (352)
T ss_dssp TTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHH-HHTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHH-hcCCCCceEEEEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999999 8899999999999887
Q ss_pred ecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 164 FAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
...+. ...+|+.++.. |||.|.|+|+|.+|+++|++| +|++|++.........+.+|++.++++| +|..++++.
T Consensus 157 ~~~~~--~~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G--~p~~v~a~~~~~~~~~~~~d~~~~~l~~-~g~~~~~~~ 230 (352)
T 3kux_A 157 RYRPE--IRQRWREQAGA-GGGIWYDLGPHLLDQALQLFG--LPETLNVDLGMLRPGSQSVDYFHAVLSY-PGQRVVLHS 230 (352)
T ss_dssp CBCCS--SCSSCSCC----CBCHHHHHHHHHHHHHHHHHC--CCSEEEEEEECCSTTCCSBCEEEEEEEE-TTEEEEEEE
T ss_pred ccCCC--CCcccccCCCC-CCceeehhhhHHHHHHHHHhC--CCeEEEEEEEEecCCCCcccEEEEEEEE-CCEEEEEEE
Confidence 64432 24568887765 459999999999999999999 6999999976555566789999999999 899999999
Q ss_pred eeeeCC-ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCC----------cceeeecCCchhHHH
Q 018020 244 SFLANM-TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLP----------SEHVVTTDIPQEACM 312 (362)
Q Consensus 244 ~~~~~~-~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 312 (362)
++..+. ..+++|+|++|++.+++...... .+. .+ .......|.... ..............|
T Consensus 231 s~~~~~~~~~~~i~G~~G~~~~~~~~~~~~----~~~--~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (352)
T 3kux_A 231 TVLAAAETARYIVHGTQGSYIKFGVDPQED----RLK--AG--ERLPQADWGYDMRDGIVTLSHDNVLTEKPLLTLPGNY 302 (352)
T ss_dssp ESBCCSCCCSEEEEESSEEEEECSCCSHHH----HHH--TT--CCSCCTTTTCCCCCEEEEEESSSCEEEEEECCCCCCT
T ss_pred EeecCCCCCEEEEEeCCcEEEEeCCChhHH----HHh--cC--CCCCCcccCcCCCCCeeEeccCCcceeeeccCCCCCH
Confidence 988754 45799999999999864321000 000 00 000000111110 000000001112357
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 313 VREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 313 ~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
..++.+|+++|++|.++.. +.++++++++|++|+++|+++| ++|+|+
T Consensus 303 ~~~~~~f~~ai~~~~~~~~-~~~d~~~~~~i~~a~~~Sa~~g-~~V~l~ 349 (352)
T 3kux_A 303 PAYYAGIRDAIWGTAPNPV-PATEAIKVMELIELGIASDQQK-KALPII 349 (352)
T ss_dssp HHHHHHHHHHHTTSSCCSS-BHHHHHHHHHHHHHHHHHHHHT-SCEECC
T ss_pred HHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHHHhcC-CEEEee
Confidence 8899999999998876655 4788999999999999999999 999874
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=415.60 Aligned_cols=320 Identities=21% Similarity=0.295 Sum_probs=268.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||||||+|.||..|++.+++.+++++++|||++++++++++++++++ ..|+|++++++++++|+|+|+||+..|
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~~D~V~i~tp~~~h 80 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLP---KAYDKLEDMLADESIDVIYVATINQDH 80 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCS---CEESCHHHHHTCTTCCEEEECSCGGGH
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEECCCcHHH
Confidence 58999999999999999999998899999999999999999999999975 689999999999899999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
.++++.|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+.++.
T Consensus 81 ~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i-~~g~iG~i~~v~~~~~~~~ 159 (329)
T 3evn_A 81 YKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLL-ASGEIGEVISISSTTAYPN 159 (329)
T ss_dssp HHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHH-HTTTTCSEEEEEEEEECTT
T ss_pred HHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHH-hCCCCCCeEEEEEEeccCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999887643
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEeee
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 246 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~ 246 (362)
+...+|+.++.. |||+|.|+|+|.+|+++|++|. +|++|++.. .....+.+|++.++++|+||+++++++++.
T Consensus 160 ---~~~~~w~~~~~~-gGG~l~d~g~H~id~~~~l~G~-~~~~v~~~~--~~~~~~~~d~~~~~l~~~~G~~~~~~~s~~ 232 (329)
T 3evn_A 160 ---IDHVTWFRELEL-GGGTVHFMAPYALSYLQYLFDA-TITHASGTA--TFPKGQSDSQSKLLLQLSNGVLVDIFLTTR 232 (329)
T ss_dssp ---GGGSTTTTCGGG-TCSHHHHHHHHHHHHHHHHTTC-CEEEEEEEE--ECCTTSCCSEEEEEEEETTSCEEEEEEESS
T ss_pred ---CCCcccccCccc-CCcHHHHHHHHHHHHHHHHhCC-CceEEEEEE--EeCCCCcceEEEEEEEECCCCEEEEEEEcc
Confidence 234578887776 5599999999999999999994 477888875 234457899999999999999999999998
Q ss_pred eCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhhcC
Q 018020 247 ANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKNG 326 (362)
Q Consensus 247 ~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g 326 (362)
.+...+++|+|++|++.+++.... ....+....+ ... ....+..+.|..++.+|+++|++|
T Consensus 233 ~~~~~~~~i~G~~G~i~~~~~~~~---~~~~~~~~~g--------------~~~--~~~~~~~~~~~~e~~~f~~~i~~g 293 (329)
T 3evn_A 233 LNLPHEMIIYGTEGRLIIPHFWKT---THAKLVRNDT--------------SAR--TIQVDMVSDFEKEAYHVSQMILEG 293 (329)
T ss_dssp SCCCCEEEEEETTEEEEEETTTSC---SEEEEEESSS--------------CEE--EEECCCSCTTHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEEeCceEEEECCCCCC---CeEEEEECCC--------------eeE--EEEcCCCCCCHHHHHHHHHHHHcC
Confidence 888889999999999999853211 1111111100 000 011222345789999999999987
Q ss_pred CC-CCCCchHhHHHHHHHHHHHHHHHhhCCcc
Q 018020 327 SK-PEQKWPIISRKTQLIIDAVKTSIERGFEP 357 (362)
Q Consensus 327 ~~-~~~~~~e~~l~~~~i~~a~~~S~~~g~~~ 357 (362)
.+ +...+.++++++++|++++++|++++ ++
T Consensus 294 ~~~~~~~~~~~~l~~~~ii~ai~~s~~~~-~~ 324 (329)
T 3evn_A 294 QRVSHIMTPQLTLSGVKIIEDLYRSWGKE-GH 324 (329)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHHHTTCC-C-
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 63 34445788999999999999999998 54
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-56 Score=417.27 Aligned_cols=333 Identities=17% Similarity=0.168 Sum_probs=262.8
Q ss_pred ceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+++||||||+|.+|.. |++.++++|+++|++|||+++++ ++++++. +.+|+|++++|+++++|+|+|+||+..
T Consensus 4 ~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~---~~~~~~~---~~~~~~~~~ll~~~~vD~V~i~tp~~~ 77 (358)
T 3gdo_A 4 DTIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE---VKRDFPD---AEVVHELEEITNDPAIELVIVTTPSGL 77 (358)
T ss_dssp TCEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH---HHHHCTT---SEEESSTHHHHTCTTCCEEEECSCTTT
T ss_pred CcceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH---HHhhCCC---CceECCHHHHhcCCCCCEEEEcCCcHH
Confidence 5899999999999996 89999999999999999999865 5566742 478999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|.+++++||++||||+||||++.+++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..+++.+...
T Consensus 78 H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~i~~~~~~~~~~ 156 (358)
T 3gdo_A 78 HYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLI-SEGSLEDINTYQVSYNRY 156 (358)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHH-HTTSSCSCCEEEEECCCB
T ss_pred HHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHH-hcCCCCceEEEEEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999987654
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.+. ....|+..+.. |||.|.|+|+|.+|+++|++| +|++|++.........+.+|++.++++|+| ..+++.+++
T Consensus 157 ~~~--~~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G--~~~~V~a~~~~~~~~~~~~d~~~~~l~~~~-~~~~~~~s~ 230 (358)
T 3gdo_A 157 RPE--VQARWREKEGT-ATGTLYDLGSHIIDQTLHLFG--MPKAVTANVMAQRENAETVDYFHLTLDYGK-LQAILYGGS 230 (358)
T ss_dssp CCC--C-----------CCSHHHHTHHHHHHHHHHHHC--CCSEEEEEEECCSTTCCSCCEEEEEEEETT-EEEEEEECS
T ss_pred CCC--CCcccccCCCC-CCceeeeehhHHHHHHHHHcC--CCeEEEEEEEeecCCCCcCceEEEEEEECC-EEEEEEEEe
Confidence 432 23458877655 569999999999999999999 799999997655555678999999999998 889999988
Q ss_pred eeCCc-eeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcc------------eeeecCCchhHHH
Q 018020 246 LANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSE------------HVVTTDIPQEACM 312 (362)
Q Consensus 246 ~~~~~-~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 312 (362)
..+.. .+++|+|++|++.+++..... ..+.. . .......|...... ..........+.|
T Consensus 231 ~~~~~~~~~~i~G~~G~~~~~~~~~~~----~~~~~--~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 302 (358)
T 3gdo_A 231 IVPANGPRYQIHGKDSSFIKYGIDGQE----DALRA--G--RKPEDDSWGADVPEFYGKLTTIRGSDKKTETIPSVNGSY 302 (358)
T ss_dssp BCSSCCCSEEEECSSEEEEECCCCSHH----HHHHT--T--CCCCSTTTTCCCGGGCEEEEEEETTEEEEEEECCCCCCT
T ss_pred ccCCCCCEEEEEeCceEEEEeCCChHH----HHHhc--C--CCCCccccCcCcccccceEEecCCCceeeeeecCCCCcH
Confidence 77654 479999999999986432100 00000 0 00000111111000 0000001122457
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 313 VREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 313 ~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
..++.+|+++|++|.++..+ .++++++++|++|+++|+++| ++|+|.|
T Consensus 303 ~~~~~~f~~ai~~g~~~~~~-~~da~~~~~i~~a~~~Sa~~g-~~V~~~~ 350 (358)
T 3gdo_A 303 LTYYRKIAESIREGAALPVT-AEEGINVIRIIEAAMESSKEK-RTIMLEH 350 (358)
T ss_dssp HHHHHHHHHHHHHCCCCSSC-HHHHHHHHHHHHHHHHHHHHT-BCEECC-
T ss_pred HHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHhcC-CEEEeee
Confidence 88999999999988776654 777999999999999999999 9999875
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-56 Score=418.10 Aligned_cols=338 Identities=19% Similarity=0.191 Sum_probs=261.8
Q ss_pred CCccCCceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 1 MATESQAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|+| +++++||||||+|.+|.. |++.+++.|+++|++|||+++++++ ++++ ++.+|+|++++|+++++|+|+|
T Consensus 1 M~~-~~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~---~~~~~~~~~~ll~~~~~D~V~i 73 (364)
T 3e82_A 1 MSL-SNNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK---RDLP---DVTVIASPEAAVQHPDVDLVVI 73 (364)
T ss_dssp -------CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---HHCT---TSEEESCHHHHHTCTTCSEEEE
T ss_pred CCC-CCCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---hhCC---CCcEECCHHHHhcCCCCCEEEE
Confidence 554 346899999999999996 9999999999999999999997755 4553 2478999999999999999999
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMH 159 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~ 159 (362)
+||+..|.+++++||++||||+||||++.+++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..++
T Consensus 74 ~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i-~~g~iG~i~~~~ 152 (364)
T 3e82_A 74 ASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVI-EQGTLGAVKHFE 152 (364)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHH-HHTTTCSEEEEE
T ss_pred eCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHH-HcCCCcceEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 899999999999
Q ss_pred EEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEE
Q 018020 160 SCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~ 239 (362)
+.+....+.. ..+|+.++.. |||.|.|+|+|.+|+++|++| +|++|++.........+.+|++.++++|+| ..+
T Consensus 153 ~~~~~~~~~~--~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G--~p~~V~a~~~~~~~~~~~~d~~~~~l~~~~-~~~ 226 (364)
T 3e82_A 153 SHFDRFRPEV--RVRWREQNVP-GSGLWFDLGPHLIDQALQLFG--LPQSVQGNIATLRDGAEINDWAHVVLNYPA-HKV 226 (364)
T ss_dssp EEEECBCCCC--------------CCHHHHHHHHHHHHHHHHHC--CCSEEEEEEECCSTTCCSCCEEEEEEECSS-CEE
T ss_pred EEeeccCCCC--CcccccCCCC-CCChHHhhhhHHHHHHHHHhC--CCeEEEEEEEeecCCCCcccEEEEEEEECC-EEE
Confidence 9887644322 3468877755 559999999999999999999 699999997555555678999999999998 889
Q ss_pred EEEEeeeeCCc-eeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCccee-------eecCCchhHH
Q 018020 240 TFSCSFLANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHV-------VTTDIPQEAC 311 (362)
Q Consensus 240 ~~~~~~~~~~~-~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 311 (362)
++++++..+.. .+++|+|++|++.+++..... ..+. .+ .......|........ ........+.
T Consensus 227 ~~~~s~~~~~~~~~~~i~G~~G~~~~~~~~~~~----~~~~--~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (364)
T 3e82_A 227 ILHCSMLVAGGSSRFTVHGDKGSVIKARADQQE----SQLL--AG--VVPGSADWGQDDDPLVIYDASLQAHAQATPQGD 298 (364)
T ss_dssp EEEEESBCCSCCCSEEEEESSEEEEECSCCCHH----HHHH--HT--CCTTSTTTTCCCSCEEEEETTSCEEEECCCCCC
T ss_pred EEEEecccCCCCCEEEEEeCCEEEEEecCChhH----HHHh--cC--CCCCccccccCCCCceeecCCccceecCCCCCC
Confidence 99999877654 489999999999987432100 0000 00 0000011211100000 0000111235
Q ss_pred HHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 312 MVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 312 ~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
|..++.+|+++|++|.++.. +.++++++++|++|+++|+++| ++|+|++
T Consensus 299 ~~~~~~~f~~ai~~g~~~~~-~~~dal~~~~i~~A~~~Sa~~g-~~V~l~l 347 (364)
T 3e82_A 299 QRQYYMLIRDALKGQIANPV-PPVEALAVMAVLEAAVRSAESG-MVQTLDL 347 (364)
T ss_dssp THHHHHHHHHHHTTSSCCSS-CHHHHHHHHHHHHHHHHHHHHS-BCBCCCC
T ss_pred HHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhcC-CEEEEEc
Confidence 78899999999998877765 4788999999999999999999 9999864
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-55 Score=411.11 Aligned_cols=323 Identities=18% Similarity=0.215 Sum_probs=268.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||||||+|.||..|++.+. +.+++++++|||+++++++++++++|+. +..|+|++++|+++++|+|+|+||+.
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~--~~~~~~~~~ll~~~~~D~V~i~tp~~ 98 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIE--AKDYNDYHDLINDKDVEVVIITASNE 98 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCC--CEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCC--CeeeCCHHHHhcCCCCCEEEEcCCcH
Confidence 56899999999999999999998 7899999999999999999999999852 36899999999998999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE-EEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL-MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~-~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
.|.+++++|+++||||+||||++.+++++++|.++++++|+.+ ++++++||+|.++++|++| ++|.||+|..+++.+.
T Consensus 99 ~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~v~~~~~ 177 (357)
T 3ec7_A 99 AHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNII-DSGEIGQPLMVHGRHY 177 (357)
T ss_dssp GHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHH-HHTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHH-hcCCCCCeEEEEEEEe
Confidence 9999999999999999999999999999999999999999987 9999999999999999999 8999999999998765
Q ss_pred ecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeecccc-CCCCeeEeeEEEEEeCCCcEEEEE
Q 018020 164 FAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVL-NEAGVILSCGASLHWDDGRVATFS 242 (362)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~-~~~~~~d~~~~~~~~~~G~~~~~~ 242 (362)
.+..+ .+|+ +||.|.|+|+|.+|+++|++|. +|++|++...... ...+.+|.+.++++|+||++++++
T Consensus 178 ~~~~p----~~w~------ggg~l~d~g~H~iDl~~~l~G~-~~~~V~a~~~~~~~~~~~~~D~~~~~l~~~~G~~~~~~ 246 (357)
T 3ec7_A 178 NASTV----PEYK------TPQAIYETLIHEIDVMHWLLNE-DYKTVKVYFPRQSSLVTTLRDPQLVVMETTSGINIVVE 246 (357)
T ss_dssp CSCCC----TTCC------TTHHHHTTHHHHHHHHHHHHTC-CEEEEEEECCSCCTTCCSSCCSEEEEEEETTCCEEEEE
T ss_pred CCCCC----cccc------CCchhhhcccHHHHHHHHHcCC-CceEEEEEEecccccCCCcceeEEEEEEECCCCEEEEE
Confidence 44322 2343 5689999999999999999994 4899999853322 234678899999999999999999
Q ss_pred EeeeeCC--ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHH
Q 018020 243 CSFLANM--TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLV 320 (362)
Q Consensus 243 ~~~~~~~--~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (362)
+++..+. ..+++|+|++|++.+++.. ...+..... ........| .....+.|..++.+|+
T Consensus 247 ~s~~~~~~~~~~~~i~G~~G~i~~~~~~------~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~F~ 308 (357)
T 3ec7_A 247 VFVNCQYGYDIHCDVTGEKGMAELPTVA------SAAVRKAAK-YSTDILVDW-----------KQRFIDAYDIEFQDFF 308 (357)
T ss_dssp EETTCSSCCEEEEEEEESSEEEECCCCC------CCEEEETTE-EEEECCCCG-----------GGTSHHHHHHHHHHHH
T ss_pred EEeccCCCCCcEEEEEECCcEEEecCCC------cEEEEcCCC-cccccCCcc-----------hhhhhHHHHHHHHHHH
Confidence 9987764 3579999999999997421 111111110 000000011 1123567899999999
Q ss_pred HhhhcC-CCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 321 ANIKNG-SKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 321 ~~i~~g-~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
++|++| +++.+ +.+|++++++|++|+++|+++| ++|+|++
T Consensus 309 ~~i~~g~~~~~~-~~~d~~~~~~i~~a~~~Sa~~G-~~V~l~~ 349 (357)
T 3ec7_A 309 DRLNAGLPPAGP-TSWDGYLAAVTADACVKSQETG-NTEIVEL 349 (357)
T ss_dssp HHHHTTCCCCSS-CHHHHHHHHHHHHHHHHHHHHS-SCEECCC
T ss_pred HHHHcCCCCCCC-CHHHHHHHHHHHHHHHHHHHhC-CeEEEec
Confidence 999988 66655 4788999999999999999999 9999863
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=418.04 Aligned_cols=342 Identities=15% Similarity=0.151 Sum_probs=272.9
Q ss_pred CCceeEEEEEe-ccHHHHH-HH----HHHhcCCCcEEE---------EEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh
Q 018020 5 SQAAIRFGIIG-AADIARK-LS----RAITLAPNAVLS---------AVASRSLEKATNFAKANNFPPDAKVYGSYEALL 69 (362)
Q Consensus 5 ~~~~~~v~iiG-~G~~g~~-~~----~~~~~~~~~~vv---------~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l 69 (362)
+++++|||||| +|.+|.. |+ ..+++.++++++ ++||+++++++++++++|++ .+|+|+++||
T Consensus 3 ~~~~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~---~~~~~~~~ll 79 (383)
T 3oqb_A 3 TTQRLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIA---RWTTDLDAAL 79 (383)
T ss_dssp CCEEEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCC---CEESCHHHHH
T ss_pred CCceeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCC---cccCCHHHHh
Confidence 35789999999 9999998 98 888888766654 79999999999999999986 6899999999
Q ss_pred cCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCC
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDP 149 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~ 149 (362)
+++++|+|+|+||+..|++++++||++||||+||||++.+++++++|.++|+++|+.+++++++||+|.++++|++| ++
T Consensus 80 ~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i-~~ 158 (383)
T 3oqb_A 80 ADKNDTMFFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFLR-DS 158 (383)
T ss_dssp HCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHH-HT
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHHH-Hc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CCccceEEEEEEeeecCCc-cc---ccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC------
Q 018020 150 QRFGQLRTMHSCFSFAGDA-EF---LKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN------ 219 (362)
Q Consensus 150 g~iG~i~~i~~~~~~~~~~-~~---~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~------ 219 (362)
|.||+|..+++.+.++... .| ...+|+.++.. |||.+.|+|+|.+|+++|++| +|++|++.......
T Consensus 159 g~iG~i~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~-ggG~l~d~g~H~id~~~~l~G--~~~~v~a~~~~~~~~~~~~~ 235 (383)
T 3oqb_A 159 GFFGRILSVRGEFGYWVFEGGWQEAQRPSWNYRDED-GGGIILDMVCHWRYVLDNLFG--NVQSVVCIGNTDIPERFDEQ 235 (383)
T ss_dssp TTTSSEEEEEEEEECCCCCSSSSCCSSCGGGGCTTT-TCCHHHHHHHHHHHHHHHHTC--CEEEEEEEEECSCSEEECTT
T ss_pred CCCCCcEEEEEEeccccccccccccCCCCccccccc-CCceeeehhhHHHHHHHHHcC--CCeEEEEEEeecccccccCC
Confidence 9999999999988653221 11 23467777665 559999999999999999999 69999998643322
Q ss_pred ----CCCeeEeeEEEEEeCCCcEEEEEEeeeeCCc----eeEEEEeccceEEEcceeccCC---CCcceEEecccccccc
Q 018020 220 ----EAGVILSCGASLHWDDGRVATFSCSFLANMT----MDITATGTNGSLQLHDFIIPFR---EEEASYFTNTRCFFND 288 (362)
Q Consensus 220 ----~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~~----~~~~v~G~~G~i~~~~~~~~~~---~~~~~~~~~~~~~~~~ 288 (362)
..+.+|++.++++|+||++++++++|..+.. .+++|+|++|++.++....... ......+.........
T Consensus 236 g~~~~~~~~D~~~~~l~~~~G~~~~~~~s~~~~~~~~~~~~~~i~Gt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (383)
T 3oqb_A 236 GKKYKATADDSAYATFQLEGGVIAHINMSWVTRVYRDDLVTFQVDGTHGSAVAGLSDCMIQARQATPRPVWNPDEKRLHD 315 (383)
T ss_dssp SCEEECCSCCEEEEEEEETTTEEEEEEEESSCCCCSSSSEEEEEEESSEEEEECSSCEEEEEGGGCCCCCCCC----CCC
T ss_pred CceeccccCCcEEEEEEeCCCCEEEEEEEeecccCCCCceEEEEEecccEEEEecccccccccCCCCccccCCCCCcccc
Confidence 2357899999999999999999999987542 4699999999999864211000 0000000000000000
Q ss_pred cccccccCCcceeeecCCchhHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 289 LVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
....|...+ ......+.|..++.+|+++|++|.++..+ .+|++++++|++|+++|+++| ++|+|.
T Consensus 316 ~~~~~~~~~------~~~~~~~~~~~~~~~F~~ai~~g~~~~~~-~~d~~~~~~i~~a~~~Sa~~g-~~V~l~ 380 (383)
T 3oqb_A 316 FYGDWQKLP------DNVSYDNGFKEQWEMFIRHVYEDAPYKFT-LLEGAKGVQLAECALKSWKER-RWIDVA 380 (383)
T ss_dssp GGGGSEECC------CCSCCCCHHHHHHHHHHHHHHHCCCCCCS-HHHHHHHHHHHHHHHHHHHHT-BCEECC
T ss_pred cccccccCC------CCCCccchHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHHHhhC-CeEecc
Confidence 001111100 01123456889999999999988877665 777999999999999999999 999874
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-54 Score=406.04 Aligned_cols=320 Identities=19% Similarity=0.210 Sum_probs=267.9
Q ss_pred eeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||||||+|.||..|++.+. +.++++++++||+++++++++++++|++ +..|+|++++++++++|+|+|+||+..|
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~--~~~~~~~~~ll~~~~~D~V~i~tp~~~h 79 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLN--ATVYPNDDSLLADENVDAVLVTSWGPAH 79 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCC--CEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC--CeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence 589999999999999999998 7899999999999999999999999852 3689999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE-EEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL-MDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~-~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
.+++++|+++||||+||||++.+++++++|.++++++|+.+ ++++++||+|.++++|++| ++|.||+|..+++.+..+
T Consensus 80 ~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~i~~v~~~~~~~ 158 (344)
T 3mz0_A 80 ESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEAL-DNHVIGEPLMIHCAHRNP 158 (344)
T ss_dssp HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHH-HTTTTSSEEEEEEEEECS
T ss_pred HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHH-HcCCCCCcEEEEEEecCC
Confidence 99999999999999999999999999999999999999988 9999999999999999999 899999999999876544
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC--CCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN--EAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~--~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
..+ .+|+ +||.|.|+|+|.+|+++|++|. +|++|++....... ..+.+|.+.++++|+||+++++++
T Consensus 159 ~~~----~~w~------ggg~l~d~g~H~id~~~~l~G~-~~~~V~a~~~~~~~~~~~~~~D~~~~~l~~~~G~~~~~~~ 227 (344)
T 3mz0_A 159 TVG----DNYT------TDMAVVDTLVHEIDVLHWLVND-DYESVQVIYPKKSKNALPHLKDPQIVVIETKGGIVINAEI 227 (344)
T ss_dssp CCC----TTCC------TTHHHHTTTHHHHHHHHHHHTC-CEEEEEEECCSCCTTSCTTCCCSEEEEEEETTCCEEEEEE
T ss_pred CCC----cccc------CCchhhhhhhHHHHHHHHhcCC-CcEEEEEEEeccccccCCCCCceEEEEEEECCCCEEEEEE
Confidence 322 2343 5689999999999999999994 48999998543322 346789999999999999999999
Q ss_pred eeeeCC--ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHH
Q 018020 244 SFLANM--TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVA 321 (362)
Q Consensus 244 ~~~~~~--~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (362)
++..+. ..+++|+|++|++.+++.. ...+..... ........| .....+.|..++.+|++
T Consensus 228 s~~~~~~~~~~~~i~G~~G~i~~~~~~------~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~~~~~~f~~ 289 (344)
T 3mz0_A 228 YVNCKYGYDIQCEIVGEDGIIKLPEPS------SISLRKEGR-FSTDILMDW-----------QRRFVAAYDVEIQDFID 289 (344)
T ss_dssp ETTCSSCCEEEEEEEESSCEEECCCCC------CCEEEETTE-EEECCCSCH-----------HHHSHHHHHHHHHHHHH
T ss_pred EeccCCCCcceEEEEeCCCEEEEcCCC------cEEEEeCCC-ccccccCch-----------hhhhhHHHHHHHHHHHH
Confidence 987764 3479999999999997421 111111110 000000000 01224678999999999
Q ss_pred hh-hcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 322 NI-KNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 322 ~i-~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+| ++|.++.++ .+|++++++|++|+++|+++| ++|+|+
T Consensus 290 ~i~~~g~~~~~~-~~d~~~~~~i~~a~~~Sa~~g-~~V~l~ 328 (344)
T 3mz0_A 290 SIQKKGEVSGPT-AWDGYIAAVTTDACVKAQESG-QKEKVE 328 (344)
T ss_dssp HHHHHSSCCSSC-HHHHHHHHHHHHHHHHHHHHC-SCEECC
T ss_pred HHHhCCCCCCCC-HHHHHHHHHHHHHHHHHHHhC-CcEEEe
Confidence 99 888777655 777999999999999999999 999986
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=404.80 Aligned_cols=323 Identities=23% Similarity=0.325 Sum_probs=267.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||||+|.||..|++.+++.+ ++++++|||+++++++++++++|++ .+|+|++++|+++++|+|+|+||+..
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~---~~~~~~~~ll~~~~vD~V~i~tp~~~ 78 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIP---KAYGSYEELAKDPNVEVAYVGTQHPQ 78 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCS---CEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEECCCcHH
Confidence 589999999999999999999887 4799999999999999999999986 68999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|++++++||++||||+||||++.+++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..+++.+...
T Consensus 79 H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~i~~v~~~~~~~ 157 (334)
T 3ohs_X 79 HKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVL-AQGTLGDLRVARAEFGKN 157 (334)
T ss_dssp HHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHH-HHTTTCSEEEEEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHH-hcCCCCCeEEEEEEccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999998754
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.+. .+|..++.. |||.|.|+|+|.+|+++|++|...|++|++... ..+.+.+|++.++++|+||+++++++++
T Consensus 158 ~~~----~~~~~~~~~-gGG~l~d~g~H~id~~~~l~G~~~p~~v~a~~~--~~~~~~~d~~~~~l~~~~G~~~~~~~s~ 230 (334)
T 3ohs_X 158 LTH----VPRAVDWAQ-AGGALLDLGIYCVQFISMVFGGQKPEKISVMGR--RHETGVDDTVTVLLQYPGEVHGSFTCSI 230 (334)
T ss_dssp CTT----CHHHHCTTT-TCSHHHHTHHHHHHHHHHHTTTCCCSEEEEEEE--ECTTSSEEEEEEEEEETTTEEEEEEEES
T ss_pred CCC----cCcCCCccc-CCCCHHHhhhHHHHHHHHHhCCCCCeEEEEEEE--ECCCCcceEEEEEEEeCCCCEEEEEEEe
Confidence 321 123345555 559999999999999999998546999999853 3345789999999999999999999999
Q ss_pred eeCCceeEEEEeccceEEE-cceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhh
Q 018020 246 LANMTMDITATGTNGSLQL-HDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIK 324 (362)
Q Consensus 246 ~~~~~~~~~v~G~~G~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 324 (362)
..+...+++|+|++|++.+ ++.. ....+..... .. .+..+.... ...+...+.|..++.+|+++|+
T Consensus 231 ~~~~~~~~~i~G~~G~i~~~~~~~-----~~~~~~~~g~--~~----~~~~~~~~~--~~~~~~~~~~~~e~~~f~~~i~ 297 (334)
T 3ohs_X 231 TAQLSNTASVSGTKGMAQLLNPCW-----CPTELVVKGE--HK----EFLLPPVPK--NCNFDNGAGMSYEAKHVRECLR 297 (334)
T ss_dssp SSCCCCCEEEEETTEEEEECSSTT-----SCCEEEETTE--EE----ECCCCSCCC--SCSSTTGGGHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEeeeEEEEECCCCC-----CCeEEEECCe--EE----EEeCCCccc--ccccCCCCccHHHHHHHHHHHH
Confidence 8888888999999999999 3221 1111111111 00 011111000 1123345678999999999999
Q ss_pred cCC-CCCCCchHhHHHHHHHHHHHHHHHhhC
Q 018020 325 NGS-KPEQKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 325 ~g~-~~~~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
+|+ ++...+.++++++++|++++++|+.-.
T Consensus 298 ~g~~~~~~~~~~~~l~~~~i~~~i~~~~g~~ 328 (334)
T 3ohs_X 298 KGLKESPVIPLVESELLADILEEVRRAIGVT 328 (334)
T ss_dssp TTCSSCSSSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 886 344455788999999999999997543
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=417.41 Aligned_cols=339 Identities=20% Similarity=0.271 Sum_probs=277.5
Q ss_pred CCceeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-CCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 5 SQAAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-DAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+|+++||||||+|.||. .|++.+.+.++++|++|||+++++++.+++++|++. ++..|+|++++++++++|+|+|+||
T Consensus 80 ~~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp 159 (433)
T 1h6d_A 80 EDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP 159 (433)
T ss_dssp CCCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCC
Confidence 36789999999999997 899999988899999999999999999999999751 1237999999999889999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCF 162 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~ 162 (362)
+..|.++++.|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+
T Consensus 160 ~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~v~~~~ 238 (433)
T 1h6d_A 160 NSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLI-RENQLGKLGMVTTDN 238 (433)
T ss_dssp GGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHH-HTTSSCSEEEEEEEE
T ss_pred chhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHH-HcCCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999 899999999999987
Q ss_pred eecCCcccccCc-cCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEe-eccccC-C-CCeeEeeEEEEEeCCCcE
Q 018020 163 SFAGDAEFLKND-IRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAM-HGPVLN-E-AGVILSCGASLHWDDGRV 238 (362)
Q Consensus 163 ~~~~~~~~~~~~-w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~-~~~~~~-~-~~~~d~~~~~~~~~~G~~ 238 (362)
.+.... +.+.+ |+.++...|||.|.|+|+|.+|+++|++|. +|++|++. ...... . .+++|++.++++|+||.+
T Consensus 239 ~~~~~~-~~~~~~wr~~~~~~gGG~l~d~g~H~lD~~~~l~G~-~p~~V~a~~~~~~~~~~~~~veD~~~~~l~f~~G~~ 316 (433)
T 1h6d_A 239 SDVMDQ-NDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGE-EPIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGAL 316 (433)
T ss_dssp ECCCCT-TSHHHHGGGCHHHHSSSHHHHTHHHHHHHHHHHHTS-CEEEEEEEEECCTTCGGGSSSCSEEEEEEEETTSCE
T ss_pred eccccc-CCCCcccccccccCCCCceecccchHHHHHHHHcCC-CCEEEEEEecccCCCccccccCceEEEEEEECCCCE
Confidence 764321 12345 888777746699999999999999999994 48999998 332221 1 267899999999999999
Q ss_pred EEEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHH
Q 018020 239 ATFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSR 318 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
++++++|......+++|+|++|++.+++..... ............ ..++.. ....+..+.|..++.+
T Consensus 317 ~~l~~s~~~~~~~~~~I~Gt~G~i~~~~~~~~~---~~~~~~~~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~ 383 (433)
T 1h6d_A 317 SHGASSYSTTTTSRFSVQGDKAVLLMDPATGYY---QNLISVQTPGHA---NQSMMP-------QFIMPANNQFSAQLDH 383 (433)
T ss_dssp EEEEEESSSCCEEEEEEEESSCEEEESSSSCSS---CCCEEEEETTEE---EEECCC-------SSCCSSCCHHHHHHHH
T ss_pred EEEEEEeccCCCcEEEEEecCeEEEEECCcccc---ccEEEEeccccc---cCCcee-------eccCCCccHHHHHHHH
Confidence 999999887767789999999999997532111 111111100000 000000 0112234567899999
Q ss_pred HHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 319 LVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 319 ~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
|+++|++|.++..+ .+++++++++++++++|+++| ++|+++
T Consensus 384 F~~~I~~g~~~~~~-~~d~l~~~~ii~a~~~Sa~~g-~~V~l~ 424 (433)
T 1h6d_A 384 LAEAVINNKPVRSP-GEEGMQDVRLIQAIYEAARTG-RPVNTD 424 (433)
T ss_dssp HHHHHHTTCCCSSB-HHHHHHHHHHHHHHHHHHHHS-SCEECC
T ss_pred HHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHHHhcC-CeEEcC
Confidence 99999988766554 778999999999999999998 999875
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-54 Score=404.73 Aligned_cols=325 Identities=18% Similarity=0.233 Sum_probs=269.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
++||||||+|.||..|++.+.+.+++++++|||++++++++++++++++ ..|+|++++++++++|+|+|+||+..|.
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~~~D~V~i~tp~~~h~ 78 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVE---KAYKDPHELIEDPNVDAVLVCSSTNTHS 78 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCS---EEESSHHHHHHCTTCCEEEECSCGGGHH
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCC---ceeCCHHHHhcCCCCCEEEEcCCCcchH
Confidence 5899999999999999999999999999999999999999999999975 6899999999988999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecCC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD 167 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~ 167 (362)
+++..|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+..+.+
T Consensus 79 ~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~iG~i~~~~~~~~~~~~ 157 (344)
T 3ezy_A 79 ELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAV-ENGTIGKPHVLRITSRDPAP 157 (344)
T ss_dssp HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHH-HTTTTSSEEEEEEEEECSSC
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHH-HcCCCCCeEEEEEEeeCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999998654432
Q ss_pred cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC----CCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 168 AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN----EAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 168 ~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~----~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
+. |.+. . .+||.|.|+|+|.+|+++|++|. +|++|++....... ..+..|++.++++|+||++++++.
T Consensus 158 ~~-----~~~~-~-~~GG~l~d~g~H~lDl~~~l~G~-~~~~V~a~~~~~~~~~~~~~~~~D~~~~~l~~~~G~~~~~~~ 229 (344)
T 3ezy_A 158 PP-----LDYI-R-VSGGIFLDMTIHDFDMARYIMGE-EVEEVFADGSVLVDEEIGKAGDVDTAVVVLRFKSGALGVIDN 229 (344)
T ss_dssp CC-----HHHH-H-TTTCHHHHTHHHHHHHHHHHHSS-CEEEEEEEEECCSCHHHHHTTCCSEEEEEEEETTSCEEEEEE
T ss_pred CC-----cccc-c-CCCceEecccchHHHHHHHHcCC-CCeEEEEEeccccccccccCCCCceEEEEEEECCCCEEEEEE
Confidence 21 2211 1 35699999999999999999995 59999998643322 123458899999999999999999
Q ss_pred eeeeCCc--eeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHH
Q 018020 244 SFLANMT--MDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVA 321 (362)
Q Consensus 244 ~~~~~~~--~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (362)
++..+.. .+++|+|++|++.+++.. .....+....+. .. ..... .......+.|..++.+|++
T Consensus 230 s~~~~~~~~~~~~i~G~~G~i~~~~~~----~~~~~~~~~~g~-~~--------~~~~~--~~~~~~~~~~~~~~~~f~~ 294 (344)
T 3ezy_A 230 SRRAVYGYDQRIEVFGSKGRIFADNVR----ETTVVLTDEQGD-RG--------SRYLY--FFLERYRDSYLEELKTFIK 294 (344)
T ss_dssp ESCCTTSCEEEEEEEETTEEEEECCCB----SCSEEEEETTEE-EE--------CCBCC--SHHHHHHHHHHHHHHHHHH
T ss_pred ecccCCCCceEEEEEECcEEEEEccCC----CceEEEEcCCCc-cc--------CCCcc--chhhhhhHHHHHHHHHHHH
Confidence 9987654 579999999999998532 111111111100 00 00000 0011234678999999999
Q ss_pred hhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 322 NIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 322 ~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+|++|.++..+ .+++++++++++|+++|+++| ++|+|.
T Consensus 295 ~i~~~~~~~~~-~~~~~~~~~i~~a~~~S~~~g-~~V~~~ 332 (344)
T 3ezy_A 295 NVKSGEPPAVS-GEDGKMALLLGYAAKKSLEEK-RSVKLE 332 (344)
T ss_dssp HHHHTCCCSSC-HHHHHHHHHHHHHHHHHHHHT-BCEEGG
T ss_pred HHhcCCCCCCC-HHHHHHHHHHHHHHHHHHHhC-CeEEec
Confidence 99988876665 777999999999999999998 999986
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-55 Score=414.08 Aligned_cols=334 Identities=13% Similarity=0.064 Sum_probs=266.4
Q ss_pred eeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||||||+|.+|. .|++.+++.|+++|++|||++ +++++++++++ +++..|+|++++|+++++|+|+|+||+..|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~-~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h 78 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKE-KGVNFTADLNELLTDPEIELITICTPAHTH 78 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHT-TTCEEESCTHHHHSCTTCCEEEECSCGGGH
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCC-CCCeEECCHHHHhcCCCCCEEEEeCCcHHH
Confidence 69999999999998 699999999999999999998 67888888765 245789999999999999999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
++++++||++||||+||||++.|++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|..+++.+.+..
T Consensus 79 ~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i-~~g~iG~i~~~~~~~~~~~ 157 (349)
T 3i23_A 79 YDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVV-EQGFLGEINEVETHIDYYR 157 (349)
T ss_dssp HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHH-HHTTTCSEEEEEEECCCBC
T ss_pred HHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHH-hcCCCCCEEEEEEEecccC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999876544
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEeee
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 246 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~ 246 (362)
+. .+|+..+ .+||.|.|+|+|.+|+++|++| +|++|++.........+.+|++.++++|+||..+++++++.
T Consensus 158 ~~----~~w~~~~--~ggG~l~d~g~H~id~~~~l~G--~p~~V~a~~~~~~~~~~~~d~~~~~l~~~~G~~~~~~~s~~ 229 (349)
T 3i23_A 158 PG----SITEQGP--KENGSFYGLGIHLMDRMIALFG--RPDQVTYDIRNNEVSEAVDNYFDVDLHYGSKLKVKVKTNHS 229 (349)
T ss_dssp TT----SCCSCCC--GGGSHHHHTHHHHHHHHHHHHC--CCSEEEECEECSSSTTSCCCEEEEEEEETTTEEEEEEECSB
T ss_pred Cc----hhhcccC--CCCCeehhhhhHHHHHHHHHhC--CCeEEEEEEEeeCCCCCcceEEEEEEEeCCCcEEEEEEecc
Confidence 32 4687766 4679999999999999999999 69999998655555567899999999999999999999987
Q ss_pred eCC-ceeEEEEeccceEEEcceeccCCCCcceEEeccccccccc-ccccc------cCCcceeeecCCchhHHHHHHHHH
Q 018020 247 ANM-TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDL-VTGWV------PLPSEHVVTTDIPQEACMVREFSR 318 (362)
Q Consensus 247 ~~~-~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
.+. ..+++|+|++|++.+.+...... ............+... ...|. ........ ......+.|..++++
T Consensus 230 ~~~~~~~~~i~G~~G~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~-~~~~~~~~~~~~~~~ 307 (349)
T 3i23_A 230 VASPYPRFIVHGSNGSFIKYGEDQQEN-DLKAGIMPDAPGFGEDSPMYYGEVTYRNGNGDWIKK-QIKTPVGDYGRYYDA 307 (349)
T ss_dssp CSSCCCSEEEEESSEEEEECSCCCHHH-HHTTTCCTTSTTTTCCCGGGCEEEEEECTTSCEEEE-EECCCCCCTTHHHHH
T ss_pred cCCCCCEEEEEecceEEEEcCCCchHH-HHhcCCCCCCCCCCCCchhhceEEEeccCCCceeee-ecCCCCCCHHHHHHH
Confidence 765 34799999999999865321000 0000000000000000 00000 00000000 001112357789999
Q ss_pred HHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcc
Q 018020 319 LVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEP 357 (362)
Q Consensus 319 ~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~ 357 (362)
|+++|++|+++..+ .++++++++|++|+++|+++| ++
T Consensus 308 f~~ai~~g~~~~~~-~~da~~~~~ii~a~~~Sa~~G-r~ 344 (349)
T 3i23_A 308 VYETLKNGAPQLVT-KEQALTNIEILEAGFLNPSPS-VY 344 (349)
T ss_dssp HHHHHHHCCCCSSC-HHHHHHHHHHHHHTTTSCSSE-EE
T ss_pred HHHHHhCCCCCCCC-HHHHHHHHHHHHHHHHhHHHH-Hh
Confidence 99999988776654 788999999999999999998 54
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-55 Score=410.25 Aligned_cols=324 Identities=15% Similarity=0.113 Sum_probs=259.6
Q ss_pred CCceeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 5 SQAAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
||+++||||||+|.++. .+++.++ .++++|++|||++++++++++++++.+ .+|+|++++|+++++|+|+|+||+
T Consensus 23 Mm~~irvgiiG~G~~~~~~~~~~~~-~~~~~lvav~d~~~~~a~~~a~~~~~~---~~~~~~~~ll~~~~vD~V~I~tp~ 98 (361)
T 3u3x_A 23 MMDELRFAAVGLNHNHIYGQVNCLL-RAGARLAGFHEKDDALAAEFSAVYADA---RRIATAEEILEDENIGLIVSAAVS 98 (361)
T ss_dssp ---CCEEEEECCCSTTHHHHHHHHH-HTTCEEEEEECSCHHHHHHHHHHSSSC---CEESCHHHHHTCTTCCEEEECCCH
T ss_pred hccCcEEEEECcCHHHHHHHHHHhh-cCCcEEEEEEcCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEEeCCh
Confidence 35689999999999985 4677776 479999999999999999999999854 689999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc-ChhHHHHHHhhcCCCCccceEEEEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH-NPRTAQMKEFVSDPQRFGQLRTMHSCF 162 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~-~p~~~~~k~~i~~~g~iG~i~~i~~~~ 162 (362)
..|++++++||++||||+||||++.+++++++|.++|+++|+.+++++++|| .|.++++|++| ++|.||+|..+++.+
T Consensus 99 ~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i-~~g~iG~i~~~~~~~ 177 (361)
T 3u3x_A 99 SERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELV-AAGAIGEVVHIVGLG 177 (361)
T ss_dssp HHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHH-HTTTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHH-HcCCCCCeEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999 59999999999 899999999999876
Q ss_pred eecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC--CCCeeEeeEEEEEeCCCcEEE
Q 018020 163 SFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN--EAGVILSCGASLHWDDGRVAT 240 (362)
Q Consensus 163 ~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~--~~~~~d~~~~~~~~~~G~~~~ 240 (362)
.+...+ +...+|+.++..+ ||.|.|+|+|.+|+++|++|...++.|++....... ..+.+|++.++++|+||+ ++
T Consensus 178 ~~~~~~-~~~~~w~~~~~~~-GG~l~d~g~H~iD~~~~l~G~~~~~~v~a~~~~~~~~~~~~~~d~~~~~l~~~~G~-~~ 254 (361)
T 3u3x_A 178 PHRLRR-ETRPDWFFRRADY-GGILTDIASHQCEQFLFFTGVNDATVLSASVGNQSVPDAPELQDTGSIHLSTGRTT-GM 254 (361)
T ss_dssp ECCCCG-GGSCGGGTCHHHH-CCHHHHHSHHHHHHHHHHHCCSCCEEEEEEEECCSCTTSTTSCCEEEEEEECSSCE-EE
T ss_pred ccccCC-CCCCCcccCcCcc-CchHHhhhhHHHHHHHHHhCCCCeEEEEEEeecccCCCCCCCCceEEEEEEECCce-EE
Confidence 554332 2345788877764 499999999999999999995434557887543332 347899999999999999 99
Q ss_pred EEEeeeeCCc------eeEEEEeccceEEEcceeccC-CCCcceEEecccccccccccccccCCcceeeecCCchhHHHH
Q 018020 241 FSCSFLANMT------MDITATGTNGSLQLHDFIIPF-REEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMV 313 (362)
Q Consensus 241 ~~~~~~~~~~------~~~~v~G~~G~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (362)
++++|..+.. .+++|+|++|++.+++..... .............. ... ... . ..+.
T Consensus 255 ~~~s~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~l~~~~~~g------------~~~-~~~--~--~~~~ 317 (361)
T 3u3x_A 255 IHVNWLTPEGMPTWGDGRLFIVGTSGTIEVRKTVDLAGREGGNHLFLADRNG------------VEH-IDC--S--RVDL 317 (361)
T ss_dssp EEEESCCCTTCSSSCCCEEEEEESSCEEEEECSCCTTSSSSSCEEEEECSSC------------EEE-EEC--T--TSCC
T ss_pred EEEEeecCCCCCCCCCceEEEEeCCeEEEEeccccccccCCCceEEEECCCC------------cee-cCc--c--ccCC
Confidence 9999988653 489999999999998542111 01111121111110 000 001 0 1123
Q ss_pred HHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhC
Q 018020 314 REFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 314 ~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
.++.+|+++|++|.+|..+ .++++++++|++|+++|+++.
T Consensus 318 ~~~~~F~~ai~~~~~~~~~-~~d~l~~l~i~~a~~~Sa~~~ 357 (361)
T 3u3x_A 318 PFGRQFLADIRDRTETAMP-QERCFKAMELALQAQAIAEQN 357 (361)
T ss_dssp THHHHHHHHHHHSCCSSSC-HHHHHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999988776554 788999999999999999987
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-53 Score=396.72 Aligned_cols=326 Identities=20% Similarity=0.238 Sum_probs=271.6
Q ss_pred eEEEEEeccHHHHHH-HHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~-~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||||||+|.||..+ ++.+.+ ++++++++||+++++++++++++|++ ..|+|++++++++++|+|+|+||+..|.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~g~~---~~~~~~~~~l~~~~~D~V~i~tp~~~h~ 76 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIG---KSVTSVEELVGDPDVDAVYVSTTNELHR 76 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHTTCS---CCBSCHHHHHTCTTCCEEEECSCGGGHH
T ss_pred CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEEeCChhHhH
Confidence 589999999999997 888888 89999999999999999999999874 5799999999988899999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecCC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD 167 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~ 167 (362)
+++..|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+..+.+
T Consensus 77 ~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i-~~g~iG~i~~v~~~~~~~~~ 155 (332)
T 2glx_A 77 EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAI-AEGRIGRPIAARVFHAVYLP 155 (332)
T ss_dssp HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHH-HTTTTSSEEEEEEEEECBCC
T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHH-HcCCCCCeEEEEEEEcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999998876543
Q ss_pred cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccc-cCCCCeeEeeEEEEEeCCCcEEEEEEeee
Q 018020 168 AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPV-LNEAGVILSCGASLHWDDGRVATFSCSFL 246 (362)
Q Consensus 168 ~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~-~~~~~~~d~~~~~~~~~~G~~~~~~~~~~ 246 (362)
+...+|+.++...|||.|.|+|+|.+|+++|++|. +|++|++..... ....+.+|++.++++|+||.++++++++.
T Consensus 156 --~~~~~w~~~~~~~ggG~l~d~g~H~id~~~~l~G~-~~~~V~a~~~~~~~~~~~~~d~~~~~l~~~~G~~~~~~~s~~ 232 (332)
T 2glx_A 156 --PHLQGWRLERPEAGGGVILDITVHDADTLRFVLND-DPAEAVAISHSAGMGKEGVEDGVMGVLRFQSGVIAQFHDAFT 232 (332)
T ss_dssp --GGGTTGGGSCTTTTCSHHHHTHHHHHHHHHHHHTS-CEEEEEEEEECCSSSCTTCCSEEEEEEEETTSCEEEEEEESB
T ss_pred --CCCCCcccccCCCCCchHhhhhHHHHHHHHHHcCC-CCcEEEEEEecCCCCCCCccceEEEEEEECCCcEEEEEEEee
Confidence 23457888755556799999999999999999995 599999985433 33457889999999999999999999988
Q ss_pred eC-CceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhhc
Q 018020 247 AN-MTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKN 325 (362)
Q Consensus 247 ~~-~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 325 (362)
.+ ...+++|+|++|++.+.+..... ............. . ....+..+.|..++.+|+++|++
T Consensus 233 ~~~~~~~~~i~G~~G~i~~~~~~~~~--~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~~~~~f~~~i~~ 295 (332)
T 2glx_A 233 TKFAETGFEVHGTEGSLIGRNVMTQK--PVGTVTLRNAEGE-------------S--QLPLDPANLYETALAAFHSAIEG 295 (332)
T ss_dssp CSSCCCEEEEEESSCEEEEESCSSSS--SCCEEEEEETTEE-------------E--ECCCCCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCceEEEEECceEEEeecccCCC--CCceEEEEcCCCc-------------e--EEecCCcchHHHHHHHHHHHHhc
Confidence 54 45689999999999765421110 0001111111000 0 01112223678899999999997
Q ss_pred CCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 326 GSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 326 g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
|.++.. +.+++++++++++|+++|+++| ++|+++
T Consensus 296 ~~~~~~-~~~~~~~~~~i~~a~~~S~~~g-~~v~~~ 329 (332)
T 2glx_A 296 HGQPSA-TGEDGVWSLATGLAVVKAAATG-QAAEIE 329 (332)
T ss_dssp SSCCSS-BHHHHHHHHHHHHHHHHHHHHS-SCEECC
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHhhcC-ceEecC
Confidence 776555 5788999999999999999999 999874
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-54 Score=403.98 Aligned_cols=325 Identities=18% Similarity=0.161 Sum_probs=269.6
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||||||+|.||..|++.+.+.|+++++++||+++++++++++++|. ..|+|++++++++++|+|+|+||+..|
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~----~~~~~~~~~l~~~~~D~V~i~tp~~~h 78 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGA----EAVASPDEVFARDDIDGIVIGSPTSTH 78 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTC----EEESSHHHHTTCSCCCEEEECSCGGGH
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCC----ceeCCHHHHhcCCCCCEEEEeCCchhh
Confidence 4799999999999999999999999999999999999999999999984 689999999998899999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
.+++..|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+..+.
T Consensus 79 ~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~i~~v~~~~~~~~ 157 (344)
T 3euw_A 79 VDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARV-ANQEIGNLEQLVIISRDPA 157 (344)
T ss_dssp HHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHH-HTTTTSSEEEEEEEEECSS
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHH-hcCCCCceEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999998876543
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC----CCCeeEeeEEEEEeCCCcEEEEE
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN----EAGVILSCGASLHWDDGRVATFS 242 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~----~~~~~d~~~~~~~~~~G~~~~~~ 242 (362)
++ +..|+ ..+||.|.|+|+|.+|+++|++| +|++|++....... +.+.+|.+.++++|+||++++++
T Consensus 158 ~~---~~~~~----~~~gG~l~d~g~H~ld~~~~l~G--~~~~v~a~~~~~~~~~~~~~~~~D~~~~~l~~~~G~~~~~~ 228 (344)
T 3euw_A 158 PA---PKDYI----AGSGGIFRDMTIHDLDMARFFVP--NIVEVTATGANVFSQEIAEFNDYDQVIVTLRGSKGELINIV 228 (344)
T ss_dssp CC---CHHHH----HHSCHHHHHTHHHHHHHHHHHCS--CEEEEEEEEECSSCHHHHHTTCCSEEEEEEEETTSCEEEEE
T ss_pred CC---Ccccc----cCCCceeecchhhHHHHHHHhcC--CcEEEEEEecccccccccccCCCceEEEEEEECCCcEEEEE
Confidence 22 12232 23569999999999999999999 79999999644322 23456889999999999999999
Q ss_pred EeeeeCC--ceeEEEEeccceEEEcceeccCCCCcceEEeccccccccccccccc-CCcceeeecCCchhHHHHHHHHHH
Q 018020 243 CSFLANM--TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVP-LPSEHVVTTDIPQEACMVREFSRL 319 (362)
Q Consensus 243 ~~~~~~~--~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 319 (362)
+++..+. ..+++|+|++|++.+++.. .....+.. .. ++.. ...... ......+.|..++.+|
T Consensus 229 ~s~~~~~~~~~~~~i~G~~G~i~~~~~~----~~~l~~~~--~~-------g~~~~~~~~~~--~~~~~~~~~~~~~~~f 293 (344)
T 3euw_A 229 NSRHCSYGYDQRLEAFGSKGMLAADNIR----PTTVRKHN--AE-------STEQADPIFNF--FLERYDAAYKAELATF 293 (344)
T ss_dssp EESCCTTSCEEEEEEEETTEEEEECCCC----SSCEEEES--SS-------CBSEECCCCCS--HHHHTHHHHHHHHHHH
T ss_pred EEeccCCCCceEEEEEECcEEEEEcCCC----CceEEEEc--CC-------CccccCCcccc--chhhhhHHHHHHHHHH
Confidence 9998765 4579999999999998521 11111111 11 0000 000000 0012346789999999
Q ss_pred HHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 320 VANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 320 ~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
+++|++|.++.. +.++++++++|++|+++|+++| ++|++.+
T Consensus 294 ~~~i~~~~~~~~-~~~d~~~~~~i~~a~~~Sa~~g-~~V~~~~ 334 (344)
T 3euw_A 294 AQGIRDGQGFSP-NFEDGVIALELANACLESAQTG-RTVTLNP 334 (344)
T ss_dssp HHHHHHCSCCSS-BHHHHHHHHHHHHHHHHHHHHT-BCEESSC
T ss_pred HHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHHhC-CeEECCC
Confidence 999998887655 4788999999999999999999 9999863
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=410.89 Aligned_cols=316 Identities=17% Similarity=0.178 Sum_probs=257.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-H---HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-E---KATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~---~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
++||||||+|.++..|++.+ .++++|++|||+++ + +..++++++++. +..|+|+++||+++++|+|+|+||+
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~~~vD~V~I~tp~ 77 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKAISEMNIK--PKKYNNWWEMLEKEKPDILVINTVF 77 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTTTCC--CEECSSHHHHHHHHCCSEEEECSSH
T ss_pred ceEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHcCCC--CcccCCHHHHhcCCCCCEEEEeCCc
Confidence 59999999999888999888 88999999999887 3 444455567863 3789999999998899999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE--EEEeeecccChhHHHHHHhhcCCCCccceEEEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ--LMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSC 161 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~--~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~ 161 (362)
..|++++++||++||||+||||++.|++++++|.++++++|+. +++++++||+|.++++|++| ++|.||+|..+++.
T Consensus 78 ~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~i~~~ 156 (337)
T 3ip3_A 78 SLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLV-SEGAVGEIRLVNTQ 156 (337)
T ss_dssp HHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHH-HHTTTSSEEEEEEE
T ss_pred chHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHH-hcCCccceEEEEEE
Confidence 9999999999999999999999999999999999999999998 99999999999999999999 89999999999998
Q ss_pred eeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC--CCCeeEeeEEEEEeCCCcEE
Q 018020 162 FSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN--EAGVILSCGASLHWDDGRVA 239 (362)
Q Consensus 162 ~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~--~~~~~d~~~~~~~~~~G~~~ 239 (362)
+...... ..+|+..+.. +||.+.|+|+|.+|+++|++|. +|++|++....... ..+.+|++.++++|+||+++
T Consensus 157 ~~~~~~~---~~~~~~~~~~-~gG~l~d~g~H~iD~~~~l~G~-~~~~V~a~~~~~~~~~~~~~~d~~~~~l~~~~G~~~ 231 (337)
T 3ip3_A 157 KSYKLGQ---RPDFYKKRET-YGGTIPWVGIHAIDWIHWITGK-KFLSVYATHSRLHNSGHGELETTALCHFTLENEVFA 231 (337)
T ss_dssp EEBCCCS---CCGGGGSHHH-HCCHHHHTTHHHHHHHHHHHCC-CEEEEEEEEECTTCTTCTTCCSEEEEEEEEGGGEEE
T ss_pred ecccCCC---Ccchhhcccc-cCCchhhcchHHHHHHHHhcCC-CceEEEEEecccccCCCCCcceEEEEEEEECCCcEE
Confidence 7654322 1245444443 4599999999999999999994 48999998644332 35688999999999999999
Q ss_pred EEEEeeeeC------CceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHH
Q 018020 240 TFSCSFLAN------MTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMV 313 (362)
Q Consensus 240 ~~~~~~~~~------~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (362)
+++++|..+ ...+++|+|++|++.+.+... ..... ... .. ... ..+.
T Consensus 232 ~~~~s~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~-------~~~~~--~~~------------~~---~~~---~~~~ 284 (337)
T 3ip3_A 232 SLSIDYLRPQGAPTHDDDRMRIVGTRGIVEVINERV-------FLTDE--KGH------------RE---VPL---VEKG 284 (337)
T ss_dssp EEEEESCCCTTSSSSBCCEEEEEESSCEEEEETTEE-------EEEET--TEE------------EE---ECC---CCCC
T ss_pred EEEEEEEcCCCCCCCCCcEEEEEecceEEEEeCCEE-------EEecC--CCc------------ee---ccC---CchH
Confidence 999998765 245799999999999864211 11110 000 00 001 1124
Q ss_pred HHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeecC
Q 018020 314 REFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIKW 362 (362)
Q Consensus 314 ~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~~ 362 (362)
.++.+|+++|++|+++.. +.+++++++++++|+++|+++| ++|.+.|
T Consensus 285 ~~~~~f~~~i~~~~~~~~-~~~d~~~~~~i~~a~~~Sa~~g-~~V~~~~ 331 (337)
T 3ip3_A 285 QIFEDFLREIRGQGKCMV-TPEDSILTTEIALKARLSADTG-QIVLIEG 331 (337)
T ss_dssp CHHHHHHHHHTTSSCCSS-CHHHHHHHHHHHHHHHHHHHHT-SCEEC--
T ss_pred HHHHHHHHHhcCCCCCCC-CHHHHHHHHHHHHHHHHHHHhC-CeEEeec
Confidence 578999999998776655 4788999999999999999999 9999875
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-54 Score=398.10 Aligned_cols=323 Identities=21% Similarity=0.236 Sum_probs=267.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
++||||||+|.||..|++.+.+.++++++++||+++++++++++++|+ . |+|++++++++++|+|+|+||+..|.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~----~-~~~~~~~l~~~~~D~V~i~tp~~~h~ 77 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGC----E-VRTIDAIEAAADIDAVVICTPTDTHA 77 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTC----E-ECCHHHHHHCTTCCEEEECSCGGGHH
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCC----C-cCCHHHHhcCCCCCEEEEeCCchhHH
Confidence 699999999999999999999999999999999999999999999986 4 99999999988999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecCC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD 167 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~ 167 (362)
+++..|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+..+.+
T Consensus 78 ~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i-~~g~iG~i~~~~~~~~~~~~ 156 (331)
T 4hkt_A 78 DLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAI-DDGRIGEVEMVTITSRDPSA 156 (331)
T ss_dssp HHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHH-HTTTTCSEEEEEEEEECSSC
T ss_pred HHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHH-HcCCCCceEEEEEEecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 89999999999987654332
Q ss_pred cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC----CCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 168 AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN----EAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 168 ~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~----~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
+. ..|. . .+||.|.|+|+|.+|+++|++|. +|++|++....... +.+.+|++.++++|+||+++++++
T Consensus 157 ~~---~~~~---~-~~gG~l~d~g~H~ld~~~~l~G~-~~~~v~a~~~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~~~~ 228 (331)
T 4hkt_A 157 PP---VDYI---K-RSGGIFRDMTIHDFDMARFLLGE-EPVSVTATAAVLIDKAIGDAGDYDSVSVILQTASGKQAIISN 228 (331)
T ss_dssp CC---HHHH---H-TTTCHHHHTHHHHHHHHHHHHCS-CEEEEEEEEECCSCHHHHHTTCCSEEEEEEEETTCCEEEEEE
T ss_pred Cc---hhhh---h-cCCCeeehheehHHHHHHHHhCC-CccEEEEEeccccccccccCCCcceEEEEEEECCCCEEEEEE
Confidence 11 1122 1 35699999999999999999994 69999998643322 235678899999999999999999
Q ss_pred eeeeCC--ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHH
Q 018020 244 SFLANM--TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVA 321 (362)
Q Consensus 244 ~~~~~~--~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (362)
++..+. ..+++|+|++|++.+++.. .....+..... . ........ ......+.|..++.+|++
T Consensus 229 s~~~~~~~~~~~~i~G~~G~i~~~~~~----~~~~~~~~~~~--~-------~~~~~~~~--~~~~~~~~~~~~~~~f~~ 293 (331)
T 4hkt_A 229 SRRATYGYDQRIEVHGSKGAVAAENQR----PVSIEIATGDG--Y-------TRPPLHDF--FMTRYTEAYANEIESFIA 293 (331)
T ss_dssp ESCCTTCCEEEEEEEESSCEEEECCCC----SCCEEEEETTE--E-------EECCCCSS--HHHHTHHHHHHHHHHHHH
T ss_pred ecccCCCCccEEEEEeCceEEEeccCC----CccEEEEcCCC--c-------ccCCCCcc--chhhhhHHHHHHHHHHHH
Confidence 988765 4579999999999997532 11111111100 0 00000000 001234678999999999
Q ss_pred hhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 322 NIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 322 ~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
+|++|.++.. +.+++++++++++|+++|+++| ++|+|.
T Consensus 294 ~i~~~~~~~~-~~~d~~~~~~i~~a~~~S~~~g-~~V~la 331 (331)
T 4hkt_A 294 AIEKGAEIAP-SGNDGLAALALADAAVRSVAEK-RQISIA 331 (331)
T ss_dssp HHHTTCCCSS-CHHHHHHHHHHHHHHHHHHHHT-BCEECC
T ss_pred HHhCCCCCCC-CHHHHHHHHHHHHHHHHHHhcC-CeEecC
Confidence 9998877655 4788999999999999999999 999974
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-55 Score=408.92 Aligned_cols=327 Identities=14% Similarity=0.161 Sum_probs=265.2
Q ss_pred CceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||||||+|.||.. |++.+.+.|++++++|||++++++++++++++.. .+|+|++++|+++++|+|+|+||+.
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~vD~V~i~tp~~ 79 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDI---PVLDNVPAMLNQVPLDAVVMAGPPQ 79 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSC---CEESSHHHHHHHSCCSEEEECSCHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCC---cccCCHHHHhcCCCCCEEEEcCCcH
Confidence 35899999999999985 8999999999999999999999999999998643 6899999999988999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|.+++++|+++||||+||||++.+++++++|.++++++|+++++++++||.|.++++|++| ++|.||+|..+++.+..
T Consensus 80 ~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~~~~~~~~ 158 (359)
T 3m2t_A 80 LHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMT-QVDEFGETLHIQLNHYA 158 (359)
T ss_dssp HHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHH-TSGGGCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHH-HCCCCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999 89999999999988765
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEe
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~ 244 (362)
..+. ...|+.++. +||.+.|+++|.+|+++|++|. +|++|++.... .+.+|.+.++++|+||++++++++
T Consensus 159 ~~~~---~~~w~~~~~--~gg~l~d~~~H~iD~~~~l~G~-~~~~V~a~~~~----~~~~d~~~~~l~~~~G~~~~~~~s 228 (359)
T 3m2t_A 159 NKPR---APLWGLDST--LRSFLLAQAIHTIDLAITFGDG-ELRRVQSSVQR----HDDALIVRADMAFSSGATASLLAG 228 (359)
T ss_dssp CCCS---SCCTTCSCH--HHHHHHHTHHHHHHHHHHHHCS-CEEEEEEEEEE----ETTEEEEEEEEEETTSCEEEEEEE
T ss_pred CCCC---CCCcccCCC--ccchhhhcccHHHHHHHHHhCC-CceEEEEEeec----cCCCeEEEEEEEECCCCEEEEEEe
Confidence 4322 345776655 4589999999999999999984 69999998532 234788999999999999999999
Q ss_pred eeeCC-ceeEEEEeccceEE-EcceeccCCCCcceEEeccc-----ccccccccccccCCcceeeecCCchhHHHHHHHH
Q 018020 245 FLANM-TMDITATGTNGSLQ-LHDFIIPFREEEASYFTNTR-----CFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFS 317 (362)
Q Consensus 245 ~~~~~-~~~~~v~G~~G~i~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
|..+. ..+++|+|++|.+. .++... ........ .........|...+.. . ......|..+++
T Consensus 229 ~~~~~~~~~~~i~g~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~ei~ 297 (359)
T 3m2t_A 229 TSFPYFEFDMKLVSSSSTLVELDNLWN------ITLHEPEHATRPTGAAKRWRGAWQPGPLD----S-GYERSGYHGELH 297 (359)
T ss_dssp SCSSSCEEEEEEEETTSCEEEEETTTE------EEEECTTCCBTTTBSCTTCCEEECCCTTC----C-BSTTTSHHHHHH
T ss_pred cccCCCceeEEEEeCCceEEEecCceE------EEecCCCcceeeccCCCccccccCCCccc----c-CcCchhHHHHHH
Confidence 98775 56799999999754 332210 00110000 0000000011111000 0 012346889999
Q ss_pred HHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCccee
Q 018020 318 RLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIE 359 (362)
Q Consensus 318 ~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~ 359 (362)
+|+++|++|+++..+ .++++.++++++|+++|+++| ++|.
T Consensus 298 ~F~~ai~~g~~~~~~-~~d~l~~~~l~eai~~Sa~~~-~~~~ 337 (359)
T 3m2t_A 298 QFFQAIREHRRFEAD-FASLLPTYRVIEEICSADAVA-QGLQ 337 (359)
T ss_dssp HHHHHHHTTCCCTTS-TGGGHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhhhcC-CCCC
Confidence 999999988776555 777999999999999999998 8775
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=406.91 Aligned_cols=352 Identities=14% Similarity=0.096 Sum_probs=271.9
Q ss_pred CCceeEEEEEec----cHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 5 SQAAIRFGIIGA----ADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 5 ~~~~~~v~iiG~----G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+|+++||||||+ |.+|..|++.+.+. ++++|++|||+++++++++++++|++ .+.+|+|++++|+++++|+|+|
T Consensus 36 ~m~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~-~~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 36 SSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK-HATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp GGCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT-TCEEESCHHHHHHCTTCSEEEE
T ss_pred CCCcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC-cceeeCCHHHHhcCCCCCEEEE
Confidence 467899999999 89999999999998 89999999999999999999999974 3468999999999889999999
Q ss_pred cCCCcccHHHHHHHHHcC------CeEEEeCCCCCCHHHHHHHHHHHHHcC-CEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 80 PLPTSMHVKWAISVAQKK------KHLLMEKPMALNVAEFDVILNACEENG-VQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~g------k~V~~EKP~~~~~~~~~~l~~~a~~~~-~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
+||+..|++++++||++| |||+||||++.+++++++|.++|+++| +.+++++++||+|.++++|++| ++|.|
T Consensus 115 ~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i-~~G~i 193 (479)
T 2nvw_A 115 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELI-SEGCI 193 (479)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHH-HTTTT
T ss_pred cCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEEeccccCHHHHHHHHHH-HcCCC
Confidence 999999999999999999 999999999999999999999999999 9999999999999999999999 89999
Q ss_pred cceEEEEEEeeecC--Ccc-cccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC----------
Q 018020 153 GQLRTMHSCFSFAG--DAE-FLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN---------- 219 (362)
Q Consensus 153 G~i~~i~~~~~~~~--~~~-~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~---------- 219 (362)
|+|..+++.+..+. +.. +...+|+.++.. |||.|.|+|+|.+|+++|++|. +|++|++.......
T Consensus 194 G~i~~v~~~~~~~~~~~~~~~~~~~w~~~~~~-gGG~l~d~g~H~lDl~~~l~G~-~p~~V~a~~~~~~~~~~~~~~~g~ 271 (479)
T 2nvw_A 194 GDINSIEISGNGGWYGYERPMRSPEYLYDIES-GVNLISNSFGHTIDVLQYITGS-YFQKINAMISNNIPTQFLLDENGK 271 (479)
T ss_dssp CSEEEEEEEEECSBSSSEEETTCCGGGGCGGG-SCSTTTTHHHHHHHHHHHHHTC-CEEEEEEEEECCCSEEEEEC--CC
T ss_pred CCeEEEEEEecCCccCCcccccccccccCccc-CccHHHHHHHHHHHHHHHHHCC-CCCEEEEEEEeccCcccccccccc
Confidence 99999999875432 111 224568887775 5699999999999999999995 59999998643221
Q ss_pred ------CCCeeEeeEEEEEeCCC-cEEEEEEeeee-----CCceeEEEEeccceEEEcceeccCCCCcceE--Eeccccc
Q 018020 220 ------EAGVILSCGASLHWDDG-RVATFSCSFLA-----NMTMDITATGTNGSLQLHDFIIPFREEEASY--FTNTRCF 285 (362)
Q Consensus 220 ------~~~~~d~~~~~~~~~~G-~~~~~~~~~~~-----~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~--~~~~~~~ 285 (362)
+.+.+|.+.++++|+|| +++++++++.. ....+++|+|++|++.+++...........+ .......
T Consensus 272 ~~g~~~~~~~~D~~~~~l~f~~G~~~~~~~~s~~~~~~~~~~~~~~~I~Gt~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (479)
T 2nvw_A 272 RTKETISKTCPDHLLFQGILENGKVPVSCSFKGGTPVKKLTKNLVIDIHGTKGDLKIEGDAGFVEISNLVLYFYGIKNGN 351 (479)
T ss_dssp CCSCEEECCSCCEEEEEEEESGGGCEEEEEEECBSSCCSSSCSEEEEEEESSCEEEEEEC------CCEEEEEEEESCC-
T ss_pred cccccccCCcCeEEEEEEEECCCCEEEEEEEEeccCCCcCCCceEEEEEeCCeEEEEecCCcccccCccEEEEeccCCcc
Confidence 12578999999999999 99999988765 3455899999999999985421011111112 1100000
Q ss_pred ccc------ccccc---ccC-----Cc--ce-------eeecC-C-chhHHHHHHHHHHHHhhhcCC-CC----------
Q 018020 286 FND------LVTGW---VPL-----PS--EH-------VVTTD-I-PQEACMVREFSRLVANIKNGS-KP---------- 329 (362)
Q Consensus 286 ~~~------~~~~~---~~~-----~~--~~-------~~~~~-~-~~~~~~~~~~~~~~~~i~~g~-~~---------- 329 (362)
... ...+| ... +. .. ..... . .....+..++.+|+++|++|. ++
T Consensus 352 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~f~~~i~~g~~~~~~~~~~~~~~ 431 (479)
T 2nvw_A 352 GSSNGTDNNGAAAIKDKEKVTKSPSPSTGTSEEEQTMEVFHLRNYNSVVGNILRIYESIADYHFLGKPESKSSRGPDDLF 431 (479)
T ss_dssp --------------------------------CCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHC---------------
T ss_pred cccccccccccccccccccccccCCCchhhhccccccCCccccccchHHHHHHHHHHHHHHHHhcCCCcccccccccccc
Confidence 000 00011 000 00 00 00000 0 112468899999999999877 51
Q ss_pred -------------CCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 330 -------------EQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 330 -------------~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
...+.+|++++++|++|+++|+++| ++|+|.
T Consensus 432 ~~~~~~~~~~~~~~~~~~~da~~~~~i~~a~~~S~~~g-~~v~v~ 475 (479)
T 2nvw_A 432 ASTKFDKQGFRFEGFPTFKDAIILHRLIDAVFRSDKEE-KTLDVS 475 (479)
T ss_dssp ---CCCCCTTCSSSCCCHHHHHHHHHHHHHHHHHHHHT-BCEECT
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHHHHHHhcC-Ceeech
Confidence 3345788999999999999999998 999985
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-52 Score=402.77 Aligned_cols=349 Identities=14% Similarity=0.083 Sum_probs=271.0
Q ss_pred CceeEEEEEec----cHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 6 QAAIRFGIIGA----ADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 6 ~~~~~v~iiG~----G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|+++||||||+ |.+|..|++.++++ |+++|++|||+++++++++++++|++ .+.+|+|++++|+++++|+|+|+
T Consensus 18 m~~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~ll~~~~vD~V~i~ 96 (438)
T 3btv_A 18 AAPIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS-NATAFPTLESFASSSTIDMIVIA 96 (438)
T ss_dssp -CCEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCT-TCEEESSHHHHHHCSSCSEEEEC
T ss_pred cCCCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC-cceeeCCHHHHhcCCCCCEEEEe
Confidence 36799999999 89999999999999 89999999999999999999999974 34689999999998899999999
Q ss_pred CCCcccHHHHHHHHHcC------CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 81 LPTSMHVKWAISVAQKK------KHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g------k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
||+..|.+++++||++| |||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+
T Consensus 97 tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~G~iG~ 175 (438)
T 3btv_A 97 IQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELI-SQGYIGD 175 (438)
T ss_dssp SCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHH-HTTTTCS
T ss_pred CCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHH-HcCCCCC
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999 8999999
Q ss_pred eEEEEEEeeecC--Ccc-cccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC------------
Q 018020 155 LRTMHSCFSFAG--DAE-FLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN------------ 219 (362)
Q Consensus 155 i~~i~~~~~~~~--~~~-~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~------------ 219 (362)
|..+++.+..+. +.. +...+|+.++.. |||.|.|+|+|.+|+++|++|. +|++|++.......
T Consensus 176 i~~v~~~~~~~~~~~~~~~~~~~w~~~~~~-gGG~l~d~g~H~lDl~~~l~G~-~~~~V~a~~~~~~~~~~~~d~~~~~~ 253 (438)
T 3btv_A 176 INSIEIAGNGGWYGYERPVKSPKYIYEIGN-GVDLVTTTFGHTIDILQYMTSS-YFSRINAMVFNNIPEQELIDERGNRL 253 (438)
T ss_dssp EEEEEEEEECSSSSSEEETTSCGGGGSTTS-SCSTTTTHHHHHHHHHHHHHTC-CEEEEEEEEECCCSEEEEECTTSCEE
T ss_pred cEEEEEEEccCcccccccCCcccccccccc-CCCeeeeeeeeHHHHHHHHhCC-CceEEEEEeeccCCcccccccccccc
Confidence 999999875432 111 223568887775 5699999999999999999995 58999998643221
Q ss_pred ----CCCeeEeeEEEEEeCCC-cEEEEEEeeee-----CCceeEEEEeccceEEEcceeccCCCCcceEEeccccc----
Q 018020 220 ----EAGVILSCGASLHWDDG-RVATFSCSFLA-----NMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCF---- 285 (362)
Q Consensus 220 ----~~~~~d~~~~~~~~~~G-~~~~~~~~~~~-----~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~---- 285 (362)
..+.+|.+.++++|+|| +++++++++.. ....+++|+|++|++.+++...........+.......
T Consensus 254 g~~~~~~~~D~~~~~l~~~~G~~~~~~~~s~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 333 (438)
T 3btv_A 254 GQRVPKTVPDHLLFQGTLLNGNVPVSCSFKGGKPTKKFTKNLVIDIHGTKRDLKLEGDAGFAEISNLVLYYSGTRANDFP 333 (438)
T ss_dssp EEEEECCSCSEEEEEEEETTTTEEEEEEEESSCCC---CCSEEEEEEESSCEEEEECC-----CCEEEEEEEC-------
T ss_pred ccccCCCCCceEEEEEEECCCcEEEEEEEEccCCCCCCCCCeEEEEEecCcEEEEecCccccccCceEEEeccCcccccc
Confidence 12467899999999999 99999988765 34558999999999999754100011111111010000
Q ss_pred c---cccc--cccccCCcc-eeee--cCCchhHHHHHHHHHHHHhhhcCCC-----------------CCCCchHhHHHH
Q 018020 286 F---NDLV--TGWVPLPSE-HVVT--TDIPQEACMVREFSRLVANIKNGSK-----------------PEQKWPIISRKT 340 (362)
Q Consensus 286 ~---~~~~--~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~i~~g~~-----------------~~~~~~e~~l~~ 340 (362)
+ .... ..|...... .... ........+..++.+|++ |++|.+ +.+ +.++++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-i~~g~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~ 411 (438)
T 3btv_A 334 LANGQQAPLDPGYDAGKEIMEVYHLRNYNAIVGNIHRLYQSISD-FHFNTKKIPELPSQFVMQGFDFEGFP-TLMDALIL 411 (438)
T ss_dssp ---------------CCEEEEEECCSSCCHHHHHHHHHHHHHHH-HHTTTTCCTTCCSCCSCCTTCSSSCC-CHHHHHHH
T ss_pred ccccceeecCcccccccccCCCcccccCChHHHHHHHHHHHHHH-HhCCCCccccccccccccccccCCCC-CHHHHHHH
Confidence 0 0000 001000000 0000 001123467889999999 998776 444 57889999
Q ss_pred HHHHHHHHHHHhhCCcceeec
Q 018020 341 QLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 341 ~~i~~a~~~S~~~g~~~V~l~ 361 (362)
++|++|+++|+++| ++|+|.
T Consensus 412 ~~i~~a~~~Sa~~g-~~V~~~ 431 (438)
T 3btv_A 412 HRLIESVYKSNMMG-STLNVS 431 (438)
T ss_dssp HHHHHHHHHHHHHT-BCEECT
T ss_pred HHHHHHHHHHHhcC-CeEEec
Confidence 99999999999998 999874
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-52 Score=391.16 Aligned_cols=324 Identities=15% Similarity=0.134 Sum_probs=255.9
Q ss_pred CceeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||||||+|+++. .+++.++ .++++|++|||++++++++++++++.. ..|+|++++|+++++|+|+|+||+.
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~-~~~~~lvav~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~~D~V~i~tp~~ 77 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLI-DAGAELAGVFESDSDNRAKFTSLFPSV---PFAASAEQLITDASIDLIACAVIPC 77 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHH-HTTCEEEEEECSCTTSCHHHHHHSTTC---CBCSCHHHHHTCTTCCEEEECSCGG
T ss_pred CCccEEEEECCChHHHHHhhhhhc-CCCcEEEEEeCCCHHHHHHHHHhcCCC---cccCCHHHHhhCCCCCEEEEeCChh
Confidence 3589999999999986 5788876 468999999999999999999999543 6899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChh-HHHHHHhhcCCCCccceEEEEEEee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPR-TAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~-~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
.|.+++++||++||||+||||++.+++++++|.++++++|+.+++++++||+|. ++++|++| ++|.||+|..+++.+.
T Consensus 78 ~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i-~~g~iG~i~~v~~~~~ 156 (336)
T 2p2s_A 78 DRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELV-QRGEIGRVIQTMGVGP 156 (336)
T ss_dssp GHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHH-HTTTTSSEEEEEEEEE
T ss_pred hHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHH-hCCCCCceEEEEEEcc
Confidence 999999999999999999999999999999999999999999999999999998 99999999 8999999999998765
Q ss_pred ecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeecccc--CCCCeeEeeEEEEEeCCCcEEEE
Q 018020 164 FAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVL--NEAGVILSCGASLHWDDGRVATF 241 (362)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~--~~~~~~d~~~~~~~~~~G~~~~~ 241 (362)
+...+ ...+|+.++..+ ||.|.|+|+|.+|+++|++|..+|++|++...... ...+.+|.+.++++|+||+++++
T Consensus 157 ~~~~~--~~~~w~~~~~~~-gG~l~d~g~H~id~~~~l~G~~~~~~v~a~~~~~~~~~~~~~~d~~~~~l~~~~G~~~~~ 233 (336)
T 2p2s_A 157 HRERG--ARPDWFYQKRQY-GGILCDIGIHQIEQFLYFTGNTNARVVTSQTANYHHPHHPEFEDFGDAMLLGDNGATGYF 233 (336)
T ss_dssp CBCCS--CCCGGGGCHHHH-CCHHHHTHHHHHHHHHHHHTCSCEEEEEEEEECSSCTTSTTCCSEEEEEEEETTSCEEEE
T ss_pred ccCCC--CCCCceeccccc-CCeeehhhhhHHHHHHHHhCCCCceEEEEeEEeecCCCCCCccchheEEEEECCCcEEEE
Confidence 43322 234688777764 59999999999999999999433688888754322 22467899999999999999999
Q ss_pred EEeeeeCC------ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHH
Q 018020 242 SCSFLANM------TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVRE 315 (362)
Q Consensus 242 ~~~~~~~~------~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
+++|..+. ..+++|+|++|++.+++.................. .... ...+.... ...
T Consensus 234 ~~s~~~~~~~~~~~~~~~~i~G~~G~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~~-~~~ 297 (336)
T 2p2s_A 234 RCDWFTPDGLSVWGDGRLTILGTEGYIEIRKYVDLTRGESNVVYLVNGK-------------GEQR--FTPAGSVE-RAF 297 (336)
T ss_dssp EEESBCCTTSSSSCCCEEEEEESSCEEEEECSCBTTTTBCSEEEEESSS-------------CEEE--ECCTTSSC-CCH
T ss_pred EEEecCCCCccccCCceEEEEecceEEEEecccccccCCCceEEeecCC-------------Ccce--eccCCCcc-HHH
Confidence 99987764 34799999999999974321100000111110000 0000 00110000 123
Q ss_pred HHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhC
Q 018020 316 FSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 316 ~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
+.+|+++++++.++.. +.+++++++++++|+++|++++
T Consensus 298 ~~~f~~~i~~~~~~~~-~~~d~l~~~~i~~a~~~Sa~~~ 335 (336)
T 2p2s_A 298 FPDFLRDCRERTENAM-SQSHIFKATELSILAQQAANKI 335 (336)
T ss_dssp HHHHHHHHHHCCCCSS-CHHHHHHHHHHHHHHHHHCEEC
T ss_pred HHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHhhhhc
Confidence 5689999997776654 4788999999999999999875
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-53 Score=397.43 Aligned_cols=325 Identities=15% Similarity=0.122 Sum_probs=255.3
Q ss_pred eeEEEEEeccHHHHH-HHH-HHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARK-LSR-AITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~-~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||||||+|.||.. |++ .+...++++|++|||+++++++.. +++. ++.+|+|++++|+++++|+|+|+||+..
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~-~~~~---~~~~~~~~~~ll~~~~~D~V~i~tp~~~ 77 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQA-PIYS---HIHFTSDLDEVLNDPDVKLVVVCTHADS 77 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGS-GGGT---TCEEESCTHHHHTCTTEEEEEECSCGGG
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHH-HhcC---CCceECCHHHHhcCCCCCEEEEcCChHH
Confidence 699999999999985 898 668889999999999998877443 3442 2368999999999999999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeec
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFA 165 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~ 165 (362)
|.+++++|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++++.+.
T Consensus 78 h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i-~~g~iG~i~~~~~~~~~~ 156 (345)
T 3f4l_A 78 HFEYAKRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAI-ESGKLGEIVEVESHFDYY 156 (345)
T ss_dssp HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHH-HHSTTCSEEEEEEECCCB
T ss_pred HHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHH-hcCCCCCeEEEEEEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999999 899999999999987654
Q ss_pred CCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEee
Q 018020 166 GDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSF 245 (362)
Q Consensus 166 ~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~ 245 (362)
.+ .|+..+...+||.|+|+|+|.+|+++|++| +|++|++.......+.+.+|++.++++|+||. +.+..++
T Consensus 157 ~~------~~~~~~~~~~gG~l~d~g~H~id~~~~l~G--~~~~v~a~~~~~~~~~~~~d~~~~~l~~~~~~-~~~~~s~ 227 (345)
T 3f4l_A 157 RP------VAETKPGLPQDGAFYGLGVHTMDQIISLFG--RPDHVAYDIRSLRNKANPDDTFEAQLFYGDLK-AIVKTSH 227 (345)
T ss_dssp CC------CCCCCCCCGGGSHHHHTHHHHHHHHHHHHC--SCSEEEEEEECCSCTTSSCCEEEEEEEETTEE-EEEEECS
T ss_pred CC------ccccCCCCCCCchhheehHHHHHHHHHHhC--CCeEEEEEEEEecCCCCcceEEEEEEEECCEE-EEEEEEe
Confidence 33 222333444679999999999999999999 69999998765555667899999999999875 5677666
Q ss_pred eeC-CceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccC------------CcceeeecCCchhHHH
Q 018020 246 LAN-MTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPL------------PSEHVVTTDIPQEACM 312 (362)
Q Consensus 246 ~~~-~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 312 (362)
..+ ...+++|+|++|++.+.+...... .... .......+|... ...... ......+.|
T Consensus 228 ~~~~~~~~~~i~G~~G~~~~~~~d~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 298 (345)
T 3f4l_A 228 LVKIDYPKFIVHGKKGSFIKYGIDQQET----SLKA----NIMPGEPGFAADDSVGVLEYVNDEGVTVRE-EMKPEMGDY 298 (345)
T ss_dssp BCSSCCCSEEEEESSEEEEECSCCSHHH----HHHT----TCCTTSTTTTCCCCCEEEEEECTTSCEEEE-EECCCCCCT
T ss_pred cccCCCCEEEEEecceEEEEeCCChhHH----HHhc----CCCCCCCCCCcCCCcceEEEecCCCcccce-ecCCCCCCH
Confidence 554 355899999999999865321000 0000 000000011110 000000 011113357
Q ss_pred HHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcc
Q 018020 313 VREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEP 357 (362)
Q Consensus 313 ~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~ 357 (362)
..++++|+++|++|.++.. +.+|++++++|++|+++|+++| ++
T Consensus 299 ~~~~~~f~~ai~~g~~~~~-~~~da~~~~~iiea~~~Sa~~g-~~ 341 (345)
T 3f4l_A 299 GRVYDALYQTITHGAPNYV-KESEVLTNLEILERGFEQASPS-TV 341 (345)
T ss_dssp THHHHHHHHHHHHCCCCSS-CHHHHHHHHHHHHHTTSSSSSE-EE
T ss_pred HHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHhhhcC-cc
Confidence 8899999999998887765 4788999999999999999999 44
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-52 Score=388.58 Aligned_cols=334 Identities=19% Similarity=0.251 Sum_probs=267.7
Q ss_pred CCccCCceeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 1 MATESQAAIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|++ +++++||||||+|.||..|++.+. +.++++++++||+++++++.+++++|++ .+|+|++++++++++|+|+|
T Consensus 2 m~~-~~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~---~~~~~~~~~l~~~~~D~V~i 77 (346)
T 3cea_A 2 MVT-TRKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVE---TTYTNYKDMIDTENIDAIFI 77 (346)
T ss_dssp ----CCCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCS---EEESCHHHHHTTSCCSEEEE
T ss_pred CCC-CCCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCC---cccCCHHHHhcCCCCCEEEE
Confidence 543 456899999999999999999998 7889999999999999999999999874 67999999999888999999
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCEEEEeeecccChhHHHHHHhhcCCCCccceEEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN-GVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTM 158 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~-~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i 158 (362)
+||+..|.+++..|+++||||+||||++.+.+++++|.++++++ |+.+++++++||+|.++++|++| ++|.||+|..+
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i-~~g~iG~i~~v 156 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIV-DNGDIGKIIYM 156 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHH-HTTTTCSEEEE
T ss_pred eCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHH-HcCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999 89999999999
Q ss_pred EEEeeecCCcccccCccCcCCCC--CCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC----CCCeeEeeEEEEE
Q 018020 159 HSCFSFAGDAEFLKNDIRVKPDL--DGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN----EAGVILSCGASLH 232 (362)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~--~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~----~~~~~d~~~~~~~ 232 (362)
++.+..+.++ ..|+.+... .+||.|.|+|+|.+|+++|++|. +|++|++....... +.+..|++.++++
T Consensus 157 ~~~~~~~~~~----~~~~~~~~~~~~~gG~l~d~g~H~lD~~~~l~G~-~~~~V~a~~~~~~~~~~~~~~~~D~~~~~l~ 231 (346)
T 3cea_A 157 RGYGIDPISG----MESFTKFATEADSGGIFVDMNIHDIDLIRWFTGQ-DPVQAYGLTSNIAAPQLADIGEFETGVAQLK 231 (346)
T ss_dssp EEEEEEEGGG----HHHHHHHHHHSCCCCHHHHTTHHHHHHHHHHHSC-CEEEEEEEEECSSCGGGGGGTCCSEEEEEEE
T ss_pred EEEecCCCCC----ChhHhhhcccCCCCchHHHhhccHHHHHHHHcCC-CCeEEEEEEeeccCccccccCCceeEEEEEE
Confidence 9876543221 123322211 15699999999999999999994 48999998643211 1233578899999
Q ss_pred eCCCcEEEEEEeeeeCC--ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhH
Q 018020 233 WDDGRVATFSCSFLANM--TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEA 310 (362)
Q Consensus 233 ~~~G~~~~~~~~~~~~~--~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (362)
|+||.++++++++..+. ..+++|+|++|++.+++... .....+....+ ... ..+. . ......+
T Consensus 232 ~~~G~~~~~~~s~~~~~~~~~~~~i~G~~G~i~~~~~~~---~~~~~~~~~~~-~~~-------~~~~-~---~~~~~~~ 296 (346)
T 3cea_A 232 MSDGVIATLIGGRHAAHGNQVELEVMGSNGWVRIGEHPD---LNRVTVFNDQG-VVR-------PSLQ-S---FGERFDT 296 (346)
T ss_dssp ETTSCEEEEEEEEEESSSCEEEEEEEESSCEEEECSSCB---CSSEEEEETTE-EEE-------CBCC-C---HHHHSHH
T ss_pred ECCCcEEEEEEEEecCCCCceEEEEEECCCEEEEcCCCC---CccEEEEeCCC-ccc-------CCCc-c---hhhHhhH
Confidence 99999999999998764 45799999999999975320 11111111100 000 0000 0 0011245
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcceeec
Q 018020 311 CMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIEIK 361 (362)
Q Consensus 311 ~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~l~ 361 (362)
.|..++.+|+++|++|.++.. +.+++++++++++|+++|+++| ++|+|+
T Consensus 297 ~~~~~~~~f~~~i~~~~~~~~-~~~~~~~~~~i~~a~~~S~~~g-~~v~~~ 345 (346)
T 3cea_A 297 AFTDEVQDFVNNVIVGKQPEV-TVDDGIKALKIAKACQQSANIG-KLVDIQ 345 (346)
T ss_dssp HHHHHHHHHHHHHHHTCCCSS-CHHHHHHHHHHHHHHHHHHHHT-SCEECC
T ss_pred HHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHHcC-CeEecC
Confidence 788999999999998877655 5788999999999999999999 999875
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=398.52 Aligned_cols=342 Identities=19% Similarity=0.201 Sum_probs=261.4
Q ss_pred eeEEEEEecc-HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAA-DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G-~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||||||+| .+|..|++.+.+.+++++++|||+++++++++++++|++ .|+|++++|+++++|+|+|+||+..|
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~----~~~~~~ell~~~~vD~V~i~tp~~~H 77 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIP----VFATLAEMMQHVQMDAVYIASPHQFH 77 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCC----EESSHHHHHHHSCCSEEEECSCGGGH
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCC----eECCHHHHHcCCCCCEEEEcCCcHHH
Confidence 6999999999 889999999999999999999999999999999999874 79999999999899999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
++++++||++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+....
T Consensus 78 ~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~~~~~~~~~~ 156 (387)
T 3moi_A 78 CEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIV-QEGSVGRVSMLNCFNYTDF 156 (387)
T ss_dssp HHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHH-HHCTTCCEEEEEEEEECCG
T ss_pred HHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHH-hcCCCCCeEEEEEEecccc
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999998653211
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEeee
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFL 246 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~ 246 (362)
... ....|..+.. .|||+|+|+|+|.+|+++||+|. +|++|++...........+|.+.++++|+||++++++++|.
T Consensus 157 ~~~-~~~~~~~~~~-~ggG~l~d~g~H~id~~~~l~g~-~~~~V~a~~~~~~~~~~~~d~~~~~l~f~~G~~~~~~~s~~ 233 (387)
T 3moi_A 157 LYR-PRRPEELDTS-KGGGIIYNQLPHQIDSIKTITGQ-RITAVRAMTGRLDPKRPTEGNCAAMLTLEDGACAVMVYSGY 233 (387)
T ss_dssp GGS-CCCGGGGCGG-GTCSHHHHTHHHHHHHHHHHHCC-CEEEEEEEEECCCTTSCSCCEEEEEEEETTSCEEEEEEECS
T ss_pred ccC-CCChhhcccc-cCCcchhhhHHHHHHHHHHHhCC-CceEEEEEEeecCCCCCcceEEEEEEEECCCCEEEEEEecc
Confidence 100 0011222233 35699999999999999999984 59999999755555567889999999999999999999987
Q ss_pred eCCce--eEEEEeccceEEEcceecc------C--------------CC-------------CcceEEecc----ccccc
Q 018020 247 ANMTM--DITATGTNGSLQLHDFIIP------F--------------RE-------------EEASYFTNT----RCFFN 287 (362)
Q Consensus 247 ~~~~~--~~~v~G~~G~i~~~~~~~~------~--------------~~-------------~~~~~~~~~----~~~~~ 287 (362)
.+... ...+.|++|.+........ . .. ....|.... .....
T Consensus 234 ~~~~~~~~~~~~g~~g~~~~p~~g~~~~~~~~~g~d~qe~~l~~~~~~g~~~~~d~~~~~~~~~~~fG~~~~~~~~~~~~ 313 (387)
T 3moi_A 234 DHFDSDEMHFWLAEGGRAKQPNHGGARKVLRQLEGDEAELRRSRYGFGGPISKSMESGNTDRKQPHFGVMLVTCEHADLR 313 (387)
T ss_dssp SSSCGGGGTTTBCTTSSBCCCCSSHHHHHHHHCCSCHHHHHHHHHSTTSTTCCC------CCCCCCCSEEEEEESSEEEE
T ss_pred cCCCCCeEEEEEEcCCeecCccccccccceeccCCcchhhhccccccCCccccccccccccccccccCccccchhccCCC
Confidence 76543 4566777777665320000 0 00 000000000 00000
Q ss_pred cccccc--ccCCcceeeecC-CchhHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhCCccee
Q 018020 288 DLVTGW--VPLPSEHVVTTD-IPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERGFEPIE 359 (362)
Q Consensus 288 ~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~V~ 359 (362)
....+. ............ ......|..++.+|+++|++|.++.. +.++++++++|++|+++|+++| ++|+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~g~~~~~-~~e~a~~~l~v~eA~~~Sa~~g-~~V~ 386 (387)
T 3moi_A 314 ASPEGVLVYGDEGVREVPAITGRGPFSQGDTIDELRDAIAGVAPALR-DARWGKDTLEVCLAVLESSATG-RQVE 386 (387)
T ss_dssp ECSSEEEEEETTEEEEEECCCCSSSTHHHHHHHHHHHHHTTSSCCSS-CHHHHHHHHHHHHHHHHHHHHS-SCEE
T ss_pred CCCCceEEecCCCceeeccCCCCCCcchHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHHhhhcC-CcCc
Confidence 000000 000001111011 11222378999999999997776555 5888999999999999999999 9885
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-49 Score=364.80 Aligned_cols=304 Identities=15% Similarity=0.165 Sum_probs=243.9
Q ss_pred CCceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 5 SQAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+|+++||||||+|.||.. |++.+.+++++++++|||+++++++++++++|++ .|+|++++++ ++|+|+|+||+
T Consensus 3 ~M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~----~~~~~~~ll~--~~D~V~i~tp~ 76 (308)
T 3uuw_A 3 AMKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIM----PFDSIESLAK--KCDCIFLHSST 76 (308)
T ss_dssp --CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCC----BCSCHHHHHT--TCSEEEECCCG
T ss_pred ccccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC----CcCCHHHHHh--cCCEEEEeCCc
Confidence 356899999999999996 8999999999999999999999999999999975 4999999999 69999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
..|.+++..|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.++++|++| |++..+++.+.
T Consensus 77 ~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i------g~~~~~~~~~~ 150 (308)
T 3uuw_A 77 ETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIKNNA------TEIVSINICKH 150 (308)
T ss_dssp GGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHC------CSEEEEEEEEE
T ss_pred HhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCHHHHHHHHHc------CCCcEEEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999987 44555555443
Q ss_pred ecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEE
Q 018020 164 FAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSC 243 (362)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~ 243 (362)
... .+..|+ ++|.|.|+|+|.+|+++|++| .|.+|.+.... ....+.+|++.++++|+|| ++++..
T Consensus 151 r~~----~~~~~~------~~g~l~d~g~H~id~~~~l~G--~~~~v~~~~~~-~~~~~~~d~~~~~l~~~~g-~~~~~~ 216 (308)
T 3uuw_A 151 GLN----SLRNVR------FDSTLIDDYIHVIDTALWLAN--EDVEISGEDLF-LTDNKNLIFVSHKLKGKNF-SINTSM 216 (308)
T ss_dssp CSS----CCCSSC------HHHHHHHTHHHHHHHHHHHHC--SCCEEEEEEEE-ECTTSCEEEEEEEEECSSC-EEEEEE
T ss_pred cCC----CCCccc------cCceeeecchHHHHHHHHHcC--CCceEEEeeee-ecCCCceeEEEEEEEeCCE-EEEEEE
Confidence 221 122343 347999999999999999999 58888877432 2455688999999999987 588888
Q ss_pred eeeeCCc-eeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHh
Q 018020 244 SFLANMT-MDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVAN 322 (362)
Q Consensus 244 ~~~~~~~-~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (362)
++..+.. .+++|+|++|++.+++... ..+...... .......|. .......|..++++|+++
T Consensus 217 s~~~~~~~~~~~i~G~~G~i~~~~~~~------~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~~e~~~F~~~ 279 (308)
T 3uuw_A 217 HRDSGTKLEQVEILSKGKIQRVKNLNV------LEIEEGGNL-TLKQSGAWV----------NILKQKGFEDISNHFIDC 279 (308)
T ss_dssp ETTCSSCEEEEEEEETTEEEEEETTTE------EEEEETTEE-EEEECCTTC----------CHHHHHTHHHHHHHHHHH
T ss_pred EcCCCCCeEEEEEEECCcEEEEecCce------EEEEcCCcc-eecccCCcc----------chhhccchHHHHHHHHHH
Confidence 8877653 4899999999999985321 111111100 000000010 012345689999999999
Q ss_pred hhcCCCCCCCchHhHHHHHHHHHHHHHHHh
Q 018020 323 IKNGSKPEQKWPIISRKTQLIIDAVKTSIE 352 (362)
Q Consensus 323 i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~ 352 (362)
|++|.+|..+ .++++++++|++++++|++
T Consensus 280 i~~g~~~~~~-~~d~~~~~~i~~ai~~S~k 308 (308)
T 3uuw_A 280 IENNIKPAIN-GEECIKAQRLLEKIINSVK 308 (308)
T ss_dssp HHTTCCCSSC-GGGGTHHHHHHHHHHHTCC
T ss_pred HhCCCCCCcC-HHHHHHHHHHHHHHHHhcC
Confidence 9988766554 7779999999999999974
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-50 Score=391.57 Aligned_cols=348 Identities=15% Similarity=0.096 Sum_probs=260.8
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH---HcCCCCCCcccC----CHHHHhcCCCCcEE
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK---ANNFPPDAKVYG----SYEALLDDKDIDAV 77 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~---~~~~~~~~~~~~----~~~e~l~~~~~D~V 77 (362)
+|+++||||||+|.||..|++.+.++|+++|++|||+++++++++++ ++|++ .+.+|+ |++++|+++++|+|
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~-~~~~~~~~~~~~~~ll~~~~vD~V 95 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKK-PAKVFGNGNDDYKNMLKDKNIDAV 95 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCC-CCEEECSSTTTHHHHTTCTTCCEE
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCC-CCceeccCCCCHHHHhcCCCCCEE
Confidence 46789999999999999999999999999999999999999998887 45763 346788 99999999899999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
+|+||+..|.+++++||++||||+||||++.+++++++|.++|+++|+.+++++++||.|.++++|++| ++|.||+|..
T Consensus 96 ~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i-~~G~iG~i~~ 174 (444)
T 2ixa_A 96 FVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENVCYRRDVMAILNMV-RKGMFGELVH 174 (444)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHH-HTTTTCSEEE
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHH-HcCCCCCeEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEEeeecCCc-----c---------------cccCccCcCCCCC---------CCc-ccccccchHHHHHHHHccC-CC
Q 018020 158 MHSCFSFAGDA-----E---------------FLKNDIRVKPDLD---------GLG-ALGDAGWYGIRSILWANDY-EL 206 (362)
Q Consensus 158 i~~~~~~~~~~-----~---------------~~~~~w~~~~~~~---------ggg-~l~~~g~h~id~~~~l~g~-~~ 206 (362)
+++.+.+..+. . |...+|+.++... ++| ++.|+++|.+|+++|++|. ..
T Consensus 175 v~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~g~~~~~~ggG~vl~d~giH~~D~~~~l~g~~~~ 254 (444)
T 2ixa_A 175 GTGGYQHDLRPVLFNSGINGKNGDGVEFGEKAFSEAKWRTNHYKNRNGELYPTHGVGPLHTMMDINRGNRLLRLSSFASK 254 (444)
T ss_dssp EEECCBCCCHHHHCBCSCTTCCSSCCBCSTTSCGGGGTHHHHHHHCCSCCCCHHHHHHHHHHHTBTTTBCEEEEEEEECC
T ss_pred EEEEEeccchhhhcccccccccccccccccccccCCCcccchhhccCCCcccccccCHHHHhhcccccchhheeeccccc
Confidence 99987643211 1 1234677654331 224 5999999999999999983 12
Q ss_pred CcEEEEeeccc----cC----CCCeeEeeEEEEEeCCCcEEEEEEeeeeCC--ceeEEEEeccceEEEcceeccCCCCcc
Q 018020 207 PKTVIAMHGPV----LN----EAGVILSCGASLHWDDGRVATFSCSFLANM--TMDITATGTNGSLQLHDFIIPFREEEA 276 (362)
Q Consensus 207 ~~~V~a~~~~~----~~----~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~--~~~~~v~G~~G~i~~~~~~~~~~~~~~ 276 (362)
+.+|.+..... .. +.+.+|.+.++++|+||++++++.++..+. ..+++|+||+|++.+...... ...
T Consensus 255 ~~~v~a~~~~~~~~~~~~~~~~~~~~D~~~~~l~~~~G~~~~~~~s~~~~~~~~~~~~v~Gt~G~i~~~~~~~~---~~~ 331 (444)
T 2ixa_A 255 ARGLHKYIVDKGGESHPNAKVEWKQGDIVTTQIQCHNGETIVLTHDTSLQRPYNLGFKVQGTEGLWEDFGWGEA---AQG 331 (444)
T ss_dssp CCHHHHHHHHHHCTTSGGGGCCCCSCSCEEEEEEETTSCEEEEEEBCSSCCCCCCCCEEEESSCEEEECSSSCT---TSE
T ss_pred ccchhhhHHHhcCCCCcccccccccCceeEEEEEECCCCEEEEEEEeccCCCCCceEEEEEeeeEEEecccccC---CCc
Confidence 34444432111 01 234678999999999999999999998764 357999999999998643100 000
Q ss_pred eEEecccccccccccccccCCcce-eee-----------cCCchhHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHHHH
Q 018020 277 SYFTNTRCFFNDLVTGWVPLPSEH-VVT-----------TDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQLII 344 (362)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~i~ 344 (362)
.+....... ....|...+... .+. ............+.+|+++|++|.++..+ .++++++++|+
T Consensus 332 ~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~gh~g~~~~~~~~fi~~i~~g~~~~~~-~~da~~~~~i~ 407 (444)
T 2ixa_A 332 FIYFEKIMN---HSHRWDSSEKWIKEYDHPMWKKHEQKAVGAGHGGMDYFLDNTFVECIKRNEAFPLD-VYDLATWYSIT 407 (444)
T ss_dssp EEECTTTTT---TCCSCEESHHHHHHTCCHHHHHHHHHHSTTSCCTHHHHHHHHHHHHHHHTCCCSSC-HHHHHHHHHHH
T ss_pred eEEecCCCC---CccccccchhhHHhcCChhhhhhhhhcccCCCCCccHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHH
Confidence 011111100 000110000000 000 00000011122467899999988766655 77799999999
Q ss_pred HHHHHHHhhCCcceeec
Q 018020 345 DAVKTSIERGFEPIEIK 361 (362)
Q Consensus 345 ~a~~~S~~~g~~~V~l~ 361 (362)
+|+++|+++||++|+|+
T Consensus 408 ~aa~~Sa~~gg~~V~ip 424 (444)
T 2ixa_A 408 PLSEKSIAENGAVQEIP 424 (444)
T ss_dssp HHHHHHHHTTTCCEECC
T ss_pred HHHHHHHHcCCceeecc
Confidence 99999999998999983
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-50 Score=369.21 Aligned_cols=289 Identities=14% Similarity=0.110 Sum_probs=241.0
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---------cCCCCcEE
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---------DDKDIDAV 77 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---------~~~~~D~V 77 (362)
++||||||+ |++|..|++.+++. +++++++||++++++ .+++.++ ++.+|+|+++++ +++++|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~-~~~~~~~---~~~~~~~~~~ll~~~~~l~~~~~~~vD~V 77 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT-GNCLVSAYDINDSVG-IIDSISP---QSEFFTEFEFFLDHASNLKRDSATALDYV 77 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG-GGGGTCT---TCEEESSHHHHHHHHHHHTTSTTTSCCEE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC-CCEEEEEEcCCHHHH-HHHhhCC---CCcEECCHHHHHHhhhhhhhccCCCCcEE
Confidence 699999999 78999999999987 799999999998763 4555553 347899999999 47899999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
+|+||+..|++++++||++||||+||||++.|++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..
T Consensus 78 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~g~iG~i~~ 156 (318)
T 3oa2_A 78 SICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKV-AREKSPHKYE 156 (318)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHH-HHS-CSSCEE
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHH-hcCCCCceEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred EEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCc
Q 018020 158 MHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGR 237 (362)
Q Consensus 158 i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~ 237 (362)
+++.+....+.. ...+|+.++..+| |.+.|+|+|.+|+++|++| .|.+|.+.. ..+|.+.++++|+||.
T Consensus 157 v~~~~~~~~~~~-~~~~w~~~~~~~g-G~l~d~g~H~id~~~~l~G--~~~~v~~~~-------~~~d~~~~~l~~~~g~ 225 (318)
T 3oa2_A 157 VDLTYITSRGNW-YLKSWKGDPRKSF-GVATNIGVHFYDMLHFIFG--KLQRNVVHF-------TSEYKTAGYLEYEQAR 225 (318)
T ss_dssp EEEEEEECCCHH-HHHSGGGCHHHHC-CHHHHHHHHHHHHHHHHHC--SEEEEEEEE-------ECSSEEEEEEEETTEE
T ss_pred EEEEEEecCCCC-CCcccccCCCcCC-CccccCCcHHHHHHHHHhC--CCceEEEEe-------cCCcEEEEEEEeCCCe
Confidence 999988655433 3457888888755 9999999999999999999 688888873 2567889999999998
Q ss_pred EEEEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHH
Q 018020 238 VATFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFS 317 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
++.+ +++......+ +|+|++|++...... .+ + ....+.|..++.
T Consensus 226 ~~~~-~s~~~~~~~~-~i~G~~G~~~~~~~d----~q-------------------------e-----~~~~~g~~~~~~ 269 (318)
T 3oa2_A 226 VRWF-LSVDANDLPE-SVKGKKPTYRSITVN----GE-------------------------E-----MEFSEGFTDLHT 269 (318)
T ss_dssp EEEE-EECCGGGSCT-TTTTTCSEEEEEEET----TE-------------------------E-----CCC-----CHHH
T ss_pred EEEE-EEecCCCCCe-EEEecCcEEEEEeEC----cc-------------------------H-----HHHhcCCchhhH
Confidence 7766 4454444445 999999999976321 00 0 111235677889
Q ss_pred HHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHh
Q 018020 318 RLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIE 352 (362)
Q Consensus 318 ~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~ 352 (362)
+|+++|++|+++ .++|++.+++|+++++.+..
T Consensus 270 ~~~~~i~~g~~~---~~~da~~~~~i~~~i~~~~~ 301 (318)
T 3oa2_A 270 TSYEEILAGRGY---GIDDARHCVETVNTIRSAVI 301 (318)
T ss_dssp HHHHHHHTTCCC---CHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHHHHhcCCc
Confidence 999999988655 58889999999999998766
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=353.89 Aligned_cols=311 Identities=16% Similarity=0.209 Sum_probs=245.9
Q ss_pred CCccC-CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 1 MATES-QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 1 m~~~~-~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|+..+ ++++||||||+|.||..|++.+.+.++++++++||++++++++++++ + ..|+|++++++++++|+|+|
T Consensus 2 m~~p~~~~~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--~----~~~~~~~~~l~~~~~D~V~i 75 (315)
T 3c1a_A 2 MSIPANNSPVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--C----VIESDWRSVVSAPEVEAVII 75 (315)
T ss_dssp -------CCEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--C----EEESSTHHHHTCTTCCEEEE
T ss_pred CCCCCCCCcceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--C----cccCCHHHHhhCCCCCEEEE
Confidence 54333 35699999999999999999999999999999999999988766554 2 57999999999888999999
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMH 159 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~ 159 (362)
+||+..|.+++.+|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| + .||+|..++
T Consensus 76 ~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i-~--~lG~i~~v~ 152 (315)
T 3c1a_A 76 ATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADL-T--SIGPILAVR 152 (315)
T ss_dssp ESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTH-H--HHCSEEEEE
T ss_pred eCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHH-H--HcCCeEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 5 899999999
Q ss_pred EEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccC-CCCeeEeeEEEEEeCCCcE
Q 018020 160 SCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLN-EAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~-~~~~~d~~~~~~~~~~G~~ 238 (362)
+.+.. ...| ...|||.+.|+|+|.+|+++|++|. +|++|++....... ..+.+|++.++++| ||.+
T Consensus 153 ~~~~~-------~~~~----~~~ggG~l~d~g~H~id~~~~l~G~-~~~~v~a~~~~~~~~~~~~~d~~~~~l~~-~g~~ 219 (315)
T 3c1a_A 153 SEAGN-------HGPY----RPGGVPMLWDWGAHDVSMVLDLMGR-DPDSTSASWAARGEKDGGEAGDVTLTLAF-STVE 219 (315)
T ss_dssp EEEEE-------ECCC----CTTCCCHHHHHHHHHHHHHHHHHSS-CCSEEEEEEEEEEEETTEEEEEEEEEEEE-TTEE
T ss_pred EEEec-------CCCc----cccCCcchhhhhchHHHHHHHHhCC-CCcEEEEEeEeecCCCCCCCceEEEEEEE-CCEE
Confidence 87611 1224 2335699999999999999999994 49999998643332 15688999999999 9999
Q ss_pred EEEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHH
Q 018020 239 ATFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSR 318 (362)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
++++++.......+++|+|++|++.+++... ....+.. ... ...|... . .........+.|..++.+
T Consensus 220 ~~~~~s~~~~~~~~~~i~G~~G~i~~~~~~~----~~~~~~~--~~~----~~~~~~~-~--~~~~~~~~~~~~~~~~~~ 286 (315)
T 3c1a_A 220 AHIRLCNTMDKCRRLAVFGEAGTLVMDDRAT----DKLTLHP--PQP----DGNWPVG-Q--GHALTVTDEMPLTRAVRL 286 (315)
T ss_dssp EEEEEESEEEEEEEEEEEESSCEEEEETTSS----SSSEEEC--CCS----SCCCCCS-C--CEECCCCCCCHHHHHHHH
T ss_pred EEEEEecCCCCCceEEEEecccEEEEccCCC----ceEEEEc--CCc----ccccCCC-c--ccccCCCccchHHHHHHH
Confidence 9999982223345799999999999975321 0111111 100 1112110 0 011222334578899999
Q ss_pred HHHhhhcCCCCCCCchHhHHHHHHHHHHH
Q 018020 319 LVANIKNGSKPEQKWPIISRKTQLIIDAV 347 (362)
Q Consensus 319 ~~~~i~~g~~~~~~~~e~~l~~~~i~~a~ 347 (362)
|+++|++|.+|.. +.+++++++++++|+
T Consensus 287 f~~~i~~~~~~~~-~~~~~~~~~~i~~a~ 314 (315)
T 3c1a_A 287 FAGAVRQPEPGPS-PLELGLRVVRVLGAC 314 (315)
T ss_dssp HHHHTTSCCCCSS-BHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCC-CHHHHHHHHHHHHhh
Confidence 9999998877655 478899999999987
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=352.98 Aligned_cols=307 Identities=17% Similarity=0.160 Sum_probs=243.2
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||||||+|.||.. |++.+.+.++++++ +||+++++++++++++|++ ..+.+..++| ++++|+|+|+||+..|
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~-v~d~~~~~~~~~a~~~g~~---~~~~~~~~~l-~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVS---ATCTDYRDVL-QYGVDAVMIHAATDVH 76 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCC---CCCSSTTGGG-GGCCSEEEECSCGGGH
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHHHHcCCC---ccccCHHHHh-hcCCCEEEEECCchhH
Confidence 589999999999984 99999988899999 9999999999999999975 3356666777 5689999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~ 166 (362)
.+++.+|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|..+++.+....
T Consensus 77 ~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i-~~g~iG~i~~v~~~~~~~~ 155 (323)
T 1xea_A 77 STLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSEL-AQQECGALRSLRWEKHRHA 155 (323)
T ss_dssp HHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHH-HHTSCTTCSEEEEEEECBS
T ss_pred HHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHH-hcCCcCCceEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999 8899999999988764332
Q ss_pred CcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCc-EEEEEEee
Q 018020 167 DAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGR-VATFSCSF 245 (362)
Q Consensus 167 ~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~-~~~~~~~~ 245 (362)
.+ . .++|.|.|+|+|.+|+++|++|. +|++|++..... .++...++++|++|. .+++..++
T Consensus 156 ~p----~--------~~~g~l~d~g~H~id~~~~l~G~-~~~~V~a~~~~~-----~~d~~~~~~~~~~g~~~~~~~~~~ 217 (323)
T 1xea_A 156 LP----G--------DIRTFVFDDFIHPLDSVNLSRQC-NLDDLHLTYHMS-----EGLLARLDVQWQTGDTLLHASMNR 217 (323)
T ss_dssp CC----B--------CHHHHHHTTTHHHHHHHCTTCCC-SCTTEEEEEEEE-----TTEEEEEEEEEEETTEEEEEEEET
T ss_pred Cc----c--------cchhhhhhcceeHHHHHHHHhCC-CceEEEEEEeec-----CCceEEEEEEEcCCCEEEEEEEEe
Confidence 21 1 12478999999999999999994 378999985322 234566777777674 67777766
Q ss_pred eeCC-ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhh
Q 018020 246 LANM-TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIK 324 (362)
Q Consensus 246 ~~~~-~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 324 (362)
..+. ..+++|+|++|++.+++.... ..+........ ....|.. ......|..++.+|+++|+
T Consensus 218 ~~~~~~~~~~i~G~~G~i~~~~~~~~-----~~~~~~~~~~~--~~~~~~~----------~~~~~~~~~~~~~f~~~i~ 280 (323)
T 1xea_A 218 QFGITTEHVTASYDNVAYLFDSFTQG-----KMWRDNQESRV--ALKDWTP----------MLASKGFDAMVQDWLQVAA 280 (323)
T ss_dssp TBSSCEEEEEEEETTEEEEESSSSEE-----EEEETTEEEEE--ECCTTCC----------HHHHTTHHHHHHHHHHHHH
T ss_pred cCCCceEEEEEEECCcEEEEecCccc-----ceEeeccCCcc--ccCCcCc----------hhhhccHHHHHHHHHHHHH
Confidence 5443 457999999999999753211 01111100000 0001110 1133568899999999999
Q ss_pred cCCCCCCCchHhHHHHHHHHHHHHHHHhhCCcc
Q 018020 325 NGSKPEQKWPIISRKTQLIIDAVKTSIERGFEP 357 (362)
Q Consensus 325 ~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g~~~ 357 (362)
+|.+|.. +.+++++++++++|+++|+++| .+
T Consensus 281 ~g~~~~~-~~~d~l~~~~i~~a~~~s~~~g-~~ 311 (323)
T 1xea_A 281 AGKLPTH-IIERNLASHQLAEAICQQITQQ-VT 311 (323)
T ss_dssp HTCCCHH-HHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred cCCCCCC-CHHHHHHHHHHHHHHHHHhhhc-cc
Confidence 8876644 4788999999999999999987 54
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-46 Score=347.61 Aligned_cols=302 Identities=16% Similarity=0.182 Sum_probs=233.1
Q ss_pred CceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||||||+|.||.. +++.+.+.++++++++||+++++++.+++++|++ +++|++++ ++++|+|+|+||+.
T Consensus 3 m~~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~----~~~~~~~l--~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 3 LKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP----YADSLSSL--AASCDAVFVHSSTA 76 (319)
T ss_dssp --CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC----BCSSHHHH--HTTCSEEEECSCTT
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC----ccCcHHHh--hcCCCEEEEeCCch
Confidence 35799999999999996 9999998899999999999999999999999874 78999887 45799999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSF 164 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~ 164 (362)
.|.+++..|+++||||+||||++.+.+++++|.++++++|+.+++++++||+|.++++|++| |++..++.....
T Consensus 77 ~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~k~~i------~~~~~i~~~~~~ 150 (319)
T 1tlt_A 77 SHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQL------ATAASLRMDKHR 150 (319)
T ss_dssp HHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCHHHHHHTTTG------GGCCEEEEEECC
T ss_pred hHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHh------CCCcEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999998 445555543321
Q ss_pred cCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEEEEEe
Q 018020 165 AGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCS 244 (362)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~ 244 (362)
.. .|. +. .++|.|.|+|+|.+|+++|++| .|++|++..... . +.++...++++|++|. +++.++
T Consensus 151 ~~-------~~~--p~-~~~g~l~d~g~H~id~~~~l~G--~~~~V~a~~~~~-~--~~~d~~~~~~~~~~g~-~~~~~~ 214 (319)
T 1tlt_A 151 SN-------SVG--PH-DLYFTLLDDYLHVVDTALWLSG--GKASLDGGTLLT-N--DAGEMLFAEHHFSAGP-LQITTC 214 (319)
T ss_dssp SS-------CCC--SS-CHHHHHHHTHHHHHHHHHHHTT--TCCCEEEEEEEE-C--TTCCEEEEEEEEEETT-EEEEEE
T ss_pred CC-------ccC--CC-CCCceeecccccHHHHHHHHcC--CCeEEEEEEEec-C--CCCcEEEEEEEEcCCC-EEEEEE
Confidence 11 111 11 1347899999999999999999 568999885322 1 2345667778888876 555555
Q ss_pred eeeC---CceeEEEEeccceEEEcceeccCCCCcceEEeccccccc-ccccccccCCcceeeecCCchhHHHHHHHHHHH
Q 018020 245 FLAN---MTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFN-DLVTGWVPLPSEHVVTTDIPQEACMVREFSRLV 320 (362)
Q Consensus 245 ~~~~---~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (362)
+... ...+++|+|++|++.+++... +......... .....|. .......|..++.+|+
T Consensus 215 ~~~~~~~~~~~~~i~G~~G~i~~~~~~~--------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~F~ 276 (319)
T 1tlt_A 215 MHRRAGSQRETVQAVTDGALIDITDMRE--------WREERGQGVVHKPIPGWQ----------STLEQRGFVGCARHFI 276 (319)
T ss_dssp EESSSSCCCEEEEEEETTEEEEEETTTE--------EEEESSSCEEECCCCTTC----------CHHHHTTHHHHHHHHH
T ss_pred EeccCCCCcEEEEEEECCCEEEEecCce--------EEEecCCceecccCCCCc----------cccccccHHHHHHHHH
Confidence 5443 245799999999999975321 1111100000 0000110 0112356889999999
Q ss_pred HhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhC
Q 018020 321 ANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 321 ~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
++|++|.+|..+ .++++++++|++|+++|+++|
T Consensus 277 ~~i~~g~~~~~~-~~~~~~~~~i~~a~~~Sa~~g 309 (319)
T 1tlt_A 277 ECVQNQTVPQTA-GEQAVLAQRIVDKIWRDAMSE 309 (319)
T ss_dssp HHHHHTCCCTTS-GGGGSHHHHHHHHHHHHHTC-
T ss_pred HHHhcCCCCCCC-HHHHHHHHHHHHHHHHHhhcC
Confidence 999988876654 777999999999999999998
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-47 Score=350.30 Aligned_cols=281 Identities=20% Similarity=0.186 Sum_probs=229.3
Q ss_pred ccCCceeEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEc
Q 018020 3 TESQAAIRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLP 80 (362)
Q Consensus 3 ~~~~~~~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~ 80 (362)
.++|+++||||||+|.+|. .|++.+++.|+++|++|||++++ ++|+ ..|+|++++|++ +++|+|+|+
T Consensus 20 ~~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-------~~g~----~~~~~~~~ll~~~~~vD~V~i~ 88 (330)
T 4ew6_A 20 FQSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-------VEGV----NSYTTIEAMLDAEPSIDAVSLC 88 (330)
T ss_dssp CCCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-------CTTS----EEESSHHHHHHHCTTCCEEEEC
T ss_pred cccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-------hcCC----CccCCHHHHHhCCCCCCEEEEe
Confidence 4567889999999999998 79999999999999999999864 2454 589999999998 899999999
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEE
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHS 160 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~ 160 (362)
||+..|++++++||++||||+||||++.+++++++|.++|+++|+.+++++++||+|.++++|++| ++|.||+|.....
T Consensus 89 tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i-~~g~iG~v~~~~~ 167 (330)
T 4ew6_A 89 MPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFL-ASTTIKSVHVIWK 167 (330)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHH-HSSCEEEEEEEEE
T ss_pred CCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHH-hcCCceEEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 8899998765432
Q ss_pred EeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEE
Q 018020 161 CFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240 (362)
Q Consensus 161 ~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~ 240 (362)
..... ......|+.++ |||.++|+|+|.+|+++|++| .|.+|.+.........+.++.+.+.+++++|+.++
T Consensus 168 ~~~~~---~~~~~~w~~~~---ggG~l~d~g~H~ld~~~~l~g--~~~~v~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~ 239 (330)
T 4ew6_A 168 EDVRH---WHPNQDWIWQA---GGLGVFDPGINALSIVTHILP--RPVFITGAVLEFPENRDAPIAADIHFRDADGLPVH 239 (330)
T ss_dssp CBHHH---HSTTCSGGGST---TSCTTHHHHHHHHHHHHHHSS--SCCEEEEEEEEEEESCSSCSEEEEEEECTTCCEEE
T ss_pred cCccc---cCCCCCceEcC---CCcEEEEchhHHHHHHHHHcC--CCeEEEEEEEecCCCCcccEEEEEEEEcCCceEEE
Confidence 21111 01123466543 568999999999999999999 68999887544444556778889999999999999
Q ss_pred EEEeeeeCC--ceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHH
Q 018020 241 FSCSFLANM--TMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSR 318 (362)
Q Consensus 241 ~~~~~~~~~--~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (362)
++.+|..+. .++++|+|++|++.+++.. ..+..... ....+..+.|..++++
T Consensus 240 ~~~~~~~~~~~~~~~~i~Gt~G~i~~~~~~-------~~l~~~g~-------------------~~~~~~~~~y~~~~~~ 293 (330)
T 4ew6_A 240 AEFDWRQTGKQSWDIVAETAAGQMVLSEGG-------AKLSIDGR-------------------LTFAEPEQEYPSLYRR 293 (330)
T ss_dssp EEEESBCCSSCEEEEEEEESSCCEEEETTT-------TEEEETTC-------------------CC--CCCCHHHHHHHH
T ss_pred EEEEeccCCCCceEEEEEeCCEEEEEECCc-------cEEEECCE-------------------EEecCCCcchHHHHHH
Confidence 999987754 4689999999999998421 11111100 0123334578999999
Q ss_pred HHHhhhcCCCC
Q 018020 319 LVANIKNGSKP 329 (362)
Q Consensus 319 ~~~~i~~g~~~ 329 (362)
|+++|++|.++
T Consensus 294 F~~~v~~g~~~ 304 (330)
T 4ew6_A 294 FAEIIKAGKSD 304 (330)
T ss_dssp HHHHHHHTCCB
T ss_pred HHHHHHcCCCC
Confidence 99999988754
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-48 Score=354.88 Aligned_cols=291 Identities=14% Similarity=0.081 Sum_probs=238.7
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh--------cCCCCcEE
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL--------DDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l--------~~~~~D~V 77 (362)
+++||||||+ |++|..|++.+++. +++++++||++++++ .+++.++ ++.+|+|+++++ +++++|+|
T Consensus 2 ~mirvgiIG~gG~i~~~h~~~l~~~-~~~lvav~d~~~~~~-~~~~~~~---~~~~~~~~~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 2 HMTRFALTGLAGYIAPRHLKAIKEV-GGVLVASLDPATNVG-LVDSFFP---EAEFFTEPEAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp -CCEEEEECTTSSSHHHHHHHHHHT-TCEEEEEECSSCCCG-GGGGTCT---TCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred CceEEEEECCChHHHHHHHHHHHhC-CCEEEEEEcCCHHHH-HHHhhCC---CCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence 3699999999 68999999999987 799999999998864 4555553 347899999999 78899999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
+|+||+..|++++++||++||||+||||++.|++++++|.++|+++|+++++++++||+|.++++|++| ++| |+|..
T Consensus 77 ~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i-~~g--G~i~~ 153 (312)
T 3o9z_A 77 SIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLRVHPSLLALKERL-GQE--KGAKD 153 (312)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHH-HTC--CSCEE
T ss_pred EECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHHHHHH-HcC--CCEEE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 778 99999
Q ss_pred EEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCc
Q 018020 158 MHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGR 237 (362)
Q Consensus 158 i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~ 237 (362)
+++.+....+.. ...+|+.++..+| |.+.|+|+|.+|+++|++| .|++|++.. ..+|.+.++++|+||.
T Consensus 154 v~~~~~~~~~~~-~~~~w~~~~~~~g-G~l~d~g~H~id~~~~l~G--~~~~v~~~~-------~~~d~~~~~l~~~~g~ 222 (312)
T 3o9z_A 154 VVLTYVTGRGKW-YGKSWKVDEAKSG-GLATNIGIHFFDLLAWLFG--RALHVEVHA-------RTPTVNAGYLELEGAR 222 (312)
T ss_dssp EEEEEEECCCTT-GGGSGGGCHHHHC-CHHHHTTHHHHHHHHHHHC--CEEEEEEEE-------ECSSEEEEEEEETTEE
T ss_pred EEEEEEccCCCc-cccccccCcccCC-CeeeecccCHHHHHHHHhC--CCeEEEEEe-------cCCceEEEEEEECCCc
Confidence 999988654432 3457888887755 9999999999999999999 689998873 3567889999999998
Q ss_pred EEEEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHH
Q 018020 238 VATFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFS 317 (362)
Q Consensus 238 ~~~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (362)
+..+ .+.......+++|+|++|++...... .+. ..+ ...|.+...
T Consensus 223 v~~~-~s~~~~~~~~~~v~G~~G~~~~~~~d----~qe--~~l----------------------------~~g~~~~h~ 267 (312)
T 3o9z_A 223 VRWF-LSIDPSFVPEPLRRQGKRTYRSIAVD----GEE--VEF----------------------------SEGFTDLHT 267 (312)
T ss_dssp EEEE-EESCGGGSCHHHHTTTCCEEEEEEET----TEE--EEC----------------------------CTTTTSCHH
T ss_pred EEEE-EEecCCCCCeEEEEecCcEEEEEeec----ccH--HHH----------------------------hcCChhhhH
Confidence 7555 55544455678999999999976431 000 000 011223344
Q ss_pred HHHHhhhcCCCCCCCchHhHHHHHHHHHHHHHHHhhC
Q 018020 318 RLVANIKNGSKPEQKWPIISRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 318 ~~~~~i~~g~~~~~~~~e~~l~~~~i~~a~~~S~~~g 354 (362)
.++..|..|+.. ..|++..+++++++|++|...+
T Consensus 268 ~~~~~i~~g~~~---g~~~~~~~~~~~~~ir~~~~~~ 301 (312)
T 3o9z_A 268 EVYRKTLAGEGF---GLDEAAEAIRVAALLRTLPLSQ 301 (312)
T ss_dssp HHHHHHHTTCCE---EHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHcCCCC---ChHHhHHHHHHHHHHhcCCCcC
Confidence 677777766633 6788999999999999776544
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=305.60 Aligned_cols=286 Identities=14% Similarity=0.073 Sum_probs=215.3
Q ss_pred CCccCCceeEEEEEeccHHHHHHHHHHhc---CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 1 MATESQAAIRFGIIGAADIARKLSRAITL---APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~~~~~~~~---~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
|++ +++++||||||+|.||..|++.+.. .+++++++++|++. +++++|+ . +.|++++|+++++|+|
T Consensus 1 M~~-~~~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~-----~a~~~g~----~-~~~~~ell~~~~vD~V 69 (294)
T 1lc0_A 1 MIT-NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-----LGSLDEV----R-QISLEDALRSQEIDVA 69 (294)
T ss_dssp CCC-CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-----CCEETTE----E-BCCHHHHHHCSSEEEE
T ss_pred CCC-CCCcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH-----HHHHcCC----C-CCCHHHHhcCCCCCEE
Confidence 543 4678999999999999999999876 67899999999863 2344554 2 5899999999899999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
+|+||+..|++++++||++||||+||||++.+++++++|.++++++|+.+++++++||.|.++++|++| .+|.|+.
T Consensus 70 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i-~~g~i~~--- 145 (294)
T 1lc0_A 70 YICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREV-LGKELLK--- 145 (294)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHH-TTCCEEE---
T ss_pred EEeCCcHhHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHH-hcCCeeE---
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 7777621
Q ss_pred EEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCc
Q 018020 158 MHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGR 237 (362)
Q Consensus 158 i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~ 237 (362)
....+..... +.+|+..+ ...|+|.+|++++++| +|.+|.+..... .....+.+.+.+++.+|+
T Consensus 146 g~~~~~~~~~----~~~~~~~~--------~~~Gi~~l~~~~~l~G--~~~~v~a~~~~~--~~~~~~~~~~~~~~~~~~ 209 (294)
T 1lc0_A 146 GSLRFTASPL----EEERFGFP--------AFSGISRLTWLVSLFG--ELSLISATLEER--KEDQYMKMTVQLETQNKG 209 (294)
T ss_dssp EEEEEEESCC----CHHHHCCH--------HHHTHHHHHHHHHHHC--SCEEEEEEEEEE--GGGTEEEEEEEEECTTSC
T ss_pred EEEEEecCCC----ChhhccCh--------hhcCccHHHHHHHhcC--CceEEEEEEeec--CccccccEEEEEECCCCc
Confidence 1222221111 11121111 1247999999999999 688888874321 223567888999999999
Q ss_pred EEEEEEeeee--CCceeEEEEeccceEEEcceeccCCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHH
Q 018020 238 VATFSCSFLA--NMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVRE 315 (362)
Q Consensus 238 ~~~~~~~~~~--~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (362)
.+++..+... +...++++.|++|.+..... .......+...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------------------------------~~~~~~~~~~~ 252 (294)
T 1lc0_A 210 LLSWIEEKGPGLKRNRYVNFQFTSGSLEEVPS-------------------------------------VGVNKNIFLKD 252 (294)
T ss_dssp EEEEEEEECTTCCCEEEEEEEESSCEECCCCC-------------------------------------CSCCTTHHHHH
T ss_pred eEEEEeccccccCCCcEEEEEecCCeeEEcCC-------------------------------------CCCcCceehHh
Confidence 8877654432 22346888888886532100 00112344555
Q ss_pred HHHHHHhhhcCCCCCCCchHh--HHHHHHHHHHHHHHHhhC
Q 018020 316 FSRLVANIKNGSKPEQKWPII--SRKTQLIIDAVKTSIERG 354 (362)
Q Consensus 316 ~~~~~~~i~~g~~~~~~~~e~--~l~~~~i~~a~~~S~~~g 354 (362)
..+|+++|+++.++...+.|+ +++++++++|+++|++++
T Consensus 253 ~~~F~~~i~~~~~~~~~~~~~~~~~~~l~~~~ai~~s~~~~ 293 (294)
T 1lc0_A 253 QDIFVQKLLDQVSAEDLAAEKKRIMHCLGLASDIQKLCHQK 293 (294)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHccCCCchhcChHHhhhhHHHHHHHHHHHHhhcC
Confidence 899999999665433334666 999999999999999875
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=253.30 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=164.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.++||+|||+| +|+.|++.+++.+ +++|+||||++++++++++++||++ +|+|+++|+++ +|+|+|+||+..
T Consensus 6 ~~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~----~~~~~~~l~~~--~D~v~i~~p~~~ 78 (372)
T 4gmf_A 6 PKQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIP----LYTSPEQITGM--PDIACIVVRSTV 78 (372)
T ss_dssp -CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCC----EESSGGGCCSC--CSEEEECCC--C
T ss_pred CCCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCC----EECCHHHHhcC--CCEEEEECCCcc
Confidence 48999999999 5999999998887 5999999999999999999999984 79999999975 999999999999
Q ss_pred c----HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhc--CCCCccceEEEE
Q 018020 86 H----VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVS--DPQRFGQLRTMH 159 (362)
Q Consensus 86 h----~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~--~~g~iG~i~~i~ 159 (362)
| ++++++||++||||+||||+ +.+|+++|.++|+++|+.++||+++||.|.++++.+..+ ..+..+++.+++
T Consensus 79 h~~~~~~~a~~al~aGkhVl~EKPl--~~~ea~~l~~~A~~~g~~~~v~~~yr~~p~vr~~i~~~~~l~~~~~~~~~~i~ 156 (372)
T 4gmf_A 79 AGGAGTQLARHFLARGVHVIQEHPL--HPDDISSLQTLAQEQGCCYWINTFYPHTRAGRTWLRDAQQLRRCLAKTPPVVH 156 (372)
T ss_dssp TTSHHHHHHHHHHHTTCEEEEESCC--CHHHHHHHHHHHHHHTCCEEEECSGGGSHHHHHHHHHHHHHHHHHTSCCSEEE
T ss_pred cchhHHHHHHHHHHcCCcEEEecCC--CHHHHHHHHHHHHHcCCEEEEcCcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 8 89999999999999999997 789999999999999999999999999999876644321 234456777777
Q ss_pred EEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEE
Q 018020 160 SCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVA 239 (362)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~ 239 (362)
+.++. +...+.+|++...+|...+........ .. . ..-.+.... ++..+
T Consensus 157 ~~~s~------------------------q~~y~~~dil~~alg~~~~~~~~~~~~---~~-~--~~~~l~~~~-~~vp~ 205 (372)
T 4gmf_A 157 ATTSR------------------------QLLYSTLDLLLLALGVDTAAVECDVVG---SF-S--DFHCLRLFW-PEGEA 205 (372)
T ss_dssp EEECT------------------------TTHHHHHHHHHHHHTCCGGGCEEEEEE---EC-S--SEEEEEEEE-TTEEE
T ss_pred EEecc------------------------ccccchHHHHHHhcCCCcccccccccC---CC-C--CeeEEEEEe-CCeeE
Confidence 65431 223467888888877543322222210 00 1 112233444 35555
Q ss_pred EEEEe-eeeCC--------ceeEEEEeccceEEEcc
Q 018020 240 TFSCS-FLANM--------TMDITATGTNGSLQLHD 266 (362)
Q Consensus 240 ~~~~~-~~~~~--------~~~~~v~G~~G~i~~~~ 266 (362)
++... +..+. -.++++.++.|++.+.+
T Consensus 206 ~l~v~n~l~p~dpD~~~~l~hri~l~~~~G~L~L~~ 241 (372)
T 4gmf_A 206 CLLLQRYLDPDDPDMHSLIMHRLLLGWPEGHLSLEA 241 (372)
T ss_dssp EEEEECEECTTSTTCCCSCSEEEEEEETTEEEEECS
T ss_pred EEEEeceecCCCCCccceEEEEEEEEcCCEEEEeec
Confidence 55543 22221 13688888999988875
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-30 Score=236.72 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=122.4
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|+++||||||+|.||..|++.++++|+++++++||+++++++. +|++ +.+++++++..++|+|+++||+..
T Consensus 7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~----~g~~-----~~~~~~l~~~~~~DvViiatp~~~ 77 (304)
T 3bio_A 7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF----ELQP-----FRVVSDIEQLESVDVALVCSPSRE 77 (304)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----------CCTT-----SCEESSGGGSSSCCEEEECSCHHH
T ss_pred CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH----cCCC-----cCCHHHHHhCCCCCEEEECCCchh
Confidence 5689999999999999999999999999999999999887654 6653 455666666578999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCC-CCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPM-ALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMH 159 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~-~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~ 159 (362)
|.+++..++++||||+||||+ +.+.+++++|.++++++|+.+++++ ||.|.++.++++| ++|.+|++..+.
T Consensus 78 h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~--~~~p~~~~~~~~i-~~g~lG~~~~~~ 149 (304)
T 3bio_A 78 VERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIAS--GWDPGSDSVVRTL-MQAIVPKGITYT 149 (304)
T ss_dssp HHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSC--BBTTBHHHHHHHH-HHHHSCEEEEEE
T ss_pred hHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeC--CCCHHHHHHHHHH-HCCCCCCcEEEE
Confidence 999999999999999999997 8899999999999999999999996 9999999999999 889999998654
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-24 Score=200.77 Aligned_cols=146 Identities=17% Similarity=0.202 Sum_probs=130.2
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhc---------CCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCc
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITL---------APNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~---------~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D 75 (362)
||+++||||||+|.+|..++..+.+ .++++|++|||+++++++.+.. +..+++|++++++++++|
T Consensus 7 MMk~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~------~~~~~~d~~ell~d~diD 80 (444)
T 3mtj_A 7 GMKPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG------GLPLTTNPFDVVDDPEID 80 (444)
T ss_dssp SCSCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT------TCCEESCTHHHHTCTTCC
T ss_pred hhCcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc------cCcccCCHHHHhcCCCCC
Confidence 4578999999999999988877653 2689999999999988776632 236899999999999999
Q ss_pred EEEEcCCC-cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhHHHHHHhhcCCCCcc
Q 018020 76 AVYLPLPT-SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRTAQMKEFVSDPQRFG 153 (362)
Q Consensus 76 ~V~i~~~~-~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~~~~k~~i~~~g~iG 153 (362)
+|+++||+ ..|.+++++||++||||+|||| +.+.+++++|.++|+++|+.++ .++..++.|.++.+|+++ ..+.||
T Consensus 81 vVve~tp~~~~h~~~~~~AL~aGKhVvtenk-al~a~~~~eL~~~A~~~gv~l~~Ea~V~~giPii~~LrelL-~~~~Ig 158 (444)
T 3mtj_A 81 IVVELIGGLEPARELVMQAIANGKHVVTANK-HLVAKYGNEIFAAAQAKGVMVTFEAAVAGGIPIIKALREGL-TANRIE 158 (444)
T ss_dssp EEEECCCSSTTHHHHHHHHHHTTCEEEECCH-HHHHHHHHHHHHHHHHHTCCEECGGGSSTTSCHHHHHHTTT-TTSCEE
T ss_pred EEEEcCCCchHHHHHHHHHHHcCCEEEECCc-ccCHHHHHHHHHHHHHhCCeEEEEEeeeCChHHHHHHHHHH-hCCCCc
Confidence 99999996 8999999999999999999999 7899999999999999999985 677889999999999999 888888
Q ss_pred ceEEE
Q 018020 154 QLRTM 158 (362)
Q Consensus 154 ~i~~i 158 (362)
+|..|
T Consensus 159 ~I~GI 163 (444)
T 3mtj_A 159 WLAGI 163 (444)
T ss_dssp EEEEE
T ss_pred eEEEE
Confidence 88876
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=182.68 Aligned_cols=129 Identities=17% Similarity=0.202 Sum_probs=113.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-CCC------------------CCCcccCCHH
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-NFP------------------PDAKVYGSYE 66 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~~~------------------~~~~~~~~~~ 66 (362)
++++||||||+|.||+.|+..+.+.|+++|++|||+++++++.+++++ |.+ ..+.+|+|++
T Consensus 21 ~k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~e 100 (446)
T 3upl_A 21 GKPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDND 100 (446)
T ss_dssp TCCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHH
T ss_pred CCceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHH
Confidence 568999999999999999999999999999999999999999998875 610 1235799999
Q ss_pred HHhcCCCCcEEEEcCCCc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 67 ALLDDKDIDAVYLPLPTS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
++|+++++|+|+++||+. .|++++++||++||||+|+++ ..+..++.+|.++|+++|+.+++...-+.
T Consensus 101 eLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk-~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp 169 (446)
T 3upl_A 101 LILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNV-EADVTIGPYLKAQADKQGVIYSLGAGDEP 169 (446)
T ss_dssp HHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCH-HHHHHHHHHHHHHHHHHTCCEEECTTSHH
T ss_pred HHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCc-ccCHHHHHHHHHHHHHhCCeeeecCCcch
Confidence 999999999999999985 689999999999999999665 46789999999999999999998875544
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.85 E-value=7e-22 Score=181.19 Aligned_cols=145 Identities=17% Similarity=0.268 Sum_probs=119.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--------CCcEEEEEEcCCHHHH------HHHHHHcCCCCCCcccC--CHHHHhcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--------PNAVLSAVASRSLEKA------TNFAKANNFPPDAKVYG--SYEALLDD 71 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--------~~~~vv~v~d~~~~~~------~~~~~~~~~~~~~~~~~--~~~e~l~~ 71 (362)
++||||||+|.+|+.+++.+.+. ++++|++|||++.++. +.++..++.. .+++ |+++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~---~~~~~~d~~~ll~~ 78 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETG---MLRDDAKAIEVVRS 78 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHS---SCSBCCCHHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCc---cccCCCCHHHHhcC
Confidence 59999999999999999999887 8999999999975432 2233333211 4566 99999999
Q ss_pred CCCcEEEEcCCCccc----HHHHHHHHHcCCeEEEe--CCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhHHHHHH
Q 018020 72 KDIDAVYLPLPTSMH----VKWAISVAQKKKHLLME--KPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRTAQMKE 144 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h----~~~~~~al~~gk~V~~E--KP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~~~~k~ 144 (362)
+++|+|+++||+..| .+++..||++||||+|| ||++ .++++|.++|+++|+.++ .+...++.|.++.+|+
T Consensus 79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla---~~~~eL~~~A~~~g~~~~~ea~v~~g~Pii~~l~~ 155 (327)
T 3do5_A 79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLV---AEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKR 155 (327)
T ss_dssp SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHH---HHHHHHHHHHHHTTCCEECGGGSSTTSCCHHHHHT
T ss_pred CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhH---HHHHHHHHHHHhhCCcEEEEEEeeecCHHHHHHHH
Confidence 999999999999999 99999999999999999 9987 478999999999999765 5777899999999999
Q ss_pred hhcCCCCccceEEEE
Q 018020 145 FVSDPQRFGQLRTMH 159 (362)
Q Consensus 145 ~i~~~g~iG~i~~i~ 159 (362)
++ ..+.||+|..|.
T Consensus 156 ~l-~~~~I~~I~GIl 169 (327)
T 3do5_A 156 YL-ALCEIESVKGIF 169 (327)
T ss_dssp TT-TTSCEEEEEEEC
T ss_pred Hh-hCCCccEEEEEE
Confidence 99 766666666543
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-20 Score=172.04 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=113.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||+|||+|.||+.+++.+.+.+++++++++|+++++ +++ ++ +..++|+++++ .++|+|+++||+..|
T Consensus 2 ~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~--~g----v~~~~d~~~ll--~~~DvViiatp~~~h 71 (320)
T 1f06_A 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK--TP----VFDVADVDKHA--DDVDVLFLCMGSATD 71 (320)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS--SC----EEEGGGGGGTT--TTCSEEEECSCTTTH
T ss_pred CCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc--CC----CceeCCHHHHh--cCCCEEEEcCCcHHH
Confidence 589999999999999999999999999999999998654 222 44 35789999988 479999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHH-HHHHHHHHHcCCEEEEeeecccChhHHHHHHhh
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEF-DVILNACEENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~-~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
.+.+..++++|+||+||||++.+.+++ ++|.+++++++. +.+.++ ||.|.+..+++++
T Consensus 72 ~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~~-v~v~~~-~~~p~~~~l~~~l 130 (320)
T 1f06_A 72 IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN-VALVST-GWDPGMFSINRVY 130 (320)
T ss_dssp HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC-EEECSC-SBTTBHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCCC-EEEEec-CChHHHHHHHHHH
Confidence 999999999999999999999999999 999999997664 555666 9999999999998
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-20 Score=173.14 Aligned_cols=145 Identities=17% Similarity=0.167 Sum_probs=117.1
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC-------CcEEEEEEcCCHHHHHH------HHHHc---CCCCCCcccC---CHH
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP-------NAVLSAVASRSLEKATN------FAKAN---NFPPDAKVYG---SYE 66 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~-------~~~vv~v~d~~~~~~~~------~~~~~---~~~~~~~~~~---~~~ 66 (362)
|+++||||||+|.+|+.+++.+.+.+ +++|++|+|++.++++. +++.+ +++ .+++ |++
T Consensus 4 M~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~ 80 (331)
T 3c8m_A 4 MKTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLD---SLEYESISAS 80 (331)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGG---GCCSEECCHH
T ss_pred CcEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcc---cccCCCCCHH
Confidence 56899999999999999999987765 68999999998765433 23322 221 2566 999
Q ss_pred HHhcCCCCcEEEEcCCCc----ccHHHHHHHHHcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhH
Q 018020 67 ALLDDKDIDAVYLPLPTS----MHVKWAISVAQKKKHLLM--EKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRT 139 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~----~h~~~~~~al~~gk~V~~--EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~ 139 (362)
+++ ++++|+|+++||+. .|.+++++||++||||+| +||+ .+++++|.++|+++|+.+. .+...++.|.+
T Consensus 81 ~ll-~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pl---a~~~~eL~~~A~~~gv~~~~ea~vg~giPii 156 (331)
T 3c8m_A 81 EAL-ARDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGL---ANFWPEIMEYARSNNRRIRYEATVAGGVPLF 156 (331)
T ss_dssp HHH-HSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHH---HHHHHHHHHHHHHHTCCEECGGGSSTTSCCH
T ss_pred HHh-CCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhh---HHHHHHHHHHHHHcCCEEEEEeecccccHHH
Confidence 999 88999999999996 899999999999999998 3575 5789999999999998664 34455677999
Q ss_pred HHHHHhhcCCCCccceEEE
Q 018020 140 AQMKEFVSDPQRFGQLRTM 158 (362)
Q Consensus 140 ~~~k~~i~~~g~iG~i~~i 158 (362)
+.+|+++ ..+.|++|..+
T Consensus 157 ~~l~~~l-~g~~I~~I~GI 174 (331)
T 3c8m_A 157 SFIDYSV-LPSRIKKFRGI 174 (331)
T ss_dssp HHHHHHS-TTCCCCEEEEE
T ss_pred HHHHHHh-hcCcccEEEEE
Confidence 9999999 76677666553
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-19 Score=166.82 Aligned_cols=146 Identities=10% Similarity=0.155 Sum_probs=118.1
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHHHHHHHHHHc-CCCCCCcccCCHHHHhcCC-----CC--
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLEKATNFAKAN-NFPPDAKVYGSYEALLDDK-----DI-- 74 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~-----~~-- 74 (362)
.+++||||||+|.+|+.+++.+.+.+ ++++++|+|++.. .++++| |+ ..+++++++++++ ++
T Consensus 2 ~k~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~---~~~~~~~gi----~~~~~~~e~l~~~~~~~~did~ 74 (358)
T 1ebf_A 2 TKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERS---LISKDFSPL----NVGSDWKAALAASTTKTLPLDD 74 (358)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBE---EECSSCSCC----SCTTCHHHHHHTCCCBCCCHHH
T ss_pred CceEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChh---hhccccCCC----CccccHHHHHhcccCCCCCHHH
Confidence 35899999999999999999998876 6899999997532 233444 54 3568999998765 45
Q ss_pred -----------cEEEEcCCCcccHHHHHHHHHcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCEEEE-eeecccChhHH
Q 018020 75 -----------DAVYLPLPTSMHVKWAISVAQKKKHLLM--EKPMALNVAEFDVILNACEENGVQLMD-GTMWVHNPRTA 140 (362)
Q Consensus 75 -----------D~V~i~~~~~~h~~~~~~al~~gk~V~~--EKP~~~~~~~~~~l~~~a~~~~~~~~v-~~~~r~~p~~~ 140 (362)
|+|++|||+..|.....+||++||||+| |||++.+.+++++|. +|+++|+.+.. +...++.|.++
T Consensus 75 v~e~~~~~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~-~A~~~gv~~~~Ea~vg~giPii~ 153 (358)
T 1ebf_A 75 LIAHLKTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALF-SNKPTNGFVYHEATVGAGLPIIS 153 (358)
T ss_dssp HHHHHTTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHT-CCCTTCCCEECGGGTTTTSSCHH
T ss_pred HHHHhhhccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHH-HHHHcCCEEEEccccccCCcHHH
Confidence 7999999999999999999999999999 999999999999999 99999987643 23445569999
Q ss_pred HHHHhhcCCCCccceEEEEEEe
Q 018020 141 QMKEFVSDPQRFGQLRTMHSCF 162 (362)
Q Consensus 141 ~~k~~i~~~g~iG~i~~i~~~~ 162 (362)
.+|+++ +.| ++|..++..+
T Consensus 154 ~l~~~l-~~G--~~I~~I~GIl 172 (358)
T 1ebf_A 154 FLREII-QTG--DEVEKIEGIF 172 (358)
T ss_dssp HHHHHH-HHT--CCEEEEEEEC
T ss_pred HHHHHH-HcC--CCeEEEEEEE
Confidence 999999 544 3555555543
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-19 Score=164.56 Aligned_cols=136 Identities=11% Similarity=0.150 Sum_probs=112.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC--------CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP--------NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~--------~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
+++||||||+|.+|+.+++.+++.+ +++|++|+|++.++.+. ++. ..+++|+++++ ++|+|+
T Consensus 2 k~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~----~~~---~~~~~d~~~ll---~iDvVv 71 (332)
T 2ejw_A 2 EALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRA----IPQ---ELLRAEPFDLL---EADLVV 71 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCS----SCG---GGEESSCCCCT---TCSEEE
T ss_pred CeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhc----cCc---ccccCCHHHHh---CCCEEE
Confidence 5799999999999999999998887 78999999998764332 221 25789999999 699999
Q ss_pred EcCCCcc-cHHHHHHHHHcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccce
Q 018020 79 LPLPTSM-HVKWAISVAQKKKHLLM--EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQL 155 (362)
Q Consensus 79 i~~~~~~-h~~~~~~al~~gk~V~~--EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i 155 (362)
++||+.. |.+++++||++||||+| +||++ +++++|.++|+++ ..++.+..-.+.|.++.+| .+ ..+.||+|
T Consensus 72 e~t~~~~~a~~~~~~AL~aGKhVVtaNkkpla---~~~~eL~~~A~~~-~~~~Ea~vg~giPii~~l~-~l-~~~~I~~I 145 (332)
T 2ejw_A 72 EAMGGVEAPLRLVLPALEAGIPLITANKALLA---EAWESLRPFAEEG-LIYHEASVMAGTPALSFLE-TL-RGSELLEL 145 (332)
T ss_dssp ECCCCSHHHHHHHHHHHHTTCCEEECCHHHHH---HSHHHHHHHHHTT-CEECGGGTTTTSSSHHHHH-HH-TTSEEEEE
T ss_pred ECCCCcHHHHHHHHHHHHcCCeEEECCchhHH---HHHHHHHHHHHhC-CeEEEEEcccCCHHHHHHH-Hh-cCCCcceE
Confidence 9999985 57899999999999999 78976 7899999999988 4555555566679999999 88 77777776
Q ss_pred EEE
Q 018020 156 RTM 158 (362)
Q Consensus 156 ~~i 158 (362)
..+
T Consensus 146 ~gI 148 (332)
T 2ejw_A 146 HGI 148 (332)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=155.49 Aligned_cols=150 Identities=12% Similarity=0.118 Sum_probs=117.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC------CCcEEEEEEcCCHH---------HHHHHHHHcC-CCCCCcccCCHHHHh
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA------PNAVLSAVASRSLE---------KATNFAKANN-FPPDAKVYGSYEALL 69 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~------~~~~vv~v~d~~~~---------~~~~~~~~~~-~~~~~~~~~~~~e~l 69 (362)
|+++||+|||+|.+|+.+++.+.+. ++++|++|+|++.+ +.....++++ ++ . ..+ |+++++
T Consensus 2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~-~~~-d~~e~l 78 (325)
T 3ing_A 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-D-RAF-SGPEDL 78 (325)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-S-SBC-CSGGGG
T ss_pred CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-c-ccC-CHHHHh
Confidence 5689999999999999999988765 68999999998753 3334445555 32 1 134 889999
Q ss_pred cCCCCcEEEEcCCCccc----HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChhHHHHHH
Q 018020 70 DDKDIDAVYLPLPTSMH----VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPRTAQMKE 144 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h----~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~~~~~k~ 144 (362)
+++++|+|+.+||+..| .+++.+||++||||+++++. ...+++++|.++|+++|+.++ .+.--...|.++.+++
T Consensus 79 ~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~-~la~~~~eL~~lA~~~g~~~~~Ea~vg~giPii~~l~~ 157 (325)
T 3ing_A 79 MGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKS-GLANKWHDIMDSANQNSKYIRYEATVAGGVPLFSVLDY 157 (325)
T ss_dssp TTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCH-HHHHHHHHHHHHHHHHTCCEECGGGSSTTSCCHHHHHH
T ss_pred cCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCch-hHHHHHHHHHHHHHHcCCeEEEEeeecccCHHHHHHHH
Confidence 99999999999999877 58999999999999997542 234899999999999999764 3455567899999999
Q ss_pred hhcCCCCccceEEEEEEee
Q 018020 145 FVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 145 ~i~~~g~iG~i~~i~~~~~ 163 (362)
++ .. ++|..++..++
T Consensus 158 ~l-~g---~~I~~i~Gi~n 172 (325)
T 3ing_A 158 SI-LP---SKVKRFRGIVS 172 (325)
T ss_dssp TC-TT---CCEEEEEEECC
T ss_pred Hh-hC---CCeeEEEEEEE
Confidence 98 54 45555655554
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-20 Score=170.49 Aligned_cols=99 Identities=22% Similarity=0.264 Sum_probs=89.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHHhcC---CCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~ 81 (362)
+++||||||+|.+|..++..+.+ +|++++++++|+++++ ++++++++|++ ..++++++++++ +++|+|+++|
T Consensus 3 ~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~---~~~~~~e~ll~~~~~~~iDvV~~at 79 (312)
T 1nvm_B 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVT---TTYAGVEGLIKLPEFADIDFVFDAT 79 (312)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCC---EESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCC---cccCCHHHHHhccCCCCCcEEEECC
Confidence 47999999999999999999865 8999999999999888 78889999864 356789999987 7899999999
Q ss_pred CCcccHHHHHHHHHc--CCeEEEeCCCCC
Q 018020 82 PTSMHVKWAISVAQK--KKHLLMEKPMAL 108 (362)
Q Consensus 82 ~~~~h~~~~~~al~~--gk~V~~EKP~~~ 108 (362)
|+..|.+++..++++ ||||+||||.+.
T Consensus 80 p~~~h~~~a~~al~a~~Gk~Vi~ekp~~~ 108 (312)
T 1nvm_B 80 SASAHVQNEALLRQAKPGIRLIDLTPAAI 108 (312)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEECSTTCS
T ss_pred ChHHHHHHHHHHHHhCCCCEEEEcCcccc
Confidence 999999999999999 999999999763
|
| >1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=147.79 Aligned_cols=213 Identities=13% Similarity=0.081 Sum_probs=160.6
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCC-cEEEEE-EcCCHHHHHHHHHHcCCCCCCccc----------------------
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPN-AVLSAV-ASRSLEKATNFAKANNFPPDAKVY---------------------- 62 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v-~d~~~~~~~~~~~~~~~~~~~~~~---------------------- 62 (362)
++||+|+|+ |++|..++..++++|+ ++++++ ++++.+++.+.+++|+.. ..+.
T Consensus 4 m~rI~ILGsTGSIG~~~l~vi~~~p~~~~v~al~ag~ni~~l~~~~~~f~~~--~v~v~d~~~~~~l~~~l~~~~~~v~~ 81 (388)
T 1r0k_A 4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAK--RAVIADPSLYNDLKEALAGSSVEAAA 81 (388)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCS--EEEESCGGGHHHHHHHTTTCSSEEEE
T ss_pred ceEEEEECCCeEeHHHHHHHHHhCcCcEEEEEEEcCCCHHHHHHHHHHcCCc--EEEEcChHHHHHHHHHhccCCcEEEe
Confidence 489999999 9999999999999987 999999 999999999999999853 1111
Q ss_pred --CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEe-CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhH
Q 018020 63 --GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLME-KPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRT 139 (362)
Q Consensus 63 --~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E-KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~ 139 (362)
+++.++++++ +|+|+.+++...+.+.+.+|+++||||++. |+ ..+.....|.++|+++|+.+... .+..
T Consensus 82 g~~~~~el~~~~-iDvVV~ai~G~aGl~ptlaAi~aGK~VvlANKE--~lv~~G~~l~~~A~~~gv~liPV-----Dseh 153 (388)
T 1r0k_A 82 GADALVEAAMMG-ADWTMAAIIGCAGLKATLAAIRKGKTVALANKE--SLVSAGGLMIDAVREHGTTLLPV-----DSEH 153 (388)
T ss_dssp SHHHHHHHHTSC-CSEEEECCCSGGGHHHHHHHHHTTSEEEECCSH--HHHTTHHHHHHHHHHHTCEEEEC-----SHHH
T ss_pred CccHHHHHHcCC-CCEEEEeCCCHHHHHHHHHHHHCCCEEEEeCcH--HHHhhHHHHHHHHHHcCCEEEEe-----chhH
Confidence 1223677777 999999999999999999999999999996 87 57788899999999999998643 6678
Q ss_pred HHHHHhhcCCCCccceEEEEEEeeecCCccccc--------------CccCcCCCC-CCCcccccccchHHHHHHHHccC
Q 018020 140 AQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLK--------------NDIRVKPDL-DGLGALGDAGWYGIRSILWANDY 204 (362)
Q Consensus 140 ~~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~--------------~~w~~~~~~-~ggg~l~~~g~h~id~~~~l~g~ 204 (362)
..+++.+ ..+.+++|..+...-+..+...+.. .+|..-... -....+.|-|-|.++ .+||||.
T Consensus 154 ~Ai~q~L-~g~~i~~v~~IilTaSGGpfr~~~~~~l~~vt~~~Al~hp~W~mG~KitiDSAtm~NkglevIE-a~~Lf~~ 231 (388)
T 1r0k_A 154 NAIFQCF-PHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIE-AFHLFQI 231 (388)
T ss_dssp HHHHHHC-CTTCGGGEEEEEEEECCCTTTTCCHHHHTTCCHHHHHC------CHHHHHHHHHTHHHHHHHHH-HHHHHCC
T ss_pred HHHHHHh-hCCCccceeEEEEEeecccccCCCHHHHhcCCHHHhccCCCCCCcchhhhHHHHHHcCcCcccc-ccccCCC
Confidence 8999999 7778888887766654321111100 123321000 012567888999999 9999995
Q ss_pred CCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcEEE
Q 018020 205 ELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVAT 240 (362)
Q Consensus 205 ~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~ 240 (362)
+++++.....+ .+..+.+++|.||.+..
T Consensus 232 -~~~~I~vvvhp-------qsiihsmV~f~dGsv~a 259 (388)
T 1r0k_A 232 -PLEKFEILVHP-------QSVIHSMVEYLDGSILA 259 (388)
T ss_dssp -CGGGEEEEECT-------TCCEEEEEEETTSCEEE
T ss_pred -CHHHeeeeech-------hHeeEEEEEEcCCcEEE
Confidence 47888887432 23668999999998743
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.7e-17 Score=147.68 Aligned_cols=208 Identities=12% Similarity=0.077 Sum_probs=158.0
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEE-EcCCHHHHHHHHHHcCCCCCCccc-----CCH--------------H
Q 018020 8 AIRFGIIG-AADIARKLSRAITLAPNAVLSAV-ASRSLEKATNFAKANNFPPDAKVY-----GSY--------------E 66 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v-~d~~~~~~~~~~~~~~~~~~~~~~-----~~~--------------~ 66 (362)
+.||+|+| +|+||..++..++++++++|+++ ++++.+.+.+.+++|+.. ++ .++ .
T Consensus 3 ~k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p~----~v~v~~~~~~~~~l~~~~~G~~~l~ 78 (376)
T 3a06_A 3 ERTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNVK----NVAITGDVEFEDSSINVWKGSHSIE 78 (376)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTCC----EEEECSSCCCCCSSSEEEESTTHHH
T ss_pred cceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCCC----EEEEccHHHHHHHHHHHccCHHHHH
Confidence 47899999 69999999999988877999999 899999999999999842 33 333 5
Q ss_pred HHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE-eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM-EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~-EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
++++.+++|+|+++++...|...+..|+++||||.+ +| ...+..+..+.++++++|..++.-.+ ++++.+|.++
T Consensus 79 el~~~~~~D~Vv~AivG~aGL~ptlaAi~aGK~vaLANK--EsLV~aG~li~~~a~~~g~~llPVDS-EHsAifQ~L~-- 153 (376)
T 3a06_A 79 EMLEALKPDITMVAVSGFSGLRAVLASLEHSKRVCLANK--ESLVCGGFLVKKKLKEKGTELIPVDS-EHSAIFQVME-- 153 (376)
T ss_dssp HHHHHHCCSEEEECCCSTTHHHHHHHHHHHCSEEEECCS--HHHHHHHHHHHHHHHHHCCEEEECSH-HHHHHHHHCC--
T ss_pred HHhcCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEeCh--HHHHhhHHHHHHHHHHcCCEEEEEcc-ccCHHHHHHH--
Confidence 888777899999999999999999999999999999 99 56788999999999999999998776 7777766664
Q ss_pred hcCCCCccceEEEEEEeeecCCccc-------------c-cCccCcCCCC-CCCcccccccchHHHHHHHHccCCCCcEE
Q 018020 146 VSDPQRFGQLRTMHSCFSFAGDAEF-------------L-KNDIRVKPDL-DGLGALGDAGWYGIRSILWANDYELPKTV 210 (362)
Q Consensus 146 i~~~g~iG~i~~i~~~~~~~~~~~~-------------~-~~~w~~~~~~-~ggg~l~~~g~h~id~~~~l~g~~~~~~V 210 (362)
+.+++| -..-+..+...+ . .++|..-+.. -...-|.+-|-|.|+ ..||||. ++++|
T Consensus 154 ----~~v~ki---iLTASGGpFr~~~~~~l~~vt~~~Al~HPnW~MG~KITiDSATmmNKGlEvIE-A~wLF~~-~~~~I 224 (376)
T 3a06_A 154 ----PEVEKV---VLTASGGALRDWKISKIDRARPEDVLKHPVWNMGARITVDSATMVNKAFEVLE-AMELFEL-PFEKI 224 (376)
T ss_dssp ----SSCSEE---EEEECCCTTSSSCHHHHTTCCGGGTCCCSSCCCCHHHHHHHHHTHHHHHHHHH-HHHHHTC-CGGGE
T ss_pred ----hhhceE---EEeccCCcccCCCHHHHhhCCHHHhccCCCCCCCCeEEecHHHHHHHHHHHHH-HHHHcCC-ChheE
Confidence 334543 333222211111 0 0234321100 012567888999999 9999995 47888
Q ss_pred EEeeccccCCCCeeEeeEEEEEeCCCcEEE
Q 018020 211 IAMHGPVLNEAGVILSCGASLHWDDGRVAT 240 (362)
Q Consensus 211 ~a~~~~~~~~~~~~d~~~~~~~~~~G~~~~ 240 (362)
.....+ .+..+.+++|.||.+..
T Consensus 225 ~vvvHp-------qSiIHsmVef~DGsv~A 247 (376)
T 3a06_A 225 EVKIHR-------EGLVHGAVVLPDGNVKM 247 (376)
T ss_dssp EEEECT-------TCCEEEEEECTTSCEEE
T ss_pred EEEECC-------CCeEEEEEEEcCCcEEE
Confidence 887431 36789999999998744
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-17 Score=144.34 Aligned_cols=110 Identities=14% Similarity=0.215 Sum_probs=97.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||||||+|.||+.++..+. .+++++++++|+++ +++ ..++|++++++ .++|+|++++|+..|.+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~-~~~------------~~~~~~~~l~~-~~~DvVv~~~~~~~~~~ 65 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRG-EHE------------KMVRGIDEFLQ-REMDVAVEAASQQAVKD 65 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSC-CCT------------TEESSHHHHTT-SCCSEEEECSCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCc-chh------------hhcCCHHHHhc-CCCCEEEECCCHHHHHH
Confidence 58999999999999999988 47899999999874 221 16889999996 57999999999999999
Q ss_pred HHHHHHHcCCeEEEeCCCCCCHHHH-HHHHHHHHHcCCEEEEeeec
Q 018020 89 WAISVAQKKKHLLMEKPMALNVAEF-DVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 89 ~~~~al~~gk~V~~EKP~~~~~~~~-~~l~~~a~~~~~~~~v~~~~ 133 (362)
++..++++|+||+||||++.+.+++ ++|.+.++++|+.+++..+.
T Consensus 66 ~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~ 111 (236)
T 2dc1_A 66 YAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGA 111 (236)
T ss_dssp HHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTT
T ss_pred HHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCcc
Confidence 9999999999999999999998888 99999999999987766554
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-17 Score=152.26 Aligned_cols=147 Identities=15% Similarity=0.161 Sum_probs=110.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--------------CCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--------------DAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~e~l~~~~ 73 (362)
++||||||+|.+|+.+++.+.++|+++|++++|++++++..+++.+|++. +..++.|+++++. +
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~--~ 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--K 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--T
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhcc--C
Confidence 48999999999999999999999999999999998888888888776420 1246789999996 6
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCH------HHHHHHHHHHHHcCCEEEEeeecc-cChhHHHHHHhh
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNV------AEFDVILNACEENGVQLMDGTMWV-HNPRTAQMKEFV 146 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~------~~~~~l~~~a~~~~~~~~v~~~~r-~~p~~~~~k~~i 146 (362)
+|+|++|||+..|.+.+..++++||||+||||...+. -+.. .+.+++.++....++... +.|.++.+++.|
T Consensus 80 vDvV~~aTp~~~h~~~a~~~l~aGk~Vi~sap~~~d~~~~~~v~~vn--~~~~~~~~ii~~~~C~t~~l~P~~~~l~~~I 157 (334)
T 2czc_A 80 VDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKADVAEVSFVAQAN--YEAALGKNYVRVVSCNTTGLVRTLSAIREYA 157 (334)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCGGGSSEEECHHHH--GGGGTTCSEEEECCHHHHHHHHHHHHHGGGE
T ss_pred CCEEEECCCccccHHHHHHHHHcCCceEeecccccccccceEEeccC--HHHHhhCCcEEecCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999974210 0111 011222344444444433 568888888887
Q ss_pred cCCCCccceEEEE
Q 018020 147 SDPQRFGQLRTMH 159 (362)
Q Consensus 147 ~~~g~iG~i~~i~ 159 (362)
++|.+|.+..+.
T Consensus 158 -~~g~i~ti~a~s 169 (334)
T 2czc_A 158 -DYVYAVMIRRAA 169 (334)
T ss_dssp -EEEEEEEEEESS
T ss_pred -ccccEEEEEEec
Confidence 666665554433
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-16 Score=140.38 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=117.3
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHH--HHHHHHHcCCC-CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEK--ATNFAKANNFP-PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--~~~~~~~~~~~-~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
++|||+|+|+ |.||+.++..+...++++|++++|+++++ .+.+.+..++. .++.+++|++++++ ++|+|+.+|+
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~--~~DvVIDft~ 81 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKD--DFDVFIDFTR 81 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTT--SCSEEEECSC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhc--CCCEEEEcCC
Confidence 5799999998 99999999999889999999999987643 11121222221 23456889999986 5999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCcc---ceEEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFG---QLRTMH 159 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG---~i~~i~ 159 (362)
|..|.+.+..|+++|+||+|+|| +.+.++.++|.+++++.++.+..++....+..++.+++.. ..++ +|..++
T Consensus 82 p~~~~~~~~~a~~~G~~vVigTt-G~~~e~~~~L~~~a~~~~vv~a~N~siGvn~~~~l~~~aa---~~~~~~~dieiiE 157 (273)
T 1dih_A 82 PEGTLNHLAFCRQHGKGMVIGTT-GFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAA---KVMGDYTDIEIIE 157 (273)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCC-CCCHHHHHHHHHHTTTSCEEECSCCCHHHHHHHHHHHHHH---HHHTTTSEEEEEE
T ss_pred hHHHHHHHHHHHhCCCCEEEECC-CCCHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHHHHHH---HhcCCCCCEEEEE
Confidence 99999999999999999999999 7899999999999988887777776776666666555554 2333 677777
Q ss_pred EEe
Q 018020 160 SCF 162 (362)
Q Consensus 160 ~~~ 162 (362)
.+.
T Consensus 158 ~Hh 160 (273)
T 1dih_A 158 AHH 160 (273)
T ss_dssp EEC
T ss_pred eec
Confidence 653
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-15 Score=134.11 Aligned_cols=118 Identities=9% Similarity=0.067 Sum_probs=99.4
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.+++||+|+|+ |.+|+.|++.+++. ++++++.+++.... + +.+|+ .+|.|++++++++++|+|+|++|+.
T Consensus 5 ~~~~rVaViG~sG~~G~~~~~~l~~~-g~~~V~~V~p~~~g-~---~~~G~----~vy~sl~el~~~~~~D~viI~tP~~ 75 (288)
T 2nu8_A 5 DKNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKGG-T---THLGL----PVFNTVREAVAATGATASVIYVPAP 75 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTT-C---EETTE----EEESSHHHHHHHHCCCEEEECCCGG
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCccc-c---eeCCe----eccCCHHHHhhcCCCCEEEEecCHH
Confidence 46799999998 99999999999876 68888888875210 1 13454 5899999999855699999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
.|.+++.+|+++|+|++++.+-+.+.++.++|.+.|+++|+.+ ++.|.
T Consensus 76 ~~~~~~~ea~~~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~l-iGPNc 123 (288)
T 2nu8_A 76 FCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRM-IGPNT 123 (288)
T ss_dssp GHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEE-ECSSC
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEE-EecCC
Confidence 9999999999999999999888889999999999999999976 44443
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-14 Score=125.62 Aligned_cols=149 Identities=11% Similarity=0.118 Sum_probs=108.7
Q ss_pred CceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHH--HHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 6 QAAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEK--ATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 6 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|++|||+|+| +|.||+.+++.+.+.|+++|++++|++... .+.+.+-.|+.+++.+++|++++++. +|+|+.+|+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~--~DVVIDfT~ 82 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAE--ADYLIDFTL 82 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHH--CSEEEECSC
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcC--CCEEEEcCC
Confidence 3479999999 899999999999999999999999987432 11122223444466789999999984 999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcC-CCCcc---ceEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSD-PQRFG---QLRTM 158 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~-~g~iG---~i~~i 158 (362)
+..+.+.+..|+++|+||++-.. ..+.++.++|.++|++.++.+..| |+..+..+.++++. ...++ +|..+
T Consensus 83 p~a~~~~~~~al~~G~~vVigTT-G~s~~~~~~L~~aa~~~~vv~a~N----~s~Gv~l~~~~~~~aa~~l~~~~diei~ 157 (272)
T 4f3y_A 83 PEGTLVHLDAALRHDVKLVIGTT-GFSEPQKAQLRAAGEKIALVFSAN----MSVGVNVTMKLLEFAAKQFAQGYDIEII 157 (272)
T ss_dssp HHHHHHHHHHHHHHTCEEEECCC-CCCHHHHHHHHHHTTTSEEEECSC----CCHHHHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEECC-CCCHHHHHHHHHHhccCCEEEECC----CCHHHHHHHHHHHHHHHhcCcCCCEEEE
Confidence 99999999999999999999765 578888999999998755433333 34444333333210 12334 56666
Q ss_pred EEE
Q 018020 159 HSC 161 (362)
Q Consensus 159 ~~~ 161 (362)
+.+
T Consensus 158 E~H 160 (272)
T 4f3y_A 158 EAH 160 (272)
T ss_dssp EEE
T ss_pred Eec
Confidence 665
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.2e-14 Score=121.98 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=84.6
Q ss_pred ceeEEEEEeccHHHHHHHHHH-hcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAI-TLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~-~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+..||+|||+|.+|..++..+ ... +++++|++|.++++...... |++ +..++++++++++ ++|+|+|++|+..
T Consensus 79 ~~~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~--gv~--V~~~~dl~ell~~-~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 79 RKWGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVR--GGV--IEHVDLLPQRVPG-RIEIALLTVPREA 152 (211)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEET--TEE--EEEGGGHHHHSTT-TCCEEEECSCHHH
T ss_pred CCCEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhc--CCe--eecHHhHHHHHHc-CCCEEEEeCCchh
Confidence 468999999999999999863 344 89999999999876654333 222 2347899999998 9999999999999
Q ss_pred cHHHHHHHHHcCCe-EEEeCCCCCCHHHH
Q 018020 86 HVKWAISVAQKKKH-LLMEKPMALNVAEF 113 (362)
Q Consensus 86 h~~~~~~al~~gk~-V~~EKP~~~~~~~~ 113 (362)
|.+++..++++|++ |++|||+..+++++
T Consensus 153 ~~ei~~~l~~aGi~~Ilnf~P~~l~vp~~ 181 (211)
T 2dt5_A 153 AQKAADLLVAAGIKGILNFAPVVLEVPKE 181 (211)
T ss_dssp HHHHHHHHHHHTCCEEEECSSSCCCCCTT
T ss_pred HHHHHHHHHHcCCCEEEECCcccccCCCC
Confidence 99999999999976 88999999988753
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.40 E-value=5e-13 Score=119.40 Aligned_cols=150 Identities=13% Similarity=0.121 Sum_probs=107.1
Q ss_pred CCceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHH--HHHHHHHcCC-CCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 5 SQAAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEK--ATNFAKANNF-PPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 5 ~~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|++++||+|+| +|.||+.+++.+.+.|+++|++++|++... .+.+.+..|+ +.++.+++|++++++ ++|+|+.+
T Consensus 18 m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~--~aDVvIDF 95 (288)
T 3ijp_A 18 GPGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFS--NTEGILDF 95 (288)
T ss_dssp ---CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTT--SCSEEEEC
T ss_pred ccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhc--CCCEEEEc
Confidence 34689999999 899999999999999999999999986421 1111122222 235678999999997 59999999
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcC-CCCcc---ceE
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSD-PQRFG---QLR 156 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~-~g~iG---~i~ 156 (362)
|++..+.+.+..|+++|+++++-.. +.+.++..+|.++|++.++.+..| |+..+..+.++++. ...++ +|.
T Consensus 96 T~p~a~~~~~~~~l~~Gv~vViGTT-G~~~e~~~~L~~aa~~~~~~~a~N----~SiGv~ll~~l~~~aa~~l~~~~die 170 (288)
T 3ijp_A 96 SQPQASVLYANYAAQKSLIHIIGTT-GFSKTEEAQIADFAKYTTIVKSGN----MSLGVNLLANLVKRAAKALDDDFDIE 170 (288)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECCC-CCCHHHHHHHHHHHTTSEEEECSC----CCHHHHHHHHHHHHHHHHSCTTSEEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECC-CCCHHHHHHHHHHhCcCCEEEECC----CcHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 9999999999999999999998765 467888889999998744433322 34444443333310 12344 566
Q ss_pred EEEEE
Q 018020 157 TMHSC 161 (362)
Q Consensus 157 ~i~~~ 161 (362)
.++.+
T Consensus 171 IiE~H 175 (288)
T 3ijp_A 171 IYEMH 175 (288)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 66664
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-13 Score=130.02 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=114.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCC---CCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPP---DAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~---~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..+|+|+|+|.+|+.++..+.+. +.+ +.++|++++++++++++++ +.. ++.-.++++++++ ++|+|+.++|.
T Consensus 3 ~k~VlViGaG~iG~~ia~~L~~~-G~~-V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~--~~DvVIn~a~~ 78 (450)
T 1ff9_A 3 TKSVLMLGSGFVTRPTLDVLTDS-GIK-VTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPY 78 (450)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTT-TCE-EEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-cCE-EEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHc--CCcEEEECCcc
Confidence 46899999999999999999865 677 5588999998888776653 100 0111124446666 59999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCC-Cc-cceEEEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ-RF-GQLRTMHSC 161 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g-~i-G~i~~i~~~ 161 (362)
..|.++...++++|+||+++ +.......++.+.|+++|+.++.++..+..+....+++++ +++ .. |++..+...
T Consensus 79 ~~~~~i~~a~l~~g~~vvd~---~~~~~~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li-~q~~~~gg~i~~~~~~ 154 (450)
T 1ff9_A 79 TFHATVIKSAIRQKKHVVTT---SYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTI-EEVHAAGGKIKTFLSY 154 (450)
T ss_dssp -CHHHHHHHHHHHTCEEEES---SCCCHHHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHH-HHHHHTTCEEEEEEEE
T ss_pred ccchHHHHHHHhCCCeEEEe---ecccHHHHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHH-HHhcccCCeeeEEEEE
Confidence 99999999999999999997 4556678999999999999999999998888889999998 544 23 566666665
Q ss_pred eee
Q 018020 162 FSF 164 (362)
Q Consensus 162 ~~~ 164 (362)
...
T Consensus 155 ~G~ 157 (450)
T 1ff9_A 155 CGG 157 (450)
T ss_dssp EEE
T ss_pred Ecc
Confidence 443
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=114.77 Aligned_cols=102 Identities=8% Similarity=0.074 Sum_probs=85.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|+|+|.||+.++..+.+.++ +|++++|++.+. ..|+ .+++|+++++ ++|+|+-+|.+....
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~------~~gv----~v~~dl~~l~---~~DVvIDft~p~a~~ 68 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKA------TTPY----QQYQHIADVK---GADVAIDFSNPNLLF 68 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC--------CCS----CBCSCTTTCT---TCSEEEECSCHHHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCccc------cCCC----ceeCCHHHHh---CCCEEEEeCChHHHH
Confidence 6999999999999999999999989 999999987652 3554 5899999987 599999777777666
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
+.+. +++|+|+++.++ +.+.++.++|.++|++.++.
T Consensus 69 ~~~~--l~~g~~vVigTT-G~s~e~~~~l~~aa~~~~v~ 104 (243)
T 3qy9_A 69 PLLD--EDFHLPLVVATT-GEKEKLLNKLDELSQNMPVF 104 (243)
T ss_dssp HHHT--SCCCCCEEECCC-SSHHHHHHHHHHHTTTSEEE
T ss_pred HHHH--HhcCCceEeCCC-CCCHHHHHHHHHHHhcCCEE
Confidence 6665 999999999887 57888999999999885543
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-13 Score=114.23 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=78.5
Q ss_pred ceeEEEEEeccHHHHHHHHH-HhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRA-ITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~-~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++.||+|||+|.+|..++.. ....++++++|++|.++++...... |++ +..++++++++++. |+|+|++|...
T Consensus 84 ~~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~--gv~--V~~~~dl~eli~~~--D~ViIAvPs~~ 157 (215)
T 2vt3_A 84 EMTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVG--GVP--VYNLDDLEQHVKDE--SVAILTVPAVA 157 (215)
T ss_dssp ---CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEET--TEE--EEEGGGHHHHCSSC--CEEEECSCHHH
T ss_pred CCCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhc--CCe--eechhhHHHHHHhC--CEEEEecCchh
Confidence 46899999999999999985 3345689999999999886654333 222 23478899999874 99999999999
Q ss_pred cHHHHHHHHHcCCe-EEEeCCCCCCHHHH
Q 018020 86 HVKWAISVAQKKKH-LLMEKPMALNVAEF 113 (362)
Q Consensus 86 h~~~~~~al~~gk~-V~~EKP~~~~~~~~ 113 (362)
|.+++..++++|++ |+++||+..++.++
T Consensus 158 ~~ei~~~l~~aGi~~Ilnf~P~~l~vp~~ 186 (215)
T 2vt3_A 158 AQSITDRLVALGIKGILNFTPARLNVPEH 186 (215)
T ss_dssp HHHHHHHHHHTTCCEEEECSSCCCCCCTT
T ss_pred HHHHHHHHHHcCCCEEEEcCceeccCCCc
Confidence 99999999999987 99999999998764
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.5e-10 Score=101.47 Aligned_cols=130 Identities=13% Similarity=0.174 Sum_probs=101.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|+|+ |.||+.++..+...|+++|++++|++ +|+++++. .++|+|+-+|++..+.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~--------------------~dl~~~~~-~~~DvvIDfT~p~a~~ 59 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG--------------------DPLSLLTD-GNTEVVIDFTHPDVVM 59 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT--------------------CCTHHHHH-TTCCEEEECSCTTTHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC--------------------CCHHHHhc-cCCcEEEEccChHHHH
Confidence 58999997 99999999999888899999999864 36777776 3699999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCEEEEeeecccChhHHHHHHhhcC-CCCccceEEEEEEe
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN-GVQLMDGTMWVHNPRTAQMKEFVSD-PQRFGQLRTMHSCF 162 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~-~~~~~v~~~~r~~p~~~~~k~~i~~-~g~iG~i~~i~~~~ 162 (362)
+.+..|+++|+|+++.++ +.+.++..+|.++|+++ ++.++...|+ +..+..+.++++. ...+.+|..++.+.
T Consensus 60 ~~~~~a~~~g~~~VigTT-G~~~e~~~~l~~aa~~~~~~~vv~a~N~--siGv~ll~~l~~~aa~~~~dieIiE~HH 133 (245)
T 1p9l_A 60 GNLEFLIDNGIHAVVGTT-GFTAERFQQVESWLVAKPNTSVLIAPNF--AIGAVLSMHFAKQAARFFDSAEVIELHH 133 (245)
T ss_dssp HHHHHHHHTTCEEEECCC-CCCHHHHHHHHHHHHTSTTCEEEECSCC--CHHHHHHHHHHHHHGGGCSEEEEEEEEC
T ss_pred HHHHHHHHcCCCEEEcCC-CCCHHHHHHHHHHHHhCCCCCEEEECCc--cHHHHHHHHHHHHHHhhcCCEEEEECcc
Confidence 999999999999999999 68889999999999977 8877766554 3333333333311 12344777777653
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-11 Score=114.31 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=114.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcC------CC---CCCcccCCHHHHhcCCCCcEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANN------FP---PDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~------~~---~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
+||+|||+|.+|..++..+.+.+++ ..+.++|++.+++++++++++ +. -++.-.++++++++..++|+|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 5899999999999999999988765 456689999999999888763 11 0111134566777765699999
Q ss_pred EcCCCcccHHHHHHHHHcCCeEE----EeCCCC--CCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLL----MEKPMA--LNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~----~EKP~~--~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
.++++..|.+++..|+++|+|++ +++|.. .......++.+.++++|+.++.+.. +.|.+..+......+..+
T Consensus 82 n~ag~~~~~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~G--~~PG~~~l~a~~~~~~~~ 159 (405)
T 4ina_A 82 NIALPYQDLTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGSG--FDPGVTNVFCAYAQKHYF 159 (405)
T ss_dssp ECSCGGGHHHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECCB--TTTBHHHHHHHHHHHHTC
T ss_pred ECCCcccChHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcCC--CCccHHHHHHHHHHHhcc
Confidence 99999999999999999999998 566522 2356667899999999999998876 677776544332011247
Q ss_pred cceEEEEEEe
Q 018020 153 GQLRTMHSCF 162 (362)
Q Consensus 153 G~i~~i~~~~ 162 (362)
++|..+.+..
T Consensus 160 ~~i~~i~i~~ 169 (405)
T 4ina_A 160 DEIHEIDILD 169 (405)
T ss_dssp SEEEEEEEEE
T ss_pred CcccEEEEEE
Confidence 8888888744
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.8e-11 Score=106.88 Aligned_cols=100 Identities=18% Similarity=0.318 Sum_probs=82.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||..++..+.+.+ .+ +.++|+++++++.+++++|+ ..++|+++++++ +|+|++++|+..|.
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g-~~-v~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~--~D~Vi~~v~~~~~~ 74 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTP-HE-LIISGSSLERSKEIAEQLAL----PYAMSHQDLIDQ--VDLVILGIKPQLFE 74 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSS-CE-EEEECSSHHHHHHHHHHHTC----CBCSSHHHHHHT--CSEEEECSCGGGHH
T ss_pred ccEEEEECCCHHHHHHHHHHHhCC-Ce-EEEECCCHHHHHHHHHHcCC----EeeCCHHHHHhc--CCEEEEEeCcHhHH
Confidence 579999999999999999998764 44 57999999999999888886 468899999874 99999999987777
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
+++.. ++.|+ +++++|.+.+.++.+++.
T Consensus 75 ~v~~~-l~~~~-~vv~~~~~~~~~~l~~~~ 102 (259)
T 2ahr_A 75 TVLKP-LHFKQ-PIISMAAGISLQRLATFV 102 (259)
T ss_dssp HHHTT-SCCCS-CEEECCTTCCHHHHHHHH
T ss_pred HHHHH-hccCC-EEEEeCCCCCHHHHHHhc
Confidence 76654 45665 899999999987655554
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-10 Score=107.03 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=78.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------------CCCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------------PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~e~l~~~~ 73 (362)
++||||+|+|.+|+.+++.+.++|++++++++|+++......+.+.+.. .+..+..+.++++. +
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~--~ 78 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--E 78 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--T
T ss_pred CeEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhc--C
Confidence 4799999999999999999999999999999998866655555543210 01122246777775 5
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCC
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPM 106 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~ 106 (362)
+|+|+.|||+..|.+++..++++|++|++++|-
T Consensus 79 vDvV~~atp~~~~~~~a~~~l~aG~~VId~sp~ 111 (337)
T 1cf2_P 79 ADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGE 111 (337)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCCEEECTTS
T ss_pred CCEEEECCCchhhHHHHHHHHHcCCEEEEecCC
Confidence 999999999999999999999999999999996
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.9e-10 Score=105.81 Aligned_cols=150 Identities=17% Similarity=0.216 Sum_probs=107.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC---CCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP---DAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+..||+|+|+|.+|+.++..|.+.++++ +.+++|+++++++++++.++.. ++.-.+++.++++ ++|+|+.++|.
T Consensus 22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~-V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~--~~DvVIn~tp~ 98 (467)
T 2axq_A 22 MGKNVLLLGSGFVAQPVIDTLAANDDIN-VTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLA--DNDVVISLIPY 98 (467)
T ss_dssp -CEEEEEECCSTTHHHHHHHHHTSTTEE-EEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHH--TSSEEEECSCG
T ss_pred CCCEEEEECChHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHc--CCCEEEECCch
Confidence 3568999999999999999998887787 5588999999998877644310 0000124445565 59999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhH--HHHHHhhcCCC-Cc-cceEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRT--AQMKEFVSDPQ-RF-GQLRTMH 159 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~--~~~k~~i~~~g-~i-G~i~~i~ 159 (362)
..|..++..|+++|+|++. .+.......++.+.|+++|+.++.+... .|.+ ..+++++ ++. .+ |++..+.
T Consensus 99 ~~~~~v~~a~l~~g~~vvd---~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~--~PG~~~~~a~~li-~q~~~~g~~~~s~~ 172 (467)
T 2axq_A 99 TFHPNVVKSAIRTKTDVVT---SSYISPALRELEPEIVKAGITVMNEIGL--DPGIDHLYAVKTI-DEVHRAGGKLKSFL 172 (467)
T ss_dssp GGHHHHHHHHHHHTCEEEE---CSCCCHHHHHHHHHHHHHTCEEECSCBB--TTBHHHHHHHHHH-HHHHHTTCEEEEEE
T ss_pred hhhHHHHHHHHhcCCEEEE---eecCCHHHHHHHHHHHHcCCEEEecCCc--CccchHHHHHHHH-HHHHhccCcceEEE
Confidence 9899999999999999997 3444456789999999999998877655 4443 3445555 222 22 5677776
Q ss_pred EEeeec
Q 018020 160 SCFSFA 165 (362)
Q Consensus 160 ~~~~~~ 165 (362)
.+....
T Consensus 173 ~wtG~~ 178 (467)
T 2axq_A 173 SYCGGL 178 (467)
T ss_dssp EEEEEE
T ss_pred EEeccc
Confidence 655443
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.8e-10 Score=104.55 Aligned_cols=98 Identities=14% Similarity=0.148 Sum_probs=78.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHH---cCCCCC---------------Cccc--CCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKA---NNFPPD---------------AKVY--GSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~---~~~~~~---------------~~~~--~~~ 65 (362)
++||||+|+|.+|+.+++.+.++|+++|++|.|+ +.+.+..+.+- ++.-++ ..++ .|+
T Consensus 3 ~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~ 82 (335)
T 1u8f_O 3 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 82 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred ceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCH
Confidence 5899999999999999999988999999999996 77776665541 110000 0112 366
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
+++ +.+.++|+|+.|||...|.+.+..++++| |.|++++|
T Consensus 83 ~~l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 83 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred HHCccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC
Confidence 776 44457999999999999999999999999 99999999
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.07 E-value=4.3e-11 Score=111.96 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=101.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++|||+|||+|.+|+..+..|.+. .++. ++|++.++++++.+... +.-++.-.+++.++++ +.|+|+.++|+..
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~-~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~--~~DvVi~~~p~~~ 89 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKDE--FDVY-IGDVNNENLEKVKEFATPLKVDASNFDKLVEVMK--EFELVIGALPGFL 89 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTT--SEEE-EEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHT--TCSEEEECCCGGG
T ss_pred CccEEEEECCCHHHHHHHHHHhcC--CCeE-EEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHh--CCCEEEEecCCcc
Confidence 478999999999999998888654 4443 78899888877644321 0001111223444555 5999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHH--HHHHhhcCCCCccceEEEEEEee
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTA--QMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~--~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
|..+++.|+++|+|++- ++.+.++.++|.+.|+++|+.++.++ -+.|.+. .++.++ + .+ ++..+..++.
T Consensus 90 ~~~v~~~~~~~g~~yvD---~s~~~~~~~~l~~~a~~~g~~~i~~~--G~~PG~~~~~a~~~~-~--~~-~~~~~~~~~g 160 (365)
T 3abi_A 90 GFKSIKAAIKSKVDMVD---VSFMPENPLELRDEAEKAQVTIVFDA--GFAPGLSNILMGRIF-Q--EL-DLKEGYIYVG 160 (365)
T ss_dssp HHHHHHHHHHHTCEEEE---CCCCSSCGGGGHHHHHHTTCEEECCC--BTTTBHHHHHHHHHH-H--HS-CEEEEEEEEE
T ss_pred cchHHHHHHhcCcceEe---eeccchhhhhhhhhhccCCceeeecC--CCCCchHHHHHHHHH-H--hc-cccceeEEec
Confidence 99999999999999875 66677788899999999999988654 4677765 334444 2 22 3455555444
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-10 Score=105.04 Aligned_cols=99 Identities=17% Similarity=0.200 Sum_probs=75.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHH---HHcCCCC-C----------------CcccC--
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFA---KANNFPP-D----------------AKVYG-- 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~---~~~~~~~-~----------------~~~~~-- 63 (362)
++||||+|+|.+|+.+++.+.++|+++|++|.|+ +.+.+..+. ..+|.-+ + ..++.
T Consensus 3 ~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~ 82 (337)
T 3e5r_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIR 82 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCS
T ss_pred ceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecC
Confidence 5899999999999999999999999999999995 555544432 2333111 0 01132
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
|++++ +.+.++|+|+.|||...|.+.+..++++| |+|++++|.
T Consensus 83 dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 83 NPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS 127 (337)
T ss_dssp CGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred ChHHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence 56665 22246999999999999999999999999 579999995
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=100.85 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=74.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-----------------CHHHHhc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-----------------SYEALLD 70 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~e~l~ 70 (362)
++||||+|+|.+|+.+++.+.++|+++|++++|++.+.....+.+.+++ .+. +.+++++
T Consensus 1 ~ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~----~~~~~~~~~~~~~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIR----IYVPQQSIKKFEESGIPVAGTVEDLIK 76 (340)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCC----EECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred CeEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcc----eecCcCHHHHhcccccccccCHhHhhc
Confidence 3799999999999999999999999999999999877777777776653 332 3334443
Q ss_pred CCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEe
Q 018020 71 DKDIDAVYLPLPTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 71 ~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E 103 (362)
++|+|+.|||+..+.+.+..++++|..++.-
T Consensus 77 --~vDvV~~aTp~~~s~~~a~~~~~aG~kvV~~ 107 (340)
T 1b7g_O 77 --TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQ 107 (340)
T ss_dssp --HCSEEEECCSTTHHHHHHHHHHHTTCEEEEC
T ss_pred --CCCEEEECCCCchhHHHHHHHHHcCCeEEEe
Confidence 5999999999999999999999999776653
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=97.78 Aligned_cols=114 Identities=10% Similarity=0.148 Sum_probs=91.8
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+.|++|+|+ |.+|+.+++.+.+. ++++++.+++... .+ +-+|+ .+|.|++++.+..++|++++++|+.
T Consensus 11 ~~~~~v~V~Gasg~~G~~~~~~l~~~-g~~~V~~VnP~~~-g~---~i~G~----~vy~sl~el~~~~~~Dv~ii~vp~~ 81 (294)
T 2yv1_A 11 DENTKAIVQGITGRQGSFHTKKMLEC-GTKIVGGVTPGKG-GQ---NVHGV----PVFDTVKEAVKETDANASVIFVPAP 81 (294)
T ss_dssp CTTCCEEEETTTSHHHHHHHHHHHHT-TCCEEEEECTTCT-TC---EETTE----EEESSHHHHHHHHCCCEEEECCCHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHhC-CCeEEEEeCCCCC-Cc---eECCE----eeeCCHHHHhhcCCCCEEEEccCHH
Confidence 35688999998 99999999999886 7777766665421 01 11454 6899999999844599999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.+.+.+|+++|++.++..+-..+.++.++|.+.|+++|+.+.
T Consensus 82 ~~~~~v~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 125 (294)
T 2yv1_A 82 FAKDAVFEAIDAGIELIVVITEHIPVHDTMEFVNYAEDVGVKII 125 (294)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999999999999955555556788899999999999999655
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=2.3e-09 Score=96.47 Aligned_cols=114 Identities=11% Similarity=0.145 Sum_probs=91.5
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.+.+||+|+|+ |.+|+.+++.+++. ++++++.+++... .+ +.+|+ .+|.|++++.+..++|++++++|+.
T Consensus 5 ~~~~~VaVvGasG~~G~~~~~~l~~~-g~~~v~~VnP~~~-g~---~i~G~----~vy~sl~el~~~~~~Dv~Ii~vp~~ 75 (288)
T 1oi7_A 5 NRETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKG-GM---EVLGV----PVYDTVKEAVAHHEVDASIIFVPAP 75 (288)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCT-TC---EETTE----EEESSHHHHHHHSCCSEEEECCCHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHc-CCeEEEEECCCCC-Cc---eECCE----EeeCCHHHHhhcCCCCEEEEecCHH
Confidence 45789999998 99999999998876 7888877777531 00 12354 6999999998844699999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.+.+.+|+++|.+.++.-.-..+.++.+++.+.++++++.+.
T Consensus 76 ~~~~~~~ea~~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~vi 119 (288)
T 1oi7_A 76 AAADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (288)
T ss_dssp HHHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 99999999999998833333346678889999999999998654
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-09 Score=86.32 Aligned_cols=106 Identities=18% Similarity=0.214 Sum_probs=82.2
Q ss_pred CceeEEEEEec----cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 6 QAAIRFGIIGA----ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 6 ~~~~~v~iiG~----G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.++.+|+|||+ |.+|..+++.+++. +++ +..++++.+ . -.| ..+|.|++|+.+. +|+|++++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~-G~~-V~~vnp~~~---~---i~G----~~~~~s~~el~~~--vDlvii~v 77 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSK-GFE-VLPVNPNYD---E---IEG----LKCYRSVRELPKD--VDVIVFVV 77 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHT-TCE-EEEECTTCS---E---ETT----EECBSSGGGSCTT--CCEEEECS
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHC-CCE-EEEeCCCCC---e---ECC----eeecCCHHHhCCC--CCEEEEEe
Confidence 35789999999 99999999999876 677 333444421 1 134 3689999999874 99999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
|+..+.+++..++++|...++..+-+ .++++.+.++++|+.+.-
T Consensus 78 p~~~v~~v~~~~~~~g~~~i~~~~~~----~~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 78 PPKVGLQVAKEAVEAGFKKLWFQPGA----ESEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEECTTS----CCHHHHHHHHHHTCEEEC
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCcc----HHHHHHHHHHHCCCEEEc
Confidence 99999999999999996656555533 268999999999998763
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=75.72 Aligned_cols=109 Identities=18% Similarity=0.214 Sum_probs=83.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC---CCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP---DAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+++|+|+|+|.+|...+..+.+.+..+++ ++|+++++.+.+. ..++.. +..-.++++++++ ++|+|+.++|..
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~-~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~~~~~ 80 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVT-VADHDLAALAVLN-RMGVATKQVDAKDEAGLAKALG--GFDAVISAAPFF 80 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEE-EEESCHHHHHHHH-TTTCEEEECCTTCHHHHHHHTT--TCSEEEECSCGG
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEE-EEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHHHHc--CCCEEEECCCch
Confidence 57899999999999999999887436754 7889998888765 333210 0011123444554 599999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.+..++..++++|++++. ++.+.+..+++.++.++.
T Consensus 81 ~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~a 116 (118)
T 3ic5_A 81 LTPIIAKAAKAAGAHYFD---LTEDVAATNAVRALVEDS 116 (118)
T ss_dssp GHHHHHHHHHHTTCEEEC---CCSCHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHhCCCEEE---ecCcHHHHHHHHHHHHhh
Confidence 999999999999999885 788999999998887764
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=92.27 Aligned_cols=113 Identities=12% Similarity=0.166 Sum_probs=89.0
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCC-CCcEEEEcCCC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDK-DIDAVYLPLPT 83 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~-~~D~V~i~~~~ 83 (362)
..+.|++|+|+ |.+|+.+++.+++. ++++++.+++... .+ +-+|+ .+|.|++++.+.. ++|++++++|+
T Consensus 11 ~~~~~vvV~Gasg~~G~~~~~~l~~~-g~~~v~~VnP~~~-g~---~i~G~----~vy~sl~el~~~~~~~DvaIi~vp~ 81 (297)
T 2yv2_A 11 DSETRVLVQGITGREGSFHAKAMLEY-GTKVVAGVTPGKG-GS---EVHGV----PVYDSVKEALAEHPEINTSIVFVPA 81 (297)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCT-TC---EETTE----EEESSHHHHHHHCTTCCEEEECCCG
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHhC-CCcEEEEeCCCCC-Cc---eECCE----eeeCCHHHHhhcCCCCCEEEEecCH
Confidence 45789999998 89999999998876 7887777766421 01 11354 6999999998743 39999999999
Q ss_pred cccHHHHHHHHHcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 84 SMHVKWAISVAQKKKH-LLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~-V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
..+.+.+.+|+++|++ +++- .-..+.++.++|.+.|+++++.+.
T Consensus 82 ~~~~~~v~ea~~~Gi~~vVi~-t~G~~~~~~~~l~~~A~~~gi~vi 126 (297)
T 2yv2_A 82 PFAPDAVYEAVDAGIRLVVVI-TEGIPVHDTMRFVNYARQKGATII 126 (297)
T ss_dssp GGHHHHHHHHHHTTCSEEEEC-CCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEE-CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9999999999999988 5542 224477889999999999998655
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-08 Score=90.32 Aligned_cols=111 Identities=9% Similarity=0.179 Sum_probs=84.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+++||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+.++ |+ ..++++++++++ +|+|++++|...|
T Consensus 3 ~~~~i~iiG~G~~G~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~----~~~~~~~~~~~~--~D~vi~~vp~~~~ 73 (301)
T 3cky_A 3 KSIKIGFIGLGAMGKPMAINLLKE-GVTVY-AFDLMEANVAAVVAQ-GA----QACENNQKVAAA--SDIIFTSLPNAGI 73 (301)
T ss_dssp -CCEEEEECCCTTHHHHHHHHHHT-TCEEE-EECSSHHHHHHHHTT-TC----EECSSHHHHHHH--CSEEEECCSSHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHC-CC----eecCCHHHHHhC--CCEEEEECCCHHH
Confidence 368999999999999999998876 57765 899999988887654 43 578899999875 9999999999887
Q ss_pred HHHHHH-------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAIS-------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~~-------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.+.. .++.|+.|+. .- +......++|.+.+.+.++.++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~-~~-~~~~~~~~~l~~~~~~~g~~~~ 120 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVD-MS-SVSPSSTLKMAKVAAEKGIDYV 120 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEE-CC-CCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEE-CC-CCCHHHHHHHHHHHHHcCCeEE
Confidence 665552 3445665554 22 3445677888888877777655
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-08 Score=89.58 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=88.8
Q ss_pred CCccCC-ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 1 MATESQ-AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 1 m~~~~~-~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|+|..+ ..+||+|||+|.||..++..|.+. +++|+ ++|+++++++.+.+. |. ..++|++++++. .|+|++
T Consensus 1 m~m~~~~~~~~IgiIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~----~~~~~~~e~~~~--aDvVi~ 71 (306)
T 3l6d_A 1 MSLSDESFEFDVSVIGLGAMGTIMAQVLLKQ-GKRVA-IWNRSPGKAAALVAA-GA----HLCESVKAALSA--SPATIF 71 (306)
T ss_dssp -CCCCCCCSCSEEEECCSHHHHHHHHHHHHT-TCCEE-EECSSHHHHHHHHHH-TC----EECSSHHHHHHH--SSEEEE
T ss_pred CCCCcccCCCeEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHC-CC----eecCCHHHHHhc--CCEEEE
Confidence 555433 357999999999999999999877 56755 789999999888765 43 578899999986 899999
Q ss_pred cCCCcccHHHHHH-----HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 80 PLPTSMHVKWAIS-----VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 80 ~~~~~~h~~~~~~-----al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
++|+..+.+.+.. .+..|+ ++++. -+.++...+++.+.+++.|+.+..+
T Consensus 72 ~vp~~~~~~~v~~~~~l~~~~~g~-ivid~-st~~~~~~~~l~~~~~~~g~~~vda 125 (306)
T 3l6d_A 72 VLLDNHATHEVLGMPGVARALAHR-TIVDY-TTNAQDEGLALQGLVNQAGGHYVKG 125 (306)
T ss_dssp CCSSHHHHHHHHTSTTHHHHTTTC-EEEEC-CCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred EeCCHHHHHHHhcccchhhccCCC-EEEEC-CCCCHHHHHHHHHHHHHcCCeEEec
Confidence 9998876544332 334454 44543 2567788888888888888776544
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.1e-09 Score=84.32 Aligned_cols=103 Identities=14% Similarity=0.125 Sum_probs=80.7
Q ss_pred eeEEEEEec----cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGA----ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~----G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+.+|+|||+ |.+|..++..+++. +++ |+++++.. + +-.| ..+|.|++|+.+ .+|+|+|++|+
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~-G~~---v~~Vnp~~-~---~i~G----~~~y~sl~~l~~--~vDlvvi~vp~ 87 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEH-GYD---VYPVNPKY-E---EVLG----RKCYPSVLDIPD--KIEVVDLFVKP 87 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHT-TCE---EEEECTTC-S---EETT----EECBSSGGGCSS--CCSEEEECSCH
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHC-CCE---EEEECCCC-C---eECC----eeccCCHHHcCC--CCCEEEEEeCH
Confidence 678999999 68999999999876 677 34444432 1 1134 468999999976 49999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
..+.+++.+|+++|...++-.+-.. .+++.+.++++|+.+.
T Consensus 88 ~~~~~vv~~~~~~gi~~i~~~~g~~----~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 88 KLTMEYVEQAIKKGAKVVWFQYNTY----NREASKKADEAGLIIV 128 (144)
T ss_dssp HHHHHHHHHHHHHTCSEEEECTTCC----CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCCch----HHHHHHHHHHcCCEEE
Confidence 9999999999999966555555333 6889999999999865
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-08 Score=89.00 Aligned_cols=109 Identities=15% Similarity=0.182 Sum_probs=85.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
+||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+.+. |+ ..++|+++++++ .|+|++++|+..+.+
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~----~~~~~~~~~~~~--aDvvi~~vp~~~~~~ 72 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA-GCSVT-IWNRSPEKAEELAAL-GA----ERAATPCEVVES--CPVTFAMLADPAAAE 72 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSGGGGHHHHHT-TC----EECSSHHHHHHH--CSEEEECCSSHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHHC-CC----eecCCHHHHHhc--CCEEEEEcCCHHHHH
Confidence 6899999999999999999877 57766 889999988887664 43 678999999986 899999999765554
Q ss_pred HHH-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 89 WAI-------SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 89 ~~~-------~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+. ..++.|+.|+ .. -+.++...+++.+.+++.|+.+.
T Consensus 73 ~v~~~~~~l~~~l~~~~~vi-~~-st~~~~~~~~~~~~~~~~g~~~~ 117 (287)
T 3pef_A 73 EVCFGKHGVLEGIGEGRGYV-DM-STVDPATSQRIGVAVVAKGGRFL 117 (287)
T ss_dssp HHHHSTTCHHHHCCTTCEEE-EC-SCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHcCcchHhhcCCCCCEEE-eC-CCCCHHHHHHHHHHHHHhCCEEE
Confidence 444 3445666554 44 46688999999999988887654
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.1e-08 Score=88.76 Aligned_cols=114 Identities=11% Similarity=0.155 Sum_probs=86.4
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~ 84 (362)
++++||+|||+|.||..++..|.+. +++|+ ++|+++++++.+.+. |+ ..++|++++++. ..+|+|++++|+.
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~-G~~V~-v~dr~~~~~~~l~~~-g~----~~~~s~~e~~~~a~~~DvVi~~vp~~ 92 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKG-GHECV-VYDLNVNAVQALERE-GI----AGARSIEEFCAKLVKPRVVWLMVPAA 92 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHTT-TC----BCCSSHHHHHHHSCSSCEEEECSCGG
T ss_pred hcCCEEEEECchHHHHHHHHHHHhC-CCEEE-EEeCCHHHHHHHHHC-CC----EEeCCHHHHHhcCCCCCEEEEeCCHH
Confidence 4568999999999999999999887 57755 889999998887653 43 578899999875 3569999999999
Q ss_pred ccHHHHHHHHHcC---CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 85 MHVKWAISVAQKK---KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 85 ~h~~~~~~al~~g---k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.+-+...+... ..++++. -+......+++.+.+++.|+.+.
T Consensus 93 -~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~v 137 (358)
T 4e21_A 93 -VVDSMLQRMTPLLAANDIVIDG-GNSHYQDDIRRADQMRAQGITYV 137 (358)
T ss_dssp -GHHHHHHHHGGGCCTTCEEEEC-SSCCHHHHHHHHHHHHTTTCEEE
T ss_pred -HHHHHHHHHHhhCCCCCEEEeC-CCCChHHHHHHHHHHHHCCCEEE
Confidence 555444444332 2466653 35678889999999988887654
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=6.9e-08 Score=87.42 Aligned_cols=110 Identities=20% Similarity=0.227 Sum_probs=89.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
.|||+||+|.||...+..|.+. +++|+ ++||++++++.+.+. | ....+|+.|+.+. .|+|+++.|+..+.+
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~-G~~v~-v~dr~~~~~~~l~~~-G----a~~a~s~~e~~~~--~dvv~~~l~~~~~v~ 74 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKA-GYLLN-VFDLVQSAVDGLVAA-G----ASAARSARDAVQG--ADVVISMLPASQHVE 74 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSSHHHHHHHHHT-T----CEECSSHHHHHTT--CSEEEECCSCHHHHH
T ss_pred CEEEEeeehHHHHHHHHHHHhC-CCeEE-EEcCCHHHHHHHHHc-C----CEEcCCHHHHHhc--CCceeecCCchHHHH
Confidence 4899999999999999999877 67765 899999999998774 3 3688999999986 999999999988777
Q ss_pred HHHHH-------HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 89 WAISV-------AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 89 ~~~~a-------l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
-+... ++.| .++++-- +.+++.++++.+.++++|+.+..
T Consensus 75 ~V~~~~~g~~~~~~~g-~iiId~s-T~~p~~~~~~a~~~~~~G~~~lD 120 (300)
T 3obb_A 75 GLYLDDDGLLAHIAPG-TLVLECS-TIAPTSARKIHAAARERGLAMLD 120 (300)
T ss_dssp HHHHSSSSSTTSCCC--CEEEECS-CCCHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHhchhhhhhcCCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCEEEe
Confidence 66542 2223 4677644 67899999999999999887654
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.77 E-value=6e-08 Score=88.85 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=86.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+++. |+ ..++|+++++++ .|+|++++|+..+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~-G~~V~-~~dr~~~~~~~l~~~-g~----~~~~~~~e~~~~--aDvVi~~vp~~~~ 100 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEA-GYALQ-VWNRTPARAASLAAL-GA----TIHEQARAAARD--ADIVVSMLENGAV 100 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHTT-TC----EEESSHHHHHTT--CSEEEECCSSHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhC-CCeEE-EEcCCHHHHHHHHHC-CC----EeeCCHHHHHhc--CCEEEEECCCHHH
Confidence 357999999999999999999877 67755 789999998888665 43 678999999986 8999999998766
Q ss_pred HHHHHH------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 87 VKWAIS------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 87 ~~~~~~------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+.+.. .++.|+. ++..- +.++...+++.+.+++.|+.+..
T Consensus 101 ~~~v~~~~~~~~~l~~~~~-vi~~s-t~~~~~~~~~~~~~~~~g~~~~~ 147 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSL-FLDMA-SITPREARDHAARLGALGIAHLD 147 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCE-EEECS-CCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHcchhHHhhCCCCCE-EEecC-CCCHHHHHHHHHHHHHcCCEEEe
Confidence 555542 3344544 44432 56788899999999888876653
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-09 Score=85.61 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=85.9
Q ss_pred eeEEEEEec----cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGA----ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~----G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+.+|+|||+ |.+|..++..+.+. +++ +..+++... .+. -.| ..+|.|++|+.+ ++|+|+|++|+
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~-G~~-v~~vnp~~~-g~~---i~G----~~~~~sl~el~~--~~Dlvii~vp~ 80 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQ-GYH-VIPVSPKVA-GKT---LLG----QQGYATLADVPE--KVDMVDVFRNS 80 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHH-TCC-EEEECSSST-TSE---ETT----EECCSSTTTCSS--CCSEEECCSCS
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHC-CCE-EEEeCCccc-ccc---cCC----eeccCCHHHcCC--CCCEEEEEeCH
Confidence 668999999 78999999998776 566 334455430 011 134 368999999876 49999999999
Q ss_pred cccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE-EeeecccChh
Q 018020 84 SMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM-DGTMWVHNPR 138 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~-v~~~~r~~p~ 138 (362)
..+.+++..++++| +.|+++. -+. .+++.+.++++|+.+. .++....+|.
T Consensus 81 ~~v~~v~~~~~~~g~~~i~i~~-~~~----~~~l~~~a~~~Gi~~igpnc~g~~~~~ 132 (145)
T 2duw_A 81 EAAWGVAQEAIAIGAKTLWLQL-GVI----NEQAAVLAREAGLSVVMDRCPAIELPR 132 (145)
T ss_dssp THHHHHHHHHHHHTCCEEECCT-TCC----CHHHHHHHHTTTCEEECSCCHHHHSTT
T ss_pred HHHHHHHHHHHHcCCCEEEEcC-ChH----HHHHHHHHHHcCCEEEcCCeeeEEccc
Confidence 99999999999999 8899973 222 6889999999999876 4555555553
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.2e-08 Score=93.85 Aligned_cols=97 Identities=13% Similarity=0.187 Sum_probs=74.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----------------CCCcccCCHHHHhcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----------------PDAKVYGSYEALLDD 71 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~e~l~~ 71 (362)
++||||+|+|.+|+.+++.+..+|+++|++++|.+++....+.+..|.. ....+-.+.++++.
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~- 80 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIE- 80 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGG-
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhcc-
Confidence 4899999999999999999988899999999998766655554432211 00011223344443
Q ss_pred CCCcEEEEcCCCcccHHHHH-HHHHcCCeEEEeCCC
Q 018020 72 KDIDAVYLPLPTSMHVKWAI-SVAQKKKHLLMEKPM 106 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h~~~~~-~al~~gk~V~~EKP~ 106 (362)
++|+|+.|||...|.+.+. .++++|++|++.+|.
T Consensus 81 -~vDiV~eatg~~~s~~~a~~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 81 -DADIVVDGAPKKIGKQNLENIYKPHKVKAILQGGE 115 (343)
T ss_dssp -GCSEEEECCCTTHHHHHHHHTTTTTTCEEEECTTS
T ss_pred -CCCEEEECCCccccHHHHHHHHHHCCCEEEECCCc
Confidence 6999999999999999996 999999999999985
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-08 Score=94.18 Aligned_cols=92 Identities=17% Similarity=0.328 Sum_probs=68.8
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---------CCCcccC--CHHHHhcCCCC
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---------PDAKVYG--SYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---------~~~~~~~--~~~e~l~~~~~ 74 (362)
+++||+|+| +|.+|+.+++.+.++|.++|+++++.+....+.+.+.++.. .... +. +.++ ++ ++
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~-~~--~v 78 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLP-IVSTNYED-HK--DV 78 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCB-EECSSGGG-GT--TC
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeE-EeeCCHHH-hc--CC
Confidence 479999999 79999999999999999999999843333333444444310 0111 22 3333 33 69
Q ss_pred cEEEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
|+|+.|+|...|.+++..++++|++|+.
T Consensus 79 DvVf~atp~~~s~~~a~~~~~aG~~VId 106 (350)
T 2ep5_A 79 DVVLSALPNELAESIELELVKNGKIVVS 106 (350)
T ss_dssp SEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHCCCEEEE
Confidence 9999999999999999999999999775
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-08 Score=89.45 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=68.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||..++..+.+. +++++.++|+++++++.+++++|+ ..+++++++++ ++|+|++++|+..+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~-g~~~v~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~--~~Dvvi~av~~~~~~ 82 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRK-GFRIVQVYSRTEESARELAQKVEA----EYTTDLAEVNP--YAKLYIVSLKDSAFA 82 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSHHHHHHHHHHTTC----EEESCGGGSCS--CCSEEEECCCHHHHH
T ss_pred CCeEEEEcCCHHHHHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCC----ceeCCHHHHhc--CCCEEEEecCHHHHH
Confidence 58999999999999999988766 577788999999999999888875 46889999887 499999999999887
Q ss_pred HHHHHHHH
Q 018020 88 KWAISVAQ 95 (362)
Q Consensus 88 ~~~~~al~ 95 (362)
+++....+
T Consensus 83 ~v~~~l~~ 90 (266)
T 3d1l_A 83 ELLQGIVE 90 (266)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 77665443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.6e-09 Score=94.43 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=79.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---CCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---FPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
...+++|||+|.+|..++..+....+.+.+.|+||+++++++++++++ +. +. ++|+++++ + .|+|+++||.
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~--~~-~~~~~e~v-~--aDvVi~aTp~ 197 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGIS--AS-VQPAEEAS-R--CDVLVTTTPS 197 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCC--EE-ECCHHHHT-S--SSEEEECCCC
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCce--EE-ECCHHHHh-C--CCEEEEeeCC
Confidence 357899999999999999998876567778899999999999998864 22 34 88999998 4 9999999998
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHH
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAE 112 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~ 112 (362)
..+. +-...++.|+||+++++...+..+
T Consensus 198 ~~pv-~~~~~l~~G~~V~~ig~~~p~~~e 225 (322)
T 1omo_A 198 RKPV-VKAEWVEEGTHINAIGADGPGKQE 225 (322)
T ss_dssp SSCC-BCGGGCCTTCEEEECSCCSTTCCC
T ss_pred CCce-ecHHHcCCCeEEEECCCCCCCccc
Confidence 6432 123678899999999776665433
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.73 E-value=8e-08 Score=86.27 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=65.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCc---EEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNA---VLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~---~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++||+|||+|.||..++..+.+.. + + +.++|+++++++++++++|+ ..++|..+++++ .|+|++++|+.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g-~~~~~-V~v~dr~~~~~~~l~~~~gi----~~~~~~~~~~~~--aDvVilav~p~ 74 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANG-YDPNR-ICVTNRSLDKLDFFKEKCGV----HTTQDNRQGALN--ADVVVLAVKPH 74 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTT-CCGGG-EEEECSSSHHHHHHHHTTCC----EEESCHHHHHSS--CSEEEECSCGG
T ss_pred CCEEEEEcccHHHHHHHHHHHHCC-CCCCe-EEEEeCCHHHHHHHHHHcCC----EEeCChHHHHhc--CCeEEEEeCHH
Confidence 588999999999999999987763 3 4 45899999999999988886 578899999885 89999999987
Q ss_pred ccHHHHHHHH
Q 018020 85 MHVKWAISVA 94 (362)
Q Consensus 85 ~h~~~~~~al 94 (362)
...+++....
T Consensus 75 ~~~~vl~~l~ 84 (280)
T 3tri_A 75 QIKMVCEELK 84 (280)
T ss_dssp GHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666665543
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.72 E-value=7.1e-08 Score=87.65 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=84.1
Q ss_pred CCccCCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc-cCCHHHHhcCCCCcEEEE
Q 018020 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV-YGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~e~l~~~~~D~V~i 79 (362)
|+++. +++||+|||+|.||..++..|.+. +.+|+ ++|+++++++.+.+. |. .. .+|++++++. .|+|++
T Consensus 1 M~~~~-~~~~I~iIG~G~mG~~~a~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~----~~~~~~~~e~~~~--aDvvi~ 70 (303)
T 3g0o_A 1 MSLTG-TDFHVGIVGLGSMGMGAARSCLRA-GLSTW-GADLNPQACANLLAE-GA----CGAAASAREFAGV--VDALVI 70 (303)
T ss_dssp -------CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHT-TC----SEEESSSTTTTTT--CSEEEE
T ss_pred CCCCC-CCCeEEEECCCHHHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHHc-CC----ccccCCHHHHHhc--CCEEEE
Confidence 54332 368999999999999999999877 67755 789999998888764 43 34 7899998875 899999
Q ss_pred cCCCcccHHHHH-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 80 PLPTSMHVKWAI-------SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 80 ~~~~~~h~~~~~-------~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++|+..+.+.+. ..++.|+ +++..- +..+...+++.+..++.|+.+.
T Consensus 71 ~vp~~~~~~~v~~~~~~l~~~l~~g~-ivv~~s-t~~~~~~~~~~~~~~~~g~~~~ 124 (303)
T 3g0o_A 71 LVVNAAQVRQVLFGEDGVAHLMKPGS-AVMVSS-TISSADAQEIAAALTALNLNML 124 (303)
T ss_dssp CCSSHHHHHHHHC--CCCGGGSCTTC-EEEECS-CCCHHHHHHHHHHHHTTTCEEE
T ss_pred ECCCHHHHHHHHhChhhHHhhCCCCC-EEEecC-CCCHHHHHHHHHHHHHcCCeEE
Confidence 999976655553 2334454 445432 4678888899888888887654
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.5e-08 Score=87.77 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=86.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.+++||+|||+|.||..++..|.+. +.+|+ ++|+++++++.+.+ .|+ ..++|++++++. .|+|++++|...
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-~g~----~~~~~~~~~~~~--aDvvi~~vp~~~ 89 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKN-GFKVT-VWNRTLSKCDELVE-HGA----SVCESPAEVIKK--CKYTIAMLSDPC 89 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSGGGGHHHHH-TTC----EECSSHHHHHHH--CSEEEECCSSHH
T ss_pred ccCCEEEEECccHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHH-CCC----eEcCCHHHHHHh--CCEEEEEcCCHH
Confidence 3468999999999999999999877 56755 78999998888764 453 578999999985 899999999876
Q ss_pred cHHHHH---H----HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 86 HVKWAI---S----VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 86 h~~~~~---~----al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.+.+. . .++.|+ +++..- +.++...+++.+.+++.|+.+.
T Consensus 90 ~~~~v~~~~~~l~~~l~~g~-~vv~~s-t~~~~~~~~~~~~~~~~g~~~v 137 (310)
T 3doj_A 90 AALSVVFDKGGVLEQICEGK-GYIDMS-TVDAETSLKINEAITGKGGRFV 137 (310)
T ss_dssp HHHHHHHSTTCGGGGCCTTC-EEEECS-CCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhCchhhhhccCCCC-EEEECC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 655444 2 233444 555543 6678899999999888887654
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-09 Score=97.13 Aligned_cols=118 Identities=8% Similarity=-0.060 Sum_probs=86.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCC--CcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPD--AKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
...+|+|||+|.+|..++..+....+.+-+.|+|+++++++++++++.-.++ +..++++++++.. .|+|+++||..
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~--aDiVi~aTps~ 205 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG--VDIITTVTADK 205 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT--CSEEEECCCCS
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc--CCEEEEeccCC
Confidence 3568999999999999998876554566778999999999999998731111 3468899999975 89999999997
Q ss_pred ccHHHH-HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 85 MHVKWA-ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 85 ~h~~~~-~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.|.+++ ...++.|+||.+.-....+ .+|+...+.+.+. +++.
T Consensus 206 ~~~pvl~~~~l~~G~~V~~vgs~~p~---~~El~~~~~~~a~-v~vD 248 (350)
T 1x7d_A 206 AYATIITPDMLEPGMHLNAVGGDCPG---KTELHADVLRNAR-VFVE 248 (350)
T ss_dssp SEEEEECGGGCCTTCEEEECSCCBTT---BEEECHHHHHTSE-EEES
T ss_pred CCCceecHHHcCCCCEEEECCCCCCC---ceeeCHHHHhcCc-EEEC
Confidence 554433 3678899999997554433 3444444545554 4444
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-08 Score=87.78 Aligned_cols=108 Identities=19% Similarity=0.261 Sum_probs=83.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+.+. |+ ..++|++++++. .|+|++++|...+.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~~~-g~----~~~~~~~~~~~~--~Dvvi~~vp~~~~~~ 71 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH-GYPLI-IYDVFPDACKEFQDA-GE----QVVSSPADVAEK--ADRIITMLPTSINAI 71 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT-TCCEE-EECSSTHHHHHHHTT-TC----EECSSHHHHHHH--CSEEEECCSSHHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHc-CC----eecCCHHHHHhc--CCEEEEeCCCHHHHH
Confidence 4799999999999999998776 56654 889999888877653 43 577899998875 899999999888766
Q ss_pred HHHHH-------HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 89 WAISV-------AQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 89 ~~~~a-------l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
.+... ++.|+ +++. .-+.+.+..+++.+...+.++.+
T Consensus 72 ~v~~~~~~~~~~l~~~~-~vv~-~s~~~~~~~~~~~~~~~~~g~~~ 115 (296)
T 2gf2_A 72 EAYSGANGILKKVKKGS-LLID-SSTIDPAVSKELAKEVEKMGAVF 115 (296)
T ss_dssp HHHHSTTSGGGTCCTTC-EEEE-CSCCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHhCchhHHhcCCCCC-EEEE-CCCCCHHHHHHHHHHHHHcCCEE
Confidence 65543 23454 6777 77888999999888877766543
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.8e-09 Score=94.36 Aligned_cols=113 Identities=13% Similarity=0.076 Sum_probs=85.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..++|+|||+|.||..++..+.+..+++-+.++|++++++++++++++. .+..+++++++++. .|+|+++||.. +
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~--~~~~~~~~~e~v~~--aDiVi~atp~~-~ 208 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG--EVRVCSSVQEAVAG--ADVIITVTLAT-E 208 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS--CCEECSSHHHHHTT--CSEEEECCCCS-S
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC--CeEEeCCHHHHHhc--CCEEEEEeCCC-C
Confidence 3578999999999999999987664565577999999999999998762 12568899999985 89999999963 2
Q ss_pred HHHHH-HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAI-SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~-~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+++. ..++.|+||++-..... +.+++.+.+.+.+..+.
T Consensus 209 -~v~~~~~l~~g~~vi~~g~~~p---~~~el~~~~~~~g~~~v 247 (312)
T 2i99_A 209 -PILFGEWVKPGAHINAVGASRP---DWRELDDELMKEAVLYV 247 (312)
T ss_dssp -CCBCGGGSCTTCEEEECCCCST---TCCSBCHHHHHHSEEEE
T ss_pred -cccCHHHcCCCcEEEeCCCCCC---CceeccHHHHhcCEEEE
Confidence 2222 56788999988433222 34677777777786444
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.68 E-value=8.6e-09 Score=82.98 Aligned_cols=87 Identities=11% Similarity=0.196 Sum_probs=70.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..||+|||+|.+|..++..+... +++ +.++|+++++++.++++++.. ...++++++++.. .|+|+.+||... .
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~-g~~-v~v~~r~~~~~~~~a~~~~~~--~~~~~~~~~~~~~--~Divi~at~~~~-~ 93 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYP-QYK-VTVAGRNIDHVRAFAEKYEYE--YVLINDIDSLIKN--NDVIITATSSKT-P 93 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTT-TCE-EEEEESCHHHHHHHHHHHTCE--EEECSCHHHHHHT--CSEEEECSCCSS-C
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCE-EEEEcCCHHHHHHHHHHhCCc--eEeecCHHHHhcC--CCEEEEeCCCCC-c
Confidence 46899999999999999988774 788 779999999999999998853 2457899999875 999999999873 3
Q ss_pred HHHHHHHHcCCeEE
Q 018020 88 KWAISVAQKKKHLL 101 (362)
Q Consensus 88 ~~~~~al~~gk~V~ 101 (362)
.+....++.|++|+
T Consensus 94 ~~~~~~l~~g~~vi 107 (144)
T 3oj0_A 94 IVEERSLMPGKLFI 107 (144)
T ss_dssp SBCGGGCCTTCEEE
T ss_pred EeeHHHcCCCCEEE
Confidence 23335667777765
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.8e-07 Score=84.07 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=85.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCC--HHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNA-VLSAVASRS--LEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.++||+|||+|.||..++..|.+. +. + |.++|++ +++.+.+ .+.|+ ..++|++++++. .|+|++++|+
T Consensus 23 ~~~~I~iIG~G~mG~~~A~~L~~~-G~~~-V~~~dr~~~~~~~~~~-~~~g~----~~~~~~~e~~~~--aDvVi~~vp~ 93 (312)
T 3qsg_A 23 NAMKLGFIGFGEAASAIASGLRQA-GAID-MAAYDAASAESWRPRA-EELGV----SCKASVAEVAGE--CDVIFSLVTA 93 (312)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHH-SCCE-EEEECSSCHHHHHHHH-HHTTC----EECSCHHHHHHH--CSEEEECSCT
T ss_pred CCCEEEEECccHHHHHHHHHHHHC-CCCe-EEEEcCCCCHHHHHHH-HHCCC----EEeCCHHHHHhc--CCEEEEecCc
Confidence 468999999999999999999877 56 5 4489997 4555544 45564 578899999885 8999999999
Q ss_pred cccHHHHHHHHHc--CCeEEEeCCCCCCHHHHHHHHHHHHHc--CCEEEE
Q 018020 84 SMHVKWAISVAQK--KKHLLMEKPMALNVAEFDVILNACEEN--GVQLMD 129 (362)
Q Consensus 84 ~~h~~~~~~al~~--gk~V~~EKP~~~~~~~~~~l~~~a~~~--~~~~~v 129 (362)
..+.+.+...+.. ...++++.- +..+...+++.+...+. |+.+..
T Consensus 94 ~~~~~~~~~l~~~l~~~~ivvd~s-t~~~~~~~~~~~~~~~~~~g~~~vd 142 (312)
T 3qsg_A 94 QAALEVAQQAGPHLCEGALYADFT-SCSPAVKRAIGDVISRHRPSAQYAA 142 (312)
T ss_dssp TTHHHHHHHHGGGCCTTCEEEECC-CCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred hhHHHHHHhhHhhcCCCCEEEEcC-CCCHHHHHHHHHHHHhhcCCCeEEe
Confidence 9988877665543 235777654 67888899999888887 776653
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=98.67 E-value=8.8e-08 Score=86.67 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=81.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-|||+||+|.||...+..|.+. +++|+ ++|+++++++.+.+. | ....+|+.|+++. .|+|+++.|+..+.+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~-G~~V~-v~dr~~~~~~~l~~~-G----~~~~~s~~e~~~~--~dvvi~~l~~~~~~~ 76 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA-GYELV-VWNRTASKAEPLTKL-G----ATVVENAIDAITP--GGIVFSVLADDAAVE 76 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EC-------CTTTTT-T----CEECSSGGGGCCT--TCEEEECCSSHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHc-C----CeEeCCHHHHHhc--CCceeeeccchhhHH
Confidence 3799999999999999999887 78866 899999988877543 3 4688999999885 899999999987654
Q ss_pred HH-----HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 89 WA-----ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 89 ~~-----~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.+ ...++.| .++++-- +.+++..+++.+.++++|+.+..+
T Consensus 77 ~v~~~~~~~~~~~~-~iiid~s-T~~p~~~~~~~~~~~~~g~~~lda 121 (297)
T 4gbj_A 77 ELFSMELVEKLGKD-GVHVSMS-TISPETSRQLAQVHEWYGAHYVGA 121 (297)
T ss_dssp HHSCHHHHHHHCTT-CEEEECS-CCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHhhcCCC-eEEEECC-CCChHHHHHHHHHHHhcCCceecC
Confidence 33 2334444 4677654 678999999999999998776644
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-07 Score=84.89 Aligned_cols=110 Identities=11% Similarity=0.172 Sum_probs=84.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
++||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+.+. |+ ..++|++++++ .|+|++++|+..+.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~----~~~~~~~~~~~---aDvvi~~vp~~~~~ 84 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEW-PGGVT-VYDIRIEAMTPLAEA-GA----TLADSVADVAA---ADLIHITVLDDAQV 84 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTS-TTCEE-EECSSTTTSHHHHHT-TC----EECSSHHHHTT---SSEEEECCSSHHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHC-CC----EEcCCHHHHHh---CCEEEEECCChHHH
Confidence 57999999999999999999877 56755 789999988887653 43 57889999987 89999999987665
Q ss_pred HHHHHHHHcC---CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAISVAQKK---KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~~al~~g---k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.+...+... ..+++..- +..+...+++.+..++.|+.+.
T Consensus 85 ~~v~~~l~~~l~~g~ivv~~s-t~~~~~~~~~~~~~~~~g~~~~ 127 (296)
T 3qha_A 85 REVVGELAGHAKPGTVIAIHS-TISDTTAVELARDLKARDIHIV 127 (296)
T ss_dssp HHHHHHHHTTCCTTCEEEECS-CCCHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHHHhcCCCCEEEEeC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 5443433321 24566553 5678888999998888887654
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-08 Score=86.09 Aligned_cols=94 Identities=18% Similarity=0.161 Sum_probs=70.6
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|+++||+|||+|.||..++..+.+. +.+++.++|+++++++++++++|+. ...+..+.++ +.|+|++++|+..
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~-g~~V~~v~~r~~~~~~~l~~~~g~~----~~~~~~~~~~--~aDvVilavp~~~ 93 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAA-QIPAIIANSRGPASLSSVTDRFGAS----VKAVELKDAL--QADVVILAVPYDS 93 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHT-TCCEEEECTTCGGGGHHHHHHHTTT----EEECCHHHHT--TSSEEEEESCGGG
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHhCCC----cccChHHHHh--cCCEEEEeCChHH
Confidence 3468999999999999999999876 6788877999999999999988863 3444455555 4999999999988
Q ss_pred cHHHHHHHHH-cCCeEE-EeCCC
Q 018020 86 HVKWAISVAQ-KKKHLL-MEKPM 106 (362)
Q Consensus 86 h~~~~~~al~-~gk~V~-~EKP~ 106 (362)
+.+++..... .|+.|+ +-+|+
T Consensus 94 ~~~v~~~l~~~~~~ivi~~~~g~ 116 (220)
T 4huj_A 94 IADIVTQVSDWGGQIVVDASNAI 116 (220)
T ss_dssp HHHHHTTCSCCTTCEEEECCCCB
T ss_pred HHHHHHHhhccCCCEEEEcCCCC
Confidence 8877765421 244333 44454
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-08 Score=88.20 Aligned_cols=129 Identities=9% Similarity=0.026 Sum_probs=100.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.|||+++|+|.+|+..++. . +++++++++ +++. +.| +..++|++++++ ++|+|+=|.+...-.
T Consensus 12 ~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~---~k~g----elg----v~a~~d~d~lla--~pD~VVe~A~~~av~ 74 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD---RISK----DIP----GVVRLDEFQVPS--DVSTVVECASPEAVK 74 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH---S-CCSEEEEEC---SSCC----CCS----SSEECSSCCCCT--TCCEEEECSCHHHHH
T ss_pred cceEEEECcCHHHHHHHhc---C-CcEEEEEEe---cccc----ccC----ceeeCCHHHHhh--CCCEEEECCCHHHHH
Confidence 5899999999999988887 3 899999998 3222 223 367899999995 699999999888778
Q ss_pred HHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEE
Q 018020 88 KWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSC 161 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~ 161 (362)
+++.++|++|++|++=-+.+. +.+-.++|.++|++.|..+++..=. .|....+ ... . |.|..+...
T Consensus 75 e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGA--i~GlD~l-~aa-~----g~l~~V~~~ 141 (253)
T 1j5p_A 75 EYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGA--IGGLDVL-SSI-K----DFVKNVRIE 141 (253)
T ss_dssp HHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTT--CCCHHHH-HHH-G----GGEEEEEEE
T ss_pred HHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCc--ccchhHH-HHh-c----CCccEEEEE
Confidence 889999999999998666443 6677799999999999998754333 4445555 333 2 777777765
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-08 Score=86.30 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=78.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHH-HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLE-KATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++.||+|||+|..|...+..+. ...+++++|++|.+++ +... +.-.|+| +...++++++++..++|.+++++|..
T Consensus 83 ~~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~-~~i~Gvp--V~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 83 STTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGK-TTEDGIP--VYGISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp SCEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTC-BCTTCCB--EEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred CCCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCc-eeECCeE--EeCHHHHHHHHHHcCCCEEEEecCch
Confidence 5689999999999999888742 3458999999999986 4432 0113554 23357889999988999999999999
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCCCCCH
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPMALNV 110 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~~~~~ 110 (362)
.+.+++..+.++| +.|+.=.|...++
T Consensus 160 ~aq~v~d~lv~~GIk~I~nFap~~l~v 186 (212)
T 3keo_A 160 EAQEVADILVKAGIKGILSFSPVHLTL 186 (212)
T ss_dssp GHHHHHHHHHHHTCCEEEECSSSCCCC
T ss_pred hHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 9999999999999 6688877776664
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-07 Score=84.02 Aligned_cols=110 Identities=22% Similarity=0.313 Sum_probs=83.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||..++..+.+. +.+| .++|+++++++.+.+. |+ ..+.+++++++. +|+|++++|+..|.
T Consensus 5 ~m~i~iiG~G~~G~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~~-g~----~~~~~~~~~~~~--~D~vi~~v~~~~~~ 75 (299)
T 1vpd_A 5 TMKVGFIGLGIMGKPMSKNLLKA-GYSL-VVSDRNPEAIADVIAA-GA----ETASTAKAIAEQ--CDVIITMLPNSPHV 75 (299)
T ss_dssp -CEEEEECCSTTHHHHHHHHHHT-TCEE-EEECSCHHHHHHHHHT-TC----EECSSHHHHHHH--CSEEEECCSSHHHH
T ss_pred cceEEEECchHHHHHHHHHHHhC-CCEE-EEEeCCHHHHHHHHHC-CC----eecCCHHHHHhC--CCEEEEECCCHHHH
Confidence 37999999999999999998876 5775 5899999988887664 53 578899998875 99999999988776
Q ss_pred HHHH-------HHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAI-------SVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~-------~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.+. ..++.|+. ++..- +......++|.+.+.+.++.+.
T Consensus 76 ~~~~~~~~~l~~~l~~~~~-vv~~s-~~~~~~~~~l~~~~~~~g~~~~ 121 (299)
T 1vpd_A 76 KEVALGENGIIEGAKPGTV-LIDMS-SIAPLASREISDALKAKGVEML 121 (299)
T ss_dssp HHHHHSTTCHHHHCCTTCE-EEECS-CCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHhCcchHhhcCCCCCE-EEECC-CCCHHHHHHHHHHHHHcCCeEE
Confidence 6554 33445654 45543 4455667888888877776654
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=83.44 Aligned_cols=119 Identities=11% Similarity=0.085 Sum_probs=79.7
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|+++||+|||+|.||..++..+.+.. +.+|+ ++|+++++++.+.+ .|+. ...++|+++++++ .|+|++++|+.
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~--aDvVilavp~~ 77 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIV-GYNRSDRSRDIALE-RGIV--DEATADFKVFAAL--ADVIILAVPIK 77 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSSHHHHHHHHH-TTSC--SEEESCTTTTGGG--CSEEEECSCHH
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCcEEE-EEcCCHHHHHHHHH-cCCc--ccccCCHHHhhcC--CCEEEEcCCHH
Confidence 34689999999999999999887653 56654 78999988887654 5531 1356788887764 99999999999
Q ss_pred ccHHHHHHHHHc---CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 85 MHVKWAISVAQK---KKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 85 ~h~~~~~~al~~---gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
.+.+++...... ...+++.. -+......+.+.+...+.+..++.++
T Consensus 78 ~~~~v~~~l~~~~l~~~~ivi~~-~~~~~~~~~~l~~~l~~~~~~~v~~~ 126 (290)
T 3b1f_A 78 KTIDFIKILADLDLKEDVIITDA-GSTKYEIVRAAEYYLKDKPVQFVGSH 126 (290)
T ss_dssp HHHHHHHHHHTSCCCTTCEEECC-CSCHHHHHHHHHHHHTTSSCEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEC-CCCchHHHHHHHHhccccCCEEEEeC
Confidence 987777765443 13455532 12223334555554443355665543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-07 Score=86.16 Aligned_cols=93 Identities=9% Similarity=0.224 Sum_probs=71.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---C------CC-cccCCHHHHhcCCCCcE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---P------DA-KVYGSYEALLDDKDIDA 76 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~------~~-~~~~~~~e~l~~~~~D~ 76 (362)
++|||+|||+|.||..++..|.+. +.+|+ ++|+++++++.+.+..++. . .+ ..++++++++. ++|+
T Consensus 3 ~~mki~iiG~G~~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~ 78 (359)
T 1bg6_A 3 ESKTYAVLGLGNGGHAFAAYLALK-GQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK--DADV 78 (359)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT--TCSE
T ss_pred CcCeEEEECCCHHHHHHHHHHHhC-CCEEE-EEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHh--cCCE
Confidence 468999999999999999988776 56754 7899999999887775321 0 01 25688989886 4999
Q ss_pred EEEcCCCcccHHHHHHH---HHcCCeEEEe
Q 018020 77 VYLPLPTSMHVKWAISV---AQKKKHLLME 103 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~a---l~~gk~V~~E 103 (362)
|++++|+..+.+++... ++.|+.|++.
T Consensus 79 vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 79 ILIVVPAIHHASIAANIASYISEGQLIILN 108 (359)
T ss_dssp EEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence 99999999998887665 3457778777
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=4e-07 Score=87.84 Aligned_cols=116 Identities=12% Similarity=0.195 Sum_probs=85.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
++||+|||+|.||..++..+.+. +++| .++|+++++++.+.++++- .++..+.|++++++. .++|+|++++|+..+
T Consensus 5 ~~~IgvIG~G~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~l~~~~~~-~gi~~~~s~~e~v~~l~~aDvVilavp~~~~ 81 (474)
T 2iz1_A 5 QANFGVVGMAVMGKNLALNVESR-GYTV-AIYNRTTSKTEEVFKEHQD-KNLVFTKTLEEFVGSLEKPRRIMLMVQAGAA 81 (474)
T ss_dssp TBSEEEECCSHHHHHHHHHHHHT-TCCE-EEECSSHHHHHHHHHHTTT-SCEEECSSHHHHHHTBCSSCEEEECCCTTHH
T ss_pred CCcEEEEeeHHHHHHHHHHHHhC-CCEE-EEEcCCHHHHHHHHHhCcC-CCeEEeCCHHHHHhhccCCCEEEEEccCchH
Confidence 57899999999999999999876 5664 5899999999999887620 123578899999874 459999999999876
Q ss_pred HHHHHHHH----HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAISVA----QKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~~al----~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.+...+ +.|+ ++++. .+....+..++.+.+++.|+.+.
T Consensus 82 v~~vl~~l~~~l~~g~-iiId~-s~~~~~~~~~l~~~l~~~g~~~v 125 (474)
T 2iz1_A 82 TDATIKSLLPLLDIGD-ILIDG-GNTHFPDTMRRNAELADSGINFI 125 (474)
T ss_dssp HHHHHHHHGGGCCTTC-EEEEC-SCCCHHHHHHHHHHTTTSSCEEE
T ss_pred HHHHHHHHHhhCCCCC-EEEEC-CCCCHHHHHHHHHHHHHCCCeEE
Confidence 55554433 3455 45542 23455677888887777776654
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.5e-08 Score=88.62 Aligned_cols=112 Identities=8% Similarity=0.003 Sum_probs=88.8
Q ss_pred eeEEEEE-ec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGII-GA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~ii-G~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+-+++|| |+ |.+|..++..+++. ++++++.+++.... + +.+|+ .+|.|++|+.+..++|+++|++|+..
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~-G~~~v~~VnP~~~g-~---~i~G~----~vy~sl~el~~~~~vD~avI~vP~~~ 83 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEY-GTNLVGGTTPGKGG-K---THLGL----PVFNTVKEAKEQTGATASVIYVPPPF 83 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCTT-C---EETTE----EEESSHHHHHHHHCCCEEEECCCHHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHC-CCcEEEEeCCCcCc-c---eECCe----eeechHHHhhhcCCCCEEEEecCHHH
Confidence 3457777 98 99999999998876 68877666665211 0 12354 69999999987446999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCEEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN-GVQLM 128 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~-~~~~~ 128 (362)
+.+.+.+|+++|.+.++.-.-..+.++.+++.+.++++ |+.+.
T Consensus 84 ~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~li 127 (305)
T 2fp4_A 84 AAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 127 (305)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEE
Confidence 99999999999977765555577788888999999999 98854
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.7e-07 Score=82.56 Aligned_cols=98 Identities=6% Similarity=0.113 Sum_probs=70.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCC---cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPN---AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~---~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++||+|||+|.||..++..+.+... .+| .++|+++++++++++++|+ ..++|.++++++ .|+|++++|+.
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V-~~~~r~~~~~~~~~~~~g~----~~~~~~~e~~~~--aDvVilav~~~ 74 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQI-ICSDLNTANLKNASEKYGL----TTTTDNNEVAKN--ADILILSIKPD 74 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGE-EEECSCHHHHHHHHHHHCC----EECSCHHHHHHH--CSEEEECSCTT
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeE-EEEeCCHHHHHHHHHHhCC----EEeCChHHHHHh--CCEEEEEeCHH
Confidence 3689999999999999999877632 154 4899999999999888886 478899999875 89999999887
Q ss_pred ccHHHHHHHH---HcCCeEEEeCCCCCCHHHH
Q 018020 85 MHVKWAISVA---QKKKHLLMEKPMALNVAEF 113 (362)
Q Consensus 85 ~h~~~~~~al---~~gk~V~~EKP~~~~~~~~ 113 (362)
...+++.... +.|+.|+.- --+.+.+..
T Consensus 75 ~~~~v~~~l~~~l~~~~~vvs~-~~gi~~~~l 105 (247)
T 3gt0_A 75 LYASIINEIKEIIKNDAIIVTI-AAGKSIEST 105 (247)
T ss_dssp THHHHC---CCSSCTTCEEEEC-SCCSCHHHH
T ss_pred HHHHHHHHHHhhcCCCCEEEEe-cCCCCHHHH
Confidence 7666664432 234444432 234455443
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=98.57 E-value=9.1e-07 Score=84.99 Aligned_cols=118 Identities=13% Similarity=0.137 Sum_probs=85.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~ 85 (362)
.+++|||||+|.||..++..+.+. +++|+ ++|+++++++.+.++......+..+.|++++++. .++|+|++++|+..
T Consensus 3 ~~~kIgiIGlG~MG~~lA~~L~~~-G~~V~-v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~ 80 (484)
T 4gwg_A 3 AQADIALIGLAVMGQNLILNMNDH-GFVVC-AFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQ 80 (484)
T ss_dssp CCBSEEEECCSHHHHHHHHHHHHT-TCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSH
T ss_pred CCCEEEEEChhHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChH
Confidence 368999999999999999999887 57755 8899999999887753211112346899999874 46999999999975
Q ss_pred cHHHHHHHHH----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 86 HVKWAISVAQ----KKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 86 h~~~~~~al~----~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
..+-+...+. .| .++++.- +....+..++.+.+++.|+.+.
T Consensus 81 ~v~~vl~~l~~~L~~g-~iIId~s-t~~~~~t~~~~~~l~~~Gi~fv 125 (484)
T 4gwg_A 81 AVDDFIEKLVPLLDTG-DIIIDGG-NSEYRDTTRRCRDLKAKGILFV 125 (484)
T ss_dssp HHHHHHHHHGGGCCTT-CEEEECS-CCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhcCCC-CEEEEcC-CCCchHHHHHHHHHHhhccccc
Confidence 5444433332 33 4566532 4567788888888888887654
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-08 Score=79.09 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=86.9
Q ss_pred ceeEEEEEec----cHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGA----ADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
++-+|+|||+ |.+|..++..+++. +++ |+++++.+ .+.+ .| ..+|.|++|+-+ .+|+++|++
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~-G~~---v~~vnp~~~~~~i---~G----~~~~~sl~el~~--~vDlavi~v 78 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQ-GYR---VLPVNPRFQGEEL---FG----EEAVASLLDLKE--PVDILDVFR 78 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHT-TCE---EEEECGGGTTSEE---TT----EECBSSGGGCCS--CCSEEEECS
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHC-CCE---EEEeCCCcccCcC---CC----EEecCCHHHCCC--CCCEEEEEe
Confidence 3568999999 78999999999877 676 55666653 1111 24 468999999876 599999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE-eeecccChh
Q 018020 82 PTSMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLMD-GTMWVHNPR 138 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v-~~~~r~~p~ 138 (362)
|+....+++.+|+++| +.+++..++. .+++.+.|+++|+.+.- ++....+|.
T Consensus 79 p~~~~~~v~~~~~~~gi~~i~~~~g~~-----~~~~~~~a~~~Gir~vgpnc~g~~~~~ 132 (140)
T 1iuk_A 79 PPSALMDHLPEVLALRPGLVWLQSGIR-----HPEFEKALKEAGIPVVADRCLMVEHKR 132 (140)
T ss_dssp CHHHHTTTHHHHHHHCCSCEEECTTCC-----CHHHHHHHHHTTCCEEESCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCcC-----HHHHHHHHHHcCCEEEcCCccceEChh
Confidence 9999999999999999 6788875543 38899999999998764 454445444
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-08 Score=89.61 Aligned_cols=101 Identities=19% Similarity=0.318 Sum_probs=68.0
Q ss_pred CCccCCceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---------CCCccc-CCHHHHh
Q 018020 1 MATESQAAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---------PDAKVY-GSYEALL 69 (362)
Q Consensus 1 m~~~~~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---------~~~~~~-~~~~e~l 69 (362)
|+...+.++||+|+| +|.+|..+++.|.++|+++|+++++......+.+.+.++.- .+..+. .+.++++
T Consensus 1 m~~~~~M~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (354)
T 1ys4_A 1 MSKGEKMKIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEE 80 (354)
T ss_dssp ------CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGG
T ss_pred CCCcccccceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHh
Confidence 543332258999999 79999999999999999999999852222223333333210 001111 2455554
Q ss_pred cCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
+ .++|+|+.|+|...|.+++..++++|++|+.
T Consensus 81 ~-~~~DvV~~atp~~~~~~~a~~~~~aG~~VId 112 (354)
T 1ys4_A 81 F-EDVDIVFSALPSDLAKKFEPEFAKEGKLIFS 112 (354)
T ss_dssp G-TTCCEEEECCCHHHHHHHHHHHHHTTCEEEE
T ss_pred c-CCCCEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 4 2699999999999999999999999999764
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.57 E-value=8e-08 Score=86.82 Aligned_cols=109 Identities=14% Similarity=0.208 Sum_probs=81.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||..++..+.+. +.+|+ ++| ++++++.+.+. |+ ..++++++++++ +|+|++++|...|.
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~-g~~V~-~~~-~~~~~~~~~~~-g~----~~~~~~~~~~~~--~D~vi~~vp~~~~~ 72 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARA-GHQLH-VTT-IGPVADELLSL-GA----VNVETARQVTEF--ADIIFIMVPDTPQV 72 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHT-TCEEE-ECC-SSCCCHHHHTT-TC----BCCSSHHHHHHT--CSEEEECCSSHHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhC-CCEEE-EEc-CHHHHHHHHHc-CC----cccCCHHHHHhc--CCEEEEECCCHHHH
Confidence 47999999999999999998876 67765 788 88777777554 43 568899999875 99999999999886
Q ss_pred HHHHH-------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAIS-------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~~-------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.+.. .++.|+.| +... +.+....++|.+.+.+.++.++
T Consensus 73 ~~v~~~~~~l~~~l~~~~~v-v~~s-~~~~~~~~~l~~~~~~~g~~~~ 118 (295)
T 1yb4_A 73 EDVLFGEHGCAKTSLQGKTI-VDMS-SISPIETKRFAQRVNEMGADYL 118 (295)
T ss_dssp HHHHHSTTSSTTSCCTTEEE-EECS-CCCHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHhCchhHhhcCCCCCEE-EECC-CCCHHHHHHHHHHHHHcCCeEE
Confidence 66654 23445554 4443 3456778888888887776654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.9e-08 Score=87.49 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=84.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH-
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK- 88 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~- 88 (362)
+|+|||+|.+|+.++..+.+. +++ +.++|+++++++.++++++. . +++++++ . +.|+|+++||+..|..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~-g~~-v~v~~r~~~~~~~l~~~~~~----~-~~~~~~~-~--~~Divi~~tp~~~~~~~ 187 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREA-GLE-VWVWNRTPQRALALAEEFGL----R-AVPLEKA-R--EARLLVNATRVGLEDPS 187 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-TCC-EEEECSSHHHHHHHHHHHTC----E-ECCGGGG-G--GCSEEEECSSTTTTCTT
T ss_pred eEEEECCcHHHHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHHhcc----c-hhhHhhc-c--CCCEEEEccCCCCCCCC
Confidence 899999999999999999877 455 56999999999999998874 2 6788887 4 5999999999987742
Q ss_pred ---HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 89 ---WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 89 ---~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
+....++.|++|+ + ++.+..+. ++.+.+++.|+.++.|...
T Consensus 188 ~~~l~~~~l~~g~~vi-D--~~~~p~~t-~l~~~a~~~g~~~v~g~~m 231 (263)
T 2d5c_A 188 ASPLPAELFPEEGAAV-D--LVYRPLWT-RFLREAKAKGLKVQTGLPM 231 (263)
T ss_dssp CCSSCGGGSCSSSEEE-E--SCCSSSSC-HHHHHHHHTTCEEECSHHH
T ss_pred CCCCCHHHcCCCCEEE-E--eecCCccc-HHHHHHHHCcCEEECcHHH
Confidence 2245567777655 5 44444444 5888889999988766443
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.54 E-value=6.4e-07 Score=79.49 Aligned_cols=104 Identities=12% Similarity=0.155 Sum_probs=80.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
|||+|||+|.||..++..|.+. +++|+. +|+ +++.++.+.+. |+ . +|.+++++. .|+|++++|+..+
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~-g~~V~~-~~~~~~~~~~~~~~~~-g~----~--~~~~~~~~~--aDvvi~~v~~~~~ 69 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR-GVEVVT-SLEGRSPSTIERARTV-GV----T--ETSEEDVYS--CPVVISAVTPGVA 69 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-TCEEEE-CCTTCCHHHHHHHHHH-TC----E--ECCHHHHHT--SSEEEECSCGGGH
T ss_pred CeEEEEechHHHHHHHHHHHHC-CCeEEE-eCCccCHHHHHHHHHC-CC----c--CCHHHHHhc--CCEEEEECCCHHH
Confidence 4799999999999999999876 577765 788 77777776553 53 3 678888874 9999999999988
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.+.+...+...++++++. -+.+....++|.+...+.+
T Consensus 70 ~~~~~~~~~~~~~~vi~~-s~~~~~~~~~l~~~~~~~g 106 (264)
T 1i36_A 70 LGAARRAGRHVRGIYVDI-NNISPETVRMASSLIEKGG 106 (264)
T ss_dssp HHHHHHHHTTCCSEEEEC-SCCCHHHHHHHHHHCSSSE
T ss_pred HHHHHHHHHhcCcEEEEc-cCCCHHHHHHHHHHHhhCC
Confidence 888766655444488887 4667778888888776665
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.2e-07 Score=83.64 Aligned_cols=110 Identities=11% Similarity=0.109 Sum_probs=83.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
+||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+.+. |+ ...+|++++++. .|+|++++|+..+.+
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~-G~~V~-~~dr~~~~~~~~~~~-g~----~~~~~~~~~~~~--advvi~~v~~~~~~~ 72 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRA-GFDVT-VWNRNPAKCAPLVAL-GA----RQASSPAEVCAA--CDITIAMLADPAAAR 72 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHH-TCCEE-EECSSGGGGHHHHHH-TC----EECSCHHHHHHH--CSEEEECCSSHHHHH
T ss_pred CeEEEEccCHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHHC-CC----eecCCHHHHHHc--CCEEEEEcCCHHHHH
Confidence 4799999999999999998776 56655 789999988887664 43 578899999985 899999999976554
Q ss_pred HHH---H----HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 89 WAI---S----VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 89 ~~~---~----al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+. . .++.|+ +++..- +.++...+++.+.+++.|+.+..
T Consensus 73 ~v~~~~~~l~~~l~~g~-~vv~~s-t~~~~~~~~~~~~~~~~g~~~~~ 118 (287)
T 3pdu_A 73 EVCFGANGVLEGIGGGR-GYIDMS-TVDDETSTAIGAAVTARGGRFLE 118 (287)
T ss_dssp HHHHSTTCGGGTCCTTC-EEEECS-CCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCchhhhhcccCCC-EEEECC-CCCHHHHHHHHHHHHHcCCEEEE
Confidence 443 2 233444 555543 56788889999988888877553
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.1e-08 Score=89.04 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=67.3
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC--CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP--PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~--~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+++||+|+| +|.+|+.+++.|.++|++++++++++.. ..+++.+.++ +. .. ..+.++++ + .++|+|+.|+|
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~-~g~~~~~~~~~~~g~~~-~~~~~~~~-~--~~vDvV~~a~g 77 (345)
T 2ozp_A 3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRF-AGEPVHFVHPNLRGRTN-LKFVPPEK-L--EPADILVLALP 77 (345)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTT-TTSBGGGTCGGGTTTCC-CBCBCGGG-C--CCCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchh-hCchhHHhCchhcCccc-ccccchhH-h--cCCCEEEEcCC
Confidence 469999999 6999999999999999999999998542 2222222221 00 01 12344544 4 36999999999
Q ss_pred CcccHHHHHHHHHcCCeEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~ 102 (362)
...|.+++..++++|++|+.
T Consensus 78 ~~~s~~~a~~~~~aG~~VId 97 (345)
T 2ozp_A 78 HGVFAREFDRYSALAPVLVD 97 (345)
T ss_dssp TTHHHHTHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999998775
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-07 Score=82.95 Aligned_cols=107 Identities=13% Similarity=0.082 Sum_probs=78.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
+||+|||+|.||..++..+.+ +.+| .++|+++++++.+.+. |+ ..++ +++++. ++|+|++++|+..|.+
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~--g~~V-~~~~~~~~~~~~~~~~-g~----~~~~-~~~~~~--~~D~vi~~v~~~~~~~ 70 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR--RFPT-LVWNRTFEKALRHQEE-FG----SEAV-PLERVA--EARVIFTCLPTTREVY 70 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT--TSCE-EEECSSTHHHHHHHHH-HC----CEEC-CGGGGG--GCSEEEECCSSHHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC--CCeE-EEEeCCHHHHHHHHHC-CC----cccC-HHHHHh--CCCEEEEeCCChHHHH
Confidence 579999999999999999887 6775 4899999988887665 43 3444 677776 4999999999988665
Q ss_pred HHHHHH----HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 89 WAISVA----QKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 89 ~~~~al----~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+...+ +.|+.|+.. -..+....+++.+.+++.++.+.
T Consensus 71 ~v~~~l~~~l~~~~~vv~~--s~~~~~~~~~l~~~~~~~g~~~~ 112 (289)
T 2cvz_A 71 EVAEALYPYLREGTYWVDA--TSGEPEASRRLAERLREKGVTYL 112 (289)
T ss_dssp HHHHHHTTTCCTTEEEEEC--SCCCHHHHHHHHHHHHTTTEEEE
T ss_pred HHHHHHHhhCCCCCEEEEC--CCCCHHHHHHHHHHHHHcCCEEE
Confidence 544333 345555543 23456777888888887776654
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=2.8e-06 Score=81.93 Aligned_cols=118 Identities=15% Similarity=0.187 Sum_probs=84.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~ 84 (362)
|.+.||+|||+|.||..++..|.+. +++|+ ++|+++++++.+.++.+ ..++..+.|++++++. .++|+|++++|+.
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~-G~~V~-v~~r~~~~~~~l~~~~~-~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~ 89 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESR-GYTVS-IFNRSREKTEEVIAENP-GKKLVPYYTVKEFVESLETPRRILLMVKAG 89 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTT-TCCEE-EECSSHHHHHHHHHHST-TSCEEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHhhCC-CCCeEEeCCHHHHHhCCCCCCEEEEECCCH
Confidence 3478999999999999999999876 67754 89999999999888752 0123578899998874 4589999999996
Q ss_pred ccHHHHHHHHH----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 85 MHVKWAISVAQ----KKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 85 ~h~~~~~~al~----~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
...+-+...+. .|+ +++. --........++.+.+++.++.+.
T Consensus 90 ~~v~~vl~~l~~~l~~g~-iIId-~s~g~~~~t~~l~~~l~~~g~~~v 135 (480)
T 2zyd_A 90 AGTDAAIDSLKPYLDKGD-IIID-GGNTFFQDTIRRNRELSAEGFNFI 135 (480)
T ss_dssp SHHHHHHHHHGGGCCTTC-EEEE-CSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhhcCCCC-EEEE-CCCCCHHHHHHHHHHHHHCCCCee
Confidence 55443433332 243 5554 123456677778888877777654
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.7e-07 Score=81.19 Aligned_cols=111 Identities=10% Similarity=0.141 Sum_probs=81.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
++||+|||+|.||..++..+.+. +.+| .++|+++++++.+.+ .|+ ..+.+.++++++ +|+|++++|+..+.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~-g~~V-~~~~~~~~~~~~~~~-~g~----~~~~~~~~~~~~--~DvVi~av~~~~~~ 100 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKM-GHTV-TVWNRTAEKCDLFIQ-EGA----RLGRTPAEVVST--CDITFACVSDPKAA 100 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT-TCCE-EEECSSGGGGHHHHH-TTC----EECSCHHHHHHH--CSEEEECCSSHHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCEE-EEEeCCHHHHHHHHH-cCC----EEcCCHHHHHhc--CCEEEEeCCCHHHH
Confidence 48999999999999999998776 5665 588999988887765 453 567899998874 89999999977666
Q ss_pred HHHHHH-------HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 88 KWAISV-------AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 88 ~~~~~a-------l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+.+... ++.|+.|+. . -+.+....+++.+.+.+.+..+..
T Consensus 101 ~~v~~~~~~~~~~l~~~~~vv~-~-s~~~~~~~~~l~~~~~~~~~~~v~ 147 (316)
T 2uyy_A 101 KDLVLGPSGVLQGIRPGKCYVD-M-STVDADTVTELAQVIVSRGGRFLE 147 (316)
T ss_dssp HHHHHSTTCGGGGCCTTCEEEE-C-SCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHcCchhHhhcCCCCCEEEE-C-CCCCHHHHHHHHHHHHHcCCEEEE
Confidence 555432 345555552 2 235667788888888777766543
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.45 E-value=4.3e-08 Score=87.84 Aligned_cols=77 Identities=16% Similarity=0.202 Sum_probs=57.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||..++..+.+. ++|+.++|+++++++.++++++. .+.|+++++++ +|+|++++|+..+.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~--~~v~~v~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~--~DvVilav~~~~~~ 72 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAEVYGG-----KAATLEKHPEL--NGVVFVIVPDRYIK 72 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHTCC-----CCCSSCCCCC-----CEEECSCTTTHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHc--CcEEEEEeCCHHHHHHHHHHcCC-----ccCCHHHHHhc--CCEEEEeCChHHHH
Confidence 47899999999999999988765 67767899999999999888763 46677777764 89999999999887
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
+++...
T Consensus 73 ~v~~~l 78 (276)
T 2i76_A 73 TVANHL 78 (276)
T ss_dssp HHHTTT
T ss_pred HHHHHh
Confidence 776543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-06 Score=82.53 Aligned_cols=116 Identities=18% Similarity=0.266 Sum_probs=83.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC---CCCCcccCCHHHHhcC-CCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF---PPDAKVYGSYEALLDD-KDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~---~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~ 84 (362)
|||+|||+|.||..++..+.+. +++| .++|+++++++.+.+++|. +.++..+.|++++++. +++|+|++++|+.
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~ 79 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK-GFKV-AVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-TCCE-EEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred CEEEEEChHHHHHHHHHHHHHC-CCEE-EEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCCh
Confidence 5799999999999999999877 5664 5899999999999887662 1113467899998863 3599999999998
Q ss_pred ccHHHHHHHH----HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 85 MHVKWAISVA----QKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 85 ~h~~~~~~al----~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.+.+...+ +.|+ ++++. .........++.+.+++.|+.+.
T Consensus 80 ~~v~~vl~~l~~~l~~g~-iIId~-sng~~~~~~~l~~~l~~~g~~~v 125 (478)
T 1pgj_A 80 AATDSTIEQLKKVFEKGD-ILVDT-GNAHFKDQGRRAQQLEAAGLRFL 125 (478)
T ss_dssp HHHHHHHHHHHHHCCTTC-EEEEC-CCCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHHHHHHhhCCCCC-EEEEC-CCCChHHHHHHHHHHHHCCCeEE
Confidence 6654444333 3454 55542 23455667778887777776543
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.6e-06 Score=81.31 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=82.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-H---cCCCCCCcccCCHHHHhcC-CCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-A---NNFPPDAKVYGSYEALLDD-KDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-~---~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~ 82 (362)
++||+|||+|.||..++..+.+. +++| .++|+++++++.+.+ + .| +..+.|++++++. .++|+|++++|
T Consensus 2 ~m~IgvIG~G~mG~~lA~~La~~-G~~V-~v~dr~~~~~~~l~~~~~~g~g----i~~~~~~~e~v~~l~~aDvVilaVp 75 (482)
T 2pgd_A 2 QADIALIGLAVMGQNLILNMNDH-GFVV-CAFNRTVSKVDDFLANEAKGTK----VLGAHSLEEMVSKLKKPRRIILLVK 75 (482)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-TCCE-EEECSSTHHHHHHHHTTTTTSS----CEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CCeEEEEChHHHHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHhccccCCC----eEEeCCHHHHHhhccCCCEEEEeCC
Confidence 47899999999999999999876 5664 589999999988876 3 33 3578899998852 35999999999
Q ss_pred CcccHHHHHHH----HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAISV----AQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~~a----l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+..+.+.+... ++.|+ ++++. -+....+..++.+.+++.|+.+.
T Consensus 76 ~~~~v~~vl~~l~~~l~~g~-iII~~-s~~~~~~~~~l~~~l~~~g~~~v 123 (482)
T 2pgd_A 76 AGQAVDNFIEKLVPLLDIGD-IIIDG-GNSEYRDTMRRCRDLKDKGILFV 123 (482)
T ss_dssp TTHHHHHHHHHHHHHCCTTC-EEEEC-SCCCHHHHHHHHHHHHHTTCEEE
T ss_pred ChHHHHHHHHHHHhhcCCCC-EEEEC-CCCCHHHHHHHHHHHHHcCCeEe
Confidence 98665444433 33455 55542 23455667778777777776654
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-07 Score=86.62 Aligned_cols=92 Identities=14% Similarity=0.223 Sum_probs=67.2
Q ss_pred CceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC----cccCCHHHHhcCCCCcEEEEc
Q 018020 6 QAAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA----KVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 6 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~----~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|+++||+|+| +|.+|+.+++.|.++|.+++++++++. +..+++...++.-.+. ..+.+ ++.++ ++|+|+.|
T Consensus 14 M~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~-~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~--~vDvVf~a 89 (359)
T 1xyg_A 14 EKDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADR-KAGQSMESVFPHLRAQKLPTLVSVK-DADFS--TVDAVFCC 89 (359)
T ss_dssp -CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCST-TTTSCHHHHCGGGTTSCCCCCBCGG-GCCGG--GCSEEEEC
T ss_pred ccCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCch-hcCCCHHHhCchhcCcccccceecc-hhHhc--CCCEEEEc
Confidence 4579999999 799999999999999999999999864 2333444443310110 11222 34443 69999999
Q ss_pred CCCcccHHHHHHHHHcCCeEEE
Q 018020 81 LPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~ 102 (362)
+|...|.+.+..+ ++|..|+-
T Consensus 90 tp~~~s~~~a~~~-~aG~~VId 110 (359)
T 1xyg_A 90 LPHGTTQEIIKEL-PTALKIVD 110 (359)
T ss_dssp CCTTTHHHHHHTS-CTTCEEEE
T ss_pred CCchhHHHHHHHH-hCCCEEEE
Confidence 9999999999999 99987654
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-06 Score=77.25 Aligned_cols=110 Identities=13% Similarity=0.055 Sum_probs=82.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCC-cEEEEEEcCCH-------HHHHHHHHHcCCCCCCcccC-CHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPN-AVLSAVASRSL-------EKATNFAKANNFPPDAKVYG-SYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~-~~vv~v~d~~~-------~~~~~~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~ 78 (362)
++||+|||+|.||...+..|.+. + .+|+ ++|+++ +..+.+. +.| . ++ |++++++. .|+|+
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~-G~~~V~-~~dr~~~~~~~~~~~~~~~~-~~g----~--~~~s~~e~~~~--aDvVi 92 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGR-NAARLA-AYDLRFNDPAASGALRARAA-ELG----V--EPLDDVAGIAC--ADVVL 92 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT-TCSEEE-EECGGGGCTTTHHHHHHHHH-HTT----C--EEESSGGGGGG--CSEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHc-CCCeEE-EEeCCCccccchHHHHHHHH-HCC----C--CCCCHHHHHhc--CCEEE
Confidence 47999999999999999999877 5 6765 789987 3344333 234 2 66 88888875 89999
Q ss_pred EcCCCcccHHHHHHHHHcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 79 LPLPTSMHVKWAISVAQKK--KHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~g--k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+++|+....+.+...+..- ..+++..- +..+...+++.+..++.|+.+..
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~s-t~~p~~~~~~~~~l~~~g~~~~d 144 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLN-SVGPDTKALAAGAIATGKGSFVE 144 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECC-SCCHHHHHHHHHHHHTSSCEEEE
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECC-CCCHHHHHHHHHHHHHcCCeEEe
Confidence 9999998888776554431 34666654 67888999999988888876643
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.3e-07 Score=80.53 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=57.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||+|||+|.||..++..+.+....+ |.++|+++++++.+++++|+ ..+.++++++ ++|+|++++|+....+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~-v~~~~r~~~~~~~~~~~~g~----~~~~~~~~~~---~~D~vi~~v~~~~~~~ 72 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYR-IYIANRGAEKRERLEKELGV----ETSATLPELH---SDDVLILAVKPQDMEA 72 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCE-EEEECSSHHHHHHHHHHTCC----EEESSCCCCC---TTSEEEECSCHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCe-EEEECCCHHHHHHHHHhcCC----EEeCCHHHHh---cCCEEEEEeCchhHHH
Confidence 57999999999999999887652155 45899999999999888875 4677777776 4999999999443333
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=5e-06 Score=75.73 Aligned_cols=105 Identities=10% Similarity=-0.026 Sum_probs=72.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCc--EEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNA--VLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~--~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~~~ 84 (362)
.+||+|||+|.||..++..+.+. +. +|+ ++|+++++++.+. +.|+. ...++++++ +++. +|+|++++|+.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~-G~~~~V~-~~dr~~~~~~~a~-~~G~~--~~~~~~~~~~~~~~--aDvVilavp~~ 105 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRS-GFKGKIY-GYDINPESISKAV-DLGII--DEGTTSIAKVEDFS--PDFVMLSSPVR 105 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHT-TCCSEEE-EECSCHHHHHHHH-HTTSC--SEEESCTTGGGGGC--CSEEEECSCGG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCCCEEE-EEECCHHHHHHHH-HCCCc--chhcCCHHHHhhcc--CCEEEEeCCHH
Confidence 47999999999999999999877 44 654 7899998877654 45542 135678888 7775 99999999998
Q ss_pred ccHHHHHHHHHc--CCeEEEeCCCCCCHHHHHHHHHHH
Q 018020 85 MHVKWAISVAQK--KKHLLMEKPMALNVAEFDVILNAC 120 (362)
Q Consensus 85 ~h~~~~~~al~~--gk~V~~EKP~~~~~~~~~~l~~~a 120 (362)
...+++...... ...++++-- +......+++.+..
T Consensus 106 ~~~~vl~~l~~~l~~~~iv~d~~-Svk~~~~~~~~~~l 142 (314)
T 3ggo_A 106 TFREIAKKLSYILSEDATVTDQG-SVKGKLVYDLENIL 142 (314)
T ss_dssp GHHHHHHHHHHHSCTTCEEEECC-SCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCcEEEECC-CCcHHHHHHHHHhc
Confidence 877766655442 234666631 22333344454443
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.3e-07 Score=82.98 Aligned_cols=112 Identities=19% Similarity=0.268 Sum_probs=82.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..||+|||+|.+|..++..+.+. +++ +.+++|++++++.+++++++ .++++++++++ +.|+|+++||...+.
T Consensus 129 ~~~v~iiGaG~~g~aia~~L~~~-g~~-V~v~~r~~~~~~~l~~~~g~----~~~~~~~~~~~--~aDiVi~atp~~~~~ 200 (275)
T 2hk9_A 129 EKSILVLGAGGASRAVIYALVKE-GAK-VFLWNRTKEKAIKLAQKFPL----EVVNSPEEVID--KVQVIVNTTSVGLKD 200 (275)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHH-TCE-EEEECSSHHHHHHHTTTSCE----EECSCGGGTGG--GCSEEEECSSTTSST
T ss_pred CCEEEEECchHHHHHHHHHHHHc-CCE-EEEEECCHHHHHHHHHHcCC----eeehhHHhhhc--CCCEEEEeCCCCCCC
Confidence 46899999999999999998876 455 56899999999999888774 45668888876 499999999998764
Q ss_pred H---HH-HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 88 K---WA-ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 88 ~---~~-~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
. .+ ...++.|+.|+ + ++. ...++++.+++.|+.++.|...
T Consensus 201 ~~~~~i~~~~l~~g~~vi-D--v~~---~~t~ll~~a~~~g~~~v~g~~m 244 (275)
T 2hk9_A 201 EDPEIFNYDLIKKDHVVV-D--IIY---KETKLLKKAKEKGAKLLDGLPM 244 (275)
T ss_dssp TCCCSSCGGGCCTTSEEE-E--SSS---SCCHHHHHHHHTTCEEECSHHH
T ss_pred CCCCCCCHHHcCCCCEEE-E--cCC---ChHHHHHHHHHCcCEEECCHHH
Confidence 2 22 23455666544 4 333 3455778888889888776443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-06 Score=80.01 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=74.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC-------------CCCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF-------------PPDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~-------------~~~~~~~~~~~e~l~~~~ 73 (362)
..|||+|||+|.||...+..+.+ +.+|+ ++|+++++.+.+.+...- ..+..+.+|+++.+++
T Consensus 35 ~~mkIaVIGlG~mG~~lA~~La~--G~~V~-~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~-- 109 (432)
T 3pid_A 35 EFMKITISGTGYVGLSNGVLIAQ--NHEVV-ALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN-- 109 (432)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT--TSEEE-EECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT--
T ss_pred CCCEEEEECcCHHHHHHHHHHHc--CCeEE-EEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC--
Confidence 45899999999999999888875 78876 789999998887652100 0123567889888885
Q ss_pred CcEEEEcCCCcccH-------HHHHHH------HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 74 IDAVYLPLPTSMHV-------KWAISV------AQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 74 ~D~V~i~~~~~~h~-------~~~~~a------l~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.|+|++++|+.... ..+..+ ++.|. +++.|- +..+...+++.+...+.+
T Consensus 110 aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~-iVV~~S-Tv~pgtt~~l~~~l~~~~ 171 (432)
T 3pid_A 110 ADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTEINPNA-VMIIKS-TIPVGFTRDIKERLGIDN 171 (432)
T ss_dssp CSEEEECCCCEEETTTTEEECHHHHHHHHHHHHHCTTS-EEEECS-CCCTTHHHHHHHHHTCCC
T ss_pred CCEEEEeCCCccccccccccHHHHHHHHHHHHhcCCCc-EEEEeC-CCChHHHHHHHHHHhhcc
Confidence 99999999997431 122211 44554 445543 455556666666655443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.29 E-value=7e-06 Score=73.32 Aligned_cols=100 Identities=11% Similarity=0.151 Sum_probs=71.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||+|||+|.||..++..+.+. +.+|+ ++|+++++++.+. ++|+. ...+++++++ . ++|+|++++|+..+.+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g~~V~-~~~~~~~~~~~~~-~~g~~--~~~~~~~~~~-~--~~D~vi~av~~~~~~~ 72 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR-GHYLI-GVSRQQSTCEKAV-ERQLV--DEAGQDLSLL-Q--TAKIIFLCTPIQLILP 72 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHH-HTTSC--SEEESCGGGG-T--TCSEEEECSCHHHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHH-hCCCC--ccccCCHHHh-C--CCCEEEEECCHHHHHH
Confidence 4799999999999999998876 56755 6799999888875 56653 1356788888 4 5999999999988777
Q ss_pred HHHHHHH---cCCeEEEeCCCCCCHHHHHHHHH
Q 018020 89 WAISVAQ---KKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 89 ~~~~al~---~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
++..... .|+ +++.- -+.+....+++.+
T Consensus 73 ~~~~l~~~~~~~~-~vv~~-~~~~~~~~~~~~~ 103 (279)
T 2f1k_A 73 TLEKLIPHLSPTA-IVTDV-ASVKTAIAEPASQ 103 (279)
T ss_dssp HHHHHGGGSCTTC-EEEEC-CSCCHHHHHHHHH
T ss_pred HHHHHHhhCCCCC-EEEEC-CCCcHHHHHHHHH
Confidence 7765543 233 45543 3345555554443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=78.14 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=83.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH-HcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK-ANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
.+|+|||+|.||..++..|.+. +++|+ ++|+++++++.+.+ +.. ..++..+.|++++++. .++|+|++++|+...
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~-G~~V~-v~dr~~~~~~~l~~~~~~-~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 87 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH-GFTVC-AYNRTQSKVDHFLANEAK-GKSIIGATSIEDFISKLKRPRKVMLLVKAGAP 87 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-TCCEE-EECSSSHHHHHHHHTTTT-TSSEECCSSHHHHHHTSCSSCEEEECCCSSHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHccccc-CCCeEEeCCHHHHHhcCCCCCEEEEEcCChHH
Confidence 5799999999999999999877 67754 89999999998877 421 0123567899998864 458999999999755
Q ss_pred HHHHHHHHH----cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAISVAQ----KKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~~al~----~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+-+...+. .| .+++.- -+......+++.+.+++.|+.+.
T Consensus 88 v~~vl~~l~~~l~~g-~iIId~-s~~~~~~~~~l~~~l~~~g~~~v 131 (497)
T 2p4q_A 88 VDALINQIVPLLEKG-DIIIDG-GNSHFPDSNRRYEELKKKGILFV 131 (497)
T ss_dssp HHHHHHHHGGGCCTT-CEEEEC-SCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhCCCC-CEEEEC-CCCChhHHHHHHHHHHHcCCcee
Confidence 444444333 23 355552 24566778888888888777654
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.2e-06 Score=82.80 Aligned_cols=77 Identities=12% Similarity=0.234 Sum_probs=56.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCC---------------CCCcccCCHHHHh
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFP---------------PDAKVYGSYEALL 69 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~---------------~~~~~~~~~~e~l 69 (362)
+++|||+|||+|.||..++..|.+. ++.+|+ ++|+++++++.+.+. +.+ .+..+.+|+.+.+
T Consensus 7 ~~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~-~~D~~~~~v~~l~~g-~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~ 84 (481)
T 2o3j_A 7 GKVSKVVCVGAGYVGGPTCAMIAHKCPHITVT-VVDMNTAKIAEWNSD-KLPIYEPGLDEIVFAARGRNLFFSSDIPKAI 84 (481)
T ss_dssp CCCCEEEEECCSTTHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHTSS-SCSSCCTTHHHHHHHHBTTTEEEESCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEECCHHHHHHHHCC-CCCcCCCCHHHHHHHhhcCCEEEECCHHHHh
Confidence 4568999999999999999888765 367866 689999998887542 111 0124556777777
Q ss_pred cCCCCcEEEEcCCCccc
Q 018020 70 DDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h 86 (362)
++ .|+|++++|++.+
T Consensus 85 ~~--aDvvii~Vptp~~ 99 (481)
T 2o3j_A 85 AE--ADLIFISVNTPTK 99 (481)
T ss_dssp HH--CSEEEECCCCCBC
T ss_pred hc--CCEEEEecCCccc
Confidence 64 8999999887653
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=98.26 E-value=7.1e-07 Score=71.24 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=67.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc--cCCHHHHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV--YGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++.++.|||+|..|..++..+++.++++++|++|.+++.... .-.|+ .+ .+++.+++...++|.|+|+.|..
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~--~i~g~----pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKT--TMQGI----TIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTC--EETTE----EEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCC--EecCe----EEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence 467999999999999999999888899999999987643210 01233 23 35666777666799999999876
Q ss_pred cc---HHHHHHHHHcCCeEEE
Q 018020 85 MH---VKWAISVAQKKKHLLM 102 (362)
Q Consensus 85 ~h---~~~~~~al~~gk~V~~ 102 (362)
.+ .+++..+.+.|.+|.+
T Consensus 77 ~~~~~~~i~~~l~~~gv~v~~ 97 (141)
T 3nkl_A 77 SQVQKKVIIESLAKLHVEVLT 97 (141)
T ss_dssp CHHHHHHHHHHHHTTTCEEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEE
Confidence 55 5666777777877764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.8e-06 Score=74.54 Aligned_cols=78 Identities=6% Similarity=0.184 Sum_probs=62.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH--------------HHHHHHHcCCCCCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK--------------ATNFAKANNFPPDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~e~l~~~ 72 (362)
..+||+|||+|.||..++..|.+. +.+|+ ++|+++++ .+.++++++. ..+.|.++++++
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~~-G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~e~~~~- 90 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALADL-GHEVT-IGTRDPKATLARAEPDAMGAPPFSQWLPEHPH----VHLAAFADVAAG- 90 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHTCC-------CCHHHHGGGSTT----CEEEEHHHHHHH-
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCChhhhhhhhhhhhhcchhhhHHHhhcCc----eeccCHHHHHhc-
Confidence 468999999999999999999877 57765 78999987 5555555542 357889999875
Q ss_pred CCcEEEEcCCCcccHHHHHH
Q 018020 73 DIDAVYLPLPTSMHVKWAIS 92 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~ 92 (362)
.|+|++++|+....+.+..
T Consensus 91 -aDvVilavp~~~~~~~~~~ 109 (245)
T 3dtt_A 91 -AELVVNATEGASSIAALTA 109 (245)
T ss_dssp -CSEEEECSCGGGHHHHHHH
T ss_pred -CCEEEEccCcHHHHHHHHH
Confidence 8999999999988777654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.5e-06 Score=79.21 Aligned_cols=73 Identities=8% Similarity=0.128 Sum_probs=57.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC---------------CCCCcccCCHHHHhcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF---------------PPDAKVYGSYEALLDDKD 73 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~---------------~~~~~~~~~~~e~l~~~~ 73 (362)
|||+|||+|.||...+..|.+. +.+|+ ++|+++++.+.+.+.... +......+|+++.+++
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~-G~~V~-~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~-- 78 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL-GANVR-CIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPE-- 78 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGG--
T ss_pred CEEEEECcCHHHHHHHHHHHhc-CCEEE-EEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhc--
Confidence 7999999999999999999877 67866 789999998888762110 1123456888888875
Q ss_pred CcEEEEcCCCcc
Q 018020 74 IDAVYLPLPTSM 85 (362)
Q Consensus 74 ~D~V~i~~~~~~ 85 (362)
.|+|++++|++.
T Consensus 79 aDvViiaVptp~ 90 (450)
T 3gg2_A 79 ADIIFIAVGTPA 90 (450)
T ss_dssp CSEEEECCCCCB
T ss_pred CCEEEEEcCCCc
Confidence 899999999884
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-06 Score=77.76 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=72.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHH---HHcCCC---------------CCCccc--CCHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFA---KANNFP---------------PDAKVY--GSYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~---~~~~~~---------------~~~~~~--~~~~ 66 (362)
++||||+|+|.+|+..++.+.++|+++|+++.|. +.+.+..+. ..+|.- ....++ .+.+
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~ 80 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPE 80 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred CeEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChh
Confidence 3799999999999999999999999999999997 444444443 112200 011222 1444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
++ ..+.++|+|+-|||.....+.+...+++| |.|++.-|..
T Consensus 81 ~i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~ 123 (334)
T 3cmc_O 81 NLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK 123 (334)
T ss_dssp GCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred hcCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCc
Confidence 44 23237999999999999999999999999 6688877743
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=80.31 Aligned_cols=86 Identities=17% Similarity=0.190 Sum_probs=66.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.+||+|||+|.||..++..+++. +++++ ++++++++..+.+.+.|+ .++ +++++++. .|+|++++|+..+.
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~-G~~V~-~~~~~~~~~~~~a~~~G~----~~~-~~~e~~~~--aDvVilavp~~~~~ 86 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDS-GVDVT-VGLRSGSATVAKAEAHGL----KVA-DVKTAVAA--ADVVMILTPDEFQG 86 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-TCCEE-EECCTTCHHHHHHHHTTC----EEE-CHHHHHHT--CSEEEECSCHHHHH
T ss_pred CCEEEEECchHHHHHHHHHHHHC-cCEEE-EEECChHHHHHHHHHCCC----EEc-cHHHHHhc--CCEEEEeCCcHHHH
Confidence 46899999999999999999876 56765 788887665566677775 344 88888875 99999999999988
Q ss_pred HHHH-HH---HHcCCeEEE
Q 018020 88 KWAI-SV---AQKKKHLLM 102 (362)
Q Consensus 88 ~~~~-~a---l~~gk~V~~ 102 (362)
+++. .. ++.|+.|+.
T Consensus 87 ~v~~~~i~~~l~~~~ivi~ 105 (338)
T 1np3_A 87 RLYKEEIEPNLKKGATLAF 105 (338)
T ss_dssp HHHHHHTGGGCCTTCEEEE
T ss_pred HHHHHHHHhhCCCCCEEEE
Confidence 7776 32 334555554
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.9e-06 Score=75.08 Aligned_cols=80 Identities=15% Similarity=0.224 Sum_probs=59.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHH--HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLE--KATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|++|||+|||+|.||..++..|.+.. ..+|+ ++|++++ +++.+. ++|+ .+.++..+++.. .|+|+++
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~-v~~r~~~~~~~~~l~-~~G~----~~~~~~~e~~~~--aDvVila 91 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIM-ASSPDMDLATVSALR-KMGV----KLTPHNKETVQH--SDVLFLA 91 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEE-EECSCTTSHHHHHHH-HHTC----EEESCHHHHHHH--CSEEEEC
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEE-EECCCccHHHHHHHH-HcCC----EEeCChHHHhcc--CCEEEEE
Confidence 45689999999999999999987663 15554 7899875 677664 4564 567788888875 8999999
Q ss_pred CCCcccHHHHHHH
Q 018020 81 LPTSMHVKWAISV 93 (362)
Q Consensus 81 ~~~~~h~~~~~~a 93 (362)
+|+....+++...
T Consensus 92 v~~~~~~~vl~~l 104 (322)
T 2izz_A 92 VKPHIIPFILDEI 104 (322)
T ss_dssp SCGGGHHHHHHHH
T ss_pred eCHHHHHHHHHHH
Confidence 9976555555443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-05 Score=70.49 Aligned_cols=106 Identities=10% Similarity=0.013 Sum_probs=71.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+||+|||+|.||..++..+.+.. ..+|+ ++|+++++++.+ .++|+. ...++|+++++.+ +.|+|++++|+..+.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~-~~d~~~~~~~~~-~~~g~~--~~~~~~~~~~~~~-~aDvVilavp~~~~~ 76 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDINPESISKA-VDLGII--DEGTTSIAKVEDF-SPDFVMLSSPVRTFR 76 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHH-HHTTSC--SEEESCGGGGGGT-CCSEEEECSCHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEE-EEeCCHHHHHHH-HHCCCc--ccccCCHHHHhcC-CCCEEEEcCCHHHHH
Confidence 47999999999999999988763 12655 789999887765 456642 1246788888872 499999999999887
Q ss_pred HHHHHHHH---cCCeEEEeCCCCCCHHHHHHHHHHHH
Q 018020 88 KWAISVAQ---KKKHLLMEKPMALNVAEFDVILNACE 121 (362)
Q Consensus 88 ~~~~~al~---~gk~V~~EKP~~~~~~~~~~l~~~a~ 121 (362)
+++..... .+ .+++..- +......+.+.+...
T Consensus 77 ~v~~~l~~~l~~~-~iv~~~~-~~~~~~~~~l~~~l~ 111 (281)
T 2g5c_A 77 EIAKKLSYILSED-ATVTDQG-SVKGKLVYDLENILG 111 (281)
T ss_dssp HHHHHHHHHSCTT-CEEEECC-SCCTHHHHHHHHHHG
T ss_pred HHHHHHHhhCCCC-cEEEECC-CCcHHHHHHHHHhcc
Confidence 77765433 33 3555421 222333344444443
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.2e-06 Score=78.71 Aligned_cols=101 Identities=15% Similarity=0.082 Sum_probs=69.1
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc-C-CHHHHHHH---HHHcCCCCC---------------CcccC--
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVAS-R-SLEKATNF---AKANNFPPD---------------AKVYG-- 63 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d-~-~~~~~~~~---~~~~~~~~~---------------~~~~~-- 63 (362)
++++||||+|+|.+|+..++.+.++|+++|++|.| . +.+....+ ...+|.-++ ..++.
T Consensus 15 ~~~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 94 (354)
T 3cps_A 15 YFQGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAK 94 (354)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCS
T ss_pred CcceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecC
Confidence 35789999999999999999999999999999999 3 33322221 111221011 01221
Q ss_pred CHHHHh-cCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 64 SYEALL-DDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 64 ~~~e~l-~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+.+++. .+.++|+|+-|||.....+.+...+++| |.|++.-|.
T Consensus 95 dp~~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 95 DPAEIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp CGGGCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred ChHHCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCC
Confidence 444431 1136999999999999999999999999 558887774
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8e-06 Score=76.01 Aligned_cols=80 Identities=9% Similarity=0.123 Sum_probs=59.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---------CCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---------FPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+||+|||+|.||..++..|.+. +.+|. ++|+++++++.+.+... ++.++...+|+++++.. .|+|++
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~-G~~V~-~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aDvVil 91 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK-CREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG--AEIILF 91 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT-EEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT--CSSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC--CCEEEE
Confidence 4999999999999999998765 56654 78999998888876531 11123456788888874 899999
Q ss_pred cCCCcccHHHHHH
Q 018020 80 PLPTSMHVKWAIS 92 (362)
Q Consensus 80 ~~~~~~h~~~~~~ 92 (362)
++|+....+++..
T Consensus 92 av~~~~~~~v~~~ 104 (366)
T 1evy_A 92 VIPTQFLRGFFEK 104 (366)
T ss_dssp CCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHH
Confidence 9998655555433
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=7.1e-06 Score=78.28 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=56.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----------------CCCcccCCHHHHhcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----------------PDAKVYGSYEALLDDK 72 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~e~l~~~ 72 (362)
|||+|||+|.||..++..|.+. +.+|+ ++|+++++.+.+.+.. .+ ......+|+++.+++
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~-G~~V~-~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~- 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR-GHEVI-GVDVSSTKIDLINQGK-SPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD- 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT-
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHhCCC-CCcCCCCHHHHHHhhcccCceEEeCCHHHHhcc-
Confidence 4899999999999999998876 57755 6899999988876521 10 013467788888875
Q ss_pred CCcEEEEcCCCccc
Q 018020 73 DIDAVYLPLPTSMH 86 (362)
Q Consensus 73 ~~D~V~i~~~~~~h 86 (362)
.|+|++++|++.+
T Consensus 77 -aDvviiaVptp~~ 89 (436)
T 1mv8_A 77 -SDVSFICVGTPSK 89 (436)
T ss_dssp -CSEEEECCCCCBC
T ss_pred -CCEEEEEcCCCcc
Confidence 9999999998775
|
| >2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00014 Score=66.17 Aligned_cols=211 Identities=10% Similarity=0.084 Sum_probs=131.4
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEEc--CCHHHHHHHHHHcCCCCCCcccCC-----------------HH
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPN-AVLSAVAS--RSLEKATNFAKANNFPPDAKVYGS-----------------YE 66 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~d--~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 66 (362)
+-||.|+|. |+||..-+..++++|+ ++|+++.- ++.+.+.+.+++|+. ...+..| +.
T Consensus 21 mk~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aLaa~g~nv~~L~~q~~~f~p--~~v~v~d~~~~~~~~~~v~~G~~~l~ 98 (398)
T 2y1e_A 21 RLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHLDTLLRQRAQTGV--TNIAVADEHAAQRVGDIPYHGSDAAT 98 (398)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTTEEEEEEEECSSCHHHHHHHHHHHCC--CCEEESCHHHHHHHCCCSEESTTHHH
T ss_pred ceEEEEEccCcHHHHHHHHHHHhCCCceEEEEEEecCCCHHHHHHHHHHcCC--CEEEEcCHHHhhhcCCEEEecHHHHH
Confidence 357999995 9999999999999986 99999765 788888888888873 2223322 33
Q ss_pred HHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
++...+++|.|+.+..-..-..-...|+++||.|.+--- .+ +....=+.+++++++ .+ .-......+-|+
T Consensus 99 ~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLANK--EsLV~aG~lv~~~a~~~~-il------PVDSEHsAIfQ~ 169 (398)
T 2y1e_A 99 RLVEQTEADVVLNALVGALGLRPTLAALKTGARLALANK--ESLVAGGSLVLRAARPGQ-IV------PVDSEHSALAQC 169 (398)
T ss_dssp HHHHHSCCSEEEECCCSGGGHHHHHHHHHHTCEEEECCH--HHHHHHTHHHHHHCCTTC-EE------ECSHHHHHHHHH
T ss_pred HHhcCCCCCEEEEeCcCHHHHHHHHHHHHCCCceEEccc--chheecHHHHHHHHHHcC-ce------EecchHhHHHHH
Confidence 455556799999999999999999999999999987311 12 233344556667777 22 346666777888
Q ss_pred hcCCCCccceEEEEEEeeecCCccccc--------CccCcCCCCCCC-ccccccc---chHHHH--HHHHccCCCCcEEE
Q 018020 146 VSDPQRFGQLRTMHSCFSFAGDAEFLK--------NDIRVKPDLDGL-GALGDAG---WYGIRS--ILWANDYELPKTVI 211 (362)
Q Consensus 146 i~~~g~iG~i~~i~~~~~~~~~~~~~~--------~~w~~~~~~~gg-g~l~~~g---~h~id~--~~~l~g~~~~~~V~ 211 (362)
+ ..+...+|..+-..-+..+...+.. ..=-.+|.++-| .+-.|.. --.+.+ ..||||. +++++.
T Consensus 170 L-~g~~~~~V~kiiLTASGGPFR~~~~e~L~~vT~eqAl~HPnWsMG~KITIDSATmmNKGLEvIEA~~LF~~-~~d~I~ 247 (398)
T 2y1e_A 170 L-RGGTPDEVAKLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLLFGI-PYDRID 247 (398)
T ss_dssp G-GGSCGGGEEEEEEEECCCTTTTCCHHHHTTCCTTTC-------CCHHHHHHHHHSHHHHHHHHHHHHHHCC-CGGGEE
T ss_pred h-CCCCcccccEEEEECCccccCCCCHHHHhCCCHHHHhhCCCcccCceeeehhHhHhhhhHHHHHHHHHcCC-CHHHeE
Confidence 7 4344456777666554332211100 000001111111 1111110 011222 5899995 467777
Q ss_pred EeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 212 AMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 212 a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
....+ ....+.+++|.||.+
T Consensus 248 VvVHP-------QSiIHSmVef~DGSv 267 (398)
T 2y1e_A 248 VVVHP-------QSIIHSMVTFIDGST 267 (398)
T ss_dssp EEECT-------TCCEEEEEEETTSCE
T ss_pred EEECC-------CCceeEEEEEeCCcE
Confidence 77432 225688999999976
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.3e-06 Score=73.99 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=59.7
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++||+|||+ |.||..++..+.+. +.+|+ ++|+++++++.+.+ +|+. . .+..++++. .|+|++++|+...
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~-g~~V~-~~~r~~~~~~~~~~-~g~~----~-~~~~~~~~~--aDvVi~av~~~~~ 80 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS-AHHLA-AIEIAPEGRDRLQG-MGIP----L-TDGDGWIDE--ADVVVLALPDNII 80 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS-SSEEE-EECCSHHHHHHHHH-TTCC----C-CCSSGGGGT--CSEEEECSCHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHh-cCCC----c-CCHHHHhcC--CCEEEEcCCchHH
Confidence 369999999 99999999999876 57766 89999998888765 6642 2 366777764 9999999999876
Q ss_pred HHHHHHH
Q 018020 87 VKWAISV 93 (362)
Q Consensus 87 ~~~~~~a 93 (362)
.+++...
T Consensus 81 ~~v~~~l 87 (286)
T 3c24_A 81 EKVAEDI 87 (286)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655544
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.8e-06 Score=76.50 Aligned_cols=89 Identities=20% Similarity=0.174 Sum_probs=65.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC--CCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD--KDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~--~~~D~V~i~~~~~~ 85 (362)
..||+|||+|.||..++..+++. +.+|+ ++|+++++++.+ .+.|+ ..++|++++++. .+.|+|++++|+..
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~-G~~V~-~~dr~~~~~~~a-~~~G~----~~~~~~~e~~~~a~~~aDlVilavP~~~ 80 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAA-NHSVF-GYNRSRSGAKSA-VDEGF----DVSADLEATLQRAAAEDALIVLAVPMTA 80 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHT-TCCEE-EECSCHHHHHHH-HHTTC----CEESCHHHHHHHHHHTTCEEEECSCHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHH-HHcCC----eeeCCHHHHHHhcccCCCEEEEeCCHHH
Confidence 46899999999999999999877 56655 789999887765 55665 467899998864 25899999999865
Q ss_pred cHHHHHHHHHcC-CeEEEe
Q 018020 86 HVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~E 103 (362)
-.+++....... ..++++
T Consensus 81 ~~~vl~~l~~~~~~~iv~D 99 (341)
T 3ktd_A 81 IDSLLDAVHTHAPNNGFTD 99 (341)
T ss_dssp HHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHccCCCCEEEE
Confidence 555544333222 235555
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=2.3e-05 Score=71.65 Aligned_cols=100 Identities=20% Similarity=0.137 Sum_probs=71.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcC-CHHHHHHHHH---HcCCCCC---------------Ccc--cCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASR-SLEKATNFAK---ANNFPPD---------------AKV--YGS 64 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~-~~~~~~~~~~---~~~~~~~---------------~~~--~~~ 64 (362)
++||||+|+|.+|+..++.+.++ |++++++|.|+ +++.+..+.+ .+|..++ ..+ ..|
T Consensus 2 ~ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (339)
T 3b1j_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred ceEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCC
Confidence 48999999999999999999888 89999999987 5444443321 1111000 111 234
Q ss_pred HHHHh-cCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 65 YEALL-DDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 65 ~~e~l-~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
++++. .+.++|+|+-||+...-.+.+...+++| |-|++.-|-.
T Consensus 82 p~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~ 126 (339)
T 3b1j_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK 126 (339)
T ss_dssp GGGSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred hHHCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCC
Confidence 55552 3347999999999999999999999999 6677766643
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-05 Score=76.49 Aligned_cols=76 Identities=11% Similarity=0.130 Sum_probs=55.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHc--------------CCCCCCcccCCHHHHhcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKAN--------------NFPPDAKVYGSYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~e~l~~~ 72 (362)
++||+|||+|.||..++..|.+.. +.+|+ ++|+++++.+.+.+.. +...+....+|+++.+++
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~-~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~- 82 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVT-VVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKE- 82 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEE-EECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEE-EEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhc-
Confidence 579999999999999998887653 67765 7899999888753210 000123456788888874
Q ss_pred CCcEEEEcCCCccc
Q 018020 73 DIDAVYLPLPTSMH 86 (362)
Q Consensus 73 ~~D~V~i~~~~~~h 86 (362)
.|+|++++|++.+
T Consensus 83 -aDvViiaVptp~~ 95 (467)
T 2q3e_A 83 -ADLVFISVNTPTK 95 (467)
T ss_dssp -CSEEEECCCCCBC
T ss_pred -CCEEEEEcCCchh
Confidence 8999999887665
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.4e-06 Score=75.51 Aligned_cols=98 Identities=15% Similarity=0.218 Sum_probs=69.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---------CCCCCcccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---------FPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---------~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
.++||+|||+|.||..++..|.+. +.+|. ++++++++++.+.+... ++.+....+|+++.+++ .|+|
T Consensus 28 ~~mkI~VIGaG~mG~alA~~La~~-G~~V~-l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~--aDvV 103 (356)
T 3k96_A 28 FKHPIAILGAGSWGTALALVLARK-GQKVR-LWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG--VTDI 103 (356)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHTT-TCCEE-EECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT--CCEE
T ss_pred cCCeEEEECccHHHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc--CCEE
Confidence 368999999999999999998876 56654 88999999888877531 12223456899998875 8999
Q ss_pred EEcCCCcccHHHHHHHH---HcCCeE-EEeCCCCC
Q 018020 78 YLPLPTSMHVKWAISVA---QKKKHL-LMEKPMAL 108 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al---~~gk~V-~~EKP~~~ 108 (362)
++++|+....+++.... +.+..| .+-|.+..
T Consensus 104 ilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~ 138 (356)
T 3k96_A 104 LIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAK 138 (356)
T ss_dssp EECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBT
T ss_pred EECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCc
Confidence 99999875555554432 234433 35565543
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-06 Score=77.70 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=66.7
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CC---CCCccc-CCHHHHhcCCCCc
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FP---PDAKVY-GSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~---~~~~~~-~~~~e~l~~~~~D 75 (362)
+++|||||| +|..|..+++.|.++|.++|+.+.+++. ..+.+.+.+. ++ .+..+. .+.++ + .++|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~--~~vD 81 (359)
T 4dpl_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M--DDVD 81 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C--TTCC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCCHHH-h--cCCC
Confidence 579999999 5999999999999999999999987643 2333433321 00 011111 12222 3 3699
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
+|+.|+|.....+++..++++|..|+-
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vID 108 (359)
T 4dpl_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVIS 108 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999987663
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.7e-06 Score=77.70 Aligned_cols=92 Identities=14% Similarity=0.265 Sum_probs=66.7
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CC---CCCccc-CCHHHHhcCCCCc
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FP---PDAKVY-GSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~---~~~~~~-~~~~e~l~~~~~D 75 (362)
+++|||||| +|..|..+++.|.++|.++|+.+.+++. ..+.+.+.+. ++ .+..+. .+.++ + .++|
T Consensus 6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~~-~--~~vD 81 (359)
T 4dpk_A 6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTDPKL-M--DDVD 81 (359)
T ss_dssp CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECCGGG-C--TTCC
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCCHHH-h--cCCC
Confidence 579999999 5999999999999999999999987643 2333433321 00 011111 12222 3 3699
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
+|+.|+|.....+++..++++|..|+-
T Consensus 82 vvf~a~p~~~s~~~a~~~~~~G~~vID 108 (359)
T 4dpk_A 82 IIFSPLPQGAAGPVEEQFAKEGFPVIS 108 (359)
T ss_dssp EEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred EEEECCChHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999999987663
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-05 Score=73.03 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHHHcCCC----CCC---------------cccC--CH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAKANNFP----PDA---------------KVYG--SY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~~~~~~----~~~---------------~~~~--~~ 65 (362)
++||||+|+|.+|+..++.+.++|+++|+++.|. +.+....+ .+|... ++. .++. |.
T Consensus 1 ~ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l-~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 79 (330)
T 1gad_O 1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM-LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 79 (330)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHH-HHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHh-hcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCCh
Confidence 3799999999999999999999999999999997 34433322 223211 010 0121 33
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++ ..+.++|+|+-|||.....+.+...+++| |-|.+--|+
T Consensus 80 ~~i~w~~~~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~ 122 (330)
T 1gad_O 80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS 122 (330)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred hhCccccccCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence 443 11136999999999999999999999999 446665554
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.1e-05 Score=76.77 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=76.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC---------------CCCCcccCCHHHHhcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF---------------PPDAKVYGSYEALLDD 71 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~---------------~~~~~~~~~~~e~l~~ 71 (362)
..+||++||+|.||...+..|.+. +.+|+ ++|+++++.+.+.+...- +....+.+|+.+.+++
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~~-G~~V~-~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~ 84 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSDF-GHEVV-CVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKD 84 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTT
T ss_pred CceEEEEEcCCHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhc
Confidence 358999999999999999999877 67766 789999988887653110 1123567889888885
Q ss_pred CCCcEEEEcCCCccc----------HHHHHHHH----HcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 72 KDIDAVYLPLPTSMH----------VKWAISVA----QKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h----------~~~~~~al----~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
.|+|++++|++.. .+-+.+.+ +.| .+++.+- +..+...+++.+..++.
T Consensus 85 --aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g-~iVV~~S-Tv~pgtt~~l~~~l~e~ 146 (446)
T 4a7p_A 85 --ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKP-SVIVTKS-TVPVGTGDEVERIIAEV 146 (446)
T ss_dssp --CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSC-CEEEECS-CCCTTHHHHHHHHHHHH
T ss_pred --CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCC-CEEEEeC-CCCchHHHHHHHHHHHh
Confidence 8999999776642 23332222 234 3555554 56667777777766654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-05 Score=68.02 Aligned_cols=81 Identities=9% Similarity=0.102 Sum_probs=60.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc------------CCCC--------CCcccCCHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN------------NFPP--------DAKVYGSYEA 67 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~------------~~~~--------~~~~~~~~~e 67 (362)
..||+|||+|.||...+..+... +++|+ ++|+++++++++.+.. ++.. .....+|+++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~-G~~V~-l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~ 81 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH-GFAVT-AYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQ 81 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHH
Confidence 56899999999999999998877 67765 7899999887765541 1110 1245788888
Q ss_pred HhcCCCCcEEEEcCCCc--ccHHHHHH
Q 018020 68 LLDDKDIDAVYLPLPTS--MHVKWAIS 92 (362)
Q Consensus 68 ~l~~~~~D~V~i~~~~~--~h~~~~~~ 92 (362)
.+++ +|+|+.++|.. ....+...
T Consensus 82 ~~~~--aDlVi~av~~~~~~~~~v~~~ 106 (283)
T 4e12_A 82 AVKD--ADLVIEAVPESLDLKRDIYTK 106 (283)
T ss_dssp HTTT--CSEEEECCCSCHHHHHHHHHH
T ss_pred Hhcc--CCEEEEeccCcHHHHHHHHHH
Confidence 8875 99999999987 44444443
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=3e-05 Score=74.68 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=71.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc------CC---------CCCCcccCCHHHHhcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN------NF---------PPDAKVYGSYEALLDD 71 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~------~~---------~~~~~~~~~~~e~l~~ 71 (362)
..|||+|||+|.||...+..|.+. +.+|+ ++|+++++.+.+.+.. ++ +....+.+|+++.+++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~-G~~V~-~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~ 84 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI-GHDVF-CLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH 84 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhc
Confidence 368999999999999999998876 67755 7899999988876542 10 0113456777777764
Q ss_pred CCCcEEEEcCCCc----------ccHHHHHHHH---HcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 018020 72 KDIDAVYLPLPTS----------MHVKWAISVA---QKKKHLLMEKPMALNVAEFDVILNACE 121 (362)
Q Consensus 72 ~~~D~V~i~~~~~----------~h~~~~~~al---~~gk~V~~EKP~~~~~~~~~~l~~~a~ 121 (362)
.|+|++++|++ .....+.... +.| .+++.|- +..+...+++.+...
T Consensus 85 --aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~-~iVV~~S-Tv~~gt~~~l~~~l~ 143 (478)
T 2y0c_A 85 --GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGF-KVIVDKS-TVPVGTAERVRAAVA 143 (478)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSC-EEEEECS-CCCTTHHHHHHHHHH
T ss_pred --CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCC-CEEEEeC-CcCCCchHHHHHHHH
Confidence 89999999884 2233333222 223 4556664 544555555555443
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.3e-06 Score=74.70 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=71.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhc---CCCcEEEEEEcC-CHHHHHHHHH---HcCCCC---------------CCccc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITL---APNAVLSAVASR-SLEKATNFAK---ANNFPP---------------DAKVY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~---~~~~~vv~v~d~-~~~~~~~~~~---~~~~~~---------------~~~~~--~ 63 (362)
++||||+|+|.+|+..++.+.+ +|+++|++|.|. +++.+..+.+ .+|.-+ ...++ .
T Consensus 2 ~ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~ 81 (339)
T 2x5j_O 2 TVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHER 81 (339)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecC
Confidence 4899999999999999999988 899999999996 5554444332 111100 01122 2
Q ss_pred CHHHHh-cCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 64 SYEALL-DDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 64 ~~~e~l-~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
|++++. .+.++|+|+-|||.....+.+...+++| |.|++.-|-
T Consensus 82 dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a 126 (339)
T 2x5j_O 82 SLQSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG 126 (339)
T ss_dssp SGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred ChHHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence 344431 2126999999999999999999999999 568888775
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.05 E-value=2e-05 Score=62.16 Aligned_cols=120 Identities=12% Similarity=0.074 Sum_probs=74.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc---cCCHHHHhc--CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV---YGSYEALLD--DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~e~l~--~~~~D~V~i~~~ 82 (362)
.|+|+|+|+|.+|..++..|.+. +.+++ ++|+++++.+.+.+++++. .+ ..+.+.+.+ ..++|+|++++|
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~-g~~v~-~~d~~~~~~~~~~~~~~~~---~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEK-GHDIV-LIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHhcCcE---EEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 57999999999999999999876 57765 6789999888887776642 12 224444322 246999999999
Q ss_pred CcccHHHHHHHH-HcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 83 TSMHVKWAISVA-QKK-KHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 83 ~~~h~~~~~~al-~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
+......+..++ +.+ +++++. +.+....+ ..++.|... -++|.......+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ii~~---~~~~~~~~----~l~~~g~~~------v~~p~~~~~~~~ 130 (140)
T 1lss_A 79 KEEVNLMSSLLAKSYGINKTIAR---ISEIEYKD----VFERLGVDV------VVSPELIAANYI 130 (140)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEE---CSSTTHHH----HHHHTTCSE------EECHHHHHHHHH
T ss_pred CchHHHHHHHHHHHcCCCEEEEE---ecCHhHHH----HHHHcCCCE------EECHHHHHHHHH
Confidence 875544444433 334 456653 23333322 334566533 246665544443
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.03 E-value=7.7e-06 Score=72.33 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=60.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCC---cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPN---AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~---~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++||+|||+|.||..++..+.+... .+| .++|+++++ +|+ ...++.+++++. .|+|++++|+.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v-~~~~~~~~~-------~g~----~~~~~~~~~~~~--~D~vi~~v~~~ 69 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENL-FYYGPSKKN-------TTL----NYMSSNEELARH--CDIIVCAVKPD 69 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGE-EEECSSCCS-------SSS----EECSCHHHHHHH--CSEEEECSCTT
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeE-EEEeCCccc-------Cce----EEeCCHHHHHhc--CCEEEEEeCHH
Confidence 5799999999999999988876531 454 578998765 454 567889888874 99999999987
Q ss_pred ccHHHHHHHHH--cCCeEEEe
Q 018020 85 MHVKWAISVAQ--KKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~--~gk~V~~E 103 (362)
...+++..... .++.|++.
T Consensus 70 ~~~~v~~~l~~~l~~~~vv~~ 90 (262)
T 2rcy_A 70 IAGSVLNNIKPYLSSKLLISI 90 (262)
T ss_dssp THHHHHHHSGGGCTTCEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEE
Confidence 77666655432 24445543
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=8.5e-06 Score=69.96 Aligned_cols=69 Identities=19% Similarity=0.298 Sum_probs=53.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.++||+|||+|.||..++..+.+. +.+++ ++|+++++++.+.+. |+ ... +++++++ ++|+|++++|+..
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~-g~~V~-~~~r~~~~~~~~~~~-g~----~~~-~~~~~~~--~~DvVi~av~~~~ 95 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGS-GFKVV-VGSRNPKRTARLFPS-AA----QVT-FQEEAVS--SPEVIFVAVFREH 95 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHT-TCCEE-EEESSHHHHHHHSBT-TS----EEE-EHHHHTT--SCSEEEECSCGGG
T ss_pred CCCEEEEEccCHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHc-CC----cee-cHHHHHh--CCCEEEECCChHH
Confidence 458999999999999999998876 56655 689999887776443 43 333 7888876 4999999999754
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.2e-06 Score=79.69 Aligned_cols=112 Identities=8% Similarity=0.049 Sum_probs=74.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----cCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----NNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+++|||+|.+|..++..+.....++-+.|+||+ ++++++++ +|++ +..+ |+++++.. .|+|+.+||.
T Consensus 121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~--~~~~-~~~eav~~--aDIVi~aT~s 193 (313)
T 3hdj_A 121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVP--ARMA-APADIAAQ--ADIVVTATRS 193 (313)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSC--EEEC-CHHHHHHH--CSEEEECCCC
T ss_pred CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCe--EEEe-CHHHHHhh--CCEEEEccCC
Confidence 46899999999999999998765346667799999 66666554 5653 2345 99999985 9999999998
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.. .-+-...++.|.||.. ++.+..+.+|+-...-+....+++.
T Consensus 194 ~~-pvl~~~~l~~G~~V~~---vGs~~p~~~El~~~~~~~a~~v~vD 236 (313)
T 3hdj_A 194 TT-PLFAGQALRAGAFVGA---IGSSLPHTRELDDEALRRARAVVVE 236 (313)
T ss_dssp SS-CSSCGGGCCTTCEEEE---CCCSSTTCCCCCHHHHHHCSEEEES
T ss_pred CC-cccCHHHcCCCcEEEE---CCCCCCchhhcCHHHHhcCCEEEEC
Confidence 53 1111345788999986 3333222344443333334345554
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.2e-05 Score=73.39 Aligned_cols=98 Identities=20% Similarity=0.205 Sum_probs=69.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcC-CHHHHHHHH---HHcCCCC---------------CCccc--CCH
Q 018020 9 IRFGIIGAADIARKLSRAITLA--PNAVLSAVASR-SLEKATNFA---KANNFPP---------------DAKVY--GSY 65 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~-~~~~~~~~~---~~~~~~~---------------~~~~~--~~~ 65 (362)
+||||+|+|.+|+..++.+.++ |+++|++|.|. +.+.+..+. ..+|.-+ ...++ .+.
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 5899999999999999999888 99999999996 444443332 1122100 01122 134
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++ ..+.++|+|+-|||.....+.+...+++| |.|++.-|.
T Consensus 81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a 123 (332)
T 1hdg_O 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPA 123 (332)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred HHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCC
Confidence 443 22226999999999999999999999999 558877664
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.3e-06 Score=80.17 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=54.6
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHH----HHHHHHHHcC-C----------------CCCCcccC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLE----KATNFAKANN-F----------------PPDAKVYG 63 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~----~~~~~~~~~~-~----------------~~~~~~~~ 63 (362)
+..+||+|||+|.||...+..+.+.|+. +|+ ++|++++ +.+.+.+... + +....+.+
T Consensus 16 ~~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~-~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~tt 94 (478)
T 3g79_A 16 GPIKKIGVLGMGYVGIPAAVLFADAPCFEKVL-GFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTP 94 (478)
T ss_dssp CSCCEEEEECCSTTHHHHHHHHHHSTTCCEEE-EECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEES
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHhCCCCeEE-EEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeC
Confidence 3468999999999999999998877677 866 7899998 8877754211 0 01123345
Q ss_pred CHHHHhcCCCCcEEEEcCCCcc
Q 018020 64 SYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 64 ~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+ .+.+++ .|+|++++|++.
T Consensus 95 d-~ea~~~--aDvViiaVptp~ 113 (478)
T 3g79_A 95 D-FSRISE--LDAVTLAIQTPF 113 (478)
T ss_dssp C-GGGGGG--CSEEEECCCCCC
T ss_pred c-HHHHhc--CCEEEEecCCch
Confidence 5 455554 899999988874
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4e-05 Score=70.84 Aligned_cols=100 Identities=20% Similarity=0.130 Sum_probs=70.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcC-CHHHHHHHHHH---cCCCCC---------------Ccc--cCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASR-SLEKATNFAKA---NNFPPD---------------AKV--YGS 64 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~-~~~~~~~~~~~---~~~~~~---------------~~~--~~~ 64 (362)
++||||+|+|.+|+..++.+..+ |+++|++|.|. +.+.+..+.+- +|..++ ..+ ..|
T Consensus 2 ~ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~d 81 (380)
T 2d2i_A 2 TIRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRN 81 (380)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSC
T ss_pred CcEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCC
Confidence 48999999999999999998888 89999999997 55544333211 111000 011 124
Q ss_pred HHHHh-cCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 65 YEALL-DDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 65 ~~e~l-~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
++++. .+.++|+|+-||+...-.+.+...+++| |.|++.-|-.
T Consensus 82 p~~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~ 126 (380)
T 2d2i_A 82 PLNLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK 126 (380)
T ss_dssp GGGCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred hHHCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCC
Confidence 44442 1126999999999999999999999999 6677776643
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.96 E-value=2.8e-06 Score=74.73 Aligned_cols=112 Identities=13% Similarity=0.169 Sum_probs=79.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH--
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV-- 87 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~-- 87 (362)
+++|||+|.+|+..+..|.+. +++-+.|++|+++++++++++++. ..++++.+.+.. .|+|+.+||...+.
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~-G~~~I~v~nR~~~ka~~la~~~~~----~~~~~~~~~~~~--aDiVInatp~gm~p~~ 182 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQM-GVKDIWVVNRTIERAKALDFPVKI----FSLDQLDEVVKK--AKSLFNTTSVGMKGEE 182 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-TCCCEEEEESCHHHHHTCCSSCEE----EEGGGHHHHHHT--CSEEEECSSTTTTSCC
T ss_pred eEEEECcHHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHccc----CCHHHHHhhhcC--CCEEEECCCCCCCCCC
Confidence 899999999999999988876 553355899999999988877652 246777777775 99999999865432
Q ss_pred -HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecc
Q 018020 88 -KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDGTMWV 134 (362)
Q Consensus 88 -~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~~~~r 134 (362)
++-...++.+. ++++ +..+ -..+++.+++.|+. ++-|....
T Consensus 183 ~~i~~~~l~~~~-~V~D--ivy~---~T~ll~~A~~~G~~~~~~Gl~ML 225 (253)
T 3u62_A 183 LPVSDDSLKNLS-LVYD--VIYF---DTPLVVKARKLGVKHIIKGNLMF 225 (253)
T ss_dssp CSCCHHHHTTCS-EEEE--CSSS---CCHHHHHHHHHTCSEEECTHHHH
T ss_pred CCCCHHHhCcCC-EEEE--eeCC---CcHHHHHHHHCCCcEEECCHHHH
Confidence 22234455554 4444 4445 35677788888887 66664443
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-05 Score=72.95 Aligned_cols=94 Identities=13% Similarity=0.189 Sum_probs=64.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-CC----CCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-PP----DAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~~----~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
++||+|||+|.||..++..|.+. +.+|. ++++++++++.+.++.- . .+ ++.+++|.++ +. +.|+|++++
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~-G~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~--~aDvVil~v 88 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHEN-GEEVI-LWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IK--KEDILVIAI 88 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CC--TTEEEEECS
T ss_pred CCcEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hc--CCCEEEEEC
Confidence 68999999999999999988766 56654 88999999998877631 0 00 1356778888 65 489999999
Q ss_pred CCcccHHHHHHHHH-cCCeEE-EeCCCC
Q 018020 82 PTSMHVKWAISVAQ-KKKHLL-MEKPMA 107 (362)
Q Consensus 82 ~~~~h~~~~~~al~-~gk~V~-~EKP~~ 107 (362)
|+....+++. .+. .|+.|+ +-|.+.
T Consensus 89 k~~~~~~v~~-~l~~~~~~vv~~~nGi~ 115 (335)
T 1z82_A 89 PVQYIREHLL-RLPVKPSMVLNLSKGIE 115 (335)
T ss_dssp CGGGHHHHHT-TCSSCCSEEEECCCCCC
T ss_pred CHHHHHHHHH-HhCcCCCEEEEEeCCCC
Confidence 9744444332 232 454443 444443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.94 E-value=5.5e-06 Score=74.81 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=78.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-CCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-DAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+|+|||+|.+|+..+..|.+. ++.-+.|++|+++++++++++++... .+..++++.+.+. +.|+|+.+||...+
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~-G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~--~aDivIn~t~~~~~ 217 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLST-AAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLA--EYDIIINTTSVGMH 217 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGG--GCSEEEECSCTTCS
T ss_pred CCEEEEECcHHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhc--cCCEEEECCCCCCC
Confidence 45899999999999999999877 56234489999999999999886310 1111234444444 59999999998765
Q ss_pred HH-----HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 87 VK-----WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 87 ~~-----~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
.. +-...++.|.. +++ +..++.+. ++++.+++.|..+..|..
T Consensus 218 ~~~~~~~i~~~~l~~~~~-v~D--~~y~P~~T-~ll~~A~~~G~~~v~Gl~ 264 (297)
T 2egg_A 218 PRVEVQPLSLERLRPGVI-VSD--IIYNPLET-KWLKEAKARGARVQNGVG 264 (297)
T ss_dssp SCCSCCSSCCTTCCTTCE-EEE--CCCSSSSC-HHHHHHHHTTCEEECSHH
T ss_pred CCCCCCCCCHHHcCCCCE-EEE--cCCCCCCC-HHHHHHHHCcCEEECCHH
Confidence 31 12234555544 444 33443333 377889999988776643
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-05 Score=67.28 Aligned_cols=79 Identities=19% Similarity=0.198 Sum_probs=59.2
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--C-CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--P-PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~-~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||+||| +|.||..++..+.+. +.+++ ++|+++++.+.+.++++. + .+.. .++++++++. +|+|++++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~-g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~D~Vi~~~~~~ 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL-GHEIV-VGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEA--CDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-TCEEE-EEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHH--CSEEEECSCHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhc--CCEEEEeCChh
Confidence 4799999 999999999998876 57765 689999888877765430 0 0112 4678888864 99999999987
Q ss_pred ccHHHHHH
Q 018020 85 MHVKWAIS 92 (362)
Q Consensus 85 ~h~~~~~~ 92 (362)
.+.+++..
T Consensus 76 ~~~~~~~~ 83 (212)
T 1jay_A 76 HAIDTARD 83 (212)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 76666543
|
| >3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00072 Score=62.73 Aligned_cols=214 Identities=11% Similarity=0.076 Sum_probs=129.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhc---CCC-cEEEEEE-cCCHHHHHHHHHHcCCCCCCcccCC----------------
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITL---APN-AVLSAVA-SRSLEKATNFAKANNFPPDAKVYGS---------------- 64 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~---~~~-~~vv~v~-d~~~~~~~~~~~~~~~~~~~~~~~~---------------- 64 (362)
++-||.|+|. |+||..-+..+++ +|+ ++|+|+. .++.+.+.+.+++|+.. ..+..|
T Consensus 76 ~mk~I~ILGSTGSIGtqTLdVi~~~p~~pd~f~V~aLaAg~Nv~lL~eQ~~ef~P~--~v~v~d~~~~~~L~~~l~~~~~ 153 (488)
T 3au8_A 76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPE--YLCIHDKSVYEELKELVKNIKD 153 (488)
T ss_dssp -CEEEEEETTTSHHHHHHHHHHHHHHHHSCCEEEEEEEESSCHHHHHHHHHHHCCS--EEEESCGGGTHHHHTGGGGSTT
T ss_pred cceEEEEEccCcHHHHHHHHHHHcccCCCCeEEEEEEEcCCCHHHHHHHHHHcCCC--EEEEcCHHHHHHHHHHhhhhcC
Confidence 4567999995 9999999999988 554 9999965 56778888888888632 111111
Q ss_pred -----------HHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHc-CCEEEEee
Q 018020 65 -----------YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEEN-GVQLMDGT 131 (362)
Q Consensus 65 -----------~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~-~~~~~v~~ 131 (362)
+.++...+++|.|+.+..-..-..-..+|+++||.|.+--- .+ +....=+.++++++ |..+..
T Consensus 154 ~~~~v~~G~egl~e~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~IALANK--ESLV~aG~Lv~~~a~~~~g~~IlP-- 229 (488)
T 3au8_A 154 YKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALANK--ESIVSAGFFLKKLLNIHKNAKIIP-- 229 (488)
T ss_dssp CCCEEEEHHHHHHHHHHCTTCCEEEECCCHHHHHHHHHHHHHTTCEEEECCS--HHHHHHHHHHHHHHHHSTTCEEEE--
T ss_pred CCceEEeCHHHHHHHhcCCCCCEEEEccccHhHHHHHHHHHHCCCcEEEecc--hhhhhchHHHHHHHHhcCCCeEEE--
Confidence 22344456799999999999999999999999999997322 12 44555567778888 887763
Q ss_pred ecccChhHHHHHHhhcCCC-------------CccceEEEEEEeeecCCcccc----c----CccCcCCCCCCC-ccccc
Q 018020 132 MWVHNPRTAQMKEFVSDPQ-------------RFGQLRTMHSCFSFAGDAEFL----K----NDIRVKPDLDGL-GALGD 189 (362)
Q Consensus 132 ~~r~~p~~~~~k~~i~~~g-------------~iG~i~~i~~~~~~~~~~~~~----~----~~w~~~~~~~gg-g~l~~ 189 (362)
-+.....+-|++ ..+ ...+|..+-..-+..+...+. . ..=-.+|.++.| .+-.|
T Consensus 230 ---VDSEHsAIFQcL-~g~~~~~~~~~~~~~~~~~~V~kIiLTASGGPFR~~~~eeL~~VTpeqALkHPnWsMG~KITID 305 (488)
T 3au8_A 230 ---VDSEHSAIFQCL-DNNKVLKTKCLQDNFSKINNINKIFLCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITID 305 (488)
T ss_dssp ---CSHHHHHHHHHS-CHHHHTTSCTTCTTHHHHTTEEEEEEEECCCTTTTCCHHHHTTCCTTTC---------CHHHHH
T ss_pred ---echhHHHHHHHh-cCCcccccccccccccccccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCccCCceeeee
Confidence 355556666666 322 123466666554433211110 0 000001111111 11111
Q ss_pred cc---chHHHH--HHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 190 AG---WYGIRS--ILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 190 ~g---~h~id~--~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
-. --.+.+ ..||||. +++++.....+ ....+.+++|.||.+
T Consensus 306 SATMmNKGLEvIEA~~LF~v-~~d~IeVvVHP-------QSIIHSmVef~DGSv 351 (488)
T 3au8_A 306 SATMMNKGLEVIETHFLFDV-DYNDIEVIVHK-------ECIIHSCVEFIDKSV 351 (488)
T ss_dssp HHSSHHHHHHHHHHHHHHTC-CGGGEEEEECT-------TCCEEEEEEETTSCE
T ss_pred hHhHhhhhHHHhHHHHHcCC-CHHHeEEEECC-------CCceeEEEEEeCCcE
Confidence 11 012333 5899995 46777777432 225688999999976
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.8e-05 Score=71.88 Aligned_cols=84 Identities=11% Similarity=0.173 Sum_probs=59.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC------CcEEEEEEcCCHH-----HHHHHHHHc-------C--CCCCCcccCCHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP------NAVLSAVASRSLE-----KATNFAKAN-------N--FPPDAKVYGSYE 66 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~------~~~vv~v~d~~~~-----~~~~~~~~~-------~--~~~~~~~~~~~~ 66 (362)
.++||+|||+|.||..++..|.+.. ..+| .++|++++ +.+.+.+.. + ++.++...+|++
T Consensus 7 ~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V-~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
T 1x0v_A 7 ASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRV-TMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV 85 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEE-EEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeE-EEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence 3689999999999999988886542 1454 57889887 777776532 1 112234567888
Q ss_pred HHhcCCCCcEEEEcCCCcccHHHHHHH
Q 018020 67 ALLDDKDIDAVYLPLPTSMHVKWAISV 93 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~~~h~~~~~~a 93 (362)
+.+.+ .|+|++++|+....+++...
T Consensus 86 ~~~~~--aD~Vilav~~~~~~~v~~~i 110 (354)
T 1x0v_A 86 QAAED--ADILIFVVPHQFIGKICDQL 110 (354)
T ss_dssp HHHTT--CSEEEECCCGGGHHHHHHHH
T ss_pred HHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence 88874 99999999986655555443
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=72.64 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=67.2
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHHHc----CCCCCCcccC--CHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAKAN----NFPPDAKVYG--SYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~~~----~~~~~~~~~~--~~~e~l~~~~~D~V~ 78 (362)
++||+|+|+ |.+|...++.|.++|++++++++++. +...+.+.+.+ +. .+..+.+ +.+++++ ++|+|+
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~~~~~~~~~--~~Dvvf 80 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPMSDISEFSP--GVDVVF 80 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEESSGGGTCT--TCSEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCc-cceeEeccCCHHHHhc--CCCEEE
Confidence 589999995 99999999999999999999998765 12233343332 11 0112222 4444443 699999
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEE
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
.|+|...-.+++..++++|..|+-
T Consensus 81 ~a~p~~~s~~~~~~~~~~g~~vID 104 (337)
T 3dr3_A 81 LATAHEVSHDLAPQFLEAGCVVFD 104 (337)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEE
T ss_pred ECCChHHHHHHHHHHHHCCCEEEE
Confidence 999999999999999999977653
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.87 E-value=1.2e-05 Score=74.65 Aligned_cols=93 Identities=14% Similarity=0.257 Sum_probs=65.3
Q ss_pred CceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC------C---CCCcccCCHHH--HhcCCC
Q 018020 6 QAAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF------P---PDAKVYGSYEA--LLDDKD 73 (362)
Q Consensus 6 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~------~---~~~~~~~~~~e--~l~~~~ 73 (362)
|+++|||||| +|..|..+++.|.++|.++|+.++.......+.+.+.+.. | .+ ..+.+.++ .++ +
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~-~~v~~~~~~~~~~--~ 93 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQD-IVVQECKPEGNFL--E 93 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHT-CBCEESSSCTTGG--G
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhccccccccccccccc-ceEEeCchhhhcc--c
Confidence 5689999999 5889999999999999999998864333333444433210 0 00 11222221 233 5
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEE
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~ 101 (362)
+|+|+.|+|.....+++..++++|..|+
T Consensus 94 ~Dvvf~alp~~~s~~~~~~~~~~G~~VI 121 (381)
T 3hsk_A 94 CDVVFSGLDADVAGDIEKSFVEAGLAVV 121 (381)
T ss_dssp CSEEEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECCChhHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999997766
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.1e-05 Score=69.31 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=56.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC---------CCcccCCHHHHhcC-CCCcEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP---------DAKVYGSYEALLDD-KDIDAV 77 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~e~l~~-~~~D~V 77 (362)
+|||+|||+|.||..++..|.+. +.+|+ ++|+++++.+.+.+. |+.. .+. ..+.+++.+. .+.|+|
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~-g~~V~-~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~v 78 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG-GNDVT-LIDQWPAHIEAIRKN-GLIADFNGEEVVANLP-IFSPEEIDHQNEQVDLI 78 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHH-CEEEEETTEEEEECCC-EECGGGCCTTSCCCSEE
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCcEE-EEECCHHHHHHHHhC-CEEEEeCCCeeEecce-eecchhhcccCCCCCEE
Confidence 57999999999999999998776 56755 789999988888765 3210 001 1133444331 269999
Q ss_pred EEcCCCcccHHHHHHH
Q 018020 78 YLPLPTSMHVKWAISV 93 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~a 93 (362)
++++|+....+++...
T Consensus 79 i~~v~~~~~~~v~~~l 94 (316)
T 2ew2_A 79 IALTKAQQLDAMFKAI 94 (316)
T ss_dssp EECSCHHHHHHHHHHH
T ss_pred EEEeccccHHHHHHHH
Confidence 9999987666555443
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-05 Score=69.64 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=79.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-++.|||+|.+|+..+..+... ++.-+.|++|+.+++++++++++.+ +..++. ..+.|+|+.+||...+..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~-G~~~i~v~nRt~~ka~~la~~~~~~----~~~~~~----~~~~DivInaTp~gm~~~ 190 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAALYGYA----YINSLE----NQQADILVNVTSIGMKGG 190 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHHHTCE----EESCCT----TCCCSEEEECSSTTCTTS
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHcCCc----cchhhh----cccCCEEEECCCCCccCc
Confidence 4799999999999999888877 5533558999999999999988631 222222 236999999999876531
Q ss_pred -------HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 89 -------WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 89 -------~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
+-...+..+..| ++ +..++.+. .+++.|++.|..+.-|...
T Consensus 191 ~~~~~~~~~~~~l~~~~~v-~D--lvY~P~~T-~ll~~A~~~G~~~i~Gl~M 238 (271)
T 1npy_A 191 KEEMDLAFPKAFIDNASVA-FD--VVAMPVET-PFIRYAQARGKQTISGAAV 238 (271)
T ss_dssp TTTTSCSSCHHHHHHCSEE-EE--CCCSSSSC-HHHHHHHHTTCEEECHHHH
T ss_pred cccCCCCCCHHHcCCCCEE-EE--eecCCCCC-HHHHHHHHCCCEEECCHHH
Confidence 234566666544 44 44444444 7888899999887666444
|
| >1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O* | Back alignment and structure |
|---|
Probab=97.81 E-value=9.8e-05 Score=67.33 Aligned_cols=100 Identities=19% Similarity=0.119 Sum_probs=69.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcC-CHHHHHHHHHH---cCCCCC----------------Cccc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASR-SLEKATNFAKA---NNFPPD----------------AKVY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~-~~~~~~~~~~~---~~~~~~----------------~~~~--~ 63 (362)
++||||+|+|.+|+..++.+.++ |.++|++|.|. +.+....+.+- +|...+ ..++ .
T Consensus 1 ~ikVgInG~G~IGr~llR~l~~~~~p~~eivaInd~~~~~~~a~ll~sds~~G~~~~~v~~~~~~~l~v~g~~i~v~~~~ 80 (337)
T 1rm4_O 1 KLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR 80 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCCeEEEEEEcCCCHHHHHHHhcccccCCCccceeEEecCCeEEECCeEEEEEecC
Confidence 47999999999999999999888 99999999986 33333333221 111100 0011 2
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
+.+++ ..+.++|+|+-|||.....+.+...+++| |-|.+--|+.
T Consensus 81 dp~~i~w~~~gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~r 126 (337)
T 1rm4_O 81 NPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGK 126 (337)
T ss_dssp CGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred ChhhCcccccCCCEEEECCCchhhHHHHHHHHHcCCEEEEECCccc
Confidence 33332 22226999999999999999999999999 6666666653
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.79 E-value=5.6e-05 Score=69.21 Aligned_cols=81 Identities=14% Similarity=0.178 Sum_probs=58.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcC-CC-----CCCcccC--CHHHHhcCCCCcEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANN-FP-----PDAKVYG--SYEALLDDKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~-~~-----~~~~~~~--~~~e~l~~~~~D~V~ 78 (362)
|||+|||+|.||..++..|.+. +.+|+ ++|+ ++++.+.+.+..- +. ....+.+ ++++.+.. .|+|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~-g~~V~-~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~D~vi 76 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN-GNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN--AEVVL 76 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-CCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT--CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCeEE-EEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc--CCEEE
Confidence 4799999999999999988765 45655 7899 8888887765431 00 0013445 77777764 99999
Q ss_pred EcCCCcccHHHHHHH
Q 018020 79 LPLPTSMHVKWAISV 93 (362)
Q Consensus 79 i~~~~~~h~~~~~~a 93 (362)
+++|+..+.+++...
T Consensus 77 ~~v~~~~~~~v~~~i 91 (335)
T 1txg_A 77 LGVSTDGVLPVMSRI 91 (335)
T ss_dssp ECSCGGGHHHHHHHH
T ss_pred EcCChHHHHHHHHHH
Confidence 999998776666543
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=6e-05 Score=66.63 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=77.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH-
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV- 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~- 87 (362)
-|+.|||+|.+|+..+..|.+.. .+| .|++|+.+++++++ ++++. .. +++++ . +.|+|+.+||...+.
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G-~~v-~V~nRt~~ka~~la-~~~~~----~~-~~~~l-~--~~DiVInaTp~Gm~~~ 187 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQG-LQV-SVLNRSSRGLDFFQ-RLGCD----CF-MEPPK-S--AFDLIINATSASLHNE 187 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT-CEE-EEECSSCTTHHHHH-HHTCE----EE-SSCCS-S--CCSEEEECCTTCCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHCC-CEE-EEEeCCHHHHHHHH-HCCCe----Ee-cHHHh-c--cCCEEEEcccCCCCCC
Confidence 47999999999999999998885 665 48999999999999 77742 21 33333 2 699999999976542
Q ss_pred -----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 88 -----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 88 -----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
+.+...++.+ .+++| +..++ -..+++.|++.|+...-|.....
T Consensus 188 ~~l~~~~l~~~l~~~-~~v~D--~vY~P--~T~ll~~A~~~G~~~~~Gl~MLv 235 (269)
T 3phh_A 188 LPLNKEVLKGYFKEG-KLAYD--LAYGF--LTPFLSLAKELKTPFQDGKDMLI 235 (269)
T ss_dssp CSSCHHHHHHHHHHC-SEEEE--SCCSS--CCHHHHHHHHTTCCEECSHHHHH
T ss_pred CCCChHHHHhhCCCC-CEEEE--eCCCC--chHHHHHHHHCcCEEECCHHHHH
Confidence 2223356655 45555 34444 23388889999988877654443
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=2e-05 Score=75.46 Aligned_cols=109 Identities=14% Similarity=0.196 Sum_probs=81.1
Q ss_pred ceeEEEEEecc----HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAA----DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G----~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
++-+|+|||++ .+|..++..+++.+... +..+++... +-.|+ .+|.|++++.+ .+|+++|++|
T Consensus 7 ~p~siAVvGas~~~~~~g~~v~~~l~~~g~~~-v~pVnP~~~------~i~G~----~~y~sl~~lp~--~~Dlavi~vp 73 (457)
T 2csu_A 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGK-VYPVNIKEE------EVQGV----KAYKSVKDIPD--EIDLAIIVVP 73 (457)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSE-EEEECSSCS------EETTE----ECBSSTTSCSS--CCSEEEECSC
T ss_pred CCCeEEEECcCCCCCchHHHHHHHHHHcCCCE-EEEECCCCC------eECCE----eccCCHHHcCC--CCCEEEEecC
Confidence 46789999997 67999999998775333 445555421 12354 69999999876 5999999999
Q ss_pred CcccHHHHHHHHHcCCeEEEeCCCCCC--H----HHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLMEKPMALN--V----AEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~EKP~~~~--~----~~~~~l~~~a~~~~~~~~ 128 (362)
+..+.+++.+|+++|.+.++-.+-... - +..+++.+.++++|+.+.
T Consensus 74 ~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi 125 (457)
T 2csu_A 74 KRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII 125 (457)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999654443332221 1 236889999999998876
|
| >2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis} | Back alignment and structure |
|---|
Probab=97.78 E-value=3e-05 Score=70.80 Aligned_cols=120 Identities=15% Similarity=0.093 Sum_probs=89.4
Q ss_pred eeEEEEEeccHHHHH---HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARK---LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~---~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+-|+.|.+.|.++.. .+..+.+.++.++||++|.+ ...+.+.+-.|++.++.++.|++++++. ++|++++.+.|.
T Consensus 7 ~~~~vi~~~g~~~~~~aKta~gl~r~~~~~iVgvid~~-~~G~d~ge~~g~~~gipi~~~l~~al~~-~~d~lvig~a~~ 84 (349)
T 2obn_A 7 NQRVAILLHEGTTGTIGKTGLALLRYSEAPIVAVIDRN-CAGQSLREITGIYRYVPIVKSVEAALEY-KPQVLVIGIAPK 84 (349)
T ss_dssp CCCEEEECTTTSSSSSCHHHHHHHHHCCSCEEEEECGG-GTTSCHHHHHCCCSCCCEESSHHHHGGG-CCSEEEECCCCC
T ss_pred CCcEEEEeCCCCCcHHHHHhHHhhhcCCCcEEEEEeCC-CCCCcHHHhcCCcCCCCccCCHHHHHhC-CCCEEEEEecCC
Confidence 457899999988763 34445666679999999976 3334445555666667789999999964 799999997433
Q ss_pred ------ccHHHHHHHHHcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh
Q 018020 85 ------MHVKWAISVAQKKKHLL--MEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNP 137 (362)
Q Consensus 85 ------~h~~~~~~al~~gk~V~--~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p 137 (362)
.=.+.+.+|+++|++|. ++-|++.+.+ +.++|++ |+.++.- |..|
T Consensus 85 gG~l~~~~~~~i~~Al~~G~~Vvsglh~~l~~~pe----l~~~A~~-g~~i~dv---r~pp 137 (349)
T 2obn_A 85 GGGIPDDYWIELKTALQAGMSLVNGLHTPLANIPD----LNALLQP-GQLIWDV---RKEP 137 (349)
T ss_dssp CC-SCGGGHHHHHHHHHTTCEEEECSSSCCTTCHH----HHHHCCT-TCCEEET---TCCC
T ss_pred CCCCCHHHHHHHHHHHHcCCcEEeCccchhhCCHH----HHHHHHc-CCEEEEe---ccCc
Confidence 33589999999999997 5557777766 7788888 9888753 5555
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00012 Score=68.94 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=54.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------------CCCcccCCHHHHhcCCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------------PDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~e~l~~~~~ 74 (362)
|||+|||+|.||..++..|.+ +.+|+ ++|+++++.+.+.+.. .+ ......+++.+.++. .
T Consensus 1 MkI~VIG~G~vG~~~A~~La~--G~~V~-~~d~~~~~~~~l~~~~-~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~--a 74 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL--QNEVT-IVDILPSKVDKINNGL-SPIQDEYIEYYLKSKQLSIKATLDSKAAYKE--A 74 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT--TSEEE-EECSCHHHHHHHHTTC-CSSCCHHHHHHHHHSCCCEEEESCHHHHHHH--C
T ss_pred CEEEEECCCHHHHHHHHHHhC--CCEEE-EEECCHHHHHHHHcCC-CCcCCCCHHHHHHhccCcEEEeCCHHHHhcC--C
Confidence 489999999999999998876 57765 6899999888875432 21 012445677777764 8
Q ss_pred cEEEEcCCCcc
Q 018020 75 DAVYLPLPTSM 85 (362)
Q Consensus 75 D~V~i~~~~~~ 85 (362)
|+|++++|+..
T Consensus 75 Dvviiavpt~~ 85 (402)
T 1dlj_A 75 ELVIIATPTNY 85 (402)
T ss_dssp SEEEECCCCCE
T ss_pred CEEEEecCCCc
Confidence 99999999985
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00016 Score=61.96 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=73.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~~~ 83 (362)
|||.|+|+|.+|...+..|.+. +.+++ ++|+++++.+.++++.+.. .++ ++.+.+-+ -.+.|+|++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~-g~~v~-vid~~~~~~~~l~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 75 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR-KYGVV-IINKDRELCEEFAKKLKAT---IIHGDGSHKEILRDAEVSKNDVVVILTPR 75 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT-TCCEE-EEESCHHHHHHHHHHSSSE---EEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHcCCe---EEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence 5799999999999999999876 66766 6789999999888776643 222 23332321 2479999999999
Q ss_pred cccHHHHHHHHHc--C-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 84 SMHVKWAISVAQK--K-KHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 84 ~~h~~~~~~al~~--g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
+.-...+...++. + ++|++ .+.+.+..+.+ ++.|...
T Consensus 76 d~~n~~~~~~a~~~~~~~~iia---~~~~~~~~~~l----~~~G~d~ 115 (218)
T 3l4b_C 76 DEVNLFIAQLVMKDFGVKRVVS---LVNDPGNMEIF----KKMGITT 115 (218)
T ss_dssp HHHHHHHHHHHHHTSCCCEEEE---CCCSGGGHHHH----HHHTCEE
T ss_pred cHHHHHHHHHHHHHcCCCeEEE---EEeCcchHHHH----HHCCCCE
Confidence 8766666655543 4 56776 34455554433 5566654
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00023 Score=67.05 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=66.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+|+|||+|.+|...+..++.. ++ +| .++|+++++++.+++++|.. +..++++.+++. +.|+|+.+||...+
T Consensus 167 g~~VlIiGaG~iG~~~a~~l~~~-G~~~V-~v~~r~~~ra~~la~~~g~~--~~~~~~l~~~l~--~aDvVi~at~~~~~ 240 (404)
T 1gpj_A 167 DKTVLVVGAGEMGKTVAKSLVDR-GVRAV-LVANRTYERAVELARDLGGE--AVRFDELVDHLA--RSDVVVSATAAPHP 240 (404)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHH-CCSEE-EEECSSHHHHHHHHHHHTCE--ECCGGGHHHHHH--TCSEEEECCSSSSC
T ss_pred CCEEEEEChHHHHHHHHHHHHHC-CCCEE-EEEeCCHHHHHHHHHHcCCc--eecHHhHHHHhc--CCCEEEEccCCCCc
Confidence 46899999999999999988876 56 54 48899999988888888742 112467788876 49999999987665
Q ss_pred H---HHHHH-HHHc---CCeEEEe
Q 018020 87 V---KWAIS-VAQK---KKHLLME 103 (362)
Q Consensus 87 ~---~~~~~-al~~---gk~V~~E 103 (362)
. +.+.. +++. |.-+++.
T Consensus 241 ~~~~~~l~~~~lk~r~~~~~v~vd 264 (404)
T 1gpj_A 241 VIHVDDVREALRKRDRRSPILIID 264 (404)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred eecHHHHHHHHHhccCCCCEEEEE
Confidence 3 44444 4542 4556654
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.70 E-value=3.8e-05 Score=71.67 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=57.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCC------CcEEEEEEcCCHH-----HHHHHHHHc-------C--CCCCCcccCCHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAP------NAVLSAVASRSLE-----KATNFAKAN-------N--FPPDAKVYGSYEA 67 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~------~~~vv~v~d~~~~-----~~~~~~~~~-------~--~~~~~~~~~~~~e 67 (362)
++||+|||+|.||..++..|.+.. ..+| .++|++++ +++.+.+.. + ++.++...+|+++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V-~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e 99 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEV-RMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS 99 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCE-EEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeE-EEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH
Confidence 468999999999999888876542 1454 47888887 777776532 1 1123456678888
Q ss_pred HhcCCCCcEEEEcCCCcccHHHHHH
Q 018020 68 LLDDKDIDAVYLPLPTSMHVKWAIS 92 (362)
Q Consensus 68 ~l~~~~~D~V~i~~~~~~h~~~~~~ 92 (362)
.+.+ .|+|++++|+....+++..
T Consensus 100 a~~~--aDvVilav~~~~~~~vl~~ 122 (375)
T 1yj8_A 100 VIND--ADLLIFIVPCQYLESVLAS 122 (375)
T ss_dssp HHTT--CSEEEECCCHHHHHHHHHH
T ss_pred HHcC--CCEEEEcCCHHHHHHHHHH
Confidence 8875 8999999998655555443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.69 E-value=7.8e-05 Score=67.64 Aligned_cols=82 Identities=10% Similarity=0.085 Sum_probs=56.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCC----C-cEEEEEEcCCHHHHHHHHHHcCCCC----------CCcccCCHHHHhcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAP----N-AVLSAVASRSLEKATNFAKANNFPP----------DAKVYGSYEALLDD 71 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~----~-~~vv~v~d~~~~~~~~~~~~~~~~~----------~~~~~~~~~e~l~~ 71 (362)
.+|||+|||+|.||..++..|.+.+ + .+|+ ++++ +++.+.+.++.|+.. .+.+.++.+ .+.
T Consensus 7 ~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~-~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~- 82 (317)
T 2qyt_A 7 QPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVS-WIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPA-EVG- 82 (317)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEE-EECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHH-HHC-
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEE-EEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCcc-ccC-
Confidence 3589999999999999988887651 4 6655 6788 777888776345320 011124444 344
Q ss_pred CCCcEEEEcCCCcccHHHHHHH
Q 018020 72 KDIDAVYLPLPTSMHVKWAISV 93 (362)
Q Consensus 72 ~~~D~V~i~~~~~~h~~~~~~a 93 (362)
+.|+|++++|+....+.+...
T Consensus 83 -~~D~vil~vk~~~~~~v~~~i 103 (317)
T 2qyt_A 83 -TVDYILFCTKDYDMERGVAEI 103 (317)
T ss_dssp -CEEEEEECCSSSCHHHHHHHH
T ss_pred -CCCEEEEecCcccHHHHHHHH
Confidence 599999999998876655443
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.68 E-value=5.3e-05 Score=58.60 Aligned_cols=101 Identities=15% Similarity=0.157 Sum_probs=76.0
Q ss_pred eeEEEEEecc----HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAA----DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G----~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+-+|+|||+. ..|...+..|++. +++|.. +++..+ +-.| .++|.|+.++-+ +|+|+|++|+
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~-g~~V~p-VnP~~~------~i~G----~~~y~sl~dlp~---vDlavi~~p~ 68 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSH-GHEFIP-VGRKKG------EVLG----KTIINERPVIEG---VDTVTLYINP 68 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHH-TCCEEE-ESSSCS------EETT----EECBCSCCCCTT---CCEEEECSCH
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHC-CCeEEE-ECCCCC------cCCC----eeccCChHHCCC---CCEEEEEeCH
Confidence 5579999984 4677888888876 567554 344321 1124 368999888753 9999999999
Q ss_pred cccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 84 SMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
..-.+++.+|.+.| |.|++. |-..+ +++.+.|+++|+.+.
T Consensus 69 ~~v~~~v~e~~~~g~k~v~~~-~G~~~----~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 69 QNQLSEYNYILSLKPKRVIFN-PGTEN----EELEEILSENGIEPV 109 (122)
T ss_dssp HHHGGGHHHHHHHCCSEEEEC-TTCCC----HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEC-CCCCh----HHHHHHHHHcCCeEE
Confidence 99999999999999 666654 43332 589999999999877
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00023 Score=64.19 Aligned_cols=74 Identities=8% Similarity=0.151 Sum_probs=54.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCCCC--------------CCcccC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNFPP--------------DAKVYG 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~~~--------------~~~~~~ 63 (362)
..||+|||+|.||...+..+.+. +++|+ ++|+++++++...+ +.|.-. .+...+
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~-G~~V~-~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~ 92 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT-GHTVV-LVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 92 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEec
Confidence 45899999999999999888776 67765 89999987765422 122100 123567
Q ss_pred CHHHHhcCCCCcEEEEcCCCcc
Q 018020 64 SYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 64 ~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|+++.+++ .|+|++++|...
T Consensus 93 ~~~~~~~~--aD~Vi~avp~~~ 112 (302)
T 1f0y_A 93 DAASVVHS--TDLVVEAIVENL 112 (302)
T ss_dssp CHHHHTTS--CSEEEECCCSCH
T ss_pred CHHHhhcC--CCEEEEcCcCcH
Confidence 88887775 999999999875
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00012 Score=67.56 Aligned_cols=107 Identities=10% Similarity=0.026 Sum_probs=74.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc-cc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS-MH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-~h 86 (362)
-.+|+|+|+|.+|...+..+.+. +++|+ ++|++++++++++++++. . +.+.++++. .++|+++.|...+ ..
T Consensus 173 GktV~V~G~G~VG~~~A~~L~~~-GakVv-v~D~~~~~l~~~a~~~ga----~-~v~~~~ll~-~~~DIvip~a~~~~I~ 244 (364)
T 1leh_A 173 GLAVSVQGLGNVAKALCKKLNTE-GAKLV-VTDVNKAAVSAAVAEEGA----D-AVAPNAIYG-VTCDIFAPCALGAVLN 244 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHHHCC----E-ECCGGGTTT-CCCSEEEECSCSCCBS
T ss_pred cCEEEEECchHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHHcCC----E-EEChHHHhc-cCCcEeeccchHHHhC
Confidence 46799999999999999999888 78888 999999999999998873 2 346677776 3799999875443 33
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.+ ..+ |..+++|.--... .++ ..+..++.|+.+.
T Consensus 245 ~~~~-~~l--g~~iV~e~An~p~t~~e---a~~~L~~~Gi~~~ 281 (364)
T 1leh_A 245 DFTI-PQL--KAKVIAGSADNQLKDPR---HGKYLHELGIVYA 281 (364)
T ss_dssp TTHH-HHC--CCSEECCSCSCCBSSHH---HHHHHHHHTCEEC
T ss_pred HHHH-HhC--CCcEEEeCCCCCcccHH---HHHHHHhCCCEEe
Confidence 3332 222 6678888632222 123 3455666776544
|
| >3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00034 Score=63.64 Aligned_cols=120 Identities=7% Similarity=0.079 Sum_probs=84.7
Q ss_pred CceeEEEEEec-cHHHHHHHHH--HhcCCCcEEEEEEcCCHHH-HHHHHHHcCCC-CCCcccCCHHHHhcC-CCCcEEEE
Q 018020 6 QAAIRFGIIGA-ADIARKLSRA--ITLAPNAVLSAVASRSLEK-ATNFAKANNFP-PDAKVYGSYEALLDD-KDIDAVYL 79 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~--~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~-~~~~~~~~~~e~l~~-~~~D~V~i 79 (362)
.+.+||.+-|+ |.+++..+.. +.+.++.++++.+++...- -+++ .+|.+ .+..+|.|++|+++. +++|+++|
T Consensus 8 ~~~tkviV~G~~Gk~~~~ml~~~~~~~r~~~~vVagV~P~~~g~~~~v--~~G~~~~Gvpvy~sv~ea~~~~p~~DlaVi 85 (334)
T 3mwd_B 8 SRHTKAIVWGMQTRAVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKF--YWGHKEILIPVFKNMADAMRKHPEVDVLIN 85 (334)
T ss_dssp CTTCCEEEESCCHHHHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEE--EETTEEEEEEEESSHHHHHHHCTTCCEEEE
T ss_pred CCCCeEEEECCchHHHHHHHHhcccccCCCceEEEEEcCCCCCccceE--eccCccCCceeeCCHHHHhhcCCCCcEEEE
Confidence 35789999998 5555555444 4455679999999986420 0111 01211 123599999999865 36999999
Q ss_pred cCCCcccHHHHHHHHH-cC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 80 PLPTSMHVKWAISVAQ-KK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~-~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++|+..-...+.+++. +| +.|+|=.. ..+.++.++|.+.|+++|+.++
T Consensus 86 ~vp~~~a~~ai~ea~~~~Gv~~vViiT~-G~~e~~~~~l~~~a~~~g~rli 135 (334)
T 3mwd_B 86 FASLRSAYDSTMETMNYAQIRTIAIIAE-GIPEALTRKLIKKADQKGVTII 135 (334)
T ss_dssp CCCTTTHHHHHHHHTTSTTCCEEEECCS-CCCHHHHHHHHHHHHHHTCEEE
T ss_pred ecCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHcCCEEE
Confidence 9999998888888887 88 56776221 4456788999999999998654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00036 Score=55.24 Aligned_cols=119 Identities=14% Similarity=0.166 Sum_probs=76.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH--HHHhc---CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY--EALLD---DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~e~l~---~~~~D~V~i~~~ 82 (362)
+-+|.|+|+|.+|...+..|.+. +.+++ ++|+++++.+.+.+ .|++ .++.|. .+.|. -.+.|+|++++|
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~-g~~v~-vid~~~~~~~~~~~-~g~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLAS-DIPLV-VIETSRTRVDELRE-RGVR---AVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEE-EEESCHHHHHHHHH-TTCE---EEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCCEEEECcCHHHHHHHHHHHHC-CCCEE-EEECCHHHHHHHHH-cCCC---EEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 46799999999999999999876 67766 77899998887765 5553 233222 23332 246899999999
Q ss_pred CcccHHHHHHHH-Hc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 83 TSMHVKWAISVA-QK--KKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 83 ~~~h~~~~~~al-~~--gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
++.....+...+ +. +.+|++ .+.+.+..+.+ ++.|+...+ .|.....+++
T Consensus 81 ~~~~n~~~~~~a~~~~~~~~iia---r~~~~~~~~~l----~~~G~d~vi------~p~~~~a~~i 133 (140)
T 3fwz_A 81 NGYEAGEIVASARAKNPDIEIIA---RAHYDDEVAYI----TERGANQVV------MGEREIARTM 133 (140)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEE---EESSHHHHHHH----HHTTCSEEE------EHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCeEEE---EECCHHHHHHH----HHCCCCEEE------CchHHHHHHH
Confidence 986654333333 32 467776 34566665433 456765544 4554444443
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00018 Score=64.68 Aligned_cols=116 Identities=14% Similarity=0.251 Sum_probs=76.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+|+|||+|.+|...+..++.. +++|+ ++|+++++.+.+. ++|.. ..-+.++++++.. .|+|++++|...-.
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~-~~dr~~~~~~~~~-~~g~~--~~~~~~l~~~l~~--aDvVi~~~p~~~i~ 227 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAAL-GAKVK-VGARESDLLARIA-EMGME--PFHISKAAQELRD--VDVCINTIPALVVT 227 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESSHHHHHHHH-HTTSE--EEEGGGHHHHTTT--CSEEEECCSSCCBC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHH-HCCCe--ecChhhHHHHhcC--CCEEEECCChHHhC
Confidence 46899999999999999999877 57755 7899987766543 56642 1113678888874 99999999986544
Q ss_pred HHHHHHHHcCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCEEE--EeeecccChh
Q 018020 88 KWAISVAQKKKHLLME---KPMALNVAEFDVILNACEENGVQLM--DGTMWVHNPR 138 (362)
Q Consensus 88 ~~~~~al~~gk~V~~E---KP~~~~~~~~~~l~~~a~~~~~~~~--v~~~~r~~p~ 138 (362)
+-....++.|. +++. .|...+. +.+++.|+.+. .+..-...|.
T Consensus 228 ~~~l~~mk~~~-~lin~ar~~~~~~~-------~~a~~~Gv~~~~~~~l~~~v~p~ 275 (293)
T 3d4o_A 228 ANVLAEMPSHT-FVIDLASKPGGTDF-------RYAEKRGIKALLVPGLPGIVAPK 275 (293)
T ss_dssp HHHHHHSCTTC-EEEECSSTTCSBCH-------HHHHHHTCEEEECCCHHHHHCHH
T ss_pred HHHHHhcCCCC-EEEEecCCCCCCCH-------HHHHHCCCEEEECCCCCcccCHH
Confidence 44455566664 4443 2332332 45567787664 4444445443
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00023 Score=66.96 Aligned_cols=99 Identities=18% Similarity=0.224 Sum_probs=67.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEc---CCHHHHHHHHHHcCC------CCC--------Cc-ccCCHHHHh
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVAS---RSLEKATNFAKANNF------PPD--------AK-VYGSYEALL 69 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d---~~~~~~~~~~~~~~~------~~~--------~~-~~~~~~e~l 69 (362)
+|||+|||+|.||..++..|.+..+.+|+ +++ +++++.+.+.++.++ +++ .. +.+|+++.+
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~-~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 80 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVR-VLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAI 80 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEE-EECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEE-EEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHh
Confidence 47999999999999999988654467766 678 777777764443331 011 12 567888887
Q ss_pred cCCCCcEEEEcCCCcccHHHHHHHHHc-C-CeEEEeCCCCCC
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAISVAQK-K-KHLLMEKPMALN 109 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~~al~~-g-k~V~~EKP~~~~ 109 (362)
.. .|+|++++|+..+.+++...... + ..+++-.+.+..
T Consensus 81 ~~--aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~~~~~G 120 (404)
T 3c7a_A 81 SG--ADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAG 120 (404)
T ss_dssp TT--CSEEEECSCGGGHHHHHHHHTTTCCTTCEEEETTCCTT
T ss_pred CC--CCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEcCCCcc
Confidence 74 99999999999887766554322 1 245555554444
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=6.2e-05 Score=66.97 Aligned_cols=116 Identities=14% Similarity=0.158 Sum_probs=71.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+++|+|+|.+|+..+..+.+.. .+|+ |++|+.+++++++++++....+. ..+++++.+ .++|+|+.+||...+.
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G-~~v~-v~~R~~~~a~~l~~~~~~~~~~~-~~~~~~~~~-~~~DivIn~t~~~~~~ 194 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQ-QNIV-LANRTFSKTKELAERFQPYGNIQ-AVSMDSIPL-QTYDLVINATSAGLSG 194 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTT-CEEE-EEESSHHHHHHHHHHHGGGSCEE-EEEGGGCCC-SCCSEEEECCCC----
T ss_pred CCEEEEECCcHHHHHHHHHHHHCC-CEEE-EEECCHHHHHHHHHHccccCCeE-EeeHHHhcc-CCCCEEEECCCCCCCC
Confidence 358999999999999999888874 6655 89999999999988764200111 234444322 3699999999987764
Q ss_pred HH---HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEe
Q 018020 88 KW---AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDG 130 (362)
Q Consensus 88 ~~---~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~ 130 (362)
.. -...++.|..|+ + +..+..+...+.+.+++.|.. ..-|
T Consensus 195 ~~~~i~~~~l~~~~~v~-D--~~y~p~~~t~ll~~a~~~G~~~~v~G 238 (272)
T 1p77_A 195 GTASVDAEILKLGSAFY-D--MQYAKGTDTPFIALCKSLGLTNVSDG 238 (272)
T ss_dssp ---CCCHHHHHHCSCEE-E--SCCCTTSCCHHHHHHHHTTCCCEECS
T ss_pred CCCCCCHHHcCCCCEEE-E--eeCCCCcCCHHHHHHHHcCCCEeeCC
Confidence 31 124455565444 3 333433312355677777776 5544
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0001 Score=62.84 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=75.1
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
-||.+++|+ |.||+...... ..++++|++..|+..+ +++ + ++|+||-.|.|..-
T Consensus 12 ~~~~~v~Ga~GrMG~~i~~~~-~~~~~elv~~id~~~~------------------~~l----~--~~DVvIDFT~P~a~ 66 (228)
T 1vm6_A 12 HMKYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDVNGV------------------EEL----D--SPDVVIDFSSPEAL 66 (228)
T ss_dssp CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEETTEE------------------EEC----S--CCSEEEECSCGGGH
T ss_pred cceeEEEEecCHHHHHHHHHH-hCCCCEEEEEEcCCCc------------------ccc----c--CCCEEEECCCHHHH
Confidence 589999998 99999887655 5678999999987521 111 2 58999989999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
.+.+..|+++|+++.+-.. +.+.++.+++.+++++ +.+....|+
T Consensus 67 ~~~~~~~~~~g~~~ViGTT-G~~~~~~~~l~~~a~~--~~vv~apNf 110 (228)
T 1vm6_A 67 PKTVDLCKKYRAGLVLGTT-ALKEEHLQMLRELSKE--VPVVQAYNF 110 (228)
T ss_dssp HHHHHHHHHHTCEEEECCC-SCCHHHHHHHHHHTTT--SEEEECSCC
T ss_pred HHHHHHHHHcCCCEEEeCC-CCCHHHHHHHHHHHhh--CCEEEeccc
Confidence 9999999999999888554 4677887777777655 555544443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=97.62 E-value=5e-05 Score=71.93 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=58.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-----CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLA-----PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-----~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.||+|||+|.||..++..|++. .+++++... +..++..+.+.+.|+........|.+|+++. .|+|++++|+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~-r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~--ADVVILaVP~ 131 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGL-RKGSKSFDEARAAGFTEESGTLGDIWETVSG--SDLVLLLISD 131 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEE-CTTCSCHHHHHHTTCCTTTTCEEEHHHHHHH--CSEEEECSCH
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEe-CCchhhHHHHHHCCCEEecCCCCCHHHHHhc--CCEEEECCCh
Confidence 6899999999999999999875 356766444 4334445556677763100113689999886 8999999999
Q ss_pred cccHHHHHHH
Q 018020 84 SMHVKWAISV 93 (362)
Q Consensus 84 ~~h~~~~~~a 93 (362)
..+.++....
T Consensus 132 ~~~~eVl~eI 141 (525)
T 3fr7_A 132 AAQADNYEKI 141 (525)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9887766543
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=67.19 Aligned_cols=66 Identities=27% Similarity=0.393 Sum_probs=52.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.||...+..++.. +++|+ ++|++++. ..+.++|+ . +.+++++++. .|+|++++|..
T Consensus 146 g~~vgIIG~G~iG~~vA~~l~~~-G~~V~-~~d~~~~~--~~~~~~g~----~-~~~l~e~l~~--aDiVil~vp~~ 211 (333)
T 2d0i_A 146 GKKVGILGMGAIGKAIARRLIPF-GVKLY-YWSRHRKV--NVEKELKA----R-YMDIDELLEK--SDIVILALPLT 211 (333)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-TCEEE-EECSSCCH--HHHHHHTE----E-ECCHHHHHHH--CSEEEECCCCC
T ss_pred cCEEEEEccCHHHHHHHHHHHHC-CCEEE-EECCCcch--hhhhhcCc----e-ecCHHHHHhh--CCEEEEcCCCC
Confidence 46899999999999999999876 67865 78888765 33445564 2 3589999875 99999999986
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00014 Score=65.56 Aligned_cols=106 Identities=15% Similarity=0.263 Sum_probs=71.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+|+|||+|.+|...+..++.. +++|+ ++|+++++.+.+.+ +|.. ..-+.+++++++. .|+|++++|...-.
T Consensus 157 g~~v~IiG~G~iG~~~a~~l~~~-G~~V~-~~d~~~~~~~~~~~-~g~~--~~~~~~l~~~l~~--aDvVi~~~p~~~i~ 229 (300)
T 2rir_A 157 GSQVAVLGLGRTGMTIARTFAAL-GANVK-VGARSSAHLARITE-MGLV--PFHTDELKEHVKD--IDICINTIPSMILN 229 (300)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESSHHHHHHHHH-TTCE--EEEGGGHHHHSTT--CSEEEECCSSCCBC
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHH-CCCe--EEchhhHHHHhhC--CCEEEECCChhhhC
Confidence 46899999999999999999877 57755 78999887665543 5532 1114688888874 99999999986543
Q ss_pred HHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 88 KWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+.....++.|. +++.- |...+. +.+++.|+.+.
T Consensus 230 ~~~~~~mk~g~-~lin~a~g~~~~~~-------~~a~~~G~~~i 265 (300)
T 2rir_A 230 QTVLSSMTPKT-LILDLASRPGGTDF-------KYAEKQGIKAL 265 (300)
T ss_dssp HHHHTTSCTTC-EEEECSSTTCSBCH-------HHHHHHTCEEE
T ss_pred HHHHHhCCCCC-EEEEEeCCCCCcCH-------HHHHHCCCEEE
Confidence 33344455553 44442 322222 45566777654
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.58 E-value=3.1e-05 Score=69.05 Aligned_cols=114 Identities=20% Similarity=0.187 Sum_probs=78.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|||+|.+|+..+..|.+. ++.-+.|++|+.+++++++++++. . +++++-+- +.|+|+.+||...+.
T Consensus 122 ~k~vlvlGaGGaaraia~~L~~~-G~~~v~v~nRt~~ka~~La~~~~~----~---~~~~l~~l-~~DivInaTp~Gm~~ 192 (282)
T 3fbt_A 122 NNICVVLGSGGAARAVLQYLKDN-FAKDIYVVTRNPEKTSEIYGEFKV----I---SYDELSNL-KGDVIINCTPKGMYP 192 (282)
T ss_dssp TSEEEEECSSTTHHHHHHHHHHT-TCSEEEEEESCHHHHHHHCTTSEE----E---EHHHHTTC-CCSEEEECSSTTSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHhcCc----c---cHHHHHhc-cCCEEEECCccCccC
Confidence 34899999999999999988877 663355899999999999876631 2 33443322 699999999975442
Q ss_pred -----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 018020 88 -----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV 134 (362)
Q Consensus 88 -----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r 134 (362)
++-...++.+ .+++| +..++.+ -.+++.|++.|+.+.-|....
T Consensus 193 ~~~~~pi~~~~l~~~-~~v~D--lvY~P~~-T~ll~~A~~~G~~~~~Gl~ML 240 (282)
T 3fbt_A 193 KEGESPVDKEVVAKF-SSAVD--LIYNPVE-TLFLKYARESGVKAVNGLYML 240 (282)
T ss_dssp STTCCSSCHHHHTTC-SEEEE--SCCSSSS-CHHHHHHHHTTCEEECSHHHH
T ss_pred CCccCCCCHHHcCCC-CEEEE--EeeCCCC-CHHHHHHHHCcCeEeCcHHHH
Confidence 2344556655 45555 4444433 457778889999887765443
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=66.01 Aligned_cols=78 Identities=21% Similarity=0.128 Sum_probs=53.4
Q ss_pred CCccC-CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCC
Q 018020 1 MATES-QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDK 72 (362)
Q Consensus 1 m~~~~-~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~ 72 (362)
|+.++ ++++||+|||+|.+|...+..+...+.++ +.++|+++++++..+.. .+.+..+..++|+++.+++
T Consensus 1 ~~~~~~~~~~kI~VIGaG~vG~~lA~~la~~g~~~-V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~- 78 (331)
T 1pzg_A 1 MAPALVQRRKKVAMIGSGMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG- 78 (331)
T ss_dssp --CCCCSCCCEEEEECCSHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT-
T ss_pred CCcCcCCCCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC-
Confidence 44433 24589999999999999888886653347 66999998776652221 2333233446899887775
Q ss_pred CCcEEEEcC
Q 018020 73 DIDAVYLPL 81 (362)
Q Consensus 73 ~~D~V~i~~ 81 (362)
.|+|+++.
T Consensus 79 -aDiVi~a~ 86 (331)
T 1pzg_A 79 -ADCVIVTA 86 (331)
T ss_dssp -CSEEEECC
T ss_pred -CCEEEEcc
Confidence 99999987
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.57 E-value=3.2e-05 Score=70.96 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=63.1
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcC--CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLA--PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~--~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~ 82 (362)
+++||+|+| +|.+|...++.+.++ |.++++++.++... .+.+. ++- ... .+.+.+. .+ .++|+|+.|+|
T Consensus 2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~-G~~~~--~~~-~~i-~~~~~~~~~~--~~vDvVf~a~g 74 (336)
T 2r00_A 2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSE-GKTYR--FNG-KTV-RVQNVEEFDW--SQVHIALFSAG 74 (336)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTT-TCEEE--ETT-EEE-EEEEGGGCCG--GGCSEEEECSC
T ss_pred CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCC-CCcee--ecC-cee-EEecCChHHh--cCCCEEEECCC
Confidence 369999999 899999999998887 88999999975321 00000 110 011 1222222 22 36999999999
Q ss_pred CcccHHHHHHHHHcCCeEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~ 102 (362)
...+.+++..++++|..|+.
T Consensus 75 ~~~s~~~a~~~~~~G~~vId 94 (336)
T 2r00_A 75 GELSAKWAPIAAEAGVVVID 94 (336)
T ss_dssp HHHHHHHHHHHHHTTCEEEE
T ss_pred chHHHHHHHHHHHcCCEEEE
Confidence 99999999999999986664
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.56 E-value=6e-05 Score=66.95 Aligned_cols=119 Identities=22% Similarity=0.227 Sum_probs=78.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|+|+|.+|+..+..|.+. ++.-+.|++|+.+++++++++++- .. ....+++++-. .+.|+|+.+||...+.
T Consensus 120 ~k~~lvlGaGg~~~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~-~~-~~~~~~~~l~~-~~~DivInaTp~gm~~ 195 (272)
T 3pwz_A 120 NRRVLLLGAGGAVRGALLPFLQA-GPSELVIANRDMAKALALRNELDH-SR-LRISRYEALEG-QSFDIVVNATSASLTA 195 (272)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHCC-TT-EEEECSGGGTT-CCCSEEEECSSGGGGT
T ss_pred CCEEEEECccHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhcc-CC-eeEeeHHHhcc-cCCCEEEECCCCCCCC
Confidence 35799999999999999988876 653355899999999999998762 11 12234555433 5799999999976542
Q ss_pred H---HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEeeecc
Q 018020 88 K---WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDGTMWV 134 (362)
Q Consensus 88 ~---~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~~~~r 134 (362)
+ +-...++.+ +++++ +..++.+ ..+++.|++.|+. +.-|....
T Consensus 196 ~~~~i~~~~l~~~-~~V~D--lvY~P~~-T~ll~~A~~~G~~~~~~Gl~ML 242 (272)
T 3pwz_A 196 DLPPLPADVLGEA-ALAYE--LAYGKGL-TPFLRLAREQGQARLADGVGML 242 (272)
T ss_dssp CCCCCCGGGGTTC-SEEEE--SSCSCCS-CHHHHHHHHHSCCEEECTHHHH
T ss_pred CCCCCCHHHhCcC-CEEEE--eecCCCC-CHHHHHHHHCCCCEEECCHHHH
Confidence 2 112334444 44555 4444433 3377788888986 66664433
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00057 Score=56.63 Aligned_cols=110 Identities=13% Similarity=0.061 Sum_probs=69.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc---CCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~---~~~~D~V~i~~ 81 (362)
..+|+|+|+|.+|...+..|.+..+.+++ ++|+++++.+.+. +.|.. .++ ++.+.+.+ -.+.|+|++++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~-vid~~~~~~~~~~-~~g~~---~~~gd~~~~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISL-GIEIREEAAQQHR-SEGRN---VISGDATDPDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEE-EEESCHHHHHHHH-HTTCC---EEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEE-EEECCHHHHHHHH-HCCCC---EEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence 45899999999999999988765145655 6799999888765 44542 222 23333322 24689999999
Q ss_pred CCcccHHHHHHHHHc-C--CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 82 PTSMHVKWAISVAQK-K--KHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 82 ~~~~h~~~~~~al~~-g--k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
|+......+...++. | ..|++- +.+.+..+ ..++.|....+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~ii~~---~~~~~~~~----~l~~~G~~~vi 157 (183)
T 3c85_A 114 PHHQGNQTALEQLQRRNYKGQIAAI---AEYPDQLE----GLLESGVDAAF 157 (183)
T ss_dssp SSHHHHHHHHHHHHHTTCCSEEEEE---ESSHHHHH----HHHHHTCSEEE
T ss_pred CChHHHHHHHHHHHHHCCCCEEEEE---ECCHHHHH----HHHHcCCCEEE
Confidence 987655555545544 3 356552 44555544 33455665543
|
| >2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.56 E-value=7e-05 Score=68.53 Aligned_cols=121 Identities=10% Similarity=0.059 Sum_probs=82.7
Q ss_pred ceeEEEEEeccHHHHHHHH----HHhcCCCcEEEEEEcCCHHHHHHHHHHc-CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSR----AITLAPNAVLSAVASRSLEKATNFAKAN-NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~----~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.+-|+.|.|.|.+|...++ .++..+..++|+++ ++. .-+.+.+-. |.+.++.++.|++++++. .+|++++++
T Consensus 21 ~~~~~vi~~~g~~g~~~aKta~gllr~~~~~~iVgvi-~~~-~Gkd~ge~~~g~~~gipv~~d~~~al~~-~~d~lvig~ 97 (350)
T 2g0t_A 21 PGTPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVV-AEH-EGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLIIGV 97 (350)
T ss_dssp TTEEEEEECTTTTTSGGGHHHHHHHHHCSSEEEEEEE-SSC-TTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEEECC
T ss_pred cCCCEEEEeCCCCChHHHHHHHHHHhhCCCCeEEEEe-ecC-CCCcHHHhhCCCCCCceeeCCHHHHHhc-CCCEEEEEe
Confidence 3568999999998765443 34443669999999 542 122222222 344556789999999975 599999987
Q ss_pred CCcc------cHHHHHHHHHcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccCh
Q 018020 82 PTSM------HVKWAISVAQKKKHLLM--EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNP 137 (362)
Q Consensus 82 ~~~~------h~~~~~~al~~gk~V~~--EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p 137 (362)
.+.. =.+.+.+|+++|++|++ +-+ +.+-.++.++|+++|+.+..- |..|
T Consensus 98 a~~gg~l~~~~~~~I~~Al~~G~nVvsglh~~----l~~~pel~~~A~~~Gv~i~dv---r~~p 154 (350)
T 2g0t_A 98 SNPGGYLEEQIATLVKKALSLGMDVISGLHFK----ISQQTEFLKIAHENGTRIIDI---RIPP 154 (350)
T ss_dssp CSCCHHHHHHHHHHHHHHHHTTCEEEECCCC------CCHHHHHHHHHHHTCCEEES---SSCC
T ss_pred cCCCCCCCHHHHHHHHHHHHcCCcEEeCChhh----hhCCHHHHHHHHHCCCEEEEe---CcCC
Confidence 4332 24788899999999985 334 333444788999999988754 6666
|
| >2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00018 Score=65.41 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=70.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHHH---cCCC---------------CCCccc--CCHHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAKA---NNFP---------------PDAKVY--GSYEA 67 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~~---~~~~---------------~~~~~~--~~~~e 67 (362)
+||||+|+|.+|+..++.+.++ ++++++|-|. +.+....+.+- +|.- ....++ .+.++
T Consensus 1 ikVgInG~G~IGr~vlr~l~~~-~~evvaind~~~~~~~a~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~ 79 (331)
T 2g82_O 1 MKVGINGFGRIGRQVFRILHSR-GVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE 79 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred CEEEEECcCHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhHhhhccccCCCCCceEEEcCCEEEECCEEEEEEecCChhh
Confidence 5899999999999999988777 8999999986 55555444331 2210 011222 14444
Q ss_pred H-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 68 L-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 68 ~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
+ ..+.++|+|+-||+.....+.+...+++| |.|++.-|-.
T Consensus 80 l~w~~~gvDiV~estG~~~s~e~a~~~l~aGakkvVIsaps~ 121 (331)
T 2g82_O 80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK 121 (331)
T ss_dssp SCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred CcccccCCCEEEECCCchhhHHHHHHHHHCCCCEEEECCCCc
Confidence 4 23347899999999999999999999999 7788877743
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=97.55 E-value=4.5e-05 Score=72.28 Aligned_cols=90 Identities=16% Similarity=0.092 Sum_probs=64.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCc---EEEEEEcCCHHHHHHHHHHcCCCC-CCcc-cCCHH----HHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNA---VLSAVASRSLEKATNFAKANNFPP-DAKV-YGSYE----ALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~---~vv~v~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~----e~l~~~~~D~V~ 78 (362)
+.||.|||+|.+|+..++.+.+++++ +|+ ++|++...+ .+.+..|+.. ...+ -++++ ++|+. .|+|+
T Consensus 13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~-vaD~~~~~~-~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~--~DvVI 88 (480)
T 2ph5_A 13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVT-IIAAEGTKV-DVAQQYGVSFKLQQITPQNYLEVIGSTLEE--NDFLI 88 (480)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEE-EEESSCCSC-CHHHHHTCEEEECCCCTTTHHHHTGGGCCT--TCEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCCceeEEE-Eeccchhhh-hHHhhcCCceeEEeccchhHHHHHHHHhcC--CCEEE
Confidence 47899999999999999988877765 455 557665432 3344445321 1112 23443 45543 49999
Q ss_pred EcCCCcccHHHHHHHHHcCCeEE
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~ 101 (362)
.++++..-..++..|+++|.|++
T Consensus 89 N~s~~~~~l~Im~acleaGv~Yl 111 (480)
T 2ph5_A 89 DVSIGISSLALIILCNQKGALYI 111 (480)
T ss_dssp ECCSSSCHHHHHHHHHHHTCEEE
T ss_pred ECCccccCHHHHHHHHHcCCCEE
Confidence 99999999999999999999988
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00032 Score=63.58 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=52.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCC-cEEEEEEcCCHHHHHHHHHHcC-----CCCCCcc-cCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPN-AVLSAVASRSLEKATNFAKANN-----FPPDAKV-YGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~-~~vv~v~d~~~~~~~~~~~~~~-----~~~~~~~-~~~~~e~l~~~~~D~V~i~~ 81 (362)
+||+|||+|.||...+..+....- .+| .++|+++++++.++.+++ .+..+.+ .+++ +.++ +.|+|++++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V-~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~--~aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDY-VFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALA--DADVVISTL 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEE-EEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGT--TCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEE-EEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhC--CCCEEEEec
Confidence 589999999999998888765531 354 589999988887765432 0011233 4676 5555 599999999
Q ss_pred CCccc
Q 018020 82 PTSMH 86 (362)
Q Consensus 82 ~~~~h 86 (362)
+....
T Consensus 78 ~~~~~ 82 (309)
T 1hyh_A 78 GNIKL 82 (309)
T ss_dssp SCGGG
T ss_pred CCccc
Confidence 98764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00028 Score=55.81 Aligned_cols=108 Identities=17% Similarity=0.150 Sum_probs=67.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHh--cCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALL--DDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l--~~~~~D~V~i~~~ 82 (362)
+.+|.|+|+|.+|...+..|.+. +.+++ ++|+++++.+.+.+. +.. .++ ++.+.+- .-.++|+|++++|
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~-g~~V~-~id~~~~~~~~~~~~-~~~---~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAA-GKKVL-AVDKSKEKIELLEDE-GFD---AVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-TCCEE-EEESCHHHHHHHHHT-TCE---EEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHHC-CCc---EEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 45899999999999999999877 67766 678999988877653 432 122 2333332 1247999999999
Q ss_pred CcccHHHHHHHH-HcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAISVA-QKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~~al-~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+......+...+ +.| ..|++- +.+....+. .++.|+...
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~---~~~~~~~~~----l~~~G~~~v 120 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVR---VSSPKKKEE----FEEAGANLV 120 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEE---ESCGGGHHH----HHHTTCSEE
T ss_pred CHHHHHHHHHHHHHhCCceEEEE---EcChhHHHH----HHHcCCCEE
Confidence 765444444333 334 456552 334443333 355666443
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00023 Score=63.86 Aligned_cols=74 Identities=15% Similarity=0.163 Sum_probs=56.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..||++||+|.||...+..+. . +++|+ ++|++++++++..+.+- ...++...+|+++ ++ ++|+|+.++|...
T Consensus 12 ~~~V~vIG~G~MG~~iA~~la-a-G~~V~-v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~--~aDlVieavpe~~ 85 (293)
T 1zej_A 12 HMKVFVIGAGLMGRGIAIAIA-S-KHEVV-LQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VK--DCDIVMEAVFEDL 85 (293)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-T-TSEEE-EECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GG--GCSEEEECCCSCH
T ss_pred CCeEEEEeeCHHHHHHHHHHH-c-CCEEE-EEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-Hc--CCCEEEEcCcCCH
Confidence 468999999999999999998 5 88866 89999999888777620 0001245678876 55 4999999999987
Q ss_pred cH
Q 018020 86 HV 87 (362)
Q Consensus 86 h~ 87 (362)
..
T Consensus 86 ~v 87 (293)
T 1zej_A 86 NT 87 (293)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00061 Score=61.79 Aligned_cols=99 Identities=18% Similarity=0.185 Sum_probs=69.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC---CCcEEEEEEcC-CHHHHHHHHHH---cC-CC--------------CCCccc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITLA---PNAVLSAVASR-SLEKATNFAKA---NN-FP--------------PDAKVY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~---~~~~vv~v~d~-~~~~~~~~~~~---~~-~~--------------~~~~~~--~ 63 (362)
++||||.|+|.+|+..++.+... +++++++|-|. +.+....+.+- +| ++ +...++ .
T Consensus 1 ~ikVaInGfGrIGr~v~r~l~~~~~~~~~evvaInd~~~~~~~a~ll~ydS~hg~f~~~v~~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1obf_O 1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR 80 (335)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred CcEEEEECCCHHHHHHHHHHHhcCCCCCcEEEEEeCCCCHHHHHHHhccCCcCCCCCCCEEEeCCEEEECCEEEEEEEcC
Confidence 37999999999999999988777 79999999996 44434333211 10 00 011222 2
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+.+++ ..+.++|+|+-+|+.....+.+...+++| |-|++--|.
T Consensus 81 dp~~~~w~~~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps 125 (335)
T 1obf_O 81 NPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG 125 (335)
T ss_dssp CGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred CcccCCccccCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcc
Confidence 33443 23347999999999999999999999999 567775553
|
| >2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, structural genomi pathogenic protozoa consortium; HET: NAD AES; 2.25A {Plasmodium falciparum} SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00043 Score=62.92 Aligned_cols=100 Identities=20% Similarity=0.208 Sum_probs=69.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcCCC----CC---------------CcccC-
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANNFP----PD---------------AKVYG- 63 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~~~----~~---------------~~~~~- 63 (362)
|.++||||=|+|.+|+..++++..+|+++|++|-|+ +.+.+..+. +|... ++ ..++.
T Consensus 9 ~~~~kv~INGfGrIGr~v~ra~~~~~~~evvaInd~~~~~~~~a~l~-~yDS~hg~~~~~v~~~~~~l~v~Gk~i~v~~~ 87 (345)
T 2b4r_O 9 MAATKLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLL-KYDSVHGQFPCEVTHADGFLLIGEKKVSVFAE 87 (345)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEESSCEEEEECC
T ss_pred hhheEEEEeCCchHHHHHHHHHhhCCCcEEEEEcCCCCChHHHHHHh-ccCCCCCcCCCCEEEcCCEEEECCEEEEEEEc
Confidence 458999999999999999999888899999999993 555444332 22211 00 01111
Q ss_pred -CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 64 -SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 64 -~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+.+++ ..+.++|+|+-+|+...-.+.+...+++| |.|++.-|-
T Consensus 88 ~dp~~~~w~~~gvDiV~estG~f~s~e~a~~hl~aGakkVVIsaps 133 (345)
T 2b4r_O 88 KDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP 133 (345)
T ss_dssp SSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred CCcccCcccccCCCEEEECcCccccHhhHHHHHHCCCCEEEECCCC
Confidence 22222 11127999999999999999999999999 667776663
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00024 Score=67.09 Aligned_cols=109 Identities=9% Similarity=0.141 Sum_probs=71.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhc-------------CCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLD-------------DKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~-------------~~~~D 75 (362)
-|.-+||+|+||...+..|.+. +++|+ ++|+++++.+.+.+.. .| ..-..++++++ -.+.|
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~-G~~V~-~~D~~~~kv~~L~~g~-~p---i~epgl~~ll~~~~~~g~l~~ttd~~~aD 85 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKH-GVDVL-GVDINQQTIDKLQNGQ-IS---IEEPGLQEVYEEVLSSGKLKVSTTPEASD 85 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHTTC-CS---SCCTTHHHHHHHHHHTTCEEEESSCCCCS
T ss_pred CccEEEeeCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHCCC-CC---cCCCCHHHHHHhhcccCceEEeCchhhCC
Confidence 3678999999999999999877 78876 7899999999886532 21 12233444421 13689
Q ss_pred EEEEcCCCcccH--------HHHH---HH----HHcCCeEEEeCCCCCCHHHHHHHHHHH-HHcCC
Q 018020 76 AVYLPLPTSMHV--------KWAI---SV----AQKKKHLLMEKPMALNVAEFDVILNAC-EENGV 125 (362)
Q Consensus 76 ~V~i~~~~~~h~--------~~~~---~a----l~~gk~V~~EKP~~~~~~~~~~l~~~a-~~~~~ 125 (362)
+|++++|++... ..+. +. ++.| .+++.|- +..+..++++.+.. ++.|.
T Consensus 86 vvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g-~iVV~~S-TV~pgtt~~v~~~i~e~~g~ 149 (431)
T 3ojo_A 86 VFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKG-NTIIVES-TIAPKTMDDFVKPVIENLGF 149 (431)
T ss_dssp EEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTT-EEEEECS-CCCTTHHHHTHHHHHHTTTC
T ss_pred EEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCC-CEEEEec-CCChhHHHHHHHHHHHHcCC
Confidence 999999988742 1222 22 2234 4666665 66777777776654 33553
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.42 E-value=6.3e-05 Score=67.13 Aligned_cols=118 Identities=16% Similarity=0.180 Sum_probs=75.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|+|+|.+|+..+..|.+. ++.-+.|++|+.+++++++++++-...+ ...+++++. .+.|+|+.+||...+.
T Consensus 126 ~k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la~~~~~~~~~-~~~~~~~l~--~~aDiIInaTp~gm~~ 201 (281)
T 3o8q_A 126 GATILLIGAGGAARGVLKPLLDQ-QPASITVTNRTFAKAEQLAELVAAYGEV-KAQAFEQLK--QSYDVIINSTSASLDG 201 (281)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHHHGGGSCE-EEEEGGGCC--SCEEEEEECSCCCC--
T ss_pred CCEEEEECchHHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhccCCe-eEeeHHHhc--CCCCEEEEcCcCCCCC
Confidence 45899999999999999999876 6533558999999999999887521011 123556654 4699999999987654
Q ss_pred HH---HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEeeec
Q 018020 88 KW---AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDGTMW 133 (362)
Q Consensus 88 ~~---~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~~~~ 133 (362)
+. -...++.| .++++ +..++.+. .+++.|++.|+. +.-|...
T Consensus 202 ~~~~l~~~~l~~~-~~V~D--lvY~P~~T-~ll~~A~~~G~~~~~~Gl~M 247 (281)
T 3o8q_A 202 ELPAIDPVIFSSR-SVCYD--MMYGKGYT-VFNQWARQHGCAQAIDGLGM 247 (281)
T ss_dssp --CSCCGGGEEEE-EEEEE--SCCCSSCC-HHHHHHHHTTCSEEECTHHH
T ss_pred CCCCCCHHHhCcC-CEEEE--ecCCCccC-HHHHHHHHCCCCEEECcHHH
Confidence 31 11223333 34455 33443333 356788888876 6655433
|
| >2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0002 Score=65.12 Aligned_cols=98 Identities=21% Similarity=0.239 Sum_probs=68.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHHH---cC-CC--------------CCCcccC--CHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAKA---NN-FP--------------PDAKVYG--SYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~~---~~-~~--------------~~~~~~~--~~~ 66 (362)
++||||.|+|.+|+..++.+...|++++++|-|. +.+....+.+- +| ++ +...++. +.+
T Consensus 2 ~ikV~InGfGrIGr~v~r~l~~~~~~evvaInd~~~~~~~a~ll~yDs~hG~~~~~v~~~~~~l~v~Gk~i~v~~~~dp~ 81 (342)
T 2ep7_A 2 AIKVGINGFGRIGRSFFRASWGREEIEIVAINDLTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIVVDGKEIKVFAQKDPS 81 (342)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTCTTCEEEEEECSSCHHHHHHHHHEETTTEECSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHhhhhhcccccccCCCcEEEcCCEEEECCEEEEEEEcCChh
Confidence 4799999999999999999888889999999996 45544333221 11 00 0011221 222
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKP 105 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP 105 (362)
++ ..+.++|+|+-+|+.....+.+...+++| |.|++.-|
T Consensus 82 ~~~w~~~gvDiV~estG~~~s~e~a~~hl~aGakkVvisap 122 (342)
T 2ep7_A 82 QIPWGDLGVDVVIEATGVFRDRENASKHLQGGAKKVIITAP 122 (342)
T ss_dssp GCCHHHHTCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSC
T ss_pred hCCccccCCCEEEECCCchhhhhhhHHHHhcCCCEEEecCC
Confidence 22 11127999999999999999999999999 67887766
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00029 Score=63.88 Aligned_cols=67 Identities=22% Similarity=0.161 Sum_probs=53.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++.. .+.++|. . +.++++++.. .|+|++++|...
T Consensus 142 g~~vgIIG~G~IG~~~A~~l~~~-G~~V~-~~d~~~~~~--~~~~~g~----~-~~~l~ell~~--aDvVvl~~P~~~ 208 (313)
T 2ekl_A 142 GKTIGIVGFGRIGTKVGIIANAM-GMKVL-AYDILDIRE--KAEKINA----K-AVSLEELLKN--SDVISLHVTVSK 208 (313)
T ss_dssp TCEEEEESCSHHHHHHHHHHHHT-TCEEE-EECSSCCHH--HHHHTTC----E-ECCHHHHHHH--CSEEEECCCCCT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCEEE-EECCCcchh--HHHhcCc----e-ecCHHHHHhh--CCEEEEeccCCh
Confidence 46899999999999999999877 68866 788887654 2456664 2 3589999985 999999999643
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.38 E-value=9.5e-05 Score=66.08 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=79.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
.-++.|+|+|.+|+..+..+.+. ++.-+.|++|+.+++++++++++.. ..+..+ +++++.+.. .|+|+.+||
T Consensus 127 ~k~vlVlGaGG~g~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~--~DiVInaTp 203 (283)
T 3jyo_A 127 LDSVVQVGAGGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA--ADGVVNATP 203 (283)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH--SSEEEECSS
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc--CCEEEECCC
Confidence 34799999999999999988877 6643558999999999888776310 011223 377777775 899999999
Q ss_pred CcccH----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 83 TSMHV----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 83 ~~~h~----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
...+. ++-...++.+ ++++| +..++.+ -.+++.|++.|+++.-|.....
T Consensus 204 ~Gm~~~~~~pi~~~~l~~~-~~v~D--lvY~P~~-T~ll~~A~~~G~~~~~Gl~MLv 256 (283)
T 3jyo_A 204 MGMPAHPGTAFDVSCLTKD-HWVGD--VVYMPIE-TELLKAARALGCETLDGTRMAI 256 (283)
T ss_dssp TTSTTSCSCSSCGGGCCTT-CEEEE--CCCSSSS-CHHHHHHHHHTCCEECTHHHHH
T ss_pred CCCCCCCCCCCCHHHhCCC-CEEEE--ecCCCCC-CHHHHHHHHCcCeEeCcHHHHH
Confidence 65442 1222334444 34444 3333322 3466778888888776654443
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0001 Score=67.88 Aligned_cols=91 Identities=15% Similarity=0.244 Sum_probs=62.5
Q ss_pred CceeEEEEEe-ccHHHHHHHHHHhcCC-----CcEEEEEEcCCHHHHHHHHHHcC-CC--CCCccc-CCHHHHhcCCCCc
Q 018020 6 QAAIRFGIIG-AADIARKLSRAITLAP-----NAVLSAVASRSLEKATNFAKANN-FP--PDAKVY-GSYEALLDDKDID 75 (362)
Q Consensus 6 ~~~~~v~iiG-~G~~g~~~~~~~~~~~-----~~~vv~v~d~~~~~~~~~~~~~~-~~--~~~~~~-~~~~e~l~~~~~D 75 (362)
|+++||+|+| +|.+|...++.|.++| .++++++.++... .+.+...+. +. ....+. .+.++ +. ++|
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~a-gk~~~~~~~~l~~~~~~~~~~~~~~~-~~--~~D 82 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSA-GSTLGEHHPHLTPLAHRVVEPTEAAV-LG--GHD 82 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCT-TSBGGGTCTTCGGGTTCBCEECCHHH-HT--TCS
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcC-CCchhhhcccccccceeeeccCCHHH-hc--CCC
Confidence 4468999999 7999999999999999 8999999875421 111111110 00 011111 13333 43 599
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCeEE
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~V~ 101 (362)
+|+.|+|.....+++..+ ++|+.|+
T Consensus 83 vVf~alg~~~s~~~~~~~-~~G~~vI 107 (352)
T 2nqt_A 83 AVFLALPHGHSAVLAQQL-SPETLII 107 (352)
T ss_dssp EEEECCTTSCCHHHHHHS-CTTSEEE
T ss_pred EEEECCCCcchHHHHHHH-hCCCEEE
Confidence 999999999999999999 9997655
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00018 Score=58.15 Aligned_cols=108 Identities=12% Similarity=0.138 Sum_probs=68.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~ 81 (362)
...+|+|+|+|.+|...+..|.+. +.+++ ++|+++++++.+.++.|.. .+. .+.+.+.+ -.++|+|++++
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~-g~~V~-vid~~~~~~~~~~~~~g~~---~~~~d~~~~~~l~~~~~~~ad~Vi~~~ 92 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSS-GHSVV-VVDKNEYAFHRLNSEFSGF---TVVGDAAEFETLKECGMEKADMVFAFT 92 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCGGGGGGSCTTCCSE---EEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHhcCCCc---EEEecCCCHHHHHHcCcccCCEEEEEe
Confidence 357999999999999999999876 56766 6788888776554234431 121 23333322 13689999999
Q ss_pred CCcccHHHHHHHHHc--C-CeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 82 PTSMHVKWAISVAQK--K-KHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 82 ~~~~h~~~~~~al~~--g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
++..-...+...++. + ..+++. ..+....+ ..++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~iv~~---~~~~~~~~----~l~~~G~~ 133 (155)
T 2g1u_A 93 NDDSTNFFISMNARYMFNVENVIAR---VYDPEKIK----IFEENGIK 133 (155)
T ss_dssp SCHHHHHHHHHHHHHTSCCSEEEEE---CSSGGGHH----HHHTTTCE
T ss_pred CCcHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHH----HHHHCCCc
Confidence 997766666666654 4 344442 33333332 34446766
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00097 Score=63.02 Aligned_cols=73 Identities=10% Similarity=0.056 Sum_probs=50.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----------------CCCcccCCHHHHhc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----------------PDAKVYGSYEALLD 70 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----------------~~~~~~~~~~e~l~ 70 (362)
++-+|+|||+|++|...+-.+.+. +++|+ .+|.++++.+.+.+-. .| ....+.+|.++.++
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~~-G~~V~-g~Did~~kV~~ln~G~-~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~ 96 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFALL-GHRVV-GYDVNPSIVERLRAGR-PHIYEPGLEEALGRALSSGRLSFAESAEEAVA 96 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-TCEEE-EECSCHHHHHHHHTTC-CSSCCTTHHHHHHHHHHTTCEEECSSHHHHHH
T ss_pred CCCEEEEEccCHHHHHHHHHHHhC-CCcEE-EEECCHHHHHHHHCCC-CCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHh
Confidence 356899999999999888888766 67877 5799999887764310 00 01234667778777
Q ss_pred CCCCcEEEEcCCCc
Q 018020 71 DKDIDAVYLPLPTS 84 (362)
Q Consensus 71 ~~~~D~V~i~~~~~ 84 (362)
. .|+++||.|++
T Consensus 97 ~--ad~~~I~VpTP 108 (444)
T 3vtf_A 97 A--TDATFIAVGTP 108 (444)
T ss_dssp T--SSEEEECCCCC
T ss_pred c--CCceEEEecCC
Confidence 5 67777665543
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0002 Score=63.67 Aligned_cols=115 Identities=17% Similarity=0.241 Sum_probs=73.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+++|+|+|.+|...+..+.+.. .+|+ +++|+.+++++++++++....+. ..+++++.+ .++|+|+.++|...+.
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G-~~V~-v~~R~~~~~~~la~~~~~~~~~~-~~~~~~~~~-~~~DivVn~t~~~~~~ 194 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLD-CAVT-ITNRTVSRAEELAKLFAHTGSIQ-ALSMDELEG-HEFDLIINATSSGISG 194 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-CEEE-EECSSHHHHHHHHHHTGGGSSEE-ECCSGGGTT-CCCSEEEECCSCGGGT
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CEEE-EEECCHHHHHHHHHHhhccCCee-EecHHHhcc-CCCCEEEECCCCCCCC
Confidence 357999999999999999998874 6655 88999999999988875210111 234455543 4799999999976652
Q ss_pred H---HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEe
Q 018020 88 K---WAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDG 130 (362)
Q Consensus 88 ~---~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~ 130 (362)
. +-...++.|. ++++ +..+..+. .+.+.+++.|.. +.-|
T Consensus 195 ~~~~i~~~~l~~~~-~v~D--~~y~p~~t-~~~~~a~~~G~~~~~~G 237 (271)
T 1nyt_A 195 DIPAIPSSLIHPGI-YCYD--MFYQKGKT-PFLAWCEQRGSKRNADG 237 (271)
T ss_dssp CCCCCCGGGCCTTC-EEEE--SCCCSSCC-HHHHHHHHTTCCEEECT
T ss_pred CCCCCCHHHcCCCC-EEEE--eccCCcCC-HHHHHHHHcCCCeecCC
Confidence 1 1112233443 4444 33333222 356778888876 5444
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00051 Score=62.43 Aligned_cols=79 Identities=10% Similarity=0.134 Sum_probs=55.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---------CCCcccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---------PDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~e~l~~~~~D~V 77 (362)
.++||+|||+|.||..++..|.+. +.+|. ++ +++++++.+.++ |+. ..+...++.+++ . +.|+|
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~-G~~V~-l~-~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~v 90 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARA-GHEVI-LI-ARPQHVQAIEAT-GLRLETQSFDEQVKVSASSDPSAV-Q--GADLV 90 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHT-TCEEE-EE-CCHHHHHHHHHH-CEEEECSSCEEEECCEEESCGGGG-T--TCSEE
T ss_pred cCCcEEEECcCHHHHHHHHHHHHC-CCeEE-EE-EcHhHHHHHHhC-CeEEEcCCCcEEEeeeeeCCHHHc-C--CCCEE
Confidence 468999999999999999998776 56766 45 778888887664 211 112345666553 3 69999
Q ss_pred EEcCCCcccHHHHHH
Q 018020 78 YLPLPTSMHVKWAIS 92 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~ 92 (362)
++++|+....+.+..
T Consensus 91 ilavk~~~~~~~l~~ 105 (318)
T 3hwr_A 91 LFCVKSTDTQSAALA 105 (318)
T ss_dssp EECCCGGGHHHHHHH
T ss_pred EEEcccccHHHHHHH
Confidence 999999855544443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00027 Score=64.77 Aligned_cols=67 Identities=24% Similarity=0.336 Sum_probs=53.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.++|||||+|.||...+..++.. +++|+ ++|++++. ..+.++|+ . +.++++++.. .|+|++++|...
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~--~~~~~~g~----~-~~~l~~~l~~--aDvVil~vp~~~ 216 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGF-NMRIL-YYSRTRKE--EVERELNA----E-FKPLEDLLRE--SDFVVLAVPLTR 216 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCH--HHHHHHCC----E-ECCHHHHHHH--CSEEEECCCCCT
T ss_pred CCEEEEEccCHHHHHHHHHHHhC-CCEEE-EECCCcch--hhHhhcCc----c-cCCHHHHHhh--CCEEEECCCCCh
Confidence 46899999999999999999876 67865 78888765 33445564 2 4689999985 899999999865
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=9.5e-06 Score=72.26 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=73.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-++.|||+|.+|+..+..|.+. ++.-+.|++|+.+++++++++... ..++++.+.+. +.|+|+.+||...+.
T Consensus 117 ~k~vlvlGaGg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la~~~~~----~~~~~~~~~~~--~aDiVInaTp~Gm~~ 189 (277)
T 3don_A 117 DAYILILGAGGASKGIANELYKI-VRPTLTVANRTMSRFNNWSLNINK----INLSHAESHLD--EFDIIINTTPAGMNG 189 (277)
T ss_dssp GCCEEEECCSHHHHHHHHHHHTT-CCSCCEEECSCGGGGTTCCSCCEE----ECHHHHHHTGG--GCSEEEECCC-----
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHhccc----ccHhhHHHHhc--CCCEEEECccCCCCC
Confidence 35799999999999999999876 563345899999888776653321 22445555555 489999999976543
Q ss_pred HH----HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 88 KW----AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 88 ~~----~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
.. -...++.+ .++++ +..++.+ ..+++.|++.|+.+.-|.....
T Consensus 190 ~~~~~l~~~~l~~~-~~V~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~MLv 237 (277)
T 3don_A 190 NTDSVISLNRLASH-TLVSD--IVYNPYK-TPILIEAEQRGNPIYNGLDMFV 237 (277)
T ss_dssp --CCSSCCTTCCSS-CEEEE--SCCSSSS-CHHHHHHHHTTCCEECTHHHHH
T ss_pred CCcCCCCHHHcCCC-CEEEE--ecCCCCC-CHHHHHHHHCcCEEeCCHHHHH
Confidence 21 11223333 45555 3333333 2578889999988876654433
|
| >1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0025 Score=58.22 Aligned_cols=209 Identities=11% Similarity=0.097 Sum_probs=131.4
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEE-cCCHHHHHHHHHHcCCCCCCcccCC--------------------
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPN-AVLSAVA-SRSLEKATNFAKANNFPPDAKVYGS-------------------- 64 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~-d~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 64 (362)
+-+|.|+|. |+||..-+..++++|+ ++|+++. .++.+.+.+.+++|+.. ..+..|
T Consensus 9 ~k~i~ILGSTGSIGtqtLdVi~~~pd~f~V~aL~ag~nv~~L~~q~~~f~p~--~v~v~d~~~~~~L~~~l~~~~~~~~v 86 (406)
T 1q0q_A 9 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPR--YAVMDDEASAKLLKTMLQQQGSRTEV 86 (406)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCS--EEEESSHHHHHHHHHHHHHTTCCCEE
T ss_pred ceeEEEEccCcHHHHHHHHHHHhCCCccEEEEEEcCCCHHHHHHHHHHhCCC--EEEEcCHHHHHHHHHHhhcCCCCcEE
Confidence 468999995 9999999999999986 9999975 56777777777777622 122211
Q ss_pred ------HHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC-HHHHHHHHHHHHHcCCEEEEeeecccCh
Q 018020 65 ------YEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALN-VAEFDVILNACEENGVQLMDGTMWVHNP 137 (362)
Q Consensus 65 ------~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~-~~~~~~l~~~a~~~~~~~~v~~~~r~~p 137 (362)
+.++...+++|.|+.+..-..-..-...|+++||.|.+--- .+ +....=+.++++++|..+.. -..
T Consensus 87 ~~G~~~l~~~a~~~~~D~Vv~AIvG~aGL~PTlaAi~aGK~iaLANK--EsLV~aG~lv~~~a~~~~~~ilP-----VDS 159 (406)
T 1q0q_A 87 LSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANK--ESLVTCGRLFMDAVKQSKAQLLP-----VDS 159 (406)
T ss_dssp EESHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEECCH--HHHHHHTHHHHHHHHHHTCEEEE-----CSH
T ss_pred EeCHHHHHHHhcCCCCCEEEEccccHhHHHHHHHHHHCCCeEEEech--HHHHhchHHHHHHHHHcCCeEEE-----ecc
Confidence 22444556799999999999999999999999999987311 12 33445567788888988763 344
Q ss_pred hHHHHHHhh----cCC--C---CccceEEEEEEeeecCCcccc--------------cCccCcCCCCCCCcccccccc--
Q 018020 138 RTAQMKEFV----SDP--Q---RFGQLRTMHSCFSFAGDAEFL--------------KNDIRVKPDLDGLGALGDAGW-- 192 (362)
Q Consensus 138 ~~~~~k~~i----~~~--g---~iG~i~~i~~~~~~~~~~~~~--------------~~~w~~~~~~~ggg~l~~~g~-- 192 (362)
....+-+++ ... + ...+|..+-..-+..+...+. ..+|..- ..+-.|-.+
T Consensus 160 EHsAIfQ~L~~~~~g~~~~~~~~~~~V~kiiLTASGGPFR~~~~e~L~~vT~eqAl~HPnWsMG-----~KITIDSATmm 234 (406)
T 1q0q_A 160 EHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMG-----RKISVDSATMM 234 (406)
T ss_dssp HHHHHHHTSCHHHHTTTTTSCTGGGTEEEEEEEECCCTTTTSCGGGGGGCCHHHHHCCSSCCCC-----HHHHHHHHHTH
T ss_pred hHHHHHHHcccccCCccccccCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCccCC-----CeeeehHHhHH
Confidence 555566665 211 0 224577766655433221110 1223221 012111110
Q ss_pred -hHHHH--HHHHccCCCCcEEEEeeccccCCCCeeEeeEEEEEeCCCcE
Q 018020 193 -YGIRS--ILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRV 238 (362)
Q Consensus 193 -h~id~--~~~l~g~~~~~~V~a~~~~~~~~~~~~d~~~~~~~~~~G~~ 238 (362)
-.+.+ ..||||. +++++.....+ ....+.+++|.||.+
T Consensus 235 NKGLEvIEA~~LF~~-~~d~I~VvVHP-------QSiIHSmVef~DGSv 275 (406)
T 1q0q_A 235 NKGLEYIEARWLFNA-SASQMEVLIHP-------QSVIHSMVRYQDGSV 275 (406)
T ss_dssp HHHHHHHHHHHHHTC-CGGGEEEEECT-------TCCEEEEEEETTSCE
T ss_pred hhhHHHHHHHHHcCC-CHHHeEEEECC-------CCceeEEEEEcCCcE
Confidence 12333 4899995 46777777432 225688999999976
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00027 Score=65.11 Aligned_cols=69 Identities=20% Similarity=0.192 Sum_probs=53.0
Q ss_pred eeEEEEEeccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.||...+..++ .. +++|+ ++|+++++.+. +.++|+ ...++++++++. .|+|++++|...
T Consensus 163 g~~vgIIG~G~IG~~vA~~l~~~~-G~~V~-~~d~~~~~~~~-~~~~g~----~~~~~l~ell~~--aDvVil~vp~~~ 232 (348)
T 2w2k_A 163 GHVLGAVGLGAIQKEIARKAVHGL-GMKLV-YYDVAPADAET-EKALGA----ERVDSLEELARR--SDCVSVSVPYMK 232 (348)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTT-CCEEE-EECSSCCCHHH-HHHHTC----EECSSHHHHHHH--CSEEEECCCCSG
T ss_pred CCEEEEEEECHHHHHHHHHHHHhc-CCEEE-EECCCCcchhh-HhhcCc----EEeCCHHHHhcc--CCEEEEeCCCCh
Confidence 358999999999999999998 66 68866 68887654443 234454 344689999985 999999999864
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00036 Score=64.16 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=52.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|+++...+. +.+.|+ ..+++++++++. .|+|++++|..
T Consensus 164 gktvGIIG~G~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~-~~~~g~----~~~~~l~ell~~--aDvV~l~~Plt 231 (351)
T 3jtm_A 164 GKTIGTVGAGRIGKLLLQRLKPF-GCNLL-YHDRLQMAPEL-EKETGA----KFVEDLNEMLPK--CDVIVINMPLT 231 (351)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-CCEEE-EECSSCCCHHH-HHHHCC----EECSCHHHHGGG--CSEEEECSCCC
T ss_pred CCEEeEEEeCHHHHHHHHHHHHC-CCEEE-EeCCCccCHHH-HHhCCC----eEcCCHHHHHhc--CCEEEECCCCC
Confidence 46899999999999999999877 78855 68887533333 334454 456799999986 99999999964
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00044 Score=63.66 Aligned_cols=67 Identities=24% Similarity=0.257 Sum_probs=52.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++... ..+.+.|+ ...++++++++. .|+|++++|..
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~~~~~g~----~~~~~l~ell~~--aDiV~l~~Plt 226 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAF-GMNVL-VWGRENSK--ERARADGF----AVAESKDALFEQ--SDVLSVHLRLN 226 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSHHHH--HHHHHTTC----EECSSHHHHHHH--CSEEEECCCCS
T ss_pred CCEEEEEeECHHHHHHHHHHHhC-CCEEE-EECCCCCH--HHHHhcCc----eEeCCHHHHHhh--CCEEEEeccCc
Confidence 46899999999999999999877 78876 68887532 23445554 456799999986 89999999864
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=8.9e-05 Score=68.08 Aligned_cols=86 Identities=9% Similarity=0.143 Sum_probs=60.8
Q ss_pred eeEEEEEe-ccHHHHHHHHHHh--cCCCcEEEEEEcCCHHHHHHHHHHc-CCCCCCcccCCHH-HHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIG-AADIARKLSRAIT--LAPNAVLSAVASRSLEKATNFAKAN-NFPPDAKVYGSYE-ALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~--~~~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~ 82 (362)
++||+|+| +|.+|+..++.|. .+|.++++++.++.... +.+. + +. ... +.+.+ +.+ .++|+|+.|+|
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g-~~~~--~~g~--~i~-~~~~~~~~~--~~~DvV~~a~g 77 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG-QRMG--FAES--SLR-VGDVDSFDF--SSVGLAFFAAA 77 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT-CEEE--ETTE--EEE-CEEGGGCCG--GGCSEEEECSC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCC-Cccc--cCCc--ceE-EecCCHHHh--cCCCEEEEcCC
Confidence 58999999 7999999999887 78999999998754210 0000 1 10 011 12221 112 36999999999
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
...+.+++..++++|..|+
T Consensus 78 ~~~s~~~a~~~~~aG~kvI 96 (340)
T 2hjs_A 78 AEVSRAHAERARAAGCSVI 96 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHHCCCEEE
Confidence 9999999999999997655
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00037 Score=63.39 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=52.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.||+..++.++.. +++|+ ++|+ +++.. .+.++|+ ...++++++++. .|+|++++|..
T Consensus 146 g~~vgIIG~G~IG~~~A~~l~~~-G~~V~-~~d~~~~~~~--~~~~~g~----~~~~~l~ell~~--aDvVil~~p~~ 213 (320)
T 1gdh_A 146 NKTLGIYGFGSIGQALAKRAQGF-DMDID-YFDTHRASSS--DEASYQA----TFHDSLDSLLSV--SQFFSLNAPST 213 (320)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECSSCCCHH--HHHHHTC----EECSSHHHHHHH--CSEEEECCCCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCCcChh--hhhhcCc----EEcCCHHHHHhh--CCEEEEeccCc
Confidence 46899999999999999999876 68866 7888 76542 3445564 345589999985 99999999965
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0022 Score=58.13 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=70.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcCCC----CC---------------Cccc--C
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANNFP----PD---------------AKVY--G 63 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~~~----~~---------------~~~~--~ 63 (362)
+++||||.|+|.||+..++.+...+ +++++|.|+ +.+.+..+- +|+.. ++ +.++ .
T Consensus 6 ~~~kvgInGFGRIGrlv~R~~~~~~-veivainDp~~d~~~~a~l~-~yDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~ 83 (346)
T 3h9e_O 6 RELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMF-KYDSTHGRYKGSVEFRNGQLVVDNHEISVYQCK 83 (346)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEECTTCCHHHHHHHH-HCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CeeEEEEECCChHHHHHHHHHHhCC-CEEEEEeCCCCChhHhcccc-cccCCCCCCCCcEEEcCCEEEECCEEEEEEecC
Confidence 5799999999999998888877665 999999996 555554442 23211 00 1111 1
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+.+++ ..+.++|+|+-+|......+.+...+++| |.|++.-|-
T Consensus 84 dp~~i~W~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps 128 (346)
T 3h9e_O 84 EPKQIPWRAVGSPYVVESTGVYLSIQAASDHISAGAQRVVISAPS 128 (346)
T ss_dssp SGGGCCGGGGTSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred ChhhCCcccccccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence 23332 12237999999999999999999999999 789988874
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00037 Score=63.88 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=63.5
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCccc-CCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVY-GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.++||||||+ |..|..+++.|.++|.++|+.+.+++ ..-+.+.+-+. +..+..+. .+.+++++ ++|+|+.|+|.
T Consensus 12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~-~aG~~~~~~~p~~~~~l~~~~~~~~~~~~--~~Dvvf~alp~ 88 (351)
T 1vkn_A 12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRT-YAGKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPA 88 (351)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECST-TTTSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCST
T ss_pred ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcc-cccCChHHhChhhccCceEEeCCHHHhhc--CCCEEEECCCc
Confidence 4799999996 88999999999999999999988753 22333332211 00111121 24555544 49999999999
Q ss_pred cccHHHHHHHHHcCCeEE
Q 018020 84 SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~ 101 (362)
....+++..+ +|..|+
T Consensus 89 ~~s~~~~~~~--~g~~VI 104 (351)
T 1vkn_A 89 GASYDLVREL--KGVKII 104 (351)
T ss_dssp THHHHHHTTC--CSCEEE
T ss_pred HHHHHHHHHh--CCCEEE
Confidence 9999999888 776655
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00073 Score=61.81 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=48.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..+..++.. +++|+ ++|++++. ..+ ...+.+++++++. .|+|++++|..
T Consensus 171 gktiGIIGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~------~~~----~~~~~sl~ell~~--aDvVil~vP~t 233 (340)
T 4dgs_A 171 GKRIGVLGLGQIGRALASRAEAF-GMSVR-YWNRSTLS------GVD----WIAHQSPVDLARD--SDVLAVCVAAS 233 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECSSCCT------TSC----CEECSSHHHHHHT--CSEEEECC---
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcCCccc------ccC----ceecCCHHHHHhc--CCEEEEeCCCC
Confidence 36899999999999999999876 78866 78887643 112 2457899999986 99999999953
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0008 Score=52.94 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=64.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc---cCCHHHHhc--CCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV---YGSYEALLD--DKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~e~l~--~~~~D~V~i~~~~ 83 (362)
.+|+|+|+|.+|...+..+.+. +.+++ ++|+++++.+.+.+. +.. .+ ..+.+.+.+ ..++|+|++++++
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~~-g~~v~-~~d~~~~~~~~~~~~-~~~---~~~~d~~~~~~l~~~~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHRM-GHEVL-AVDINEEKVNAYASY-ATH---AVIANATEENELLSLGIRNFEYVIVAIGA 80 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-TCCCE-EEESCHHHHHTTTTT-CSE---EEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHh-CCE---EEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence 4699999999999999999876 46655 678888877655432 221 11 234444332 2469999999998
Q ss_pred ccc--HHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 84 SMH--VKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 84 ~~h--~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
..+ ..++..+.+.| +++++ .+.+....+ ..++.|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~ii~---~~~~~~~~~----~l~~~g~~~ 120 (144)
T 2hmt_A 81 NIQASTLTTLLLKELDIPNIWV---KAQNYYHHK----VLEKIGADR 120 (144)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEE---ECCSHHHHH----HHHHHTCSE
T ss_pred chHHHHHHHHHHHHcCCCeEEE---EeCCHHHHH----HHHHcCCCE
Confidence 633 34444455566 34554 344555433 234456543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00046 Score=63.07 Aligned_cols=63 Identities=29% Similarity=0.355 Sum_probs=50.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.||+..+..++.. +++|+ ++|++++... + ...+.+++++++. .|+|++++|..
T Consensus 164 g~~vgIIG~G~iG~~vA~~l~~~-G~~V~-~~dr~~~~~~------g----~~~~~~l~ell~~--aDvVil~vP~~ 226 (333)
T 3ba1_A 164 GKRVGIIGLGRIGLAVAERAEAF-DCPIS-YFSRSKKPNT------N----YTYYGSVVELASN--SDILVVACPLT 226 (333)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTT-TCCEE-EECSSCCTTC------C----SEEESCHHHHHHT--CSEEEECSCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EECCCchhcc------C----ceecCCHHHHHhc--CCEEEEecCCC
Confidence 45899999999999999999876 67765 6888765321 3 2457899999985 99999999985
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00032 Score=64.50 Aligned_cols=67 Identities=16% Similarity=0.158 Sum_probs=52.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++.+.. .+.++|. ..+.+++++++. .|+|++++|..
T Consensus 168 g~tvGIIG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~--~~~~~g~----~~~~~l~ell~~--aDvV~l~~P~t 234 (347)
T 1mx3_A 168 GETLGIIGLGRVGQAVALRAKAF-GFNVL-FYDPYLSDG--VERALGL----QRVSTLQDLLFH--SDCVTLHCGLN 234 (347)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECTTSCTT--HHHHHTC----EECSSHHHHHHH--CSEEEECCCCC
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-CCEEE-EECCCcchh--hHhhcCC----eecCCHHHHHhc--CCEEEEcCCCC
Confidence 46899999999999999999876 78876 688865432 2345564 356689999985 99999999975
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00066 Score=62.05 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=53.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++.+.. .+.++|+. +.+++++++. .|+|++++|...
T Consensus 165 g~tvgIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~--~~~~~g~~-----~~~l~ell~~--aDvV~l~~P~t~ 231 (335)
T 2g76_A 165 GKTLGILGLGRIGREVATRMQSF-GMKTI-GYDPIISPE--VSASFGVQ-----QLPLEEIWPL--CDFITVHTPLLP 231 (335)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECSSSCHH--HHHHTTCE-----ECCHHHHGGG--CSEEEECCCCCT
T ss_pred cCEEEEEeECHHHHHHHHHHHHC-CCEEE-EECCCcchh--hhhhcCce-----eCCHHHHHhc--CCEEEEecCCCH
Confidence 45899999999999999999876 68876 688876542 34566642 4589999985 999999999864
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0005 Score=62.14 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=52.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++. + .+.++|+. +.+++++++. .|+|++++|...
T Consensus 142 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~d~~~~~-~-~~~~~g~~-----~~~l~ell~~--aDvV~l~~p~~~ 208 (307)
T 1wwk_A 142 GKTIGIIGFGRIGYQVAKIANAL-GMNIL-LYDPYPNE-E-RAKEVNGK-----FVDLETLLKE--SDVVTIHVPLVE 208 (307)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCH-H-HHHHTTCE-----ECCHHHHHHH--CSEEEECCCCST
T ss_pred CceEEEEccCHHHHHHHHHHHHC-CCEEE-EECCCCCh-h-hHhhcCcc-----ccCHHHHHhh--CCEEEEecCCCh
Confidence 46899999999999999999877 68866 78887765 2 34566642 3489999985 999999999753
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00041 Score=63.59 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=51.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|+++...+.. .+. ...++++++++. .|+|++++|..
T Consensus 173 gktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~---~g~----~~~~~l~ell~~--sDvV~l~~Plt 238 (345)
T 4g2n_A 173 GRRLGIFGMGRIGRAIATRARGF-GLAIH-YHNRTRLSHALE---EGA----IYHDTLDSLLGA--SDIFLIAAPGR 238 (345)
T ss_dssp TCEEEEESCSHHHHHHHHHHHTT-TCEEE-EECSSCCCHHHH---TTC----EECSSHHHHHHT--CSEEEECSCCC
T ss_pred CCEEEEEEeChhHHHHHHHHHHC-CCEEE-EECCCCcchhhh---cCC----eEeCCHHHHHhh--CCEEEEecCCC
Confidence 35899999999999999999877 78876 588875332221 142 455799999986 99999999964
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0029 Score=56.86 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=64.8
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.||+||| +|.||..++..+.+. +.+|. ++|++++ .+.++.+.. .|+|++++|+..-.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~-G~~V~-~~~~~~~------------------~~~~~~~~~--aDvVilavp~~~~~ 79 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS-GYPIS-ILDREDW------------------AVAESILAN--ADVVIVSVPINLTL 79 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT-TCCEE-EECTTCG------------------GGHHHHHTT--CSEEEECSCGGGHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC-CCeEE-EEECCcc------------------cCHHHHhcC--CCEEEEeCCHHHHH
Confidence 4899999 999999999999876 56655 6787653 156677764 99999999998877
Q ss_pred HHHHHHHHc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 88 KWAISVAQK--KKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 88 ~~~~~al~~--gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
+++...... ...+++.. -+......+++.+. .+..++.+++
T Consensus 80 ~vl~~l~~~l~~~~iv~~~-~svk~~~~~~~~~~---~~~~~v~~hP 122 (298)
T 2pv7_A 80 ETIERLKPYLTENMLLADL-TSVKREPLAKMLEV---HTGAVLGLHP 122 (298)
T ss_dssp HHHHHHGGGCCTTSEEEEC-CSCCHHHHHHHHHH---CSSEEEEEEE
T ss_pred HHHHHHHhhcCCCcEEEEC-CCCCcHHHHHHHHh---cCCCEEeeCC
Confidence 666654322 12366653 23344444444433 3455665554
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00037 Score=63.89 Aligned_cols=76 Identities=18% Similarity=0.245 Sum_probs=52.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---------CCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---------PDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
.+||+|||+|.||..++..|.+. +.+|. +++++ ++.+.+.+ .|+. ..+...++++++ . +.|+|+
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~-g~~V~-~~~r~-~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~-~--~~D~Vi 75 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALA-GEAIN-VLARG-ATLQALQT-AGLRLTEDGATHTLPVRATHDAAAL-G--EQDVVI 75 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHT-TCCEE-EECCH-HHHHHHHH-TCEEEEETTEEEEECCEEESCHHHH-C--CCSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EEECh-HHHHHHHH-CCCEEecCCCeEEEeeeEECCHHHc-C--CCCEEE
Confidence 58999999999999999988776 45655 67775 55665543 3431 012345688774 3 599999
Q ss_pred EcCCCcccHHHH
Q 018020 79 LPLPTSMHVKWA 90 (362)
Q Consensus 79 i~~~~~~h~~~~ 90 (362)
+++|+....+.+
T Consensus 76 lavk~~~~~~~~ 87 (335)
T 3ghy_A 76 VAVKAPALESVA 87 (335)
T ss_dssp ECCCHHHHHHHH
T ss_pred EeCCchhHHHHH
Confidence 999996544443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0005 Score=64.12 Aligned_cols=68 Identities=21% Similarity=0.216 Sum_probs=52.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|+++...+ .+.++|+ ..+.+++++++. .|+|++++|..
T Consensus 191 gktvGIIGlG~IG~~vA~~l~a~-G~~V~-~~d~~~~~~~-~~~~~G~----~~~~~l~ell~~--aDvV~l~~Plt 258 (393)
T 2nac_A 191 AMHVGTVAAGRIGLAVLRRLAPF-DVHLH-YTDRHRLPES-VEKELNL----TWHATREDMYPV--CDVVTLNCPLH 258 (393)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-TCEEE-EECSSCCCHH-HHHHHTC----EECSSHHHHGGG--CSEEEECSCCC
T ss_pred CCEEEEEeECHHHHHHHHHHHhC-CCEEE-EEcCCccchh-hHhhcCc----eecCCHHHHHhc--CCEEEEecCCc
Confidence 46899999999999999999876 68866 6788754332 3445564 345789999985 99999999964
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0004 Score=63.50 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=51.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.++|||||+|.||...+..+... +++|+ ++|+++++.+.. .++|+ .. .+++++++. .|+|++++|...
T Consensus 155 g~~vgIIG~G~iG~~iA~~l~~~-G~~V~-~~d~~~~~~~~~-~~~g~----~~-~~l~e~l~~--aDvVi~~vp~~~ 222 (330)
T 2gcg_A 155 QSTVGIIGLGRIGQAIARRLKPF-GVQRF-LYTGRQPRPEEA-AEFQA----EF-VSTPELAAQ--SDFIVVACSLTP 222 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-TCCEE-EEESSSCCHHHH-HTTTC----EE-CCHHHHHHH--CSEEEECCCCCT
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCCcchhHH-HhcCc----ee-CCHHHHHhh--CCEEEEeCCCCh
Confidence 46899999999999999999866 67765 678776544433 34553 23 389999875 899999999753
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0014 Score=63.01 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=54.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----------cCCCC---------CCcccCCHHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----------NNFPP---------DAKVYGSYEAL 68 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----------~~~~~---------~~~~~~~~~e~ 68 (362)
..||+|||+|.||...+..+.+. +++|+ ++|++++++++..+. .|.-. .....+|++ .
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a-G~~V~-l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~ 81 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH-GHQVL-LYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-A 81 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-TCCEE-EECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-G
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-H
Confidence 56899999999999999988776 67755 799999988876553 22100 113456775 3
Q ss_pred hcCCCCcEEEEcCCCccc
Q 018020 69 LDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h 86 (362)
++ ++|+|+.++|....
T Consensus 82 ~~--~aDlVIeAVpe~~~ 97 (483)
T 3mog_A 82 LA--AADLVIEAASERLE 97 (483)
T ss_dssp GG--GCSEEEECCCCCHH
T ss_pred hc--CCCEEEEcCCCcHH
Confidence 55 49999999999854
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.24 E-value=6.2e-05 Score=63.81 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=49.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+||+|||+|.||..++..|.+. +.+|+ +++|+++ .+.+.. .++ ... +.+++++. .|+|++++|+..
T Consensus 18 ~~~~I~iIG~G~mG~~la~~L~~~-G~~V~-~~~r~~~-~~~~~~-~g~----~~~-~~~~~~~~--aDvVilav~~~~ 85 (201)
T 2yjz_A 18 KQGVVCIFGTGDFGKSLGLKMLQC-GYSVV-FGSRNPQ-VSSLLP-RGA----EVL-CYSEAASR--SDVIVLAVHREH 85 (201)
Confidence 357899999999999999988766 56655 6788876 444432 343 334 77777764 999999999853
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00086 Score=61.04 Aligned_cols=71 Identities=11% Similarity=0.018 Sum_probs=49.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
++||+|||+|.+|...+..+...+-++ +.++|+++++++..+... +.+..+..++|+ +.+++ .|+|+++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~--aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG--ADVVIVT 79 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT--CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC--CCEEEEe
Confidence 579999999999999888887664447 779999987766433221 222223334777 55664 9999999
Q ss_pred CC
Q 018020 81 LP 82 (362)
Q Consensus 81 ~~ 82 (362)
.+
T Consensus 80 ~g 81 (322)
T 1t2d_A 80 AG 81 (322)
T ss_dssp CS
T ss_pred CC
Confidence 73
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00087 Score=60.91 Aligned_cols=81 Identities=22% Similarity=0.238 Sum_probs=45.2
Q ss_pred CCccCCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-C--CCCccc-CCHHHHhcCCCCc
Q 018020 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-P--PDAKVY-GSYEALLDDKDID 75 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~--~~~~~~-~~~~e~l~~~~~D 75 (362)
|.| +++++||+|||+|++|...+..+...+-+.-+.++|+++++++..+.++. . + ..+++. +++ +.++ +.|
T Consensus 1 ~~m-~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~-~a~~--~aD 76 (318)
T 1y6j_A 1 MEM-VKSRSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY-SDVK--DCD 76 (318)
T ss_dssp -------CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG-GGGT--TCS
T ss_pred CCC-CCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCH-HHhC--CCC
Confidence 444 23468999999999999887777665433335589999887665444432 1 1 112222 333 3344 599
Q ss_pred EEEEcCCCcc
Q 018020 76 AVYLPLPTSM 85 (362)
Q Consensus 76 ~V~i~~~~~~ 85 (362)
+|+++.+.+.
T Consensus 77 vVii~~g~p~ 86 (318)
T 1y6j_A 77 VIVVTAGANR 86 (318)
T ss_dssp EEEECCCC--
T ss_pred EEEEcCCCCC
Confidence 9999887654
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00051 Score=63.58 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=52.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcE-EEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAV-LSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~-vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++ |+ ++|+++...+ .+.++|+ ..+.+++++++. .|+|++++|..
T Consensus 164 g~tvgIIG~G~IG~~vA~~l~~~-G~~~V~-~~d~~~~~~~-~~~~~g~----~~~~~l~ell~~--aDvV~l~~P~t 232 (364)
T 2j6i_A 164 GKTIATIGAGRIGYRVLERLVPF-NPKELL-YYDYQALPKD-AEEKVGA----RRVENIEELVAQ--ADIVTVNAPLH 232 (364)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-CCSEEE-EECSSCCCHH-HHHHTTE----EECSSHHHHHHT--CSEEEECCCCS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCcEEE-EECCCccchh-HHHhcCc----EecCCHHHHHhc--CCEEEECCCCC
Confidence 46899999999999999999876 675 65 6887754333 3345563 345799999985 99999999985
|
| >3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0021 Score=58.06 Aligned_cols=98 Identities=16% Similarity=0.165 Sum_probs=70.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcCCC----CC--Cccc-----------------
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANNFP----PD--AKVY----------------- 62 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~~~----~~--~~~~----------------- 62 (362)
++||||=|+|.||+..++++...+++++|+|-|+ +.+....+- +|+.. ++ ++.-
T Consensus 3 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~-kyDS~hG~f~~~~v~~~~~~~l~i~Gk~I~v~~e 81 (337)
T 3v1y_O 3 KIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMF-KYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGI 81 (337)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTSCHHHHHHHH-HCCTTTCCCCSSCEEEEETTEEEETTEEEEEECC
T ss_pred ceEEEEECCChHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHh-hhccCCCcccCceEEEcCCcEEEECCEEEEEEEe
Confidence 7999999999999998888877788999999997 555554442 23211 11 1111
Q ss_pred CCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 63 GSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 63 ~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
.+++++ ..+.++|+|+-+|......+.+...+++| |.|++.-|.
T Consensus 82 ~dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps 127 (337)
T 3v1y_O 82 RNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS 127 (337)
T ss_dssp SSGGGCCHHHHTCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCC
T ss_pred cCcccCCccccCCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence 112221 11227999999999999999999999999 778887773
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.002 Score=61.53 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=54.0
Q ss_pred eeEEEEEeccHHH--HHHHHHHhcC---CCcEEEEEEcCCHHHHHHHHH-------HcCCCCCCcccCCHHHHhcCCCCc
Q 018020 8 AIRFGIIGAADIA--RKLSRAITLA---PNAVLSAVASRSLEKATNFAK-------ANNFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 8 ~~~v~iiG~G~~g--~~~~~~~~~~---~~~~vv~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~~~e~l~~~~~D 75 (362)
++||+|||+|++| ..++..+... ++.+|+ ++|+++++++...+ ..+.+..+..++|+++.+++ .|
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~-L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d--AD 79 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID--AD 79 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--CS
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEE-EEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC--CC
Confidence 6899999999964 4555555432 355655 99999987664322 23444444556899888875 99
Q ss_pred EEEEcCCCcccHHH
Q 018020 76 AVYLPLPTSMHVKW 89 (362)
Q Consensus 76 ~V~i~~~~~~h~~~ 89 (362)
+|+++.|.......
T Consensus 80 ~VIiaagv~~~~~~ 93 (480)
T 1obb_A 80 FVINTAMVGGHTYL 93 (480)
T ss_dssp EEEECCCTTHHHHH
T ss_pred EEEECCCccccccc
Confidence 99999998654433
|
| >3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0052 Score=55.37 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=72.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcCCC----CC---------------Cccc--CC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANNFP----PD---------------AKVY--GS 64 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~~~----~~---------------~~~~--~~ 64 (362)
++||||=|+|.||+-..+++...+++++|+|-|+ +.+.+..+- +|+.. ++ +.++ .+
T Consensus 1 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaiNd~~~d~~~~a~l~-kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~d 79 (332)
T 3pym_A 1 MVRVAINGFGRIGRLVMRIALSRPNVEVVALNDPFITNDYAAYMF-KYDSTHGRYAGEVSHDDKHIIVDGKKIATYQERD 79 (332)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHSTTCEEEEEECTTCCHHHHHHHH-HCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred CeEEEEECCCcHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHh-cccCCCCCCCCcEEEcCCEEEECCEEEEEEeecc
Confidence 3799999999999988888777788999999997 555554442 23211 00 1122 23
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
++++ ..+.++|+|+-+|......+.+...+++| |.|++.-|.
T Consensus 80 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps 123 (332)
T 3pym_A 80 PANLPWGSSNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPS 123 (332)
T ss_dssp GGGSCTTTTTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCC
T ss_pred cccCCccccCccEEEEecccccCHHHHHHHHHcCCCEEEECCCC
Confidence 4443 23458999999999999999999999999 778887773
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0011 Score=60.06 Aligned_cols=78 Identities=17% Similarity=0.014 Sum_probs=49.6
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CC---CCCcccCCHHHHhcCCCCcEEEEc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FP---PDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
++++||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.+.. .+ ..+++..+..+.++ +.|+|+++
T Consensus 4 ~~~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~--~aDvViia 81 (316)
T 1ldn_A 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCR--DADLVVIC 81 (316)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTT--TCSEEEEC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhC--CCCEEEEc
Confidence 3468999999999999887777654333335589999876664333221 11 12233333334455 49999999
Q ss_pred CCCcc
Q 018020 81 LPTSM 85 (362)
Q Consensus 81 ~~~~~ 85 (362)
.+...
T Consensus 82 ~~~~~ 86 (316)
T 1ldn_A 82 AGANQ 86 (316)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
|
| >3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0053 Score=55.42 Aligned_cols=98 Identities=19% Similarity=0.162 Sum_probs=71.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHHHcCCC----C---------------CCccc--CCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAKANNFP----P---------------DAKVY--GSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~~~~~~----~---------------~~~~~--~~~ 65 (362)
++||||=|+|.||+...+++...+++++|+|-|.. .+....+ =+|+.. + .+.++ .++
T Consensus 4 ~~kv~INGfGrIGr~v~R~~~~~~~~~ivaind~~d~~~~a~l-~kyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~dp 82 (338)
T 3lvf_P 4 AVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHL-LKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDA 82 (338)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSCHHHHHHH-HHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSCG
T ss_pred cEEEEEECCCcHHHHHHHHHHHCCCceEEEEecCCCHHHHHHH-hccCCCCCCcCCeEEEcCCEEEECCEEEEEEEeccc
Confidence 58999999999999988888777889999999853 3333322 223211 0 01222 344
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++ ..+.++|+|+-+|......+.+...+++| |.|++.-|.
T Consensus 83 ~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps 125 (338)
T 3lvf_P 83 SKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPA 125 (338)
T ss_dssp GGSCTTTTTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC
T ss_pred ccCCccccCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCC
Confidence 443 23458999999999999999999999999 778887774
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00092 Score=61.69 Aligned_cols=67 Identities=21% Similarity=0.320 Sum_probs=51.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++... ..+.+.|+ .+.+++++++. .|+|++++|...
T Consensus 176 gktvGIIGlG~IG~~vA~~l~~f-G~~V~-~~d~~~~~--~~~~~~g~-----~~~~l~ell~~--aDvV~l~~Plt~ 242 (365)
T 4hy3_A 176 GSEIGIVGFGDLGKALRRVLSGF-RARIR-VFDPWLPR--SMLEENGV-----EPASLEDVLTK--SDFIFVVAAVTS 242 (365)
T ss_dssp SSEEEEECCSHHHHHHHHHHTTS-CCEEE-EECSSSCH--HHHHHTTC-----EECCHHHHHHS--CSEEEECSCSSC
T ss_pred CCEEEEecCCcccHHHHHhhhhC-CCEEE-EECCCCCH--HHHhhcCe-----eeCCHHHHHhc--CCEEEEcCcCCH
Confidence 35899999999999999999876 78876 68887432 22344553 35799999986 999999999753
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0013 Score=59.85 Aligned_cols=84 Identities=15% Similarity=0.113 Sum_probs=51.1
Q ss_pred CCccCC-ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC---CCCcccCCHHHHhcCCCCc
Q 018020 1 MATESQ-AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP---PDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 1 m~~~~~-~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~---~~~~~~~~~~e~l~~~~~D 75 (362)
|++.+. +++||+|||+|++|...+..+...+-+.-+.++|+++++++..+.++. .. ..+++..+..+.++ +.|
T Consensus 1 ~~~~~~~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~--~aD 78 (326)
T 2zqz_A 1 MASITDKDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAK--DAD 78 (326)
T ss_dssp -----CCCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGG--GCS
T ss_pred CCccccCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhC--CCC
Confidence 444433 458999999999999877766554444445589999988876555431 10 12234333344455 499
Q ss_pred EEEEcCCCccc
Q 018020 76 AVYLPLPTSMH 86 (362)
Q Consensus 76 ~V~i~~~~~~h 86 (362)
+|+++.+...-
T Consensus 79 vVii~ag~~~k 89 (326)
T 2zqz_A 79 LVVITAGAPQK 89 (326)
T ss_dssp EEEECCCCC--
T ss_pred EEEEcCCCCCC
Confidence 99999876543
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00057 Score=62.37 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=66.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc--
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM-- 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~-- 85 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|+++...+ .+.++|. .+.+++++++. .|+|++++|...
T Consensus 145 g~tvGIIG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~-~~~~~g~-----~~~~l~ell~~--aDvV~l~~P~t~~t 214 (330)
T 4e5n_A 145 NATVGFLGMGAIGLAMADRLQGW-GATLQ-YHEAKALDTQ-TEQRLGL-----RQVACSELFAS--SDFILLALPLNADT 214 (330)
T ss_dssp TCEEEEECCSHHHHHHHHHTTTS-CCEEE-EECSSCCCHH-HHHHHTE-----EECCHHHHHHH--CSEEEECCCCSTTT
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCEEE-EECCCCCcHh-HHHhcCc-----eeCCHHHHHhh--CCEEEEcCCCCHHH
Confidence 46899999999999999999877 78866 6888763332 2334453 24589999985 899999999542
Q ss_pred cHHH---HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 86 HVKW---AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 86 h~~~---~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
+.-+ ....++.| .+++.-- ...+-+-.+|.++.++.++
T Consensus 215 ~~li~~~~l~~mk~g-ailIN~a-rg~~vd~~aL~~aL~~g~i 255 (330)
T 4e5n_A 215 LHLVNAELLALVRPG-ALLVNPC-RGSVVDEAAVLAALERGQL 255 (330)
T ss_dssp TTCBCHHHHTTSCTT-EEEEECS-CGGGBCHHHHHHHHHHTSE
T ss_pred HHHhCHHHHhhCCCC-cEEEECC-CCchhCHHHHHHHHHhCCc
Confidence 2111 12222333 3555421 1233444455665555443
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00089 Score=58.59 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=55.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-------------------HHHHHHHHHcC-CCCCCcc------
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-------------------EKATNFAKANN-FPPDAKV------ 61 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-------------------~~~~~~~~~~~-~~~~~~~------ 61 (362)
..||.|||+|.+|...+..|... ++.-+.++|++. .+++.++++.. +.|++.+
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~~-Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~ 109 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL 109 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred CCeEEEEeeCHHHHHHHHHHHHc-CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 46899999999999999998776 553345888876 56666555431 1122111
Q ss_pred cC--CHHHHhcCCCCcEEEEcCCCccc-HHHHHHHHHcCCeEEE
Q 018020 62 YG--SYEALLDDKDIDAVYLPLPTSMH-VKWAISVAQKKKHLLM 102 (362)
Q Consensus 62 ~~--~~~e~l~~~~~D~V~i~~~~~~h-~~~~~~al~~gk~V~~ 102 (362)
++ +++++++ +.|+|+.++++..- ..+...|.+.|++++.
T Consensus 110 ~~~~~~~~~~~--~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~ 151 (249)
T 1jw9_B 110 LDDAELAALIA--EHDLVLDCTDNVAVRNQLNAGCFAAKVPLVS 151 (249)
T ss_dssp CCHHHHHHHHH--TSSEEEECCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCHhHHHHHHh--CCCEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 11 2344555 37888887776432 3333344455655443
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0019 Score=61.16 Aligned_cols=76 Identities=17% Similarity=0.182 Sum_probs=52.6
Q ss_pred CceeEEEEEeccHH--HHHHHHHHhcCCC--cEEEEEEcCCHHHHHHHHHHcC----CCCCCcccCCHHHHhcCCCCcEE
Q 018020 6 QAAIRFGIIGAADI--ARKLSRAITLAPN--AVLSAVASRSLEKATNFAKANN----FPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 6 ~~~~~v~iiG~G~~--g~~~~~~~~~~~~--~~vv~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
|+++||+|||+|++ |...+..+...+. -+ +.++|+++++++....... .+..+..++|+++.+++ .|+|
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~~~~~ge-V~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d--ADfV 79 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSIDERMSGT-VALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA--ADIV 79 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHCSSCCEE-EEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT--CSEE
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhccccCCe-EEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC--CCEE
Confidence 35789999999996 5667666654331 25 4599999987665432211 11234567899999986 9999
Q ss_pred EEcCCCc
Q 018020 78 YLPLPTS 84 (362)
Q Consensus 78 ~i~~~~~ 84 (362)
+++.++.
T Consensus 80 I~airvG 86 (450)
T 3fef_A 80 IISILPG 86 (450)
T ss_dssp EECCCSS
T ss_pred EeccccC
Confidence 9999864
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0014 Score=59.47 Aligned_cols=78 Identities=12% Similarity=0.071 Sum_probs=50.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C---CCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F---PPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~---~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+++||+|||+|++|...+..+...+-+.-+.++|+++++++..+.++. . ...+++..+..+.++ +.|+|+++.+
T Consensus 4 ~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~--~aDvVii~ag 81 (318)
T 1ez4_A 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCK--DADLVVITAG 81 (318)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGT--TCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhC--CCCEEEECCC
Confidence 469999999999999877766554444445589999988876544431 1 012234333344455 4999999987
Q ss_pred Cccc
Q 018020 83 TSMH 86 (362)
Q Consensus 83 ~~~h 86 (362)
...-
T Consensus 82 ~~~~ 85 (318)
T 1ez4_A 82 APQK 85 (318)
T ss_dssp C---
T ss_pred CCCC
Confidence 6543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0015 Score=59.26 Aligned_cols=78 Identities=12% Similarity=0.031 Sum_probs=49.6
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CC---CCCcccCCHHHHhcCCCCcEEEEc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FP---PDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~---~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|+++||+|||+|++|...+..+...+-+.-+.++|+++++++..+.++. .+ ..+.+..+..+.++ +.|+|+++
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~--~aDvVvi~ 81 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCH--DADLVVIC 81 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGT--TCSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhC--CCCEEEEC
Confidence 4578999999999999877766554333445689999877664322210 10 11233333344455 49999998
Q ss_pred CCCcc
Q 018020 81 LPTSM 85 (362)
Q Consensus 81 ~~~~~ 85 (362)
.+...
T Consensus 82 ag~~~ 86 (317)
T 3d0o_A 82 AGAAQ 86 (317)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87654
|
| >4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0024 Score=57.79 Aligned_cols=99 Identities=16% Similarity=0.121 Sum_probs=70.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCC----C---------------CCccc--CC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFP----P---------------DAKVY--GS 64 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~----~---------------~~~~~--~~ 64 (362)
.++||||=|+|.||+-..+++...+++++|+|-|+.. +.+..+ =+|+.. + .+.++ .+
T Consensus 3 ~~~kv~INGfGrIGr~v~Ra~~~~~~~~ivaINd~~d~~~~a~l-lkyDS~hG~f~~~v~~~~~~l~inGk~I~v~~e~d 81 (345)
T 4dib_A 3 AMTRVAINGFGRIGRMVFRQAIKESAFEIVAINASYPSETLAHL-IKYDTVHGKFDGTVEAFEDHLLVDGKMIRLLNNRD 81 (345)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTTCSSSEEEEEECSSCHHHHHHH-HHEETTTEECSSCEEECSSEEEETTEEEEEECCSC
T ss_pred ccEEEEEECCCcHHHHHHHHHHhCCCceEEEEcCCCCHHHHHHH-hcccCCCCCCCCcEEEcCCEEEECCEEEEEeecCC
Confidence 3689999999999999888887778899999999742 222222 222111 0 11222 34
Q ss_pred HHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
++++ ..+.++|+|+-+|......+.+...+++| |.|++.-|.
T Consensus 82 p~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps 125 (345)
T 4dib_A 82 PKELPWTDLGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPG 125 (345)
T ss_dssp GGGSCTTTTTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred hhhCCccccCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCC
Confidence 4443 23457999999999999999999999999 778887773
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0014 Score=59.31 Aligned_cols=78 Identities=13% Similarity=0.186 Sum_probs=52.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC---CC---cccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP---DA---KVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~---~~---~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+|||+|||+|.||..++..|. .+.+|. +++|++++++.+.+. |+.. +. ..+....+. ..+.|+|++++
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~--~g~~V~-~~~r~~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~~--~~~~D~vilav 75 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS--LYHDVT-VVTRRQEQAAAIQSE-GIRLYKGGEEFRADCSADTSI--NSDFDLLVVTV 75 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH--TTSEEE-EECSCHHHHHHHHHH-CEEEEETTEEEEECCEEESSC--CSCCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHh--cCCceE-EEECCHHHHHHHHhC-CceEecCCCeecccccccccc--cCCCCEEEEEe
Confidence 479999999999999988887 467765 678998888877654 4320 00 000000122 23689999999
Q ss_pred CCcccHHHHH
Q 018020 82 PTSMHVKWAI 91 (362)
Q Consensus 82 ~~~~h~~~~~ 91 (362)
++....+.+.
T Consensus 76 K~~~~~~~l~ 85 (307)
T 3ego_A 76 KQHQLQSVFS 85 (307)
T ss_dssp CGGGHHHHHH
T ss_pred CHHHHHHHHH
Confidence 9976655553
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0018 Score=59.00 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=49.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
++||+|||+|.+|...+..+...+.++ +.++|+++++++..+.. ...+..+..++|+ +.+++ .|+|+++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~-V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~--aD~VI~a 89 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGD-VYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN--SDVVIIT 89 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT--CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC--CCEEEEc
Confidence 479999999999999888877664347 67999998776643211 1222223445777 55654 9999999
Q ss_pred CCC
Q 018020 81 LPT 83 (362)
Q Consensus 81 ~~~ 83 (362)
.+.
T Consensus 90 vg~ 92 (328)
T 2hjr_A 90 AGV 92 (328)
T ss_dssp CSC
T ss_pred CCC
Confidence 743
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0029 Score=60.50 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=51.4
Q ss_pred ceeEEEEEeccHH-HHHHHHHHhcC-CC--cEEEEEEcCCHHHHHHHH---H----HcCCCCCCcccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGAADI-ARKLSRAITLA-PN--AVLSAVASRSLEKATNFA---K----ANNFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~-g~~~~~~~~~~-~~--~~vv~v~d~~~~~~~~~~---~----~~~~~~~~~~~~~~~e~l~~~~~D 75 (362)
+++||+|||+|+. +..++..+... ++ ..=+.++|+++++++... + ..+.+..+..++|+++.+++ .|
T Consensus 27 ~~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~--AD 104 (472)
T 1u8x_X 27 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD--VD 104 (472)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS--CS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC--CC
Confidence 4689999999996 44455444333 12 233559999998766432 2 23444444556799888885 99
Q ss_pred EEEEcCCCc
Q 018020 76 AVYLPLPTS 84 (362)
Q Consensus 76 ~V~i~~~~~ 84 (362)
+|+++.|..
T Consensus 105 ~VViaag~~ 113 (472)
T 1u8x_X 105 FVMAHIRVG 113 (472)
T ss_dssp EEEECCCTT
T ss_pred EEEEcCCCc
Confidence 999999984
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0026 Score=57.71 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=48.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcC--CC--CCCcc-cCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANN--FP--PDAKV-YGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~--~~--~~~~~-~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|||+|||+|.||...+..+...... + +.++|+++++++..+..+. .+ ....+ .+++ +.++ +.|+|+++++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~-~~~~--~aDvViiav~ 76 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFARE-MVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY-ADLK--GSDVVIVAAG 76 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSE-EEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG-GGGT--TCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCe-EEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCH-HHhC--CCCEEEEccC
Confidence 5899999999999888877654222 5 4488999988777654321 00 01122 2454 3344 5999999999
Q ss_pred Cccc
Q 018020 83 TSMH 86 (362)
Q Consensus 83 ~~~h 86 (362)
....
T Consensus 77 ~~~~ 80 (319)
T 1a5z_A 77 VPQK 80 (319)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7653
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00095 Score=62.09 Aligned_cols=99 Identities=10% Similarity=0.172 Sum_probs=66.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC----CC--cEEEEEEcCCHHH-----HHHHHHH---------cCCCCCCcccCCH
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA----PN--AVLSAVASRSLEK-----ATNFAKA---------NNFPPDAKVYGSY 65 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~----~~--~~vv~v~d~~~~~-----~~~~~~~---------~~~~~~~~~~~~~ 65 (362)
.+++||+|||+|.||..++..+.+. +. -.-|-++.++++. .+.+... ..+|++..+.+|+
T Consensus 32 ~~p~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl 111 (391)
T 4fgw_A 32 EKPFKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDL 111 (391)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCH
Confidence 4689999999999999988777532 21 1224467665432 2323221 1344566778999
Q ss_pred HHHhcCCCCcEEEEcCCCcccHHHHHHHH---HcCCeE-EEeCCC
Q 018020 66 EALLDDKDIDAVYLPLPTSMHVKWAISVA---QKKKHL-LMEKPM 106 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~~~~~~h~~~~~~al---~~gk~V-~~EKP~ 106 (362)
++.+++ .|+|++++|...-.+++.+.. +.++.+ .|-|-+
T Consensus 112 ~~al~~--ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 112 IDSVKD--VDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp HHHHTT--CSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred HHHHhc--CCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 999986 999999999988777777654 334444 355655
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0015 Score=59.10 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=50.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
++||+|||+|.+|...+..+...+.++ +.++|+++++++..+.+. +.+..+..++|+ +.+++ .|+|+++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~--aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTAN--SDVIVVT 77 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT--CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCC--CCEEEEc
Confidence 369999999999998888887665457 779999887776543332 111112334777 55654 9999998
Q ss_pred CCCc
Q 018020 81 LPTS 84 (362)
Q Consensus 81 ~~~~ 84 (362)
.+.+
T Consensus 78 ~g~p 81 (309)
T 1ur5_A 78 SGAP 81 (309)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7544
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.004 Score=58.62 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=57.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH--HHhc---CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE--ALLD---DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~--e~l~---~~~~D~V~i~~~ 82 (362)
+++|.|||+|.+|+..++.|.+. +.+++ ++|.++++.+.+. +.|++ .++.|.. ++|. -.+.|+|+++++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~-g~~vv-vId~d~~~v~~~~-~~g~~---vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSS-GVKMV-VLDHDPDHIETLR-KFGMK---VFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHT-TCCEE-EEECCHHHHHHHH-HTTCC---CEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCCEE-EEECCHHHHHHHH-hCCCe---EEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 57899999999999999999876 67766 6799999888775 46654 3443332 2332 246899999999
Q ss_pred CcccHHHHHHHH
Q 018020 83 TSMHVKWAISVA 94 (362)
Q Consensus 83 ~~~h~~~~~~al 94 (362)
+......+...+
T Consensus 78 ~~~~n~~i~~~a 89 (413)
T 3l9w_A 78 DPQTNLQLTEMV 89 (413)
T ss_dssp SHHHHHHHHHHH
T ss_pred ChHHHHHHHHHH
Confidence 876544444333
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0014 Score=59.34 Aligned_cols=72 Identities=13% Similarity=0.107 Sum_probs=50.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|||+|||+|.+|...+..+...+ +.+|+ ++|+++++++..+.+. ..+..+..++|+++ +++ .|+|+++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~-l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~--aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELV-LLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN--SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT--CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC--CCEEEEe
Confidence 58999999999999888876642 56655 8899888777554321 11112234578877 654 9999999
Q ss_pred CCCc
Q 018020 81 LPTS 84 (362)
Q Consensus 81 ~~~~ 84 (362)
+|.+
T Consensus 77 v~~p 80 (310)
T 1guz_A 77 AGLP 80 (310)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8764
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0071 Score=57.85 Aligned_cols=74 Identities=14% Similarity=0.189 Sum_probs=51.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----------cC-C------CCCCcccCCHHHHh
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----------NN-F------PPDAKVYGSYEALL 69 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----------~~-~------~~~~~~~~~~~e~l 69 (362)
...||+|||+|.||...+..+.+. +++|+ ++|+++++++...+. .| + .....+.+|++ .+
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~-G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~ 112 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARV-GISVV-AVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-EL 112 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GG
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HH
Confidence 346899999999999999988766 67765 789999877654331 01 0 00013456773 45
Q ss_pred cCCCCcEEEEcCCCcc
Q 018020 70 DDKDIDAVYLPLPTSM 85 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~ 85 (362)
+ ++|+|++++|...
T Consensus 113 ~--~aDlVIeaVpe~~ 126 (463)
T 1zcj_A 113 S--TVDLVVEAVFEDM 126 (463)
T ss_dssp T--TCSEEEECCCSCH
T ss_pred C--CCCEEEEcCCCCH
Confidence 4 4999999999865
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0029 Score=57.33 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=47.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHH--HcCCC--CCCcc--cCCHHHHhcCCCCcEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAK--ANNFP--PDAKV--YGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~--~~~~~--~~~~~--~~~~~e~l~~~~~D~V~i 79 (362)
++|||+|||+|.+|..++..+.....+ +|+ ++|+++++++..+. ..+.+ ....+ .++++ .+. +.|+|++
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~-l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~aD~Vii 81 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIV-LEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICR--DADMVVI 81 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCCSEEE-EECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGT--TCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEE-EEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-HhC--CCCEEEE
Confidence 458999999999999988888766323 654 88999877652221 11211 01122 23543 344 5999999
Q ss_pred cCCCccc
Q 018020 80 PLPTSMH 86 (362)
Q Consensus 80 ~~~~~~h 86 (362)
+++....
T Consensus 82 ~v~~~~~ 88 (319)
T 1lld_A 82 TAGPRQK 88 (319)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9965543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0011 Score=60.28 Aligned_cols=72 Identities=13% Similarity=0.064 Sum_probs=48.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
++||+|||+|.||...+..+...+..+ +.++|+++++++..+.+ .+.+..+...+++ +.++ +.|+|+++
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~-V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~--~aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLAD-VVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADIS--GSDVVIIT 79 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT--TCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCce-EEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhC--CCCEEEEe
Confidence 589999999999999888886653237 66899988766653211 1112223344777 5555 49999999
Q ss_pred CCC
Q 018020 81 LPT 83 (362)
Q Consensus 81 ~~~ 83 (362)
.+.
T Consensus 80 vg~ 82 (317)
T 2ewd_A 80 ASI 82 (317)
T ss_dssp CCC
T ss_pred CCC
Confidence 843
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0018 Score=57.96 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=48.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+|.+|...+..+...+.+.-+.++|+++++++..+.+ +..+..+...+| .+.+++ .|+|+++.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~--aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG--SEIIVVTA 77 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT--CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC--CCEEEECC
Confidence 58999999999998888776654443355899999876522111 222222333457 566664 99999986
Q ss_pred CCc
Q 018020 82 PTS 84 (362)
Q Consensus 82 ~~~ 84 (362)
+.+
T Consensus 78 g~~ 80 (294)
T 1oju_A 78 GLA 80 (294)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0008 Score=60.89 Aligned_cols=120 Identities=13% Similarity=0.118 Sum_probs=77.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC---HHHHHHHHHHcC----CCCCCcccCCHH---HHhcCCCCcEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS---LEKATNFAKANN----FPPDAKVYGSYE---ALLDDKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~---~~~~~~~~~~~~----~~~~~~~~~~~~---e~l~~~~~D~V~ 78 (362)
-++.|+|+|.+|+..+..|.+. ++.-+.|++|+ .+++++++++++ ..-.+.-+++.+ +.+. +.|+|+
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~-Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~--~aDiII 231 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALD-GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIA--ESVIFT 231 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH--TCSEEE
T ss_pred CEEEEECCChHHHHHHHHHHHC-CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhc--CCCEEE
Confidence 4799999999999999988876 66334588999 899988877643 110011234433 4455 499999
Q ss_pred EcCCCcccHH-----H-HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 79 LPLPTSMHVK-----W-AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 79 i~~~~~~h~~-----~-~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
.+||...+.. + -...++. ..+++| +..++.+ -.+++.|++.|+++.-|.....
T Consensus 232 NaTp~Gm~~~~~~~p~~~~~~l~~-~~~V~D--lvY~P~~-T~ll~~A~~~G~~~~~Gl~MLv 290 (315)
T 3tnl_A 232 NATGVGMKPFEGETLLPSADMLRP-ELIVSD--VVYKPTK-TRLLEIAEEQGCQTLNGLGMML 290 (315)
T ss_dssp ECSSTTSTTSTTCCSCCCGGGCCT-TCEEEE--SCCSSSS-CHHHHHHHHTTCEEECSHHHHH
T ss_pred ECccCCCCCCCCCCCCCcHHHcCC-CCEEEE--eccCCCC-CHHHHHHHHCCCeEeCcHHHHH
Confidence 9999654422 1 1233433 355555 3334333 3567788889998877755444
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00039 Score=62.22 Aligned_cols=63 Identities=19% Similarity=0.257 Sum_probs=49.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..+..++.. +++|+ ++|++++..+. ....++++++++. .|+|++++|..
T Consensus 122 g~tvGIIGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~----------~~~~~~l~ell~~--aDiV~l~~P~t 184 (290)
T 3gvx_A 122 GKALGILGYGGIGRRVAHLAKAF-GMRVI-AYTRSSVDQNV----------DVISESPADLFRQ--SDFVLIAIPLT 184 (290)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-TCEEE-EECSSCCCTTC----------SEECSSHHHHHHH--CSEEEECCCCC
T ss_pred cchheeeccCchhHHHHHHHHhh-CcEEE-EEecccccccc----------ccccCChHHHhhc--cCeEEEEeecc
Confidence 36899999999999999999877 78877 57887543221 2456799999986 99999999953
|
| >3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.001 Score=61.37 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=63.6
Q ss_pred eEEEEEec-cHHHHHHHH-HHhcCC--CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSR-AITLAP--NAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~-~~~~~~--~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~~~~~D~V~i~~ 81 (362)
|||||||+ |..|..+++ .|.++| ..+++.+.+++ ..+.+.+ ++- .. ..+. +.++ ++ ++|+|+.|+
T Consensus 1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~--aG~~~~~-~~~-~~-~~~~~~~~~~~-~~--~~Dvvf~a~ 72 (370)
T 3pzr_A 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ--IGVPAPN-FGK-DA-GMLHDAFDIES-LK--QLDAVITCQ 72 (370)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS--TTSBCCC-SSS-CC-CBCEETTCHHH-HT--TCSEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc--cCcCHHH-hCC-Cc-eEEEecCChhH-hc--cCCEEEECC
Confidence 68999996 778999998 888888 68888887654 2222111 210 01 1222 3333 33 699999999
Q ss_pred CCcccHHHHHHHHHcCC-eEEEeCCC
Q 018020 82 PTSMHVKWAISVAQKKK-HLLMEKPM 106 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk-~V~~EKP~ 106 (362)
|.....+++..++++|. .++++-|-
T Consensus 73 ~~~~s~~~~~~~~~~G~k~~VID~ss 98 (370)
T 3pzr_A 73 GGSYTEKVYPALRQAGWKGYWIDAAS 98 (370)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred ChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 99999999999999995 57777664
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0031 Score=56.84 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=46.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-C--CCCccc-CCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-P--PDAKVY-GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~--~~~~~~-~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+||+|||+|.+|...+..+...+.+.-+.++|+++++++..+.+.. . + ...++. +++ +.++ +.|+|+++.+.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~a~~--~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-SELA--DAQVVILTAGA 77 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-GGGT--TCSEEEECC--
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-HHhC--CCCEEEEcCCC
Confidence 4899999999999988887665333235589999987776555432 1 0 112222 344 3344 59999999976
Q ss_pred ccc
Q 018020 84 SMH 86 (362)
Q Consensus 84 ~~h 86 (362)
..+
T Consensus 78 ~~~ 80 (304)
T 2v6b_A 78 NQK 80 (304)
T ss_dssp ---
T ss_pred CCC
Confidence 554
|
| >3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00091 Score=61.94 Aligned_cols=94 Identities=7% Similarity=-0.024 Sum_probs=64.8
Q ss_pred ceeEEEEEec-cHHHHHHHH-HHhcCC--CcEEEEEEcCCHHHHHHHHHHc-CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGA-ADIARKLSR-AITLAP--NAVLSAVASRSLEKATNFAKAN-NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~-~~~~~~--~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.++||||||+ |..|..+++ .|.++| ..+++.+.+++ ..+.+.+ + +....+.-.++.++ ++ ++|+|+.|+
T Consensus 3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~--aG~~~~~-~~~~~~~v~~~~~~~~-~~--~vDvvf~a~ 76 (377)
T 3uw3_A 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN--AGGKAPS-FAKNETTLKDATSIDD-LK--KCDVIITCQ 76 (377)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC--TTSBCCT-TCCSCCBCEETTCHHH-HH--TCSEEEECS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh--cCCCHHH-cCCCceEEEeCCChhH-hc--CCCEEEECC
Confidence 4799999997 777999998 888888 68888877653 2221111 2 11100111123334 33 599999999
Q ss_pred CCcccHHHHHHHHHcCC-eEEEeCCC
Q 018020 82 PTSMHVKWAISVAQKKK-HLLMEKPM 106 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk-~V~~EKP~ 106 (362)
|.....+++..++++|. .++++-|-
T Consensus 77 ~~~~s~~~~~~~~~~G~k~~VID~ss 102 (377)
T 3uw3_A 77 GGDYTNDVFPKLRAAGWNGYWIDAAS 102 (377)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ChHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 99999999999999995 47777664
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00027 Score=64.22 Aligned_cols=66 Identities=17% Similarity=0.227 Sum_probs=49.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++++....+ . ....+.+++++++. .|+|++++|..
T Consensus 140 g~tvGIIGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~----~---~~~~~~~l~ell~~--aDvV~l~lPlt 205 (324)
T 3hg7_A 140 GRTLLILGTGSIGQHIAHTGKHF-GMKVL-GVSRSGRERAGF----D---QVYQLPALNKMLAQ--ADVIVSVLPAT 205 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCCCTTC----S---EEECGGGHHHHHHT--CSEEEECCCCC
T ss_pred cceEEEEEECHHHHHHHHHHHhC-CCEEE-EEcCChHHhhhh----h---cccccCCHHHHHhh--CCEEEEeCCCC
Confidence 46899999999999999999877 78876 678875322111 1 01235789999986 99999999964
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0048 Score=58.66 Aligned_cols=76 Identities=13% Similarity=0.207 Sum_probs=52.2
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH--------HHHHcCCC--------CCCcccCCHHHHh
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN--------FAKANNFP--------PDAKVYGSYEALL 69 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~--------~~~~~~~~--------~~~~~~~~~~e~l 69 (362)
+...||+|||+|.||...+..+.+. +++|+ ++|++++++.. +.++-.++ ......+|++ .+
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~a-G~~V~-l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al 128 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLA-GIETF-LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KL 128 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHC-CCeEE-EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HH
Confidence 3457899999999999999988876 78866 78999885432 21211111 1123567775 44
Q ss_pred cCCCCcEEEEcCCCccc
Q 018020 70 DDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h 86 (362)
+ ++|+|+.++|....
T Consensus 129 ~--~aDlVIeAVpe~~~ 143 (460)
T 3k6j_A 129 S--NCDLIVESVIEDMK 143 (460)
T ss_dssp T--TCSEEEECCCSCHH
T ss_pred c--cCCEEEEcCCCCHH
Confidence 4 59999999998654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0018 Score=60.36 Aligned_cols=73 Identities=14% Similarity=0.061 Sum_probs=53.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC--cccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA--KVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|+|||+|.+|...+..++.. +++|+ ++|+++++++.+.+.+|..-.+ .-..++++++. ++|+|+.+++..
T Consensus 168 g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~-~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~--~aDvVi~~~~~p 242 (377)
T 2vhw_A 168 PADVVVIGAGTAGYNAARIANGM-GATVT-VLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVK--RADLVIGAVLVP 242 (377)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHH--HCSEEEECCCCT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHc--CCCEEEECCCcC
Confidence 46899999999999999999887 57755 7899999888877767642000 01345667776 499999987543
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0046 Score=49.46 Aligned_cols=109 Identities=9% Similarity=0.047 Sum_probs=67.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHHHc--CCCCCCccc---CCHHHHh--cCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAKAN--NFPPDAKVY---GSYEALL--DDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~~~--~~~~~~~~~---~~~~e~l--~~~~~D~V~i 79 (362)
+.+|.|+|+|.+|...+..|.+. +.+++ ++|++ +++.+.+.+.+ |+. .++ ++.+.+. .-.+.|+|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~-g~~V~-vid~~~~~~~~~~~~~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQR-GQNVT-VISNLPEDDIKQLEQRLGDNAD---VIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHT-TCCEE-EEECCCHHHHHHHHHHHCTTCE---EEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCCEE-EEECCChHHHHHHHHhhcCCCe---EEEcCCCCHHHHHHcChhhCCEEEE
Confidence 56899999999999999999876 57767 55675 66666665543 322 122 2333332 1246999999
Q ss_pred cCCCcccHHHHHHHH-Hc-C-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 80 PLPTSMHVKWAISVA-QK-K-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 80 ~~~~~~h~~~~~~al-~~-g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++++......+...+ +. + .+|++. +.+.+..+.+ ++.|....
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~---~~~~~~~~~l----~~~G~~~v 122 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLA---VSDSKNLNKI----KMVHPDII 122 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEE---CSSGGGHHHH----HTTCCSEE
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEE---ECCHHHHHHH----HHcCCCEE
Confidence 999876554444443 33 3 567762 3444444333 45666543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.002 Score=58.56 Aligned_cols=93 Identities=16% Similarity=0.126 Sum_probs=60.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC-----C-C-----CCcccCCHHHHhcCCCCcE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF-----P-P-----DAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~-----~-~-----~~~~~~~~~e~l~~~~~D~ 76 (362)
+|||+|||+|.||..++..|.+. +.+|. +++|++ .+.+.+. |+ . . ...++++.+++.+ +.|+
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~-g~~V~-~~~r~~--~~~i~~~-Gl~~~~~~~g~~~~~~~~~~~~~~~~~~--~~Dl 74 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKT-GHCVS-VVSRSD--YETVKAK-GIRIRSATLGDYTFRPAAVVRSAAELET--KPDC 74 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHT-TCEEE-EECSTT--HHHHHHH-CEEEEETTTCCEEECCSCEESCGGGCSS--CCSE
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCeEE-EEeCCh--HHHHHhC-CcEEeecCCCcEEEeeeeeECCHHHcCC--CCCE
Confidence 37999999999999999988776 56765 667765 2444443 21 0 0 1234677777653 5899
Q ss_pred EEEcCCCcccHHHHHHHH---HcCCeE-EEeCCCC
Q 018020 77 VYLPLPTSMHVKWAISVA---QKKKHL-LMEKPMA 107 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al---~~gk~V-~~EKP~~ 107 (362)
|++++|+....+.+.... ..+..| .+.+.+.
T Consensus 75 VilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~ 109 (320)
T 3i83_A 75 TLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGID 109 (320)
T ss_dssp EEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred EEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 999999988776555432 223343 3555553
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0015 Score=60.67 Aligned_cols=64 Identities=19% Similarity=0.297 Sum_probs=50.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++.. ..+ ..+.+++++++. .|+|++++|...
T Consensus 116 g~tvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~-----~~g-----~~~~~l~ell~~--aDvV~l~~Plt~ 179 (380)
T 2o4c_A 116 ERTYGVVGAGQVGGRLVEVLRGL-GWKVL-VCDPPRQAR-----EPD-----GEFVSLERLLAE--ADVISLHTPLNR 179 (380)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECHHHHHH-----STT-----SCCCCHHHHHHH--CSEEEECCCCCS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHC-CCEEE-EEcCChhhh-----ccC-----cccCCHHHHHHh--CCEEEEeccCcc
Confidence 46899999999999999999877 78876 678755321 223 236799999985 899999998754
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0027 Score=57.65 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=48.7
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
|+++||+|||+|.+|...+..+...+-.+ +.++|+++++++..+.+ .+.+..+..++|+ +.+++ .|+|+
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~--aDiVI 80 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGD-VVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG--ADVVI 80 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT--CSEEE
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCe-EEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC--CCEEE
Confidence 45789999999999998888776553226 45899988776432221 1222223335677 55654 99999
Q ss_pred EcCCCc
Q 018020 79 LPLPTS 84 (362)
Q Consensus 79 i~~~~~ 84 (362)
++...+
T Consensus 81 iaag~p 86 (324)
T 3gvi_A 81 VTAGVP 86 (324)
T ss_dssp ECCSCC
T ss_pred EccCcC
Confidence 986543
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.002 Score=58.85 Aligned_cols=66 Identities=14% Similarity=0.147 Sum_probs=50.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++.. + +++ . ...++++++++. .|+|++++|...
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~d~~~~~~--~-~~~-~----~~~~~l~ell~~--aDvV~l~~p~~~ 211 (333)
T 1j4a_A 146 DQVVGVVGTGHIGQVFMQIMEGF-GAKVI-TYDIFRNPE--L-EKK-G----YYVDSLDDLYKQ--ADVISLHVPDVP 211 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCHH--H-HHT-T----CBCSCHHHHHHH--CSEEEECSCCCG
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEE-EECCCcchh--H-Hhh-C----eecCCHHHHHhh--CCEEEEcCCCcH
Confidence 46899999999999999999877 78866 688876543 2 333 2 334589999985 999999999653
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0017 Score=63.21 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=51.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.||...+..++.. +++|+ ++|++... +. +.+.|+ .. .+++++++. .|+|++++|..
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~-G~~V~-~~d~~~~~-~~-a~~~g~----~~-~~l~e~~~~--aDvV~l~~P~~ 207 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAF-GAYVV-AYDPYVSP-AR-AAQLGI----EL-LSLDDLLAR--ADFISVHLPKT 207 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECTTSCH-HH-HHHHTC----EE-CCHHHHHHH--CSEEEECCCCS
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCEEE-EECCCCCh-hH-HHhcCc----EE-cCHHHHHhc--CCEEEECCCCc
Confidence 46899999999999999999877 68866 67887643 22 445564 23 389999985 89999999986
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0012 Score=61.09 Aligned_cols=63 Identities=11% Similarity=0.264 Sum_probs=49.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|+..+.. ..+ ..+.+++++++. .|+|++++|..
T Consensus 119 gktvGIIGlG~IG~~vA~~l~a~-G~~V~-~~d~~~~~~-----~~~-----~~~~sl~ell~~--aDiV~l~~Plt 181 (381)
T 3oet_A 119 DRTIGIVGVGNVGSRLQTRLEAL-GIRTL-LCDPPRAAR-----GDE-----GDFRTLDELVQE--ADVLTFHTPLY 181 (381)
T ss_dssp GCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECHHHHHT-----TCC-----SCBCCHHHHHHH--CSEEEECCCCC
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-CCEEE-EECCChHHh-----ccC-----cccCCHHHHHhh--CCEEEEcCcCC
Confidence 45899999999999999999877 78877 577643321 112 357899999985 99999999854
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0002 Score=65.15 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=49.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++++..+.+ . ....+.+++++++. .|+|++++|..
T Consensus 137 gktvGIiGlG~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~~~----~---~~~~~~~l~ell~~--aDvV~l~lPlt 202 (324)
T 3evt_A 137 GQQLLIYGTGQIGQSLAAKASAL-GMHVI-GVNTTGHPADHF----H---ETVAFTATADALAT--ANFIVNALPLT 202 (324)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESSCCCCTTC----S---EEEEGGGCHHHHHH--CSEEEECCCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC-CCEEE-EECCCcchhHhH----h---hccccCCHHHHHhh--CCEEEEcCCCc
Confidence 35899999999999999999877 78877 578875432211 1 01235789999985 99999999964
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0017 Score=55.22 Aligned_cols=73 Identities=11% Similarity=0.201 Sum_probs=49.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..+||+|||+|.||..++..+.+. +.+|+ ++|++++ .+ .+.|+|++++|+...
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~-g~~V~-~~~~~~~-----------------------~~--~~aD~vi~av~~~~~ 70 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIA-GHEVT-YYGSKDQ-----------------------AT--TLGEIVIMAVPYPAL 70 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECTTCC-----------------------CS--SCCSEEEECSCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcCCHH-----------------------Hh--ccCCEEEEcCCcHHH
Confidence 367999999999999999998776 56765 6787643 22 358999999996655
Q ss_pred HHHHHH---HHHcCCeEE-EeCCCC
Q 018020 87 VKWAIS---VAQKKKHLL-MEKPMA 107 (362)
Q Consensus 87 ~~~~~~---al~~gk~V~-~EKP~~ 107 (362)
.+++.. .++ ++-|+ +-+++.
T Consensus 71 ~~v~~~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 71 AALAKQYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp HHHHHHTHHHHT-TSEEEECCCCBC
T ss_pred HHHHHHHHHhcC-CCEEEEECCCCC
Confidence 555543 334 54443 334443
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00043 Score=61.77 Aligned_cols=78 Identities=9% Similarity=0.040 Sum_probs=51.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC-----cccCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA-----KVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|||+|||+|.||..++..|.+. +.+|+ ++|+++++.+.+... +. .+. ...++. +.++ +.|+|++++|+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~-g~~V~-~~~r~~~~~~~l~~~-~~-~~~~~~~~~~~~~~-~~~~--~~d~vi~~v~~ 73 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ-GHEVQ-GWLRVPQPYCSVNLV-ET-DGSIFNESLTANDP-DFLA--TSDLLLVTLKA 73 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCSEEEEEEE-CT-TSCEEEEEEEESCH-HHHH--TCSEEEECSCG
T ss_pred CeEEEECcCHHHHHHHHHHHhC-CCCEE-EEEcCccceeeEEEE-cC-CCceeeeeeeecCc-cccC--CCCEEEEEecH
Confidence 4799999999999999998776 56755 678876654432211 10 010 023443 4555 49999999999
Q ss_pred cccHHHHHHH
Q 018020 84 SMHVKWAISV 93 (362)
Q Consensus 84 ~~h~~~~~~a 93 (362)
....+++...
T Consensus 74 ~~~~~v~~~l 83 (291)
T 1ks9_A 74 WQVSDAVKSL 83 (291)
T ss_dssp GGHHHHHHHH
T ss_pred HhHHHHHHHH
Confidence 8766655443
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0013 Score=60.67 Aligned_cols=87 Identities=10% Similarity=0.163 Sum_probs=60.3
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcC--CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIG-AADIARKLSRAITLA--PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~--~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~ 83 (362)
++||+||| +|..|...++.|.++ |..+++.+.+++.. -+.+. +.. .+ ..+.+.+ +.+ .++|+|+.|+|.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~sa-G~~~~--~~~-~~-~~~~~~~~~~~--~~~Dvvf~a~~~ 74 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSA-GKSLK--FKD-QD-ITIEETTETAF--EGVDIALFSAGS 74 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTT-TCEEE--ETT-EE-EEEEECCTTTT--TTCSEEEECSCH
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccC-CCcce--ecC-CC-ceEeeCCHHHh--cCCCEEEECCCh
Confidence 58999999 588999999998886 88898888765321 11110 110 00 1111111 123 369999999999
Q ss_pred cccHHHHHHHHHcCCeEE
Q 018020 84 SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~ 101 (362)
....+++..++++|..|+
T Consensus 75 ~~s~~~a~~~~~~G~~vI 92 (366)
T 3pwk_A 75 STSAKYAPYAVKAGVVVV 92 (366)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred HhHHHHHHHHHHCCCEEE
Confidence 999999999999998665
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0013 Score=59.19 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=50.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++ +. +. ..+.+++++++. .|+|++++|...
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~~-G~~V~-~~dr~~~--~~-----~~----~~~~~l~ell~~--aDvV~l~~P~~~ 186 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAAL-GAQVR-GFSRTPK--EG-----PW----RFTNSLEEALRE--ARAAVCALPLNK 186 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHT-TCEEE-EECSSCC--CS-----SS----CCBSCSHHHHTT--CSEEEECCCCST
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEE-EECCCcc--cc-----Cc----ccCCCHHHHHhh--CCEEEEeCcCch
Confidence 46899999999999999999877 68866 6888764 11 21 346789999986 999999999764
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.003 Score=57.34 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=50.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-C--CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-P--PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~--~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
..+||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. . + +.+.++++..+.++ +.|+|+++..
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~--~aDiVvi~ag 85 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAK--DADLVVITAG 85 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGT--TCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhc--CCCEEEECCC
Confidence 468999999999999998888766444345589999988875544431 1 1 12344444344455 4999999865
Q ss_pred C
Q 018020 83 T 83 (362)
Q Consensus 83 ~ 83 (362)
.
T Consensus 86 ~ 86 (326)
T 3vku_A 86 A 86 (326)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0057 Score=55.20 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=68.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC--CCcEEEEEEcCC-HHHHHHHHHHcCC-----C--------------CCCccc--C
Q 018020 8 AIRFGIIGAADIARKLSRAITLA--PNAVLSAVASRS-LEKATNFAKANNF-----P--------------PDAKVY--G 63 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~--~~~~vv~v~d~~-~~~~~~~~~~~~~-----~--------------~~~~~~--~ 63 (362)
++||||=|+|.||+...+++... +++++|+|-|+. .+....+- +|+. + +.+.++ .
T Consensus 2 ~~kv~INGfGrIGr~v~Ra~~~~~~~~~~ivaiNd~~d~~~~a~l~-kyDS~hG~f~~~v~~~~~~l~i~Gk~I~v~~e~ 80 (335)
T 3doc_A 2 AVRVAINGFGRIGRNILRAIVESGRTDIQVVAINDLGPVETNAHLL-RYDSVHGRFPKEVEVAGDTIDVGYGPIKVHAVR 80 (335)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCSEEEEEEECSSCHHHHHHHH-HEETTTEECSSCCEECSSEEESSSSEEEEECCS
T ss_pred CEEEEEECCCcHHHHHHHHHHhccCCCeEEEEEeCCCCHHHHHHHh-cccCCCCCCCCeEEEecCEEEECCEEEEEEeec
Confidence 58999999999999888877655 689999999983 23333221 2211 0 011121 2
Q ss_pred CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 64 SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 64 ~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++++ ..+.++|+|+-+|......+.+...+++| |.|++.-|.
T Consensus 81 dp~~i~w~~~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps 125 (335)
T 3doc_A 81 NPAELPWKEENVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPA 125 (335)
T ss_dssp STTSSCTTTTTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred ccccccccccCCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCC
Confidence 33333 23457999999999999999999999999 778887773
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0018 Score=59.24 Aligned_cols=86 Identities=15% Similarity=0.171 Sum_probs=59.9
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcC--CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIG-AADIARKLSRAITLA--PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~--~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~ 84 (362)
+||+||| +|..|..+++.|.++ |.++++.+.+++.. .+.+. ++- .+ ..+.+.+ +.+ .++|+|+.|+|..
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~a-G~~~~--~~~-~~-~~~~~~~~~~~--~~~Dvvf~a~~~~ 74 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQ-GRKLA--FRG-QE-IEVEDAETADP--SGLDIALFSAGSA 74 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTS-SCEEE--ETT-EE-EEEEETTTSCC--TTCSEEEECSCHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccC-CCcee--ecC-Cc-eEEEeCCHHHh--ccCCEEEECCChH
Confidence 7999999 588899999999887 88899988765321 11110 110 00 1122222 122 3699999999999
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
.+.+++..++++|..|+
T Consensus 75 ~s~~~a~~~~~~G~~vI 91 (344)
T 3tz6_A 75 MSKVQAPRFAAAGVTVI 91 (344)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHhCCCEEE
Confidence 99999999999998655
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0052 Score=58.97 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=52.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|+|||+|.+|...+..++.. +++|+ ++|+++++++. +.+.|. . +.++++++. +.|+|+.++++.
T Consensus 274 GktV~IiG~G~IG~~~A~~lka~-Ga~Vi-v~d~~~~~~~~-A~~~Ga----~-~~~l~e~l~--~aDvVi~atgt~ 340 (494)
T 3ce6_A 274 GKKVLICGYGDVGKGCAEAMKGQ-GARVS-VTEIDPINALQ-AMMEGF----D-VVTVEEAIG--DADIVVTATGNK 340 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHH-HHHTTC----E-ECCHHHHGG--GCSEEEECSSSS
T ss_pred cCEEEEEccCHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHH-HHHcCC----E-EecHHHHHh--CCCEEEECCCCH
Confidence 35899999999999999999877 57755 78999887655 345664 2 457888886 499999998654
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0033 Score=56.83 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=52.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-----C-----CCcccCCHHHHhcCCCCcEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-----P-----DAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~e~l~~~~~D~V 77 (362)
++||+|||+|.||..++..|.+. +.+|. +++|++ .+.+. +.|+. . ...++++.+++ . +.|+|
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~-g~~V~-~~~r~~--~~~i~-~~g~~~~~~~g~~~~~~~~~~~~~~~~-~--~~D~v 73 (312)
T 3hn2_A 2 SLRIAIVGAGALGLYYGALLQRS-GEDVH-FLLRRD--YEAIA-GNGLKVFSINGDFTLPHVKGYRAPEEI-G--PMDLV 73 (312)
T ss_dssp --CEEEECCSTTHHHHHHHHHHT-SCCEE-EECSTT--HHHHH-HTCEEEEETTCCEEESCCCEESCHHHH-C--CCSEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCeEE-EEEcCc--HHHHH-hCCCEEEcCCCeEEEeeceeecCHHHc-C--CCCEE
Confidence 37899999999999999988776 45655 667765 34444 33321 0 12345677663 3 59999
Q ss_pred EEcCCCcccHHHHHHH
Q 018020 78 YLPLPTSMHVKWAISV 93 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~a 93 (362)
++++|+....+.+...
T Consensus 74 ilavk~~~~~~~l~~l 89 (312)
T 3hn2_A 74 LVGLKTFANSRYEELI 89 (312)
T ss_dssp EECCCGGGGGGHHHHH
T ss_pred EEecCCCCcHHHHHHH
Confidence 9999998877666554
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0025 Score=57.98 Aligned_cols=75 Identities=16% Similarity=-0.017 Sum_probs=49.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc--CCC---CCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN--NFP---PDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~--~~~---~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
..+||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++ +.| ..+.++++..+.++ +.|+|+++.
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~--~aDvVvi~a 81 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCK--DADIVCICA 81 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGT--TCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhC--CCCEEEEec
Confidence 46899999999999999888876644433458999998877643332 111 12334433334455 499999986
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
..
T Consensus 82 g~ 83 (326)
T 3pqe_A 82 GA 83 (326)
T ss_dssp SC
T ss_pred cc
Confidence 53
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00021 Score=64.76 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=48.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++++..+ ++. ......+++++++. .|+|++++|..
T Consensus 139 g~tvGIiG~G~IG~~vA~~l~~~-G~~V~-~~dr~~~~~~------~~~-~~~~~~~l~ell~~--aDiV~l~~Plt 204 (315)
T 3pp8_A 139 EFSVGIMGAGVLGAKVAESLQAW-GFPLR-CWSRSRKSWP------GVE-SYVGREELRAFLNQ--TRVLINLLPNT 204 (315)
T ss_dssp TCCEEEECCSHHHHHHHHHHHTT-TCCEE-EEESSCCCCT------TCE-EEESHHHHHHHHHT--CSEEEECCCCC
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCEEE-EEcCCchhhh------hhh-hhcccCCHHHHHhh--CCEEEEecCCc
Confidence 46899999999999999999877 78877 5777654221 110 00112689999985 89999999954
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0065 Score=55.56 Aligned_cols=79 Identities=11% Similarity=0.081 Sum_probs=52.9
Q ss_pred CCccCCceeEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHc---CCC-CCCcccCCHHHHhcCCCC
Q 018020 1 MATESQAAIRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKAN---NFP-PDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~---~~~-~~~~~~~~~~e~l~~~~~ 74 (362)
|+-+-|..+||+|||+ |.+|...+..+...+-. + +.++|+++++++..+.++ ..+ ..+...+++.+.+++ .
T Consensus 1 ~~~~~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~e-vvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d--A 77 (343)
T 3fi9_A 1 MSLSYLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPN-LCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD--A 77 (343)
T ss_dssp -CCCCSCSSEEEEETTTSHHHHHHHHHHHHTTCCSC-EEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT--E
T ss_pred CCccccCCCEEEEECCCChHHHHHHHHHHhcCCCCE-EEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC--C
Confidence 4445567889999997 99999887766555322 4 458999988766533221 122 123445788888885 9
Q ss_pred cEEEEcCC
Q 018020 75 DAVYLPLP 82 (362)
Q Consensus 75 D~V~i~~~ 82 (362)
|+|+++..
T Consensus 78 DvVvitaG 85 (343)
T 3fi9_A 78 KYIVSSGG 85 (343)
T ss_dssp EEEEECCC
T ss_pred CEEEEccC
Confidence 99999753
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.011 Score=54.15 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=61.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHH-HH---hcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYE-AL---LDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~-e~---l~~~~~D~V~i~~ 81 (362)
-+|.|+|+|.+|...++.++...+.++++ .++++++.+ +++++|.. .+. +++. ++ .....+|+|+-++
T Consensus 173 ~~vlv~GaG~vG~~a~qla~~~g~~~Vi~-~~~~~~~~~-~~~~lGa~---~~i~~~~~~~~~v~~~t~g~g~d~v~d~~ 247 (345)
T 3jv7_A 173 STAVVIGVGGLGHVGIQILRAVSAARVIA-VDLDDDRLA-LAREVGAD---AAVKSGAGAADAIRELTGGQGATAVFDFV 247 (345)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEE-EESCHHHHH-HHHHTTCS---EEEECSTTHHHHHHHHHGGGCEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEE-EcCCHHHHH-HHHHcCCC---EEEcCCCcHHHHHHHHhCCCCCeEEEECC
Confidence 47899999999998888887775677664 567777665 55778753 122 1222 22 2223799999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
......+.+.++++.| +-|++
T Consensus 248 G~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 248 GAQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp CCHHHHHHHHHHEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHhcCCEEEEE
Confidence 9987788888888776 44444
|
| >1gr0_A Inositol-3-phosphate synthase; isomerase, oxidoreductase, PSI, protein structure initiative, TB structural genomics consortium, TB; HET: NAD; 1.95A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0093 Score=54.10 Aligned_cols=126 Identities=13% Similarity=0.146 Sum_probs=81.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcC---------------------C-CcEEEEEEcCCHHHHHH-HHH----HcCC---
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLA---------------------P-NAVLSAVASRSLEKATN-FAK----ANNF--- 55 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~---------------------~-~~~vv~v~d~~~~~~~~-~~~----~~~~--- 55 (362)
..++||||||.|+.|...+..+... + ++++++.+|.++.+.-+ +.+ +.++
T Consensus 13 ~~~~rVaIVGvGN~GsaLv~Gi~~yk~~~~~~~~~Gl~~~~~g~~~~~Di~iVaafDId~~KVG~~l~~A~~~~~n~~~~ 92 (367)
T 1gr0_A 13 STEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIK 92 (367)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCC
T ss_pred ccCCCEEEECcChHHHHHHHHHHHHhccCcccccCCccccccCCccCCCeEEEEEEcCChHHHHHHhhCCEecCCCchhh
Confidence 3579999999999999877743211 1 57899999997754321 111 1121
Q ss_pred ----C------------CC------------CcccCCHHHHhcCCCCcEEEEcCCCccc---HHHHHHHHHcCCeEEEeC
Q 018020 56 ----P------------PD------------AKVYGSYEALLDDKDIDAVYLPLPTSMH---VKWAISVAQKKKHLLMEK 104 (362)
Q Consensus 56 ----~------------~~------------~~~~~~~~e~l~~~~~D~V~i~~~~~~h---~~~~~~al~~gk~V~~EK 104 (362)
+ .+ .....|+.+.+++.++|+|+.-.|.... .-++.+|+++|.+.+---
T Consensus 93 ~~~v~~~~v~v~~g~~ldgia~~~~~~i~~s~~~~~Di~~~~~~~~~dVvV~~lp~gs~~aS~~YA~Aal~ag~~fvN~~ 172 (367)
T 1gr0_A 93 IADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNAL 172 (367)
T ss_dssp CSCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEEEECS
T ss_pred hhcccccCceEccCCCCCchhhhhhhccccccchhhHHHHHHHHhCCcEEEEeeeCCCcCHHHHHHHHHHHcCCceEecC
Confidence 1 00 0123367778888899977777776532 446778999999988777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 018020 105 PMALNVAEFDVILNACEENGVQLMDGTMWV 134 (362)
Q Consensus 105 P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r 134 (362)
|-..- .-.++.++++++|+++. |--..
T Consensus 173 P~~~~--~~P~~~el~~~~g~pi~-GdD~K 199 (367)
T 1gr0_A 173 PVFIA--SDPVWAKKFTDARVPIV-GDDIK 199 (367)
T ss_dssp SCCST--TSHHHHHHHHHHTCEEE-ESSBC
T ss_pred Ccccc--CCHHHHHHHHHcCCCEe-ccccc
Confidence 74332 22337789999999865 44433
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0017 Score=59.37 Aligned_cols=103 Identities=15% Similarity=0.173 Sum_probs=66.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++.. + ++. ..+.+++++++. .|+|++++|.....
T Consensus 145 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~d~~~~~~--~-~~~------~~~~~l~ell~~--aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 145 QQTVGVMGTGHIGQVAIKLFKGF-GAKVI-AYDPYPMKG--D-HPD------FDYVSLEDLFKQ--SDVIDLHVPGIEQN 211 (333)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCSS--C-CTT------CEECCHHHHHHH--CSEEEECCCCCGGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCcchh--h-Hhc------cccCCHHHHHhc--CCEEEEcCCCchhH
Confidence 46899999999999999999877 78866 688875432 1 111 125689999985 99999999975421
Q ss_pred -----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 88 -----KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 88 -----~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.-....++.| .+++.-- ...+-+.+.|.++.++.++
T Consensus 212 ~~li~~~~l~~mk~g-a~lIn~s-rg~~vd~~aL~~aL~~g~i 252 (333)
T 1dxy_A 212 THIINEAAFNLMKPG-AIVINTA-RPNLIDTQAMLSNLKSGKL 252 (333)
T ss_dssp TTSBCHHHHHHSCTT-EEEEECS-CTTSBCHHHHHHHHHTTSE
T ss_pred HHHhCHHHHhhCCCC-cEEEECC-CCcccCHHHHHHHHHhCCc
Confidence 1223444444 4555432 2233444566666665443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0013 Score=59.49 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=49.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++... + .+.+++++++. .|+|++++|...
T Consensus 144 g~~vgIIG~G~IG~~~A~~l~~~-G~~V~-~~d~~~~~~~-------~-----~~~~l~ell~~--aDvV~l~~p~~~ 205 (311)
T 2cuk_A 144 GLTLGLVGMGRIGQAVAKRALAF-GMRVV-YHARTPKPLP-------Y-----PFLSLEELLKE--ADVVSLHTPLTP 205 (311)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCSSS-------S-----CBCCHHHHHHH--CSEEEECCCCCT
T ss_pred CCEEEEEEECHHHHHHHHHHHHC-CCEEE-EECCCCcccc-------c-----ccCCHHHHHhh--CCEEEEeCCCCh
Confidence 46899999999999999999877 68865 6888764322 1 25689999985 899999999863
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0061 Score=57.92 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=51.6
Q ss_pred eeEEEEEeccHH-HHHHHHHHhcC-CC--cEEEEEEcCCH--HHHHH---HHH----HcCCCCCCcccCCHHHHhcCCCC
Q 018020 8 AIRFGIIGAADI-ARKLSRAITLA-PN--AVLSAVASRSL--EKATN---FAK----ANNFPPDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~-g~~~~~~~~~~-~~--~~vv~v~d~~~--~~~~~---~~~----~~~~~~~~~~~~~~~e~l~~~~~ 74 (362)
++||+|||+|+. +..++..+... ++ ..=+.++|+++ ++++. ++. ..+.+..+..++|+++.+++ .
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--A 84 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--A 84 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--C
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC--C
Confidence 689999999997 65555544432 33 23355999998 77654 222 23444344456799888885 9
Q ss_pred cEEEEcCCCcc
Q 018020 75 DAVYLPLPTSM 85 (362)
Q Consensus 75 D~V~i~~~~~~ 85 (362)
|+|+++.+...
T Consensus 85 D~VVitagv~~ 95 (450)
T 1s6y_A 85 DFVTTQFRVGG 95 (450)
T ss_dssp SEEEECCCTTH
T ss_pred CEEEEcCCCCC
Confidence 99999999754
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0017 Score=59.52 Aligned_cols=64 Identities=19% Similarity=0.337 Sum_probs=49.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.||+..++.++.. +++|+ ++|++++.. . +.+ ..+.+++++++. .|+|++++|..
T Consensus 148 gktvgIiGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~--~--~~~-----~~~~~l~ell~~--aDvV~l~~Plt 211 (343)
T 2yq5_A 148 NLTVGLIGVGHIGSAVAEIFSAM-GAKVI-AYDVAYNPE--F--EPF-----LTYTDFDTVLKE--ADIVSLHTPLF 211 (343)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCGG--G--TTT-----CEECCHHHHHHH--CSEEEECCCCC
T ss_pred CCeEEEEecCHHHHHHHHHHhhC-CCEEE-EECCChhhh--h--hcc-----ccccCHHHHHhc--CCEEEEcCCCC
Confidence 45899999999999999999877 78866 688876431 1 111 235599999985 99999999953
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0055 Score=58.54 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=63.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~ 81 (362)
..|||.|+|+|..|...++.|... +.+++ +.|.++++++.+.+++++. .++ ++.+-+-+ -.+.|+++.+|
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~~-~~~v~-vId~d~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVGE-NNDIT-IVDKDGDRLRELQDKYDLR---VVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCST-TEEEE-EEESCHHHHHHHHHHSSCE---EEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CcCEEEEECCCHHHHHHHHHHHHC-CCCEE-EEECCHHHHHHHHHhcCcE---EEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 368999999999999999998765 67766 7899999999999998764 233 23333322 25799999999
Q ss_pred CCcccHHHHHHHHHc--C-CeEEE
Q 018020 82 PTSMHVKWAISVAQK--K-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~--g-k~V~~ 102 (362)
+.+.---++....+. + ++++.
T Consensus 77 ~~De~Nl~~~~~Ak~~~~~~~~ia 100 (461)
T 4g65_A 77 NTDETNMAACQVAFTLFNTPNRIA 100 (461)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEE
T ss_pred CChHHHHHHHHHHHHhcCCcccee
Confidence 887654444333322 3 55554
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0085 Score=56.20 Aligned_cols=65 Identities=11% Similarity=0.047 Sum_probs=50.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
-.+|+|||+|.+|+..+..++.. +++|+ ++|+++.++... ...|. .+.++++++.. .|+|+.++.
T Consensus 211 GktVgIiG~G~IG~~vA~~Lka~-Ga~Vi-v~D~~p~~a~~A-~~~G~-----~~~sL~eal~~--ADVVilt~g 275 (436)
T 3h9u_A 211 GKTACVCGYGDVGKGCAAALRGF-GARVV-VTEVDPINALQA-AMEGY-----QVLLVEDVVEE--AHIFVTTTG 275 (436)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHH-HHTTC-----EECCHHHHTTT--CSEEEECSS
T ss_pred CCEEEEEeeCHHHHHHHHHHHHC-CCEEE-EECCChhhhHHH-HHhCC-----eecCHHHHHhh--CCEEEECCC
Confidence 46899999999999999999988 68865 799998765543 34453 25699999985 999997553
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0031 Score=58.29 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=61.9
Q ss_pred eEEEEEe-ccHHHHHHHH-HHhcC--CCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIG-AADIARKLSR-AITLA--PNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~-~~~~~--~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
+||||+| +|.+|...++ .+.++ |.+++..+..++. .+.+..-.|. ...+. .+.++ ++ ++|+|+.|+|
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~--G~~v~~~~g~--~i~~~~~~~~~~-~~--~~DvVf~a~g 74 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQL--GQAAPSFGGT--TGTLQDAFDLEA-LK--ALDIIVTCQG 74 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSST--TSBCCGGGTC--CCBCEETTCHHH-HH--TCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCC--CCCccccCCC--ceEEEecCChHH-hc--CCCEEEECCC
Confidence 6899999 8999999999 66655 3467766665431 1111100121 11222 23444 34 6999999999
Q ss_pred CcccHHHHHHHHHcCC-eEEEeCCCC
Q 018020 83 TSMHVKWAISVAQKKK-HLLMEKPMA 107 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk-~V~~EKP~~ 107 (362)
.....+++..++++|. -++++-|-+
T Consensus 75 ~~~s~~~a~~~~~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 75 GDYTNEIYPKLRESGWQGYWIDAASS 100 (367)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred chhHHHHHHHHHHCCCCEEEEcCChh
Confidence 9999999999999995 577776543
|
| >3hja_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; niaid, ssgcid, decode, UW, SBRI, LYME disease, non-hodgkin lymphomas, cytoplasm; HET: NAD; 2.20A {Borrelia burgdorferi B31} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=59.90 Aligned_cols=98 Identities=12% Similarity=0.127 Sum_probs=66.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHHHcCC-----C--------------CCCcccC--C
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAKANNF-----P--------------PDAKVYG--S 64 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~~~~~-----~--------------~~~~~~~--~ 64 (362)
.++||||.|+|.+|+..++.+.+. +++|++|-|.. .+....+- +|.. + +.+.++. +
T Consensus 20 ~~~kVaInGfGrIGr~vlr~l~e~-~~~ivaIndl~d~~~~a~ll-kydS~hG~f~~~v~~~~~~l~i~Gk~I~v~~~~d 97 (356)
T 3hja_A 20 GSMKLAINGFGRIGRNVFKIAFER-GIDIVAINDLTDPKTLAHLL-KYDSTFGVYNKKVESRDGAIVVDGREIKIIAERD 97 (356)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHH-HEETTTEECSSCEEEETTEEEETTEEEEEECCSS
T ss_pred CCeEEEEECCCHHHHHHHHHHHHC-CCCEEEEeCCCCHHHhhhhh-ccccCCCCCCCCEEEcCCEEEECCEEEEEEEcCC
Confidence 469999999999999999988766 89999999873 33333222 1111 0 0112221 3
Q ss_pred HHHH-hcCCCCcEEEEcCCCccc----HHHHHHHHH-cC-CeEEEeCCC
Q 018020 65 YEAL-LDDKDIDAVYLPLPTSMH----VKWAISVAQ-KK-KHLLMEKPM 106 (362)
Q Consensus 65 ~~e~-l~~~~~D~V~i~~~~~~h----~~~~~~al~-~g-k~V~~EKP~ 106 (362)
.+++ ..+.++|+|+-+|....- .+.+...++ +| |.|++.-|.
T Consensus 98 p~~i~w~~~gvDiV~esTG~f~s~~~~~e~a~~hl~~aGAkkVVIsaps 146 (356)
T 3hja_A 98 PKNLPWAKLGIDVVIESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPA 146 (356)
T ss_dssp GGGCCHHHHTCSEEEECSSSCCSSCCTTCCGGGGTTTSCCSEEEESSCC
T ss_pred hhhCCccccCCCEEEEecccccccchhHHHHHHHHHhCCCeEEEECCCC
Confidence 3332 122379999999998888 888889999 88 778988774
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0068 Score=54.96 Aligned_cols=75 Identities=13% Similarity=0.105 Sum_probs=48.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
|+++||+|||+|.+|...+..+...+-.+ +.++|+++++++..+.+. +.+..+...+++ +.+++ .|+|+
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~-v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a~~~--aDvVI 78 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGD-VVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KDLEN--SDVVI 78 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT--CSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCce-EEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HHHCC--CCEEE
Confidence 34689999999999998888876553236 448999987765443332 111122224565 45554 89999
Q ss_pred EcCCCc
Q 018020 79 LPLPTS 84 (362)
Q Consensus 79 i~~~~~ 84 (362)
++.+.+
T Consensus 79 i~ag~p 84 (321)
T 3p7m_A 79 VTAGVP 84 (321)
T ss_dssp ECCSCC
T ss_pred EcCCcC
Confidence 986543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.022 Score=52.22 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=71.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC-Cccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP-TSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~-~~~h 86 (362)
-.+|+|+|+|.+|...+..++.. +++|+ ++|+++++ .+++++++. . +.+.++++.. ++|+++-|.- +...
T Consensus 175 GktV~I~G~GnVG~~~A~~l~~~-GakVv-vsD~~~~~-~~~a~~~ga----~-~v~~~ell~~-~~DIliP~A~~~~I~ 245 (355)
T 1c1d_A 175 GLTVLVQGLGAVGGSLASLAAEA-GAQLL-VADTDTER-VAHAVALGH----T-AVALEDVLST-PCDVFAPCAMGGVIT 245 (355)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHH-HHHHHHTTC----E-ECCGGGGGGC-CCSEEEECSCSCCBC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EEeCCccH-HHHHHhcCC----E-EeChHHhhcC-ccceecHhHHHhhcC
Confidence 36899999999999999988877 78998 99999876 667777763 2 3477888874 6899886432 2233
Q ss_pred HHHHHHHHHcCCeEEEeCCCCC-CHHHHHHHHHHHHHcCCEEEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMAL-NVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~-~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+.+ ..+ +..+++|--=.. +.+++. +..++.|+.+..
T Consensus 246 ~~~~-~~l--k~~iVie~AN~p~t~~eA~---~~L~~~gIlv~P 283 (355)
T 1c1d_A 246 TEVA-RTL--DCSVVAGAANNVIADEAAS---DILHARGILYAP 283 (355)
T ss_dssp HHHH-HHC--CCSEECCSCTTCBCSHHHH---HHHHHTTCEECC
T ss_pred HHHH-hhC--CCCEEEECCCCCCCCHHHH---HHHHhCCEEEEC
Confidence 3333 233 457888852111 223443 556777776653
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0098 Score=60.07 Aligned_cols=74 Identities=15% Similarity=0.106 Sum_probs=51.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH----------cCC-C--------CCCcccCCHHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA----------NNF-P--------PDAKVYGSYEAL 68 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~----------~~~-~--------~~~~~~~~~~e~ 68 (362)
..||+|||+|.||...+..+.+. +++|+ ++|++++++++..+. .|. + ..+...+|+ +.
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a-G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~ 388 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS-NYPVI-LKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ES 388 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT-TCCEE-EECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GG
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC-CCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HH
Confidence 45899999999999999988776 67755 789999877654221 121 0 112345677 44
Q ss_pred hcCCCCcEEEEcCCCccc
Q 018020 69 LDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h 86 (362)
++ ++|+|+.++|....
T Consensus 389 ~~--~aDlVIeaVpe~~~ 404 (725)
T 2wtb_A 389 FR--DVDMVIEAVIENIS 404 (725)
T ss_dssp GT--TCSEEEECCCSCHH
T ss_pred HC--CCCEEEEcCcCCHH
Confidence 55 49999999998863
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.028 Score=51.30 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=60.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCH-H---HHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSY-E---ALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~-~---e~l~~~~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...+..++...+.+|++ .|+++++.+ +++++|... +.-+ .++ + ++.....+|.++.++.
T Consensus 165 ~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~-~~~~~~r~~-~~~~~Ga~~-~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~ 241 (348)
T 4eez_A 165 DWQVIFGAGGLGNLAIQYAKNVFGAKVIA-VDINQDKLN-LAKKIGADV-TINSGDVNPVDEIKKITGGLGVQSAIVCAV 241 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTSCCEEEE-EESCHHHHH-HHHHTTCSE-EEEC-CCCHHHHHHHHTTSSCEEEEEECCS
T ss_pred CEEEEEcCCCccHHHHHHHHHhCCCEEEE-EECcHHHhh-hhhhcCCeE-EEeCCCCCHHHHhhhhcCCCCceEEEEecc
Confidence 36899999999988888888777888875 457777654 566776430 0111 122 2 2333457899999988
Q ss_pred CcccHHHHHHHHHcC-CeEEE
Q 018020 83 TSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~ 102 (362)
.......+..+++.| +-+++
T Consensus 242 ~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 242 ARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp CHHHHHHHHHTEEEEEEEEEC
T ss_pred CcchhheeheeecCCceEEEE
Confidence 887777777777665 44444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0051 Score=57.03 Aligned_cols=73 Identities=5% Similarity=0.012 Sum_probs=52.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC--cccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA--KVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|+|+|+|.+|...+..++.. +++|+ ++|+++++++.+.+.++..-.+ .-..++++++. ++|+|+.+++..
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~-~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~--~~DvVi~~~g~~ 240 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGM-GAQVT-ILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQ--HADLLIGAVLVP 240 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHH--HCSEEEECCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHh--CCCEEEECCCCC
Confidence 47899999999999999999877 67755 7899999888777667632000 01245566665 499999988754
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0022 Score=60.13 Aligned_cols=64 Identities=22% Similarity=0.264 Sum_probs=48.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.++||||+|.||+..+..++.. +++|+ ++|+++... . .+...+.+++++++. .|+|++++|...
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~yd~~~~~~------~---~~~~~~~sl~ell~~--aDvV~lhvPlt~ 220 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESL-GMTVR-YYDTSDKLQ------Y---GNVKPAASLDELLKT--SDVVSLHVPSSK 220 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECTTCCCC------B---TTBEECSSHHHHHHH--CSEEEECCCC--
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-CCEEE-EECCcchhc------c---cCcEecCCHHHHHhh--CCEEEEeCCCCH
Confidence 5899999999999999999887 78876 688763211 1 112456899999986 999999999743
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.011 Score=55.43 Aligned_cols=64 Identities=14% Similarity=0.068 Sum_probs=49.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
-+|+|||+|.+|+..+..++.. +++|+ ++|+++.++... ...|. -+.++++++.. .|+|+.++.
T Consensus 248 KTVgVIG~G~IGr~vA~~lraf-Ga~Vi-v~d~dp~~a~~A-~~~G~-----~vv~LeElL~~--ADIVv~atg 311 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGA-GARVK-VTEVDPICALQA-AMDGF-----EVVTLDDAAST--ADIVVTTTG 311 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSHHHHHHH-HHTTC-----EECCHHHHGGG--CSEEEECCS
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCEEE-EEeCCcchhhHH-HhcCc-----eeccHHHHHhh--CCEEEECCC
Confidence 5799999999999999999887 78866 789988765433 34453 24589999985 899988654
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0023 Score=59.97 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=50.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.++||||+|.||...+..++.. +++|+ ++|+++.. ..+ ++..+.+++++++. .|+|++++|...
T Consensus 145 gktlGiIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~------~~~---~~~~~~~l~ell~~--aDvV~l~~P~t~ 209 (404)
T 1sc6_A 145 GKKLGIIGYGHIGTQLGILAESL-GMYVY-FYDIENKL------PLG---NATQVQHLSDLLNM--SDVVSLHVPENP 209 (404)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCC------CCT---TCEECSCHHHHHHH--CSEEEECCCSST
T ss_pred CCEEEEEeECHHHHHHHHHHHHC-CCEEE-EEcCCchh------ccC---CceecCCHHHHHhc--CCEEEEccCCCh
Confidence 35899999999999999999877 78876 68886432 112 12456799999986 899999999753
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0077 Score=51.50 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=59.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~~ 85 (362)
+..+|.|||+|.+|..-+..|.+. +++|+.+.....+..+.++++.++. -....++ +.|+ ++|+|+.+|....
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~-GA~VtVvap~~~~~l~~l~~~~~i~---~i~~~~~~~dL~--~adLVIaAT~d~~ 103 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQE-GAAITVVAPTVSAEINEWEAKGQLR---VKRKKVGEEDLL--NVFFIVVATNDQA 103 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGG-CCCEEEECSSCCHHHHHHHHTTSCE---EECSCCCGGGSS--SCSEEEECCCCTH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHcCCcE---EEECCCCHhHhC--CCCEEEECCCCHH
Confidence 356899999999999999988877 5676644333324466677665542 1122232 2344 5999999999887
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
-...+..+.++|+.|-
T Consensus 104 ~N~~I~~~ak~gi~VN 119 (223)
T 3dfz_A 104 VNKFVKQHIKNDQLVN 119 (223)
T ss_dssp HHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHhCCCEEE
Confidence 7666666666666554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.014 Score=53.49 Aligned_cols=86 Identities=15% Similarity=0.193 Sum_probs=61.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
-+|.|+|+|.+|...+..++.. ++++++ .++++++.+ +++++|.. .++.+.+++ .. .+|+|+.++......+
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~-~~~~~~~~~-~~~~lGa~---~v~~~~~~~-~~-~~D~vid~~g~~~~~~ 249 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAM-GAEVSV-FARNEHKKQ-DALSMGVK---HFYTDPKQC-KE-ELDFIISTIPTHYDLK 249 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-TCEEEE-ECSSSTTHH-HHHHTTCS---EEESSGGGC-CS-CEEEEEECCCSCCCHH
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEE-EeCCHHHHH-HHHhcCCC---eecCCHHHH-hc-CCCEEEECCCcHHHHH
Confidence 4789999999999888888877 678775 456666555 55678853 333444443 33 7999999999887788
Q ss_pred HHHHHHHcC-CeEEE
Q 018020 89 WAISVAQKK-KHLLM 102 (362)
Q Consensus 89 ~~~~al~~g-k~V~~ 102 (362)
.+..+++.| +-|++
T Consensus 250 ~~~~~l~~~G~iv~~ 264 (348)
T 3two_A 250 DYLKLLTYNGDLALV 264 (348)
T ss_dssp HHHTTEEEEEEEEEC
T ss_pred HHHHHHhcCCEEEEE
Confidence 888888776 44444
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.029 Score=51.73 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=64.7
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhcC---CCCcEEEEc
Q 018020 8 AIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLDD---KDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~~---~~~D~V~i~ 80 (362)
--+|.|+| +|.+|...+..++...+.+|++ .++++++.+. ++++|.. .++ +++.+-+.. ..+|+|+.+
T Consensus 172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~-~~~~~~~~~~-~~~lGad---~vi~~~~~~~~~v~~~~~~g~Dvvid~ 246 (363)
T 4dvj_A 172 APAILIVGGAGGVGSIAVQIARQRTDLTVIA-TASRPETQEW-VKSLGAH---HVIDHSKPLAAEVAALGLGAPAFVFST 246 (363)
T ss_dssp EEEEEEESTTSHHHHHHHHHHHHHCCSEEEE-ECSSHHHHHH-HHHTTCS---EEECTTSCHHHHHHTTCSCCEEEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHH-HHHcCCC---EEEeCCCCHHHHHHHhcCCCceEEEEC
Confidence 45799999 8999998888887655788775 4567766654 5667753 222 233333322 469999999
Q ss_pred CCCcccHHHHHHHHHcC-CeEEEeCCCCC
Q 018020 81 LPTSMHVKWAISVAQKK-KHLLMEKPMAL 108 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g-k~V~~EKP~~~ 108 (362)
+......+.+.++++.| +-|++..|...
T Consensus 247 ~g~~~~~~~~~~~l~~~G~iv~~g~~~~~ 275 (363)
T 4dvj_A 247 THTDKHAAEIADLIAPQGRFCLIDDPSAF 275 (363)
T ss_dssp SCHHHHHHHHHHHSCTTCEEEECSCCSSC
T ss_pred CCchhhHHHHHHHhcCCCEEEEECCCCcc
Confidence 98877777777888766 55566555433
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.013 Score=53.35 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=61.7
Q ss_pred ceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCH--HHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSL--EKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~--~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~ 81 (362)
.+.||.+||.|.+|.. .+..+.+. +++|. ++|... ...+.+. +.|++ ++ .+.+++.+ .++|+|+++.
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~-G~~V~-~~D~~~~~~~~~~L~-~~gi~----v~~g~~~~~l~~-~~~d~vV~Sp 74 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEA-GFEVS-GCDAKMYPPMSTQLE-ALGID----VYEGFDAAQLDE-FKADVYVIGN 74 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHT-TCEEE-EEESSCCTTHHHHHH-HTTCE----EEESCCGGGGGS-CCCSEEEECT
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhC-CCEEE-EEcCCCCcHHHHHHH-hCCCE----EECCCCHHHcCC-CCCCEEEECC
Confidence 3568999999999985 77777777 78866 677643 2334443 34653 33 34455541 2489999876
Q ss_pred CCcccHHHHHHHHHcCCeEEEe
Q 018020 82 PTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~E 103 (362)
--+...+.+.+|.++|.+|+.|
T Consensus 75 gi~~~~p~~~~a~~~gi~v~~~ 96 (326)
T 3eag_A 75 VAKRGMDVVEAILNLGLPYISG 96 (326)
T ss_dssp TCCTTCHHHHHHHHTTCCEEEH
T ss_pred CcCCCCHHHHHHHHcCCcEEeH
Confidence 6666667788899999999976
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.012 Score=55.01 Aligned_cols=63 Identities=13% Similarity=0.143 Sum_probs=49.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.+|+|+|+|.+|+..+..++.. +++|+ ++|+++.++.. +...|. -+.++++++.. .|+|+.++
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~-Ga~Vi-v~D~dp~ra~~-A~~~G~-----~v~~Leeal~~--ADIVi~at 283 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAM-GSIVY-VTEIDPICALQ-ACMDGF-----RLVKLNEVIRQ--VDIVITCT 283 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHH-HHHTTC-----EECCHHHHTTT--CSEEEECS
T ss_pred CEEEEEeeCHHHHHHHHHHHHC-CCEEE-EEeCChhhhHH-HHHcCC-----EeccHHHHHhc--CCEEEECC
Confidence 5899999999999999999887 78855 79999876544 334453 24689999985 89999963
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0057 Score=55.81 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=49.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..++||||+|.+|+..++.++.. +++++ .+|+.... . ..+.+ ..+.+++++|+. .|+|++.+|-.
T Consensus 141 g~tvGIiG~G~IG~~va~~~~~f-g~~v~-~~d~~~~~--~-~~~~~-----~~~~~l~ell~~--sDivslh~Plt 205 (334)
T 3kb6_A 141 RLTLGVIGTGRIGSRVAMYGLAF-GMKVL-CYDVVKRE--D-LKEKG-----CVYTSLDELLKE--SDVISLHVPYT 205 (334)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCH--H-HHHTT-----CEECCHHHHHHH--CSEEEECCCCC
T ss_pred CcEEEEECcchHHHHHHHhhccc-Cceee-ecCCccch--h-hhhcC-----ceecCHHHHHhh--CCEEEEcCCCC
Confidence 35899999999999999999877 78877 57775432 1 22334 247899999986 89999998854
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.041 Score=50.76 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=60.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
-+|.|+|+|.+|...++.++.. ++++++ .++++++.+.+.+++|.. .+.-+.+.+.+.+. ..+|+|+.++......
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~-~~~~~~~~~~~~~~lGa~-~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~ 265 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAF-GSKVTV-ISTSPSKKEEALKNFGAD-SFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEE-EESCGGGHHHHHHTSCCS-EEEETTCHHHHHHTTTCEEEEEECCSSCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEE-EeCCHHHHHHHHHhcCCc-eEEeccCHHHHHHhhCCCCEEEECCCcHHHH
Confidence 4789999999999988888876 678664 556777777666677743 11123443333221 3699999999876555
Q ss_pred HHHHHHHHcC-CeEEE
Q 018020 88 KWAISVAQKK-KHLLM 102 (362)
Q Consensus 88 ~~~~~al~~g-k~V~~ 102 (362)
+.+..+++.| +-|.+
T Consensus 266 ~~~~~~l~~~G~iv~~ 281 (366)
T 1yqd_A 266 LPLFGLLKSHGKLILV 281 (366)
T ss_dssp HHHHHHEEEEEEEEEC
T ss_pred HHHHHHHhcCCEEEEE
Confidence 6667777665 43443
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0058 Score=53.41 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=27.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
..||.|||+|..|...+..|... ++.-+.++|.+
T Consensus 28 ~~~VlvvG~GglG~~va~~La~~-Gvg~i~lvD~d 61 (251)
T 1zud_1 28 DSQVLIIGLGGLGTPAALYLAGA-GVGTLVLADDD 61 (251)
T ss_dssp TCEEEEECCSTTHHHHHHHHHHT-TCSEEEEECCC
T ss_pred cCcEEEEccCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 46899999999999999999877 55455677764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.049 Score=50.11 Aligned_cols=87 Identities=15% Similarity=0.059 Sum_probs=59.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHH----HhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEA----LLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e----~l~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. ++++++ .++++++.+. ++++|.. .++ .++.+ +.....+|+|+.+
T Consensus 191 ~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~-~~~~~~~~~~-~~~lGa~---~vi~~~~~~~~~~v~~~~~g~g~D~vid~ 264 (363)
T 3uog_A 191 DRVVVQGTGGVALFGLQIAKAT-GAEVIV-TSSSREKLDR-AFALGAD---HGINRLEEDWVERVYALTGDRGADHILEI 264 (363)
T ss_dssp CEEEEESSBHHHHHHHHHHHHT-TCEEEE-EESCHHHHHH-HHHHTCS---EEEETTTSCHHHHHHHHHTTCCEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEE-EecCchhHHH-HHHcCCC---EEEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence 4799999999999888888876 678775 4677776665 5667753 222 23333 2333479999999
Q ss_pred CCCcccHHHHHHHHHcC-CeEEE
Q 018020 81 LPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
+. ......+.++++.| +-|++
T Consensus 265 ~g-~~~~~~~~~~l~~~G~iv~~ 286 (363)
T 3uog_A 265 AG-GAGLGQSLKAVAPDGRISVI 286 (363)
T ss_dssp TT-SSCHHHHHHHEEEEEEEEEE
T ss_pred CC-hHHHHHHHHHhhcCCEEEEE
Confidence 88 45566777777765 44444
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.007 Score=55.30 Aligned_cols=77 Identities=22% Similarity=0.121 Sum_probs=44.7
Q ss_pred CCceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH----HHHHHHHH--HcCCC---CCCcccCCHHHHhcCCCC
Q 018020 5 SQAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL----EKATNFAK--ANNFP---PDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 5 ~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~----~~~~~~~~--~~~~~---~~~~~~~~~~e~l~~~~~ 74 (362)
+|.+++|.|+|+ |++|...+..|.+. +.+|+++. |++ ++.+.+.. ..++. -+..-.+++.++++..++
T Consensus 7 ~M~~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~-R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 7 PSPKGRVLIAGATGFIGQFVATASLDA-HRPTYILA-RPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp ----CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEE-CSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEE-CCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 355679999998 99999999999877 47777554 433 44443222 12221 011112334455663469
Q ss_pred cEEEEcCCC
Q 018020 75 DAVYLPLPT 83 (362)
Q Consensus 75 D~V~i~~~~ 83 (362)
|+|+.+...
T Consensus 85 d~Vi~~a~~ 93 (346)
T 3i6i_A 85 DIVVSTVGG 93 (346)
T ss_dssp CEEEECCCG
T ss_pred CEEEECCch
Confidence 999987765
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.033 Score=51.18 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=60.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
-+|.|+|+|.+|...++.++.. ++++++ .++++++.+.+.+++|.. .+.-+.+.+.+.+. ..+|+|+.++......
T Consensus 182 ~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~-~~~~~~~~~~~~~~lGa~-~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~ 258 (357)
T 2cf5_A 182 LRGGILGLGGVGHMGVKIAKAM-GHHVTV-ISSSNKKREEALQDLGAD-DYVIGSDQAKMSELADSLDYVIDTVPVHHAL 258 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCEEEE-EESSTTHHHHHHTTSCCS-CEEETTCHHHHHHSTTTEEEEEECCCSCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEE-EeCChHHHHHHHHHcCCc-eeeccccHHHHHHhcCCCCEEEECCCChHHH
Confidence 4799999999999888887766 677665 556666666655578753 11223444444322 3699999999876666
Q ss_pred HHHHHHHHcC-CeEEE
Q 018020 88 KWAISVAQKK-KHLLM 102 (362)
Q Consensus 88 ~~~~~al~~g-k~V~~ 102 (362)
+.+..+++.| +-|++
T Consensus 259 ~~~~~~l~~~G~iv~~ 274 (357)
T 2cf5_A 259 EPYLSLLKLDGKLILM 274 (357)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHHHhccCCEEEEe
Confidence 6677777665 44444
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=58.15 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=49.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.||+..++.++.. +++|+ ++|++++.. + ++. ..+.+++++++. .|+|++++|..
T Consensus 146 g~~vgIiG~G~IG~~~A~~l~~~-G~~V~-~~d~~~~~~--~-~~~------~~~~~l~ell~~--aDvV~~~~p~t 209 (331)
T 1xdw_A 146 NCTVGVVGLGRIGRVAAQIFHGM-GATVI-GEDVFEIKG--I-EDY------CTQVSLDEVLEK--SDIITIHAPYI 209 (331)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCCS--C-TTT------CEECCHHHHHHH--CSEEEECCCCC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEE-EECCCccHH--H-Hhc------cccCCHHHHHhh--CCEEEEecCCc
Confidence 46899999999999999999877 78866 688876432 1 111 125699999985 99999998864
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.014 Score=54.48 Aligned_cols=85 Identities=21% Similarity=0.205 Sum_probs=59.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-----HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-----KATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
--+|+|||+|+-|..|+..|++. +++|+. .-|... +..+-|++-|+. + .++.|..+. .|+|.+.+|
T Consensus 37 gK~IaVIGyGsQG~AqAlNLRDS-Gv~V~V-glr~~s~~e~~~S~~~A~~~Gf~----v-~~~~eA~~~--ADvV~~L~P 107 (491)
T 3ulk_A 37 GKKVVIVGCGAQGLNQGLNMRDS-GLDISY-ALRKEAIAEKRASWRKATENGFK----V-GTYEELIPQ--ADLVINLTP 107 (491)
T ss_dssp TSEEEEESCSHHHHHHHHHHHHT-TCEEEE-EECHHHHHTTCHHHHHHHHTTCE----E-EEHHHHGGG--CSEEEECSC
T ss_pred CCEEEEeCCChHhHHHHhHHHhc-CCcEEE-EeCCCCcccccchHHHHHHCCCE----e-cCHHHHHHh--CCEEEEeCC
Confidence 45899999999999999999988 777663 323111 223344555652 3 378888885 999999999
Q ss_pred CcccHHHHHH---HHHcCCeEE
Q 018020 83 TSMHVKWAIS---VAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~---al~~gk~V~ 101 (362)
...|..+... .|+.|+.+.
T Consensus 108 D~~q~~vy~~I~p~lk~G~~L~ 129 (491)
T 3ulk_A 108 DKQHSDVVRTVQPLMKDGAALG 129 (491)
T ss_dssp GGGHHHHHHHHGGGSCTTCEEE
T ss_pred hhhHHHHHHHHHhhCCCCCEEE
Confidence 9999877654 233455444
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0048 Score=55.78 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=45.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-----CCCCCccc-CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-----FPPDAKVY-GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-----~~~~~~~~-~~~~e~l~~~~~D~V~i~~~ 82 (362)
|||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. ....+.+. ++..+.++ +.|+|+++.+
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~--~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTE--DSDVCIITAG 78 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGT--TCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhC--CCCEEEECCC
Confidence 6899999999999988877655434335589998877653322211 00112333 23334444 4999999876
Q ss_pred Cc
Q 018020 83 TS 84 (362)
Q Consensus 83 ~~ 84 (362)
.+
T Consensus 79 ~~ 80 (314)
T 3nep_X 79 LP 80 (314)
T ss_dssp C-
T ss_pred CC
Confidence 54
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.014 Score=55.79 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=50.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
..+|+|||+|.+|+..++.++.. +++|+ ++|+++.+.... ...|. . +.++++++.. .|+|++++
T Consensus 277 GktVgIIG~G~IG~~vA~~l~~~-G~~V~-v~d~~~~~~~~a-~~~G~----~-~~~l~ell~~--aDiVi~~~ 340 (494)
T 3d64_A 277 GKIAVVAGYGDVGKGCAQSLRGL-GATVW-VTEIDPICALQA-AMEGY----R-VVTMEYAADK--ADIFVTAT 340 (494)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECSCHHHHHHH-HTTTC----E-ECCHHHHTTT--CSEEEECS
T ss_pred CCEEEEEccCHHHHHHHHHHHHC-CCEEE-EEeCChHhHHHH-HHcCC----E-eCCHHHHHhc--CCEEEECC
Confidence 46899999999999999999887 78866 789998764332 23343 2 4589999985 99999986
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.013 Score=55.86 Aligned_cols=64 Identities=13% Similarity=0.044 Sum_probs=50.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
..+|+|||+|.+|+..++.++.. +++|+ ++|+++.+.... ...|+ .+.++++++.. .|+|++++
T Consensus 257 GktVgIIG~G~IG~~vA~~l~~~-G~~Vi-v~d~~~~~~~~a-~~~g~-----~~~~l~ell~~--aDiVi~~~ 320 (479)
T 1v8b_A 257 GKIVVICGYGDVGKGCASSMKGL-GARVY-ITEIDPICAIQA-VMEGF-----NVVTLDEIVDK--GDFFITCT 320 (479)
T ss_dssp TSEEEEECCSHHHHHHHHHHHHH-TCEEE-EECSCHHHHHHH-HTTTC-----EECCHHHHTTT--CSEEEECC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-cCEEE-EEeCChhhHHHH-HHcCC-----EecCHHHHHhc--CCEEEECC
Confidence 46899999999999999999877 78866 789998765332 23343 24689999985 99999985
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.01 Score=53.01 Aligned_cols=71 Identities=14% Similarity=0.126 Sum_probs=47.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+|.+|...+..+...+-+.-+.++|.++++++-.+.++ +..+.....+|+++ ++ +.|+|+|+.
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~-~~--~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL-LK--GSEIIVVTA 77 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGG-GT--TCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHH-hC--CCCEEEEec
Confidence 789999999999988877765555444559999987766444332 11111223456654 44 489999975
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
-
T Consensus 78 G 78 (294)
T 2x0j_A 78 G 78 (294)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0067 Score=61.24 Aligned_cols=74 Identities=8% Similarity=0.018 Sum_probs=51.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcCCCC---------CCcccCCHHHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANNFPP---------DAKVYGSYEAL 68 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~~~~---------~~~~~~~~~e~ 68 (362)
..||+|||+|.||...+..+.+. +++|+ ++|+++++++...+ +.|... .+...+|+ +.
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a-G~~V~-l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~ 390 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK-GTPIL-MKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GD 390 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT-TCCEE-EECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TT
T ss_pred CCEEEEECCChhhHHHHHHHHhC-CCEEE-EEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HH
Confidence 46799999999999999988776 67755 89999987765311 112100 01245566 44
Q ss_pred hcCCCCcEEEEcCCCccc
Q 018020 69 LDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 69 l~~~~~D~V~i~~~~~~h 86 (362)
++ ++|+|+.++|....
T Consensus 391 ~~--~aDlVIeaV~e~~~ 406 (715)
T 1wdk_A 391 FG--NVDLVVEAVVENPK 406 (715)
T ss_dssp GG--GCSEEEECCCSCHH
T ss_pred HC--CCCEEEEcCCCCHH
Confidence 55 49999999998764
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.01 Score=53.92 Aligned_cols=74 Identities=8% Similarity=-0.018 Sum_probs=49.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
..+||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.+. .........+|+++ ++ +.|+|+++
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~--daDiVIit 96 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SA--GSKLVVIT 96 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CS--SCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hC--CCCEEEEe
Confidence 35899999999999988887765543333558999998776543322 11112223467776 55 49999998
Q ss_pred CCC
Q 018020 81 LPT 83 (362)
Q Consensus 81 ~~~ 83 (362)
...
T Consensus 97 aG~ 99 (330)
T 3ldh_A 97 AGA 99 (330)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.017 Score=52.14 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=48.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
+||+|||+|++|...+..+...+-+.-+.++|+++++++..+.++. .. ..+++..+-.+.++ +.|+|+++.+..
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~--~aD~Vii~ag~~ 78 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLE--GARAVVLAAGVA 78 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGT--TEEEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhC--CCCEEEECCCCC
Confidence 5899999999999877776655434445589999988876555432 10 12233222233455 499999987765
Q ss_pred c
Q 018020 85 M 85 (362)
Q Consensus 85 ~ 85 (362)
.
T Consensus 79 ~ 79 (310)
T 2xxj_A 79 Q 79 (310)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.011 Score=56.49 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=49.1
Q ss_pred eEEEEEeccHHHH--HHHHHHhcCCC-----cEEEEEEcCCHHHHHH-------HHHHcCCCCCCcccCCHHHHhcCCCC
Q 018020 9 IRFGIIGAADIAR--KLSRAITLAPN-----AVLSAVASRSLEKATN-------FAKANNFPPDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 9 ~~v~iiG~G~~g~--~~~~~~~~~~~-----~~vv~v~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~e~l~~~~~ 74 (362)
|||+|||+|+.|. .++..+...+. .+ +.++|.++++++. ..+..|.+..+..++|.++.|++ .
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~e-i~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g--A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTH-IYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG--A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCE-EEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT--C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCE-EEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC--C
Confidence 6899999998654 34444443332 34 5599999988654 34445655445667999999986 9
Q ss_pred cEEEEcC
Q 018020 75 DAVYLPL 81 (362)
Q Consensus 75 D~V~i~~ 81 (362)
|+|+++.
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999875
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.063 Score=48.86 Aligned_cols=91 Identities=18% Similarity=0.046 Sum_probs=64.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHh----cCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALL----DDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l----~~~~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...+..++.. +...+.++|+++++.+ +++++|... +..+ .+..+.. +...+|+|+.++.
T Consensus 162 ~~VlV~GaG~vG~~aiq~ak~~-G~~~vi~~~~~~~k~~-~a~~lGa~~-~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G 238 (346)
T 4a2c_A 162 KNVIIIGAGTIGLLAIQCAVAL-GAKSVTAIDISSEKLA-LAKSFGAMQ-TFNSSEMSAPQMQSVLRELRFNQLILETAG 238 (346)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHH-HHHHTTCSE-EEETTTSCHHHHHHHHGGGCSSEEEEECSC
T ss_pred CEEEEECCCCcchHHHHHHHHc-CCcEEEEEechHHHHH-HHHHcCCeE-EEeCCCCCHHHHHHhhcccCCccccccccc
Confidence 4689999999999888888877 6666667888887654 567888531 1111 2333332 2356899999998
Q ss_pred CcccHHHHHHHHHcCCeEEE
Q 018020 83 TSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~ 102 (362)
.....+.+..+++.|-.+.+
T Consensus 239 ~~~~~~~~~~~l~~~G~~v~ 258 (346)
T 4a2c_A 239 VPQTVELAVEIAGPHAQLAL 258 (346)
T ss_dssp SHHHHHHHHHHCCTTCEEEE
T ss_pred ccchhhhhhheecCCeEEEE
Confidence 88888888888888755543
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0084 Score=54.06 Aligned_cols=118 Identities=19% Similarity=0.211 Sum_probs=71.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC---HHHHHHHHHHcCCCCC--Cc--ccCCH---HHHhcCCCCcEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS---LEKATNFAKANNFPPD--AK--VYGSY---EALLDDKDIDAV 77 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~---~~~~~~~~~~~~~~~~--~~--~~~~~---~e~l~~~~~D~V 77 (362)
.-++.|+|+|.+|+..+..|.+. ++.-+.|++|+ .+++++++++++...+ +. -+.+. .+.+.. .|+|
T Consensus 148 gk~~lVlGAGGaaraia~~L~~~-G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~--~DiI 224 (312)
T 3t4e_A 148 GKTMVLLGAGGAATAIGAQAAIE-GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS--ADIL 224 (312)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH--CSEE
T ss_pred CCEEEEECcCHHHHHHHHHHHHc-CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC--ceEE
Confidence 34799999999999999988877 66445589999 8889888876531000 11 13443 444553 8999
Q ss_pred EEcCCCcccHH----HH--HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 78 YLPLPTSMHVK----WA--ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 78 ~i~~~~~~h~~----~~--~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
|.+||...+.. +. ...+. ...+++| +..++.+ -.+++.|++.|+++.-|..
T Consensus 225 INaTp~Gm~~~~~~~~~~~~~~l~-~~~~v~D--~vY~P~~-T~ll~~A~~~G~~~~~Gl~ 281 (312)
T 3t4e_A 225 TNGTKVGMKPLENESLIGDVSLLR-PELLVTE--CVYNPHM-TKLLQQAQQAGCKTIDGYG 281 (312)
T ss_dssp EECSSTTSTTSTTCCSCCCGGGSC-TTCEEEE--CCCSSSS-CHHHHHHHHTTCEEECHHH
T ss_pred EECCcCCCCCCCCCcccCCHHHcC-CCCEEEE--eccCCCC-CHHHHHHHHCCCeEECcHH
Confidence 99999865321 00 11222 2344444 3333322 3455666777776655543
|
| >3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.023 Score=51.70 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=67.9
Q ss_pred eeEEEEEeccHHHHHHHHH----HhcCCCcEEEEEEcC--CHHHHHHHHHHc----C-CCCCC-----------------
Q 018020 8 AIRFGIIGAADIARKLSRA----ITLAPNAVLSAVASR--SLEKATNFAKAN----N-FPPDA----------------- 59 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~----~~~~~~~~vv~v~d~--~~~~~~~~~~~~----~-~~~~~----------------- 59 (362)
++||||=|+|.||+-..++ +...+++++|+|-|+ +.+....+-+ | | ++..+
T Consensus 2 ~~kv~INGFGrIGr~v~Ra~~~~~~~~~~~~vvaINd~~~d~~~~a~llk-yDS~hG~f~~~v~~~~~~~~~~~~~~l~i 80 (359)
T 3ids_C 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR-YDTVHGKFKYEVTTTKSSPSVAKDDTLVV 80 (359)
T ss_dssp CEEEEEECTTHHHHHHHHHHHHTTCBTTTEEEEEEECSSCCHHHHHHHHH-EETTTEECSSCEEEECSCTTSSSCCEEEE
T ss_pred ceEEEEECCChHHHHHHHHhHHHHhcCCCcEEEEEecCCCCHHHHHHHhc-ccCCCCCEeeEEEecccccccCCCCEEEE
Confidence 5899999999999988888 555678999999995 5554444322 2 1 11011
Q ss_pred -----cccC---CHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 60 -----KVYG---SYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 60 -----~~~~---~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
.++. +++++ ..+.++|+|+-+|......+.+...+++| |.|++--|.
T Consensus 81 nGk~I~v~~~e~dp~~i~w~~~gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps 137 (359)
T 3ids_C 81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA 137 (359)
T ss_dssp TTEEEEECCCCSSTTTSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCC
T ss_pred CCEEEEEEEccCCcccCCccccCccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence 1111 22221 11226999999999999999999999999 778887774
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.03 E-value=0.011 Score=53.82 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=49.4
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----CC--CCCcccCCHHHHhcCCCCcEEEE
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----FP--PDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~~--~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+..+||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. ++ +......|+++ ++ +.|+|++
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~--~aDiVvi 93 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TA--NSKLVII 93 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GT--TEEEEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hC--CCCEEEE
Confidence 4568999999999999887776655433335589999988776544431 11 11222467764 55 4999998
Q ss_pred cCC
Q 018020 80 PLP 82 (362)
Q Consensus 80 ~~~ 82 (362)
+..
T Consensus 94 ~aG 96 (331)
T 4aj2_A 94 TAG 96 (331)
T ss_dssp CCS
T ss_pred ccC
Confidence 753
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.01 Score=51.10 Aligned_cols=106 Identities=12% Similarity=0.101 Sum_probs=66.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~~ 82 (362)
+.+|.|+|+|.+|...+..|.+. +. ++ ++|+++++.+.+. .++. .++ ++.+.+-+ -.+.|+|+++++
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~-g~-v~-vid~~~~~~~~~~--~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGS-EV-FV-LAEDENVRKKVLR--SGAN---FVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTS-EE-EE-EESCGGGHHHHHH--TTCE---EEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CCEEEEECCChHHHHHHHHHHhC-Ce-EE-EEECCHHHHHHHh--cCCe---EEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 56899999999999999998766 45 44 7799988887765 4432 222 33333321 247999999999
Q ss_pred CcccHHHHHH-HHHcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAIS-VAQKK--KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~~-al~~g--k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+......+.. |-+.+ .+|++. +.+.+..+.+ ++.|....
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~---~~~~~~~~~l----~~~G~~~v 122 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAE---AERYENIEQL----RMAGADQV 122 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEE---CSSGGGHHHH----HHHTCSEE
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEE---ECCHhHHHHH----HHCCCCEE
Confidence 8755444433 33445 367763 3444444332 34555443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0028 Score=56.67 Aligned_cols=113 Identities=21% Similarity=0.304 Sum_probs=68.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---C---CCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---P---DAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~---~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
..++.|+|+|.+|+..+..|.+. + +|+ +++|+.++++.++++++.. . .+. ..++.+.+ .++|+|+.++
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~-G-~V~-v~~r~~~~~~~l~~~~~~~~~~~~~~~~d-~~~~~~~~--~~~DilVn~a 201 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKD-N-NII-IANRTVEKAEALAKEIAEKLNKKFGEEVK-FSGLDVDL--DGVDIIINAT 201 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSS-S-EEE-EECSSHHHHHHHHHHHHHHHTCCHHHHEE-EECTTCCC--TTCCEEEECS
T ss_pred CCEEEEECchHHHHHHHHHHHHC-C-CEE-EEECCHHHHHHHHHHHhhhcccccceeEE-EeeHHHhh--CCCCEEEECC
Confidence 35799999999999999999877 4 655 7899999888887765310 0 001 12222222 3699999999
Q ss_pred CCcccHH-----H-HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 82 PTSMHVK-----W-AISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 82 ~~~~h~~-----~-~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+...+.. + -...++.|.. +++ +..++.+ ..+.+.+++.|..+.-|
T Consensus 202 g~~~~~~~~~~~~~~~~~l~~~~~-v~D--v~y~p~~-t~ll~~a~~~G~~~~~G 252 (287)
T 1nvt_A 202 PIGMYPNIDVEPIVKAEKLREDMV-VMD--LIYNPLE-TVLLKEAKKVNAKTING 252 (287)
T ss_dssp CTTCTTCCSSCCSSCSTTCCSSSE-EEE--CCCSSSS-CHHHHHHHTTTCEEECT
T ss_pred CCCCCCCCCCCCCCCHHHcCCCCE-EEE--eeeCCcc-CHHHHHHHHCCCEEeCc
Confidence 8765421 1 1233444443 333 2222222 23666788888775544
|
| >3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.03 Score=47.50 Aligned_cols=90 Identities=18% Similarity=0.071 Sum_probs=57.5
Q ss_pred CCceeEEEEE--eccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC-------------HHHHh
Q 018020 5 SQAAIRFGII--GAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS-------------YEALL 69 (362)
Q Consensus 5 ~~~~~~v~ii--G~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~-------------~~e~l 69 (362)
++.++||++. |.|+-....+...+..-+++|++|+...+....+.|+++|+| ...-+ +.+.|
T Consensus 9 ~~~~~ri~vl~SG~gsnl~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~gIp---~~~~~~~~~~~r~~~d~~~~~~l 85 (215)
T 3da8_A 9 PSAPARLVVLASGTGSLLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEASVP---VFTVRLADHPSRDAWDVAITAAT 85 (215)
T ss_dssp CCSSEEEEEEESSCCHHHHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHTTCC---EEECCGGGSSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEEeCChHHHHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHcCCC---EEEeCcccccchhhhhHHHHHHH
Confidence 3457899999 666655566666543224788888765444567789999997 22222 23456
Q ss_pred cCCCCcEEEEcCCCcccHHHHHHHHHcC
Q 018020 70 DDKDIDAVYLPLPTSMHVKWAISVAQKK 97 (362)
Q Consensus 70 ~~~~~D~V~i~~~~~~h~~~~~~al~~g 97 (362)
+..++|+++++.-..--.+-+....+.|
T Consensus 86 ~~~~~Dlivlagy~~iL~~~~l~~~~~~ 113 (215)
T 3da8_A 86 AAHEPDLVVSAGFMRILGPQFLSRFYGR 113 (215)
T ss_dssp HTTCCSEEEEEECCSCCCHHHHHHHTTT
T ss_pred HhhCCCEEEEcCchhhCCHHHHhhccCC
Confidence 6678999999876554444444444433
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.049 Score=51.87 Aligned_cols=89 Identities=18% Similarity=0.086 Sum_probs=58.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC--H------------------HH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS--Y------------------EA 67 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~------------------~e 67 (362)
-+|.|+|+ |.+|...+..++.. +++++++. +++++++. ++++|... +.-+.+ + ++
T Consensus 230 ~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~-~~~~~~~~-~~~lGa~~-vi~~~~~d~~~~~~~~~~~~~~~~~~~~~ 305 (456)
T 3krt_A 230 DNVLIWGASGGLGSYATQFALAG-GANPICVV-SSPQKAEI-CRAMGAEA-IIDRNAEGYRFWKDENTQDPKEWKRFGKR 305 (456)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEE-SSHHHHHH-HHHHTCCE-EEETTTTTCCSEEETTEECHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCeEEEEE-CCHHHHHH-HHhhCCcE-EEecCcCcccccccccccchHHHHHHHHH
Confidence 46999998 99999888888776 78888665 67776664 46677531 011111 0 22
Q ss_pred H---hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEE
Q 018020 68 L---LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 68 ~---l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
+ .....+|+|+.++.. .....+..+++.| +-|++
T Consensus 306 i~~~t~g~g~Dvvid~~G~-~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 306 IRELTGGEDIDIVFEHPGR-ETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp HHHHHTSCCEEEEEECSCH-HHHHHHHHHEEEEEEEEES
T ss_pred HHHHhCCCCCcEEEEcCCc-hhHHHHHHHhhCCcEEEEE
Confidence 2 222479999999887 6666777777665 33443
|
| >3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.037 Score=56.18 Aligned_cols=117 Identities=7% Similarity=0.059 Sum_probs=80.1
Q ss_pred CceeEEEEEeccHHHHHHHHHHh------cCCCcEEEEEEcCCHHH-HHHHHHHcCCC-CCCcccCCHHHHhcC-CCCcE
Q 018020 6 QAAIRFGIIGAADIARKLSRAIT------LAPNAVLSAVASRSLEK-ATNFAKANNFP-PDAKVYGSYEALLDD-KDIDA 76 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~------~~~~~~vv~v~d~~~~~-~~~~~~~~~~~-~~~~~~~~~~e~l~~-~~~D~ 76 (362)
.+..||.+-|+-.- +...+. +.++.++|+.+++...- -+.+ .+|.+ -+..+|.|+.++.+. +++|+
T Consensus 494 ~~~trviV~G~tg~---~~~~ml~~~~~~~~~~~~vVa~V~P~~~g~~~~~--~~G~~~~Gvp~y~sv~ea~~~~p~~Dl 568 (829)
T 3pff_A 494 SRHTKAIVWGMQTR---AVQGMLDFDYVCSRDEPSVAAMVYPFTGDHKQKF--YWGHKEILIPVFKNMADAMRKHPEVDV 568 (829)
T ss_dssp CTTCCEEEESCCHH---HHHHHHHHHHHTTCSSCSEEEEECTTSCSEEEEE--EETTEEEEEEEESSHHHHHHHCTTCCE
T ss_pred cCCCeEEEECCcHH---HHHHHHHhcccccCCCCcEEEEEcCCCCCccceE--EecCCcCCcccCCcHHHHhhccCCCcE
Confidence 35689999997532 333332 23567889999876420 0000 01110 023589999999875 47999
Q ss_pred EEEcCCCcccHHHHHHHHH-cCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 77 VYLPLPTSMHVKWAISVAQ-KKKH-LLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~-~gk~-V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++|++|+..-...+.+|++ +|.+ ++|=. -.....+.++|.+.|+++|+.++
T Consensus 569 aVI~vP~~~v~~av~ea~~~~Gvk~~Viis-~Gf~e~~~~~l~~~A~~~g~rli 621 (829)
T 3pff_A 569 LINFASLRSAYDSTMETMNYAQIRTIAIIA-EGIPEALTRKLIKKADQKGVTII 621 (829)
T ss_dssp EEECCCTTTHHHHHHHHTTSTTCCEEEECC-SCCCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEeCCHHHHHHHHHHHHhhCCCCEEEEeC-CCCCHHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999 9944 54421 23456778899999999998654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.013 Score=50.29 Aligned_cols=91 Identities=10% Similarity=0.249 Sum_probs=54.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.+|||+|||+|.||..++..|++. +.+|+ ++++. ++ +. +.| ++++|+..-
T Consensus 5 ~~mkI~IIG~G~~G~sLA~~L~~~-G~~V~-~~~~~-----------------------~~-~~--~aD--ilavP~~ai 54 (232)
T 3dfu_A 5 PRLRVGIFDDGSSTVNMAEKLDSV-GHYVT-VLHAP-----------------------ED-IR--DFE--LVVIDAHGV 54 (232)
T ss_dssp CCCEEEEECCSCCCSCHHHHHHHT-TCEEE-ECSSG-----------------------GG-GG--GCS--EEEECSSCH
T ss_pred CCcEEEEEeeCHHHHHHHHHHHHC-CCEEE-EecCH-----------------------HH-hc--cCC--EEEEcHHHH
Confidence 468999999999999999999877 67776 45541 12 23 356 778888766
Q ss_pred HHHHHHHHHcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 87 VKWAISVAQKK--KHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 87 ~~~~~~al~~g--k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
.+++......- ..+++.--.+... ++++.+...|..+..++
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~----~vl~~~~~~g~~fvg~H 97 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGI----TVMDPLETSGGIVMSAH 97 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCG----GGGHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHH----HHHHHHHhCCCcEEEee
Confidence 66665544321 2345543222222 23334445666554333
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.024 Score=51.20 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=46.3
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCC--HHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNA-VLSAVASRS--LEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~--~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D 75 (362)
|+..||+|||+|.+|...+..+... +. +|+ ++|++ +++++..+.+. +....+...+++++ ++ +.|
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~~-g~~~v~-l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a-~~--~aD 80 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQK-ELADVV-LVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD-TA--DSD 80 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHT-TCCEEE-EECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GT--TCS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhC-CCCeEE-EEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH-hC--CCC
Confidence 3467999999999999988887665 34 544 89998 55554332221 11111222355543 44 499
Q ss_pred EEEEcCCC
Q 018020 76 AVYLPLPT 83 (362)
Q Consensus 76 ~V~i~~~~ 83 (362)
+|+++...
T Consensus 81 vVIiaag~ 88 (315)
T 3tl2_A 81 VVVITAGI 88 (315)
T ss_dssp EEEECCSC
T ss_pred EEEEeCCC
Confidence 99998643
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0066 Score=51.49 Aligned_cols=94 Identities=15% Similarity=0.256 Sum_probs=60.7
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-CCCcccCC-HHHHhcC-CCCcEEEEcCCCc
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-PDAKVYGS-YEALLDD-KDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-~~~~~~~~-~~e~l~~-~~~D~V~i~~~~~ 84 (362)
|||.|+| +|++|...+..|.+. +.+|++ .+|++++.+.. .++. -... ..| .+++.+. .++|+|+.+....
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~-g~~V~~-~~R~~~~~~~~---~~~~~~~~D-~~d~~~~~~~~~~~~d~vi~~ag~~ 74 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT-DYQIYA-GARKVEQVPQY---NNVKAVHFD-VDWTPEEMAKQLHGMDAIINVSGSG 74 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS-SCEEEE-EESSGGGSCCC---TTEEEEECC-TTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred CeEEEECCCCHHHHHHHHHHHHC-CCEEEE-EECCccchhhc---CCceEEEec-ccCCHHHHHHHHcCCCEEEECCcCC
Confidence 4799999 588999999999876 688775 55766543321 1110 0001 223 4433221 3699999877654
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
. +..+..++.....+++++++.++
T Consensus 75 ~-----------------~~~~~~n~~~~~~l~~a~~~~~~ 98 (219)
T 3dqp_A 75 G-----------------KSLLKVDLYGAVKLMQAAEKAEV 98 (219)
T ss_dssp T-----------------SSCCCCCCHHHHHHHHHHHHTTC
T ss_pred C-----------------CCcEeEeHHHHHHHHHHHHHhCC
Confidence 3 23567788888999999988775
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.015 Score=51.90 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=28.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
+..||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~a-GVG~i~lvD~D~ 70 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRC-GIGKLLLFDYDK 70 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCB
T ss_pred hCCeEEEECcCHHHHHHHHHHHHc-CCCEEEEECCCc
Confidence 357999999999999999988776 444455778754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.018 Score=53.06 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=51.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCc-cc---CCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK-VY---GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~-~~---~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.-+|+|+|+|.+|...+..++.. +++|+ ++|+++++++.+.+.++.. +. .. .++.+.+. ++|+|+.+++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~-Ga~V~-v~dr~~~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~DvVI~~~~~ 240 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGL-GAQVQ-IFDINVERLSYLETLFGSR--VELLYSNSAEIETAVA--EADLLIGAVLV 240 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHHGGG--SEEEECCHHHHHHHHH--TCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEE-EEeCCHHHHHHHHHhhCce--eEeeeCCHHHHHHHHc--CCCEEEECCCc
Confidence 46899999999999999999888 56644 7899999988876655311 10 11 23445554 59999999876
Q ss_pred cc
Q 018020 84 SM 85 (362)
Q Consensus 84 ~~ 85 (362)
..
T Consensus 241 ~~ 242 (361)
T 1pjc_A 241 PG 242 (361)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.021 Score=54.30 Aligned_cols=88 Identities=16% Similarity=0.146 Sum_probs=60.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH----HHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL----EKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~----~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~ 81 (362)
..||.+||.|..|...+..|.+. +++|. ++|... ...+.+ ++.|++ ++ .+.+++++. ++|+|+++.
T Consensus 9 ~k~v~viG~G~sG~s~A~~l~~~-G~~V~-~~D~~~~~~~~~~~~L-~~~gi~----~~~g~~~~~~~~~-~~d~vv~sp 80 (451)
T 3lk7_A 9 NKKVLVLGLARSGEAAARLLAKL-GAIVT-VNDGKPFDENPTAQSL-LEEGIK----VVCGSHPLELLDE-DFCYMIKNP 80 (451)
T ss_dssp TCEEEEECCTTTHHHHHHHHHHT-TCEEE-EEESSCGGGCHHHHHH-HHTTCE----EEESCCCGGGGGS-CEEEEEECT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhC-CCEEE-EEeCCcccCChHHHHH-HhCCCE----EEECCChHHhhcC-CCCEEEECC
Confidence 46899999999998888888877 78866 577633 223333 345653 32 233345442 389999877
Q ss_pred CCcccHHHHHHHHHcCCeEEEe
Q 018020 82 PTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~E 103 (362)
--..+.+.+.+|.++|.+|+.|
T Consensus 81 gi~~~~p~~~~a~~~gi~v~~~ 102 (451)
T 3lk7_A 81 GIPYNNPMVKKALEKQIPVLTE 102 (451)
T ss_dssp TSCTTSHHHHHHHHTTCCEECH
T ss_pred cCCCCChhHHHHHHCCCcEEeH
Confidence 6666667788899999999854
|
| >3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.026 Score=50.97 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=52.2
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CH----------HHHHHHHHHcCCCC-CCcccC--CHHHHhc
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SL----------EKATNFAKANNFPP-DAKVYG--SYEALLD 70 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~----------~~~~~~~~~~~~~~-~~~~~~--~~~e~l~ 70 (362)
||++|||.++|+...+...+..|.+. +++|++|+.. +. ...+.+|+++|+|- ...-+. ++.+.|+
T Consensus 4 m~~~mrivf~Gt~~fa~~~L~~L~~~-~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~~~~~~~~~~~~~~l~ 82 (318)
T 3q0i_A 4 MSQSLRIVFAGTPDFAARHLAALLSS-EHEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVYQPENFKSDESKQQLA 82 (318)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHTS-SSEEEEEECCCC---------CCCHHHHHHHHTTCCEECCSCSCSHHHHHHHH
T ss_pred cccCCEEEEEecCHHHHHHHHHHHHC-CCcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEEccCcCCCHHHHHHHH
Confidence 35689999999999888888888765 6899999863 22 12467899999971 001112 2334566
Q ss_pred CCCCcEEEEcCC
Q 018020 71 DKDIDAVYLPLP 82 (362)
Q Consensus 71 ~~~~D~V~i~~~ 82 (362)
..++|+++++.-
T Consensus 83 ~~~~Dliv~~~y 94 (318)
T 3q0i_A 83 ALNADLMVVVAY 94 (318)
T ss_dssp TTCCSEEEESSC
T ss_pred hcCCCEEEEeCc
Confidence 778999998743
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.14 Score=41.32 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=62.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH---HcCCCCCCcccCCHHHHhcC--CCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK---ANNFPPDAKVYGSYEALLDD--KDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~e~l~~--~~~D~V~i~~ 81 (362)
...+|.-||||. |.......+..|+.+++ .+|.+++..+...+ +.+++..+.+..+..+.+.. ..+|+|++..
T Consensus 25 ~~~~vldiG~G~-G~~~~~l~~~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 102 (178)
T 3hm2_A 25 PHETLWDIGGGS-GSIAIEWLRSTPQTTAV-CFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGG 102 (178)
T ss_dssp TTEEEEEESTTT-THHHHHHHTTSSSEEEE-EECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC
T ss_pred CCCeEEEeCCCC-CHHHHHHHHHCCCCeEE-EEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECC
Confidence 356899999997 65555555566778877 67899876655443 34543222233455444444 5799999765
Q ss_pred CCcc--cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 82 PTSM--HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 82 ~~~~--h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+.+. -.+.+.+.|+.|-.+++.- .+.+....+.+..++.+
T Consensus 103 ~~~~~~~l~~~~~~L~~gG~l~~~~---~~~~~~~~~~~~~~~~~ 144 (178)
T 3hm2_A 103 GLTAPGVFAAAWKRLPVGGRLVANA---VTVESEQMLWALRKQFG 144 (178)
T ss_dssp -TTCTTHHHHHHHTCCTTCEEEEEE---CSHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEe---eccccHHHHHHHHHHcC
Confidence 4432 2333334444454444422 23444444444444444
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.019 Score=52.21 Aligned_cols=75 Identities=17% Similarity=0.271 Sum_probs=45.5
Q ss_pred CceeEEEEEe-ccHHHHHHHHHHhcCCC-cEEEEEEcCCHHHHH--HHHHHcCCCCCCcc---cCCHHHHhcCCCCcEEE
Q 018020 6 QAAIRFGIIG-AADIARKLSRAITLAPN-AVLSAVASRSLEKAT--NFAKANNFPPDAKV---YGSYEALLDDKDIDAVY 78 (362)
Q Consensus 6 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~-~~vv~v~d~~~~~~~--~~~~~~~~~~~~~~---~~~~~e~l~~~~~D~V~ 78 (362)
.+++||+||| +|++|...+..|...+. .+|+ ++|++++... .+.+ ...+..... .+|+.+.+++ .|+|+
T Consensus 6 ~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~-l~Di~~~~~~~~dL~~-~~~~~~v~~~~~t~d~~~al~g--aDvVi 81 (326)
T 1smk_A 6 APGFKVAILGAAGGIGQPLAMLMKMNPLVSVLH-LYDVVNAPGVTADISH-MDTGAVVRGFLGQQQLEAALTG--MDLII 81 (326)
T ss_dssp --CEEEEEETTTSTTHHHHHHHHHHCTTEEEEE-EEESSSHHHHHHHHHT-SCSSCEEEEEESHHHHHHHHTT--CSEEE
T ss_pred CCCCEEEEECCCChHHHHHHHHHHhCCCCCEEE-EEeCCCcHhHHHHhhc-ccccceEEEEeCCCCHHHHcCC--CCEEE
Confidence 3578999999 79999988888766533 4544 5887765222 1222 111101122 2366777775 99999
Q ss_pred EcCCCc
Q 018020 79 LPLPTS 84 (362)
Q Consensus 79 i~~~~~ 84 (362)
++.+..
T Consensus 82 ~~ag~~ 87 (326)
T 1smk_A 82 VPAGVP 87 (326)
T ss_dssp ECCCCC
T ss_pred EcCCcC
Confidence 986543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.1 Score=47.38 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=60.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc--CCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD--DKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~--~~~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...++.++.. ++++++ .++++++.+ +++++|.. .++ .++.+.+. ...+|+|+.++.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~-~~~~~~~~~-~~~~lGa~---~~i~~~~~~~~~~~~~~~g~~d~vid~~g 241 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAM-GLRVAA-VDIDDAKLN-LARRLGAE---VAVNARDTDPAAWLQKEIGGAHGVLVTAV 241 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHT-TCEEEE-EESCHHHHH-HHHHTTCS---EEEETTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEE-EeCCHHHHH-HHHHcCCC---EEEeCCCcCHHHHHHHhCCCCCEEEEeCC
Confidence 4689999999999888888877 678775 567777666 45777743 122 23333332 126899999998
Q ss_pred CcccHHHHHHHHHcC-CeEEE
Q 018020 83 TSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~ 102 (362)
.....+.+..+++.| +-|++
T Consensus 242 ~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 242 SPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp CHHHHHHHHHHEEEEEEEEEC
T ss_pred CHHHHHHHHHHhccCCEEEEe
Confidence 877888888888766 33444
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.029 Score=47.49 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=45.2
Q ss_pred eE-EEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHH-HHHHHHHHc-CCC---CCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IR-FGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLE-KATNFAKAN-NFP---PDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~-v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~~~~~~~~~-~~~---~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+| |.|+|+ |.+|...+..|.+..+.+|+ +.+|+++ +++.++... ++. -+..-.++++++++ ++|+|+.+.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~--~~d~vv~~a 81 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHIT-LYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVT--NAEVVFVGA 81 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEE-EEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHT--TCSEEEESC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEE-EEecCccccchhhccCCCceEEEECCCCCHHHHHHHHc--CCCEEEEcC
Confidence 44 999995 89999999998833478877 4678887 766654221 110 01111133445565 589999877
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
..
T Consensus 82 g~ 83 (221)
T 3r6d_A 82 ME 83 (221)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.12 Score=48.23 Aligned_cols=110 Identities=19% Similarity=0.245 Sum_probs=72.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcC----------CHHHHHHHHHHcCCCC---CCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITL-APNAVLSAVASR----------SLEKATNFAKANNFPP---DAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~----------~~~~~~~~~~~~~~~~---~~~~~~~~~e~l~~~ 72 (362)
+..+|+|.|+|.+|...+..|.+ . +++|++|.|. +.+.+.++.++.+.-. +.. +-+.++++..
T Consensus 208 ~g~~vaVqG~GnVG~~~a~~L~e~~-GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~-~~~~~eil~~- 284 (415)
T 2tmg_A 208 KKATVAVQGFGNVGQFAALLISQEL-GSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGE-RITNEELLEL- 284 (415)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTT-CCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSE-EECHHHHTTC-
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc-CCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCce-EcCchhhhcC-
Confidence 45789999999999988888876 5 8999999998 7888888888765110 111 2256787764
Q ss_pred CCcEEEEcCCCc-ccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 73 DIDAVYLPLPTS-MHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 73 ~~D~V~i~~~~~-~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++|+++-|.... .+.+-+.. -+..+++|- |+ + .++.+++ +++|+.+.
T Consensus 285 ~~DIliP~A~~n~i~~~~a~~---l~ak~V~EgAN~p~--t-~~a~~~l---~~~Gi~~~ 335 (415)
T 2tmg_A 285 DVDILVPAALEGAIHAGNAER---IKAKAVVEGANGPT--T-PEADEIL---SRRGILVV 335 (415)
T ss_dssp SCSEEEECSSTTSBCHHHHTT---CCCSEEECCSSSCB--C-HHHHHHH---HHTTCEEE
T ss_pred CCcEEEecCCcCccCcccHHH---cCCeEEEeCCCccc--C-HHHHHHH---HHCCCEEE
Confidence 799999876543 44433332 255566665 43 2 4444443 46676654
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.018 Score=51.89 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=45.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
||+|||+|.+|...+..+... ++.-+.++|+++++++..+.++ +.+..+..++|+ +.++ +.|+|+++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~--~aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMR--GSDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGT--TCSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhC-CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhC--CCCEEEEeCC
Confidence 699999999999876665433 3322448899887766533332 212222334676 4455 4999999976
Q ss_pred Ccc
Q 018020 83 TSM 85 (362)
Q Consensus 83 ~~~ 85 (362)
...
T Consensus 77 ~~~ 79 (308)
T 2d4a_B 77 IGR 79 (308)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.026 Score=51.28 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=28.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
.-||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 34 ~~~VlIvGaGGlGs~va~~La~a-GVg~ItlvD~D~ 68 (340)
T 3rui_A 34 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT 68 (340)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCB
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCE
Confidence 57899999999999999999877 555566788753
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.05 Score=49.09 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=49.9
Q ss_pred CCccCCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH----------HcC-CCC---------CCc
Q 018020 1 MATESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK----------ANN-FPP---------DAK 60 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~----------~~~-~~~---------~~~ 60 (362)
||.. ..-||+|||+|.||...+..+... +++|+ ++|++++.+++..+ +.| +.. ...
T Consensus 1 Ma~p--~~~~VaViGaG~MG~giA~~~a~~-G~~V~-l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~ 76 (319)
T 3ado_A 1 MASP--AAGDVLIVGSGLVGRSWAMLFASG-GFRVK-LYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLIS 76 (319)
T ss_dssp --------CEEEEECCSHHHHHHHHHHHHT-TCCEE-EECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEE
T ss_pred CCCC--CCCeEEEECCcHHHHHHHHHHHhC-CCeEE-EEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcc
Confidence 5543 346899999999999998888766 78866 89999876543211 112 110 112
Q ss_pred ccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 61 VYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 61 ~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|+++.+++ +|+|+=+.|-..
T Consensus 77 ~~~~l~~a~~~--ad~ViEav~E~l 99 (319)
T 3ado_A 77 SCTNLAEAVEG--VVHIQECVPENL 99 (319)
T ss_dssp EECCHHHHTTT--EEEEEECCCSCH
T ss_pred cccchHhHhcc--CcEEeeccccHH
Confidence 35677777775 888887777654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.13 Score=46.60 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=58.6
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHH----hcCCCCcEEEE
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEAL----LDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~----l~~~~~D~V~i 79 (362)
-+|.|+| +|.+|...+..++.. ++++++ .++++++.+ +++++|.. .++ .++.+. .....+|+|+.
T Consensus 150 ~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~-~~~~~~~~~-~~~~~ga~---~~~~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 150 DYVLLFAAAGGVGLILNQLLKMK-GAHTIA-VASTDEKLK-IAKEYGAE---YLINASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHT-TCEEEE-EESSHHHHH-HHHHTTCS---EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEE-EeCCHHHHH-HHHHcCCc---EEEeCCCchHHHHHHHHhCCCCceEEEE
Confidence 4789999 799999888888876 678775 456777766 56677742 111 233222 22346999999
Q ss_pred cCCCcccHHHHHHHHHcC-CeEEE
Q 018020 80 PLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
++.. ...+.+..+++.| +-|++
T Consensus 224 ~~g~-~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 224 SVGK-DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp CCGG-GGHHHHHHHEEEEEEEEEC
T ss_pred CCCh-HHHHHHHHHhccCCEEEEE
Confidence 9886 5666777777766 44444
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.032 Score=50.75 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=48.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCc------EEEEEEcCC----HHHHHHHHHHcC---CC--CCCcccCCHHHHhc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNA------VLSAVASRS----LEKATNFAKANN---FP--PDAKVYGSYEALLD 70 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~------~vv~v~d~~----~~~~~~~~~~~~---~~--~~~~~~~~~~e~l~ 70 (362)
+++||+|+|+ |++|...+..+...+-+ +|+ ++|++ +++++..+.++. .+ .++...+++.+.++
T Consensus 4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~-l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~ 82 (329)
T 1b8p_A 4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQ-LLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFK 82 (329)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTT
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEE-EEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhC
Confidence 4689999998 99999988887665322 555 68998 665554332221 11 12233477888887
Q ss_pred CCCCcEEEEcCC
Q 018020 71 DKDIDAVYLPLP 82 (362)
Q Consensus 71 ~~~~D~V~i~~~ 82 (362)
+ .|+|+++..
T Consensus 83 ~--aD~Vi~~ag 92 (329)
T 1b8p_A 83 D--ADVALLVGA 92 (329)
T ss_dssp T--CSEEEECCC
T ss_pred C--CCEEEEeCC
Confidence 5 899998754
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.067 Score=50.00 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=75.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+..+|+|.|+|+.|...+..+.+. +.+|++|.|+ +.+.+.++.++.+.-.+. .-+.++++.. ++|+
T Consensus 217 ~gk~vaVqG~GnVG~~~a~~L~~~-GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~--~~~~~e~~~~-~~DV 292 (419)
T 3aoe_E 217 RGARVVVQGLGQVGAAVALHAERL-GMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRL--DLAPEEVFGL-EAEV 292 (419)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCC--CBCTTTGGGS-SCSE
T ss_pred cCCEEEEECcCHHHHHHHHHHHHC-CCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCccee--eccchhhhcc-CceE
Confidence 357899999999999888888877 8999999999 888888888876621111 1133566664 7999
Q ss_pred EEEcCCC-cccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 77 VYLPLPT-SMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 77 V~i~~~~-~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+-|... ..+.+-+... +..+++|- |+ + .++.++ .+++|+.+..
T Consensus 293 liP~A~~n~i~~~~A~~l---~ak~V~EgAN~p~--t-~~A~~~---L~~~Gi~~~P 340 (419)
T 3aoe_E 293 LVLAAREGALDGDRARQV---QAQAVVEVANFGL--N-PEAEAY---LLGKGALVVP 340 (419)
T ss_dssp EEECSCTTCBCHHHHTTC---CCSEEEECSTTCB--C-HHHHHH---HHHHTCEEEC
T ss_pred EEecccccccccchHhhC---CceEEEECCCCcC--C-HHHHHH---HHHCCCEEEC
Confidence 9987554 3444443332 66788886 43 2 445444 4566777653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.017 Score=51.83 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=44.8
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcC----CCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANN----FPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~----~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|+| +|++|...+..+...+...-+.++|+ ++++++..+.+.. ....+++..+-.+.++ +.|+|+++.
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~--~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTA--GSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGT--TCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhC--CCCEEEEcC
Confidence 5899999 99999988877765543332447899 8776543322221 1112233222244455 499999986
Q ss_pred CCc
Q 018020 82 PTS 84 (362)
Q Consensus 82 ~~~ 84 (362)
...
T Consensus 79 g~~ 81 (303)
T 1o6z_A 79 GIP 81 (303)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.48 E-value=0.085 Score=49.55 Aligned_cols=111 Identities=17% Similarity=0.161 Sum_probs=75.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNFP---PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~ 73 (362)
+..||+|.|+|..|...+..|.+. +.+|++|.|+ +.+.+.++.++.+.- ++.. +-+.++++. .+
T Consensus 234 ~g~~vaVqGfGnVG~~~a~~L~e~-GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~-~i~~~ei~~-~~ 310 (440)
T 3aog_A 234 EGARVAIQGFGNVGNAAARAFHDH-GARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAE-PLPAADFWG-LP 310 (440)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSE-ECCHHHHTT-CC
T ss_pred cCCEEEEeccCHHHHHHHHHHHHC-CCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCce-EcCchhhhc-CC
Confidence 357899999999999988888877 8999999998 788888888876521 1112 335678876 47
Q ss_pred CcEEEEcCCC-cccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 74 IDAVYLPLPT-SMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 74 ~D~V~i~~~~-~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+|+++=|... ..+.+-+... +..+++|- |+ + .++.+++ +++|+.+..
T Consensus 311 ~DIlvPcA~~n~i~~~na~~l---~ak~VvEgAN~p~--t-~eA~~iL---~~~GI~~~P 361 (440)
T 3aog_A 311 VEFLVPAALEKQITEQNAWRI---RARIVAEGANGPT--T-PAADDIL---LEKGVLVVP 361 (440)
T ss_dssp CSEEEECSSSSCBCTTTGGGC---CCSEEECCSSSCB--C-HHHHHHH---HHHTCEEEC
T ss_pred CcEEEecCCcCccchhhHHHc---CCcEEEecCcccc--C-HHHHHHH---HHCCCEEEC
Confidence 9999987543 3343333322 56677775 43 2 4555554 466777653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.031 Score=51.64 Aligned_cols=44 Identities=9% Similarity=-0.081 Sum_probs=36.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
..||+|||+|.+|...++.++.. +++|+ ++|+++++++.+.+ +|
T Consensus 184 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~-v~D~~~~~l~~~~~-lG 227 (381)
T 3p2y_A 184 PASALVLGVGVAGLQALATAKRL-GAKTT-GYDVRPEVAEQVRS-VG 227 (381)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHH-TCEEE-EECSSGGGHHHHHH-TT
T ss_pred CCEEEEECchHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHH-cC
Confidence 46999999999999999988887 67755 89999988777654 54
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.032 Score=53.78 Aligned_cols=87 Identities=10% Similarity=0.082 Sum_probs=59.0
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..||.+||.|..|.. .+..|.+. +++|. ++|.........-++.|++ ++ .+.+ .+. ++|+|+++.--.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~-G~~V~-~~D~~~~~~~~~l~~~gi~----~~~g~~~~-~~~--~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE-GYQIS-GSDLAPNSVTQHLTALGAQ----IYFHHRPE-NVL--DASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT-TCEEE-EECSSCCHHHHHHHHTTCE----EESSCCGG-GGT--TCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC-CCeEE-EEECCCCHHHHHHHHCCCE----EECCCCHH-HcC--CCCEEEECCCCC
Confidence 468999999998885 78888877 78876 5676443322223445663 33 2222 343 489999876555
Q ss_pred ccHHHHHHHHHcCCeEEEe
Q 018020 85 MHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~E 103 (362)
...+.+.+|.++|.+|+.|
T Consensus 93 ~~~p~~~~a~~~gi~v~~~ 111 (494)
T 4hv4_A 93 ADNPEIVAAREARIPVIRR 111 (494)
T ss_dssp TTCHHHHHHHHTTCCEEEH
T ss_pred CCCHHHHHHHHCCCCEEcH
Confidence 5666778888999999865
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.013 Score=49.83 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=60.1
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
++||.|+|+ |++|...+..|.+. +.+|+ +.+|++++...+..... +.-+..-.++++++++ ++|+|+.+.....
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~-g~~V~-~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~d~vi~~a~~~~ 79 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR-GFEVT-AVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCK--GADAVISAFNPGW 79 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT-TCEEE-EECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHT--TCSEEEECCCC--
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC-CCEEE-EEEcCcccchhccCceEEEEecCCCHHHHHHHhc--CCCEEEEeCcCCC
Confidence 578999995 88999999999877 57777 45677654332211100 0001111233445565 5999998765431
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.. +..+..++.....+++++++.++
T Consensus 80 ~~---------------~~~~~~n~~~~~~l~~~~~~~~~ 104 (227)
T 3dhn_A 80 NN---------------PDIYDETIKVYLTIIDGVKKAGV 104 (227)
T ss_dssp -------------------CCSHHHHHHHHHHHHHHHTTC
T ss_pred CC---------------hhHHHHHHHHHHHHHHHHHHhCC
Confidence 11 11345578888999999988775
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.027 Score=50.59 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=42.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH---HHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK---ATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.+.||+|||+|.+|...+..+....-+.-+.++|++++. +..+.. +.. +.+..+.|+ +.++ +.|+|+++.
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~-~~~-~~i~~t~d~-~~l~--~aD~Vi~aa 85 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEI-FNL-PNVEISKDL-SASA--HSKVVIFTV 85 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHH-HTC-TTEEEESCG-GGGT--TCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhh-hcC-CCeEEeCCH-HHHC--CCCEEEEcC
Confidence 357999999999998766665433222234489998752 223332 222 234556787 4455 499999986
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.081 Score=48.54 Aligned_cols=131 Identities=8% Similarity=0.013 Sum_probs=75.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CC-HHH----HhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GS-YEA----LLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~e----~l~~~~~D~V~i~~ 81 (362)
-+|.|+|+|.+|...++.++..++++++ +.++++++.+. ++++|.. .++ .+ +.+ +.....+|+|+-++
T Consensus 188 ~~VlV~GaG~vG~~avqlak~~~Ga~Vi-~~~~~~~~~~~-~~~lGa~---~vi~~~~~~~~~v~~~~~g~g~Dvvid~~ 262 (359)
T 1h2b_A 188 AYVAIVGVGGLGHIAVQLLKVMTPATVI-ALDVKEEKLKL-AERLGAD---HVVDARRDPVKQVMELTRGRGVNVAMDFV 262 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEE-EEESSHHHHHH-HHHTTCS---EEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEE-EEeCCHHHHHH-HHHhCCC---EEEeccchHHHHHHHHhCCCCCcEEEECC
Confidence 4799999999999888887766467866 45677776654 4678743 222 22 222 22223699999999
Q ss_pred CCcc--cHHHHHHHHHcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 82 PTSM--HVKWAISVAQKKKHLLMEKPM--ALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 82 ~~~~--h~~~~~~al~~gk~V~~EKP~--~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
.... ..+.+.++ ..|+-|++--+- ..+.. .. -.+++.+. +........+..+-+++ ++|.|-.
T Consensus 263 G~~~~~~~~~~~~~-~~G~~v~~g~~~~~~~~~~------~~-~~~~~~i~-g~~~~~~~~~~~~~~l~-~~g~l~~ 329 (359)
T 1h2b_A 263 GSQATVDYTPYLLG-RMGRLIIVGYGGELRFPTI------RV-ISSEVSFE-GSLVGNYVELHELVTLA-LQGKVRV 329 (359)
T ss_dssp CCHHHHHHGGGGEE-EEEEEEECCCSSCCCCCHH------HH-HHTTCEEE-ECCSCCHHHHHHHHHHH-HTTSCCC
T ss_pred CCchHHHHHHHhhc-CCCEEEEEeCCCCCCCCHH------HH-HhCCcEEE-EecCCCHHHHHHHHHHH-HcCCCcc
Confidence 8764 44444445 556656654322 22322 11 12344443 32222223466777777 6676643
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.069 Score=48.83 Aligned_cols=88 Identities=13% Similarity=0.041 Sum_probs=60.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHH----hcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEAL----LDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~----l~~~~~D~V~i 79 (362)
-+|.|+|+|.+|...+..++.. ++ +|++ +|+++++.+ +++++|.. .++ .++.+- .....+|+|+.
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi~-~~~~~~~~~-~~~~lGa~---~vi~~~~~~~~~~v~~~t~g~g~D~v~d 241 (352)
T 3fpc_A 168 DTVCVIGIGPVGLMSVAGANHL-GAGRIFA-VGSRKHCCD-IALEYGAT---DIINYKNGDIVEQILKATDGKGVDKVVI 241 (352)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT-TCSSEEE-ECCCHHHHH-HHHHHTCC---EEECGGGSCHHHHHHHHTTTCCEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCcEEEE-ECCCHHHHH-HHHHhCCc---eEEcCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 4689999999999888888766 66 5664 678877654 56777753 222 233332 22346999999
Q ss_pred cCCCcccHHHHHHHHHcC-CeEEE
Q 018020 80 PLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
++......+.+.++++.| +-|++
T Consensus 242 ~~g~~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 242 AGGDVHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp CSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred CCCChHHHHHHHHHHhcCCEEEEe
Confidence 999877788888888776 33433
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.00089 Score=60.11 Aligned_cols=81 Identities=10% Similarity=0.118 Sum_probs=48.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||+|||+|.||..++..|.+. +.+|. +++|+++..+. ....|..+ ..+..+..+.+. .++|+|++++|+....
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~-g~~V~-~~~r~~~~~~~-~~~~g~~~-~~~~~~~~~~~~-~~~D~vilavk~~~~~ 76 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQS-LPHTT-LIGRHAKTITY-YTVPHAPA-QDIVVKGYEDVT-NTFDVIIIAVKTHQLD 76 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHH-CTTCE-EEESSCEEEEE-ESSTTSCC-EEEEEEEGGGCC-SCEEEEEECSCGGGHH
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEE-EEEeccCcEEE-EecCCeec-cceecCchHhcC-CCCCEEEEeCCccCHH
Confidence 37899999999999988888755 34444 55676543221 11122111 122233334331 3589999999998766
Q ss_pred HHHHHH
Q 018020 88 KWAISV 93 (362)
Q Consensus 88 ~~~~~a 93 (362)
+.+...
T Consensus 77 ~~l~~l 82 (294)
T 3g17_A 77 AVIPHL 82 (294)
T ss_dssp HHGGGH
T ss_pred HHHHHH
Confidence 555443
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.08 Score=44.42 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=57.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH----HHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE----ALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----e~l~~~~~D~V~i~~~~ 83 (362)
|||.|+|+ |++|...+..|.+. +.+|++ ++|++++...+. -++. .+.-|+. +.+. ++|+|+.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~-g~~V~~-~~R~~~~~~~~~--~~~~---~~~~D~~d~~~~~~~--~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR-GHEVTA-IVRNAGKITQTH--KDIN---ILQKDIFDLTLSDLS--DQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEE-EESCSHHHHHHC--SSSE---EEECCGGGCCHHHHT--TCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC-CCEEEE-EEcCchhhhhcc--CCCe---EEeccccChhhhhhc--CCCEEEECCcC
Confidence 57999995 99999999999877 688775 567776665543 2221 1112221 4454 59999987665
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
... ....+....+.+++++++.+
T Consensus 72 ~~~------------------~~~~~~~~~~~l~~a~~~~~ 94 (221)
T 3ew7_A 72 SPD------------------EAEKHVTSLDHLISVLNGTV 94 (221)
T ss_dssp STT------------------TTTSHHHHHHHHHHHHCSCC
T ss_pred Ccc------------------ccchHHHHHHHHHHHHHhcC
Confidence 321 23446677777777777664
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.093 Score=47.78 Aligned_cols=132 Identities=12% Similarity=0.021 Sum_probs=78.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH------HHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY------EALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~------~e~l~~~~~D~V~i~~ 81 (362)
-+|.|+|+|.+|...++.++.. |+++++ +.++++++.+. ++++|.. .+++.- +++.+...+|+|+.++
T Consensus 172 ~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi-~~~~~~~~~~~-~~~lGa~---~vi~~~~~~~~~~~~~~g~g~D~vid~~ 246 (344)
T 2h6e_A 172 PVVIVNGIGGLAVYTIQILKALMKNITIV-GISRSKKHRDF-ALELGAD---YVSEMKDAESLINKLTDGLGASIAIDLV 246 (344)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEE-EECSCHHHHHH-HHHHTCS---EEECHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCEEE-EEeCCHHHHHH-HHHhCCC---EEeccccchHHHHHhhcCCCccEEEECC
Confidence 4799999999999887777654 367855 56677776654 4567742 222211 1222223699999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEEe---CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 82 PTSMHVKWAISVAQKK-KHLLME---KPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
......+.+..+++.| +-|++- .++..+... + -.+++.+. +........+.++-+++ ++|.|-.
T Consensus 247 g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~------~-~~~~~~i~-g~~~~~~~~~~~~~~l~-~~g~i~~ 314 (344)
T 2h6e_A 247 GTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFD------T-AVWNKKLL-GSNYGSLNDLEDVVRLS-ESGKIKP 314 (344)
T ss_dssp CCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHH------H-HHTTCEEE-ECCSCCHHHHHHHHHHH-HTTSSCC
T ss_pred CChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHH------H-hhCCcEEE-EEecCCHHHHHHHHHHH-HcCCCCc
Confidence 8876677777777765 444433 233334322 1 12344443 33222234567777888 6777743
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.073 Score=48.00 Aligned_cols=131 Identities=11% Similarity=0.060 Sum_probs=76.6
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~~~ 84 (362)
-+|.|+| +|.+|...+..++.. ++++++++ +.++ .++++++|... +.-+.+ +.+.+ ..+|+|+-++...
T Consensus 154 ~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~--~~~~-~~~~~~lGa~~-~i~~~~~~~~~~~~--~g~D~v~d~~g~~ 226 (321)
T 3tqh_A 154 DVVLIHAGAGGVGHLAIQLAKQK-GTTVITTA--SKRN-HAFLKALGAEQ-CINYHEEDFLLAIS--TPVDAVIDLVGGD 226 (321)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE--CHHH-HHHHHHHTCSE-EEETTTSCHHHHCC--SCEEEEEESSCHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEe--ccch-HHHHHHcCCCE-EEeCCCcchhhhhc--cCCCEEEECCCcH
Confidence 4688997 899999888888877 67888776 3444 55677888531 111222 33434 3699999998865
Q ss_pred ccHHHHHHHHHcCCe-EEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 85 MHVKWAISVAQKKKH-LLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 85 ~h~~~~~~al~~gk~-V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
.- ..+.++++.|-. |.+- ..+... +.......++.+.-.........+..+-+++ ++|.|-.
T Consensus 227 ~~-~~~~~~l~~~G~iv~~g---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~l~~ 289 (321)
T 3tqh_A 227 VG-IQSIDCLKETGCIVSVP---TITAGR---VIEVAKQKHRRAFGLLKQFNIEELHYLGKLV-SEDKLRI 289 (321)
T ss_dssp HH-HHHGGGEEEEEEEEECC---STTHHH---HHHHHHHTTCEEECCCCCCCHHHHHHHHHHH-HTTSSCC
T ss_pred HH-HHHHHhccCCCEEEEeC---CCCchh---hhhhhhhcceEEEEEecCCCHHHHHHHHHHH-HCCCccc
Confidence 54 556666666533 3331 112211 2333445566554212222234566777777 6777644
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.036 Score=51.55 Aligned_cols=45 Identities=9% Similarity=-0.033 Sum_probs=36.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
..+|+|||+|.+|...+..++.. +++ |-++|+++++++.+.+ +|.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~-V~~~d~~~~~~~~~~~-~Ga 216 (384)
T 1l7d_A 172 PARVLVFGVGVAGLQAIATAKRL-GAV-VMATDVRAATKEQVES-LGG 216 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCE-EEEECSCSTTHHHHHH-TTC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHH-cCC
Confidence 56899999999999999998888 577 5689998877766544 763
|
| >3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.042 Score=47.11 Aligned_cols=91 Identities=14% Similarity=0.117 Sum_probs=57.9
Q ss_pred ceeEEEEE--eccHHHHHHHHHHhcCC-CcEEEEEEcC-CHHHHHHHHHHcCCCCC---CcccCC-------HHHHhcCC
Q 018020 7 AAIRFGII--GAADIARKLSRAITLAP-NAVLSAVASR-SLEKATNFAKANNFPPD---AKVYGS-------YEALLDDK 72 (362)
Q Consensus 7 ~~~~v~ii--G~G~~g~~~~~~~~~~~-~~~vv~v~d~-~~~~~~~~~~~~~~~~~---~~~~~~-------~~e~l~~~ 72 (362)
+++||+++ |.|..+...+..+.+.. +++|++|+.. ........|+++|+|-- ..-+.+ +.+.|+..
T Consensus 21 ~~~rI~~l~SG~g~~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~ 100 (229)
T 3auf_A 21 HMIRIGVLISGSGTNLQAILDGCREGRIPGRVAVVISDRADAYGLERARRAGVDALHMDPAAYPSRTAFDAALAERLQAY 100 (229)
T ss_dssp TCEEEEEEESSCCHHHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHTTCEEEECCGGGSSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHcCCCEEEECcccccchhhccHHHHHHHHhc
Confidence 46899999 88887777888776543 5788888754 33446678999999710 011121 22345556
Q ss_pred CCcEEEEcCCCcccHHHHHHHHHcC
Q 018020 73 DIDAVYLPLPTSMHVKWAISVAQKK 97 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~al~~g 97 (362)
++|+++++.-..--.+-+....+.|
T Consensus 101 ~~Dliv~agy~~IL~~~~l~~~~~~ 125 (229)
T 3auf_A 101 GVDLVCLAGYMRLVRGPMLTAFPNR 125 (229)
T ss_dssp TCSEEEESSCCSCCCHHHHHHSTTC
T ss_pred CCCEEEEcChhHhCCHHHHhhccCC
Confidence 8999999876554444444444433
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.038 Score=54.00 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=28.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
..||.|||+|..|...+..|... ++.-+.++|.+.
T Consensus 326 ~arVLIVGaGGLGs~vA~~La~a-GVG~ItLvD~D~ 360 (615)
T 4gsl_A 326 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNGT 360 (615)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCCEEEEECCCB
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCC
Confidence 56899999999999999999877 555566888753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.2 Score=45.87 Aligned_cols=130 Identities=9% Similarity=-0.040 Sum_probs=79.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc-------CCHHH-H---hcCCCCcEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY-------GSYEA-L---LDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~e-~---l~~~~~D~V 77 (362)
-+|.|+|+|.+|...++.++.. +++.|.+.++++++.+.+. ++. . .+..| .++.+ + .....+|+|
T Consensus 181 ~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~-~l~-~-~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvv 256 (363)
T 3m6i_A 181 DPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAK-EIC-P-EVVTHKVERLSAEESAKKIVESFGGIEPAVA 256 (363)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHH-HHC-T-TCEEEECCSCCHHHHHHHHHHHTSSCCCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHH-Hhc-h-hcccccccccchHHHHHHHHHHhCCCCCCEE
Confidence 3689999999999888888876 6763445678888776554 443 1 11112 12222 2 223479999
Q ss_pred EEcCCCcccHHHHHHHHHcCCeE-EEe---CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHL-LME---KPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V-~~E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
+.++........+.++++.|-.+ ++- .+...+... .-.+++.+.-.+ ++...+..+-+++ ++|.+
T Consensus 257 id~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-------~~~~~~~i~g~~--~~~~~~~~~~~l~-~~g~i 325 (363)
T 3m6i_A 257 LECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMR-------ASVREVDLQFQY--RYCNTWPRAIRLV-ENGLV 325 (363)
T ss_dssp EECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHH-------HHHHTCEEEECC--SCSSCHHHHHHHH-HTTSS
T ss_pred EECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHH-------HHhcCcEEEEcc--CCHHHHHHHHHHH-HhCCC
Confidence 99999887788888888777544 432 233334321 122334443222 3355677888888 77776
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.23 E-value=0.032 Score=54.45 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=27.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
..||.|||+|..|...+..|... ++.=+.++|.+
T Consensus 327 ~~kVLIVGaGGLGs~va~~La~a-GVG~ItLvD~D 360 (598)
T 3vh1_A 327 NTKVLLLGAGTLGCYVSRALIAW-GVRKITFVDNG 360 (598)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCCEEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 46899999999999999999877 56555678764
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.055 Score=50.06 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=61.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc---CCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~---~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...+..++.. ++ +|+ ++|+++++.+ +++++|... +.-+ .++.+.+. ...+|+|+.+
T Consensus 195 ~~VlV~GaG~vG~~a~q~a~~~-Ga~~Vi-~~~~~~~~~~-~a~~lGa~~-vi~~~~~~~~~~~~i~~~~~gg~D~vid~ 270 (378)
T 3uko_A 195 SNVAIFGLGTVGLAVAEGAKTA-GASRII-GIDIDSKKYE-TAKKFGVNE-FVNPKDHDKPIQEVIVDLTDGGVDYSFEC 270 (378)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH-TCSCEE-EECSCTTHHH-HHHTTTCCE-EECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEE-EEcCCHHHHH-HHHHcCCcE-EEccccCchhHHHHHHHhcCCCCCEEEEC
Confidence 4689999999999888888766 56 566 4567777665 667887531 1111 23333221 1279999999
Q ss_pred CCCcccHHHHHHHHHc--CCeEEEe
Q 018020 81 LPTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~--gk~V~~E 103 (362)
+......+.+..+++. |+-|++-
T Consensus 271 ~g~~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 271 IGNVSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SCCHHHHHHHHHTBCTTTCEEEECS
T ss_pred CCCHHHHHHHHHHhhccCCEEEEEc
Confidence 9987777888888876 4445543
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.071 Score=48.08 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=45.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-CC-CCcc---cCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-PP-DAKV---YGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~~-~~~~---~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+ |++|...+..|...+-..-+.++|+++ ++..+.++. . .+ .... .+|+++.+++ .|+|+++.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~--aDvVvi~a 76 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKG--CDVVVIPA 76 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTT--CSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCC--CCEEEECC
Confidence 58999998 999998888877554333355889876 222223321 1 11 1122 1478888875 99999986
Q ss_pred CCc
Q 018020 82 PTS 84 (362)
Q Consensus 82 ~~~ 84 (362)
...
T Consensus 77 g~~ 79 (314)
T 1mld_A 77 GVP 79 (314)
T ss_dssp SCC
T ss_pred CcC
Confidence 543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.047 Score=50.86 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=36.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
+.||+|||+|.+|...+..++.. +++|+ ++|+++++.+.+.+ +|.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~l-Ga~V~-v~D~~~~~l~~~~~-~G~ 234 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRL-GAVVS-ATDVRPAAKEQVAS-LGA 234 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSTTHHHHHHH-TTC
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHH-cCC
Confidence 57999999999999999999888 67755 89999988776654 553
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.22 Score=45.15 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=76.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhcC--CCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLDD--KDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~~--~~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...+..++.. +++++ +.++++++.+.+ +++|.. .++ .++.+.+.. ..+|+|+.++.
T Consensus 166 ~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi-~~~~~~~~~~~~-~~lGa~---~~~d~~~~~~~~~~~~~~~~~d~vid~~g 239 (339)
T 1rjw_A 166 EWVAIYGIGGLGHVAVQYAKAM-GLNVV-AVDIGDEKLELA-KELGAD---LVVNPLKEDAAKFMKEKVGGVHAAVVTAV 239 (339)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSCHHHHHHH-HHTTCS---EEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEE-EEeCCHHHHHHH-HHCCCC---EEecCCCccHHHHHHHHhCCCCEEEECCC
Confidence 4799999999999888888877 67766 566787776654 567742 121 233332211 36999999998
Q ss_pred CcccHHHHHHHHHcC-CeEEEeCC---CCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 83 TSMHVKWAISVAQKK-KHLLMEKP---MALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~EKP---~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
.....+.+..+++.| +-|++--+ +..+... + -.+++.+. +........+..+-+++ ++|.+-.
T Consensus 240 ~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~---~----~~~~~~i~-g~~~~~~~~~~~~~~l~-~~g~l~~ 306 (339)
T 1rjw_A 240 SKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFD---T----VLNGIKII-GSIVGTRKDLQEALQFA-AEGKVKT 306 (339)
T ss_dssp CHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHH---H----HHTTCEEE-ECCSCCHHHHHHHHHHH-HTTSCCC
T ss_pred CHHHHHHHHHHhhcCCEEEEecccCCCCccCHHH---H----HhCCcEEE-EeccCCHHHHHHHHHHH-HcCCCCc
Confidence 766666667777665 44444222 1112211 1 12344443 32222223466777777 6666643
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.043 Score=51.35 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=35.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
..+|+|||+|.+|...+..++.. +++ |.++|+++++++.+ +++|
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~-Ga~-V~v~D~~~~~~~~~-~~lG 215 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSL-GAI-VRAFDTRPEVKEQV-QSMG 215 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCE-EEEECSCGGGHHHH-HHTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCE-EEEEcCCHHHHHHH-HHcC
Confidence 46899999999999999999888 576 55899998877765 5566
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.018 Score=47.96 Aligned_cols=97 Identities=16% Similarity=0.122 Sum_probs=59.4
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.++|.|+|+ |.+|...++.|.+. +.+|++ .+|++++..... ..++. -+..-.++++++++ ++|+|+.+...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~-g~~V~~-~~r~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~ 77 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQA-GYEVTV-LVRDSSRLPSEG-PRPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGT 77 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEE-EESCGGGSCSSS-CCCSEEEESCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC-CCeEEE-EEeChhhccccc-CCceEEEEecCCCHHHHHHHHc--CCCEEEECccC
Confidence 378999998 99999999999877 578775 457655432110 00110 00011123445555 48999987664
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
... +.|...+......+++++++.++
T Consensus 78 ~~~----------------~~~~~~n~~~~~~~~~~~~~~~~ 103 (206)
T 1hdo_A 78 RND----------------LSPTTVMSEGARNIVAAMKAHGV 103 (206)
T ss_dssp TTC----------------CSCCCHHHHHHHHHHHHHHHHTC
T ss_pred CCC----------------CCccchHHHHHHHHHHHHHHhCC
Confidence 322 23444567778888888887765
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.02 E-value=0.28 Score=44.79 Aligned_cols=130 Identities=10% Similarity=-0.018 Sum_probs=78.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHH----HHhc--CCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYG--SYE----ALLD--DKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~----e~l~--~~~~D~V~i 79 (362)
-+|.|+|+|.+|...++.++.. ++ +|+ +.++++++.+ +++++|.. .+.-+. +.+ ++.+ ...+|+|+.
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi-~~~~~~~~~~-~a~~lGa~-~vi~~~~~~~~~~~~~i~~~~~~g~D~vid 248 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAM-GAAQVV-VTDLSATRLS-KAKEIGAD-LVLQISKESPQEIARKVEGQLGCKPEVTIE 248 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEE-EEESCHHHHH-HHHHTTCS-EEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEE-EECCCHHHHH-HHHHhCCC-EEEcCcccccchHHHHHHHHhCCCCCEEEE
Confidence 4799999999999888888776 66 666 4567777655 45678753 111122 112 2221 146999999
Q ss_pred cCCCcccHHHHHHHHHcCCeE-EEe---CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 80 PLPTSMHVKWAISVAQKKKHL-LME---KPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V-~~E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
++......+.+.++++.|-.+ ++- .+...+... .-.+++.+.-. +++...+..+.+++ ++|.+
T Consensus 249 ~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-------~~~~~~~i~g~--~~~~~~~~~~~~l~-~~g~i 315 (356)
T 1pl8_A 249 CTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLH-------AAIREVDIKGV--FRYCNTWPVAISML-ASKSV 315 (356)
T ss_dssp CSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHH-------HHHTTCEEEEC--CSCSSCHHHHHHHH-HTTSC
T ss_pred CCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHH-------HHhcceEEEEe--cccHHHHHHHHHHH-HcCCC
Confidence 998876677777888776443 332 233344321 12334544322 23345677888888 66764
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.042 Score=50.51 Aligned_cols=82 Identities=13% Similarity=0.079 Sum_probs=54.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-----CHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-----SYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~e~l~~~~~D~V~i~~~~ 83 (362)
-+|.|+|+|.+|...+..++.. ++++++ .++++++.+. ++++|.. .+++ ++.+-+. ..+|+|+.++..
T Consensus 181 ~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~-~~~~~~~~~~-~~~lGa~---~v~~~~~~~~~~~~~~-~~~D~vid~~g~ 253 (360)
T 1piw_A 181 KKVGIVGLGGIGSMGTLISKAM-GAETYV-ISRSSRKRED-AMKMGAD---HYIATLEEGDWGEKYF-DTFDLIVVCASS 253 (360)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCEEEE-EESSSTTHHH-HHHHTCS---EEEEGGGTSCHHHHSC-SCEEEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEE-EcCCHHHHHH-HHHcCCC---EEEcCcCchHHHHHhh-cCCCEEEECCCC
Confidence 4799999999999888888766 678665 4555555544 4557743 2221 3333333 379999999887
Q ss_pred --cccHHHHHHHHHcC
Q 018020 84 --SMHVKWAISVAQKK 97 (362)
Q Consensus 84 --~~h~~~~~~al~~g 97 (362)
....+.+..+++.|
T Consensus 254 ~~~~~~~~~~~~l~~~ 269 (360)
T 1piw_A 254 LTDIDFNIMPKAMKVG 269 (360)
T ss_dssp STTCCTTTGGGGEEEE
T ss_pred CcHHHHHHHHHHhcCC
Confidence 55555566666654
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.14 Score=48.41 Aligned_cols=117 Identities=10% Similarity=0.067 Sum_probs=78.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcC-----CC------CCCcccCCHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANN-----FP------PDAKVYGSYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~-----~~------~~~~~~~~~~ 66 (362)
-.||+|-|+|+.|...+..+.+. +.++|+|.|. +.+....+.+... +. ++.... +.+
T Consensus 252 g~~vaVqG~GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v-~~~ 329 (470)
T 2bma_A 252 KQTAVVSGSGNVALYCVQKLLHL-NVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF-PNE 329 (470)
T ss_dssp GCEEEEECSSHHHHHHHHHHHHT-TCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC-SSC
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe-cCc
Confidence 47899999999999888888877 8999999994 5555554433221 10 012222 224
Q ss_pred HHhcCCCCcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 67 ALLDDKDIDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 67 e~l~~~~~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+++. .++|+.+=| +++..+.+-+...++++..+++|=-=.....+| .+..+++|+.+..+
T Consensus 330 ~~~~-~~~DI~iPcA~~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA---~~~L~~rGIl~~PD 390 (470)
T 2bma_A 330 KPWG-VPCTLAFPCATQNDVDLDQAKLLQKNGCILVGEGANMPSTVDA---INLFKSNNIIYCPS 390 (470)
T ss_dssp CTTS-SCCSEEEECSSTTCBCSHHHHHHHHTTCCEEECCSSSCBCHHH---HHHHHHTTCEEECH
T ss_pred Ceee-cCccEEEeccccCcCCHHHHHHHHhcCcEEEEeCCCCCCCHHH---HHHHHHCCcEEECh
Confidence 6664 479999864 667788888888888898999996211122333 35567788877643
|
| >4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.039 Score=46.94 Aligned_cols=81 Identities=12% Similarity=0.188 Sum_probs=51.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC---HHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS---YEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~---~~e~l~~~~~D~V~i~~~~ 83 (362)
.+-|+.|+|+|..|+..++.+++ .++++++..|.++... .-.|+ .++.+ +.++.+. ..+.++++.++
T Consensus 11 ~~k~v~IiGAGg~g~~v~~~l~~-~~~~~vgfiDd~~~~~----~~~g~----~Vlg~~~~~~~~~~~-~~~~v~iAIg~ 80 (220)
T 4ea9_A 11 AIGGVVIIGGGGHAKVVIESLRA-CGETVAAIVDADPTRR----AVLGV----PVVGDDLALPMLREQ-GLSRLFVAIGD 80 (220)
T ss_dssp CSSCEEEECCSHHHHHHHHHHHH-TTCCEEEEECSCC-------CBTTB----CEEESGGGHHHHHHT-TCCEEEECCCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHh-CCCEEEEEEeCCcccC----cCCCe----eEECCHHHHHHhhcc-cccEEEEecCC
Confidence 34579999999999999999887 5799999999876431 12344 35443 4444443 46777888776
Q ss_pred c-ccHHHHHHHHHcC
Q 018020 84 S-MHVKWAISVAQKK 97 (362)
Q Consensus 84 ~-~h~~~~~~al~~g 97 (362)
. .+.++...+.+.|
T Consensus 81 ~~~R~~i~~~l~~~g 95 (220)
T 4ea9_A 81 NRLRQKLGRKARDHG 95 (220)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC
Confidence 3 2333444444444
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.094 Score=48.97 Aligned_cols=128 Identities=9% Similarity=0.032 Sum_probs=77.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHH----HhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEA----LLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e----~l~~~~~D~V~i 79 (362)
-+|.|+|+|.+|...+..++.. ++ +++ +.++++++.+ +++++|.. .++ .++.+ +.....+|+|+-
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi-~~~~~~~~~~-~~~~lGa~---~vi~~~~~~~~~~i~~~t~g~g~D~vid 288 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHA-GASKVI-LSEPSEVRRN-LAKELGAD---HVIDPTKENFVEAVLDYTNGLGAKLFLE 288 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEE-EECSCHHHHH-HHHHHTCS---EEECTTTSCHHHHHHHHTTTCCCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEE-EECCCHHHHH-HHHHcCCC---EEEcCCCCCHHHHHHHHhCCCCCCEEEE
Confidence 4799999999999888888877 66 666 5677777665 55677743 222 23333 223347999999
Q ss_pred cCCCc-ccHHHHHHHH----HcC-CeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCC
Q 018020 80 PLPTS-MHVKWAISVA----QKK-KHLLMEK---PMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ 150 (362)
Q Consensus 80 ~~~~~-~h~~~~~~al----~~g-k~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g 150 (362)
++... ...+.+..++ +.| +-|++-. +...+... ....++.+.-.........+..+-+++ ++|
T Consensus 289 ~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~-------~~~~~~~i~g~~~~~~~~~~~~~~~ll-~~g 360 (404)
T 3ip1_A 289 ATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEV-------FQVRRAQIVGSQGHSGHGTFPRVISLM-ASG 360 (404)
T ss_dssp CSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHH-------HHHTTCEEEECCCCCSTTHHHHHHHHH-HTT
T ss_pred CCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHH-------HhccceEEEEecCCCchHHHHHHHHHH-HcC
Confidence 99887 4566677777 665 4444432 22223222 123445554333222244677888888 666
|
| >3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=94.95 E-value=0.29 Score=37.45 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=62.7
Q ss_pred CCccCCceeEEEEEeccHHHHHH-HHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc------CC----HHHHh
Q 018020 1 MATESQAAIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY------GS----YEALL 69 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~~-~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~------~~----~~e~l 69 (362)
|++.++++++|.||.-...-... ...+....+++++..++...+..+.+ ++.. ++..+. .+ ++.+-
T Consensus 1 M~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l-~~~~--~dlii~d~~l~~~~g~~~~~~l~ 77 (143)
T 3cnb_A 1 MSLNVKNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLL-HTVK--PDVVMLDLMMVGMDGFSICHRIK 77 (143)
T ss_dssp --------CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHH-HHTC--CSEEEEETTCTTSCHHHHHHHHH
T ss_pred CcccccCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHH-HhcC--CCEEEEecccCCCcHHHHHHHHH
Confidence 66666778999999988755444 44455425788565665444444444 3322 111111 12 22232
Q ss_pred c---CCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 70 D---DKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 70 ~---~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+ .+.+-+|+++... .......++++|..-++.||+ +.++..+.++.+-+..
T Consensus 78 ~~~~~~~~~ii~~s~~~--~~~~~~~~~~~g~~~~l~kP~--~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 78 STPATANIIVIAMTGAL--TDDNVSRIVALGAETCFGKPL--NFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TSTTTTTSEEEEEESSC--CHHHHHHHHHTTCSEEEESSC--CHHHHHHHHHHHHHTT
T ss_pred hCccccCCcEEEEeCCC--CHHHHHHHHhcCCcEEEeCCC--CHHHHHHHHHHHHHhh
Confidence 3 1334455554443 356678899999988999995 6777777666665543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.063 Score=47.20 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=46.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++||.|+|+|++|...+..|.+. +.+|+++ +|++++...+.. .++. .+..|+.++ +..++|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~-g~~V~~~-~r~~~~~~~~~~-~~~~---~~~~D~~d~-~~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQ-GWRIIGT-SRNPDQMEAIRA-SGAE---PLLWPGEEP-SLDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGG-TCEEEEE-ESCGGGHHHHHH-TTEE---EEESSSSCC-CCTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHC-CCEEEEE-EcChhhhhhHhh-CCCe---EEEeccccc-ccCCCCEEEECCCcc
Confidence 47899999999999999999877 6887765 577666655543 2321 122233332 144699999876654
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.29 Score=44.01 Aligned_cols=74 Identities=14% Similarity=0.118 Sum_probs=49.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--CCCc-ccCCHHHHhc---CCCCcEEEEc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--PDAK-VYGSYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--~~~~-~~~~~~e~l~---~~~~D~V~i~ 80 (362)
++++|.+||+|. |......++..|+.+++ ++|.+++-.+...+.++.+ +.+. ...|..+.+. ....|+|++-
T Consensus 89 ~~~rVLdIG~G~-G~la~~la~~~p~~~v~-~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D 166 (317)
T 3gjy_A 89 SKLRITHLGGGA-CTMARYFADVYPQSRNT-VVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRD 166 (317)
T ss_dssp GGCEEEEESCGG-GHHHHHHHHHSTTCEEE-EEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEEC
T ss_pred CCCEEEEEECCc-CHHHHHHHHHCCCcEEE-EEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEEC
Confidence 357999999997 43333344447888866 6899998777666666543 1222 3578888764 3468999985
Q ss_pred CC
Q 018020 81 LP 82 (362)
Q Consensus 81 ~~ 82 (362)
..
T Consensus 167 ~~ 168 (317)
T 3gjy_A 167 VF 168 (317)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.87 E-value=0.19 Score=46.25 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=57.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h~ 87 (362)
-+|.|+|+|.+|...++.++.. +++++ +.++++++.+. ++++|.. .+.-+.+.+.+-+- ..+|+|+.++......
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~-Ga~Vi-~~~~~~~~~~~-a~~lGa~-~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~ 271 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAM-GAHVV-AFTTSEAKREA-AKALGAD-EVVNSRNADEMAAHLKSFDFILNTVAAPHNL 271 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESSGGGHHH-HHHHTCS-EEEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHH-HHHcCCc-EEeccccHHHHHHhhcCCCEEEECCCCHHHH
Confidence 4789999999999888888776 77865 45567666654 4567743 11113332211111 4699999999887667
Q ss_pred HHHHHHHHcCCeE
Q 018020 88 KWAISVAQKKKHL 100 (362)
Q Consensus 88 ~~~~~al~~gk~V 100 (362)
+.+..+++.|-.+
T Consensus 272 ~~~~~~l~~~G~i 284 (369)
T 1uuf_A 272 DDFTTLLKRDGTM 284 (369)
T ss_dssp HHHHTTEEEEEEE
T ss_pred HHHHHHhccCCEE
Confidence 7777777665333
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0024 Score=58.29 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=55.9
Q ss_pred eEEEEEe-ccHHHHHHHHHHh--cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC-CHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIG-AADIARKLSRAIT--LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG-SYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~--~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||+|+| +|.+|+..++.+. .+|..+++.+.++... -+.+. ++- ....+.+ +.++ + ++|+|+.|+|..
T Consensus 1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~-g~~l~--~~g-~~i~v~~~~~~~-~---~~DvV~~a~g~~ 72 (331)
T 2yv3_A 1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSA-GVRLA--FRG-EEIPVEPLPEGP-L---PVDLVLASAGGG 72 (331)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGS-SCEEE--ETT-EEEEEEECCSSC-C---CCSEEEECSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccC-CCEEE--EcC-ceEEEEeCChhh-c---CCCEEEECCCcc
Confidence 5799999 8999999999887 7787777655543110 00000 000 0011211 2222 2 699999999999
Q ss_pred ccHHHHHHHHHcCCeEE
Q 018020 85 MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~ 101 (362)
...+.+...+++|..|+
T Consensus 73 ~s~~~a~~~~~~G~~vI 89 (331)
T 2yv3_A 73 ISRAKALVWAEGGALVV 89 (331)
T ss_dssp HHHHHHHHHHHTTCEEE
T ss_pred chHHHHHHHHHCCCEEE
Confidence 99999999999997544
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.12 Score=46.74 Aligned_cols=88 Identities=16% Similarity=0.123 Sum_probs=58.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc---CCCCcEEEEc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~---~~~~D~V~i~ 80 (362)
-+|.|+|+ |.+|...++.++.. ++++++ .++++++.+.+++++|.. .++ .++.+.+. ...+|+|+.+
T Consensus 151 ~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~-~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~~ 225 (336)
T 4b7c_A 151 ETVVISGAAGAVGSVAGQIARLK-GCRVVG-IAGGAEKCRFLVEELGFD---GAIDYKNEDLAAGLKRECPKGIDVFFDN 225 (336)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT-TCEEEE-EESSHHHHHHHHHTTCCS---EEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEE-EeCCHHHHHHHHHHcCCC---EEEECCCHHHHHHHHHhcCCCceEEEEC
Confidence 47899998 99999888888876 678775 567888888776788753 111 23333221 2369999998
Q ss_pred CCCcccHHHHHHHHHcC-CeEEE
Q 018020 81 LPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
+.. .....+..+++.| +-|++
T Consensus 226 ~g~-~~~~~~~~~l~~~G~iv~~ 247 (336)
T 4b7c_A 226 VGG-EILDTVLTRIAFKARIVLC 247 (336)
T ss_dssp SCH-HHHHHHHTTEEEEEEEEEC
T ss_pred CCc-chHHHHHHHHhhCCEEEEE
Confidence 875 3455555666555 33443
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.16 Score=46.31 Aligned_cols=86 Identities=16% Similarity=0.101 Sum_probs=58.5
Q ss_pred eEEEEE-eccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGII-GAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~ii-G~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l---~~~~~D~V~i~~ 81 (362)
-+|.|+ |+|.+|...+..++.. ++++++ .++++++.+.+ +++|.. .++ +++.+.+ ....+|+|+.++
T Consensus 152 ~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~-~~~~~~~~~~~-~~lGa~---~vi~~~~~~~~~~~~~~~~g~Dvv~d~~ 225 (346)
T 3fbg_A 152 KTLLIINGAGGVGSIATQIAKAY-GLRVIT-TASRNETIEWT-KKMGAD---IVLNHKESLLNQFKTQGIELVDYVFCTF 225 (346)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-TCEEEE-ECCSHHHHHHH-HHHTCS---EEECTTSCHHHHHHHHTCCCEEEEEESS
T ss_pred CEEEEEcCCCHHHHHHHHHHHHc-CCEEEE-EeCCHHHHHHH-HhcCCc---EEEECCccHHHHHHHhCCCCccEEEECC
Confidence 468999 6899999888888866 678775 46777766554 557643 121 2333322 224699999999
Q ss_pred CCcccHHHHHHHHHcCCeE
Q 018020 82 PTSMHVKWAISVAQKKKHL 100 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V 100 (362)
......+.+..+++.|-.+
T Consensus 226 g~~~~~~~~~~~l~~~G~i 244 (346)
T 3fbg_A 226 NTDMYYDDMIQLVKPRGHI 244 (346)
T ss_dssp CHHHHHHHHHHHEEEEEEE
T ss_pred CchHHHHHHHHHhccCCEE
Confidence 8877777788888776444
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.05 Score=46.48 Aligned_cols=101 Identities=17% Similarity=0.229 Sum_probs=62.3
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC-CC-CCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF-PP-DAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~-~~-~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+.++|.|.|+ |++|...+..|.+. +.+|+ +++|++++.+.+... ++ .. ...+.+++.+.+. ++|+|+.+...
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~-G~~V~-~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~--~~D~vi~~ag~ 94 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNK-GHEPV-AMVRNEEQGPELRER-GASDIVVANLEEDFSHAFA--SIDAVVFAAGS 94 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHT-TCEEE-EEESSGGGHHHHHHT-TCSEEEECCTTSCCGGGGT--TCSEEEECCCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhC-CCeEE-EEECChHHHHHHHhC-CCceEEEcccHHHHHHHHc--CCCEEEECCCC
Confidence 4679999997 89999999999876 67877 456887777766542 32 10 0011155566665 59999987654
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
..... .++-+..++.....+++++++.++
T Consensus 95 ~~~~~-------------~~~~~~~n~~~~~~l~~a~~~~~~ 123 (236)
T 3e8x_A 95 GPHTG-------------ADKTILIDLWGAIKTIQEAEKRGI 123 (236)
T ss_dssp CTTSC-------------HHHHHHTTTHHHHHHHHHHHHHTC
T ss_pred CCCCC-------------ccccchhhHHHHHHHHHHHHHcCC
Confidence 32100 011223455666777777766653
|
| >2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.055 Score=45.93 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=50.3
Q ss_pred eEEEEE--eccHHHHHHHHHHhcCC-CcEEEEEEcC-CHHHHHHHHHHcCCCCC---CcccCC-------HHHHhcCCCC
Q 018020 9 IRFGII--GAADIARKLSRAITLAP-NAVLSAVASR-SLEKATNFAKANNFPPD---AKVYGS-------YEALLDDKDI 74 (362)
Q Consensus 9 ~~v~ii--G~G~~g~~~~~~~~~~~-~~~vv~v~d~-~~~~~~~~~~~~~~~~~---~~~~~~-------~~e~l~~~~~ 74 (362)
+||+++ |.|..+...+..+.+.. .+++++|+.. ........|+++|+|-- ..-+.+ +.+.|+..++
T Consensus 2 ~rI~vl~SG~g~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~gIp~~~~~~~~~~~r~~~~~~~~~~l~~~~~ 81 (216)
T 2ywr_A 2 LKIGVLVSGRGSNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKHNVECKVIQRKEFPSKKEFEERMALELKKKGV 81 (216)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHHTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHcCCCEEEeCcccccchhhhhHHHHHHHHhcCC
Confidence 689999 88888878888877543 2588887754 33456778999999710 011111 2234555689
Q ss_pred cEEEEcCCCcc
Q 018020 75 DAVYLPLPTSM 85 (362)
Q Consensus 75 D~V~i~~~~~~ 85 (362)
|+++++.-..-
T Consensus 82 Dliv~a~y~~i 92 (216)
T 2ywr_A 82 ELVVLAGFMRI 92 (216)
T ss_dssp CEEEESSCCSC
T ss_pred CEEEEeCchhh
Confidence 99998866443
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.052 Score=48.94 Aligned_cols=71 Identities=21% Similarity=0.277 Sum_probs=43.5
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHH----HHHHcC-CCCCCcccC---CHHHHhcCCCCcEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASR--SLEKATN----FAKANN-FPPDAKVYG---SYEALLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~----~~~~~~-~~~~~~~~~---~~~e~l~~~~~D~V 77 (362)
|||+|+|+ |++|...+..+...+.+.-+.++|+ ++++++. +.+-.- ....+.+.. ++.+.+++ +|+|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~g--aD~V 78 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE--SDVV 78 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT--CSEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCC--CCEE
Confidence 58999999 9999998888766543343557898 7665543 221100 101123332 24566664 9999
Q ss_pred EEcC
Q 018020 78 YLPL 81 (362)
Q Consensus 78 ~i~~ 81 (362)
+++.
T Consensus 79 i~~A 82 (313)
T 1hye_A 79 IITS 82 (313)
T ss_dssp EECC
T ss_pred EECC
Confidence 9864
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.33 Score=44.13 Aligned_cols=131 Identities=10% Similarity=0.007 Sum_probs=75.7
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHh----cCCCCcEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALL----DDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l----~~~~~D~V~i~~~ 82 (362)
+|.|+|+|.+|...++.++.. ++ +++ +.++++++.+. ++++|... +.-+ .++.+.+ ....+|+|+.++.
T Consensus 170 ~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi-~~~~~~~~~~~-~~~~Ga~~-~~~~~~~~~~~~v~~~~~g~g~D~vid~~g 245 (348)
T 2d8a_A 170 SVLITGAGPLGLLGIAVAKAS-GAYPVI-VSEPSDFRREL-AKKVGADY-VINPFEEDVVKEVMDITDGNGVDVFLEFSG 245 (348)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-TCCSEE-EECSCHHHHHH-HHHHTCSE-EECTTTSCHHHHHHHHTTTSCEEEEEECSC
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEEE-EECCCHHHHHH-HHHhCCCE-EECCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence 699999999999888888877 56 766 46677776654 45666420 0011 2333332 2236999999998
Q ss_pred CcccHHHHHHHHHcCCe-EEEe---CCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc-ChhHHHHHHhhcCCCCc
Q 018020 83 TSMHVKWAISVAQKKKH-LLME---KPMALNVAEFDVILNACEENGVQLMDGTMWVH-NPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~-V~~E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~-~p~~~~~k~~i~~~g~i 152 (362)
.....+.+..+++.|-. |.+- .+...+.. . ..-.+++.+. +...+. ...+..+.+++ ++|.+
T Consensus 246 ~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~--~----~~~~~~~~i~-g~~~~~~~~~~~~~~~l~-~~g~i 312 (348)
T 2d8a_A 246 APKALEQGLQAVTPAGRVSLLGLYPGKVTIDFN--N----LIIFKALTIY-GITGRHLWETWYTVSRLL-QSGKL 312 (348)
T ss_dssp CHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHH--H----HTTTTTCEEE-ECCCCCSHHHHHHHHHHH-HHTCC
T ss_pred CHHHHHHHHHHHhcCCEEEEEccCCCCcccCch--H----HHHhCCcEEE-EecCCCcHHHHHHHHHHH-HcCCC
Confidence 76666777777766533 3332 22223320 0 1112344433 332222 34566777777 56653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.67 Score=38.65 Aligned_cols=114 Identities=14% Similarity=0.172 Sum_probs=70.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH---HcCCCCCCc-ccCCHHHH---hcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK---ANNFPPDAK-VYGSYEAL---LDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~---~~~~~~~~~-~~~~~~e~---l~~~~~D~V~i~ 80 (362)
.-+|.=||||. |.......+..|+.+++ .+|.+++..+...+ ..+++ ++. +..|..++ +....+|+|++.
T Consensus 42 ~~~vLDiGcG~-G~~~~~la~~~p~~~v~-gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 42 NPIHVEVGSGK-GAFVSGMAKQNPDINYI-GIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CCEEEEESCTT-SHHHHHHHHHCTTSEEE-EEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCeEEEEccCc-CHHHHHHHHHCCCCCEE-EEEcCHHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 45788999996 65555556667888877 46888876554433 23432 112 23444443 445579999987
Q ss_pred CCCcc--------------cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 81 LPTSM--------------HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 81 ~~~~~--------------h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
-|.+. -...+..+|+.|-.++++.+ +...+..+.+..++.|..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~~~~~~~~g~~~ 176 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD---NRGLFEYSLVSFSQYGMKL 176 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES---CHHHHHHHHHHHHHHTCEE
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHCCCee
Confidence 66431 23334456667777777643 4556677777777777544
|
| >3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.66 E-value=0.065 Score=51.06 Aligned_cols=68 Identities=9% Similarity=0.152 Sum_probs=55.5
Q ss_pred cccCCHHHHhcCC-CCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 60 KVYGSYEALLDDK-DIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 60 ~~~~~~~e~l~~~-~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+|.++.++.+.+ .+|+++|++|...-...+.+|+++|.+++|= .-....+.-++|.+.|+++|+.++
T Consensus 22 Pv~~~~~~~~~~p~~~DlavI~vPa~~v~~~v~e~~~~Gv~~vii-s~Gf~~~~~~~l~~~A~~~g~rli 90 (480)
T 3dmy_A 22 TQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMF-SDNVTLEDEIQLKTRAREKGLLVM 90 (480)
T ss_dssp EEESSHHHHHHHSTTCCEEEECSCHHHHHHHHHHHHHTTCEEEEC-CCCCCHHHHHHHHHHHHHTTCCEE
T ss_pred cccchHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHhcCCCEEEE-CCCCCHHHHHHHHHHHHHcCCEEE
Confidence 4788888887653 7999999999999999999999999767662 123347777899999999998765
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.64 E-value=0.075 Score=50.59 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=59.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~~ 84 (362)
+..+|.|||.|..|...++.|.+. +.+|+ |+|++ .+..+.+.++.++. -....++ +.|+ +.|+|+++|...
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~-ga~V~-vi~~~~~~~~~~l~~~~~i~---~~~~~~~~~~l~--~~~lVi~at~~~ 83 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEA-GARLT-VNALTFIPQFTVWANEGMLT---LVEGPFDETLLD--SCWLAIAATDDD 83 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT-TBEEE-EEESSCCHHHHHHHTTTSCE---EEESSCCGGGGT--TCSEEEECCSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-cCEEE-EEcCCCCHHHHHHHhcCCEE---EEECCCCccccC--CccEEEEcCCCH
Confidence 356899999999999999999887 67777 44443 23345554444432 1122222 2343 589999998887
Q ss_pred -ccHHHHHHHHHcCCeE
Q 018020 85 -MHVKWAISVAQKKKHL 100 (362)
Q Consensus 85 -~h~~~~~~al~~gk~V 100 (362)
....++..|-++|+.|
T Consensus 84 ~~n~~i~~~a~~~~i~v 100 (457)
T 1pjq_A 84 TVNQRVSDAAESRRIFC 100 (457)
T ss_dssp HHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 5788888888899876
|
| >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.054 Score=49.16 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=50.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-----CHHHHHHHHHHcCCCCCCcccC----------CHHHHhc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-----SLEKATNFAKANNFPPDAKVYG----------SYEALLD 70 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-----~~~~~~~~~~~~~~~~~~~~~~----------~~~e~l~ 70 (362)
|++|||+++|...++...+..+.+. +.+|++|+.. .+...+.+|.++|+| +...+ ++-+.|.
T Consensus 20 ~~~mrIvf~G~~~fa~~~L~~L~~~-~~~i~~Vvt~pd~~~~~~~v~~~A~~~gIp--v~~~~~~~~~~~~~~~~~~~l~ 96 (329)
T 2bw0_A 20 FQSMKIAVIGQSLFGQEVYCHLRKE-GHEVVGVFTVPDKDGKADPLGLEAEKDGVP--VFKYSRWRAKGQALPDVVAKYQ 96 (329)
T ss_dssp -CCCEEEEECCHHHHHHHHHHHHHT-TCEEEEEEECCCCSSCCCHHHHHHHHHTCC--EEECSCCEETTEECHHHHHHHH
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHC-CCeEEEEEeCCCcCCCCCHHHHHHHHcCCC--EEecCcccccccccHHHHHHHH
Confidence 3469999999888877777777665 5899998861 123466788999997 11122 1234455
Q ss_pred CCCCcEEEEcC
Q 018020 71 DKDIDAVYLPL 81 (362)
Q Consensus 71 ~~~~D~V~i~~ 81 (362)
..++|+++++.
T Consensus 97 ~~~~Dliv~a~ 107 (329)
T 2bw0_A 97 ALGAELNVLPF 107 (329)
T ss_dssp TTCCSEEEESS
T ss_pred hcCCCEEEEee
Confidence 67899999864
|
| >3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0 | Back alignment and structure |
|---|
Probab=94.61 E-value=0.13 Score=43.45 Aligned_cols=86 Identities=16% Similarity=0.085 Sum_probs=55.1
Q ss_pred ceeEEEEE--eccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCccc------CC-------HHHHhc
Q 018020 7 AAIRFGII--GAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVY------GS-------YEALLD 70 (362)
Q Consensus 7 ~~~~v~ii--G~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~------~~-------~~e~l~ 70 (362)
+++||+|+ |.|+-....+..+++--+++|++|+...+ ....+.|+++|+| ..+ .+ +.+.|+
T Consensus 4 ~~~riavl~SG~Gsnl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~gIp---~~~~~~~~~~~r~~~d~~~~~~l~ 80 (215)
T 3tqr_A 4 EPLPIVVLISGNGTNLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQADIP---THIIPHEEFPSRTDFESTLQKTID 80 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHTTCC---EEECCGGGSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHcCCC---EEEeCccccCchhHhHHHHHHHHH
Confidence 47899998 66665556666665423589999886433 3445688999997 222 21 234566
Q ss_pred CCCCcEEEEcCCCcccHHHHHHHHH
Q 018020 71 DKDIDAVYLPLPTSMHVKWAISVAQ 95 (362)
Q Consensus 71 ~~~~D~V~i~~~~~~h~~~~~~al~ 95 (362)
..++|+++++.-..--.+-+....+
T Consensus 81 ~~~~Dliv~agy~~il~~~~l~~~~ 105 (215)
T 3tqr_A 81 HYDPKLIVLAGFMRKLGKAFVSHYS 105 (215)
T ss_dssp TTCCSEEEESSCCSCCCHHHHHHTT
T ss_pred hcCCCEEEEccchhhCCHHHHhhcc
Confidence 7789999998765444444444443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.087 Score=48.60 Aligned_cols=129 Identities=12% Similarity=0.121 Sum_probs=81.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhcC------CCCcEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLDD------KDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~~------~~~D~V~ 78 (362)
-+|.|+|+|.+|...+..++.. ++..|.++++++++.+ +++++|.. .++ .++.+.+.. ..+|+|+
T Consensus 184 ~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~-~a~~lGa~---~vi~~~~~~~~~~i~~~~~~~~gg~Dvvi 258 (370)
T 4ej6_A 184 STVAILGGGVIGLLTVQLARLA-GATTVILSTRQATKRR-LAEEVGAT---ATVDPSAGDVVEAIAGPVGLVPGGVDVVI 258 (370)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCHHHHH-HHHHHTCS---EEECTTSSCHHHHHHSTTSSSTTCEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHH-HHHHcCCC---EEECCCCcCHHHHHHhhhhccCCCCCEEE
Confidence 4789999999999888888876 6633446778877655 66777753 222 244443322 3699999
Q ss_pred EcCCCcccHHHHHHHHHcCCe-EEEeC-----CCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 79 LPLPTSMHVKWAISVAQKKKH-LLMEK-----PMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~-V~~EK-----P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
-++......+.+..+++.|-. |++-- ++..+... .-.+++.+.-.+. +...+..+-+++ ++|.+
T Consensus 259 d~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~-------~~~~~~~i~g~~~--~~~~~~~~~~l~-~~g~i 328 (370)
T 4ej6_A 259 ECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFD-------ILFRELRVLGSFI--NPFVHRRAADLV-ATGAI 328 (370)
T ss_dssp ECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHH-------HHHTTCEEEECCS--CTTCHHHHHHHH-HTTCS
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHH-------HHhCCcEEEEecc--ChHHHHHHHHHH-HcCCC
Confidence 999887777888888877644 44432 33334322 2234455443322 334578888888 67766
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.12 Score=47.33 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=26.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
.-||.|||+|..|...+..|... ++.-+.++|.+
T Consensus 118 ~~~VlvvG~GglGs~va~~La~a-Gvg~i~lvD~D 151 (353)
T 3h5n_A 118 NAKVVILGCGGIGNHVSVILATS-GIGEIILIDND 151 (353)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CCCeEEEECCC
Confidence 46899999999999998888766 55445577764
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.29 Score=40.60 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=61.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH---HcCCCCCCc-ccCCHHHHhc-CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK---ANNFPPDAK-VYGSYEALLD-DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~---~~~~~~~~~-~~~~~~e~l~-~~~~D~V~i~~~ 82 (362)
..+|.-||||. |.......+..|..+++ .+|.+++..+...+ ..+++ .+. ...|..+.+. ...+|+|++..+
T Consensus 41 ~~~vLDiG~G~-G~~~~~la~~~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~D~i~~~~~ 117 (204)
T 3e05_A 41 DLVMWDIGAGS-ASVSIEASNLMPNGRIF-ALERNPQYLGFIRDNLKKFVAR-NVTLVEAFAPEGLDDLPDPDRVFIGGS 117 (204)
T ss_dssp TCEEEEETCTT-CHHHHHHHHHCTTSEEE-EEECCHHHHHHHHHHHHHHTCT-TEEEEECCTTTTCTTSCCCSEEEESCC
T ss_pred CCEEEEECCCC-CHHHHHHHHHCCCCEEE-EEeCCHHHHHHHHHHHHHhCCC-cEEEEeCChhhhhhcCCCCCEEEECCC
Confidence 46899999996 65555555556677776 57898876655433 33442 112 2355544443 257999998765
Q ss_pred CcccHHH---HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 83 TSMHVKW---AISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 83 ~~~h~~~---~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
......+ +.+.|+.|-.+++.- .+.....++.+..++.|
T Consensus 118 ~~~~~~~l~~~~~~LkpgG~l~~~~---~~~~~~~~~~~~l~~~g 159 (204)
T 3e05_A 118 GGMLEEIIDAVDRRLKSEGVIVLNA---VTLDTLTKAVEFLEDHG 159 (204)
T ss_dssp TTCHHHHHHHHHHHCCTTCEEEEEE---CBHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHhcCCCeEEEEEe---cccccHHHHHHHHHHCC
Confidence 4322222 223344454444432 23444444444444444
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.19 Score=43.30 Aligned_cols=112 Identities=12% Similarity=0.045 Sum_probs=68.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCc-ccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKA---NNFPPDAK-VYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
..+|.-+|||. |......++. .|..+++ .+|.+++..+...+. ++++..+. ...|+.+.+.+..+|+|+...|
T Consensus 94 ~~~vldiG~G~-G~~~~~l~~~~~~~~~v~-~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~ 171 (255)
T 3mb5_A 94 GDFIVEAGVGS-GALTLFLANIVGPEGRVV-SYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDLP 171 (255)
T ss_dssp TCEEEEECCTT-SHHHHHHHHHHCTTSEEE-EECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECSS
T ss_pred CCEEEEecCCc-hHHHHHHHHHhCCCeEEE-EEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECCC
Confidence 46899999997 5544444444 4567766 578988765544333 45432122 3467777776667999998766
Q ss_pred Ccc-cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 83 TSM-HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 83 ~~~-h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
... -.+.+.++|+.|-.+++.-| +.++..++.+..++.|
T Consensus 172 ~~~~~l~~~~~~L~~gG~l~~~~~---~~~~~~~~~~~l~~~g 211 (255)
T 3mb5_A 172 QPERVVEHAAKALKPGGFFVAYTP---CSNQVMRLHEKLREFK 211 (255)
T ss_dssp CGGGGHHHHHHHEEEEEEEEEEES---SHHHHHHHHHHHHHTG
T ss_pred CHHHHHHHHHHHcCCCCEEEEEEC---CHHHHHHHHHHHHHcC
Confidence 542 45666667777666665433 3455555555555544
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.16 Score=46.41 Aligned_cols=89 Identities=6% Similarity=-0.058 Sum_probs=56.5
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHHcCCCCCCcccC-------CHHHHhcCC-CCcEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKANNFPPDAKVYG-------SYEALLDDK-DIDAV 77 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~~-------~~~e~l~~~-~~D~V 77 (362)
-+|.|+|+ |.+|...++.++.. ++++++++++++. ...++++++|.. .+++ ++.++.... .+|+|
T Consensus 169 ~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~~~~~~~~Dvv 244 (357)
T 1zsy_A 169 DSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRPDIQKLSDRLKSLGAE---HVITEEELRRPEMKNFFKDMPQPRLA 244 (357)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCSCHHHHHHHHHHTTCS---EEEEHHHHHSGGGGGTTSSSCCCSEE
T ss_pred CEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCccchHHHHHHHHhcCCc---EEEecCcchHHHHHHHHhCCCCceEE
Confidence 47999998 99999888887766 7888888877542 234566788853 2332 122222221 48999
Q ss_pred EEcCCCcccHHHHHHHHHcC-CeEEE
Q 018020 78 YLPLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
+-++....-. .+..+++.| +-|++
T Consensus 245 id~~g~~~~~-~~~~~l~~~G~iv~~ 269 (357)
T 1zsy_A 245 LNCVGGKSST-ELLRQLARGGTMVTY 269 (357)
T ss_dssp EESSCHHHHH-HHHTTSCTTCEEEEC
T ss_pred EECCCcHHHH-HHHHhhCCCCEEEEE
Confidence 9998764433 355566555 44444
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.059 Score=47.54 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=55.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||.|+|+ |++|...+..|.+.++.+|+++ +|++++...+.. .++. -+..-.++++++++ ++|+|+.+....
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~-~R~~~~~~~~~~-~~v~~~~~D~~d~~~l~~~~~--~~d~vi~~a~~~ 76 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIG-VRNVEKVPDDWR-GKVSVRQLDYFNQESMVEAFK--GMDTVVFIPSII 76 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEE-ESSGGGSCGGGB-TTBEEEECCTTCHHHHHHHTT--TCSEEEECCCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEE-ECCHHHHHHhhh-CCCEEEEcCCCCHHHHHHHHh--CCCEEEEeCCCC
Confidence 46999995 9999999998887767887755 566654433211 1111 00111123444555 599999876643
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
.... .++...+.++++|++.|+
T Consensus 77 ~~~~-------------------~~~~~~~~l~~aa~~~gv 98 (289)
T 3e48_A 77 HPSF-------------------KRIPEVENLVYAAKQSGV 98 (289)
T ss_dssp CSHH-------------------HHHHHHHHHHHHHHHTTC
T ss_pred ccch-------------------hhHHHHHHHHHHHHHcCC
Confidence 2211 134555667777777664
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.18 Score=44.75 Aligned_cols=72 Identities=15% Similarity=0.104 Sum_probs=44.1
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCC-----HHHHHHHHH--HcCCC---CCCcccCCHHHHhcCCCCcE
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRS-----LEKATNFAK--ANNFP---PDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~-----~~~~~~~~~--~~~~~---~~~~~~~~~~e~l~~~~~D~ 76 (362)
+++|.|+|+ |.+|...++.|.+. +.+|++ .+|+ +++++.+.. ..++. -+..-.+++.++++ ++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~--~~d~ 79 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYV-LFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK--QVDV 79 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEE-ECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT--TCSE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEE-EECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHh--CCCE
Confidence 468999995 99999999998876 577775 4565 555544322 12321 01011123445555 5999
Q ss_pred EEEcCCC
Q 018020 77 VYLPLPT 83 (362)
Q Consensus 77 V~i~~~~ 83 (362)
|+.+...
T Consensus 80 vi~~a~~ 86 (313)
T 1qyd_A 80 VISALAG 86 (313)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 9987654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.12 Score=49.17 Aligned_cols=66 Identities=14% Similarity=0.065 Sum_probs=50.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-.+++|+|+|.+|...+..++.. +++|+ ++|+++.++...+.. +. -..+.++++.. +|+|+.++.+
T Consensus 265 GKtVvVtGaGgIG~aiA~~Laa~-GA~Vi-v~D~~~~~a~~Aa~~-g~-----dv~~lee~~~~--aDvVi~atG~ 330 (488)
T 3ond_A 265 GKVAVVAGYGDVGKGCAAALKQA-GARVI-VTEIDPICALQATME-GL-----QVLTLEDVVSE--ADIFVTTTGN 330 (488)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHT-TC-----EECCGGGTTTT--CSEEEECSSC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EEcCCHHHHHHHHHh-CC-----ccCCHHHHHHh--cCEEEeCCCC
Confidence 35799999999999999999888 67765 789998877665543 32 24577887774 8999977654
|
| >3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.019 Score=54.27 Aligned_cols=111 Identities=14% Similarity=0.055 Sum_probs=66.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~~ 84 (362)
+|||.|||.|......+..+.+.+++.-+.+++.++... ..++..+++ .-+.|++.++ ...++|+|++.....
T Consensus 3 ~mkvlviG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~-~~~~~~~~~---~~~~d~~~l~~~a~~~~id~vv~g~e~~ 78 (431)
T 3mjf_A 3 AMNILIIGNGGREHALGWKAAQSPLADKIYVAPGNAGTA-LEPTLENVD---IAATDIAGLLAFAQSHDIGLTIVGPEAP 78 (431)
T ss_dssp CEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCHHHH-HCTTCEECC---CCTTCHHHHHHHHHHTTEEEEEECSHHH
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCCEEEEECCCHHHh-hhcccceec---CCcCCHHHHHHHHHHhCcCEEEECCchH
Confidence 589999999965556677777888876666777666433 222211122 1245677665 346799988753222
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHH------HHHHHHHHcCCEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFD------VILNACEENGVQL 127 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~------~l~~~a~~~~~~~ 127 (362)
.-..++..+-+.|.+++. .+.+.++ .+.++++++|++.
T Consensus 79 l~~~~~~~l~~~Gi~~~G-----p~~~a~~~~~dK~~~k~~l~~~GIpt 122 (431)
T 3mjf_A 79 LVIGVVDAFRAAGLAIFG-----PTQAAAQLEGSKAFTKDFLARHNIPS 122 (431)
T ss_dssp HHTTHHHHHHHTTCCEES-----CCHHHHHHHHCHHHHHHHHHHTTCSB
T ss_pred HHHHHHHHHHhcCCCeeC-----CCHHHHHHhhCHHHHHHHHHHcCCCC
Confidence 223455555567888773 2333332 2335667788775
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.1 Score=46.88 Aligned_cols=73 Identities=15% Similarity=0.247 Sum_probs=43.7
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHc-CCCCCCccc----CCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIG-AADIARKLSRAITLA-PNAVLSAVASRSLEKATNFAKAN-NFPPDAKVY----GSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~----~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+||| +|.+|...+..+... +-..-+.++|+++ +++..+.++ +.+..+.+. ++..+.+++ .|+|+++.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~--aDivii~a 77 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEG--ADVVLISA 77 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTT--CSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCC--CCEEEEeC
Confidence 5899999 899999888877653 4444455889876 222222221 222212232 233445554 99999986
Q ss_pred CCc
Q 018020 82 PTS 84 (362)
Q Consensus 82 ~~~ 84 (362)
..+
T Consensus 78 g~~ 80 (312)
T 3hhp_A 78 GVA 80 (312)
T ss_dssp SCS
T ss_pred CCC
Confidence 543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.062 Score=45.98 Aligned_cols=74 Identities=18% Similarity=0.147 Sum_probs=43.2
Q ss_pred CceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 6 QAAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 6 ~~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|.+.+|.|.| +|.+|...+..|.+.+..+|+ +++|++++.+..... ++. -+..-.++++++++ ++|+|+.+.
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~-~~~R~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~~~~--~~D~vv~~a 96 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQT-LFARQPAKIHKPYPT-NSQIIMGDVLNHAALKQAMQ--GQDIVYANL 96 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEE-EEESSGGGSCSSCCT-TEEEEECCTTCHHHHHHHHT--TCSEEEEEC
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEE-EEEcChhhhcccccC-CcEEEEecCCCHHHHHHHhc--CCCEEEEcC
Confidence 3457899999 589999999999877447766 456776544321110 100 01111223444555 489998765
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
..
T Consensus 97 ~~ 98 (236)
T 3qvo_A 97 TG 98 (236)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.18 Score=45.84 Aligned_cols=134 Identities=10% Similarity=0.035 Sum_probs=75.3
Q ss_pred eEEEEEecc-HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CH----HHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAA-DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SY----EALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G-~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~----~e~l~~~~~D~V~i~~ 81 (362)
-+|.|+|+| .+|...+..++...+++++ +.++++++.+.+ +++|... +.-+. +. .++.....+|+|+.++
T Consensus 172 ~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi-~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~~~ 248 (347)
T 1jvb_A 172 KTLLVVGAGGGLGTMAVQIAKAVSGATII-GVDVREEAVEAA-KRAGADY-VINASMQDPLAEIRRITESKGVDAVIDLN 248 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCEEE-EEESSHHHHHHH-HHHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CEEEEECCCccHHHHHHHHHHHcCCCeEE-EEcCCHHHHHHH-HHhCCCE-EecCCCccHHHHHHHHhcCCCceEEEECC
Confidence 468999998 8899888888766467766 567787776655 5566320 00111 22 2333213699999998
Q ss_pred CCcccHHHHHHHHHcC-CeEEEeCCC---CCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 82 PTSMHVKWAISVAQKK-KHLLMEKPM---ALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~EKP~---~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
......+.+..+++.| +-|++--+- ..+... .. .+++.+. +........+..+.+++ ++|.|-.
T Consensus 249 g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~------~~-~~~~~i~-g~~~~~~~~~~~~~~l~-~~g~l~~ 316 (347)
T 1jvb_A 249 NSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPL------IT-LSEIQFV-GSLVGNQSDFLGIMRLA-EAGKVKP 316 (347)
T ss_dssp CCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHH------HH-HHTCEEE-ECCSCCHHHHHHHHHHH-HTTSSCC
T ss_pred CCHHHHHHHHHHHhcCCEEEEECCCCCCCCCCHHH------HH-hCceEEE-EEeccCHHHHHHHHHHH-HcCCCCc
Confidence 8765555566666655 334443221 233321 11 2334443 32222223566777777 6777643
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.11 Score=47.43 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=57.9
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh----cCCCCcEEEEcCCC
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL----DDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l----~~~~~D~V~i~~~~ 83 (362)
-+|.|+| +|.+|...+..++.. +++++++ .++++.+ +++++|... +....++.+.+ ....+|+|+.++..
T Consensus 152 ~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~--~~~~~~~-~~~~lGa~~-i~~~~~~~~~~~~~~~~~g~D~vid~~g~ 226 (343)
T 3gaz_A 152 QTVLIQGGGGGVGHVAIQIALAR-GARVFAT--ARGSDLE-YVRDLGATP-IDASREPEDYAAEHTAGQGFDLVYDTLGG 226 (343)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEE--ECHHHHH-HHHHHTSEE-EETTSCHHHHHHHHHTTSCEEEEEESSCT
T ss_pred CEEEEecCCCHHHHHHHHHHHHC-CCEEEEE--eCHHHHH-HHHHcCCCE-eccCCCHHHHHHHHhcCCCceEEEECCCc
Confidence 4799999 699999888888766 7788877 4566655 456677531 11123333332 33479999999885
Q ss_pred cccHHHHHHHHHcC-CeEEEe
Q 018020 84 SMHVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~E 103 (362)
.....+..+++.| +-|.+-
T Consensus 227 -~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 227 -PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp -HHHHHHHHHEEEEEEEEESC
T ss_pred -HHHHHHHHHHhcCCeEEEEc
Confidence 4555666677665 444443
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=94.15 E-value=0.46 Score=44.81 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=56.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC----C-------------------
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG----S------------------- 64 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~----~------------------- 64 (362)
-+|.|+|+ |.+|...+..++.. +++++++. +++++.+. ++++|.. .+++ +
T Consensus 222 ~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~-~~~~~~~~-~~~lGa~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (447)
T 4a0s_A 222 DIVLIWGASGGLGSYAIQFVKNG-GGIPVAVV-SSAQKEAA-VRALGCD---LVINRAELGITDDIADDPRRVVETGRKL 295 (447)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEE-SSHHHHHH-HHHTTCC---CEEEHHHHTCCTTGGGCHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCEEEEEe-CCHHHHHH-HHhcCCC---EEEecccccccccccccccccchhhhHH
Confidence 47899998 99999888888866 78877654 67776665 4677753 1221 1
Q ss_pred HHHHhc--CCCCcEEEEcCCCcccHHHHHHHHHcCCe-EEE
Q 018020 65 YEALLD--DKDIDAVYLPLPTSMHVKWAISVAQKKKH-LLM 102 (362)
Q Consensus 65 ~~e~l~--~~~~D~V~i~~~~~~h~~~~~~al~~gk~-V~~ 102 (362)
.+++.+ ...+|+|+.++... ..+.+..+++.|-. |++
T Consensus 296 ~~~v~~~~g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~ 335 (447)
T 4a0s_A 296 AKLVVEKAGREPDIVFEHTGRV-TFGLSVIVARRGGTVVTC 335 (447)
T ss_dssp HHHHHHHHSSCCSEEEECSCHH-HHHHHHHHSCTTCEEEES
T ss_pred HHHHHHHhCCCceEEEECCCch-HHHHHHHHHhcCCEEEEE
Confidence 122211 24699999988873 45566666666533 443
|
| >3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.12 Score=43.80 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=53.2
Q ss_pred eEEEEE--eccHHHHHHHHHHhcCC-CcEEEEEEcC-CHHHHHHHHHHcCCCC---CCcccC-------CHHHHhcCCCC
Q 018020 9 IRFGII--GAADIARKLSRAITLAP-NAVLSAVASR-SLEKATNFAKANNFPP---DAKVYG-------SYEALLDDKDI 74 (362)
Q Consensus 9 ~~v~ii--G~G~~g~~~~~~~~~~~-~~~vv~v~d~-~~~~~~~~~~~~~~~~---~~~~~~-------~~~e~l~~~~~ 74 (362)
+||+|+ |.|......+..+.+.. +++|++|+.. ........|+++|+|- ...-+. .+-+.|+..++
T Consensus 4 ~ki~vl~sG~g~~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (212)
T 3av3_A 4 KRLAVFASGSGTNFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARENVPAFVFSPKDYPSKAAFESEILRELKGRQI 83 (212)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHTTCCEEECCGGGSSSHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEEECCcHHHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHcCCCEEEeCcccccchhhhHHHHHHHHHhcCC
Confidence 456655 66776777777776543 5888888754 3345677899999971 001111 12244555689
Q ss_pred cEEEEcCCCcccHHHHHHHHHc
Q 018020 75 DAVYLPLPTSMHVKWAISVAQK 96 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~ 96 (362)
|+++++.-..--.+-+....+.
T Consensus 84 Dliv~a~y~~il~~~~l~~~~~ 105 (212)
T 3av3_A 84 DWIALAGYMRLIGPTLLSAYEG 105 (212)
T ss_dssp CEEEESSCCSCCCHHHHHHTTT
T ss_pred CEEEEchhhhhCCHHHHhhhcC
Confidence 9999987655444444444443
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.12 Score=47.12 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=47.9
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCc-----EEEEEEcCCHH--HHHHHHHHc---CCC--CCCcccCCHHHHhcCC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNA-----VLSAVASRSLE--KATNFAKAN---NFP--PDAKVYGSYEALLDDK 72 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~-----~vv~v~d~~~~--~~~~~~~~~---~~~--~~~~~~~~~~e~l~~~ 72 (362)
|+++||+|+|+ |.+|+..+..+...+-+ .-+.++|..+. +++-.+-+. ..+ ......++..+.+++
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~- 100 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDG- 100 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTT-
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCC-
Confidence 56899999996 99999888877654322 23458898653 233332221 221 123456777777775
Q ss_pred CCcEEEEcCC
Q 018020 73 DIDAVYLPLP 82 (362)
Q Consensus 73 ~~D~V~i~~~ 82 (362)
.|+|+|+.-
T Consensus 101 -advVvi~aG 109 (345)
T 4h7p_A 101 -VAIAIMCGA 109 (345)
T ss_dssp -CSEEEECCC
T ss_pred -CCEEEECCC
Confidence 999999653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.22 Score=43.69 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=66.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCc-ccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKA---NNFPPDAK-VYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
..+|.-+|||. |......++. .|..+++ .+|.+++..+...+. +++.+.+. ...|+.+.+....+|+|+...|
T Consensus 113 ~~~VLDiG~G~-G~~~~~la~~~~~~~~v~-~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~~~ 190 (277)
T 1o54_A 113 GDRIIDTGVGS-GAMCAVLARAVGSSGKVF-AYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP 190 (277)
T ss_dssp TCEEEEECCTT-SHHHHHHHHHTTTTCEEE-EECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred CCEEEEECCcC-CHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEECCc
Confidence 35899999998 6544444555 3466766 578888766554433 34321112 2456666665557999998666
Q ss_pred Cc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 83 TS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 83 ~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.. .-.+.+.++|+.|-.+++.-| +..+..++.+..++.|
T Consensus 191 ~~~~~l~~~~~~L~pgG~l~~~~~---~~~~~~~~~~~l~~~g 230 (277)
T 1o54_A 191 DPWNYIDKCWEALKGGGRFATVCP---TTNQVQETLKKLQELP 230 (277)
T ss_dssp CGGGTHHHHHHHEEEEEEEEEEES---SHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHcCCCCEEEEEeC---CHHHHHHHHHHHHHCC
Confidence 54 445556666666656666544 3344455555555544
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.33 Score=44.05 Aligned_cols=132 Identities=14% Similarity=0.115 Sum_probs=76.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHH----hcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEAL----LDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~----l~~~~~D~V~i~~ 81 (362)
-+|.|+|+ |.+|...+..++.. ++++++ .++++++.+.+ +++|... +.-+ .++.+. .....+|+|+.++
T Consensus 168 ~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~-~~~~~~~~~~~-~~~ga~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~~ 243 (343)
T 2eih_A 168 DDVLVMAAGSGVSVAAIQIAKLF-GARVIA-TAGSEDKLRRA-KALGADE-TVNYTHPDWPKEVRRLTGGKGADKVVDHT 243 (343)
T ss_dssp CEEEECSTTSTTHHHHHHHHHHT-TCEEEE-EESSHHHHHHH-HHHTCSE-EEETTSTTHHHHHHHHTTTTCEEEEEESS
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEE-EeCCHHHHHHH-HhcCCCE-EEcCCcccHHHHHHHHhCCCCceEEEECC
Confidence 57999999 88999888888876 678765 56777777655 4566420 0011 122222 2224699999998
Q ss_pred CCcccHHHHHHHHHcC-CeEEEeCCC----CCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 82 PTSMHVKWAISVAQKK-KHLLMEKPM----ALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~EKP~----~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
. ....+.+..+++.| +-|++-.+- ..+... .-.+++.+. +........+..+-+++ ++|.+-.
T Consensus 244 g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-------~~~~~~~~~-g~~~~~~~~~~~~~~l~-~~g~l~~ 311 (343)
T 2eih_A 244 G-ALYFEGVIKATANGGRIAIAGASSGYEGTLPFAH-------VFYRQLSIL-GSTMASKSRLFPILRFV-EEGKLKP 311 (343)
T ss_dssp C-SSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTH-------HHHTTCEEE-ECCSCCGGGHHHHHHHH-HHTSSCC
T ss_pred C-HHHHHHHHHhhccCCEEEEEecCCCCcCccCHHH-------HHhCCcEEE-EecCccHHHHHHHHHHH-HcCCCCC
Confidence 8 55666777777665 444443221 122211 112344443 33322334567777887 6676643
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.16 Score=47.45 Aligned_cols=110 Identities=19% Similarity=0.265 Sum_probs=63.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH---------------HHHHHHHHHcCCC---CCCcccCCHHHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL---------------EKATNFAKANNFP---PDAKVYGSYEAL 68 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~---------------~~~~~~~~~~~~~---~~~~~~~~~~e~ 68 (362)
+..||+|.|+|+.|...+..+.+. +.+||+|.|.++ +.+.++.++.+.- ++.. +-+.+++
T Consensus 211 ~g~~vaVqG~GnVG~~~a~~L~~~-GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~-~i~~~~~ 288 (421)
T 2yfq_A 211 EDAKIAVQGFGNVGTFTVKNIERQ-GGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAE-RITDEEF 288 (421)
T ss_dssp GGSCEEEECCSHHHHHHHHHHHHT-TCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC----------------
T ss_pred cCCEEEEECcCHHHHHHHHHHHHC-CCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCce-EeCccch
Confidence 357899999999999988888877 799999999982 5566666655410 0111 1133566
Q ss_pred hcCCCCcEEEEcCCC-cccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 69 LDDKDIDAVYLPLPT-SMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 69 l~~~~~D~V~i~~~~-~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
+. .++|+++=|... ..+.+-+... +..+++|- |+ + .++.++++ ++|+.+.
T Consensus 289 ~~-~~~DIliP~A~~n~i~~~~A~~l---~ak~VvEgAN~P~--t-~ea~~il~---~~GI~~~ 342 (421)
T 2yfq_A 289 WT-KEYDIIVPAALENVITGERAKTI---NAKLVCEAANGPT--T-PEGDKVLT---ERGINLT 342 (421)
T ss_dssp -------CEEECSCSSCSCHHHHTTC---CCSEEECCSSSCS--C-HHHHHHHH---HHTCEEE
T ss_pred hc-CCccEEEEcCCcCcCCcccHHHc---CCeEEEeCCcccc--C-HHHHHHHH---HCCCEEE
Confidence 65 378988876544 4454444433 55566665 43 2 55665554 6677654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.054 Score=45.67 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=44.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH----HHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE----ALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~----e~l~~~~~D~V~i~~~~ 83 (362)
|||.|+|+ |++|...+..|.+. +.+|++ .+|++++...+.. -++. .+..|+. +.+. ++|+|+.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~-g~~V~~-~~R~~~~~~~~~~-~~~~---~~~~D~~d~~~~~~~--~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR-GHEVLA-VVRDPQKAADRLG-ATVA---TLVKEPLVLTEADLD--SVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEE-EESCHHHHHHHTC-TTSE---EEECCGGGCCHHHHT--TCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC-CCEEEE-EEecccccccccC-CCce---EEecccccccHhhcc--cCCEEEECCcc
Confidence 47999997 89999999999877 678775 5688777664422 1211 1111221 4444 58999987655
Q ss_pred c
Q 018020 84 S 84 (362)
Q Consensus 84 ~ 84 (362)
.
T Consensus 73 ~ 73 (224)
T 3h2s_A 73 P 73 (224)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.68 Score=38.50 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=60.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHH---HHcCCCCCCc-ccCCHHHHhc-CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFA---KANNFPPDAK-VYGSYEALLD-DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~---~~~~~~~~~~-~~~~~~e~l~-~~~~D~V~i~~~ 82 (362)
..+|.-||||. |..-....+. +.+++ .+|.+++..+... +++|++.++. ...|..+.+. .+.+|+|++...
T Consensus 56 ~~~vLDlGcG~-G~~~~~la~~--~~~v~-~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~ 131 (204)
T 3njr_A 56 GELLWDIGGGS-GSVSVEWCLA--GGRAI-TIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGG 131 (204)
T ss_dssp TCEEEEETCTT-CHHHHHHHHT--TCEEE-EEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSC
T ss_pred CCEEEEecCCC-CHHHHHHHHc--CCEEE-EEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCc
Confidence 46899999997 5543333333 66766 5789887665443 3345531222 2466666443 357999997542
Q ss_pred Ccc-cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 83 TSM-HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 83 ~~~-h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
... -.+.+.+.|+.|-.+++.- .+.+...++.+..++.|
T Consensus 132 ~~~~~l~~~~~~LkpgG~lv~~~---~~~~~~~~~~~~l~~~g 171 (204)
T 3njr_A 132 GSQALYDRLWEWLAPGTRIVANA---VTLESETLLTQLHARHG 171 (204)
T ss_dssp CCHHHHHHHHHHSCTTCEEEEEE---CSHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHhcCCCcEEEEEe---cCcccHHHHHHHHHhCC
Confidence 211 2223333444454555432 24555555555555554
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.12 Score=47.49 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=62.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----HHHH--------HHHHHHcCCCCCCcccCCHHHHhcCCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----LEKA--------TNFAKANNFPPDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----~~~~--------~~~~~~~~~~~~~~~~~~~~e~l~~~~~ 74 (362)
+..||.++|+|.+|...++.+... +.+=+.++|++ .++. +.++++.+. .....++.|.+.. .
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~-G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~---~~~~~~L~eav~~--A 264 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDL-GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP---ERLSGDLETALEG--A 264 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHH-TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT---TCCCSCHHHHHTT--C
T ss_pred CCcEEEEECCCHHHHHHHHHHHhC-CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc---cCchhhHHHHHcc--C
Confidence 478999999999999888888776 56445699987 5542 556666542 1346789999986 7
Q ss_pred cEEEEcCC-CcccHHHHHHHHHcCCeEEEe
Q 018020 75 DAVYLPLP-TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 75 D~V~i~~~-~~~h~~~~~~al~~gk~V~~E 103 (362)
|+++-++. .-...++++. ++. .+|+.+
T Consensus 265 DVlIG~Sap~l~t~emVk~-Ma~-~pIIfa 292 (388)
T 1vl6_A 265 DFFIGVSRGNILKPEWIKK-MSR-KPVIFA 292 (388)
T ss_dssp SEEEECSCSSCSCHHHHTT-SCS-SCEEEE
T ss_pred CEEEEeCCCCccCHHHHHh-cCC-CCEEEE
Confidence 99886544 4456666666 443 456654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.28 Score=44.71 Aligned_cols=130 Identities=13% Similarity=0.070 Sum_probs=78.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---C-HHHHhc------CCCCcEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---S-YEALLD------DKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~-~~e~l~------~~~~D~V~ 78 (362)
-+|.|+|+|.+|...++.++.. +++|+ +.++++++.+. ++++|.. .+.-+. + .+++.+ ...+|+|+
T Consensus 170 ~~VlV~GaG~vG~~a~qla~~~-Ga~Vi-~~~~~~~~~~~-~~~lGa~-~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vi 245 (352)
T 1e3j_A 170 TTVLVIGAGPIGLVSVLAAKAY-GAFVV-CTARSPRRLEV-AKNCGAD-VTLVVDPAKEEESSIIERIRSAIGDLPNVTI 245 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHH-HHHTTCS-EEEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEE-EEcCCHHHHHH-HHHhCCC-EEEcCcccccHHHHHHHHhccccCCCCCEEE
Confidence 4789999999999888888776 67754 56778776654 4677753 111122 1 233332 24699999
Q ss_pred EcCCCcccHHHHHHHHHcCCeE-EEe---CCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 79 LPLPTSMHVKWAISVAQKKKHL-LME---KPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V-~~E---KP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
.++......+.+..+++.|-.+ ++- .+...+.. ..-.+++.+.-. +++...+..+.+++ ++|.+
T Consensus 246 d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-------~~~~~~~~i~g~--~~~~~~~~~~~~l~-~~g~i 313 (352)
T 1e3j_A 246 DCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLV-------NACAREIDIKSV--FRYCNDYPIALEMV-ASGRC 313 (352)
T ss_dssp ECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHH-------HHHTTTCEEEEC--CSCSSCHHHHHHHH-HTTSC
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHH-------HHHhcCcEEEEe--ccchHHHHHHHHHH-HcCCC
Confidence 9998876667777788776444 332 22333331 122334444322 23455677788888 66764
|
| >2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.096 Score=46.95 Aligned_cols=70 Identities=11% Similarity=0.123 Sum_probs=49.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC-HH-------HHHHHHHHcCCCCCCcccCC-----HHHHhcCCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRS-LE-------KATNFAKANNFPPDAKVYGS-----YEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~-~~-------~~~~~~~~~~~~~~~~~~~~-----~~e~l~~~~~D 75 (362)
|||++.|++.+|...+..|.+. +++|++|+... .. ..+.+|+++|+| +...++ +.+.|+..++|
T Consensus 1 mrivf~gt~~fa~~~L~~L~~~-~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~~~~~D 77 (305)
T 2bln_A 1 MKTVVFAYHDMGCLGIEALLAA-GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP--VYAPDNVNHPLWVERIAQLSPD 77 (305)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT-TCEEEEEECCCC------CCCCHHHHHHHHTCC--EECCSCCCSHHHHHHHHHTCCS
T ss_pred CEEEEEEcCHHHHHHHHHHHHC-CCcEEEEEcCCCCCCCCcCccHHHHHHHHcCCC--EECCCcCCcHHHHHHHHhcCCC
Confidence 6899999999988888888765 68999988642 21 267889999997 111222 23455556899
Q ss_pred EEEEcC
Q 018020 76 AVYLPL 81 (362)
Q Consensus 76 ~V~i~~ 81 (362)
+++++.
T Consensus 78 liv~~~ 83 (305)
T 2bln_A 78 VIFSFY 83 (305)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 999864
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.036 Score=50.89 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=43.3
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCc-ccCCHHHHhcCCCCcEEEEc
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAK-VYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~-~~~~~~e~l~~~~~D~V~i~ 80 (362)
|+++||.|+|+ |++|...+..|.+.++.+|+++ +++.++...+...-++. -+.. -.++++++++ ++|+|+-+
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~-~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~--~~d~Vih~ 98 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGM-DMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVK--KCDVILPL 98 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEE-ESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHH--HCSEEEEC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEE-eCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhc--cCCEEEEc
Confidence 44679999994 9999999999887767888865 56554443332211211 0001 1122344555 58999864
Q ss_pred C
Q 018020 81 L 81 (362)
Q Consensus 81 ~ 81 (362)
.
T Consensus 99 A 99 (372)
T 3slg_A 99 V 99 (372)
T ss_dssp B
T ss_pred C
Confidence 3
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.90 E-value=0.43 Score=43.49 Aligned_cols=90 Identities=13% Similarity=0.092 Sum_probs=56.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~---~~~~D~V~i~~ 81 (362)
-+|.|+|+ |.+|...+..++.. ++ ++++ +++++++.+.+.+++|... +.-+ .++.+.+. ...+|+|+.++
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~-~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~d~vi~~~ 238 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFL-GCSRVVG-ICGTHEKCILLTSELGFDA-AINYKKDNVAEQLRESCPAGVDVYFDNV 238 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHT-TCSEEEE-EESCHHHHHHHHHTSCCSE-EEETTTSCHHHHHHHHCTTCEEEEEESC
T ss_pred cEEEEECCCcHHHHHHHHHHHHC-CCCeEEE-EeCCHHHHHHHHHHcCCce-EEecCchHHHHHHHHhcCCCCCEEEECC
Confidence 57899998 99999888888876 67 7764 5677777777766577420 0011 23333221 12699999988
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
.. ...+.+..+++.| +-|++
T Consensus 239 G~-~~~~~~~~~l~~~G~iv~~ 259 (357)
T 2zb4_A 239 GG-NISDTVISQMNENSHIILC 259 (357)
T ss_dssp CH-HHHHHHHHTEEEEEEEEEC
T ss_pred CH-HHHHHHHHHhccCcEEEEE
Confidence 75 3444555555554 44444
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.37 Score=43.48 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=56.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHH----HHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYE----ALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~----e~l~~~~~D~V~i~~ 81 (362)
-+|.|+|+ |.+|...+..++.. ++++++ +++++++.+.+ +++|... +.-+ .++. +......+|+|+.++
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~-~~~~~~~~~~~-~~~g~~~-~~d~~~~~~~~~i~~~~~~~~~d~vi~~~ 222 (333)
T 1wly_A 147 DYVLIHAAAGGMGHIMVPWARHL-GATVIG-TVSTEEKAETA-RKLGCHH-TINYSTQDFAEVVREITGGKGVDVVYDSI 222 (333)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHT-TCEEEE-EESSHHHHHHH-HHHTCSE-EEETTTSCHHHHHHHHHTTCCEEEEEECS
T ss_pred CEEEEECCccHHHHHHHHHHHHC-CCEEEE-EeCCHHHHHHH-HHcCCCE-EEECCCHHHHHHHHHHhCCCCCeEEEECC
Confidence 46899995 99999988888877 677664 56787776655 4455320 0001 1222 222234699999998
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
.. ...+.+..+++.| +-|++
T Consensus 223 g~-~~~~~~~~~l~~~G~iv~~ 243 (333)
T 1wly_A 223 GK-DTLQKSLDCLRPRGMCAAY 243 (333)
T ss_dssp CT-TTHHHHHHTEEEEEEEEEC
T ss_pred cH-HHHHHHHHhhccCCEEEEE
Confidence 87 5566677777665 44444
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.053 Score=47.78 Aligned_cols=104 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
++||.|+|+|++|...+..|.+. +.+|+++. ++++... .++. -+..-.++++++++. ++|+|+.+....
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~-----~~~~~~~~Dl~d~~~~~~~~~~-~~d~vih~a~~~ 74 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTAQ-GHEVTGLR-RSAQPMP-----AGVQTLIADVTRPDTLASIVHL-RPEILVYCVAAS 74 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT-TCCEEEEE-CTTSCCC-----TTCCEEECCTTCGGGCTTGGGG-CCSEEEECHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHHHC-CCEEEEEe-CCccccc-----cCCceEEccCCChHHHHHhhcC-CCCEEEEeCCCC
Confidence 57899999999999999999877 67877654 5543210 1111 011112233344442 599998754321
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC--EEEEeeec
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV--QLMDGTMW 133 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~--~~~v~~~~ 133 (362)
... -++-...++.....++++|++.++ .+++....
T Consensus 75 ----------~~~----~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~ 111 (286)
T 3gpi_A 75 ----------EYS----DEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTG 111 (286)
T ss_dssp ----------HHC---------CCSHHHHHHHHHHTTTSCCCEEEEEEEGG
T ss_pred ----------CCC----HHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccE
Confidence 011 133346689999999999998775 34444433
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=93.85 E-value=0.12 Score=48.57 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=45.3
Q ss_pred eeEEEEEeccHH-HHHHHHHHhc----CCCcEEEEEEcCCHHHHHH---HHHHc-CCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADI-ARKLSRAITL----APNAVLSAVASRSLEKATN---FAKAN-NFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~-g~~~~~~~~~----~~~~~vv~v~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
++||+|||+|+. +..++..+.. .+..+| .++|.++++++. ++... .....+..++|+.+.+++ .|+|+
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el-~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~--AD~Vi 78 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEV-IFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD--AKYVI 78 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEE-EEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT--CSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEE-EEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCC--CCEEE
Confidence 579999999984 2233333332 223454 499999988654 22211 100112335788888886 99999
Q ss_pred EcCCCc
Q 018020 79 LPLPTS 84 (362)
Q Consensus 79 i~~~~~ 84 (362)
++....
T Consensus 79 itagvg 84 (417)
T 1up7_A 79 FQFRPG 84 (417)
T ss_dssp ECCCTT
T ss_pred EcCCCC
Confidence 998654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.11 Score=47.09 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=44.2
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCc------EEEEEEcCCH--HHHHHHHHHc---CCC--CCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNA------VLSAVASRSL--EKATNFAKAN---NFP--PDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~------~vv~v~d~~~--~~~~~~~~~~---~~~--~~~~~~~~~~e~l~~~ 72 (362)
++|||.|+|+ |++|...+..|...+.+ +|+ ++|+.+ ++.+..+.+. .++ .++...+++.+.++
T Consensus 3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~-l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~-- 79 (327)
T 1y7t_A 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQ-LLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFK-- 79 (327)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEE-EECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTT--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEE-EEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhC--
Confidence 3689999996 99999988888765322 655 578763 3333222211 111 11222356777776
Q ss_pred CCcEEEEcC
Q 018020 73 DIDAVYLPL 81 (362)
Q Consensus 73 ~~D~V~i~~ 81 (362)
++|+|+.+.
T Consensus 80 ~~D~Vih~A 88 (327)
T 1y7t_A 80 DADYALLVG 88 (327)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEECC
Confidence 499999863
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.79 E-value=0.28 Score=41.92 Aligned_cols=91 Identities=9% Similarity=-0.018 Sum_probs=50.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCc-ccCCHHHHh-cCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDAK-VYGSYEALL-DDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~-~~~~~~e~l-~~~~~D~V~i~~~ 82 (362)
..+|..+|+|. |......++. ..+++ .+|.+++..+...+. .++.+.+. ...|+.+.+ ....+|+|+...|
T Consensus 92 ~~~vldiG~G~-G~~~~~l~~~--~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 167 (248)
T 2yvl_A 92 EKRVLEFGTGS-GALLAVLSEV--AGEVW-TFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVDVR 167 (248)
T ss_dssp TCEEEEECCTT-SHHHHHHHHH--SSEEE-EECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEECSS
T ss_pred CCEEEEeCCCc-cHHHHHHHHh--CCEEE-EEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEECCc
Confidence 45899999995 6544444444 45655 678888776654433 34422222 235555554 4457999998665
Q ss_pred Cc-ccHHHHHHHHHcCCeEEE
Q 018020 83 TS-MHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 83 ~~-~h~~~~~~al~~gk~V~~ 102 (362)
.. .-.+.+.++|+.|-.+++
T Consensus 168 ~~~~~l~~~~~~L~~gG~l~~ 188 (248)
T 2yvl_A 168 EPWHYLEKVHKSLMEGAPVGF 188 (248)
T ss_dssp CGGGGHHHHHHHBCTTCEEEE
T ss_pred CHHHHHHHHHHHcCCCCEEEE
Confidence 43 233333344444433333
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.14 Score=45.52 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=50.1
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCC------HHHHHHHHH--HcCCC---CCCcccCCHHHHhcCCCCc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRS------LEKATNFAK--ANNFP---PDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~------~~~~~~~~~--~~~~~---~~~~~~~~~~e~l~~~~~D 75 (362)
+++|.|+|+ |.+|...++.|.+. +.+|++ .+|+ +++++.+.. ..++. -+..-.+++.++++ ++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~-l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~d 79 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDL-GHPTFL-LVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVK--NVD 79 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHT-TCCEEE-ECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHH--TCS
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEE-EECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHc--CCC
Confidence 467999996 99999999998877 477664 4554 444433321 12321 00011123444555 499
Q ss_pred EEEEcCCCc---ccHHHHHHHHHcC
Q 018020 76 AVYLPLPTS---MHVKWAISVAQKK 97 (362)
Q Consensus 76 ~V~i~~~~~---~h~~~~~~al~~g 97 (362)
+|+.+.... ....++..|.++|
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g 104 (308)
T 1qyc_A 80 VVISTVGSLQIESQVNIIKAIKEVG 104 (308)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHC
T ss_pred EEEECCcchhhhhHHHHHHHHHhcC
Confidence 999887643 2344555555555
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.11 Score=46.52 Aligned_cols=85 Identities=13% Similarity=0.078 Sum_probs=48.0
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHH-HHHHHH--HHcCCC---CCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLE-KATNFA--KANNFP---PDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~-~~~~~~--~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.+|.|+|+ |.+|...++.|.+. +.+|+++ +|+++ +.+.+. ...++. -+..-.+++.++++ ++|+|+.+.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l-~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~--~~d~vi~~a 87 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL-GHPTYVF-TRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMK--KVDVVISAL 87 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT-TCCEEEE-ECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CeEEEECCCchHHHHHHHHHHHC-CCcEEEE-ECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHc--CCCEEEECC
Confidence 37999996 99999999998877 5777754 45542 222221 122321 00011123445555 599999877
Q ss_pred CCc---ccHHHHHHHHHcC
Q 018020 82 PTS---MHVKWAISVAQKK 97 (362)
Q Consensus 82 ~~~---~h~~~~~~al~~g 97 (362)
... ....++..|.++|
T Consensus 88 ~~~~~~~~~~l~~aa~~~g 106 (318)
T 2r6j_A 88 AFPQILDQFKILEAIKVAG 106 (318)
T ss_dssp CGGGSTTHHHHHHHHHHHC
T ss_pred chhhhHHHHHHHHHHHhcC
Confidence 642 2334444444444
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=0.41 Score=44.43 Aligned_cols=87 Identities=13% Similarity=0.145 Sum_probs=56.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHH-Hh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEA-LL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e-~l---~~~~~D~V~i~~ 81 (362)
-+|.|+|+|.+|...++.++.. ++..|.+.|+++++.+. ++++|.. +..+. ++.+ +. ....+|+|+-++
T Consensus 187 ~~VlV~GaG~vG~~aiqlAk~~-Ga~~Vi~~~~~~~~~~~-a~~lGa~--~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~ 262 (398)
T 1kol_A 187 STVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAH-AKAQGFE--IADLSLDTPLHEQIAALLGEPEVDCAVDAV 262 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHH-HHHTTCE--EEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCeEEEEcCCHHHHHH-HHHcCCc--EEccCCcchHHHHHHHHhCCCCCCEEEECC
Confidence 4789999999999888888877 66334456788776654 4678752 11222 1333 22 224699999998
Q ss_pred CCcc---------------cHHHHHHHHHcCCe
Q 018020 82 PTSM---------------HVKWAISVAQKKKH 99 (362)
Q Consensus 82 ~~~~---------------h~~~~~~al~~gk~ 99 (362)
.... ..+.+.++++.|-.
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~ 295 (398)
T 1kol_A 263 GFEARGHGHEGAKHEAPATVLNSLMQVTRVAGK 295 (398)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEE
T ss_pred CCcccccccccccccchHHHHHHHHHHHhcCCE
Confidence 7652 45666677766533
|
| >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.15 Score=45.96 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=51.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CH----------HHHHHHHHHcCCCCCCcccCC-----HHHHhc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SL----------EKATNFAKANNFPPDAKVYGS-----YEALLD 70 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~----------~~~~~~~~~~~~~~~~~~~~~-----~~e~l~ 70 (362)
++|||+++|++..+...+..|.+. +.+|++|+.. +. ...+.+|.++|+| +....+ +.+.|.
T Consensus 2 ~~mrIvf~Gt~~fa~~~L~~L~~~-~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~ 78 (314)
T 1fmt_A 2 ESLRIIFAGTPDFAARHLDALLSS-GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLP--VFQPVSLRPQENQQLVA 78 (314)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHT-TCEEEEEECCCCBC------CBCCHHHHHHHHTTCC--EECCSCSCSHHHHHHHH
T ss_pred CCCEEEEEecCHHHHHHHHHHHHC-CCcEEEEEeCCCCccccccccCcCHHHHHHHHcCCc--EEecCCCCCHHHHHHHH
Confidence 479999999999888888888765 6899998863 21 2467889999997 111122 224455
Q ss_pred CCCCcEEEEcCC
Q 018020 71 DKDIDAVYLPLP 82 (362)
Q Consensus 71 ~~~~D~V~i~~~ 82 (362)
..++|+++++.-
T Consensus 79 ~~~~Dliv~~~y 90 (314)
T 1fmt_A 79 ELQADVMVVVAY 90 (314)
T ss_dssp HTTCSEEEEESC
T ss_pred hcCCCEEEEeec
Confidence 568999998644
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=93.64 E-value=0.098 Score=48.86 Aligned_cols=113 Identities=17% Similarity=0.191 Sum_probs=73.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHHHHHHHHcCCCCCC-cccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKATNFAKANNFPPDA-KVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~~~~~~~~~~~~~~-~~~~~~~e~l~~~~~D 75 (362)
+..||+|-|+|+.|...+..+.+. +.++|+|+|.+ .+.+.++.++.+.-.+. .-+-+.++++.. ++|
T Consensus 220 ~g~~vaVqG~GnVG~~aa~~l~e~-GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~-~~D 297 (424)
T 3k92_A 220 QNARIIIQGFGNAGSFLAKFMHDA-GAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEK-DCD 297 (424)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHH-TCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHS-CCS
T ss_pred ccCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceec-ccc
Confidence 457899999999999888888776 89999999987 77777766655410000 112356788875 799
Q ss_pred EEEEcCC-CcccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 76 AVYLPLP-TSMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 76 ~V~i~~~-~~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+.+=|.. +..+.+-+... +..+++|- |+ + .++.+ ..+++|+.+..+
T Consensus 298 IliPcA~~n~I~~~~a~~l---~ak~V~EgAN~p~--t-~eA~~---iL~~rGI~~~PD 347 (424)
T 3k92_A 298 ILVPAAISNQITAKNAHNI---QASIVVERANGPT--T-IDATK---ILNERGVLLVPD 347 (424)
T ss_dssp EEEECSCSSCBCTTTGGGC---CCSEEECCSSSCB--C-HHHHH---HHHHTTCEEECH
T ss_pred EEeecCcccccChhhHhhc---CceEEEcCCCCCC--C-HHHHH---HHHHCCCEEECc
Confidence 9987644 33344333332 66677775 43 2 34443 346678776544
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.53 Score=41.99 Aligned_cols=75 Identities=19% Similarity=0.130 Sum_probs=44.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CCCCC-cccCCHHHHhc---CCCCcE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FPPDA-KVYGSYEALLD---DKDIDA 76 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~~~~-~~~~~~~e~l~---~~~~D~ 76 (362)
+..||..||||. |......++..+..+++ ++|.+++..+...+.+. ..+.+ ....|..+.+. +...|+
T Consensus 95 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~-~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv 172 (304)
T 3bwc_A 95 KPERVLIIGGGD-GGVLREVLRHGTVEHCD-LVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV 172 (304)
T ss_dssp SCCEEEEEECTT-SHHHHHHHTCTTCCEEE-EEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred CCCeEEEEcCCC-CHHHHHHHhCCCCCEEE-EEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence 457999999997 43333333333345655 68999876665544330 01112 23577777763 457899
Q ss_pred EEEcCCC
Q 018020 77 VYLPLPT 83 (362)
Q Consensus 77 V~i~~~~ 83 (362)
|++-.+.
T Consensus 173 Ii~d~~~ 179 (304)
T 3bwc_A 173 VIIDTTD 179 (304)
T ss_dssp EEEECC-
T ss_pred EEECCCC
Confidence 9985543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.29 Score=42.13 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=54.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhc-CCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCc-ccCCHHHH-hcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITL-APNAVLSAVASRSLEKATNFAKAN----NFPPDAK-VYGSYEAL-LDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~-~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~-~~~~~~e~-l~~~~~D~V~i~ 80 (362)
..+|.-+|||. |......++. .|..+++ .+|.+++..+...+.+ |.+ .+. ...|+.+. +.+..+|+|+..
T Consensus 97 ~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~-~~D~~~~~~~~a~~~~~~~~g~~-~v~~~~~d~~~~~~~~~~~D~v~~~ 173 (258)
T 2pwy_A 97 GMRVLEAGTGS-GGLTLFLARAVGEKGLVE-SYEARPHHLAQAERNVRAFWQVE-NVRFHLGKLEEAELEEAAYDGVALD 173 (258)
T ss_dssp TCEEEEECCTT-SHHHHHHHHHHCTTSEEE-EEESCHHHHHHHHHHHHHHCCCC-CEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred CCEEEEECCCc-CHHHHHHHHHhCCCCEEE-EEeCCHHHHHHHHHHHHHhcCCC-CEEEEECchhhcCCCCCCcCEEEEC
Confidence 45899999997 6544444444 3466766 5788887666554432 421 122 24566666 555579999986
Q ss_pred CCCc-ccHHHHHHHHHcCCeEEE
Q 018020 81 LPTS-MHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 81 ~~~~-~h~~~~~~al~~gk~V~~ 102 (362)
.|.. .-...+.++|+.|-.+++
T Consensus 174 ~~~~~~~l~~~~~~L~~gG~l~~ 196 (258)
T 2pwy_A 174 LMEPWKVLEKAALALKPDRFLVA 196 (258)
T ss_dssp SSCGGGGHHHHHHHEEEEEEEEE
T ss_pred CcCHHHHHHHHHHhCCCCCEEEE
Confidence 5544 334444555555544444
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=93.57 E-value=0.055 Score=50.60 Aligned_cols=110 Identities=18% Similarity=0.147 Sum_probs=66.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCC--C---CCC---cccCCHHHHh
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNF--P---PDA---KVYGSYEALL 69 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~--~---~~~---~~~~~~~e~l 69 (362)
..+|+|.|+|.+|...+..+.+. +.+||++.|. +.+.+.++.++.+. - ++. ..+.+.++++
T Consensus 210 gk~vaVqG~GnVG~~aa~~L~e~-GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~ 288 (421)
T 1v9l_A 210 GKTVAIQGMGNVGRWTAYWLEKM-GAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIF 288 (421)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhh
Confidence 47899999999999888888776 8999999998 56666655443321 0 000 1232446777
Q ss_pred cCCCCcEEEEcC-CCcccHHHHHHHHHcCCeEEEeC---CCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 70 DDKDIDAVYLPL-PTSMHVKWAISVAQKKKHLLMEK---PMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 70 ~~~~~D~V~i~~-~~~~h~~~~~~al~~gk~V~~EK---P~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.. ++|+.+-|. ++..+.+-+... +..+++|= |+ + .++.+ ..+++|+.+.
T Consensus 289 ~~-~~Dil~P~A~~~~I~~~~a~~l---~ak~V~EgAN~p~--t-~~a~~---~l~~~Gi~~~ 341 (421)
T 1v9l_A 289 KL-DVDIFVPAAIENVIRGDNAGLV---KARLVVEGANGPT--T-PEAER---ILYERGVVVV 341 (421)
T ss_dssp GC-CCSEEEECSCSSCBCTTTTTTC---CCSEEECCSSSCB--C-HHHHH---HHHTTTCEEE
T ss_pred cC-CccEEEecCcCCccchhhHHHc---CceEEEecCCCcC--C-HHHHH---HHHHCCCEEe
Confidence 74 799998754 444443333222 55677774 42 2 33333 3455566554
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.34 Score=43.93 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=57.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~---~~~~D~V~i~~ 81 (362)
-+|.|+|+ |.+|...+..++.. +++++ ++++++++.+.+.+++|... +.-+ +++.+.+. ...+|+|+.++
T Consensus 157 ~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~-~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (345)
T 2j3h_A 157 ETVYVSAASGAVGQLVGQLAKMM-GCYVV-GSAGSKEKVDLLKTKFGFDD-AFNYKEESDLTAALKRCFPNGIDIYFENV 233 (345)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT-TCEEE-EEESSHHHHHHHHHTSCCSE-EEETTSCSCSHHHHHHHCTTCEEEEEESS
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHHHHHcCCce-EEecCCHHHHHHHHHHHhCCCCcEEEECC
Confidence 47899997 99999988888877 67766 46688887776655677421 0011 23444332 23699999988
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
.. ...+.+..+++.| +-|++
T Consensus 234 g~-~~~~~~~~~l~~~G~~v~~ 254 (345)
T 2j3h_A 234 GG-KMLDAVLVNMNMHGRIAVC 254 (345)
T ss_dssp CH-HHHHHHHTTEEEEEEEEEC
T ss_pred CH-HHHHHHHHHHhcCCEEEEE
Confidence 76 3455555566555 43443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.09 Score=46.64 Aligned_cols=72 Identities=11% Similarity=0.090 Sum_probs=49.8
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCC---HHHHhcCCCCcEEEE
Q 018020 8 AIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGS---YEALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~---~~e~l~~~~~D~V~i 79 (362)
..++.|+| +|.+|...+..+.+. +.+ +.+++|+.++++++++++ ++..-..-.++ ++++++ ++|+|+.
T Consensus 119 gk~vlVtGaaGGiG~aia~~L~~~-G~~-V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~DvlVn 194 (287)
T 1lu9_A 119 GKKAVVLAGTGPVGMRSAALLAGE-GAE-VVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK--GAHFVFT 194 (287)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHT-TCE-EEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT--TCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC-cCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHH--hCCEEEE
Confidence 35789999 899999999998877 677 558899998888776654 22100001223 345555 4899999
Q ss_pred cCCC
Q 018020 80 PLPT 83 (362)
Q Consensus 80 ~~~~ 83 (362)
+++.
T Consensus 195 ~ag~ 198 (287)
T 1lu9_A 195 AGAI 198 (287)
T ss_dssp CCCT
T ss_pred CCCc
Confidence 9975
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.32 Score=42.96 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=43.2
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHH--HHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKA--TNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~--~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+++|.|+|+ |.+|...++.|.+.++.+|+++ +|++++. +.+.. .++. -+..-.++++++++ ++|+|+.+.
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~-~R~~~~~~~~~l~~-~~~~~~~~D~~d~~~l~~~~~--~~d~vi~~a 80 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVV-TRNPRKKAAKELRL-QGAEVVQGDQDDQVIMELALN--GAYATFIVT 80 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEE-ESCTTSHHHHHHHH-TTCEEEECCTTCHHHHHHHHT--TCSEEEECC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEE-EcCCCCHHHHHHHH-CCCEEEEecCCCHHHHHHHHh--cCCEEEEeC
Confidence 468999997 9999999998877644787765 4554432 22222 2321 00011123444555 499999877
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
.
T Consensus 81 ~ 81 (299)
T 2wm3_A 81 N 81 (299)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.16 Score=46.05 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=54.3
Q ss_pred eEEEEEecc-HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHH----hcCCCCcEEEE
Q 018020 9 IRFGIIGAA-DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEAL----LDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G-~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~----l~~~~~D~V~i 79 (362)
-+|.|+|+| .+|...+..++.. +++++++ ++++++.+. ++++|.. .++ .++.+. .....+|+|+.
T Consensus 146 ~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~-~~~~~~~~~-~~~lga~---~~~~~~~~~~~~~~~~~~~~~g~Dvvid 219 (340)
T 3gms_A 146 DVLLVNACGSAIGHLFAQLSQIL-NFRLIAV-TRNNKHTEE-LLRLGAA---YVIDTSTAPLYETVMELTNGIGADAAID 219 (340)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHH-TCEEEEE-ESSSTTHHH-HHHHTCS---EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CEEEEeCCccHHHHHHHHHHHHc-CCEEEEE-eCCHHHHHH-HHhCCCc---EEEeCCcccHHHHHHHHhCCCCCcEEEE
Confidence 478999997 7898888877766 6787755 556565554 3456642 111 233332 22347999999
Q ss_pred cCCCcccHHHHHHHHHcC-CeEEEe
Q 018020 80 PLPTSMHVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~g-k~V~~E 103 (362)
++....-...+ .+++.| +-|++-
T Consensus 220 ~~g~~~~~~~~-~~l~~~G~iv~~G 243 (340)
T 3gms_A 220 SIGGPDGNELA-FSLRPNGHFLTIG 243 (340)
T ss_dssp SSCHHHHHHHH-HTEEEEEEEEECC
T ss_pred CCCChhHHHHH-HHhcCCCEEEEEe
Confidence 88876544444 566555 445543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.33 Score=43.67 Aligned_cols=89 Identities=16% Similarity=-0.009 Sum_probs=57.0
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHH----hcCCCCcEEEEcC
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEAL----LDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~----l~~~~~D~V~i~~ 81 (362)
-+|.|+| +|.+|...+..++.. +++++++ ++++++.+.+ +++|... +.-+ .++.+. .....+|+|+.++
T Consensus 142 ~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~-~~~~~~~~~~-~~~Ga~~-~~~~~~~~~~~~~~~~~~~~g~Dvvid~~ 217 (325)
T 3jyn_A 142 EIILFHAAAGGVGSLACQWAKAL-GAKLIGT-VSSPEKAAHA-KALGAWE-TIDYSHEDVAKRVLELTDGKKCPVVYDGV 217 (325)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHH-TCEEEEE-ESSHHHHHHH-HHHTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC-CCEEEEE-eCCHHHHHHH-HHcCCCE-EEeCCCccHHHHHHHHhCCCCceEEEECC
Confidence 4789999 799999888888766 6787754 5677776644 5666420 0011 223222 2234799999998
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
.. ...+.+..+++.| +-|++
T Consensus 218 g~-~~~~~~~~~l~~~G~iv~~ 238 (325)
T 3jyn_A 218 GQ-DTWLTSLDSVAPRGLVVSF 238 (325)
T ss_dssp CG-GGHHHHHTTEEEEEEEEEC
T ss_pred Ch-HHHHHHHHHhcCCCEEEEE
Confidence 87 5566667777665 44444
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.23 E-value=0.19 Score=44.55 Aligned_cols=86 Identities=16% Similarity=0.095 Sum_probs=48.7
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH-------HHHHHHHH--HcCCC---CCCcccCCHHHHhcCCCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL-------EKATNFAK--ANNFP---PDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~-------~~~~~~~~--~~~~~---~~~~~~~~~~e~l~~~~~ 74 (362)
+++|.|+|+ |.+|...+..|.+. +.+|++ .+|++ ++++.+.. ..++. -+..-.+++.++++ ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~-~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~--~~ 77 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKA-GNPTYA-LVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIK--QV 77 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHH-TCCEEE-EECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TC
T ss_pred CcEEEEECCCchHHHHHHHHHHhC-CCcEEE-EECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHh--CC
Confidence 357999996 99999999988776 467665 45654 44443321 22321 00011123444555 59
Q ss_pred cEEEEcCCCc---ccHHHHHHHHHcC
Q 018020 75 DAVYLPLPTS---MHVKWAISVAQKK 97 (362)
Q Consensus 75 D~V~i~~~~~---~h~~~~~~al~~g 97 (362)
|+|+.+.... ....++..|.++|
T Consensus 78 d~vi~~a~~~~~~~~~~l~~aa~~~g 103 (307)
T 2gas_A 78 DIVICAAGRLLIEDQVKIIKAIKEAG 103 (307)
T ss_dssp SEEEECSSSSCGGGHHHHHHHHHHHC
T ss_pred CEEEECCcccccccHHHHHHHHHhcC
Confidence 9999877643 2333444444444
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.18 E-value=0.24 Score=46.07 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=56.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCcccC--C--HHHHh---cCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYG--S--YEALL---DDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~--~~e~l---~~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...++.++.. ++ +|+ +.++++++.+ +++++|.. +..+. + .+++. ....+|+|+.+
T Consensus 187 ~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi-~~~~~~~~~~-~a~~lGa~--~i~~~~~~~~~~~~~~~~~g~g~Dvvid~ 261 (398)
T 2dph_A 187 SHVYIAGAGPVGRCAAAGARLL-GAACVI-VGDQNPERLK-LLSDAGFE--TIDLRNSAPLRDQIDQILGKPEVDCGVDA 261 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCSEEE-EEESCHHHHH-HHHTTTCE--EEETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCEEE-EEcCCHHHHH-HHHHcCCc--EEcCCCcchHHHHHHHHhCCCCCCEEEEC
Confidence 4799999999999888887766 56 666 4567777665 45677742 11122 2 22232 22369999999
Q ss_pred CCCcc--------------cHHHHHHHHHcCCeE
Q 018020 81 LPTSM--------------HVKWAISVAQKKKHL 100 (362)
Q Consensus 81 ~~~~~--------------h~~~~~~al~~gk~V 100 (362)
+.... ..+.+.++++.|-.+
T Consensus 262 ~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~i 295 (398)
T 2dph_A 262 VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAI 295 (398)
T ss_dssp SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEE
T ss_pred CCCccccccccccccccHHHHHHHHHHHhcCCEE
Confidence 88653 356666777666443
|
| >3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.16 E-value=0.18 Score=45.38 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=51.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-CH----------HHHHHHHHHcCCCCCCcccCC-----HHHHhcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-SL----------EKATNFAKANNFPPDAKVYGS-----YEALLDD 71 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-~~----------~~~~~~~~~~~~~~~~~~~~~-----~~e~l~~ 71 (362)
+|||.++|+...+...+..|.+. +.+|++|+.. +. ...+.+|.++|+| +.-..+ +.+.|..
T Consensus 2 ~mrivf~Gtp~fa~~~L~~L~~~-~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIp--v~~~~~~~~~~~~~~l~~ 78 (314)
T 3tqq_A 2 SLKIVFAGTPQFAVPTLRALIDS-SHRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIP--IIQPFSLRDEVEQEKLIA 78 (314)
T ss_dssp CCEEEEEECSGGGHHHHHHHHHS-SSEEEEEECCCC----------CCHHHHHHHHTTCC--EECCSCSSSHHHHHHHHT
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCC--EECcccCCCHHHHHHHHh
Confidence 58999999999999888888765 6899999862 22 1245789999997 111122 2345667
Q ss_pred CCCcEEEEcCC
Q 018020 72 KDIDAVYLPLP 82 (362)
Q Consensus 72 ~~~D~V~i~~~ 82 (362)
.++|+++++.-
T Consensus 79 ~~~Dliv~~~~ 89 (314)
T 3tqq_A 79 MNADVMVVVAY 89 (314)
T ss_dssp TCCSEEEEESC
T ss_pred cCCCEEEEcCc
Confidence 78999998743
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.12 Score=47.58 Aligned_cols=87 Identities=10% Similarity=0.085 Sum_probs=55.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH---HHHHHHHHHcCCCCCCcccC--CH-HHHhc-CCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL---EKATNFAKANNFPPDAKVYG--SY-EALLD-DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~---~~~~~~~~~~~~~~~~~~~~--~~-~e~l~-~~~~D~V~i~~ 81 (362)
-+|.|+|+|.+|...++.++.. +++++++ ++++ ++. ++++++|.. ..+ ++ +++.+ ...+|+|+.++
T Consensus 182 ~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~-~~~~~~ga~----~v~~~~~~~~~~~~~~~~d~vid~~ 254 (366)
T 2cdc_A 182 RKVLVVGTGPIGVLFTLLFRTY-GLEVWMA-NRREPTEVEQ-TVIEETKTN----YYNSSNGYDKLKDSVGKFDVIIDAT 254 (366)
T ss_dssp CEEEEESCHHHHHHHHHHHHHH-TCEEEEE-ESSCCCHHHH-HHHHHHTCE----EEECTTCSHHHHHHHCCEEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEEEE-eCCccchHHH-HHHHHhCCc----eechHHHHHHHHHhCCCCCEEEECC
Confidence 4799999999999888888766 6777754 5555 555 445667742 111 11 22221 14699999999
Q ss_pred CCcccH-HHHHHHHHcC-CeEEE
Q 018020 82 PTSMHV-KWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~-~~~~~al~~g-k~V~~ 102 (362)
...... +.+..+++.| +-|++
T Consensus 255 g~~~~~~~~~~~~l~~~G~iv~~ 277 (366)
T 2cdc_A 255 GADVNILGNVIPLLGRNGVLGLF 277 (366)
T ss_dssp CCCTHHHHHHGGGEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHhcCCEEEEE
Confidence 876555 5666666554 43444
|
| >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0 | Back alignment and structure |
|---|
Probab=92.98 E-value=0.15 Score=43.21 Aligned_cols=90 Identities=19% Similarity=0.234 Sum_probs=51.8
Q ss_pred ceeEEEEEec--cHHHHHHHHHHhcCC-CcEEEEEEcCCH-HHHHHHHHHcCCCCC---CcccC--CHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGA--ADIARKLSRAITLAP-NAVLSAVASRSL-EKATNFAKANNFPPD---AKVYG--SYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~--G~~g~~~~~~~~~~~-~~~vv~v~d~~~-~~~~~~~~~~~~~~~---~~~~~--~~~e~l~~~~~D~V 77 (362)
.++||+|+-. |+-....+..++.-. .++|++|+...+ ....+.|+++|+|-- .+-+. .+.+.|+..++|++
T Consensus 7 ~~~ri~vl~SG~gsnl~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~gIp~~~~~~~~~~~~~~~~~L~~~~~Dli 86 (215)
T 3kcq_A 7 KELRVGVLISGRGSNLEALAKAFSTEESSVVISCVISNNAEARGLLIAQSYGIPTFVVKRKPLDIEHISTVLREHDVDLV 86 (215)
T ss_dssp CCEEEEEEESSCCHHHHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHTTCCEEECCBTTBCHHHHHHHHHHTTCSEE
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHcCCCEEEeCcccCChHHHHHHHHHhCCCEE
Confidence 3566666554 444445555554321 379999887433 335567899999710 00111 23345666789999
Q ss_pred EEcCCCcccHHHHHHHHHc
Q 018020 78 YLPLPTSMHVKWAISVAQK 96 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~ 96 (362)
+++.-..--.+-+....+.
T Consensus 87 vlagy~~IL~~~~l~~~~~ 105 (215)
T 3kcq_A 87 CLAGFMSILPEKFVTDWHH 105 (215)
T ss_dssp EESSCCSCCCHHHHHHTTT
T ss_pred EEeCCceEeCHHHHhhccC
Confidence 9987665444444444443
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.97 E-value=0.55 Score=42.79 Aligned_cols=89 Identities=11% Similarity=0.090 Sum_probs=55.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC--CHH-HH---hcCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG--SYE-AL---LDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~-e~---l~~~~~D~V~i~~ 81 (362)
-+|.|+|+ |.+|...+..++.. +++++ ++++++++.+ .++++|... +.-+. ++. ++ .....+|+|+.++
T Consensus 172 ~~vlV~GasggiG~~~~~~a~~~-Ga~Vi-~~~~~~~~~~-~~~~~ga~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~~ 247 (351)
T 1yb5_A 172 ESVLVHGASGGVGLAACQIARAY-GLKIL-GTAGTEEGQK-IVLQNGAHE-VFNHREVNYIDKIKKYVGEKGIDIIIEML 247 (351)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT-TCEEE-EEESSHHHHH-HHHHTTCSE-EEETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred CEEEEECCCChHHHHHHHHHHHC-CCEEE-EEeCChhHHH-HHHHcCCCE-EEeCCCchHHHHHHHHcCCCCcEEEEECC
Confidence 47999998 99999988888876 67866 4567777776 456676420 00111 222 22 2233699999988
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
... ..+.+..+++.| +-|++
T Consensus 248 G~~-~~~~~~~~l~~~G~iv~~ 268 (351)
T 1yb5_A 248 ANV-NLSKDLSLLSHGGRVIVV 268 (351)
T ss_dssp HHH-HHHHHHHHEEEEEEEEEC
T ss_pred ChH-HHHHHHHhccCCCEEEEE
Confidence 753 344555666554 44444
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=92.89 E-value=0.16 Score=46.08 Aligned_cols=106 Identities=12% Similarity=0.077 Sum_probs=66.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~~ 82 (362)
+.+|.|+|+|..|...++.+.+. +. ++ ++|+++++.+ +. +.+.+ .++ ++.+.+.+ -.+.|+|+++++
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~-g~-v~-vid~~~~~~~-~~-~~~~~---~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGS-EV-FV-LAEDENVRKK-VL-RSGAN---FVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGS-CE-EE-EESCGGGHHH-HH-HTTCE---EEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhC-Cc-EE-EEeCChhhhh-HH-hCCcE---EEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 34799999999999999988776 45 44 7799999888 54 45543 222 33443322 257899999999
Q ss_pred CcccHHHHHHHHH-cC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAISVAQ-KK--KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~~al~-~g--k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++...-.+...++ .+ .+|++. +.+.+..+.+ ++.|....
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar---~~~~~~~~~l----~~~G~d~v 228 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAE---AERYENIEQL----RMAGADQV 228 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEE---CSSGGGHHHH----HHTTCSEE
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEE---ECCHHHHHHH----HHcCCCEE
Confidence 8755444444444 34 367664 3344444333 35665544
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.2 Score=45.65 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=51.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l---~~~~~D~V~i~~ 81 (362)
-+|.|+|+ |.+|...++.++......++++++ .++.+.+ + +|.. .++ .++.+-+ ....+|+|+-++
T Consensus 144 ~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~--~~~~~~~-~-~ga~---~~~~~~~~~~~~~~~~~~~g~Dvv~d~~ 216 (349)
T 4a27_A 144 MSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS--TFKHEAI-K-DSVT---HLFDRNADYVQEVKRISAEGVDIVLDCL 216 (349)
T ss_dssp CEEEESSTTSHHHHHHHHHHTTSTTCEEEEEEC--GGGHHHH-G-GGSS---EEEETTSCHHHHHHHHCTTCEEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCC--HHHHHHH-H-cCCc---EEEcCCccHHHHHHHhcCCCceEEEECC
Confidence 47999999 899998888888776688887763 3444433 3 5542 122 2333322 224799999988
Q ss_pred CCcccHHHHHHHHHcC-CeEEEe
Q 018020 82 PTSMHVKWAISVAQKK-KHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~E 103 (362)
....- +.+..+++.| +-|++-
T Consensus 217 g~~~~-~~~~~~l~~~G~~v~~G 238 (349)
T 4a27_A 217 CGDNT-GKGLSLLKPLGTYILYG 238 (349)
T ss_dssp C--------CTTEEEEEEEEEEC
T ss_pred CchhH-HHHHHHhhcCCEEEEEC
Confidence 76543 5555666655 555554
|
| >3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.77 E-value=1.2 Score=35.16 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=61.2
Q ss_pred ceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc------CC----HHHHhcCCCCc
Q 018020 7 AAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY------GS----YEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~------~~----~~e~l~~~~~D 75 (362)
+++||.||.-...-.. ....+...+++.++..++...+..+.+.+. . +++.+. .+ ++.+-+....-
T Consensus 24 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 24 RVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL-K--PDVITMDIEMPNLNGIEALKLIMKKAPTR 100 (164)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH-C--CSEEEECSSCSSSCHHHHHHHHHHHSCCE
T ss_pred CccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC-C--CCEEEEeCCCCCCCHHHHHHHHHhcCCce
Confidence 5789999998775444 444566666777777776555544444333 2 111111 11 22222222355
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCC
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKHLLMEKPMAL 108 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~ 108 (362)
+|++.+......+.+..++++|..=++.||+..
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~ 133 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGS 133 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSS
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCH
Confidence 666666666666778899999999899999864
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=92.71 E-value=0.33 Score=44.37 Aligned_cols=89 Identities=10% Similarity=-0.033 Sum_probs=55.0
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHHcCCCCCCcccC-------CHHH-Hh-----cCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKANNFPPDAKVYG-------SYEA-LL-----DDK 72 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~~-------~~~e-~l-----~~~ 72 (362)
-+|.|+|+ |.+|...++.++.. +++++++++.... +...+++++|.. .+++ ++.+ +. ...
T Consensus 169 ~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~t~~~~~ 244 (364)
T 1gu7_A 169 DWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIKQSGG 244 (364)
T ss_dssp CEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred cEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHHhhccCC
Confidence 47899998 99999888887766 7888888743322 233445677743 2221 2222 22 224
Q ss_pred CCcEEEEcCCCcccHHHHHHHHHcC-CeEEE
Q 018020 73 DIDAVYLPLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
.+|+|+-++....-. .+..+++.| +-|++
T Consensus 245 g~Dvvid~~G~~~~~-~~~~~l~~~G~~v~~ 274 (364)
T 1gu7_A 245 EAKLALNCVGGKSST-GIARKLNNNGLMLTY 274 (364)
T ss_dssp CEEEEEESSCHHHHH-HHHHTSCTTCEEEEC
T ss_pred CceEEEECCCchhHH-HHHHHhccCCEEEEe
Confidence 699999998865444 455666665 44444
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.70 E-value=0.58 Score=42.04 Aligned_cols=89 Identities=13% Similarity=0.066 Sum_probs=56.3
Q ss_pred eEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHH-HH---hcCCCCcEEEEcC
Q 018020 9 IRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYE-AL---LDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~-e~---l~~~~~D~V~i~~ 81 (362)
-+|.|+| +|.+|...+..++.. ++++++ +++++++.+.+. ++|... +.-+ .++. ++ .....+|+|+.++
T Consensus 142 ~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~-~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~D~vi~~~ 217 (327)
T 1qor_A 142 EQFLFHAAAGGVGLIACQWAKAL-GAKLIG-TVGTAQKAQSAL-KAGAWQ-VINYREEDLVERLKEITGGKKVRVVYDSV 217 (327)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHH-TCEEEE-EESSHHHHHHHH-HHTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CEEEEECCCCHHHHHHHHHHHHc-CCEEEE-EeCCHHHHHHHH-HcCCCE-EEECCCccHHHHHHHHhCCCCceEEEECC
Confidence 4789999 699999888888776 677664 567877766554 455320 0011 1222 22 2234699999998
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
. ....+.+..+++.| +-|++
T Consensus 218 g-~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 218 G-RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp C-GGGHHHHHHTEEEEEEEEEC
T ss_pred c-hHHHHHHHHHhcCCCEEEEE
Confidence 8 55666677777665 43444
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.26 Score=47.70 Aligned_cols=87 Identities=8% Similarity=0.001 Sum_probs=58.5
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCH--HHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSL--EKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~--~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
..||-+||.|..|.. .+..|++. +++|. ++|... ...+.+ ++.|++ ++ .+.+.+.. ++|+|+++.-
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~-G~~V~-~sD~~~~~~~~~~L-~~~gi~----~~~G~~~~~~~~--~~d~vV~Spg 89 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARAL-GHTVT-GSDANIYPPMSTQL-EQAGVT----IEEGYLIAHLQP--APDLVVVGNA 89 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEE-EEESCCCTTHHHHH-HHTTCE----EEESCCGGGGCS--CCSEEEECTT
T ss_pred CCEEEEEEecHhhHHHHHHHHHhC-CCEEE-EECCCCCcHHHHHH-HHCCCE----EECCCCHHHcCC--CCCEEEECCC
Confidence 468999999999885 56667766 78866 677642 233344 345653 33 33444433 4899998765
Q ss_pred CcccHHHHHHHHHcCCeEEEe
Q 018020 83 TSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~E 103 (362)
-+...+.+.+|.++|.+|+.|
T Consensus 90 i~~~~p~l~~a~~~gi~v~~~ 110 (524)
T 3hn7_A 90 MKRGMDVIEYMLDTGLRYTSG 110 (524)
T ss_dssp CCTTSHHHHHHHHHTCCEEEH
T ss_pred cCCCCHHHHHHHHCCCcEEEH
Confidence 555566678899999999976
|
| >3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp} | Back alignment and structure |
|---|
Probab=92.60 E-value=1.5 Score=33.08 Aligned_cols=110 Identities=7% Similarity=0.014 Sum_probs=61.8
Q ss_pred CceeEEEEEeccHHHHHH-HHHHhcCCCcEEEEEEcCCHHHHHHHHHH-cC-------CCCCCcccCCHHHHhcCCCCcE
Q 018020 6 QAAIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKA-NN-------FPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~-~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-~~-------~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+.++||.||.-...-... ...+... +++++..++...+..+.+.+. +. .+.+....+-++.+-+.+.+-+
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESL-GYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHC-CCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 357899999987754443 4445443 788886666555544444432 11 1000011111122222245666
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHH
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNAC 120 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a 120 (362)
|+++.... ......+++.|..-++.||+ +.++..+.++.+
T Consensus 86 i~ls~~~~--~~~~~~~~~~g~~~~l~kp~--~~~~l~~~i~~~ 125 (140)
T 3cg0_A 86 IFITSSQD--VETFQRAKRVNPFGYLAKPV--AADTLHRSIEMA 125 (140)
T ss_dssp EEEECCCC--HHHHHHHHTTCCSEEEEESC--CHHHHHHHHHHH
T ss_pred EEEecCCC--HHHHHHHHhcCCCEEEeCCC--CHHHHHHHHHHH
Confidence 66655443 56778899999888999996 556665555544
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.58 Score=42.62 Aligned_cols=119 Identities=8% Similarity=0.061 Sum_probs=60.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCC----CcccCCHHHHhcC--CCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPD----AKVYGSYEALLDD--KDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~~--~~~D~V~i~~ 81 (362)
..||.|||+|..|...+..|... ++.=+.++|.+.-....+.+++-.... .+ .....+.|.. +.+++..+..
T Consensus 36 ~~~VlivG~GGlG~~ia~~La~~-Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~K-a~~~~~~l~~lnp~v~v~~~~~ 113 (346)
T 1y8q_A 36 ASRVLLVGLKGLGAEIAKNLILA-GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNR-AEASLERAQNLNPMVDVKVDTE 113 (346)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBH-HHHHHHHHHHTCTTSEEEEECS
T ss_pred CCeEEEECCCHHHHHHHHHHHHc-CCCEEEEEECCCcchhhCCCCCccccccCcCCH-HHHHHHHHHhHCCCeEEEEEec
Confidence 56899999999999999998766 554455777643111111111100000 01 0111111221 2333333322
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecc
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWV 134 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r 134 (362)
.-... ....+ .+-.|++. ...+.+.-..|.+.|+++++++..+....
T Consensus 114 ~~~~~---~~~~~-~~~dvVv~--~~d~~~~r~~ln~~~~~~~ip~i~~~~~G 160 (346)
T 1y8q_A 114 DIEKK---PESFF-TQFDAVCL--TCCSRDVIVKVDQICHKNSIKFFTGDVFG 160 (346)
T ss_dssp CGGGC---CHHHH-TTCSEEEE--ESCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred ccCcc---hHHHh-cCCCEEEE--cCCCHHHHHHHHHHHHHcCCCEEEEeecc
Confidence 21110 11222 34455554 24567777788888999999888765443
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=92.53 E-value=3.3 Score=34.45 Aligned_cols=111 Identities=15% Similarity=0.151 Sum_probs=62.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH---HcCCCCCCc-ccCCHHHH---hcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK---ANNFPPDAK-VYGSYEAL---LDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~---~~~~~~~~~-~~~~~~e~---l~~~~~D~V~i~ 80 (362)
.-+|.=||||. |.......+..|+.+++| +|.+++..+...+ +.+++ ++. +..|+.++ +.+..+|.|++.
T Consensus 39 ~~~vLDiGcG~-G~~~~~la~~~p~~~v~g-iD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~~~~~~d~v~~~ 115 (213)
T 2fca_A 39 NPIHIEVGTGK-GQFISGMAKQNPDINYIG-IELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLN 115 (213)
T ss_dssp CCEEEEECCTT-SHHHHHHHHHCTTSEEEE-ECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred CceEEEEecCC-CHHHHHHHHHCCCCCEEE-EEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence 45688899997 655555555678888775 6888876554433 34442 122 23455443 555679999886
Q ss_pred CCCcc----c----------HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 81 LPTSM----H----------VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 81 ~~~~~----h----------~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
-|.+. | ...+.+.|+.|-.+++.- .+...+..+.+..++.|
T Consensus 116 ~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t---d~~~~~~~~~~~~~~~g 170 (213)
T 2fca_A 116 FSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT---DNRGLFEYSLKSFSEYG 170 (213)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE---SCHHHHHHHHHHHHHHT
T ss_pred CCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe---CCHHHHHHHHHHHHHCC
Confidence 55431 1 233344555555555432 23444444555555544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.11 Score=46.38 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=63.3
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
++||.|.| +|++|...+..|.+. +.+|+++. |++.... +. ++. -+.. .++++++++ ++|+|+.+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~-r~~~~~~-~~---~~~~~~~Dl~-~~~~~~~~~--~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKND-GNTPIILT-RSIGNKA-IN---DYEYRVSDYT-LEDLINQLN--DVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-SCCC---------CCEEEECCCC-HHHHHHHTT--TCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEe-CCCCccc-CC---ceEEEEcccc-HHHHHHhhc--CCCEEEEcccc
Confidence 36899999 599999999999877 67877554 5533332 22 221 1222 344556666 69999976554
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE--EEEeeeccc
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ--LMDGTMWVH 135 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~--~~v~~~~r~ 135 (362)
.... --++-+..++.....++++|++.++. +++....-|
T Consensus 73 ~~~~-------------~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vy 113 (311)
T 3m2p_A 73 RGSQ-------------GKISEFHDNEILTQNLYDACYENNISNIVYASTISAY 113 (311)
T ss_dssp CCSS-------------SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred CCCC-------------ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHh
Confidence 3221 01122344677788999999988764 344443333
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.66 Score=41.29 Aligned_cols=90 Identities=17% Similarity=0.147 Sum_probs=54.4
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH------HHHHHHHH--HcCCC---CCCcccCCHHHHhcCCCCc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL------EKATNFAK--ANNFP---PDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~------~~~~~~~~--~~~~~---~~~~~~~~~~e~l~~~~~D 75 (362)
+++|.|+|+ |.+|...++.|.+. +.+|+++ +|++ ++.+.+.. ..++. -+..-.+++.++++ ++|
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~-~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~--~~d 79 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSF-SHPTFIY-ARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLK--QVD 79 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEE-ECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHT--TCS
T ss_pred ccEEEEEcCCchhHHHHHHHHHhC-CCcEEEE-ECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHc--CCC
Confidence 467999996 99999999998876 5777754 4543 34433321 22321 00011123445565 499
Q ss_pred EEEEcCCC---cccHHHHHHHHHcC--CeEE
Q 018020 76 AVYLPLPT---SMHVKWAISVAQKK--KHLL 101 (362)
Q Consensus 76 ~V~i~~~~---~~h~~~~~~al~~g--k~V~ 101 (362)
+|+.+... .....++..|.++| ++++
T Consensus 80 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 80 IVISALPFPMISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp EEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred EEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence 99987764 34566667777777 4554
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.87 Score=41.24 Aligned_cols=74 Identities=20% Similarity=0.181 Sum_probs=48.1
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCC------CCCcccCCHHHHhcCCCCcEEE
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFP------PDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~------~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
+.++|.|.|+ |++|...++.|.+.++. +|+ ++++++.+...+.+++.-+ -++.-.++++++++ ++|+|+
T Consensus 20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~-~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~--~~D~Vi 96 (344)
T 2gn4_A 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKII-VYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALE--GVDICI 96 (344)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHCCCSEEE-EEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTT--TCSEEE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhhCCCCEEE-EEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHh--cCCEEE
Confidence 4578999995 89999999988776454 766 5678888777766654211 01111123344555 599999
Q ss_pred EcCCC
Q 018020 79 LPLPT 83 (362)
Q Consensus 79 i~~~~ 83 (362)
-+...
T Consensus 97 h~Aa~ 101 (344)
T 2gn4_A 97 HAAAL 101 (344)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 76643
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.42 Score=46.26 Aligned_cols=35 Identities=9% Similarity=0.127 Sum_probs=28.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
..||.|||+|..|...+..|... ++.=+.++|.+.
T Consensus 32 ~~~VlvvG~GGlGseiak~La~a-GVg~itlvD~D~ 66 (531)
T 1tt5_A 32 SAHVCLINATATGTEILKNLVLP-GIGSFTIIDGNQ 66 (531)
T ss_dssp HCEEEEECCSHHHHHHHHHHHTT-TCSEEEEECCCB
T ss_pred cCeEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 57999999999999999999866 665566888653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.39 E-value=0.42 Score=43.93 Aligned_cols=85 Identities=13% Similarity=0.077 Sum_probs=57.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc---CCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~---~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...++.++.. ++ +|+ +.++++++.+. ++++|... +.-+ +++.+.+. ...+|+|+.+
T Consensus 193 ~~VlV~GaG~vG~~a~qla~~~-Ga~~Vi-~~~~~~~~~~~-~~~lGa~~-vi~~~~~~~~~~~~~~~~~~~g~D~vid~ 268 (374)
T 2jhf_A 193 STCAVFGLGGVGLSVIMGCKAA-GAARII-GVDINKDKFAK-AKEVGATE-CVNPQDYKKPIQEVLTEMSNGGVDFSFEV 268 (374)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEE-EECSCGGGHHH-HHHTTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEE-EEcCCHHHHHH-HHHhCCce-EecccccchhHHHHHHHHhCCCCcEEEEC
Confidence 4799999999999888888877 66 665 45677776654 46777531 1111 23444332 1369999999
Q ss_pred CCCcccHHHHHHHHHcC
Q 018020 81 LPTSMHVKWAISVAQKK 97 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g 97 (362)
+......+.+.++++.|
T Consensus 269 ~g~~~~~~~~~~~l~~~ 285 (374)
T 2jhf_A 269 IGRLDTMVTALSCCQEA 285 (374)
T ss_dssp SCCHHHHHHHHHHBCTT
T ss_pred CCCHHHHHHHHHHhhcC
Confidence 98866777777888765
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.44 Score=43.30 Aligned_cols=134 Identities=8% Similarity=0.003 Sum_probs=74.2
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc--cCCHHHHhcC---CCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV--YGSYEALLDD---KDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~e~l~~---~~~D~V~i~~~ 82 (362)
-+|.|+|+ |.+|...+..++.. ++++++ +++++++.+ .++++|...-... ..++.+.+.. ..+|+|+.++.
T Consensus 171 ~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~-~~~~~~~~~-~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g 247 (347)
T 2hcy_A 171 HWVAISGAAGGLGSLAVQYAKAM-GYRVLG-IDGGEGKEE-LFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSV 247 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEE-EECSTTHHH-HHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCcEEE-EcCCHHHHH-HHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence 47999999 88999888888876 678775 556666664 4556664210001 1244444321 26999999988
Q ss_pred CcccHHHHHHHHHcC-CeEEEeCCC----CCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccc
Q 018020 83 TSMHVKWAISVAQKK-KHLLMEKPM----ALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQ 154 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~EKP~----~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~ 154 (362)
.....+.+..+++.| +-|++--+- ..+.. .+ . .+++.+. ++.......+.++-+++ ++|.+-.
T Consensus 248 ~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~---~~---~-~~~~~i~-g~~~~~~~~~~~~~~l~-~~g~l~~ 315 (347)
T 2hcy_A 248 SEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVF---NQ---V-VKSISIV-GSYVGNRADTREALDFF-ARGLVKS 315 (347)
T ss_dssp CHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHH---HH---H-HTTCEEE-ECCCCCHHHHHHHHHHH-HTTSCCC
T ss_pred cHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHH---HH---h-hCCcEEE-EccCCCHHHHHHHHHHH-HhCCCcc
Confidence 655555555566554 334432221 11221 11 1 2344443 32222224566777777 6676643
|
| >3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.042 Score=52.12 Aligned_cols=110 Identities=11% Similarity=0.086 Sum_probs=64.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~ 83 (362)
.+|||.|||.|......+..+.+.+++..+.++..++... ...+...+ -+.|.+.++ ...++|+|++....
T Consensus 20 ~~m~ilvlG~ggre~ala~~l~~s~~v~~v~~~pgn~g~~-~~~~~~~i-----~~~d~~~l~~~a~~~~id~vv~g~E~ 93 (442)
T 3lp8_A 20 GSMNVLVIGSGGREHSMLHHIRKSTLLNKLFIAPGREGMS-GLADIIDI-----DINSTIEVIQVCKKEKIELVVIGPET 93 (442)
T ss_dssp CCEEEEEEECSHHHHHHHHHHTTCTTEEEEEEEECCGGGT-TTSEECCC-----CTTCHHHHHHHHHHTTCCEEEECSHH
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCCEEEEECCChHHh-hccceeec-----CcCCHHHHHHHHHHhCCCEEEECCcH
Confidence 4689999999965556677777888877676666554322 11111221 245666654 44679999974222
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHH------HHHHHHHHcCCEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFD------VILNACEENGVQL 127 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~------~l~~~a~~~~~~~ 127 (362)
..-..++..+-+.|.+++. .+.+.++ .+.++++++|++.
T Consensus 94 ~l~~~~~~~l~~~Gi~~~G-----p~~~a~~~~~dK~~~k~~l~~~GIp~ 138 (442)
T 3lp8_A 94 PLMNGLSDALTEEGILVFG-----PSKAAARLESSKGFTKELCMRYGIPT 138 (442)
T ss_dssp HHHTTHHHHHHHTTCEEES-----CCHHHHHHHHCHHHHHHHHHHHTCCB
T ss_pred HHHHHHHHHHHhcCCcEec-----CCHHHHHHhhCHHHHHHHHHHCCCCC
Confidence 2222345555577888773 2333332 2345667788875
|
| >2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A* | Back alignment and structure |
|---|
Probab=92.30 E-value=0.071 Score=50.02 Aligned_cols=113 Identities=8% Similarity=-0.018 Sum_probs=60.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh---cCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL---DDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l---~~~~~D~V~i~~~~~~ 85 (362)
|||+|||.|......+..+.+..+++++.+.+.++. ...+++ . ++ .-+.|.+.++ ...++|+|+.......
T Consensus 1 m~ililG~g~r~~~~a~~~~~~~g~~~v~~~~~~~~-~~~~~~-~-~~---~~~~d~~~l~~~~~~~~~d~v~~~~E~~~ 74 (422)
T 2xcl_A 1 MNVLIIGKGGREHTLAWKAAQSSLVENVFAAPGNDG-MAASAQ-L-VN---IEESDHAGLVSFAKQNQVGLTIVGPEVPL 74 (422)
T ss_dssp CEEEEEECSHHHHHHHHHHTTCTTCSEEEEEECCGG-GTTTCE-E-CC---CCTTCHHHHHHHHHHTTEEEEEECSHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEeCCChh-hhhhcc-c-cc---cCcCCHHHHHHHHHHcCCCEEEECCcHHH
Confidence 579999999544444555555557887766654443 212222 1 22 1245666654 3457899987432211
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHH-HHHHHHHHcCCEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFD-VILNACEENGVQL 127 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~-~l~~~a~~~~~~~ 127 (362)
-..++..+-+.|.+++.-.|-+.....=+ .+.+.++++|++.
T Consensus 75 ~~~~~~~l~~~gi~~~g~~~~~~~~~~dK~~~k~~l~~~gip~ 117 (422)
T 2xcl_A 75 IEGLVDEFEKAGLHVFGPSKAAAIIEGSKQFAKDLMKKYDIPT 117 (422)
T ss_dssp HTTHHHHHHHTTCCEESCCTTTTHHHHCHHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHCCCCEECcCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 11333344467888874334333332222 3345677778764
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.4 Score=44.09 Aligned_cols=89 Identities=9% Similarity=0.100 Sum_probs=59.5
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhc---CCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLD---DKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~---~~~~D~V~i~~~ 82 (362)
-+|.|+|+ |.+|...+..++.. ++++++++ ++++.+ +++++|.. .+.-+ .++.+.+. ...+|+|+-++.
T Consensus 166 ~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~--~~~~~~-~~~~lGa~-~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g 240 (371)
T 3gqv_A 166 VYVLVYGGSTATATVTMQMLRLS-GYIPIATC--SPHNFD-LAKSRGAE-EVFDYRAPNLAQTIRTYTKNNLRYALDCIT 240 (371)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE--CGGGHH-HHHHTTCS-EEEETTSTTHHHHHHHHTTTCCCEEEESSC
T ss_pred cEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe--CHHHHH-HHHHcCCc-EEEECCCchHHHHHHHHccCCccEEEECCC
Confidence 57999999 88999888888766 78888886 445544 67888853 11111 23333221 235999999999
Q ss_pred CcccHHHHHHHH-Hc-CCeEEE
Q 018020 83 TSMHVKWAISVA-QK-KKHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al-~~-gk~V~~ 102 (362)
.....+.+..++ +. |+-|.+
T Consensus 241 ~~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 241 NVESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp SHHHHHHHHHHSCTTCEEEEES
T ss_pred chHHHHHHHHHhhcCCCEEEEE
Confidence 877778888888 44 444444
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.72 Score=41.51 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=56.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~---~~~~D~V~i~~ 81 (362)
-+|.|+|+ |.+|...+..++.. +++++ ++++++++.+.+ +++|... +.-+ .++.+.+. ...+|+|+.++
T Consensus 147 ~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~-~~~~~~~~~~~~-~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~~ 222 (333)
T 1v3u_A 147 ETVLVSAAAGAVGSVVGQIAKLK-GCKVV-GAAGSDEKIAYL-KQIGFDA-AFNYKTVNSLEEALKKASPDGYDCYFDNV 222 (333)
T ss_dssp CEEEEESTTBHHHHHHHHHHHHT-TCEEE-EEESSHHHHHHH-HHTTCSE-EEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CEEEEecCCCcHHHHHHHHHHHC-CCEEE-EEeCCHHHHHHH-HhcCCcE-EEecCCHHHHHHHHHHHhCCCCeEEEECC
Confidence 46899998 99999888888876 67766 466788877766 6676420 0011 34444332 13699999988
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
... ....+..+++.| +-|++
T Consensus 223 g~~-~~~~~~~~l~~~G~~v~~ 243 (333)
T 1v3u_A 223 GGE-FLNTVLSQMKDFGKIAIC 243 (333)
T ss_dssp CHH-HHHHHHTTEEEEEEEEEC
T ss_pred ChH-HHHHHHHHHhcCCEEEEE
Confidence 753 244444555554 44544
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=92.19 E-value=0.13 Score=45.18 Aligned_cols=89 Identities=13% Similarity=0.210 Sum_probs=53.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH-----HHHHHH----------------------HHcCC-CCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE-----KATNFA----------------------KANNF-PPD 58 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~-----~~~~~~----------------------~~~~~-~~~ 58 (362)
+..+|.|||+|..|...+..|.+. +++|+ |++++.. ..+.+. ...++ .
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~-Ga~Vt-Viap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~-- 87 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPT-GCKLT-LVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYE-- 87 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGG-TCEEE-EEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSE--
T ss_pred CCCEEEEECCcHHHHHHHHHHHhC-CCEEE-EEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeE--
Confidence 457899999999999999998877 57766 4444321 112221 00111 0
Q ss_pred CcccCCHH-HHhc----CCCCcEEEEcCCCc-ccHHHHHHHHHc---CCeE
Q 018020 59 AKVYGSYE-ALLD----DKDIDAVYLPLPTS-MHVKWAISVAQK---KKHL 100 (362)
Q Consensus 59 ~~~~~~~~-e~l~----~~~~D~V~i~~~~~-~h~~~~~~al~~---gk~V 100 (362)
....+++ +.|+ ..+.|+|+.+|+.. ....++..|-+. |+.|
T Consensus 88 -~i~~~~~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~V 137 (274)
T 1kyq_A 88 -YIRSDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLV 137 (274)
T ss_dssp -EECSSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEE
T ss_pred -EEcCCCCHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEE
Confidence 1111221 1222 12589999999987 667777777777 7766
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.4 Score=44.13 Aligned_cols=85 Identities=14% Similarity=0.023 Sum_probs=57.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc---CCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~---~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...++.++.. ++ +|+ +.++++++.+. ++++|... +.-+ +++.+.+. ...+|+|+.+
T Consensus 197 ~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi-~~~~~~~~~~~-a~~lGa~~-vi~~~~~~~~~~~~v~~~~~~g~Dvvid~ 272 (376)
T 1e3i_A 197 STCAVFGLGCVGLSAIIGCKIA-GASRII-AIDINGEKFPK-AKALGATD-CLNPRELDKPVQDVITELTAGGVDYSLDC 272 (376)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEE-EECSCGGGHHH-HHHTTCSE-EECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEE-EEcCCHHHHHH-HHHhCCcE-EEccccccchHHHHHHHHhCCCccEEEEC
Confidence 3799999999999888888877 66 666 46677776654 46777531 1111 23433322 1379999999
Q ss_pred CCCcccHHHHHHHHHcC
Q 018020 81 LPTSMHVKWAISVAQKK 97 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g 97 (362)
+......+.+.++++.|
T Consensus 273 ~G~~~~~~~~~~~l~~~ 289 (376)
T 1e3i_A 273 AGTAQTLKAAVDCTVLG 289 (376)
T ss_dssp SCCHHHHHHHHHTBCTT
T ss_pred CCCHHHHHHHHHHhhcC
Confidence 98766667777777765
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=92.13 E-value=3.7 Score=32.56 Aligned_cols=70 Identities=9% Similarity=0.032 Sum_probs=43.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCc-ccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDAK-VYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
..+|.=||||. |.......+ +..+++ .+|.+++..+...+. .+++ .+. ...|+.+.+.+..+|+|+...+
T Consensus 36 ~~~vLdiG~G~-G~~~~~l~~--~~~~v~-~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 36 DDVVVDVGCGS-GGMTVEIAK--RCKFVY-AIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAEDVLDKLEFNKAFIGGT 109 (183)
T ss_dssp TCEEEEESCCC-SHHHHHHHT--TSSEEE-EEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHHHGGGCCCSEEEECSC
T ss_pred CCEEEEeCCCC-CHHHHHHHh--cCCeEE-EEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccccccCCCCcEEEECCc
Confidence 45899999997 443333333 567777 578888765544333 3432 122 3467777666567999998766
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.18 Score=46.40 Aligned_cols=131 Identities=11% Similarity=0.092 Sum_probs=76.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHH-Hhc--CCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEA-LLD--DKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e-~l~--~~~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...++.++.. ++ +|+ +.++++++.+. ++++|.. .+.-+ .++.+ +.+ ...+|+|+.++.
T Consensus 192 ~~VlV~GaG~vG~~a~qlak~~-Ga~~Vi-~~~~~~~~~~~-a~~lGa~-~vi~~~~~~~~~~~~~~~~gg~D~vid~~g 267 (371)
T 1f8f_A 192 SSFVTWGAGAVGLSALLAAKVC-GASIII-AVDIVESRLEL-AKQLGAT-HVINSKTQDPVAAIKEITDGGVNFALESTG 267 (371)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH-TCSEEE-EEESCHHHHHH-HHHHTCS-EEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEE-EECCCHHHHHH-HHHcCCC-EEecCCccCHHHHHHHhcCCCCcEEEECCC
Confidence 3799999999999888887766 56 455 56677776654 4667742 01111 23333 222 126999999998
Q ss_pred CcccHHHHHHHHHcC-CeEEEeC-----CCCCCHHHHHHHHHHHHHcCCEEEEeeec-cc--ChhHHHHHHhhcCCCCc
Q 018020 83 TSMHVKWAISVAQKK-KHLLMEK-----PMALNVAEFDVILNACEENGVQLMDGTMW-VH--NPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~EK-----P~~~~~~~~~~l~~~a~~~~~~~~v~~~~-r~--~p~~~~~k~~i~~~g~i 152 (362)
.....+.+.++++.| +-|++-- |+..+... + . .+++.+. +... .+ ...+.++-+++ ++|.|
T Consensus 268 ~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~---~---~-~~~~~i~-g~~~~~~~~~~~~~~~~~l~-~~g~l 337 (371)
T 1f8f_A 268 SPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVND---L---L-LGGKTIL-GVVEGSGSPKKFIPELVRLY-QQGKF 337 (371)
T ss_dssp CHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHH---H---H-HTTCEEE-ECSGGGSCHHHHHHHHHHHH-HTTSC
T ss_pred CHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHH---H---H-hCCCEEE-EeCCCCCchHHHHHHHHHHH-HcCCC
Confidence 766667777777665 4444432 23334322 1 1 2345544 3222 11 23467777787 66765
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=1.5 Score=38.92 Aligned_cols=74 Identities=15% Similarity=0.147 Sum_probs=42.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-----CC-CCCCc-ccCCHHHHhc--CCCCcEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-----NF-PPDAK-VYGSYEALLD--DKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-----~~-~~~~~-~~~~~~e~l~--~~~~D~V 77 (362)
.+.||..||+|. |......++..+..+++ ++|.+++..+...+.+ +. .+.+. ...|..+.+. ....|+|
T Consensus 90 ~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~-~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 167 (296)
T 1inl_A 90 NPKKVLIIGGGD-GGTLREVLKHDSVEKAI-LCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 167 (296)
T ss_dssp SCCEEEEEECTT-CHHHHHHTTSTTCSEEE-EEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCEEEEEcCCc-CHHHHHHHhcCCCCEEE-EEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEE
Confidence 357899999997 43333333333456655 6899987666554433 11 11222 3567777653 2458999
Q ss_pred EEcCC
Q 018020 78 YLPLP 82 (362)
Q Consensus 78 ~i~~~ 82 (362)
++-.+
T Consensus 168 i~d~~ 172 (296)
T 1inl_A 168 IIDST 172 (296)
T ss_dssp EEEC-
T ss_pred EEcCC
Confidence 97544
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.44 Score=43.43 Aligned_cols=72 Identities=13% Similarity=0.223 Sum_probs=41.8
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHH--HHHHHHcCCCC-CCcccCC---HHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKA--TNFAKANNFPP-DAKVYGS---YEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~--~~~~~~~~~~~-~~~~~~~---~~e~l~~~~~D~V~i~ 80 (362)
+++|.|.|+ |++|...++.|.+. +.+|+++. |++++. +.+.+..++.. .....+| ++++++ ++|+|+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~-R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~--~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAV-GHHVRAQV-HSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFE--GAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEE-SCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHT--TCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEE-CCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHh--cCCEEEEc
Confidence 578999996 89999999988775 67777654 554332 33332112110 0010223 344455 48999976
Q ss_pred CCC
Q 018020 81 LPT 83 (362)
Q Consensus 81 ~~~ 83 (362)
+..
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=92.04 E-value=0.019 Score=53.94 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=54.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHh--cCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALL--DDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l--~~~~~D~V~i~~~~~~ 85 (362)
..++.|+|+|..|+..+..+++. +++++|++|.++.+... .-.|+ .++. .+++. ...+++.|+|+. ..
T Consensus 52 ~~~v~IiGAG~~G~~l~~~l~~~-g~~ivgfiDdd~~~~g~--~i~Gi----pV~~-~~~l~~~~~~~~~~viiai--~~ 121 (409)
T 2py6_A 52 ATRLVILGTKGFGAHLMNVRHER-PCEVIAAVDDFRYHSGE--LYYGL----PIIS-TDRFTELATHDRDLVALNT--CR 121 (409)
T ss_dssp GCEEEEECSSSTHHHHHSCSSSC-SSEEEEEECTTTTTSCC--EETTE----EEEC-HHHHHHHHHTCTTEEEEEC--CC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHC-CCEEEEEEeCCcccccC--EECCE----EEEC-HHHHHHHHhCCCCEEEEec--cH
Confidence 45799999999999998877664 69999999986542111 11233 3554 34443 345688888888 45
Q ss_pred cHHHHHHHHHcC
Q 018020 86 HVKWAISVAQKK 97 (362)
Q Consensus 86 h~~~~~~al~~g 97 (362)
..+++..+.+.|
T Consensus 122 r~~i~~~l~~~g 133 (409)
T 2py6_A 122 YDGPKRFFDQIC 133 (409)
T ss_dssp SHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 677777777666
|
| >3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} | Back alignment and structure |
|---|
Probab=91.98 E-value=2.8 Score=32.27 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=63.6
Q ss_pred ceeEEEEEeccHHHHHHH-HHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc------CCHHHHh----c-CCCC
Q 018020 7 AAIRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY------GSYEALL----D-DKDI 74 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~-~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~------~~~~e~l----~-~~~~ 74 (362)
+++||.||.-...-...+ ..+....++++++.+....+..+.+ ++.. ++..+. .+--+++ + .+.+
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l-~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~ 80 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLY-RETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAA 80 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHH-HTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH-hcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 478999999887655444 4455446888886665544444333 3322 121111 1222222 2 2456
Q ss_pred cEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
-+|+++.... .+....++++|..-++.||+.. ++..+.++.+-+.
T Consensus 81 ~ii~ls~~~~--~~~~~~~~~~g~~~~l~kp~~~--~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 81 RILIFTMHQG--SAFALKAFEAGASGYVTKSSDP--AELVQAIEAILAG 125 (153)
T ss_dssp CEEEEESCCS--HHHHHHHHHTTCSEEEETTSCT--THHHHHHHHHTTT
T ss_pred eEEEEECCCC--HHHHHHHHHCCCcEEEecCCCH--HHHHHHHHHHHhC
Confidence 6666655443 5677889999999899999744 4555555544443
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.42 Score=45.78 Aligned_cols=86 Identities=8% Similarity=0.081 Sum_probs=55.1
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~~ 83 (362)
..||.+||.|..|.. .+..|.+. +.+|. ++|..... .+.+ ++.|++ ++ .+.+ .++ +.|+|++...-
T Consensus 19 ~~~v~viGiG~sG~s~~A~~l~~~-G~~V~-~~D~~~~~~~~~l-~~~gi~----~~~g~~~~-~~~--~a~~vv~s~~i 88 (491)
T 2f00_A 19 VRHIHFVGIGGAGMGGIAEVLANE-GYQIS-GSDLAPNPVTQQL-MNLGAT----IYFNHRPE-NVR--DASVVVVSSAI 88 (491)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT-TCEEE-EECSSCCHHHHHH-HHTTCE----EESSCCGG-GGT--TCSEEEECTTC
T ss_pred CCEEEEEEcCHHHHHHHHHHHHhC-CCeEE-EECCCCCHHHHHH-HHCCCE----EECCCCHH-HcC--CCCEEEECCCC
Confidence 468999999999886 77888776 78766 56654332 2333 445653 33 2333 343 58999887543
Q ss_pred cccHHHHHHHHHcCCeEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~E 103 (362)
....+.+.+|.+.|.+|+.+
T Consensus 89 ~~~~p~~~~a~~~~ipvl~~ 108 (491)
T 2f00_A 89 SADNPEIVAAHEARIPVIRR 108 (491)
T ss_dssp CTTCHHHHHHHHTTCCEEEH
T ss_pred CCCCHHHHHHHHcCCcEEEH
Confidence 33345566777888888754
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.26 Score=44.41 Aligned_cols=118 Identities=11% Similarity=0.027 Sum_probs=64.3
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHH----HHHHHHHcC--CC---CCCcccCCHHHHhcCCCCcE
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEK----ATNFAKANN--FP---PDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~----~~~~~~~~~--~~---~~~~~~~~~~e~l~~~~~D~ 76 (362)
++++|.|.|+ |++|...+..|.+. +.+|++ ++++.+. .+.+....+ +. -+..-.++++++++..++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAH-GYDVVI-ADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITA 81 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHT-TCEEEE-ECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHC-CCcEEE-EecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcE
Confidence 3578999995 89999999999877 688775 4554322 223322222 10 11111234455666456999
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC--EEEEeeeccc
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV--QLMDGTMWVH 135 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~--~~~v~~~~r~ 135 (362)
|+.+.............. .-+..++.....+++.+++.+. .+++....-|
T Consensus 82 vih~A~~~~~~~~~~~~~---------~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~ 133 (341)
T 3enk_A 82 AIHFAALKAVGESVAKPI---------EYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVY 133 (341)
T ss_dssp EEECCCCCCHHHHHHCHH---------HHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGB
T ss_pred EEECccccccCccccChH---------HHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEe
Confidence 997654322111100000 0012256667788888888764 4555554333
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.35 Score=44.45 Aligned_cols=90 Identities=8% Similarity=-0.058 Sum_probs=58.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc---CCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~---~~~~D~V~i~ 80 (362)
-+|.|+|+|.+|...++.++.. ++ +|+ +.++++++.+. ++++|... +.-+ .++.+.+. ...+|+|+.+
T Consensus 193 ~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi-~~~~~~~~~~~-a~~lGa~~-vi~~~~~~~~~~~~i~~~t~gg~Dvvid~ 268 (373)
T 1p0f_A 193 STCAVFGLGGVGFSAIVGCKAA-GASRII-GVGTHKDKFPK-AIELGATE-CLNPKDYDKPIYEVICEKTNGGVDYAVEC 268 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCSEEE-EECSCGGGHHH-HHHTTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCCeEE-EECCCHHHHHH-HHHcCCcE-EEecccccchHHHHHHHHhCCCCCEEEEC
Confidence 4799999999999888888766 56 665 46677766654 56787531 1112 23433332 1379999999
Q ss_pred CCCcccHHHHHHHHHcC--CeEEE
Q 018020 81 LPTSMHVKWAISVAQKK--KHLLM 102 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g--k~V~~ 102 (362)
+......+.+.++++.| +-|++
T Consensus 269 ~g~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 269 AGRIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SCCHHHHHHHHHTBCTTTCEEEEC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEE
Confidence 98766677777777765 44444
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=0.63 Score=45.37 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=67.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~~ 82 (362)
+.+|.|+|+|..|...+..|.+. +.+++ ++|.++++.+.+.++++++ .++ .+.+.+.+ -.+.|+|++ |+
T Consensus 127 ~~hviI~G~g~~g~~la~~L~~~-~~~vv-vid~~~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~a~i~~a~~vi~-t~ 200 (565)
T 4gx0_A 127 RGHILIFGIDPITRTLIRKLESR-NHLFV-VVTDNYDQALHLEEQEGFK---VVYGSPTDAHVLAGLRVAAARSIIA-NL 200 (565)
T ss_dssp CSCEEEESCCHHHHHHHHHTTTT-TCCEE-EEESCHHHHHHHHHSCSSE---EEESCTTCHHHHHHTTGGGCSEEEE-CS
T ss_pred CCeEEEECCChHHHHHHHHHHHC-CCCEE-EEECCHHHHHHHHHhcCCe---EEEeCCCCHHHHHhcCcccCCEEEE-eC
Confidence 56899999999999999999765 56655 6789999988887765653 222 23333322 246899988 66
Q ss_pred CcccHHHHHHHHHc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAISVAQK--KKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~~al~~--gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
++...-.+...++. ..+|++. +.+.+..+.+ ++.|....
T Consensus 201 ~D~~n~~~~~~ar~~~~~~iiar---~~~~~~~~~l----~~~Gad~v 241 (565)
T 4gx0_A 201 SDPDNANLCLTVRSLCQTPIIAV---VKEPVHGELL----RLAGANQV 241 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEE---CSSGGGHHHH----HHHTCSEE
T ss_pred CcHHHHHHHHHHHHhcCceEEEE---ECCHHHHHHH----HHcCCCEE
Confidence 65443333333332 4567664 3444444443 34555433
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=91.81 E-value=0.72 Score=43.38 Aligned_cols=117 Identities=9% Similarity=0.085 Sum_probs=72.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-----------CHH---HHHHHHHHc-C-CC---C--CCcccCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR-----------SLE---KATNFAKAN-N-FP---P--DAKVYGSY 65 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-----------~~~---~~~~~~~~~-~-~~---~--~~~~~~~~ 65 (362)
+..+|+|.|+|.+|...+..|.+. +.+||+|+|. +++ .+..+.++. + +. . +.+.. +.
T Consensus 229 ~g~~v~VqG~GnVG~~~a~~L~~~-GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i-~~ 306 (449)
T 1bgv_A 229 VGKTVALAGFGNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PG 306 (449)
T ss_dssp TTCEEEECCSSHHHHHHHHHHHHH-TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ET
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe-Cc
Confidence 347899999999999888877766 8999999983 443 333333332 1 10 0 01111 22
Q ss_pred HHHhcCCCCcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCEEEE
Q 018020 66 EALLDDKDIDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN-GVQLMD 129 (362)
Q Consensus 66 ~e~l~~~~~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~-~~~~~v 129 (362)
++++. .++|+.+=| +++..+.+-+.....+|..+++|--=.....++. +...++ |+.+..
T Consensus 307 ~e~~~-~~~Dil~P~A~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~---~~l~~~~Gi~~~P 368 (449)
T 1bgv_A 307 EKPWG-QKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL---RFLMQQPNMVVAP 368 (449)
T ss_dssp CCGGG-SCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH---HHHHHCTTCEEEC
T ss_pred hhhhc-CCcceeeccccccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH---HHHHHcCCEEEEC
Confidence 34564 478988854 5666777777777777888888862111223333 444556 776653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 362 | ||||
| d1ydwa2 | 171 | d.81.1.5 (A:134-304) Probable oxidoreductase At4g0 | 2e-37 | |
| d1ydwa1 | 184 | c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductas | 9e-17 | |
| d1lc0a1 | 172 | c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase { | 5e-15 | |
| d1xeaa1 | 167 | c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductas | 4e-14 | |
| d2nvwa1 | 237 | c.2.1.3 (A:2-154,A:374-457) Galactose/lactose meta | 4e-14 | |
| d1h6da1 | 221 | c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxid | 2e-13 | |
| d1zh8a1 | 181 | c.2.1.3 (A:4-131,A:276-328) Hypothetical protein T | 1e-11 | |
| d1zh8a2 | 144 | d.81.1.5 (A:132-275) Hypothetical protein TM0312 { | 5e-11 | |
| d1tlta1 | 164 | c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM | 2e-10 | |
| d1f06a1 | 170 | c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid de | 5e-10 | |
| d1h6da2 | 162 | d.81.1.5 (A:213-374) Glucose-fructose oxidoreducta | 1e-09 | |
| d1nvmb1 | 157 | c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge | 3e-05 |
| >d1ydwa2 d.81.1.5 (A:134-304) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 130 bits (327), Expect = 2e-37
Identities = 122/171 (71%), Positives = 145/171 (84%)
Query: 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGI 195
NPRTA +KEF+SD +RFGQL+T+ SCFSFAGD +FLKNDIRVKP LDGLGALGDAGWY I
Sbjct: 1 NPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLDGLGALGDAGWYAI 60
Query: 196 RSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLANMTMDITA 255
R+ L AN++ELPKTV A G VLNEAGVILSCGASL W+DGR AT CSFLAN+TM+ITA
Sbjct: 61 RATLLANNFELPKTVTAFPGAVLNEAGVILSCGASLSWEDGRTATIYCSFLANLTMEITA 120
Query: 256 TGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDI 306
GT G+L++HDFIIP++E EAS+ T+T+ +FNDLVT WV PSEH V T++
Sbjct: 121 IGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVSPPSEHTVKTEL 171
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 75.4 bits (184), Expect = 9e-17
Identities = 90/152 (59%), Positives = 119/152 (78%), Gaps = 3/152 (1%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IR G++G ADIARK+SRAI LAPNA +S VASRSLEKA FA ANN+P K++GSYE+L
Sbjct: 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESL 61
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
L+D +IDA+Y+PLPTS+HV+WAI A+K KH+L+EKP+A+NV EFD I++ACE NGVQ+M
Sbjct: 62 LEDPEIDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM 121
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHS 160
DGTMWVH ++EF + G+++ +
Sbjct: 122 DGTMWVHPQEACMVREFA---RLVGEIKNNGA 150
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 69.9 bits (170), Expect = 5e-15
Identities = 27/168 (16%), Positives = 52/168 (30%), Gaps = 17/168 (10%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
++G R + +A + + D S E
Sbjct: 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSL-------DEVRQISLEDA 60
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128
L ++ID Y+ +S H + Q KH+L+E PM L+ A + + G L
Sbjct: 61 LRSQEIDVAYICSESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLH 120
Query: 129 DGTMWVHNPRTAQMKEFVSDPQRFGQLRT---------MHSCFSFAGD 167
+ + + + ++ + Q+ + C A D
Sbjct: 121 EEHVELLKNIFLKDQDIFVQ-KLLDQVSAEDLAAEKKRIMHCLGLASD 167
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Score = 67.5 bits (164), Expect = 4e-14
Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 11/160 (6%)
Query: 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
+++ +IG DIA+K + P+ L + +R+ + A Y
Sbjct: 1 SLKIAMIGLGDIAQKAYLPVLAQWPDIEL-VLCTRNPKVLGTLATRYRVSATCTDYRDV- 58
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
+DAV + T +H A ++KP+A + E + + E++
Sbjct: 59 ---LQYGVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP 115
Query: 127 LMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAG 166
L G N A +++++ G+L T + A
Sbjct: 116 LYVG----FNGFDAMVQDWLQV-AAAGKLPTHIIERNLAS 150
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Score = 68.9 bits (167), Expect = 4e-14
Identities = 31/204 (15%), Positives = 67/204 (32%), Gaps = 14/204 (6%)
Query: 1 MATESQAAIRFGIIGAADIARKLSRA-----ITLAPNAVLSAVASRSLEKATNFAKANNF 55
S IR G +G +++ L+ + A+ + +L+ + +
Sbjct: 9 STVPSSRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQL 68
Query: 56 PPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAI------SVAQKKKHLLMEKPMALN 109
A + S E+ KDID + + + H + S ++L +E +A +
Sbjct: 69 KH-ATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAAS 127
Query: 110 VAEFDVILNACEENG-VQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDA 168
V + + + + ++ +Q + +N + + L S S D
Sbjct: 128 VQQAEELYSISQQRANLQTIICLQGRYNSVVGNILRIYESIADYHFLGKPESKSSRGPDD 187
Query: 169 EFLKND-IRVKPDLDGLGALGDAG 191
F + +G DA
Sbjct: 188 LFASTKFDKQGFRFEGFPTFKDAI 211
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Score = 66.3 bits (160), Expect = 2e-13
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 9 IRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK-VYGSYE 66
+ I+G A + ++ + A+ S + EKA A P Y +++
Sbjct: 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFD 93
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
+ D IDAVY+ LP S+H ++AI + KH++ EKPMA +VA+ +++A + +
Sbjct: 94 KIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKK 153
Query: 127 LMDGTMWVHNPRTAQMKEFV 146
LM G +N +AQ+
Sbjct: 154 LMIGYRCHYNQFSAQLDHLA 173
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Score = 60.3 bits (145), Expect = 1e-11
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 19/180 (10%)
Query: 9 IRFGIIGAADIARKLSRAI--TLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE 66
IR GI+G AR+L L+ ++AV SR+ A F + V+ SYE
Sbjct: 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEF---AKMVGNPAVFDSYE 60
Query: 67 ALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126
LL+ +DAV L LP +++ + +K H++ EKP++ +V ++ E++
Sbjct: 61 ELLESGLVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT 120
Query: 127 LMDGTMWVHN---PRTAQMKEFVSDPQRFGQLRT----------MHSCFSFAGDAEFLKN 173
+ + N + V++ + L + + +C AG+ F+ +
Sbjct: 121 VYIAENFRENSYQKEFEDFYQVVAE-GKPNDLGSPVQALKDLAFIEACVRSAGNKVFVSS 179
|
| >d1zh8a2 d.81.1.5 (A:132-275) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} Length = 144 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Score = 58.0 bits (139), Expect = 5e-11
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 4/142 (2%)
Query: 135 HNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAE-FLKNDIRVKPDLDGLGALGDAGWY 193
H P + KE V G M+ D + K G L D G +
Sbjct: 1 HVPAFWKAKELVES-GAIGDPVFMNWQIWVGMDENNKYVHTDWRKKPKHVGGFLSDGGVH 59
Query: 194 GIRSILWANDYELPKTVIAMHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLANMTMDI 253
++ + + A+ + G + + +++G V ++ S+
Sbjct: 60 HAAAMRLILGE--IEWISAVAKDLSPLLGGMDFLSSIFEFENGTVGNYTISYSLKGNERF 117
Query: 254 TATGTNGSLQLHDFIIPFREEE 275
TGT G + + I EEE
Sbjct: 118 EITGTKGKISISWDKIVLNEEE 139
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Score = 56.9 bits (136), Expect = 2e-10
Identities = 30/157 (19%), Positives = 59/157 (37%), Gaps = 9/157 (5%)
Query: 9 IRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA 67
+R G++G IA+K + A + L S + KA ++ P +
Sbjct: 2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSS---- 57
Query: 68 LLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127
DAV++ T+ H ++ H+ ++KP+A N+ + + ++ + L
Sbjct: 58 --LAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL 115
Query: 128 MDGTMWVHNPRTAQ-MKEFVSDPQRFGQLRTMHSCFS 163
M G A+ E V + Q Q + +
Sbjct: 116 MVGFNRRFFVGCARHFIECVQN-QTVPQTAGEQAVLA 151
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Score = 55.7 bits (133), Expect = 5e-10
Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 11/147 (7%)
Query: 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEAL 68
IR I+G ++ R + + I P+ L + SR V+ +
Sbjct: 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR----------ATLDTKTPVFDVADVD 53
Query: 69 LDDKDIDAVYLPLPTSMHVKWAISVAQKKKH-LLMEKPMALNVAEFDVILNACEENGVQL 127
D+D ++L + ++ + + + V+ A G
Sbjct: 54 KHADDVDVLFLCMGSATDIPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVA 113
Query: 128 MDGTMWVHNPRTAQMKEFVSDPQRFGQ 154
+ T + + F R Q
Sbjct: 114 LVSTGRNPDFTASSQIAFGRAAHRMKQ 140
|
| >d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase {Zymomonas mobilis [TaxId: 542]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Glucose-fructose oxidoreductase species: Zymomonas mobilis [TaxId: 542]
Score = 54.3 bits (129), Expect = 1e-09
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 5/132 (3%)
Query: 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGI 195
+P + + + + G+L + + S D R++ +L G G+L D G YG+
Sbjct: 1 DPMNRAAVKLIRE-NQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGL 59
Query: 196 RSILWANDYELPKTVIAMHGPVLNEAG---VILSCGASLHWDDGRVATFSCSFLANMTMD 252
+ E P V A N+ V + + G ++ + S+ T
Sbjct: 60 NGTRYLLGEE-PIEVRAYTYSDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSR 118
Query: 253 ITATGTNGSLQL 264
+ G L +
Sbjct: 119 FSVQGDKAVLLM 130
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Score = 41.2 bits (96), Expect = 3e-05
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 9 IRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLE-KATNFAKANNFPPDAKVYGSYE 66
++ IIG+ +I + + + A + A+ A+
Sbjct: 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLI 64
Query: 67 ALLDDKDIDAVYLPLPTSMHV--KWAISVAQKKKHLLMEKPMA 107
L + DID V+ S HV + + A+ L+ P A
Sbjct: 65 KLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAA 107
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 362 | |||
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 100.0 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 100.0 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 100.0 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 100.0 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 100.0 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 99.97 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 99.97 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 99.92 | |
| d1ydwa2 | 171 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 99.91 | |
| d1zh8a2 | 144 | Hypothetical protein TM0312 {Thermotoga maritima [ | 99.84 | |
| d1h6da2 | 162 | Glucose-fructose oxidoreductase {Zymomonas mobilis | 99.81 | |
| d2nvwa2 | 219 | Galactose/lactose metabolism regulatory protein GA | 99.78 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 99.59 | |
| d1xeaa2 | 144 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 99.56 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 99.51 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 98.99 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 98.93 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.9 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.87 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 98.79 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 98.79 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.76 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 98.73 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 98.65 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 98.65 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.65 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 98.64 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.6 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 98.52 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.49 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.45 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.43 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 98.4 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.38 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.34 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.33 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 98.26 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 98.19 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 98.13 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 98.07 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 98.02 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.97 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 97.97 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.92 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.9 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 97.89 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 97.86 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.84 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 97.83 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.83 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.77 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.72 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.71 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.71 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.67 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.63 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 97.63 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.54 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.5 | |
| d1gado1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.44 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 97.4 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.35 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.34 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 97.34 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.31 | |
| d1obfo1 | 173 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.3 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.29 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 97.27 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.26 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.24 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.22 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.21 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.2 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.19 | |
| d1u8fo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.19 | |
| d1rm4a1 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.18 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 97.16 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 97.15 | |
| d1tlta2 | 140 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.14 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 97.14 | |
| d2b4ro1 | 166 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 97.12 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.11 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.09 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.05 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.05 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.04 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.01 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.99 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.97 | |
| d3cmco1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.97 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.96 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.95 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.94 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 96.94 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 96.92 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.91 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.85 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.84 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.83 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.82 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.82 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.81 | |
| d1k3ta1 | 190 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.8 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 96.79 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.78 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.78 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 96.78 | |
| d1hdgo1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.78 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 96.71 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.71 | |
| d1h9aa1 | 195 | Glucose 6-phosphate dehydrogenase, N-terminal doma | 96.59 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.56 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.55 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 96.54 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.48 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.43 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.39 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.38 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.36 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.3 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.28 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 96.24 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.13 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 95.96 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.95 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.88 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.85 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.85 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.77 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.71 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.71 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.7 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 95.67 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.63 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.54 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.42 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.33 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.31 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.2 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.13 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.0 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.86 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 94.86 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.86 | |
| d2bw0a2 | 203 | 10-formyltetrahydrofolate dehydrogenase domain 1 { | 94.82 | |
| d1a2oa1 | 140 | Methylesterase CheB, N-terminal domain {Salmonella | 94.73 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 94.73 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.43 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.42 | |
| d1gr0a1 | 243 | Myo-inositol 1-phosphate synthase {Mycobacterium t | 94.31 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.17 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.15 | |
| d1qkia1 | 203 | Glucose 6-phosphate dehydrogenase, N-terminal doma | 94.02 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 93.98 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 93.36 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 93.18 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 93.11 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 92.92 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.66 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.59 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.55 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.54 | |
| d1dbwa_ | 123 | Transcriptional regulatory protein FixJ, receiver | 92.23 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 92.04 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 92.0 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 91.88 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 91.67 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 91.57 | |
| d1fmta2 | 206 | Methionyl-tRNAfmet formyltransferase {Escherichia | 91.54 | |
| d2g0ta1 | 338 | Hypothetical protein TM0796 {Thermotoga maritima [ | 91.53 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.22 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.21 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 91.13 | |
| d1vr6a1 | 338 | 3-deoxy-D-arabino-heptulosonate-7-phosphate syntha | 91.1 | |
| d1b74a1 | 105 | Glutamate racemase {Aquifex pyrophilus [TaxId: 271 | 90.89 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 90.8 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 90.46 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 90.38 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 90.16 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 90.0 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 89.87 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 89.85 | |
| d1q7ra_ | 202 | Hypothetical protein YaaE {Bacillus stearothermoph | 89.75 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 89.74 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 89.31 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 89.29 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 88.81 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 88.67 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 88.64 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 88.3 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 88.15 | |
| d1vkza2 | 90 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 88.01 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 87.4 | |
| d1dz3a_ | 123 | Sporulation response regulator Spo0A {Bacillus ste | 87.37 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 87.18 | |
| d1p6qa_ | 129 | CheY protein {Sinorhizobium meliloti, CheY2 [TaxId | 87.06 | |
| d1s8na_ | 190 | Probable two-component system transcriptional regu | 86.93 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 86.93 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 86.78 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 86.74 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 86.65 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 86.57 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 86.44 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 86.41 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 86.31 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 85.88 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 85.46 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 84.94 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 84.88 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 83.95 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 83.92 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 83.84 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 83.37 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 83.33 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 83.16 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 83.08 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 82.95 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 82.48 | |
| d1w5fa1 | 194 | Cell-division protein FtsZ {Thermotoga maritima [T | 82.36 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 82.22 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 81.95 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 81.88 | |
| d1u6ka1 | 282 | F420-dependent methylenetetrahydromethanopterin de | 81.78 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.74 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.74 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 81.54 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 81.45 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 81.33 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 81.2 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 80.93 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 80.84 | |
| d1krwa_ | 123 | NTRC receiver domain {Salmonella typhimurium [TaxI | 80.74 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 80.66 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 80.35 | |
| d2r25b1 | 128 | Response regulator Sin1 {Baker's yeast (Saccharomy | 80.21 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 80.19 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 80.14 |
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=6.1e-38 Score=264.99 Aligned_cols=175 Identities=53% Similarity=0.830 Sum_probs=150.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
+|||||||+|.+|+.|++.++..++++|+|+||+++++++.+++++++++..++|+|++++++++++|+|+|+||+..|.
T Consensus 1 kiki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~ 80 (184)
T d1ydwa1 1 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV 80 (184)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhc
Confidence 58999999999999999999999999999999999999999999999987778999999999999999999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEEEeeecCC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD 167 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~ 167 (362)
+++..|+++|+||+||||++.+++++++|.++++++|+.+++++++||+|.+..+|+++ +.||+|..+......
T Consensus 81 ~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~~~~~~k~li---~~iG~I~~~~~~~~~--- 154 (184)
T d1ydwa1 81 EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQEACMVREFA---RLVGEIKNNGAKPDG--- 154 (184)
T ss_dssp HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCHHHHHHHHHT---TCC---------------
T ss_pred chhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeeecChHHHHHHHHH---HhhCCeEEEEEecCC---
Confidence 99999999999999999999999999999999999999999999999999999999998 589999877654211
Q ss_pred cccccCccCcCCCCCCCcccccccchHHH
Q 018020 168 AEFLKNDIRVKPDLDGLGALGDAGWYGIR 196 (362)
Q Consensus 168 ~~~~~~~w~~~~~~~ggg~l~~~g~h~id 196 (362)
|+.... ..||.+.|+++|.+|
T Consensus 155 -------~~~~~~-~~g~~i~d~~~h~iD 175 (184)
T d1ydwa1 155 -------YWPSIS-RKTQLVVDAVKESVD 175 (184)
T ss_dssp -------CHHHHH-HHHHHHHHHHHHHHH
T ss_pred -------CCCCcc-cCCCEEEecchhhcc
Confidence 111111 134888999999988
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=100.00 E-value=1.1e-35 Score=260.68 Aligned_cols=192 Identities=16% Similarity=0.155 Sum_probs=149.6
Q ss_pred CceeEEEEEeccH----HHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 6 QAAIRFGIIGAAD----IARKLSRAITLA-PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 6 ~~~~~v~iiG~G~----~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
.++|||||||+|. ++..|++++++. ++++|+|+||+++++++.++++++++ ....|+|++++++++++|+|+|+
T Consensus 14 ~k~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~iD~V~i~ 92 (237)
T d2nvwa1 14 SRPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK-HATGFDSLESFAQYKDIDMIVVS 92 (237)
T ss_dssp GCCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT-TCEEESCHHHHHHCTTCSEEEEC
T ss_pred CCCeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccc-cceeecchhhcccccccceeecc
Confidence 4679999999975 677899999764 78999999999999999999999985 44679999999999999999999
Q ss_pred CCCcccHHHHHHHHHcC------CeEEEeCCCCCCHHHHHHHHHHHHHc-CCEEEEeeecccChhHHHHHHhhcCC----
Q 018020 81 LPTSMHVKWAISVAQKK------KHLLMEKPMALNVAEFDVILNACEEN-GVQLMDGTMWVHNPRTAQMKEFVSDP---- 149 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~g------k~V~~EKP~~~~~~~~~~l~~~a~~~-~~~~~v~~~~r~~p~~~~~k~~i~~~---- 149 (362)
||+..|.++++.||++| ||||||||++.|++++++|.++++++ ++.+++++++||+|.++.+|++| ++
T Consensus 93 tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~~~~~~v~~~~R~~p~~~~~k~~i-~~~~~~ 171 (237)
T d2nvwa1 93 VKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRYNSVVGNILRIY-ESIADY 171 (237)
T ss_dssp SCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGCCHHHHHHHHHH-HHHHHH
T ss_pred CCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcCCeeEEEEECCcCCHHHHHHHHHH-Hhchhc
Confidence 99999999999999998 59999999999999999999999876 68899999999999999999988 54
Q ss_pred CCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccc--hHHHHHHHH
Q 018020 150 QRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGW--YGIRSILWA 201 (362)
Q Consensus 150 g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~--h~id~~~~l 201 (362)
|.||+|..+++++....... ...++..+...++|.+.+.+. |.+|.+.+.
T Consensus 172 g~iG~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~i~~h~id~v~~~ 223 (237)
T d2nvwa1 172 HFLGKPESKSSRGPDDLFAS--TKFDKQGFRFEGFPTFKDAIILHRLIDAVFRS 223 (237)
T ss_dssp HHC--------------------CCCCCTTCSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CeecCEEEEEEEEcCccccC--cchhccCccccCCCeehhhhhhchhccccccc
Confidence 89999999888765433221 111223334445677777554 999987554
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=9.6e-35 Score=244.39 Aligned_cols=147 Identities=26% Similarity=0.363 Sum_probs=137.9
Q ss_pred CceeEEEEEeccHHHHH-HHHHHhcCCC-cEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 6 QAAIRFGIIGAADIARK-LSRAITLAPN-AVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~-~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|+++||||||+|.+|+. |++.+++.++ ++|++|||+++++++.++++++.+ .+|+|++|+++++++|+|+|+||+
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~---~~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNP---AVFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSC---EEESCHHHHHHSSCCSEEEECCCG
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccc---ceeeeeeccccccccceeeccccc
Confidence 46899999999999986 8999998765 799999999999999999999875 689999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc---ChhHHHHHHhhcCCCCccceE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH---NPRTAQMKEFVSDPQRFGQLR 156 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~---~p~~~~~k~~i~~~g~iG~i~ 156 (362)
..|++++..|+++||||+||||++.+.+++++|.++++++++.+++++++|| +|.+.++++++ ++|.||+|.
T Consensus 78 ~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i-~~G~ig~ig 152 (181)
T d1zh8a1 78 ELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVV-AEGKPNDLG 152 (181)
T ss_dssp GGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHH-HSCCCCSSS
T ss_pred cccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHH-HCCCCccCC
Confidence 9999999999999999999999999999999999999999999999999995 57888999999 889999984
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=100.00 E-value=8.9e-34 Score=245.58 Aligned_cols=152 Identities=26% Similarity=0.377 Sum_probs=141.0
Q ss_pred CceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-CCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 6 QAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-DAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
.+++||||||+|++|.. |++.++.+++++|++|||+++++++.++++||++. .+..|+|++++++++++|+|+|+||+
T Consensus 31 ~~~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~ 110 (221)
T d1h6da1 31 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 110 (221)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred CCCEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence 46899999999999974 78899999999999999999999999999999862 23458999999999999999999999
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTM 158 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i 158 (362)
..|.+++.+|+++||||+||||++.|++++++|.++++++++.+++++++||+|.+.++|+++ +++.+|++...
T Consensus 111 ~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~li-~~~~~g~~i~~ 184 (221)
T d1h6da1 111 SLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYNQFSAQLDHLA-EAVINNKPVRS 184 (221)
T ss_dssp GGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHH-HHHHTTCCCSS
T ss_pred hhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcEEEeeccccCHHHHHHHHHH-HhhhcCCeEee
Confidence 999999999999999999999999999999999999999999999999999999999999999 77888876543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-33 Score=230.77 Aligned_cols=147 Identities=21% Similarity=0.262 Sum_probs=136.8
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+|||||||+|.+|.. |++.++.++++++++|||+++++++.++++++++ .+++++++++ ++|+|+|+||+..|
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~----~~~~~~~l~~--~~D~V~I~tp~~~h 74 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP----YADSLSSLAA--SCDAVFVHSSTASH 74 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC----BCSSHHHHHT--TCSEEEECSCTTHH
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccccc----ccccchhhhh--hcccccccccchhc
Confidence 689999999999985 8999999999999999999999999999999874 7899999986 59999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhH-HHHHHhhcCCCCccceEEEEEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRT-AQMKEFVSDPQRFGQLRTMHSC 161 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~-~~~k~~i~~~g~iG~i~~i~~~ 161 (362)
.+++..|+++||||+||||++.+++++++|.++++++|+.+++++++||+|.+ +++++++ ++|.+|++..++..
T Consensus 75 ~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~~~~~~~~~i-~~g~ig~~~~~~~~ 149 (164)
T d1tlta1 75 FDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFFVGCARHFIECV-QNQTVPQTAGEQAV 149 (164)
T ss_dssp HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHHHHHHHHHHH-HHTCCCTTSGGGGS
T ss_pred cccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEeccccCHHHHHHHHHHH-HCCCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999876 5799999 89999998765543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=99.97 E-value=5.8e-32 Score=224.36 Aligned_cols=142 Identities=18% Similarity=0.246 Sum_probs=132.7
Q ss_pred eeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.|||||||+|.+|.. |++.+++.++++++ +||+++++++.++++++++ ..|+|++++++ +++|+|+|+||++.|
T Consensus 1 tirvgiiG~G~~~~~~~~~~l~~~~~~~~~-~~d~~~~~~~~~~~~~~~~---~~~~~~~~ll~-~~iD~V~I~tp~~~H 75 (167)
T d1xeaa1 1 SLKIAMIGLGDIAQKAYLPVLAQWPDIELV-LCTRNPKVLGTLATRYRVS---ATCTDYRDVLQ-YGVDAVMIHAATDVH 75 (167)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEE-EECSCHHHHHHHHHHTTCC---CCCSSTTGGGG-GCCSEEEECSCGGGH
T ss_pred CeEEEEEcCCHHHHHHHHHHHHhCCCcEEE-EEECCHHHHHHHHHhcccc---cccccHHHhcc-cccceeccccccccc
Confidence 489999999999975 89999999999987 8999999999999999976 67999999997 489999999999999
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceE
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLR 156 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~ 156 (362)
++++.+|+++||||+||||++.+++++++|.++++++|+.++++++ ||+|.++.+++.+ ..|.+|.+.
T Consensus 76 ~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~-r~~~~~~~~~~~~-~~G~ig~~~ 143 (167)
T d1xeaa1 76 STLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFN-GFDAMVQDWLQVA-AAGKLPTHI 143 (167)
T ss_dssp HHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG-THHHHHHHHHHHH-HHTCCCHHH
T ss_pred ccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeC-cCCHHHHHHHHHh-hcCCCCcEE
Confidence 9999999999999999999999999999999999999999999996 8999999999999 778888654
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=9.1e-32 Score=224.19 Aligned_cols=148 Identities=16% Similarity=0.182 Sum_probs=126.5
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
...++||||||+|++|+.|++.+.+.++.+++++++....+ ..+...+ ..+.|++|+|+++++|+|+|+||+.
T Consensus 4 ~~~k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 4 NSGKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDE-----VRQISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp CCCSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETT-----EEBCCHHHHHHCSSEEEEEECSCGG
T ss_pred CCCCcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhc-----cCcCCHHHHHhCCCcchhhhccccc
Confidence 35689999999999999999999887655555555432211 1111122 3466999999999999999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCccceEEEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRFGQLRTMHS 160 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~iG~i~~i~~ 160 (362)
.|.+++..|+++||||+||||++.|++++++|.++++++|+.+++++++||+|.++++|++| ++|.||+|...+.
T Consensus 77 ~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i-~~~~lG~i~~~~~ 151 (172)
T d1lc0a1 77 SHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLKNIFLKDQDIF-VQKLLDQVSAEDL 151 (172)
T ss_dssp GHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGTTHHHHHHHHH-HHHHTTCSCHHHH
T ss_pred ccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCCeEEEecHHHhhHHHHHHHHHH-HcCCCCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 8899999876554
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=99.92 E-value=8.3e-26 Score=187.16 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=119.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++|||||||+|.+|+.|++.+++++++++++|+|++++... . .+...+.+++++++ ++|+|+|+||+..|
T Consensus 2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~----~----~~~~~~~~~~~~~~--~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT----K----TPVFDVADVDKHAD--DVDVLFLCMGSATD 71 (170)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS----S----SCEEEGGGGGGTTT--TCSEEEECSCTTTH
T ss_pred CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc----c----cccccchhhhhhcc--ccceEEEeCCCccc
Confidence 48999999999999999999999999999999999865322 1 22345666666665 59999999999999
Q ss_pred HHHHHHHHHcCCeEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEEe-------eecccChhHHHHHHhhcCCCCccceEE
Q 018020 87 VKWAISVAQKKKHLL-MEKPMALNVAEFDVILNACEENGVQLMDG-------TMWVHNPRTAQMKEFVSDPQRFGQLRT 157 (362)
Q Consensus 87 ~~~~~~al~~gk~V~-~EKP~~~~~~~~~~l~~~a~~~~~~~~v~-------~~~r~~p~~~~~k~~i~~~g~iG~i~~ 157 (362)
.+++.+||++||||+ ||||.+.+.+++++|.++|+++|..++++ ++.|+.+..+.+++++ +.|.+|.+..
T Consensus 72 ~~~a~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~-~~G~ig~~~~ 149 (170)
T d1f06a1 72 IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGNVALVSTGRNPDFTASSQIAFGRAAHRMK-QQGQSGAFTV 149 (170)
T ss_dssp HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTCEEECSCSCHHHHHHHHHHHHHHHHHHHH-HTTCCEEECG
T ss_pred HHHHHHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCceEEEeceeccchhHHHHHHHHHHHHHHH-hcCCCcceEe
Confidence 999999999999966 88999989999999999999999999988 6677777778888998 8888887654
|
| >d1ydwa2 d.81.1.5 (A:134-304) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=2.3e-24 Score=178.79 Aligned_cols=168 Identities=72% Similarity=1.222 Sum_probs=143.5
Q ss_pred ChhHHHHHHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeec
Q 018020 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHG 215 (362)
Q Consensus 136 ~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~ 215 (362)
+|.++++|++|+++|.||+|.+|++.|.+..+..+...+||.++...|||+|+|+|+|.+|+++|++|...++.+.+...
T Consensus 1 hP~~~~ikeli~d~g~iG~i~~i~a~f~~~~~~~~~~~~~r~~~~~~GGG~l~D~G~y~i~~~~~l~g~~~~~~~~~~~~ 80 (171)
T d1ydwa2 1 NPRTALLKEFLSDSERFGQLKTVQSCFSFAGDEDFLKNDIRVKPGLDGLGALGDAGWYAIRATLLANNFELPKTVTAFPG 80 (171)
T ss_dssp SGGGTTTTTGGGCTTTTCSEEEEEEEEEEECCHHHHHHCGGGCTTSSTTHHHHHTHHHHHHHHHHHTTTCCCSEEEECSC
T ss_pred CccHHHHHHHHhccCcCCCEEEEEEEEeccCchhhccceeecccccccCCchhhcchHHHHHHHHHhCCccceEEEeeec
Confidence 69999999999336899999999999998888777788999999998889999999999999999999766788888765
Q ss_pred cccCCCCeeEeeEEEEEeCCCcEEEEEEeeeeCCceeEEEEeccceEEEcceeccCCCCcceEEeccccccccccccccc
Q 018020 216 PVLNEAGVILSCGASLHWDDGRVATFSCSFLANMTMDITATGTNGSLQLHDFIIPFREEEASYFTNTRCFFNDLVTGWVP 295 (362)
Q Consensus 216 ~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~~~~~~v~G~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (362)
......++++.+.++++|+||+++++++++..+...+++|+|++|+|.+++...+.......|....+....+...+|..
T Consensus 81 ~~~~~~~vdd~~~~~l~f~nG~~a~~~~s~~~~~~~~~~I~GtkG~I~i~~~~~P~~~~~~~~~~~~~~~~~~~~~gw~~ 160 (171)
T d1ydwa2 81 AVLNEAGVILSCGASLSWEDGRTATIYCSFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWFNDLVTAWVS 160 (171)
T ss_dssp CEECTTSCEEEEEEEEECSSSCEEEEEEESEEEEEEEEEEEESSEEEEESSCSSCSBTTEEEEEEEESCCBCTTSSSBSS
T ss_pred cccCCCCCccEEEEEEEeCCCceEEEEeeeeecCCCEEEEEeCcEEEEECCccCCCCCCeeEEEecCCCeeeccccccCc
Confidence 55566789999999999999999999999998888899999999999999876655555566666666666777788988
Q ss_pred CCcceeee
Q 018020 296 LPSEHVVT 303 (362)
Q Consensus 296 ~~~~~~~~ 303 (362)
.+..+...
T Consensus 161 ~p~~~~v~ 168 (171)
T d1ydwa2 161 PPSEHTVK 168 (171)
T ss_dssp CCEEEEEE
T ss_pred ccccceee
Confidence 87776653
|
| >d1zh8a2 d.81.1.5 (A:132-275) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=4.7e-21 Score=153.96 Aligned_cols=128 Identities=20% Similarity=0.241 Sum_probs=113.0
Q ss_pred cChhHHHHHHhhcCCCCccceEEEEEEeeecCC--cccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEE
Q 018020 135 HNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD--AEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIA 212 (362)
Q Consensus 135 ~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~--~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a 212 (362)
|.|.++++|++| ++|.||+|..+++++..... ..+...+|+.+++.+| |.+.|+|+|.+|+++|++| +|++|++
T Consensus 1 ~~P~~~~~k~lI-~~g~iG~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~G-G~l~d~g~H~id~~~~l~G--~~~~v~a 76 (144)
T d1zh8a2 1 HVPAFWKAKELV-ESGAIGDPVFMNWQIWVGMDENNKYVHTDWRKKPKHVG-GFLSDGGVHHAAAMRLILG--EIEWISA 76 (144)
T ss_dssp GCHHHHHHHHHH-HTTTTSSEEEEEEEEEBCCCTTCSGGGCHHHHTTCSTT-THHHHHHHHHHHHHHHHHC--CEEEEEE
T ss_pred CcHHHHHHHHHH-HCCCCCCEEEEEEEEecCcCccccccccccccchhhhh-hhHHHhhHHHHHHHHhccC--CCeEEEE
Confidence 689999999999 99999999999998776533 2345568998888755 8999999999999999999 7999999
Q ss_pred eeccccCCCCeeEeeEEEEEeCCCcEEEEEEeeeeCCceeEEEEeccceEEEcc
Q 018020 213 MHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLANMTMDITATGTNGSLQLHD 266 (362)
Q Consensus 213 ~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~~~~~~v~G~~G~i~~~~ 266 (362)
.........+.+|.+.++++|+||+++++++++..+...+++|+|++|+|.++.
T Consensus 77 ~~~~~~~~~~~~D~~~~~l~~~nG~~~~~~~s~~~~~~~~~~i~G~~G~i~~~~ 130 (144)
T d1zh8a2 77 VAKDLSPLLGGMDFLSSIFEFENGTVGNYTISYSLKGNERFEITGTKGKISISW 130 (144)
T ss_dssp EEECCCTTSSSCCEEEEEEEETTSCEEEEEEESSSBCCCEEEEEESSCEEEEET
T ss_pred EEEeccCCcCcceeEEEEEEcCCCcEEEEEEEeccCCCCEEEEEeCCEEEEEeC
Confidence 977766677889999999999999999999999888888999999999999974
|
| >d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Glucose-fructose oxidoreductase species: Zymomonas mobilis [TaxId: 542]
Probab=99.81 E-value=2.2e-20 Score=153.05 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=113.0
Q ss_pred ChhHHHHHHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeec
Q 018020 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHG 215 (362)
Q Consensus 136 ~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~ 215 (362)
+|.++.+|++| ++|.||+|+.+++.+.+..+..+...+||.+++..|||+|.|+|+|.+|+++|++|. +|+.|++...
T Consensus 1 ~P~~~~~~~li-~~g~iG~i~~v~~~~~~~~~~~~~~~~wr~~~~~~ggG~l~d~g~h~id~~~~l~g~-~~~~v~a~~~ 78 (162)
T d1h6da2 1 DPMNRAAVKLI-RENQLGKLGMVTTDNSDVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGE-EPIEVRAYTY 78 (162)
T ss_dssp CHHHHHHHHHH-HTTSSCSEEEEEEEEECCCCTTSHHHHGGGCHHHHSSSHHHHTHHHHHHHHHHHHTS-CEEEEEEEEE
T ss_pred ChhHHHHHHHH-HCCCCCCeEEEEEEEecccCCCCCccccccchhhchhhhhhhcchhHHHHHHHHhcC-CCeEEEEEee
Confidence 58999999999 999999999999999887666666678999988878899999999999999999995 5899998864
Q ss_pred ccc---CCCCeeEeeEEEEEeCCCcEEEEEEeeeeCCceeEEEEeccceEEEcc
Q 018020 216 PVL---NEAGVILSCGASLHWDDGRVATFSCSFLANMTMDITATGTNGSLQLHD 266 (362)
Q Consensus 216 ~~~---~~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~~~~~~v~G~~G~i~~~~ 266 (362)
... ...+++|++.++++|+||+++++++++..+...+++|+|++|+|.+++
T Consensus 79 ~~~~~~~~~~v~d~~~~~~~~~~G~~~~~~~s~~~~~~~~~~I~GtkG~i~~~~ 132 (162)
T d1h6da2 79 SDPNDERFVEVEDRIIWQMRFRSGALSHGASSYSTTTTSRFSVQGDKAVLLMDP 132 (162)
T ss_dssp CCTTCGGGSSSCSEEEEEEEETTSCEEEEEEESSSCCEEEEEEEESSCEEEESS
T ss_pred cccccccccccceeeEEEEEcCCCeEEEEEEecccCCCCEEEEEEcccEEEEcC
Confidence 322 234678999999999999999999999888888899999999999974
|
| >d2nvwa2 d.81.1.5 (A:155-373) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=99.78 E-value=1.2e-19 Score=155.64 Aligned_cols=187 Identities=9% Similarity=-0.022 Sum_probs=106.1
Q ss_pred ChhHHHHHHhhcCCCCccceEEEEEEeeecCC--c-ccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEE
Q 018020 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGD--A-EFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIA 212 (362)
Q Consensus 136 ~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~--~-~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a 212 (362)
+|.++++|++| ++|.||+|..+++.+..... . .+...+|+.+++.+ ||.|.|+|+|.+|+++||+|. +|++|+|
T Consensus 2 ~P~~~~~k~lI-~~G~iG~v~~v~~~~~~~~~~~~~~~~~~~w~~~~~~g-GG~l~d~g~H~iD~~~~l~G~-~~~~V~a 78 (219)
T d2nvwa2 2 SPYIVRAKELI-SEGCIGDINSIEISGNGGWYGYERPMRSPEYLYDIESG-VNLISNSFGHTIDVLQYITGS-YFQKINA 78 (219)
T ss_dssp CHHHHHHHHHH-HTTTTCSEEEEEEEEECSBSSSEEETTCCGGGGCGGGS-CSTTTTHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred ChHHHHHHHHH-HCCCCcCeEEEEEEEEcccccccccccCcchhhccccc-CcchhhhhhhhhhhhHhhcCC-CceEEEE
Confidence 69999999999 89999999999998765322 2 23345788888764 599999999999999999994 5899999
Q ss_pred eecccc----------------CCCCeeEeeEEEEEeCCCcEEEEEEeeeeC------CceeEEEEeccceEEEcceecc
Q 018020 213 MHGPVL----------------NEAGVILSCGASLHWDDGRVATFSCSFLAN------MTMDITATGTNGSLQLHDFIIP 270 (362)
Q Consensus 213 ~~~~~~----------------~~~~~~d~~~~~~~~~~G~~~~~~~~~~~~------~~~~~~v~G~~G~i~~~~~~~~ 270 (362)
...... ...+++|++.++++|+||+++.+...+... ...+++|+|++|+|.+++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~f~~G~~~~~~~~~~~~~~~~~~~~~~~~I~Gs~G~l~~~~~~~~ 158 (219)
T d2nvwa2 79 MISNNIPTQFLLDENGKRTKETISKTCPDHLLFQGILENGKVPVSCSFKGGTPVKKLTKNLVIDIHGTKGDLKIEGDAGF 158 (219)
T ss_dssp EEECCCSEEEEEC--CCCCSCEEECCSCCEEEEEEEESGGGCEEEEEEECBSSCCSSSCSEEEEEEESSCEEEEEEC---
T ss_pred EeeeecccccccccccccccccccccceeEEEEEEEeCCCcEEEEEEEEeeccccCCCCceeeEEEecccEEEEecCCCc
Confidence 964322 123578999999999999988665554432 2457999999999999854322
Q ss_pred CCCCcceEEecccccccccccccccCCcceeeecCCchhHHHHHHHHHHHHhhhcCCCCCCCchHhHHHHHH
Q 018020 271 FREEEASYFTNTRCFFNDLVTGWVPLPSEHVVTTDIPQEACMVREFSRLVANIKNGSKPEQKWPIISRKTQL 342 (362)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~e~~l~~~~ 342 (362)
.............. . .............++..|.++++++.+|... .++++++++
T Consensus 159 ~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~e 213 (219)
T d2nvwa2 159 VEISNLVLYFYGIK-------------N---GNGSSNGTDNNGAAAIKDKEKVTKSPSPSTG-TSEEEQTME 213 (219)
T ss_dssp ---CCEEEEEEEES-------------C---C----------------------------------CCEEEE
T ss_pred cccCcceeEecCcc-------------c---cccccCCCCcchHHHHHHHHHHcCCCCCCCC-HHHHHHHhh
Confidence 11111111111000 0 0011222334556788888888866655544 444554443
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=99.59 E-value=1.5e-15 Score=122.22 Aligned_cols=96 Identities=21% Similarity=0.280 Sum_probs=82.3
Q ss_pred ceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHH-HHHHHHHHcCCCCCCcccCCHHHHhcC---CCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLE-KATNFAKANNFPPDAKVYGSYEALLDD---KDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~~---~~~D~V~i~~ 81 (362)
+++||||||+|.+|.. +.+.++.+|.++++++++++++ +..++++++|++ ..+.++++++++ .++|+|+++|
T Consensus 3 kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~---~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 3 QKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVT---TTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCC---EESSHHHHHHHSGGGGGEEEEEECS
T ss_pred CCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCc---ccccceeeeeecccccccCEEEEcC
Confidence 5899999999999985 6788889999999999999876 456789999986 567778888764 4699999999
Q ss_pred CCcccHH--HHHHHHHcCCeEEEeCC
Q 018020 82 PTSMHVK--WAISVAQKKKHLLMEKP 105 (362)
Q Consensus 82 ~~~~h~~--~~~~al~~gk~V~~EKP 105 (362)
|+..|.+ .+.+++++|++|+..+|
T Consensus 80 pag~h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 80 SASAHVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp CHHHHHHHHHHHHHHCTTCEEEECST
T ss_pred CchhHHHhHHHHHHHHcCCEEEEccc
Confidence 9988866 55778999999999998
|
| >d1xeaa2 d.81.1.5 (A:123-266) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=99.56 E-value=2.3e-15 Score=120.15 Aligned_cols=117 Identities=15% Similarity=0.002 Sum_probs=83.3
Q ss_pred cccChhHHHHHHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEE
Q 018020 133 WVHNPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIA 212 (362)
Q Consensus 133 ~r~~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a 212 (362)
+||+|.|+++|+.+ ++|.+|+|..+++..+....+. .+.+.|+|.++|.||+++||+|. +|++|++
T Consensus 1 RRf~P~~~~~~~~~-~~g~~G~~~~v~~~~~~~~~p~------------~~~~~l~d~~iH~iD~~~~l~g~-~~~~v~a 66 (144)
T d1xeaa2 1 RRHIPLYNQHLSEL-AQQECGALRSLRWEKHRHALPG------------DIRTFVFDDFIHPLDSVNLSRQC-NLDDLHL 66 (144)
T ss_dssp GGCCHHHHHHCHHH-HHTSCTTCSEEEEEEECBSCCB------------CHHHHHHTTTHHHHHHHCTTCCC-SCTTEEE
T ss_pred CCcCHHHHHHHHHH-HcCCCCCcEEEEEEeccCCCCC------------CCCceEEEccccHHHHHHHHcCC-CceEEEE
Confidence 69999999999999 8999999999997654332221 23489999999999999999995 5999999
Q ss_pred eeccccCCCCeeEeeEEEEEeCCCcEEEEEEeeeeCC-ceeEEEEeccceEEEcce
Q 018020 213 MHGPVLNEAGVILSCGASLHWDDGRVATFSCSFLANM-TMDITATGTNGSLQLHDF 267 (362)
Q Consensus 213 ~~~~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~v~G~~G~i~~~~~ 267 (362)
.... ..+..+.+.+.|++.++....+. ++..+. ..+++|+|++|++.+++.
T Consensus 67 ~~~~---~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~e~iev~G~~G~l~v~~~ 118 (144)
T d1xeaa2 67 TYHM---SEGLLARLDVQWQTGDTLLHASM-NRQFGITTEHVTASYDNVAYLFDSF 118 (144)
T ss_dssp EEEE---ETTEEEEEEEEEEETTEEEEEEE-ETTBSSCEEEEEEEETTEEEEESSS
T ss_pred Eeec---cCccceeEEEEECCCCEEEEEEE-eccccCCcEEEEEEcCCCEEEEecc
Confidence 8432 22334445555555444322222 222222 346999999999999864
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.99 E-value=2.9e-09 Score=85.62 Aligned_cols=111 Identities=22% Similarity=0.340 Sum_probs=88.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||||||+|.||...+..|.+. +++|. ++|+++++++.+.+... ....+.+|+++. .|+|++++|+....+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~-G~~V~-~~d~~~~~~~~~~~~~~-----~~~~~~~e~~~~--~d~ii~~v~~~~~v~ 71 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA-GYSLV-VSDRNPEAIADVIAAGA-----ETASTAKAIAEQ--CDVIITMLPNSPHVK 71 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHTTC-----EECSSHHHHHHH--CSEEEECCSSHHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC-CCeEE-EEeCCcchhHHHHHhhh-----hhcccHHHHHhC--CCeEEEEcCCHHHHH
Confidence 6899999999999999999876 78865 89999999998876543 578999999986 999999999987666
Q ss_pred HHHH----HH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 89 WAIS----VA---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 89 ~~~~----al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
-+.. .+ +.| .++++-. +.+++..+++.+.+++.|..+..+
T Consensus 72 ~v~~~~~~~~~~~~~g-~iiid~s-T~~p~~~~~~~~~~~~~g~~~vda 118 (161)
T d1vpda2 72 EVALGENGIIEGAKPG-TVLIDMS-SIAPLASREISDALKAKGVEMLDA 118 (161)
T ss_dssp HHHHSTTCHHHHCCTT-CEEEECS-CCCHHHHHHHHHHHHTTTCEEEEC
T ss_pred HHHhCCcchhhccCCC-CEEEECC-CCCHHHHHHHHHHHHHcCCceecc
Confidence 5541 22 233 4566633 668999999999999998876644
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.93 E-value=3.5e-09 Score=85.96 Aligned_cols=96 Identities=19% Similarity=0.259 Sum_probs=75.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC-------------CCCcccCCHHHHhcCCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP-------------PDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~-------------~~~~~~~~~~e~l~~~~~ 74 (362)
++||||.|+|.||+.+++++...|+++||+|.|+.+.........++.+ .+..+..++.++++ ++
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~--~v 78 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK--TS 78 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH--HC
T ss_pred CeEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhh--cC
Confidence 4899999999999999999999999999999998765444444443321 11233445566655 49
Q ss_pred cEEEEcCCCcccHHHHHHHHHcCCeEEEeCC
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKKKHLLMEKP 105 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP 105 (362)
|+|+-|||...+.+.+...+++|+.+++.-|
T Consensus 79 DiViecTG~f~~~e~a~~hl~~G~KvIi~~~ 109 (178)
T d1b7go1 79 DIVVDTTPNGVGAQYKPIYLQLQRNAIFQGG 109 (178)
T ss_dssp SEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred CEEEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence 9999999999999999999999988887655
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.90 E-value=2.5e-09 Score=85.05 Aligned_cols=105 Identities=12% Similarity=0.168 Sum_probs=81.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||||||+|.||..++..|.+. +++++. +++++ ...+..++..+ +..+.+|++++ .|+|++++|+....
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~-g~~v~~-~~~~~~~~~~~~~~~~~------~~~~~~e~~~~--~diIi~~v~~~~~~ 70 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR-GVEVVT-SLEGRSPSTIERARTVG------VTETSEEDVYS--CPVVISAVTPGVAL 70 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT-TCEEEE-CCTTCCHHHHHHHHHHT------CEECCHHHHHT--SSEEEECSCGGGHH
T ss_pred CEEEEEcHHHHHHHHHHHHHHC-CCeEEE-EcCchhHHHHHhhhccc------ccccHHHHHhh--cCeEEEEecCchHH
Confidence 6899999999999999999887 788774 55544 33444444443 46788999886 99999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+.+..+...-.+++++-- +.+.+..+++.+.+++.+
T Consensus 71 ~~~~~~~~~~~~~~id~s-t~~p~~~~~l~~~~~~~~ 106 (152)
T d1i36a2 71 GAARRAGRHVRGIYVDIN-NISPETVRMASSLIEKGG 106 (152)
T ss_dssp HHHHHHHTTCCSEEEECS-CCCHHHHHHHHHHCSSSE
T ss_pred HHHHhhcccCCceeeccC-cCCHHHHHHHHHHHhccC
Confidence 988888877677888732 457788888888776554
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.87 E-value=7.3e-09 Score=82.29 Aligned_cols=97 Identities=18% Similarity=0.321 Sum_probs=71.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
||||+||+|.||..++..|.+. +.++. +++++.++.+.+++++|+ ....|.+++++. .|+|+++++|..-.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~-~~~i~-v~~r~~~~~~~l~~~~g~----~~~~~~~~~~~~--~dvIilavkp~~~~~ 72 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT-PHELI-ISGSSLERSKEIAEQLAL----PYAMSHQDLIDQ--VDLVILGIKPQLFET 72 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS-SCEEE-EECSSHHHHHHHHHHHTC----CBCSSHHHHHHT--CSEEEECSCGGGHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhC-CCeEE-EEcChHHhHHhhccccce----eeechhhhhhhc--cceeeeecchHhHHH
Confidence 6899999999999999999876 46655 899999999999999986 477899999985 999999998754333
Q ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHH
Q 018020 89 WAISVAQKKKHLLMEKPMALNVAEFDV 115 (362)
Q Consensus 89 ~~~~al~~gk~V~~EKP~~~~~~~~~~ 115 (362)
+...++.++.|+. =-.+.+.+..++
T Consensus 73 -vl~~l~~~~~iis-~~agi~~~~l~~ 97 (152)
T d2ahra2 73 -VLKPLHFKQPIIS-MAAGISLQRLAT 97 (152)
T ss_dssp -HHTTSCCCSCEEE-CCTTCCHHHHHH
T ss_pred -HhhhcccceeEec-ccccccHHHHHh
Confidence 3444444444442 222445555443
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.79 E-value=7.1e-08 Score=77.25 Aligned_cols=111 Identities=19% Similarity=0.221 Sum_probs=87.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
.|||+||+|.||..++..|.+. +++|. ++|+++++.+.+..... ....+..|++.. .|+|+++.|+....+
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~-g~~v~-~~d~~~~~~~~~~~~~~-----~~~~~~~e~~~~--~diii~~v~~~~~~~ 72 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKA-GYLLN-VFDLVQSAVDGLVAAGA-----SAARSARDAVQG--ADVVISMLPASQHVE 72 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSSHHHHHHHHHTTC-----EECSSHHHHHTS--CSEEEECCSCHHHHH
T ss_pred CEEEEEEEHHHHHHHHHHHHHC-CCeEE-EEECchhhhhhhhhhhc-----cccchhhhhccc--cCeeeecccchhhHH
Confidence 4799999999999999999887 67755 89999999888765432 567899999986 899999999987655
Q ss_pred HHHH-------HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 89 WAIS-------VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 89 ~~~~-------al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
.+.. .+..| .++++-. +.+++..+++.+.++++|+.+..+
T Consensus 73 ~v~~~~~~~~~~l~~g-~iiid~s-t~~p~~~~~~~~~~~~~gi~~~da 119 (162)
T d3cuma2 73 GLYLDDDGLLAHIAPG-TLVLECS-TIAPTSARKIHAAARERGLAMLDA 119 (162)
T ss_dssp HHHHSTTCHHHHSCTT-CEEEECS-CCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhccccccccCCCC-CEEEECC-CCCHHHHHHHHHHHHHCCCcEEec
Confidence 4432 22233 4666644 678999999999999999887754
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.79 E-value=1.6e-08 Score=81.58 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=72.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--------------CCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--------------DAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~e~l~~~~ 73 (362)
++||||.|+|.||+.+++++...|++++|+|.|+++........+++.+- +.....++.++++ +
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 79 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLE--K 79 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHT--T
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhc--c
Confidence 59999999999999999999999999999999987665555555655430 1122234445544 5
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCe-EEEe
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~-V~~E 103 (362)
+|+|+=||+.....+.+..-+++|+. |++-
T Consensus 80 vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s 110 (172)
T d2czca2 80 VDIIVDATPGGIGAKNKPLYEKAGVKAIFQG 110 (172)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHHTCEEEECT
T ss_pred CCEEEECCCCCCCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999999999999954 5543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.76 E-value=9.3e-09 Score=81.68 Aligned_cols=69 Identities=14% Similarity=0.218 Sum_probs=56.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|||++||+|.||...+..|.+....++. ++||++++++++++++++ ...++.+++ + +.|+|+++++|..
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~-v~~r~~~~~~~l~~~~~~----~~~~~~~~v-~--~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIY-IANRGAEKRERLEKELGV----ETSATLPEL-H--SDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEE-EECSSHHHHHHHHHHTCC----EEESSCCCC-C--TTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEE-EEeCChhHHHHhhhhccc----ccccccccc-c--ccceEEEecCHHH
Confidence 6899999999999999988766446654 899999999999999986 466776664 3 4899999999743
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=1.7e-09 Score=86.55 Aligned_cols=119 Identities=19% Similarity=0.195 Sum_probs=91.3
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHH--HHHHHHcCC-CCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKA--TNFAKANNF-PPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~--~~~~~~~~~-~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+++|||+|+|+ |.||+..+..+.+.++++|++.+++..... +.+.+-.+. +.++..+++++++++. +|+|+-.|
T Consensus 2 ~s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~--~DViIDFs 79 (162)
T d1diha1 2 DANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDD--FDVFIDFT 79 (162)
T ss_dssp CCBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTS--CSEEEECS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcc--cceEEEec
Confidence 35899999996 999999999999999999999998743210 111111111 1334577888887774 99999999
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
.|..-.+.+..|+++|+++.+-.. +.+.++.+.|.+++++.++.+
T Consensus 80 ~p~~~~~~~~~a~~~~~~~ViGTT-G~~~~~~~~i~~~a~~ipi~~ 124 (162)
T d1diha1 80 RPEGTLNHLAFCRQHGKGMVIGTT-GFDEAGKQAIRDAAADIAIVF 124 (162)
T ss_dssp CHHHHHHHHHHHHHTTCEEEECCC-CCCHHHHHHHHHHTTTSCEEE
T ss_pred cHHHHHHHHHHHHhccceeEEecC-CCcHHHHHHHHHHcCCCCEEE
Confidence 999999999999999999999765 568888888888887755433
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.65 E-value=3.1e-07 Score=70.58 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=87.5
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
||+|+|+ |.||+.....+.+.+++++++.+|+.. ++.++ .+.++|+|+-.|.|..-.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~--------------------~~~~~-~~~~~DvvIDFS~p~~~~~ 59 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD--------------------PLSLL-TDGNTEVVIDFTHPDVVMG 59 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC--------------------CTHHH-HTTTCSEEEECCCTTTHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC--------------------chhhh-ccccCCEEEEcccHHHHHH
Confidence 7999995 999999999999999999999998531 22222 3347999999999999999
Q ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHH-HHcCCEEEEeeecccChhHHHHHHhh
Q 018020 89 WAISVAQKKKHLLMEKPMALNVAEFDVILNAC-EENGVQLMDGTMWVHNPRTAQMKEFV 146 (362)
Q Consensus 89 ~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a-~~~~~~~~v~~~~r~~p~~~~~k~~i 146 (362)
.+..|+++|+++.+-.. +.+.++.++|.+.+ +.++++++...|+ +-.+..+.+++
T Consensus 60 ~~~~~~~~~~~~ViGTT-G~~~~~~~~l~~~~~~~~~ipil~apNf--SlGvnll~~l~ 115 (135)
T d1yl7a1 60 NLEFLIDNGIHAVVGTT-GFTAERFQQVESWLVAKPNTSVLIAPNF--TSFVPGVLLAV 115 (135)
T ss_dssp HHHHHHHTTCEEEECCC-CCCHHHHHHHHHHHHSCTTCEEEECSCC--GGGHHHHHHHH
T ss_pred HHHHHHhcCCCEEEecc-ccchhHHHHHHHHHHhcCCCCEEEcCCc--cHHHHHHHHHH
Confidence 99999999999998544 56788888888854 4567777766554 44555555554
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=2e-08 Score=80.91 Aligned_cols=138 Identities=9% Similarity=0.060 Sum_probs=93.5
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCC---CcEEEEEEcCCHH-------------HHHHHHHHcCCCCCCcccCCHHHHh
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAP---NAVLSAVASRSLE-------------KATNFAKANNFPPDAKVYGSYEALL 69 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~---~~~vv~v~d~~~~-------------~~~~~~~~~~~~~~~~~~~~~~e~l 69 (362)
+++++|+|+|+|.+|+..++.+.+.. +.++++++|+... ..+........+ ....+++.+.+
T Consensus 2 ~k~i~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (168)
T d1ebfa1 2 TKVVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAASTTK--TLPLDDLIAHL 79 (168)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTCCCB--CCCHHHHHHHH
T ss_pred CCEEEEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhcccc--cccHHHHHHHh
Confidence 47899999999999999988886554 3688888874211 011111111111 01122233333
Q ss_pred -cCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE--eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 70 -DDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM--EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 70 -~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~--EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
.....|+++.+|....-..+..+||++|+||.+ =+|++.+.+..++|.+.+++++..++.+.-----|.+..++.+
T Consensus 80 ~~~~~~~vivd~t~~~~~~~~~~~aL~~G~hVVTANK~~la~~~~~~~~L~~~a~~~~~~~yEatVgaGiPiI~~l~~l 158 (168)
T d1ebfa1 80 KTSPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATVGAGLAAVTAAGVL 158 (168)
T ss_dssp TTCSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEECGGGTTTTSHHHHHHHHH
T ss_pred ccCCCceEEEEecCChHHHHHHHHHHHcCCeEEecCcccccCCHHHHHHHHHHHHHCCcEEEeCeeeechhHHHHHHHc
Confidence 345677888899888878888899999999986 3499999999999988888777644444444567887777644
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.65 E-value=1e-07 Score=77.22 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=90.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-||.|||+|.+|...+..|.+. +.+|+ |+||+.++++.++++++.. .........++.+. ..|.++.++|..
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~-g~~V~-v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~i~~~~~~ 78 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS-GIKVT-VACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVA--KHDLVISLIPYT 78 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT-TCEEE-EEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHT--TSSEEEECSCGG
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCEEE-EEECChHHHHHHHhcccccccccccccchhhhHhhhh--ccceeEeeccch
Confidence 4789999999999999999877 67854 9999999999999987632 01111223344455 489999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
.+...+..+++.+.|++. ++...+..+++.+.++..+..++....
T Consensus 79 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~ 123 (182)
T d1e5qa1 79 FHATVIKSAIRQKKHVVT---TSYVSPAMMELDQAAKDAGITVMNEIG 123 (182)
T ss_dssp GHHHHHHHHHHHTCEEEC---SSCCCHHHHHTHHHHHHTTCEEECSCB
T ss_pred hhhHHHHHHHhhccceee---cccCcHHHHHHHHHhccccceeehhhh
Confidence 999999999999999876 344556778888999998888775433
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=98.64 E-value=1.1e-07 Score=76.20 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=62.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||+|||+|.||..++..|++. +.+|+ ++|+++++++++.+...+. ...++. +.++ +.|+|++++|+..-.+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~-g~~V~-~~d~~~~~~~~a~~~~~~~---~~~~~~-~~~~--~~DiIilavp~~~~~~ 72 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR-GHYLI-GVSRQQSTCEKAVERQLVD---EAGQDL-SLLQ--TAKIIFLCTPIQLILP 72 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHTTSCS---EEESCG-GGGT--TCSEEEECSCHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC-CCEEE-EEECCchHHHHHHHhhccc---eeeeec-cccc--ccccccccCcHhhhhh
Confidence 6899999999999999999876 78877 5799998887655433221 234444 4455 4999999999877666
Q ss_pred HHHHHHHc--CCeEEEe
Q 018020 89 WAISVAQK--KKHLLME 103 (362)
Q Consensus 89 ~~~~al~~--gk~V~~E 103 (362)
++...... ...++++
T Consensus 73 vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 73 TLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHHGGGSCTTCEEEE
T ss_pred hhhhhhhhcccccceee
Confidence 66665443 3556665
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.60 E-value=4.3e-07 Score=73.61 Aligned_cols=121 Identities=12% Similarity=0.137 Sum_probs=86.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~~~h 86 (362)
+-+||+||+|.||..++..|.+. +++|+ ++||++++.+.+.++...........+.+++.+. .+.|.++++.++...
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~-G~~V~-v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~ 79 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDH-GFVVC-AFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHT-TCCEE-EECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHC-CCeEE-EEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHH
Confidence 45799999999999999999887 67765 8999999999998764322112234555555432 358999999988765
Q ss_pred HHHHHHH-H---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 87 VKWAISV-A---QKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 87 ~~~~~~a-l---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
..-+... + +.|+ ++++- -+.++++.+++.+.+++.|..+.....
T Consensus 80 v~~v~~~l~~~~~~g~-iiid~-sT~~~~~~~~~~~~~~~~g~~~ldapv 127 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGD-IIIDG-GNSEYRDTMRRCRDLKDKGILFVGSGV 127 (176)
T ss_dssp HHHHHHHHHHHCCTTC-EEEEC-SCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHHHhccccCc-EEEec-CcchhHHHHHHHHHHHhcCCceecccc
Confidence 4433332 2 3343 56653 367899999999999999988875533
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=98.52 E-value=3.7e-07 Score=73.29 Aligned_cols=96 Identities=16% Similarity=0.198 Sum_probs=72.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--------------CCcccCCHHHHhcCCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--------------DAKVYGSYEALLDDKD 73 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--------------~~~~~~~~~e~l~~~~ 73 (362)
|+||||-|+|.||+..++.+...+++++++|.|+++.......-+++.+- +..+..+..++++ +
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~--~ 78 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLD--E 78 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHH--T
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhc--C
Confidence 37999999999999999999999999999999987654433444444320 1112234445544 5
Q ss_pred CcEEEEcCCCcccHHHHHHHHHcCCeEEEeCC
Q 018020 74 IDAVYLPLPTSMHVKWAISVAQKKKHLLMEKP 105 (362)
Q Consensus 74 ~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP 105 (362)
+|+|+-|||.....+-+..-+++|+.+++--|
T Consensus 79 vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~ 110 (171)
T d1cf2o1 79 ADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG 110 (171)
T ss_dssp CSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred CCEEEEccCCCCCHHHHHHHHHcCCCEEEECC
Confidence 99999999999999999999999987777544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.49 E-value=8.6e-07 Score=71.98 Aligned_cols=91 Identities=9% Similarity=0.187 Sum_probs=69.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----------CCCcccCCHHHHhcCCCCcEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----------PDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----------~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
.||+|||+|.||..++..|.+. +.+|. ++|+++++.+.+.+..... ......++..|.+.+ .|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~--aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-GQSVL-AWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD--ADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT--CSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC--CCEEE
Confidence 4799999999999999999887 67755 8999999988876653210 122446789999986 99999
Q ss_pred EcCCCcccHHHHHHHHHc---CCeEEEe
Q 018020 79 LPLPTSMHVKWAISVAQK---KKHLLME 103 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~---gk~V~~E 103 (362)
+++|...|..++.+.... +..|++-
T Consensus 78 i~v~~~~~~~~~~~i~~~l~~~~~iv~~ 105 (184)
T d1bg6a2 78 IVVPAIHHASIAANIASYISEGQLIILN 105 (184)
T ss_dssp ECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred EEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence 999999998887766544 4555543
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.45 E-value=1.7e-06 Score=69.95 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=84.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC---CCcccCCHHHHhcC-CCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP---DAKVYGSYEALLDD-KDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~~e~l~~-~~~D~V~i~~~~~ 84 (362)
|||||||+|.||..++..|.+. +++|. ++|+++++++.+.++....+ ......+.++++.. .+.+.+.+..++.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~-G~~V~-~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK-GFKVA-VFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT-TCCEE-EECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCS
T ss_pred CEEEEEeehHHHHHHHHHHHHC-CCeEE-EEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCc
Confidence 6899999999999999999877 67765 89999999999988875321 12334566666532 4577787777776
Q ss_pred ccHH-HHHH---HHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 85 MHVK-WAIS---VAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 85 ~h~~-~~~~---al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
.-.. .+.. .++.|+ ++++-- +.+.+..+++.+.+.+.+..+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~-iii~~s-t~~~~~~~~~~~~l~~~~~~~ldap 128 (178)
T d1pgja2 80 AATDSTIEQLKKVFEKGD-ILVDTG-NAHFKDQGRRAQQLEAAGLRFLGMG 128 (178)
T ss_dssp HHHHHHHHHHHHHCCTTC-EEEECC-CCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred chhhhhhhhhhhhccccc-eecccC-ccchhHHHHHHHHHhhcceeEeccc
Confidence 5432 2222 333343 555533 5688999999999998888766543
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.43 E-value=2.8e-08 Score=78.89 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=53.6
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHHH
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWA 90 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~ 90 (362)
||+||+|.||..++..|++ +.+++.|++|+++++++++++++. .+.|.+++++. .|+|++++|+..-.+++
T Consensus 2 IgfIG~G~mg~~l~~~L~~--~~~~~~v~~R~~~~~~~l~~~~~~-----~~~~~~~~~~~--~DiVil~v~d~~i~~v~ 72 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKD--RYEIGYILSRSIDRARNLAEVYGG-----KAATLEKHPEL--NGVVFVIVPDRYIKTVA 72 (153)
T ss_dssp CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHTCC-----CCCSSCCCCC-----CEEECSCTTTHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHh--CCCEEEEEeCChhhhcchhhcccc-----cccchhhhhcc--CcEEEEeccchhhhHHH
Confidence 7999999999999988854 456667899999999999999873 45677787765 89999999987655544
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.40 E-value=7e-08 Score=73.73 Aligned_cols=98 Identities=14% Similarity=0.076 Sum_probs=74.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
++.||+|+|+|..|...+..+...++++++|.+|.++++.... -.|++ +...+++++++.. .++++++++|...+
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~--I~Gi~--V~~~~~l~~~~~~-~i~iai~~i~~~~~ 76 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRP--VRGGV--IEHVDLLPQRVPG-RIEIALLTVPREAA 76 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCE--ETTEE--EEEGGGHHHHSTT-TCCEEEECSCHHHH
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCE--ECCEE--EecHHHHHHHHhh-cccEEEEeCCHHHH
Confidence 5789999999999999998887778999999999887543211 11332 2223666666654 79999999999999
Q ss_pred HHHHHHHHHcCC-eEEEeCCCCCC
Q 018020 87 VKWAISVAQKKK-HLLMEKPMALN 109 (362)
Q Consensus 87 ~~~~~~al~~gk-~V~~EKP~~~~ 109 (362)
.+++..+.+.|. .++.=.|...+
T Consensus 77 ~~I~d~l~~~gIk~I~~f~~~~l~ 100 (126)
T d2dt5a2 77 QKAADLLVAAGIKGILNFAPVVLE 100 (126)
T ss_dssp HHHHHHHHHHTCCEEEECSSSCCC
T ss_pred HHHHHHHHHcCCCEEeecCceeec
Confidence 999999999994 45554555544
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.38 E-value=9.6e-07 Score=72.24 Aligned_cols=97 Identities=10% Similarity=0.122 Sum_probs=73.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc---------CCCCCCcccCCHHHHhcCCCCcE
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN---------NFPPDAKVYGSYEALLDDKDIDA 76 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~e~l~~~~~D~ 76 (362)
+.+.||+|||+|.||...+..+.+. +.+|. +++++++.++.+.+.. .++++..+.+|+++++++ .|+
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~-g~~V~-l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~--ad~ 80 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKK-CREVC-VWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG--AEI 80 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTT-EEEEE-EECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT--CSC
T ss_pred ceeceEEEECCCHHHHHHHHHHHHc-CCeEE-EEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC--CCE
Confidence 4567899999999999999888765 45544 8899999998886653 234556678899999996 899
Q ss_pred EEEcCCCcccHHHHHHH--------HHcCCeEE-EeCCC
Q 018020 77 VYLPLPTSMHVKWAISV--------AQKKKHLL-MEKPM 106 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~a--------l~~gk~V~-~EKP~ 106 (362)
|++++|.....+++.+. ++.+..++ +-|-+
T Consensus 81 iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGi 119 (189)
T d1n1ea2 81 ILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 119 (189)
T ss_dssp EEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred EEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCC
Confidence 99999998887777653 44555544 44544
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.34 E-value=3e-06 Score=66.98 Aligned_cols=111 Identities=14% Similarity=0.152 Sum_probs=80.3
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVKW 89 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~ 89 (362)
|||+||+|.||...+..|.+. +.. + +++++.++.+++.++.+. ...+.+.+ .+ .|+++++.|+......
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~-g~~-~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~--~~~~i~~~~~~~~v~~ 70 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR-FPT-L-VWNRTFEKALRHQEEFGS-----EAVPLERV-AE--ARVIFTCLPTTREVYE 70 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT-SCE-E-EECSSTHHHHHHHHHHCC-----EECCGGGG-GG--CSEEEECCSSHHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhC-CCE-E-EEeCCHHHHHHHHHHcCC-----cccccccc-cc--eeEEEecccchhhhhh
Confidence 799999999999999999865 444 3 567777888888887763 23344443 33 7999999998876555
Q ss_pred HHHHHHcC---CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeee
Q 018020 90 AISVAQKK---KHLLMEKPMALNVAEFDVILNACEENGVQLMDGTM 132 (362)
Q Consensus 90 ~~~al~~g---k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~ 132 (362)
....+..+ ..++++- -+.+++.++++.+.+++.|+.+..+-.
T Consensus 71 ~~~~l~~~~~~~~~iid~-sT~~p~~~~~~~~~~~~~gi~~ldapV 115 (156)
T d2cvza2 71 VAEALYPYLREGTYWVDA-TSGEPEASRRLAERLREKGVTYLDAPV 115 (156)
T ss_dssp HHHHHTTTCCTTEEEEEC-SCCCHHHHHHHHHHHHTTTEEEEECCE
T ss_pred hhcccccccccccccccc-ccCCHHHHHHHHHHHHHcCCeEEeccc
Confidence 55444332 3466663 377899999999999999988775533
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.33 E-value=1.2e-06 Score=69.53 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=73.9
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc--
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS-- 84 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~-- 84 (362)
+..||.|||+|.||...+..|... ++.-+-|+.|+.++++.++++++.. +..++++.+.+.. .|+|+.+|+..
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~-g~~~i~v~nRt~~ka~~l~~~~~~~--~~~~~~~~~~l~~--~Divi~atss~~~ 97 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDLGGE--AVRFDELVDHLAR--SDVVVSATAAPHP 97 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHHTCE--ECCGGGHHHHHHT--CSEEEECCSSSSC
T ss_pred ccCeEEEECCCHHHHHHHHHHHhc-CCcEEEEEcCcHHHHHHHHHhhhcc--cccchhHHHHhcc--CCEEEEecCCCCc
Confidence 457899999999999999998876 5655669999999999999999853 3457777777775 99999999865
Q ss_pred -ccHHHHHHHHHc---CCe-EEEe
Q 018020 85 -MHVKWAISVAQK---KKH-LLME 103 (362)
Q Consensus 85 -~h~~~~~~al~~---gk~-V~~E 103 (362)
.+.+.+..+++. +++ ++++
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiD 121 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIID 121 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred cccHhhhHHHHHhcccCCCeEEEe
Confidence 578888888864 344 6776
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=98.26 E-value=2.3e-06 Score=68.64 Aligned_cols=89 Identities=11% Similarity=0.045 Sum_probs=63.4
Q ss_pred EEEEEeccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 10 RFGIIGAADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
||+|||+|.||...+..|++.. ..+|. ++|++++..+...+ .+.. ....++.++... .+.|+|++++|+....+
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~-~~D~~~~~~~~a~~-~~~~--~~~~~~~~~~~~-~~~dlIila~p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIY-GYDINPESISKAVD-LGII--DEGTTSIAKVED-FSPDFVMLSSPVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEE-EECSCHHHHHHHHH-TTSC--SEEESCGGGGGG-TCCSEEEECSCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEE-EEECChHHHHHHHH-hhcc--hhhhhhhhhhhc-cccccccccCCchhhhh
Confidence 6999999999999999998763 45655 67999987776554 4431 134566655444 36999999999988777
Q ss_pred HHHHHHHcC--CeEEEe
Q 018020 89 WAISVAQKK--KHLLME 103 (362)
Q Consensus 89 ~~~~al~~g--k~V~~E 103 (362)
++......- ..++++
T Consensus 78 vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTD 94 (171)
T ss_dssp HHHHHHHHSCTTCEEEE
T ss_pred hhhhhhccccccccccc
Confidence 776654432 356665
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=98.19 E-value=1.9e-06 Score=65.53 Aligned_cols=90 Identities=13% Similarity=0.139 Sum_probs=71.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
|||+|+|+ |.||+.....+.+ .+.++++..|++.. +.+ .++|+|+-.|.|..-.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~-~~~~l~~~id~~~~----------------------~~~--~~~DVvIDFS~p~~~~ 55 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSE-KGHELVLKVDVNGV----------------------EEL--DSPDVVIDFSSPEALP 55 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH-TTCEEEEEEETTEE----------------------EEC--SCCSEEEECSCGGGHH
T ss_pred CEEEEECCCCHHHHHHHHHHhc-CCCeEEEEECCCcH----------------------HHh--ccCCEEEEecCHHHHH
Confidence 68999996 9999988777655 47899988875321 112 2489999999999999
Q ss_pred HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 88 KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 88 ~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+.+..|+++|+++++-.- +.+.++.++|.+++++..
T Consensus 56 ~~l~~~~~~~~p~ViGTT-G~~~~~~~~i~~~ak~~p 91 (128)
T d1vm6a3 56 KTVDLCKKYRAGLVLGTT-ALKEEHLQMLRELSKEVP 91 (128)
T ss_dssp HHHHHHHHHTCEEEECCC-SCCHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhcCCCEEEEcC-CCCHHHHHHHHHHHhhCC
Confidence 999999999999998544 457888888888876543
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=98.13 E-value=1.1e-06 Score=71.49 Aligned_cols=96 Identities=16% Similarity=0.207 Sum_probs=64.4
Q ss_pred CCceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-C-CCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 5 SQAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-F-PPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 5 ~~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~-~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
++++|||||||+ |..|..+++.|.+||.++++.++.++. ..+.+.+.+. . ..........++... .++|+|+.++
T Consensus 2 s~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~-aG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dvvf~al 79 (183)
T d2cvoa1 2 SGEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRK-AGEQFGSVFPHLITQDLPNLVAVKDADF-SNVDAVFCCL 79 (183)
T ss_dssp CSSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTT-TTSCHHHHCGGGTTSCCCCCBCGGGCCG-GGCSEEEECC
T ss_pred CCCccEEEEECcccHHHHHHHHHHHhCCCceEEEEecccc-CCCccccccccccccccccchhhhhhhh-cccceeeecc
Confidence 357999999997 888999999999999999999886543 2333333221 0 000112222222221 3599999999
Q ss_pred CCcccHHHHHHHHHcCCeEEE
Q 018020 82 PTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~ 102 (362)
|+..-.+++....+.++.|..
T Consensus 80 p~~~s~~~~~~l~~~~~~v~~ 100 (183)
T d2cvoa1 80 PHGTTQEIIKGLPQELKIVDL 100 (183)
T ss_dssp SSSHHHHHHHTSCSSCEEEEC
T ss_pred ccchHHHHHHHHHhcCccccc
Confidence 999999999877666655544
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=98.07 E-value=5.9e-06 Score=60.56 Aligned_cols=113 Identities=10% Similarity=0.111 Sum_probs=90.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-||.+-|. |..|..|.+.+++- +.++||.+.+... -+ ...|+| +|++.+|.++..++|+-+|..|+..
T Consensus 5 k~trVlvQGiTG~~G~~ht~~m~~y-GT~vVaGVtPgkg-G~---~~~giP----Vf~sV~eAv~~~~~~~SvIfVPp~~ 75 (119)
T d2nu7a1 5 KNTKVICQGFTGSQGTFHSEQAIAY-GTKMVGGVTPGKG-GT---THLGLP----VFNTVREAVAATGATASVIYVPAPF 75 (119)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCT-TE---EETTEE----EESSHHHHHHHHCCCEEEECCCGGG
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHh-CCceEEEEccCCC-Cc---ccCCCc----hhhHHHHHHHHhCCCeEEEeccHHH
Confidence 4678999996 99999999998876 7889988877432 11 123554 9999999999889999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
-..-+.+|+++|...++==.=.....+..++.+.+++++..+.
T Consensus 76 a~dA~~EAi~agI~~iV~ITEgIP~~D~~~i~~~~~~~~~~li 118 (119)
T d2nu7a1 76 CKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMI 118 (119)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence 9999999999996544322224578899999999999988763
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=98.02 E-value=3.5e-06 Score=68.20 Aligned_cols=92 Identities=13% Similarity=0.174 Sum_probs=63.7
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH--HHHHHHHHHc----CCCC-CCcccCCHHHHhcCCCCcEEEE
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL--EKATNFAKAN----NFPP-DAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~--~~~~~~~~~~----~~~~-~~~~~~~~~e~l~~~~~D~V~i 79 (362)
||||+|||+ |..|...++.|.+||.+++..++.... ...+.+...+ +... ......+.+... .++|+|+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dvvf~ 78 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFS--ADVDVVFL 78 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTC--TTCCEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhh--cccceeec
Confidence 489999995 889999999999999999999876432 1122232222 1110 001122223333 36999999
Q ss_pred cCCCcccHHHHHHHHHcCCeEE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~ 101 (362)
++|+..-.+++..+++.|..|+
T Consensus 79 alp~~~s~~~~~~~~~~~~~vI 100 (179)
T d2g17a1 79 ATAHEVSHDLAPQFLQAGCVVF 100 (179)
T ss_dssp CSCHHHHHHHHHHHHHTTCEEE
T ss_pred cccchhHHHHhhhhhhcCceee
Confidence 9999999999999999987775
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.97 E-value=3.2e-05 Score=63.62 Aligned_cols=72 Identities=11% Similarity=0.105 Sum_probs=53.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC---------------CCCCCcccCCHHHHhcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN---------------FPPDAKVYGSYEALLDDKD 73 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~e~l~~~~ 73 (362)
|||+|||+|+.|..++-.+.+. +.+|+ ++|.++++.+.+.+..- ........+|+++.+++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~-g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~-- 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR-GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLD-- 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHT--
T ss_pred CEEEEECCCHhHHHHHHHHHhC-CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhh--
Confidence 6899999999999999888776 67866 78999988776642100 00122467788888875
Q ss_pred CcEEEEcCCCc
Q 018020 74 IDAVYLPLPTS 84 (362)
Q Consensus 74 ~D~V~i~~~~~ 84 (362)
.|+++||+|++
T Consensus 77 ~d~i~i~VpTP 87 (202)
T d1mv8a2 77 SDVSFICVGTP 87 (202)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEEecCcc
Confidence 88888888775
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=97.97 E-value=1.2e-05 Score=59.14 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=90.4
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+.-||.+-|. |..|..|.+...+- +.++++-+.+... -+ .-.|+ .+|++.+|.++..++|+-+|..|+..
T Consensus 6 k~trVivQGiTG~~G~~ht~~m~~y-GT~iVaGVtPgkg-G~---~~~gi----PVf~tV~eAv~~~~~d~SvIfVPp~~ 76 (121)
T d1oi7a1 6 RETRVLVQGITGREGQFHTKQMLTY-GTKIVAGVTPGKG-GM---EVLGV----PVYDTVKEAVAHHEVDASIIFVPAPA 76 (121)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCT-TC---EETTE----EEESSHHHHHHHSCCSEEEECCCHHH
T ss_pred CCCcEEEEcCCCcHHHHHHHHHHHh-CCceEeeeecCCC-Cc---EEECC----chHhhHHHHHHhcCCeEEEEeeCHHH
Confidence 4568999996 99999999988877 7888988887542 11 11245 49999999998889999999999999
Q ss_pred cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 86 HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
-..-+++|+++|...++==.=...+.+..++.+.+++++..+.
T Consensus 77 a~dAi~EAi~agI~liv~ITEgVPv~Dm~~i~~~~~~~~~~li 119 (121)
T d1oi7a1 77 AADAALEAAHAGIPLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (121)
T ss_dssp HHHHHHHHHHTTCSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhCCCcEEEEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence 9999999999996654322224578899999999999997764
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=1.7e-05 Score=60.23 Aligned_cols=109 Identities=16% Similarity=0.253 Sum_probs=78.5
Q ss_pred ceeEEEEEec----cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 7 AAIRFGIIGA----ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~----G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
.+-.|+|||+ +..|...++.|+.....+|..| .+..+ +-.| .++|.|++|+-. .+|+|+|++|
T Consensus 7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pV-nP~~~------~i~G----~~~y~sl~dlp~--~vDlvvi~vp 73 (129)
T d2csua1 7 NPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPV-NIKEE------EVQG----VKAYKSVKDIPD--EIDLAIIVVP 73 (129)
T ss_dssp SCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEE-CSSCS------EETT----EECBSSTTSCSS--CCSEEEECSC
T ss_pred CCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEe-ccCcc------ccCC----eEeecchhhcCC--CCceEEEecC
Confidence 3568999998 5578888888876544565544 44321 1124 479999999965 4999999999
Q ss_pred CcccHHHHHHHHHcC-CeEEEeCC-CCCC----HHHHHHHHHHHHHcCCEEE
Q 018020 83 TSMHVKWAISVAQKK-KHLLMEKP-MALN----VAEFDVILNACEENGVQLM 128 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~EKP-~~~~----~~~~~~l~~~a~~~~~~~~ 128 (362)
+..-.+++.+|.+.| +.+++-.. ++.+ .+..++|.+.|+++|+.+.
T Consensus 74 ~~~~~~~~~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~ 125 (129)
T d2csua1 74 KRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRII 125 (129)
T ss_dssp HHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred hHHhHHHHHHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCCEEe
Confidence 999999999999999 66666332 2222 2334578889999998764
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.90 E-value=2.8e-05 Score=57.77 Aligned_cols=100 Identities=19% Similarity=0.312 Sum_probs=76.4
Q ss_pred EEEEEecc----HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 10 RFGIIGAA----DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 10 ~v~iiG~G----~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
+|+|||+. ..|...++.|++. +++|..| .+..+ +-.| .++|.|+.++-+. +|+|++++|+..
T Consensus 3 sIAVvGaS~~~~k~g~~v~~~L~~~-g~~V~pV-nP~~~------~i~G----~~~y~sl~~lp~~--~D~vvi~vp~~~ 68 (116)
T d1y81a1 3 KIALVGASKNPAKYGNIILKDLLSK-GFEVLPV-NPNYD------EIEG----LKCYRSVRELPKD--VDVIVFVVPPKV 68 (116)
T ss_dssp EEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEE-CTTCS------EETT----EECBSSGGGSCTT--CCEEEECSCHHH
T ss_pred EEEEEcccCCCCCcHHHHHHHHHHC-CCEEEEE-ccccc------cccC----ccccccchhcccc--ceEEEEEeCHHH
Confidence 58999974 4688889999887 6786654 34321 1124 4699999998774 999999999999
Q ss_pred cHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 86 HVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 86 h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
-.+++.+|++.| |.++++ |.+.+ +++.+.++++|+.+.
T Consensus 69 ~~~~l~~~~~~g~k~v~~~-~g~~~----~~~~~~a~~~gi~vi 107 (116)
T d1y81a1 69 GLQVAKEAVEAGFKKLWFQ-PGAES----EEIRRFLEKAGVEYS 107 (116)
T ss_dssp HHHHHHHHHHTTCCEEEEC-TTSCC----HHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHhcCCceEEec-cchhh----HHHHHHHHHcCCEEE
Confidence 999999999999 777776 54443 356788999998764
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=97.89 E-value=9.6e-05 Score=57.20 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=74.0
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCC-cEEEEEE-cCCHHHHHHHHHHcCCC-------------------CCCcccCCH
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPN-AVLSAVA-SRSLEKATNFAKANNFP-------------------PDAKVYGSY 65 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~-d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~ 65 (362)
|-||+|+|+ |++|...+..++++|+ ++|+++. .++.+.+.+.+++|+.. ....++...
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~ 81 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA 81 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence 578999995 9999999999999875 9999865 56667777777777532 112334344
Q ss_pred HHH--hcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEe
Q 018020 66 EAL--LDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLME 103 (362)
Q Consensus 66 ~e~--l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~E 103 (362)
+.+ +...++|.|+.+..-..-...+..|+++||.|.+-
T Consensus 82 ~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA 121 (150)
T d1r0ka2 82 DALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA 121 (150)
T ss_dssp HHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred cchheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence 443 34467999999999999999999999999998863
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=0.0001 Score=57.07 Aligned_cols=114 Identities=10% Similarity=0.095 Sum_probs=82.1
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCC-cEEEEEE-cCCHHHHHHHHHHcCCC---------------------CCCccc---
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPN-AVLSAVA-SRSLEKATNFAKANNFP---------------------PDAKVY--- 62 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~-~~vv~v~-d~~~~~~~~~~~~~~~~---------------------~~~~~~--- 62 (362)
||+|+|. |++|..-+..++++|+ ++|+++. ..+.+.+.+.+.+|... .++.++
T Consensus 3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g~ 82 (151)
T d1q0qa2 3 QLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQ 82 (151)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEESH
T ss_pred eEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccCh
Confidence 6999995 9999999999999974 8988865 56667777777777521 112222
Q ss_pred CCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Q 018020 63 GSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV 125 (362)
Q Consensus 63 ~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~ 125 (362)
+++.+++...++|.|+.+..-..-.+....|+++||.|.+--- .++--+=.++..++++|.
T Consensus 83 ~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLANK--EslV~aG~i~~~~~k~~~ 143 (151)
T d1q0qa2 83 QAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLANK--DMRTPIAHTMAWPNRVNS 143 (151)
T ss_dssp HHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEECCH--CTHHHHHHHHHTTSCCCC
T ss_pred HHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEEcc--HHHHhHHHHHHHHHHhCC
Confidence 2344566777899999999999999999999999999886322 133333346666655553
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.84 E-value=1.6e-05 Score=64.16 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=59.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcCCC--------CCCcccCCHHHHhcCCCCcEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANNFP--------PDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~~~--------~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
|||+|||+|.||...+..|.+. +.+|. ++.| +++..+.+.+....+ +.....+|+++.+++ .|+|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~-g~~V~-l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--ad~Ii 76 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN-GNEVR-IWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN--AEVVL 76 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH-CCEEE-EECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT--CSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEE-EEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhc--cchhh
Confidence 7899999999999999888755 45544 6665 455566654432111 112346788899886 89999
Q ss_pred EcCCCcccHHHHHHHHH
Q 018020 79 LPLPTSMHVKWAISVAQ 95 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~ 95 (362)
+++|+....+.+.+...
T Consensus 77 ~avps~~~~~~~~~l~~ 93 (180)
T d1txga2 77 LGVSTDGVLPVMSRILP 93 (180)
T ss_dssp ECSCGGGHHHHHHHHTT
T ss_pred cccchhhhHHHHHhhcc
Confidence 99999888888777554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.83 E-value=3.7e-05 Score=58.53 Aligned_cols=109 Identities=9% Similarity=0.031 Sum_probs=71.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc--CCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD--DKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~--~~~~D~V~i~~~~ 83 (362)
|||.|+|+|.+|...++.|.+. +.+++ +.|.++++.+.++++++.. .++ .+.+-+-+ -.+.|+++.+|++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~-g~~v~-vid~d~~~~~~~~~~~~~~---vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~ 75 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK-GHDIV-LIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGK 75 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCcc-eecCChhhhhhhhhhhhhh---hccCcccchhhhhhcChhhhhhhcccCCc
Confidence 6899999999999999999877 67766 7799999999998887753 233 23333322 2468999999998
Q ss_pred cccHHHHHHH-HHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 84 SMHVKWAISV-AQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 84 ~~h~~~~~~a-l~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
...--++... -+.| +++++ ...+.+.. +..++.|+...+
T Consensus 76 d~~N~~~~~~~k~~~~~~iI~---~~~~~~~~----~~l~~~G~d~vi 116 (132)
T d1lssa_ 76 EEVNLMSSLLAKSYGINKTIA---RISEIEYK----DVFERLGVDVVV 116 (132)
T ss_dssp HHHHHHHHHHHHHTTCCCEEE---ECSSTTHH----HHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHHcCCceEEE---EecCHHHH----HHHHHCCCCEEE
Confidence 7554333332 2445 44554 23344333 355667775443
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.77 E-value=9.8e-06 Score=64.67 Aligned_cols=115 Identities=11% Similarity=0.178 Sum_probs=78.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-||.|||+|..|+..+..|.+. ++.-+.|++|+.++++.+++.++.. ...+ +...+.|+|+.+||-....
T Consensus 17 ~~~vlIlGaGGaarai~~aL~~~-g~~~I~I~nR~~~ka~~L~~~~~~~----~~~~----~~~~~~DliINaTpiGm~~ 87 (167)
T d1npya1 17 NAKVIVHGSGGMAKAVVAAFKNS-GFEKLKIYARNVKTGQYLAALYGYA----YINS----LENQQADILVNVTSIGMKG 87 (167)
T ss_dssp TSCEEEECSSTTHHHHHHHHHHT-TCCCEEEECSCHHHHHHHHHHHTCE----EESC----CTTCCCSEEEECSSTTCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHC-CCCEEEEecccHHHHHHHHHhhhhh----hhhc----ccccchhhheeccccCCcc
Confidence 45899999999999998888877 5544568999999999999998752 2222 2235799999999954321
Q ss_pred -------HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeeccc
Q 018020 88 -------KWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVH 135 (362)
Q Consensus 88 -------~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~ 135 (362)
.+-...++.+. +++| +..++.+ -.+++.|++.|....-|.....
T Consensus 88 ~~~~~~l~~~~~~~~~~~-~v~D--~vY~P~~-T~ll~~A~~~G~~~i~Gl~Mli 138 (167)
T d1npya1 88 GKEEMDLAFPKAFIDNAS-VAFD--VVAMPVE-TPFIRYAQARGKQTISGAAVIV 138 (167)
T ss_dssp STTTTSCSSCHHHHHHCS-EEEE--CCCSSSS-CHHHHHHHHTTCEEECHHHHHH
T ss_pred ccccccccccHhhcCCcc-eEEE--EeeccCC-CHHHHHHHHCCCeEEECHHHHH
Confidence 11233455554 4555 3333333 2467888999998877755444
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.72 E-value=6.1e-05 Score=57.79 Aligned_cols=102 Identities=17% Similarity=0.194 Sum_probs=76.4
Q ss_pred eEEEEEecc----HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAA----DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G----~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-+|+|||+. ..|...+..+++. ++++..| .+... +-.|. .+|.++.++-.. +|+|++++|+.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~-g~~v~pV-nP~~~------~i~G~----~~~~sl~dlp~~--iD~v~i~vp~~ 85 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH-GYDVYPV-NPKYE------EVLGR----KCYPSVLDIPDK--IEVVDLFVKPK 85 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEE-CTTCS------EETTE----ECBSSGGGCSSC--CSEEEECSCHH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC-CCEEEEE-CCccc------ccCCC----cccccccccCcc--ceEEEEEeCHH
Confidence 479999985 4688888888877 6786644 33311 12343 689999998765 99999999999
Q ss_pred ccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 85 MHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 85 ~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.-.+++.+|++.| |.|++ -|-+.+. ++.+.++++|+.+.-
T Consensus 86 ~~~~~~~e~~~~g~k~v~~-~~G~~~e----e~~~~a~~~gi~vig 126 (139)
T d2d59a1 86 LTMEYVEQAIKKGAKVVWF-QYNTYNR----EASKKADEAGLIIVA 126 (139)
T ss_dssp HHHHHHHHHHHHTCSEEEE-CTTCCCH----HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHhCCCEEEE-eccccCH----HHHHHHHHCCCEEEc
Confidence 9999999999999 55665 4555553 456788899987654
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=97.71 E-value=2.8e-05 Score=62.26 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=57.0
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
||||||||+ |..|...++.|.+||.++++.++.++.. .+.+.+.+- .........+.+++.+ ++|+|+.++|+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~a-G~~i~~~~p~~~~~~~~~~~~~~~~~~--~~dvvf~a~p~~ 77 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-GKKLEEIFPSTLENSILSEFDPEKVSK--NCDVLFTALPAG 77 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-TSBHHHHCGGGCCCCBCBCCCHHHHHH--HCSEEEECCSTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccC-CCcccccCchhhccccccccCHhHhcc--ccceEEEccccH
Confidence 489999997 8889999999999999999999876432 233332220 0011122456666665 499999999998
Q ss_pred ccHHHHHH
Q 018020 85 MHVKWAIS 92 (362)
Q Consensus 85 ~h~~~~~~ 92 (362)
.-.+++.+
T Consensus 78 ~s~~~~~~ 85 (176)
T d1vkna1 78 ASYDLVRE 85 (176)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 77666643
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.71 E-value=0.00012 Score=56.67 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=50.3
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-----CCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-----FPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+++||+|||+|++|...+..+...+-+.-+.++|+++++++..+.++. ..+......|++++ . +.|+|+++.
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-~--~adivvita 80 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-K--DADLVVITA 80 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-T--TCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh-c--cccEEEEec
Confidence 578999999999999887777655433335589999988776554321 11222334677664 3 589999986
Q ss_pred CCcc
Q 018020 82 PTSM 85 (362)
Q Consensus 82 ~~~~ 85 (362)
....
T Consensus 81 g~~~ 84 (146)
T d1ez4a1 81 GAPQ 84 (146)
T ss_dssp CC--
T ss_pred cccc
Confidence 5543
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.67 E-value=8.4e-06 Score=63.30 Aligned_cols=89 Identities=11% Similarity=0.150 Sum_probs=61.8
Q ss_pred ceeEEEEEec-cHHHHHHHHHHh--cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAIT--LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~--~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
++|||||||+ |..|...++.|. ++|.+++..+..++.. .+.+. +.. +. ....+.++. ...++|+|+.++|+
T Consensus 1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~-Gk~i~--~~~-~~-~~~~~~~~~-~~~~~d~vf~a~p~ 74 (144)
T d2hjsa1 1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA-GQRMG--FAE-SS-LRVGDVDSF-DFSSVGLAFFAAAA 74 (144)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT-TCEEE--ETT-EE-EECEEGGGC-CGGGCSEEEECSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC-Cccee--ecc-cc-chhccchhh-hhccceEEEecCCc
Confidence 3799999997 888999999985 6899999988765421 11110 111 11 112233222 12369999999999
Q ss_pred cccHHHHHHHHHcCCeEE
Q 018020 84 SMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~ 101 (362)
..-.+++..++++|..|+
T Consensus 75 ~~s~~~~~~~~~~g~~VI 92 (144)
T d2hjsa1 75 EVSRAHAERARAAGCSVI 92 (144)
T ss_dssp HHHHHHHHHHHHTTCEEE
T ss_pred chhhhhccccccCCceEE
Confidence 999999999999998776
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=7.5e-05 Score=59.47 Aligned_cols=130 Identities=10% Similarity=-0.010 Sum_probs=87.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc--cCCHHHHhc------CCCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV--YGSYEALLD------DKDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~e~l~------~~~~D~V~i~~ 81 (362)
+|+|+|+|.+|...+..++.. +..-+.++|+++++++ +++++|... +.. .++..+..+ ...+|+|+-++
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~-~a~~~Ga~~-~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLS-KAKEIGADL-VLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHH-HHHHTTCSE-EEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred EEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHH-HHHHhCCcc-cccccccccccccccccccCCCCceEEEecc
Confidence 689999999999888888877 5543457899988766 567887531 011 134443322 24689999999
Q ss_pred CCcccHHHHHHHHHcCCeEE-E---eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 82 PTSMHVKWAISVAQKKKHLL-M---EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~-~---EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
......+.+..+++.|-.+. + .+|...+... . -.+++.+.-. ++|...+.++-++| ++|+|
T Consensus 106 G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~------~-~~k~l~i~Gs--~~~~~~~~~al~li-~~gki 170 (171)
T d1pl8a2 106 GAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLH------A-AIREVDIKGV--FRYCNTWPVAISML-ASKSV 170 (171)
T ss_dssp CCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHH------H-HHTTCEEEEC--CSCSSCHHHHHHHH-HTTSC
T ss_pred CCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHH------H-HHCCcEEEEE--eCCHhHHHHHHHHH-HcCCC
Confidence 99999999999998875544 3 3444555422 2 2245665532 45666788889999 77765
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.63 E-value=4.3e-05 Score=56.68 Aligned_cols=112 Identities=6% Similarity=-0.005 Sum_probs=85.9
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.+.-||.+-|. |..|..|...+.+- +.++||.+.+... -+ .-.|+ .+|++.+|..+..++|+-+|..|+.
T Consensus 13 ~k~TrVivQGiTG~~G~~ht~~m~~Y-GT~iVaGVtPgKg-G~---~~~gi----PVf~tV~eA~~~~~~daSvIfVPp~ 83 (130)
T d1euca1 13 DKNTKVICQGFTGKQGTFHSQQALEY-GTNLVGGTTPGKG-GK---THLGL----PVFNTVKEAKEQTGATASVIYVPPP 83 (130)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECTTCT-TC---EETTE----EEESSHHHHHHHHCCCEEEECCCHH
T ss_pred cCCCeEEEEcCCCcHHHHHHHHHHHh-cCCeEEeeccCCC-Cc---cccCc----cchhhHHHHHHhcCCcEEEEecCHH
Confidence 35679999996 99999999998876 7889998877532 11 12355 4999999999888899999999999
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc-CCE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN-GVQ 126 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~-~~~ 126 (362)
.-...+.+|+++|...++==.=.....+..++.+.+.+. +..
T Consensus 84 ~a~dAi~EAi~agI~liV~ITEgIPv~Dm~~i~~~~~~~~~~~ 126 (130)
T d1euca1 84 FAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR 126 (130)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHHHHHHhCCCcE
Confidence 999999999999966543222244678888887766444 444
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.54 E-value=0.00016 Score=56.46 Aligned_cols=75 Identities=19% Similarity=0.108 Sum_probs=51.6
Q ss_pred CCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-------cCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 5 SQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA-------NNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 5 ~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
++++.||+|||+|..|...+..+...+-.+++ ++|.++++++..+.. .+........+++++.+.+ .|+|
T Consensus 4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~-L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--adiV 80 (154)
T d1pzga1 4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG--ADCV 80 (154)
T ss_dssp CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEE-EECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT--CSEE
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCCceEE-EEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC--CCeE
Confidence 35789999999999998776665544435765 899888776655443 2322222334667777775 9999
Q ss_pred EEcCC
Q 018020 78 YLPLP 82 (362)
Q Consensus 78 ~i~~~ 82 (362)
+++..
T Consensus 81 vitag 85 (154)
T d1pzga1 81 IVTAG 85 (154)
T ss_dssp EECCS
T ss_pred EEecc
Confidence 99764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.50 E-value=3.9e-05 Score=67.88 Aligned_cols=93 Identities=9% Similarity=-0.018 Sum_probs=71.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC--CCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP--DAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.-+++|||+|..+..|+.++....+.+-+-|+++++++++++++++.-.. .+...+|+++.+.. .|+|+.+|....
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~--ADIi~t~Tas~s 205 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG--VDIITTVTADKA 205 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT--CSEEEECCCCSS
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc--CCceeeccccCC
Confidence 45789999999999999988776667778899999999999988763111 24458999999996 899999887543
Q ss_pred cHHHHH-HHHHcCCeEEE
Q 018020 86 HVKWAI-SVAQKKKHLLM 102 (362)
Q Consensus 86 h~~~~~-~al~~gk~V~~ 102 (362)
..+++. ..++.|.||..
T Consensus 206 ~~Pv~~~~~l~pG~hI~a 223 (340)
T d1x7da_ 206 YATIITPDMLEPGMHLNA 223 (340)
T ss_dssp EEEEECGGGCCTTCEEEE
T ss_pred CCcccchhhcCCCCEEee
Confidence 322222 45688888875
|
| >d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00041 Score=54.33 Aligned_cols=98 Identities=18% Similarity=0.143 Sum_probs=70.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCC-------------------CCcc--cCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPP-------------------DAKV--YGSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~-------------------~~~~--~~~~ 65 (362)
+|||||=|+|.+|+..++.+.+.+++++++|=|+.. +....+ =+|.... .+.+ ..++
T Consensus 1 tikigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayL-l~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p 79 (166)
T d1gado1 1 TIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM-LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP 79 (166)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHH-HHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CeEEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhh-heecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence 489999999999999999998889999999998642 222222 2222110 0111 1344
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++ ..+.++|+|+=||--....+-+..-|++| |.|++--|.
T Consensus 80 ~~i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~ 122 (166)
T d1gado1 80 ANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS 122 (166)
T ss_dssp GGGCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred HHCCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeeccc
Confidence 554 23346999999999999999999999999 889987774
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=97.40 E-value=0.00042 Score=54.65 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=57.8
Q ss_pred ceeEEEEEeccHHHHH--HHHHHhcCCCc--EEEEEEcCCHHHHHHH-------HHHcCCCCCCcccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGAADIARK--LSRAITLAPNA--VLSAVASRSLEKATNF-------AKANNFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~--~~~~~~~~~~~--~vv~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~e~l~~~~~D 75 (362)
+.+||+|||+|+.+.. ....+...+++ .-+.++|.++++++.. ....+.+......+|..|.+++ .|
T Consensus 2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~--AD 79 (167)
T d1u8xx1 2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD--VD 79 (167)
T ss_dssp CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS--CS
T ss_pred CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC--CC
Confidence 5799999999987543 34445556553 3355999999987633 2233544344567899999986 99
Q ss_pred EEEEcCCCcccHHHHHH
Q 018020 76 AVYLPLPTSMHVKWAIS 92 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~ 92 (362)
+|+++............
T Consensus 80 ~Vvitag~~~~~g~~rd 96 (167)
T d1u8xx1 80 FVMAHIRVGKYAMRALD 96 (167)
T ss_dssp EEEECCCTTHHHHHHHH
T ss_pred EEEECCCcCCCCceeHH
Confidence 99999887766554444
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.35 E-value=0.00018 Score=57.29 Aligned_cols=121 Identities=14% Similarity=0.128 Sum_probs=69.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
.-+|.|+|+|..++..+.++.+. ..+ +-|++|+.++++.+++.++....... .+.++ ....+.|+|+.+||.....
T Consensus 18 ~k~vlIlGaGGaarai~~aL~~~-~~~-i~I~nR~~~~a~~l~~~~~~~~~~~~-~~~~~-~~~~~~diiIN~tp~g~~~ 93 (171)
T d1p77a1 18 NQHVLILGAGGATKGVLLPLLQA-QQN-IVLANRTFSKTKELAERFQPYGNIQA-VSMDS-IPLQTYDLVINATSAGLSG 93 (171)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHT-TCE-EEEEESSHHHHHHHHHHHGGGSCEEE-EEGGG-CCCSCCSEEEECCCC----
T ss_pred CCEEEEECCcHHHHHHHHHHccc-Cce-eeeccchHHHHHHHHHHHhhccccch-hhhcc-ccccccceeeecccccccc
Confidence 35799999999999887777765 356 44899999999999998852211111 12222 2345799999999976543
Q ss_pred HHH---HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEeeeccc
Q 018020 88 KWA---ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ-LMDGTMWVH 135 (362)
Q Consensus 88 ~~~---~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~-~~v~~~~r~ 135 (362)
... ...++.+..|+- +......--.+++.|++.|.. +.-|.....
T Consensus 94 ~~~~~~~~~~~~~~~~~D---~vy~~p~~T~~l~~A~~~g~~~v~~Gl~Ml~ 142 (171)
T d1p77a1 94 GTASVDAEILKLGSAFYD---MQYAKGTDTPFIALCKSLGLTNVSDGFGMLV 142 (171)
T ss_dssp ---CCCHHHHHHCSCEEE---SCCCTTSCCHHHHHHHHTTCCCEECSHHHHH
T ss_pred cccchhhhhhcccceeee---eeccCcccHHHHHHHHHcCCCcccCcHHHHH
Confidence 211 223444444432 122111112455677777763 444544443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.34 E-value=0.00016 Score=54.96 Aligned_cols=116 Identities=13% Similarity=0.210 Sum_probs=73.0
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc------CCHHHHhcCCCCcEEEEcCCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY------GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~------~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|+.|||+|.+|+..+..|.+. +.+++ ++|.++++.+.++++. .+ .++ +.++++ .-.+.|+|+++++.
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~-g~~vv-vid~d~~~~~~~~~~~-~~---~~~gd~~~~~~l~~a-~i~~a~~vi~~~~~ 74 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRM-GHEVL-AVDINEEKVNAYASYA-TH---AVIANATEENELLSL-GIRNFEYVIVAIGA 74 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-TCCCE-EEESCHHHHHHTTTTC-SE---EEECCTTCTTHHHHH-TGGGCSEEEECCCS
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCeEE-EecCcHHHHHHHHHhC-Cc---ceeeecccchhhhcc-CCccccEEEEEcCc
Confidence 589999999999999999877 56656 7899999999876543 21 122 222222 11358999999998
Q ss_pred cccHHHHHHHH-Hc-C-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHh
Q 018020 84 SMHVKWAISVA-QK-K-KHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEF 145 (362)
Q Consensus 84 ~~h~~~~~~al-~~-g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~ 145 (362)
.....++...+ +. + +.+++ .+.+.+..+.+ ++.|.... .+|.....+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~iia---r~~~~~~~~~l----~~~Gad~v------i~p~~~~a~~l 126 (134)
T d2hmva1 75 NIQASTLTTLLLKELDIPNIWV---KAQNYYHHKVL----EKIGADRI------IHPEKDMGVKI 126 (134)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEE---ECCSHHHHHHH----HHHTCSEE------ECHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHcCCCcEEe---ecccHhHHHHH----HHCCCCEE------EChHHHHHHHH
Confidence 76655544332 22 3 45665 35566655443 45566443 36665554444
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=97.34 E-value=7.2e-05 Score=57.79 Aligned_cols=89 Identities=12% Similarity=0.076 Sum_probs=58.1
Q ss_pred eEEEEEec-cHHHHHHHHHHh---cCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHH-HHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGA-ADIARKLSRAIT---LAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYE-ALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~---~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-e~l~~~~~D~V~i~~~~ 83 (362)
|||||||+ |..|+.+++.+. .+|..++..+..+... .+.- .++- .........+ +.++ ++|+|+.|+|+
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~--gk~~-~~~~-~~~~~~~~~~~~~~~--~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG--VPAP-NFGK-DAGMLHDAFDIESLK--QLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS--SBCC-CSSS-CCCBCEETTCHHHHT--TCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc--cccc-ccCC-cceeeecccchhhhc--cccEEEEecCc
Confidence 68999996 888999998765 4567898877665321 1100 0110 1111111112 2233 59999999999
Q ss_pred cccHHHHHHHHHcCCe-EEEe
Q 018020 84 SMHVKWAISVAQKKKH-LLME 103 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~-V~~E 103 (362)
..-.+++..++++|+. ++++
T Consensus 75 ~~s~~~~~~l~~~g~~~~VID 95 (147)
T d1mb4a1 75 SYTEKVYPALRQAGWKGYWID 95 (147)
T ss_dssp HHHHHHHHHHHHTTCCSEEEE
T ss_pred hHHHHHhHHHHHcCCceEEEe
Confidence 9999999999999964 4543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.31 E-value=4.9e-05 Score=60.82 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=81.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l---~~~~~D~V~i~~ 81 (362)
=+|+|+|+|.+|...+..++.. +.+.+.++|+++++.+. ++++|.. .++ +++.+-+ ....+|+|+.++
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~-g~~~v~~~~~~~~k~~~-a~~~Ga~---~~i~~~~~~~~~~i~~~t~gg~D~vid~~ 104 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVC-GASIIIAVDIVESRLEL-AKQLGAT---HVINSKTQDPVAAIKEITDGGVNFALEST 104 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHH-TCSEEEEEESCHHHHHH-HHHHTCS---EEEETTTSCHHHHHHHHTTSCEEEEEECS
T ss_pred CEEEEeCCCHHHhhhhhccccc-ccceeeeeccHHHHHHH-HHHcCCe---EEEeCCCcCHHHHHHHHcCCCCcEEEEcC
Confidence 4689999999999888888776 56667788998876664 5677753 122 2333322 224699999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEEeCC-----CCCCHHHHHHHHHHHHHcCCEEEEeeecccC--hhHHHHHHhhcCCC
Q 018020 82 PTSMHVKWAISVAQKK-KHLLMEKP-----MALNVAEFDVILNACEENGVQLMDGTMWVHN--PRTAQMKEFVSDPQ 150 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~EKP-----~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~--p~~~~~k~~i~~~g 150 (362)
......+.+.++++.+ +-+++--| +..+..+. -.+++.+.-.+...+. ..+.++-+++ ++|
T Consensus 105 G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~-------~~k~~~i~Gs~~g~~~~~~~~~~~~~l~-~~G 173 (174)
T d1f8fa2 105 GSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDL-------LLGGKTILGVVEGSGSPKKFIPELVRLY-QQG 173 (174)
T ss_dssp CCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHH-------HHTTCEEEECSGGGSCHHHHHHHHHHHH-HTT
T ss_pred CcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHH-------HHCCCEEEEEEecCCChHHHHHHHHHHH-HcC
Confidence 9988888888887665 66665332 33343332 2344555422222232 2455666666 555
|
| >d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Achromobacter xylosoxidans [TaxId: 85698]
Probab=97.30 E-value=0.001 Score=52.51 Aligned_cols=99 Identities=16% Similarity=0.148 Sum_probs=70.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhc---CCCcEEEEEEcCC-HHHHHHHHHHcCCC----C---------------CCc--cc
Q 018020 8 AIRFGIIGAADIARKLSRAITL---APNAVLSAVASRS-LEKATNFAKANNFP----P---------------DAK--VY 62 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~---~~~~~vv~v~d~~-~~~~~~~~~~~~~~----~---------------~~~--~~ 62 (362)
+|||||-|+|.+|+..++.+.. .+.++|+++-|+. .+....+- +|+.. + .+. ..
T Consensus 1 tikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLl-kyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~ 79 (173)
T d1obfo1 1 TIRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLT-RYDTAHGKFPGTVSVNGSYMVVNGDKIRVDAN 79 (173)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHH-HEETTTEECSSCEEEETTEEEETTEEEEEECC
T ss_pred CeEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhh-cccccCCCcCceEEeccceEEECCEEEEEEec
Confidence 4899999999999988887643 4679999999863 33333221 22111 0 011 12
Q ss_pred CCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 63 GSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 63 ~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
.+++++ ..+.++|+|+-||-.....+-+..-|++| |.|++--|..
T Consensus 80 ~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~ 126 (173)
T d1obfo1 80 RNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG 126 (173)
T ss_dssp SCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred CCHHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence 345555 34567999999999999999999999999 8899877754
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.29 E-value=0.00014 Score=55.48 Aligned_cols=106 Identities=13% Similarity=0.123 Sum_probs=78.2
Q ss_pred eeEEEEEecc----HHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGAA----DIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~G----~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+-.|+|||+. ..|...+..|++. ++.+. .+.+++. ... -+| ..+|.++.++-.. +|+|++++|+
T Consensus 13 pksIAVVGaS~~~~k~g~~v~~~L~~~-g~~~~-~v~~~~~-~~~---i~g----~~~~~~l~~i~~~--iD~v~v~~p~ 80 (136)
T d1iuka_ 13 AKTIAVLGAHKDPSRPAHYVPRYLREQ-GYRVL-PVNPRFQ-GEE---LFG----EEAVASLLDLKEP--VDILDVFRPP 80 (136)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHT-TCEEE-EECGGGT-TSE---ETT----EECBSSGGGCCSC--CSEEEECSCH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHhcC-CCCce-EEEeccc-cce---eec----eecccchhhccCC--CceEEEeccH
Confidence 3479999984 4677888888877 67755 4444421 111 123 4689999998664 9999999999
Q ss_pred cccHHHHHHHHHcC-CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 84 SMHVKWAISVAQKK-KHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
..-.+++.+|++.| |.++++ |-+.+ +++.+.|+++|+.+..+
T Consensus 81 ~~v~~~v~~~~~~g~k~i~~q-~G~~~----~e~~~~a~~~Gi~vV~~ 123 (136)
T d1iuka_ 81 SALMDHLPEVLALRPGLVWLQ-SGIRH----PEFEKALKEAGIPVVAD 123 (136)
T ss_dssp HHHTTTHHHHHHHCCSCEEEC-TTCCC----HHHHHHHHHTTCCEEES
T ss_pred HHHHHHHHHHHhhCCCeEEEe-cCccC----HHHHHHHHHcCCEEEcC
Confidence 99999999999999 677775 54444 35788999999987643
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=97.27 E-value=0.00017 Score=58.55 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=50.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
.+|||||+|.+|+..++.++.. ++++. ++|+..... .....+. ..+.++++++.. .|+|++++|-.
T Consensus 50 ktvgIiG~G~IG~~va~~l~~f-g~~v~-~~d~~~~~~--~~~~~~~----~~~~~l~~ll~~--sD~i~~~~plt 115 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAF-GFNVL-FYDPYLSDG--VERALGL----QRVSTLQDLLFH--SDCVTLHCGLN 115 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT-TCEEE-EECTTSCTT--HHHHHTC----EECSSHHHHHHH--CSEEEECCCCC
T ss_pred ceEEEeccccccccceeeeecc-cccee-eccCccccc--chhhhcc----ccccchhhcccc--CCEEEEeeccc
Confidence 4899999999999999999877 79977 577754321 2223343 457899999996 89999998853
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.26 E-value=0.00044 Score=54.79 Aligned_cols=75 Identities=16% Similarity=0.226 Sum_probs=56.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
.-+|.|+|+|..++..+.++.+. +++ +.|++|+.++++.+++.+.-... ....++++.. ..++|+|+.+||...+
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~-g~~-i~I~nRt~~ka~~l~~~~~~~~~-~~~~~~~~~~-~~~~dliIN~Tp~G~~ 92 (170)
T d1nyta1 18 GLRILLIGAGGASRGVLLPLLSL-DCA-VTITNRTVSRAEELAKLFAHTGS-IQALSMDELE-GHEFDLIINATSSGIS 92 (170)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCE-EEEECSSHHHHHHHHHHTGGGSS-EEECCSGGGT-TCCCSEEEECCSCGGG
T ss_pred CCEEEEECCcHHHHHHHHHhccc-ceE-EEeccchHHHHHHHHHHHhhccc-cccccccccc-ccccceeecccccCcc
Confidence 35799999999999988888887 567 66999999999999988742111 1233455543 3479999999998765
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.24 E-value=0.00034 Score=54.14 Aligned_cols=76 Identities=21% Similarity=0.187 Sum_probs=49.0
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-----CCCCCccc-CCHHHHhcCCCCcEEEE
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-----FPPDAKVY-GSYEALLDDKDIDAVYL 79 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-----~~~~~~~~-~~~~e~l~~~~~D~V~i 79 (362)
+..-||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. ....+.+. .++++ ++ +.|+|++
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l~--daDvvvi 80 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-CR--DADLVVI 80 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-TT--TCSEEEE
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH-hc--cceeEEE
Confidence 4578999999999999877776554444334489999988765554431 11223333 44443 44 4899998
Q ss_pred cCCCc
Q 018020 80 PLPTS 84 (362)
Q Consensus 80 ~~~~~ 84 (362)
+....
T Consensus 81 tag~~ 85 (148)
T d1ldna1 81 CAGAN 85 (148)
T ss_dssp CCSCC
T ss_pred ecccc
Confidence 75543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.22 E-value=0.0018 Score=50.91 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=83.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC---cccCCHHHH---hc---CCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA---KVYGSYEAL---LD---DKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~e~---l~---~~~~D~V~i 79 (362)
=+|.|+|+|.+|...+..++.. +++++ ++|+++++.+ +++++|..... ....+.++. +. -..+|+|+.
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~-Ga~vi-~v~~~~~r~~-~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid 104 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAY-GAFVV-CTARSPRRLE-VAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID 104 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHH-HHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred CEEEEEcccccchhhHhhHhhh-ccccc-ccchHHHHHH-HHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence 3689999999999888888776 68877 5788988765 45666642100 011233332 22 246899999
Q ss_pred cCCCcccHHHHHHHHHcCCeEE-E---eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCC
Q 018020 80 PLPTSMHVKWAISVAQKKKHLL-M---EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQR 151 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~-~---EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~ 151 (362)
++......+.+.++++.|-.+. + .+|+..+.... -.+.+.+. +. +.+...+..+-++| ++|+
T Consensus 105 ~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~-------~~k~i~i~-gs-~~~~~~~~~ai~li-~~Gk 170 (170)
T d1e3ja2 105 CSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNA-------CAREIDIK-SV-FRYCNDYPIALEMV-ASGR 170 (170)
T ss_dssp CSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHH-------HTTTCEEE-EC-CSCSSCHHHHHHHH-HTTS
T ss_pred cCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHH-------HHCCCEEE-EE-ECCHHHHHHHHHHH-HcCC
Confidence 9999888888888887775544 3 34555565432 23455554 32 45556778888888 6553
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.21 E-value=0.0005 Score=54.54 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=53.0
Q ss_pred eeEEEEEeccHHHHH--HHHHHhcCCC---cEEEEEEcCCHHHHHHH-------HHHcCCCCCCcccCCHHHHhcCCCCc
Q 018020 8 AIRFGIIGAADIARK--LSRAITLAPN---AVLSAVASRSLEKATNF-------AKANNFPPDAKVYGSYEALLDDKDID 75 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~--~~~~~~~~~~---~~vv~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~e~l~~~~~D 75 (362)
.|||+|||+|+.|.. ++..+...+. .||+ ++|.++++++.. ...++.+..+...+|.+|.|++ .|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d--ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVT-LMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID--AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEE-EECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEE-EEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC--CC
Confidence 489999999988753 3444444433 4655 999999887642 3345544444556899999986 99
Q ss_pred EEEEcCCCcccH
Q 018020 76 AVYLPLPTSMHV 87 (362)
Q Consensus 76 ~V~i~~~~~~h~ 87 (362)
+|+++.......
T Consensus 79 ~Vv~~~~~g~~~ 90 (171)
T d1obba1 79 FVINTAMVGGHT 90 (171)
T ss_dssp EEEECCCTTHHH
T ss_pred eEeeeccccccc
Confidence 999987665443
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.20 E-value=0.0007 Score=48.05 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=60.1
Q ss_pred CCccCCceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 1 MATESQAAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 1 m~~~~~~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
|...+.+..||=+||.|.+|.. .+..|.+. +++|. .+|... ...+.+.+ .|+. .......+.+. ++|+|+
T Consensus 1 ~~~~~~~~~~ihfiGigG~GMs~LA~~L~~~-G~~Vs-GSD~~~~~~~~~L~~-~Gi~---v~~g~~~~~i~--~~d~vV 72 (96)
T d1p3da1 1 IIPEMRRVQQIHFIGIGGAGMSGIAEILLNE-GYQIS-GSDIADGVVTQRLAQ-AGAK---IYIGHAEEHIE--GASVVV 72 (96)
T ss_dssp CCCCCTTCCEEEEETTTSTTHHHHHHHHHHH-TCEEE-EEESCCSHHHHHHHH-TTCE---EEESCCGGGGT--TCSEEE
T ss_pred CCccchhCCEEEEEEECHHHHHHHHHHHHhC-CCEEE-EEeCCCChhhhHHHH-CCCe---EEECCccccCC--CCCEEE
Confidence 3334456789999999998874 57777766 78866 467643 33455544 5764 22333334454 589998
Q ss_pred EcCCCc-ccHHHHHHHHHcCCeEE
Q 018020 79 LPLPTS-MHVKWAISVAQKKKHLL 101 (362)
Q Consensus 79 i~~~~~-~h~~~~~~al~~gk~V~ 101 (362)
+++.-. .|.+ +.+|.+.|.+|+
T Consensus 73 ~S~AI~~~npe-l~~A~~~gipii 95 (96)
T d1p3da1 73 VSSAIKDDNPE-LVTSKQKRIPVI 95 (96)
T ss_dssp ECTTSCTTCHH-HHHHHHTTCCEE
T ss_pred ECCCcCCCCHH-HHHHHHcCCCEE
Confidence 876644 4555 667999999886
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.00088 Score=46.71 Aligned_cols=85 Identities=8% Similarity=0.037 Sum_probs=59.3
Q ss_pred eEEEEEeccHHHH-HHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCC-HHHHhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGAADIAR-KLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGS-YEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~G~~g~-~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~-~~e~l~~~~~D~V~i~~~~~~h 86 (362)
|||=+||.|.+|. ..+..+++. ++.|. .+|+.+......-++.|++ ++.. -.+-+. ++|+|++++--...
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~-G~~Vs-GSD~~~~~~t~~L~~~Gi~----i~~gh~~~~i~--~~d~vV~SsAI~~~ 73 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN-GNDVY-GSNIEETERTAYLRKLGIP----IFVPHSADNWY--DPDLVIKTPAVRDD 73 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEE-EECSSCCHHHHHHHHTTCC----EESSCCTTSCC--CCSEEEECTTCCTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhC-CCeEE-EEeCCCChhHHHHHHCCCe----EEeeecccccC--CCCEEEEecCcCCC
Confidence 6899999999888 467777777 78766 6787653333334666764 4322 222233 58999888776666
Q ss_pred HHHHHHHHHcCCeEE
Q 018020 87 VKWAISVAQKKKHLL 101 (362)
Q Consensus 87 ~~~~~~al~~gk~V~ 101 (362)
-+.+.+|.+.|.+|+
T Consensus 74 npel~~A~~~gIpv~ 88 (89)
T d1j6ua1 74 NPEIVRARMERVPIE 88 (89)
T ss_dssp CHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHcCCCcc
Confidence 666899999999987
|
| >d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Human(Homo sapiens), liver isoform [TaxId: 9606]
Probab=97.19 E-value=0.0011 Score=52.05 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=71.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHH---cCCCC---------------CCcc--cCCH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKA---NNFPP---------------DAKV--YGSY 65 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~---~~~~~---------------~~~~--~~~~ 65 (362)
++||||=|+|.+|+..++.+...++++++++-|+ +.+....+-+- +|.-+ .+.+ ..++
T Consensus 1 kikIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p 80 (169)
T d1u8fo1 1 KVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP 80 (169)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred CcEEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence 5899999999999998888877789999999996 45555544331 12110 0111 2344
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++ .++.++|+|+=||-...-.+-+..-+++| |.|++--|.
T Consensus 81 ~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~ 123 (169)
T d1u8fo1 81 SKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS 123 (169)
T ss_dssp GGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred hhCCccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc
Confidence 554 34457999999999988888888888889 789987774
|
| >d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.18 E-value=0.0013 Score=51.84 Aligned_cols=96 Identities=18% Similarity=0.076 Sum_probs=62.7
Q ss_pred eEEEEEeccHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHH--HcCCCCC--------------------Ccc--c
Q 018020 9 IRFGIIGAADIARKLSRAITL--APNAVLSAVASRSLEKATNFAK--ANNFPPD--------------------AKV--Y 62 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~--~~~~~~~--------------------~~~--~ 62 (362)
|||||-|+|.||+..++.+.. .+.+++++|-|+.. .+.++- +|+...+ +.+ .
T Consensus 1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~~--~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~ 78 (172)
T d1rm4a1 1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTGG--VKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSD 78 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTTC--HHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCCC--HHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecC
Confidence 799999999999988887654 44699999999853 333332 2321100 000 1
Q ss_pred CCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 63 GSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 63 ~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
.++.++ ..+.++|+|+=||--..-.+-+..-|++| |.|++--|.
T Consensus 79 ~~p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~ 124 (172)
T d1rm4a1 79 RNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG 124 (172)
T ss_dssp SCGGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC
T ss_pred CChHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccc
Confidence 122222 11235888888888888888888888888 678876664
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=97.16 E-value=0.00026 Score=57.60 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=49.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.+|||||+|.+|+..++.++.. +++|. ++|+...... ...+ ....++++++.. .|+|++++|-.
T Consensus 43 gk~vgIiG~G~IG~~va~~l~~f-g~~V~-~~d~~~~~~~---~~~~-----~~~~~l~~~l~~--sDii~~~~plt 107 (197)
T d1j4aa1 43 DQVVGVVGTGHIGQVFMQIMEGF-GAKVI-TYDIFRNPEL---EKKG-----YYVDSLDDLYKQ--ADVISLHVPDV 107 (197)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCHHH---HHTT-----CBCSCHHHHHHH--CSEEEECSCCC
T ss_pred CCeEEEecccccchhHHHhHhhh-ccccc-ccCccccccc---ccce-----eeeccccccccc--cccccccCCcc
Confidence 46899999999999999999877 78877 5777543222 1122 235799999986 89999999864
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=97.15 E-value=0.00033 Score=56.64 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=51.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-.++||||+|.+|+..++.++.. ++++. ++|+............. ..+.+++++++. .|+|++++|-.
T Consensus 47 g~tvgIiG~G~IG~~va~~l~~f-g~~v~-~~d~~~~~~~~~~~~~~-----~~~~~l~~ll~~--sD~v~l~~plt 114 (191)
T d1gdha1 47 NKTLGIYGFGSIGQALAKRAQGF-DMDID-YFDTHRASSSDEASYQA-----TFHDSLDSLLSV--SQFFSLNAPST 114 (191)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECSSCCCHHHHHHHTC-----EECSSHHHHHHH--CSEEEECCCCC
T ss_pred ccceEEeecccchHHHHHHHHhh-ccccc-cccccccccchhhcccc-----cccCCHHHHHhh--CCeEEecCCCC
Confidence 36899999999999999988876 78866 57765433333323222 457899999996 89999998864
|
| >d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain family: Glucose 6-phosphate dehydrogenase-like domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.14 E-value=0.0031 Score=47.62 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=66.3
Q ss_pred ChhHHHHHHhhcCCCCccceEEEEEEeeecCCcccccCccCcCCCCCCCcccccccchHHHHHHHHccCCCCcEEEEeec
Q 018020 136 NPRTAQMKEFVSDPQRFGQLRTMHSCFSFAGDAEFLKNDIRVKPDLDGLGALGDAGWYGIRSILWANDYELPKTVIAMHG 215 (362)
Q Consensus 136 ~p~~~~~k~~i~~~g~iG~i~~i~~~~~~~~~~~~~~~~w~~~~~~~ggg~l~~~g~h~id~~~~l~g~~~~~~V~a~~~ 215 (362)
.|.|+++|+.+ +++..++..=+...... ..+.-..++|..+|.+|.++||.|. +++-+....
T Consensus 1 AP~Y~~lk~~~------~~~~~i~~eKnR~n~~~----------P~d~r~~l~DDfIHvvDT~~~L~~~-~~~~~~~~~- 62 (140)
T d1tlta2 1 APLYGELKTQL------ATAASLRMDKHRSNSVG----------PHDLYFTLLDDYLHVVDTALWLSGG-KASLDGGTL- 62 (140)
T ss_dssp CHHHHHHTTTG------GGCCEEEEEECCSSCCC----------SSCHHHHHHHTHHHHHHHHHHHTTT-CCCEEEEEE-
T ss_pred CchHHHHHhhc------CCCcEEEEEecccCCCC----------CCcceeeehhhhhHHHHHHHHhcCC-CceeeeEEE-
Confidence 48899988665 45556665433211100 0011256899999999999999983 344455442
Q ss_pred cccCCCCeeEeeEEEEEeCCCcEEEEEEeeeeCC-ceeEEEEeccceEEEccee
Q 018020 216 PVLNEAGVILSCGASLHWDDGRVATFSCSFLANM-TMDITATGTNGSLQLHDFI 268 (362)
Q Consensus 216 ~~~~~~~~~d~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~v~G~~G~i~~~~~~ 268 (362)
.. .+.+.-.++.+.|+-. +..++-..+..+.. ...+++.++++.+.++|+.
T Consensus 63 ~~-~~~g~L~~~~v~~~~~-~~~~~~sMnR~aG~~~E~vev~~~~~~~~v~nl~ 114 (140)
T d1tlta2 63 LT-NDAGEMLFAEHHFSAG-PLQITTCMHRRAGSQRETVQAVTDGALIDITDMR 114 (140)
T ss_dssp EE-CTTCCEEEEEEEEEET-TEEEEEEEESSSSCCCEEEEEEETTEEEEEETTT
T ss_pred EE-cCCCcEEEEEEEEEEC-CEEEEEEEeccCCceeEEEEEEeCCcEEEEEehh
Confidence 11 2222334455555553 33344443433333 3479999999999999765
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.14 E-value=0.00027 Score=56.64 Aligned_cols=63 Identities=17% Similarity=0.263 Sum_probs=50.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-.+|||||+|.+|+..++.++.. +++|. ++|+++. +.. ...+++++|++.. .|+|++++|-..
T Consensus 42 gk~vgIiG~G~IG~~va~~l~~~-g~~v~-~~d~~~~-------~~~----~~~~~~l~ell~~--sDiv~~~~pl~~ 104 (181)
T d1qp8a1 42 GEKVAVLGLGEIGTRVGKILAAL-GAQVR-GFSRTPK-------EGP----WRFTNSLEEALRE--ARAAVCALPLNK 104 (181)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHT-TCEEE-EECSSCC-------CSS----SCCBSCSHHHHTT--CSEEEECCCCST
T ss_pred CceEEEeccccccccceeeeecc-ccccc-ccccccc-------ccc----eeeeechhhhhhc--cchhhccccccc
Confidence 45899999999999999999887 78866 6787642 111 2467899999996 999999998653
|
| >d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.12 E-value=0.0018 Score=50.74 Aligned_cols=97 Identities=19% Similarity=0.164 Sum_probs=72.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHHcCCCCC-------------------Ccc--cCCHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKANNFPPD-------------------AKV--YGSYE 66 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~~~~~~~-------------------~~~--~~~~~ 66 (362)
||||=|+|.+|+..++.+...+++++++|-|+ +.+.+..+-+ |....+ +.+ ..++.
T Consensus 2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlk-yDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~ 80 (166)
T d2b4ro1 2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLK-YDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS 80 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHH-CCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhh-cccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence 89999999999999999888899999999986 4565555533 321100 111 13444
Q ss_pred HH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCCC
Q 018020 67 AL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPMA 107 (362)
Q Consensus 67 e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~~ 107 (362)
++ ..+.++|+|+=||--....+.+..-|++| |.|++--|..
T Consensus 81 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k 123 (166)
T d2b4ro1 81 QIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK 123 (166)
T ss_dssp GCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred HccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccc
Confidence 44 23347999999999999999999999999 8999877754
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.11 E-value=0.0025 Score=49.05 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=63.1
Q ss_pred ceeEEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 7 AAIRFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 7 ~~~~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..-||+||| +|.||..++..|++. ++++. ++|++... +.++.++ +.|.+++++|...
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~-G~~V~-~~d~~~~~------------------~~~~~~~--~~~~v~~~~~~~~ 65 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRAS-GYPIS-ILDREDWA------------------VAESILA--NADVVIVSVPINL 65 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTT-TCCEE-EECTTCGG------------------GHHHHHT--TCSEEEECSCGGG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHc-CCCcE-eccccccc------------------ccchhhh--hccccccccchhh
Confidence 356999999 899999999999877 67755 78876432 2334444 4899999999998
Q ss_pred cHHHHHHHHHcC--CeEEEeCCCCCCHHHHHHHHH
Q 018020 86 HVKWAISVAQKK--KHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 86 h~~~~~~al~~g--k~V~~EKP~~~~~~~~~~l~~ 118 (362)
....+...+..- ..++++-- +...+-.+++.+
T Consensus 66 ~~~v~~~~~~~~~~~~iiiD~~-Svk~~~~~~~~~ 99 (152)
T d2pv7a2 66 TLETIERLKPYLTENMLLADLT-SVKREPLAKMLE 99 (152)
T ss_dssp HHHHHHHHGGGCCTTSEEEECC-SCCHHHHHHHHH
T ss_pred heeeeecccccccCCceEEEec-ccCHHHHHHHHH
Confidence 888888777653 34666642 445555555543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.09 E-value=0.00084 Score=54.33 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=48.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------------CCCcccCCHHHHhcCCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------------PDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------------~~~~~~~~~~e~l~~~~~ 74 (362)
|||+|||+|+.|...+-.+ .. +++|+ .+|.++++.+.+.+.. .| .......+....+. +.
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~-g~~V~-g~Din~~~v~~l~~g~-~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~--~~ 74 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL-QNEVT-IVDILPSKVDKINNGL-SPIQDEYIEYYLKSKQLSIKATLDSKAAYK--EA 74 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT-TSEEE-EECSCHHHHHHHHTTC-CSSCCHHHHHHHHHSCCCEEEESCHHHHHH--HC
T ss_pred CEEEEECCChhHHHHHHHH-HC-CCcEE-EEECCHHHHHHHhhcc-cccchhhHHHHhhhhhhhhhccchhhhhhh--cc
Confidence 6899999999999887666 44 78877 6899999887765321 11 01112223333333 48
Q ss_pred cEEEEcCCCcc
Q 018020 75 DAVYLPLPTSM 85 (362)
Q Consensus 75 D~V~i~~~~~~ 85 (362)
|+++|++|+..
T Consensus 75 ~ii~v~vpt~~ 85 (196)
T d1dlja2 75 ELVIIATPTNY 85 (196)
T ss_dssp SEEEECCCCCE
T ss_pred ccccccCCccc
Confidence 99999999875
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.05 E-value=0.00054 Score=53.61 Aligned_cols=85 Identities=14% Similarity=0.132 Sum_probs=60.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~ 87 (362)
..+|+|||.|+-|..|+.+|++. +++|+. .-|...+..+.+++-|+. .-+++|..+. .|+|.+.+|...|.
T Consensus 16 ~k~IaViGYGsQG~AhAlNLrDS-G~~V~V-GLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~--aDiim~L~PD~~q~ 86 (182)
T d1np3a2 16 GKKVAIIGYGSQGHAHACNLKDS-GVDVTV-GLRSGSATVAKAEAHGLK-----VADVKTAVAA--ADVVMILTPDEFQG 86 (182)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHT-TCCEEE-ECCTTCHHHHHHHHTTCE-----EECHHHHHHT--CSEEEECSCHHHHH
T ss_pred CCEEEEEeeCcHhHHHHhhhhhc-CCCEEE-EcCCCCccHHHHhhhccc-----cccHHHHhhh--cCeeeeecchHHHH
Confidence 46899999999999999999988 666653 333222333445565652 4588888886 99999999999998
Q ss_pred HHHHHH----HHcCCeEE
Q 018020 88 KWAISV----AQKKKHLL 101 (362)
Q Consensus 88 ~~~~~a----l~~gk~V~ 101 (362)
++-... |+.|+.+.
T Consensus 87 ~vy~~~I~p~lk~g~~L~ 104 (182)
T d1np3a2 87 RLYKEEIEPNLKKGATLA 104 (182)
T ss_dssp HHHHHHTGGGCCTTCEEE
T ss_pred HHHHHhhhhhcCCCcEEE
Confidence 877654 34455444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.05 E-value=4.6e-05 Score=60.24 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=51.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
|||+|||+|.||..++..|.+. +.+|. +++|+++....... .+.. .......+..+.+. ++|+|+++++...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~-G~~V~-~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~D~iii~vka~~ 75 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ-GHEVQ-GWLRVPQPYCSVNL-VETDGSIFNESLTANDPDFLA--TSDLLLVTLKAWQ 75 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCSEEEEEE-ECTTSCEEEEEEEESCHHHHH--TCSEEEECSCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHC-CCceE-EEEcCHHHhhhhcc-ccCCccccccccccchhhhhc--ccceEEEeecccc
Confidence 7999999999999999999876 67766 55666543221110 1110 00112233344444 4899999999977
Q ss_pred cHHHHHHHHH
Q 018020 86 HVKWAISVAQ 95 (362)
Q Consensus 86 h~~~~~~al~ 95 (362)
..+.+..+..
T Consensus 76 ~~~~~~~l~~ 85 (167)
T d1ks9a2 76 VSDAVKSLAS 85 (167)
T ss_dssp HHHHHHHHHT
T ss_pred hHHHHHhhcc
Confidence 6666555543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.04 E-value=0.00037 Score=55.50 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=61.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHH-Hh---cCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEA-LL---DDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e-~l---~~~~~D~V~i~~~ 82 (362)
=+|+|+|+|.+|...+..++.. +...+.++|++++|.+ +++++|.. .+.-+ +++.+ +. ....+|+|+.++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~-Ga~~Vi~~d~~~~r~~-~a~~lGa~-~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLR-GAGRIIGVGSRPICVE-AAKFYGAT-DILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTT-TCSCEEEECCCHHHHH-HHHHHTCS-EEECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CEEEEEcCCcchhhhhhhhhcc-cccccccccchhhhHH-HHHhhCcc-ccccccchhHHHHHHHHhhccCcceEEEccC
Confidence 3689999999999888888866 5544558889987655 55677742 00001 22222 22 2345999999999
Q ss_pred CcccHHHHHHHHHcCCe-EEE
Q 018020 83 TSMHVKWAISVAQKKKH-LLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~-V~~ 102 (362)
.....+.+..+++.|-. |++
T Consensus 106 ~~~~~~~a~~~~~~~G~iv~~ 126 (174)
T d1jqba2 106 GSETLSQAVKMVKPGGIISNI 126 (174)
T ss_dssp CTTHHHHHHHHEEEEEEEEEC
T ss_pred CHHHHHHHHHHHhcCCEEEEE
Confidence 88888888888877644 443
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00024 Score=54.82 Aligned_cols=126 Identities=10% Similarity=0.083 Sum_probs=72.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcC---CCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLA---PNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~---~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e~l~~~~~D~V~i~~~ 82 (362)
.||||||+ |..|+.+++.|.++ |..+++.+...... .+... ++. ...... .+.+ .++ ++|+|+.++|
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~-g~~~~--~~~-~~~~~~~~~~~~-~~~--~~DivF~a~~ 74 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG-QAAPS--FGG-TTGTLQDAFDLE-ALK--ALDIIVTCQG 74 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT-SBCCG--GGT-CCCBCEETTCHH-HHH--TCSEEEECSC
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc-ccccc--ccC-Cceeeecccchh-hhh--cCcEEEEecC
Confidence 38999997 88899999876544 56788766543211 11110 110 011111 1222 233 5999999999
Q ss_pred CcccHHHHHHHHHcCCe-EEEeC----------CCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHH
Q 018020 83 TSMHVKWAISVAQKKKH-LLMEK----------PMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKE 144 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~-V~~EK----------P~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~ 144 (362)
+..-.+++..+.++|.. +.++- |+....-- .+.++.+.++|.+=+.|-.. +|.-+.+|+
T Consensus 75 ~~~s~~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN-~~~i~~~~~~g~~~~ig~~~--~~~~~~~~~ 144 (146)
T d1t4ba1 75 GDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVN-QDVITDGLNNGIRTFVGGAA--EPLRRMLRQ 144 (146)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHH-HHHHHHHHHTTCCEEEECCC--HHHHHHHHH
T ss_pred chHHHHhhHHHHhcCCCeecccCCcccccCCCCcEECCCcC-HHHHHHHHHcCCceEEeccC--cHHHHHHHH
Confidence 99999999999999965 44433 22111112 23345566677766666433 444444443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0002 Score=50.72 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=56.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--HHHHHHHHcCCCCCCcccCC-HHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--KATNFAKANNFPPDAKVYGS-YEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--~~~~~~~~~~~~~~~~~~~~-~~e~l~~~~~D~V~i~~~~~~ 85 (362)
-||+|+|+|..|...++.|.+. +.++. ++|.+.. ..+.+ ++ +.. ..+.. .++.+. ++|.|+++.--+.
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~-g~~v~-~~D~~~~~~~~~~~-~~-~~~---~~~~~~~~~~~~--~~d~vi~SPGi~~ 76 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLAR-GVTPR-VMDTRMTPPGLDKL-PE-AVE---RHTGSLNDEWLM--AADLIVASPGIAL 76 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-TCCCE-EEESSSSCTTGGGS-CT-TSC---EEESBCCHHHHH--HCSEEEECTTSCT
T ss_pred CEEEEEeECHHHHHHHHHHHHC-CCEEE-EeeCCcCchhHHHH-hh-ccc---eeecccchhhhc--cCCEEEECCCCCC
Confidence 3799999999999999988887 67666 5565322 11111 11 111 12222 244555 4899999877777
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
+.+.+..|.++|.+|+
T Consensus 77 ~~~~~~~a~~~gi~ii 92 (93)
T d2jfga1 77 AHPSLSAAADAGIEIV 92 (93)
T ss_dssp TSHHHHHHHHTTCEEE
T ss_pred CCHHHHHHHHcCCCeE
Confidence 7889999999998875
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.97 E-value=0.00086 Score=51.20 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=45.9
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCccc-CCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVY-GSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~-~~~~e~l~~~~~D~V~i~~~~ 83 (362)
|||+|||+|..|...+..+...+-+.-+.++|.++++++..+.+. .+....... .++++ ++ +.|+|+++...
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~-~~--~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD-LK--GSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG-GT--TCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH-hc--CCCEEEEeccc
Confidence 799999999999987666554433333449999998877554442 111122333 34444 44 48999998654
|
| >d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]
Probab=96.97 E-value=0.0019 Score=50.75 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=69.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH--cCCC----C---------------C--CcccCCH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA--NNFP----P---------------D--AKVYGSY 65 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~--~~~~----~---------------~--~~~~~~~ 65 (362)
+||||=|+|.+|+..++.+.+.|++++++|=|+.. .+.++-- |+.. + . .....++
T Consensus 2 ikIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~d--~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p 79 (171)
T d3cmco1 2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTD--ANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDP 79 (171)
T ss_dssp EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSC--HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCCC--HHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCH
Confidence 79999999999999999988888999999988742 2333322 2111 0 0 1112344
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
.++ ..+.++|+|+=||-...-.+-+..-|++| |.|++--|.
T Consensus 80 ~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~ 122 (171)
T d3cmco1 80 ENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPA 122 (171)
T ss_dssp GGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred HHccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEeccc
Confidence 444 23447999999999999988888889999 788887774
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.96 E-value=0.001 Score=50.85 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=46.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+|..|...+..+...+-+.-+.++|.++++++..+.+. +....+....|+++ +. +.|+|+++.
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~-~~--~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL-LK--GSEIIVVTA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGG-GT--TCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHH-hc--cccEEEEec
Confidence 799999999999987776655544433558999998876543332 21112233456654 34 389999875
Q ss_pred CC
Q 018020 82 PT 83 (362)
Q Consensus 82 ~~ 83 (362)
..
T Consensus 78 g~ 79 (142)
T d1ojua1 78 GL 79 (142)
T ss_dssp CC
T ss_pred cc
Confidence 43
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.95 E-value=0.00068 Score=59.46 Aligned_cols=92 Identities=13% Similarity=0.020 Sum_probs=67.5
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
..-+++|||+|..+..|+..+.....++-+-|++++++++++++++... .+..+..+.++.+.. .|+|+.+|+...-
T Consensus 124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~-~~~~~~~~~~~a~~~--aDiV~taT~s~~P 200 (320)
T d1omoa_ 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCED-RGISASVQPAEEASR--CDVLVTTTPSRKP 200 (320)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHH-TTCCEEECCHHHHTS--SSEEEECCCCSSC
T ss_pred CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHh-cCCccccchhhhhcc--ccEEEEeccCccc
Confidence 3467999999999999999987655576677999999999998877531 112345566676664 8999999886432
Q ss_pred HHHHHHHHHcCCeEEE
Q 018020 87 VKWAISVAQKKKHLLM 102 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~ 102 (362)
. +-...++.|.||..
T Consensus 201 ~-~~~~~l~~G~hv~~ 215 (320)
T d1omoa_ 201 V-VKAEWVEEGTHINA 215 (320)
T ss_dssp C-BCGGGCCTTCEEEE
T ss_pred c-cchhhcCCCCeEee
Confidence 1 11245788999986
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.94 E-value=0.0013 Score=50.37 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=44.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-CC----CCCCcc--cCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-NF----PPDAKV--YGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~~----~~~~~~--~~~~~e~l~~~~~D~V~i~~ 81 (362)
|||+|||+|.+|...+..+...+-+.-+.++|.++++++..+... .. ....++ .+++++ ++ +.|+|+++.
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~-~~--dadvvvita 77 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TA--NSDIVIITA 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GT--TCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHH-hc--CCeEEEEEE
Confidence 689999999999988877766654433559999887665443221 10 011223 355544 44 489999974
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=96.94 E-value=0.0008 Score=54.17 Aligned_cols=69 Identities=20% Similarity=0.198 Sum_probs=50.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
..+|||||+|.+|+..++.++.. ++++. .+|+.... ....+..++ ..+.+++++++. .|+|++++|-..
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~f-g~~v~-~~d~~~~~-~~~~~~~~~----~~~~~l~~~l~~--sD~v~~~~plt~ 112 (188)
T d2naca1 44 AMHVGTVAAGRIGLAVLRRLAPF-DVHLH-YTDRHRLP-ESVEKELNL----TWHATREDMYPV--CDVVTLNCPLHP 112 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHGGG-TCEEE-EECSSCCC-HHHHHHHTC----EECSSHHHHGGG--CSEEEECSCCCT
T ss_pred ccceeeccccccchhhhhhhhcc-CceEE-EEeecccc-ccccccccc----cccCCHHHHHHh--ccchhhcccccc
Confidence 46999999999999999999876 67755 67764321 222233333 467899999986 999999888543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.92 E-value=0.00073 Score=54.22 Aligned_cols=66 Identities=18% Similarity=0.240 Sum_probs=49.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..++||||+|.+|+..++.++.. +++|+ ++|+....... ...++ -+.+++|+|+. .|+|++++|-.
T Consensus 44 ~k~vgiiG~G~IG~~va~~~~~f-g~~v~-~~d~~~~~~~~--~~~~~-----~~~~l~ell~~--sDiv~~~~Plt 109 (184)
T d1ygya1 44 GKTVGVVGLGRIGQLVAQRIAAF-GAYVV-AYDPYVSPARA--AQLGI-----ELLSLDDLLAR--ADFISVHLPKT 109 (184)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEE-EECTTSCHHHH--HHHTC-----EECCHHHHHHH--CSEEEECCCCS
T ss_pred ceeeeeccccchhHHHHHHhhhc-cceEE-eecCCCChhHH--hhcCc-----eeccHHHHHhh--CCEEEEcCCCC
Confidence 46899999999999999988876 78876 57776443332 22332 36799999996 99999998854
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.91 E-value=0.005 Score=46.90 Aligned_cols=74 Identities=16% Similarity=0.112 Sum_probs=47.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC----C--CCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN----F--PPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~----~--~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
|-||+|||+|..|...+..+...+-+.-+.++|.++++++..+.++. + .......+++++ ++ +.|+|+++.
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~~--daDvVVita 77 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-CR--DADMVVITA 77 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-GT--TCSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-hh--CCcEEEEec
Confidence 35899999999999887776555444334489999987765433321 1 112223456654 44 389999976
Q ss_pred CCc
Q 018020 82 PTS 84 (362)
Q Consensus 82 ~~~ 84 (362)
-..
T Consensus 78 G~~ 80 (143)
T d1llda1 78 GPR 80 (143)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.85 E-value=0.0016 Score=51.96 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=62.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc----cCCHHH----Hh---cCCCCcEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV----YGSYEA----LL---DDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~----~~~~~e----~l---~~~~~D~V 77 (362)
=+|.|+|+|.+|...+..++.. +++-|.++|+++++.+ +++++|.. .+ -++..+ +. ....+|+|
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~-~a~~lGa~---~vi~~~~~~~~~~~~~i~~~~~~~g~Dvv 104 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSL-GAENVIVIAGSPNRLK-LAEEIGAD---LTLNRRETSVEERRKAIMDITHGRGADFI 104 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TBSEEEEEESCHHHHH-HHHHTTCS---EEEETTTSCHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCccchhheeccccc-cccccccccccccccc-ccccccce---EEEeccccchHHHHHHHHHhhCCCCceEE
Confidence 4789999999999888888876 6644447788988775 55777742 11 123322 22 23458999
Q ss_pred EEcCCCcccHHHHHHHHHcCCe-EEE
Q 018020 78 YLPLPTSMHVKWAISVAQKKKH-LLM 102 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~-V~~ 102 (362)
+.++......+.+..+++.|-. |++
T Consensus 105 id~vG~~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 105 LEATGDSRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp EECSSCTTHHHHHHHHEEEEEEEEEC
T ss_pred eecCCchhHHHHHHHHhcCCCEEEEE
Confidence 9999888888888888888744 444
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.84 E-value=0.0012 Score=52.06 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=62.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhc-CCCCcEEEEcCCCcccH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLD-DKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~-~~~~D~V~i~~~~~~h~ 87 (362)
=+|.|+|+|.+|...++.++.. ++++++ .++++++. ++++++|.. .+..+.+.+.... ...+|+|+.++......
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~-Ga~~i~-~~~~~~~~-~~a~~lGad-~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 107 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAM-GAHVVA-FTTSEAKR-EAAKALGAD-EVVNSRNADEMAAHLKSFDFILNTVAAPHNL 107 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEEE-EESSGGGH-HHHHHHTCS-EEEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEeccchHHHHHHHHhhcc-cccchh-hccchhHH-HHHhccCCc-EEEECchhhHHHHhcCCCceeeeeeecchhH
Confidence 4689999999999888888876 788885 56666655 466778753 1122333333332 24699999999987777
Q ss_pred HHHHHHHHcC-CeEEE
Q 018020 88 KWAISVAQKK-KHLLM 102 (362)
Q Consensus 88 ~~~~~al~~g-k~V~~ 102 (362)
+....+++.| +-|++
T Consensus 108 ~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 108 DDFTTLLKRDGTMTLV 123 (168)
T ss_dssp HHHHTTEEEEEEEEEC
T ss_pred HHHHHHHhcCCEEEEe
Confidence 7777777776 44554
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.83 E-value=0.0017 Score=50.53 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=50.9
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-----CC-CCCcccCCHHHHhcCCCCcEEEE
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-----FP-PDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-----~~-~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
+++.||+|||+|..|...+..+...+-+.-+.++|.++++++..+.++. .+ +......+++++ . +.|+|++
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~-~--~adivvi 93 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVS-A--NSKLVII 93 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGG-T--TEEEEEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhh-c--cccEEEE
Confidence 4578999999999999988888777666545689999988775554431 00 111223566555 3 4899998
Q ss_pred cCCC
Q 018020 80 PLPT 83 (362)
Q Consensus 80 ~~~~ 83 (362)
+...
T Consensus 94 tag~ 97 (159)
T d2ldxa1 94 TAGA 97 (159)
T ss_dssp CCSC
T ss_pred eccc
Confidence 7543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0021 Score=51.77 Aligned_cols=38 Identities=5% Similarity=0.160 Sum_probs=31.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATN 48 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~ 48 (362)
-||+|||+|.||...+..+... +++++ ++|++++..++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~-G~~V~-l~D~~~~~l~~ 42 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAAT-GHTVV-LVDQTEDILAK 42 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhC-CCcEE-EEECChHHHHH
Confidence 4899999999999998888776 78866 89999876543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.82 E-value=0.0027 Score=46.35 Aligned_cols=88 Identities=18% Similarity=0.178 Sum_probs=57.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCCCcc-
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLPTSM- 85 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~~~~- 85 (362)
.-||+|||.|..|...++.+.+. +++++.+.....+....++++.++. ..-..+++ -+. +.++|+++|.+..
T Consensus 12 ~k~vlVvG~G~va~~ka~~ll~~-ga~v~v~~~~~~~~~~~~~~~~~i~---~~~~~~~~~dl~--~~~lv~~at~d~~~ 85 (113)
T d1pjqa1 12 DRDCLIVGGGDVAERKARLLLEA-GARLTVNALTFIPQFTVWANEGMLT---LVEGPFDETLLD--SCWLAIAATDDDTV 85 (113)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TBEEEEEESSCCHHHHHHHTTTSCE---EEESSCCGGGGT--TCSEEEECCSCHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCChHHHHHHhcCCce---eeccCCCHHHhC--CCcEEeecCCCHHH
Confidence 46899999999999999999888 6777755443334455555544432 11112222 233 4899999988764
Q ss_pred cHHHHHHHHHcCCeEE
Q 018020 86 HVKWAISVAQKKKHLL 101 (362)
Q Consensus 86 h~~~~~~al~~gk~V~ 101 (362)
..++...|-+.|..|=
T Consensus 86 n~~i~~~a~~~~ilVN 101 (113)
T d1pjqa1 86 NQRVSDAAESRRIFCN 101 (113)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 4566677777787764
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.81 E-value=0.0026 Score=49.72 Aligned_cols=129 Identities=11% Similarity=0.122 Sum_probs=83.4
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc--CCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD--DKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~--~~~~D~V~i~~~ 82 (362)
-+|.|+|+|.+|...+..++.. +.+++ ++++++++.+ +++++|.. .+. +++.+.+. ..+.|.+++++.
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~-g~~v~-~~~~~~~r~~-~~k~~Ga~---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 102 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAM-GLNVV-AVDIGDEKLE-LAKELGAD---LVVNPLKEDAAKFMKEKVGGVHAAVVTAV 102 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT-TCEEE-EECSCHHHHH-HHHHTTCS---EEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred CEEEEeecccchhhhhHHHhcC-CCeEe-ccCCCHHHhh-hhhhcCcc---eecccccchhhhhcccccCCCceEEeecC
Confidence 4789999999999888888766 66755 6678888765 56778753 122 24444332 246788888888
Q ss_pred CcccHHHHHHHHHcCCeEEE----eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCCCc
Q 018020 83 TSMHVKWAISVAQKKKHLLM----EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQRF 152 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~~----EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g~i 152 (362)
.....+.+..+++.|-.+.+ ..|...+.-. .. .+++.+. +...+....+..+-+++ ++|+|
T Consensus 103 ~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~------~~-~~~~~i~-gs~~~~~~~~~~~l~l~-~~Gki 167 (168)
T d1rjwa2 103 SKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFD------TV-LNGIKII-GSIVGTRKDLQEALQFA-AEGKV 167 (168)
T ss_dssp CHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHH------HH-HTTCEEE-ECCSCCHHHHHHHHHHH-HTTSC
T ss_pred CHHHHHHHHHHhccCCceEecccccCCCCCCHHH------HH-HCCcEEE-EEeeCCHHHHHHHHHHH-HhCCC
Confidence 88888889999988755443 4444444322 22 2345544 44334445677888888 66654
|
| >d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Trypanosoma cruzi [TaxId: 5693]
Probab=96.80 E-value=0.0033 Score=50.34 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=67.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC----CCcEEEEEEcC--CHHHHHHHHHHcCCCC-----CCc--------------c-
Q 018020 8 AIRFGIIGAADIARKLSRAITLA----PNAVLSAVASR--SLEKATNFAKANNFPP-----DAK--------------V- 61 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~----~~~~vv~v~d~--~~~~~~~~~~~~~~~~-----~~~--------------~- 61 (362)
+|||||=|+|.||+..++.+... +.+++++|-|+ +.+....+-+ |.... .+. .
T Consensus 2 ~ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlk-yDSvhG~~~~~v~~~~~~~~~~~~~~~i~ 80 (190)
T d1k3ta1 2 PIKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR-YDTVHGKFKYEVTTTKSSPSVAKDDTLVV 80 (190)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHH-EETTTEECSSCEEEECSSTTCSSCCEEEE
T ss_pred CeEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhh-ccccccCCCceEEEccCccccccccceEE
Confidence 48999999999999888876432 57999999987 4555554432 22100 000 0
Q ss_pred ----------cCCHHHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 62 ----------YGSYEAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 62 ----------~~~~~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
..++.++ ..+.++|+|+=||-.....+-+..-+++| |.|++--|.
T Consensus 81 ~g~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~ 137 (190)
T d1k3ta1 81 NGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA 137 (190)
T ss_dssp TTEEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred cCceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCC
Confidence 1223333 12236999999999999999999999999 888887774
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.79 E-value=0.00098 Score=53.35 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=37.5
Q ss_pred eEEEEE-eccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc
Q 018020 9 IRFGII-GAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN 53 (362)
Q Consensus 9 ~~v~ii-G~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~ 53 (362)
|||+|| |+|.||...+..|.+. +.+|+ +++|++++++.+.++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~-G~~V~-l~~R~~e~~~~l~~~i 44 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL-GHEIV-VGSRREEKAEAKAAEY 44 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT-TCEEE-EEESSHHHHHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHHH
Confidence 689999 7899999999999887 78877 7799999998887764
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.78 E-value=0.00013 Score=57.00 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=59.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcC--CCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLA--PNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSM 85 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~--~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~ 85 (362)
.||||||+ |..|...++.|.+| |..++..+++++ ...+.+.. .. +........++.. .++|+++.++|+..
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~-s~G~~~~~--~~-~~~~~~~~~~~~~--~~~d~~f~~~~~~~ 75 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASAR-SAGKSLKF--KD-QDITIEETTETAF--EGVDIALFSAGSST 75 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGG-GTTCEEEE--TT-EEEEEEECCTTTT--TTCSEEEECSCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccc-cccccccc--cC-Ccccccccchhhh--hhhhhhhhccCccc
Confidence 58999997 88899999999999 567777666532 11111100 00 1111122222222 36999999999999
Q ss_pred cHHHHHHHHHcCCeEEE
Q 018020 86 HVKWAISVAQKKKHLLM 102 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~ 102 (362)
..+++..++++|..|+-
T Consensus 76 s~~~~~~~~~~~~~VID 92 (154)
T d2gz1a1 76 SAKYAPYAVKAGVVVVD 92 (154)
T ss_dssp HHHHHHHHHHTTCEEEE
T ss_pred hhhHHhhhccccceehh
Confidence 99999999999988763
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=96.78 E-value=0.0027 Score=49.79 Aligned_cols=95 Identities=13% Similarity=0.143 Sum_probs=66.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHH--HcCCCCC---------------------CcccCCH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAK--ANNFPPD---------------------AKVYGSY 65 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~--~~~~~~~---------------------~~~~~~~ 65 (362)
|||||=|+|.+|+..++.+.. +++++++|-|+.. .+.++- +|+...+ ..-..++
T Consensus 1 ikigINGfGRIGR~~~R~l~~-~~i~iv~INd~~~--~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p 77 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHS-RGVEVALINDLTD--NKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDP 77 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSC--HHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEECCcHHHHHHHHHHhc-CCCEEEEECCCcc--hhhhhheeecccccCccccccccccceeEecceeEEEEecCCh
Confidence 689999999999988887754 4799999999753 233222 2322110 0111233
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++ ..+.++|+|+=||-.....+-+..-+++| |.|++--|.
T Consensus 78 ~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~ 120 (168)
T d2g82a1 78 KEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA 120 (168)
T ss_dssp GGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred HHCcccccCCceeEeccccccchHHhhhhhccccceeeecccc
Confidence 443 23346899999999999999999999999 888887674
|
| >d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=96.78 E-value=0.004 Score=48.73 Aligned_cols=96 Identities=20% Similarity=0.175 Sum_probs=65.7
Q ss_pred EEEEEeccHHHHHHHHHHh--cCCCcEEEEEEcCC-HHHHHHHHHHcCCC----C-C--------------Cc--ccCCH
Q 018020 10 RFGIIGAADIARKLSRAIT--LAPNAVLSAVASRS-LEKATNFAKANNFP----P-D--------------AK--VYGSY 65 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~--~~~~~~vv~v~d~~-~~~~~~~~~~~~~~----~-~--------------~~--~~~~~ 65 (362)
||||=|+|.+|+..++.+. ..+++++|+|=|+. .+....+- +|... + . +. -..++
T Consensus 2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLl-kyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p 80 (169)
T d1hdgo1 2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLL-KYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (169)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHH-HCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHH-hccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence 7999999999998888764 36689999998873 33333322 22211 0 0 11 11234
Q ss_pred HHH-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 66 EAL-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 66 ~e~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+++ ..+.++|+|+=||--....+-+..-+++| |.|++--|.
T Consensus 81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~ 123 (169)
T d1hdgo1 81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPA 123 (169)
T ss_dssp GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEeccc
Confidence 444 22236999999999999999999999998 788887774
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=96.71 E-value=0.00055 Score=55.68 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=48.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.+|+..++.++.. +++++ ++|+...... ... .-+.++++++.. .|+|++++|-.
T Consensus 45 ~ktvgIiG~G~IG~~va~~l~~f-g~~v~-~~d~~~~~~~--------~~~-~~~~~l~~l~~~--~D~v~~~~plt 108 (199)
T d1dxya1 45 QQTVGVMGTGHIGQVAIKLFKGF-GAKVI-AYDPYPMKGD--------HPD-FDYVSLEDLFKQ--SDVIDLHVPGI 108 (199)
T ss_dssp GSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCSSC--------CTT-CEECCHHHHHHH--CSEEEECCCCC
T ss_pred ceeeeeeeccccccccccccccc-ceeee-ccCCccchhh--------hcc-hhHHHHHHHHHh--cccceeeeccc
Confidence 35899999999999999999877 78877 6787543210 011 236799999986 99999998864
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.71 E-value=0.0047 Score=48.51 Aligned_cols=83 Identities=12% Similarity=0.005 Sum_probs=55.2
Q ss_pred eeEEEEEeccHHH--HHHHHHHhcCCC--cEEEEEEcCCHHH--HHHH-------HHHcCCCCCCcccCCHHHHhcCCCC
Q 018020 8 AIRFGIIGAADIA--RKLSRAITLAPN--AVLSAVASRSLEK--ATNF-------AKANNFPPDAKVYGSYEALLDDKDI 74 (362)
Q Consensus 8 ~~~v~iiG~G~~g--~~~~~~~~~~~~--~~vv~v~d~~~~~--~~~~-------~~~~~~~~~~~~~~~~~e~l~~~~~ 74 (362)
++||+|||+|+.+ ...+..+...+. ..-+.++|+++++ ++.+ ..+++.+.....++|..+.+++ .
T Consensus 1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g--a 78 (169)
T d1s6ya1 1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--A 78 (169)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT--C
T ss_pred CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC--C
Confidence 5899999999754 345555555544 2335589987743 3322 2345555444567888888886 8
Q ss_pred cEEEEcCCCcccHHHHHH
Q 018020 75 DAVYLPLPTSMHVKWAIS 92 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~ 92 (362)
|+|+++.....+......
T Consensus 79 DvVv~ta~~~~~~~~~r~ 96 (169)
T d1s6ya1 79 DFVTTQFRVGGLEARAKD 96 (169)
T ss_dssp SEEEECCCTTHHHHHHHH
T ss_pred CEEEEccccCCCCCeehh
Confidence 999999888766555544
|
| >d1h9aa1 c.2.1.3 (A:1-181,A:413-426) Glucose 6-phosphate dehydrogenase, N-terminal domain {Leuconostoc mesenteroides [TaxId: 1245]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose 6-phosphate dehydrogenase, N-terminal domain species: Leuconostoc mesenteroides [TaxId: 1245]
Probab=96.59 E-value=0.017 Score=46.30 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=39.6
Q ss_pred cEEEEcCCCcccHHHHHHHHHcCC-------eEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKKK-------HLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~gk-------~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
=+.+.++||..-..++...-++|. .|.+|||++.|++.|++|-+...+
T Consensus 112 rifYLAvpP~~F~~i~~~L~~~~l~~~~~~~RvVvEKPfG~Dl~SA~~Ln~~l~~ 166 (195)
T d1h9aa1 112 RIFYMSVAPRFFGTIAKYLKSEGLLADTGYNRLMIEKPFGTSYDTAAELQNDLEN 166 (195)
T ss_dssp EEEEECSCGGGHHHHHHHHHHTTCSCSSSCEEEEECSCSCSSHHHHHHHHHHHTT
T ss_pred eEEEEecCHHHHHHHHHHHHHhhccccCCceEEEEeCCccCCHHHHHHHHHHHHh
Confidence 388899999887777776666652 599999999999999999887765
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.00057 Score=53.93 Aligned_cols=89 Identities=12% Similarity=0.008 Sum_probs=56.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccC---CHHHHhcCCCCcEEEEcCCCc-
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYG---SYEALLDDKDIDAVYLPLPTS- 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~e~l~~~~~D~V~i~~~~~- 84 (362)
-+|.|+|+|.+|...+..++.. ++++++ +|+++++.+ .++++|... +..+. ++.+.+. ..+|+|+.++...
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~-G~~vi~-~~~~~~k~~-~a~~lGa~~-~i~~~~~~~~~~~~~-~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAM-GAETYV-ISRSSRKRE-DAMKMGADH-YIATLEEGDWGEKYF-DTFDLIVVCASSLT 103 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCEEEE-EESSSTTHH-HHHHHTCSE-EEEGGGTSCHHHHSC-SCEEEEEECCSCST
T ss_pred CEEEEECCCCcchhHHHHhhhc-cccccc-cccchhHHH-HhhccCCcE-EeeccchHHHHHhhh-cccceEEEEecCCc
Confidence 4799999999999888887766 789775 677777665 457777531 11121 2222222 3689999875543
Q ss_pred -ccHHHHHHHHHcC-CeEEE
Q 018020 85 -MHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 85 -~h~~~~~~al~~g-k~V~~ 102 (362)
...+.+..+++.| +-|++
T Consensus 104 ~~~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 104 DIDFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp TCCTTTGGGGEEEEEEEEEC
T ss_pred cchHHHHHHHhhccceEEEe
Confidence 3455666666664 55555
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.55 E-value=0.0041 Score=48.30 Aligned_cols=72 Identities=11% Similarity=0.029 Sum_probs=48.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC------CCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN------FPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+-||+|||+|.+|...+..+...+-+.-+.++|.++++++..+.++. ..+......+++++ . +.|+|+++.
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~-~--~adiVVitA 96 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT-A--NSKIVVVTA 96 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG-T--TCSEEEECC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc-c--cccEEEEec
Confidence 46999999999999988888777655556699999988766554431 01111123455443 2 489999965
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
.
T Consensus 97 g 97 (160)
T d1i0za1 97 G 97 (160)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.0054 Score=47.80 Aligned_cols=81 Identities=10% Similarity=0.010 Sum_probs=51.1
Q ss_pred eEEEEEeccHHHHHH--HHHHhcCC--CcEEEEEEcCCHHHHHHHHHH----cCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIGAADIARKL--SRAITLAP--NAVLSAVASRSLEKATNFAKA----NNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~--~~~~~~~~--~~~vv~v~d~~~~~~~~~~~~----~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|||+|||+|+.|... .-.++... ...-+.++|.++++++...+. ...+......++.++.+++ .|+|+++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~--aDvVVit 78 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD--AKYVIFQ 78 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT--CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC--CCEEEEe
Confidence 689999999876533 22233222 233355999999987754332 1222334556788888886 8999998
Q ss_pred CCCcccHHHHH
Q 018020 81 LPTSMHVKWAI 91 (362)
Q Consensus 81 ~~~~~h~~~~~ 91 (362)
.....+...-.
T Consensus 79 a~~~~~~~~~r 89 (162)
T d1up7a1 79 FRPGGLKGREN 89 (162)
T ss_dssp CCTTHHHHHHH
T ss_pred cccCCCCCcch
Confidence 77765544433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.48 E-value=0.0032 Score=49.83 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=65.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc-----C-CHHHHh---cCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY-----G-SYEALL---DDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~-----~-~~~e~l---~~~~~D~V~i 79 (362)
=+|+|+|+|.+|...+..++.. +...+.++|++++|+ ++++++|.. .++ + ...++. ....+|+|+-
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~-Ga~~Vi~~d~~~~r~-~~a~~~Ga~---~~i~~~~~~~~~~~~~~~~~~~G~d~vie 104 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIA-GASRIIAIDINGEKF-PKAKALGAT---DCLNPRELDKPVQDVITELTAGGVDYSLD 104 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCSEEEEECSCGGGH-HHHHHTTCS---EEECGGGCSSCHHHHHHHHHTSCBSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHh-CCceeeeeccchHHH-HHHHHhCCC---cccCCccchhhhhhhHhhhhcCCCcEEEE
Confidence 4689999999999999988877 666676899988764 577888854 222 1 122222 2357899999
Q ss_pred cCCCcccHHHHHHHHHc--CCeEEEeCC
Q 018020 80 PLPTSMHVKWAISVAQK--KKHLLMEKP 105 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~--gk~V~~EKP 105 (362)
++....-.+.+.++++. |+-|++=-|
T Consensus 105 ~~G~~~~~~~a~~~~~~g~G~~v~vG~~ 132 (174)
T d1e3ia2 105 CAGTAQTLKAAVDCTVLGWGSCTVVGAK 132 (174)
T ss_dssp SSCCHHHHHHHHHTBCTTTCEEEECCCS
T ss_pred ecccchHHHHHHHHhhcCCeEEEecCCC
Confidence 99988888888888765 466665433
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.43 E-value=0.0036 Score=47.67 Aligned_cols=72 Identities=11% Similarity=0.063 Sum_probs=47.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
-||+|||+|..|...+..+...+-.+++ ++|.++++++..+.++ +....+....+++++ + +.|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~-l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~-~--~advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADT-A--NSDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEE-EECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGG-T--TCSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEE-EEeeccccchhHHHHhhccccccCCCCEEEecCcHHHh-c--CCCEEEEee
Confidence 4899999999999776666544445744 7898887766544443 111122335677775 3 389999987
Q ss_pred CCc
Q 018020 82 PTS 84 (362)
Q Consensus 82 ~~~ 84 (362)
...
T Consensus 78 g~~ 80 (142)
T d1uxja1 78 GAP 80 (142)
T ss_dssp SCC
T ss_pred ecc
Confidence 544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.39 E-value=0.0037 Score=47.87 Aligned_cols=68 Identities=19% Similarity=0.196 Sum_probs=44.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
||+|||+|.+|...+..+...+-+ +++ ++|+++++++..+.++ +.+ ......+++++ + +.|+|+++.
T Consensus 3 KI~IIGaG~VG~~~a~~l~~~~~~~elv-L~Di~~~~~~g~~~Dl~~a~~~~~~~-~~~~~~d~~~l-~--~adiVVita 77 (146)
T d1hyha1 3 KIGIIGLGNVGAAVAHGLIAQGVADDYV-FIDANEAKVKADQIDFQDAMANLEAH-GNIVINDWAAL-A--DADVVISTL 77 (146)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEE-EECSSHHHHHHHHHHHHHHGGGSSSC-CEEEESCGGGG-T--TCSEEEECC
T ss_pred eEEEECcCHHHHHHHHHHHhcCCCceEE-EEecccchhhhHHHhhhccccccCCc-cceeccCHHHh-c--cccEEEEec
Confidence 799999999999877766544333 544 8999998876554432 221 11234566654 4 489999975
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
.
T Consensus 78 G 78 (146)
T d1hyha1 78 G 78 (146)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0093 Score=46.13 Aligned_cols=65 Identities=9% Similarity=0.029 Sum_probs=50.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-+++|+|+|++|+..+..++.. +++++ ++|+++-++-+.. ..|. ...+.++++.. .|+++.+|.+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~-G~~V~-v~e~dp~~al~A~-~dG~-----~v~~~~~a~~~--adivvtaTGn 89 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGF-GARVI-ITEIDPINALQAA-MEGY-----EVTTMDEACQE--GNIFVTTTGC 89 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHH-HTTC-----EECCHHHHTTT--CSEEEECSSC
T ss_pred CEEEEeccccccHHHHHHHHhC-CCeeE-eeecccchhHHhh-cCce-----Eeeehhhhhhh--ccEEEecCCC
Confidence 3689999999999999999988 78866 8999985543322 2242 35588999886 8988888876
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.36 E-value=0.0048 Score=47.39 Aligned_cols=71 Identities=11% Similarity=0.057 Sum_probs=45.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
+.||+|||+|..|...+..+...+=.+|+ ++|+++++++..+.+. +.+..+....+++++ . +.|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~-L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~-~--~advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL-A--GADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEE-EECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG-T--TCSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEE-EEeccCCcceeeecchhhhccccCCCcEEEeccccccc-C--CCcEEEEe
Confidence 57999999999998877666555435655 9999887766554432 221111112344444 3 48999987
Q ss_pred CC
Q 018020 81 LP 82 (362)
Q Consensus 81 ~~ 82 (362)
..
T Consensus 79 ag 80 (150)
T d1t2da1 79 AG 80 (150)
T ss_dssp CS
T ss_pred cc
Confidence 55
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.30 E-value=0.0026 Score=51.40 Aligned_cols=90 Identities=17% Similarity=0.167 Sum_probs=57.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-----CCcEEE-EEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLA-----PNAVLS-AVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-----~~~~vv-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
-||+|||.|+-|..|+..|++. .++.|+ |+-.-+.. .+-|++-|+...-...-+.+|..+. .|+|.+.+|
T Consensus 45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S--~~kA~~dGf~v~~~~v~~v~EAv~~--ADiVmiLlP 120 (226)
T d1qmga2 45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNS--FAEARAAGFSEENGTLGDMWETISG--SDLVLLLIS 120 (226)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSC--HHHHHHTTCCGGGTCEEEHHHHHHT--CSEEEECSC
T ss_pred CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChh--HHHHHHcCCccCCCcccCHHHHHhh--CCEEEEecc
Confidence 4799999999999999999983 245544 33322222 2223444542100113467787775 999999999
Q ss_pred CcccHHHHHH---HHHcCCeEEE
Q 018020 83 TSMHVKWAIS---VAQKKKHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~---al~~gk~V~~ 102 (362)
...|.++-.. -|+.|+.+..
T Consensus 121 De~Q~~vy~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 121 DSAQADNYEKVFSHMKPNSILGL 143 (226)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEE
T ss_pred hHHHHHHHHHHHHhcCCCceeee
Confidence 9999777654 4455665543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.28 E-value=0.0026 Score=48.51 Aligned_cols=71 Identities=25% Similarity=0.310 Sum_probs=43.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC--CC--CCCccc-CCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN--FP--PDAKVY-GSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~--~~--~~~~~~-~~~~e~l~~~~~D~V~i~~~ 82 (362)
-||+|||+|.+|...+..+...+-+.-+.++|+++++++..+.++. .+ +....+ .+++++ .+.|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~---~~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDV---KDCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGG---TTCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHh---CCCceEEEecc
Confidence 4899999999999888777666554445599999987665555432 11 111222 234433 34899999743
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0016 Score=52.39 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=47.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
..+|||||+|.+|+..++.+... ++++. ++|+..... . .....+.+++|+++. .|+|+++.|-.
T Consensus 44 ~~~vgiiG~G~IG~~va~~l~~f-g~~v~-~~d~~~~~~------~---~~~~~~~~l~ell~~--sDii~i~~plt 107 (188)
T d1sc6a1 44 GKKLGIIGYGHIGTQLGILAESL-GMYVY-FYDIENKLP------L---GNATQVQHLSDLLNM--SDVVSLHVPEN 107 (188)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSCCCC------C---TTCEECSCHHHHHHH--CSEEEECCCSS
T ss_pred ceEEEEeecccchhhhhhhcccc-cceEe-eccccccch------h---hhhhhhhhHHHHHhh--ccceeecccCC
Confidence 46899999999999999988777 78866 567643211 1 112456799999986 89999987743
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.13 E-value=0.006 Score=49.09 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=47.1
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC-----CCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP-----DAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
+|.|+|+|.+|...+..++.. +...+.++|+++++++ +++++|... +....+...++.....+|+|+-++.
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~-~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG 103 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLA-HAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 103 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHH-HHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred EEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhH-hhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence 689999999998777777766 4545557888887665 567776430 0011122334445567899998875
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.96 E-value=0.02 Score=43.52 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=42.4
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH--HHHHHHHHHc-----CCCCCCcc----cCCHHHHhcCCCCcE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL--EKATNFAKAN-----NFPPDAKV----YGSYEALLDDKDIDA 76 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~--~~~~~~~~~~-----~~~~~~~~----~~~~~e~l~~~~~D~ 76 (362)
|||+|||+ |.+|...+..+...+-+.-+.++|+++ ++++..+.+. ..+..+.. .++++ -++ +.|+
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~-~l~--~aDv 77 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR-IID--ESDV 77 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG-GGT--TCSE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH-Hhc--cceE
Confidence 68999996 999999888887765443455888765 3334333221 11112222 22443 334 4999
Q ss_pred EEEcC
Q 018020 77 VYLPL 81 (362)
Q Consensus 77 V~i~~ 81 (362)
|+|+.
T Consensus 78 VVitA 82 (145)
T d1hyea1 78 VIITS 82 (145)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99974
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.95 E-value=0.0039 Score=49.02 Aligned_cols=89 Identities=8% Similarity=0.147 Sum_probs=62.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l~---~~~~D~V~i~~ 81 (362)
=.|.|+|+|.+|...+..++.. +...+.++|+++++.+ +++++|.. .+. +++++.++ ...+|+|+.++
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~-g~~~vv~~~~~~~k~~-~~~~~ga~---~~i~~~~~~~~~~~~~~~~~g~d~vid~~ 108 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVM-TPATVIALDVKEEKLK-LAERLGAD---HVVDARRDPVKQVMELTRGRGVNVAMDFV 108 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-CCCEEEEEESSHHHHH-HHHHTTCS---EEEETTSCHHHHHHHHTTTCCEEEEEESS
T ss_pred CEEEEeCCChHHHHHHHHHHhh-cCcccccccchhHHHH-HHhhcccc---eeecCcccHHHHHHHhhCCCCceEEEEec
Confidence 3689999999999888888766 4445567889887665 45667642 122 22344443 24699999999
Q ss_pred CCcccHHHHHHHHHcC-CeEEE
Q 018020 82 PTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 82 ~~~~h~~~~~~al~~g-k~V~~ 102 (362)
......+.+..+++.| +-|++
T Consensus 109 g~~~~~~~a~~~l~~~G~iv~~ 130 (172)
T d1h2ba2 109 GSQATVDYTPYLLGRMGRLIIV 130 (172)
T ss_dssp CCHHHHHHGGGGEEEEEEEEEC
T ss_pred CcchHHHHHHHHHhCCCEEEEE
Confidence 9988888888888776 44544
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0038 Score=50.54 Aligned_cols=100 Identities=16% Similarity=0.130 Sum_probs=60.6
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
+-||.|+|+ |.+|...++.|.+. +.+|+++. |++++...... .++. -+..-.+++++.++ ++|+|+.+...
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~-R~~~~~~~~~~-~~~~~~~gD~~d~~~l~~al~--~~d~vi~~~g~ 77 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLV-RDSSRLPSEGP-RPAHVVVGDVLQAADVDKTVA--GQDAVIVLLGT 77 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-SCGGGSCSSSC-CCSEEEESCTTSHHHHHHHHT--TCSEEEECCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEE-cChhhcccccc-cccccccccccchhhHHHHhc--CCCEEEEEecc
Confidence 567999995 99999999988776 68888654 77665432211 1111 01111233444555 48999887654
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
... ..|........+.++++++++|++-+
T Consensus 78 ~~~----------------~~~~~~~~~~~~~l~~aa~~~~v~r~ 106 (205)
T d1hdoa_ 78 RND----------------LSPTTVMSEGARNIVAAMKAHGVDKV 106 (205)
T ss_dssp TTC----------------CSCCCHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCc----------------hhhhhhhHHHHHHHHHHHHhcCCCeE
Confidence 210 12333455677888888888886543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.85 E-value=0.0088 Score=47.19 Aligned_cols=90 Identities=7% Similarity=0.011 Sum_probs=60.4
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc-----CC-HHHH---hcCCCCcEEEEc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY-----GS-YEAL---LDDKDIDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~-----~~-~~e~---l~~~~~D~V~i~ 80 (362)
.|+|+|+|.+|...+..++.....+|+ ++|+++++.+ +++++|.. .++ ++ .+++ .....+|+|+.+
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi-~vd~~~~kl~-~Ak~~GA~---~~in~~~~~~~~~~~~~~~~g~G~d~vi~~ 106 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRII-GIDLNKDKFE-KAMAVGAT---ECISPKDSTKPISEVLSEMTGNNVGYTFEV 106 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEE-EECSCGGGHH-HHHHHTCS---EEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEE-EecCcHHHHH-HHHhcCCc---EEECccccchHHHHHHHHhccccceEEEEe
Confidence 589999999999999998877445555 7889988766 67777753 121 11 2222 233578999988
Q ss_pred CCCcccHHHHHHHHHc--CCeEEEeC
Q 018020 81 LPTSMHVKWAISVAQK--KKHLLMEK 104 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~--gk~V~~EK 104 (362)
+......+.....+.. |+-|++=-
T Consensus 107 ~g~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 107 IGHLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp SCCHHHHHHHHTTSCTTTCEEEECSC
T ss_pred CCchHHHHHHHHHhhcCCeEEEEEEc
Confidence 8887766666655543 45666543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.85 E-value=0.0074 Score=45.97 Aligned_cols=71 Identities=14% Similarity=0.094 Sum_probs=45.7
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----CCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----PDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
||+|||+ |.+|...+..+...+-+.-+.++|.++.+++...-..... +......+..+.+++ .|+|+++..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~--aDivVitag 77 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKG--CDVVVIPAG 77 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTT--CSEEEECCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCC--CCEEEECCC
Confidence 7999996 9999998888877765555668898876655442222111 001112455566664 999998754
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.77 E-value=0.015 Score=45.61 Aligned_cols=89 Identities=12% Similarity=0.018 Sum_probs=62.0
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l---~~~~~D~V~i~~ 81 (362)
=.|.|+|+|..|...+..++...... |.+.|+++++.+ +++++|.... ..+ +..++.+ ....+|+|+.++
T Consensus 30 dtVlV~GaGG~G~~~~~~~~~~g~~~-Vi~~~~~~~k~~-~a~~~Ga~~~-i~~~~~~~~~~~~~~~~~~~G~D~vid~~ 106 (176)
T d2jhfa2 30 STCAVFGLGGVGLSVIMGCKAAGAAR-IIGVDINKDKFA-KAKEVGATEC-VNPQDYKKPIQEVLTEMSNGGVDFSFEVI 106 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHH-HHHHTTCSEE-ECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCce-EEeecCcHHHHH-HHHHhCCeeE-EecCCchhHHHHHHHHHhcCCCCEEEecC
Confidence 36899999999988888888874455 447788887655 5677765311 111 2233333 335799999999
Q ss_pred CCcccHHHHHHHHHcCCeE
Q 018020 82 PTSMHVKWAISVAQKKKHL 100 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V 100 (362)
......+.+...++.|..+
T Consensus 107 G~~~~~~~a~~~~~~~~g~ 125 (176)
T d2jhfa2 107 GRLDTMVTALSCCQEAYGV 125 (176)
T ss_dssp CCHHHHHHHHHHBCTTTCE
T ss_pred CchhHHHHHHHHHhcCCcc
Confidence 9998888888888776433
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.71 E-value=0.0058 Score=48.79 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=31.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF 49 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~ 49 (362)
||+|||+|.||...+..+... +++|+ ++|++++..++.
T Consensus 6 ~vaViGaG~mG~~iA~~~a~~-G~~V~-l~D~~~~~l~~~ 43 (186)
T d1wdka3 6 QAAVLGAGIMGGGIAYQSASK-GTPIL-MKDINEHGIEQG 43 (186)
T ss_dssp SEEEECCHHHHHHHHHHHHHT-TCCEE-EECSSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEE-EEECCHHHHhhh
Confidence 599999999999988777766 78866 899998876543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.71 E-value=0.011 Score=46.60 Aligned_cols=92 Identities=8% Similarity=-0.090 Sum_probs=60.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CC--HHHHh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GS--YEALL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~--~~e~l---~~~~~D~V~i~~ 81 (362)
=+|+|+|+|.+|...+..++.+ +...|.++|+++++.+ +++++|... +.-+ .| .++.. ....+|+|+.++
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~-G~~~Vi~~d~~~~kl~-~a~~lGa~~-~i~~~~~d~~~~~~~~~~~~~G~d~vid~~ 105 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAA-GASRIIGVGTHKDKFP-KAIELGATE-CLNPKDYDKPIYEVICEKTNGGVDYAVECA 105 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHH-HHHHTTCSE-EECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred CEEEEECCCchhHHHHHHHHHc-CCceeeccCChHHHHH-HHHHcCCcE-EEcCCCchhHHHHHHHHhcCCCCcEEEEcC
Confidence 3699999999999888888877 4444558888877655 567787531 0001 11 33333 234689999998
Q ss_pred CCcccHHHHHHHHHc--CCeEEEe
Q 018020 82 PTSMHVKWAISVAQK--KKHLLME 103 (362)
Q Consensus 82 ~~~~h~~~~~~al~~--gk~V~~E 103 (362)
....-.+....++.. |+-|++-
T Consensus 106 g~~~~~~~~~~~~~~~~G~~v~vG 129 (174)
T d1p0fa2 106 GRIETMMNALQSTYCGSGVTVVLG 129 (174)
T ss_dssp CCHHHHHHHHHTBCTTTCEEEECC
T ss_pred CCchHHHHHHHHHHHhcCceEEEE
Confidence 887666666666654 4555544
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.70 E-value=0.0049 Score=49.01 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=68.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH---HHHHHHHc----CCCCCCcccCCHHHHhcC-CCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK---ATNFAKAN----NFPPDAKVYGSYEALLDD-KDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~---~~~~~~~~----~~~~~~~~~~~~~e~l~~-~~~D~V~i 79 (362)
.-+|.|||+|..|+..+-.+.+. +++-+.+++|++++ +..+++++ +......-+.+.+++.+. .++|+|+.
T Consensus 18 ~k~vlIlGaGGaarai~~al~~~-g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN 96 (182)
T d1vi2a1 18 GKTMVLLGAGGASTAIGAQGAIE-GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTN 96 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCcHHHHHHHHHHhhc-CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecc
Confidence 35899999999999888888877 56666688887654 33444443 211000113344443321 35999999
Q ss_pred cCCCcccH----HHH--HHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 80 PLPTSMHV----KWA--ISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 80 ~~~~~~h~----~~~--~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
+||..... .+. ...++. ..+++| +..++.+ -.+++.|++.|.++.-|...
T Consensus 97 ~Tp~G~~~~~~~~~~~~~~~~~~-~~~v~D--i~Y~p~~-T~ll~~a~~~g~~~i~Gl~M 152 (182)
T d1vi2a1 97 GTKVGMKPLENESLVNDISLLHP-GLLVTE--CVYNPHM-TKLLQQAQQAGCKTIDGYGM 152 (182)
T ss_dssp CSSTTSTTSCSCCSCCCGGGSCT-TCEEEE--CCCSSSS-CHHHHHHHTTTCEEECHHHH
T ss_pred ccCCccccccchhhhhHHHhhhc-chhhHH--hhcCccc-cHHHHHHHHCcCeEeccHHH
Confidence 99965331 111 112222 334444 3333333 35566777777777666443
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.67 E-value=0.014 Score=45.95 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=49.8
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC--CCCC---cccCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF--PPDA---KVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~--~~~~---~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
.-+|.|||+|..++..+.++.+. + + +.|+.|+.++++.+++++.- .... .-+.+++..+ .+.|+++.+||
T Consensus 18 ~k~vlIlGaGG~arai~~aL~~~-~-~-i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dliIn~tp 92 (177)
T d1nvta1 18 DKNIVIYGAGGAARAVAFELAKD-N-N-IIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDL--DGVDIIINATP 92 (177)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSS-S-E-EEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCC--TTCCEEEECSC
T ss_pred CCEEEEECCcHHHHHHHHHHccc-c-c-eeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhcc--chhhhhccCCc
Confidence 35899999999999888777654 3 4 55999999999988876631 0000 0122222222 45899999999
Q ss_pred Cccc
Q 018020 83 TSMH 86 (362)
Q Consensus 83 ~~~h 86 (362)
...+
T Consensus 93 ~g~~ 96 (177)
T d1nvta1 93 IGMY 96 (177)
T ss_dssp TTCT
T ss_pred cccc
Confidence 7654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.63 E-value=0.012 Score=46.01 Aligned_cols=89 Identities=12% Similarity=0.047 Sum_probs=61.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCc---ccCCHHHHh---cCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAK---VYGSYEALL---DDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~e~l---~~~~~D~V~i~~~ 82 (362)
=+|+|+|+|..|...+..++.+ +...+.+.|+++++.+ +++++|...-+. ..++..+.+ ....+|+|+.++.
T Consensus 30 ~tVlI~GaGGvG~~aiq~ak~~-G~~~vi~~~~~~~k~~-~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G 107 (176)
T d2fzwa2 30 SVCAVFGLGGVGLAVIMGCKVA-GASRIIGVDINKDKFA-RAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 107 (176)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSCGGGHH-HHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CEEEEecchhHHHHHHHHHHHH-hcCceEEEcccHHHHH-HHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCC
Confidence 3689999999998888888877 5555667788877654 567887531100 113333333 2357999999999
Q ss_pred CcccHHHHHHHHHcCCe
Q 018020 83 TSMHVKWAISVAQKKKH 99 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~ 99 (362)
...-.+.+..+++.|..
T Consensus 108 ~~~~~~~~~~~~~~g~~ 124 (176)
T d2fzwa2 108 NVKVMRAALEACHKGWG 124 (176)
T ss_dssp CHHHHHHHHHTBCTTTC
T ss_pred CHHHHHHHHHhhcCCce
Confidence 88877888888877744
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.54 E-value=0.0046 Score=48.67 Aligned_cols=89 Identities=10% Similarity=-0.042 Sum_probs=58.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc---CCHHHHhc---CCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY---GSYEALLD---DKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~e~l~---~~~~D~V~i~~~ 82 (362)
=+|.|+|+|..|...+..++.....+ |.++|+++++.+ +++++|...-+... +..+++.. ...+|+|+.++.
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~-Vi~~~~~~~rl~-~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G 107 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKR-IIAVDLNPDKFE-KAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 107 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSE-EEEECSCGGGHH-HHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CEEEEEecCCccchHHHHHHHHhhch-heeecchHHHHH-HHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecC
Confidence 46899999999888777777764444 557788877655 56788853110001 11233332 347999999999
Q ss_pred CcccHHHHHHHHHcCCe
Q 018020 83 TSMHVKWAISVAQKKKH 99 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~ 99 (362)
...-.+.+..++..|..
T Consensus 108 ~~~~~~~a~~~~~~g~~ 124 (175)
T d1cdoa2 108 NVGVMRNALESCLKGWG 124 (175)
T ss_dssp CHHHHHHHHHTBCTTTC
T ss_pred CHHHHHHHHHHhhCCCc
Confidence 87777777777666533
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.42 E-value=0.041 Score=44.10 Aligned_cols=106 Identities=13% Similarity=0.096 Sum_probs=71.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEc-CCCccc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLP-LPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~-~~~~~h 86 (362)
-.||+|-|+|..|...+..|.+. +.+|+ ++|.+.++..... .+|. -.-+.++++.. ++|+++-| +.....
T Consensus 27 gk~v~IqG~G~VG~~~A~~L~~~-Gakvv-v~d~d~~~~~~~~-~~g~-----~~~~~~~~~~~-~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 27 GLTVLVQGLGAVGGSLASLAAEA-GAQLL-VADTDTERVAHAV-ALGH-----TAVALEDVLST-PCDVFAPCAMGGVIT 97 (201)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHH-HTTC-----EECCGGGGGGC-CCSEEEECSCSCCBC
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEE-EecchHHHHHHHH-hhcc-----cccCccccccc-cceeeeccccccccc
Confidence 36899999999999999999887 78877 8999988877654 3443 24467888875 79988854 444455
Q ss_pred HHHHHHHHHcCCeEEEeCCCC-CCHHHHHHHHHHHHHcCCEEE
Q 018020 87 VKWAISVAQKKKHLLMEKPMA-LNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~-~~~~~~~~l~~~a~~~~~~~~ 128 (362)
.+.+... +..+++|=-=. .+.+++ .+..+++|+.+.
T Consensus 98 ~~~a~~i---~ak~i~e~AN~p~~~~~~---~~~L~~rgI~~i 134 (201)
T d1c1da1 98 TEVARTL---DCSVVAGAANNVIADEAA---SDILHARGILYA 134 (201)
T ss_dssp HHHHHHC---CCSEECCSCTTCBCSHHH---HHHHHHTTCEEC
T ss_pred HHHHhhh---hhheeeccCCCCcchhhH---HHHhcccceEEE
Confidence 5555432 45677874211 122333 345567787653
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.33 E-value=0.017 Score=43.68 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=42.6
Q ss_pred EEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCC--HHHHHHHHHHc----CCCCCCcc-cCCHHHHhcCCCCcEEEEcC
Q 018020 10 RFGIIG-AADIARKLSRAITLAPNAVLSAVASRS--LEKATNFAKAN----NFPPDAKV-YGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~--~~~~~~~~~~~----~~~~~~~~-~~~~~e~l~~~~~D~V~i~~ 81 (362)
||+||| +|..|...+..+...+-+.-+.++|.+ ++.++..+.++ .++..+.+ ..+++++ . +.|+|+++.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~-~--~aDiVvita 78 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDT-A--GSDVVVITA 78 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGG-T--TCSEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHh-h--hcCEEEEec
Confidence 899999 699999888777666555445588853 34443222222 12222232 3555554 3 589999864
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
-
T Consensus 79 G 79 (142)
T d1o6za1 79 G 79 (142)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.31 E-value=0.014 Score=45.24 Aligned_cols=69 Identities=10% Similarity=0.153 Sum_probs=50.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc-cCC---HHHHhcCCCCcEEEEcC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV-YGS---YEALLDDKDIDAVYLPL 81 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~-~~~---~~e~l~~~~~D~V~i~~ 81 (362)
.+-||.|||+|..|..-+...+.+ +.++. ++|.+.++.+.+...++-. ... +.+ +++.+. +.|+||-+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~l-GA~V~-~~D~~~~~l~~l~~~~~~~--~~~~~~~~~~l~~~~~--~aDivI~aa 103 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGL-GAQVQ-IFDINVERLSYLETLFGSR--VELLYSNSAEIETAVA--EADLLIGAV 103 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHHGGG--SEEEECCHHHHHHHHH--TCSEEEECC
T ss_pred CCcEEEEECCChHHHHHHHHHhhC-CCEEE-EEeCcHHHHHHHHHhhccc--ceeehhhhhhHHHhhc--cCcEEEEee
Confidence 478999999999999888888888 67755 8899999999988887522 222 232 233344 589999653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.20 E-value=0.017 Score=44.78 Aligned_cols=127 Identities=9% Similarity=0.067 Sum_probs=76.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHHHh-c-CCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEALL-D-DKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e~l-~-~~~~D~V~i~~~ 82 (362)
=+|.|+|+|.+|...+..++.. +.+++ ++|+++++.+ +++++|.. .++ ++..+.+ + ....|.+++++.
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~-G~~Vi-~~~~~~~~~~-~a~~~Ga~---~~i~~~~~~~~~~~~~~~~g~~~~i~~~~ 102 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAM-GLHVA-AIDIDDAKLE-LARKLGAS---LTVNARQEDPVEAIQRDIGGAHGVLVTAV 102 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESCHHHHH-HHHHTTCS---EEEETTTSCHHHHHHHHHSSEEEEEECCS
T ss_pred CEEEEeeccccHHHHHHHHHHc-CCccc-eecchhhHHH-hhhccCcc---ccccccchhHHHHHHHhhcCCcccccccc
Confidence 4799999999999988888877 58877 4578887765 56777743 121 2333322 2 145778888888
Q ss_pred CcccHHHHHHHHHcC-CeEEE---eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccChhHHHHHHhhcCCC
Q 018020 83 TSMHVKWAISVAQKK-KHLLM---EKPMALNVAEFDVILNACEENGVQLMDGTMWVHNPRTAQMKEFVSDPQ 150 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~---EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~~g 150 (362)
.....+.+..+++.| +-|++ .+|...+... .. .+++.+. +....-.+.++.+-+++ .+|
T Consensus 103 ~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~------~~-~k~~~i~-Gs~~~~~~d~~e~l~l~-~~G 165 (166)
T d1llua2 103 SNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFD------VV-LKGLHIA-GSIVGTRADLQEALDFA-GEG 165 (166)
T ss_dssp CHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHH------HH-HTTCEEE-ECCSCCHHHHHHHHHHH-HTT
T ss_pred cchHHHHHHHHhcCCcEEEEEEecCCCccCCHHH------HH-hCCcEEE-EEeecCHHHHHHHHHHH-HCc
Confidence 887777777788776 44554 3343333322 22 2344443 32222223566666666 444
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.13 E-value=0.036 Score=45.42 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=75.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC-CCcc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL-PTSM 85 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~-~~~~ 85 (362)
+-.+|+|-|+|..|...++.|.+. +++++ ++|.+..+...+...+|. ...+.++++.. ++|+++-|. ....
T Consensus 38 ~g~~v~IqG~GnVG~~~a~~L~~~-Gakvv-~~d~~~~~~~~~~~~~g~-----~~~~~~~~~~~-~cDIl~PcA~~~~I 109 (230)
T d1leha1 38 EGLAVSVQGLGNVAKALCKKLNTE-GAKLV-VTDVNKAAVSAAVAEEGA-----DAVAPNAIYGV-TCDIFAPCALGAVL 109 (230)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHHHCC-----EECCGGGTTTC-CCSEEEECSCSCCB
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEE-eecccHHHHHHHHHhcCC-----cccCCcccccc-cccEeccccccccc
Confidence 357899999999999999999887 78888 678899988888888873 35577888875 799999764 4444
Q ss_pred cHHHHHHHHHcCCeEEEeCC-CCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 86 HVKWAISVAQKKKHLLMEKP-MALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 86 h~~~~~~al~~gk~V~~EKP-~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
+.+.+.. + ...++||-- --.+..++. +..+++|+.+..
T Consensus 110 ~~~~~~~-l--~ak~Ive~ANn~~t~~ea~---~~L~~rGI~~iP 148 (230)
T d1leha1 110 NDFTIPQ-L--KAKVIAGSADNQLKDPRHG---KYLHELGIVYAP 148 (230)
T ss_dssp STTHHHH-C--CCSEECCSCSCCBSSHHHH---HHHHHHTCEECC
T ss_pred ChHHhhc-c--CccEEEecccCCCCCchHH---HHHHhhCcEEEe
Confidence 5444443 3 345788742 112222333 345567776543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.00 E-value=0.016 Score=44.51 Aligned_cols=74 Identities=14% Similarity=0.091 Sum_probs=45.5
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCC---cEE--EEE--EcCCHHHHHHHHHHcCC-----CCCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPN---AVL--SAV--ASRSLEKATNFAKANNF-----PPDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~---~~v--v~v--~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~e~l~~~~ 73 (362)
++|||.|||+ |.+|...+..+...+- .+. .-+ .+.+.+.++..+.+... .......++..+.+++
T Consensus 3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 80 (154)
T d1y7ta1 3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD-- 80 (154)
T ss_dssp CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc--
Confidence 5899999997 9999988887764431 111 122 34455555555444221 1123445666777775
Q ss_pred CcEEEEcCC
Q 018020 74 IDAVYLPLP 82 (362)
Q Consensus 74 ~D~V~i~~~ 82 (362)
.|+|+++.-
T Consensus 81 advViitaG 89 (154)
T d1y7ta1 81 ADYALLVGA 89 (154)
T ss_dssp CSEEEECCC
T ss_pred ccEEEeecC
Confidence 999999764
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=94.86 E-value=0.03 Score=43.49 Aligned_cols=96 Identities=19% Similarity=0.148 Sum_probs=65.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC--CHHHHHHHHHH---cCCCCC---------------Ccc--cCCHHH
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASR--SLEKATNFAKA---NNFPPD---------------AKV--YGSYEA 67 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~--~~~~~~~~~~~---~~~~~~---------------~~~--~~~~~e 67 (362)
||||=|+|.+|+..++.+.+. +++++++-|+ +.+....+-+- +|.-+. +.+ ..++++
T Consensus 2 kIgINGfGRIGR~~~R~~~~~-~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~ 80 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEM-GAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN 80 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-TCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence 799999999999888887766 5899999986 44555544321 121100 011 123333
Q ss_pred H-hcCCCCcEEEEcCCCcccHHHHHHHHHcC-CeEEEeCCC
Q 018020 68 L-LDDKDIDAVYLPLPTSMHVKWAISVAQKK-KHLLMEKPM 106 (362)
Q Consensus 68 ~-l~~~~~D~V~i~~~~~~h~~~~~~al~~g-k~V~~EKP~ 106 (362)
+ ..+.++|+|+=||--..-.+-+..-++.| |.|++-.|.
T Consensus 81 i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~ 121 (169)
T d1dssg1 81 IPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS 121 (169)
T ss_dssp CCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred CCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc
Confidence 3 22236899999999988888888888888 888887774
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=94.86 E-value=0.25 Score=39.41 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=73.8
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCc-ccCCHHH---HhcCCCCcEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAK-VYGSYEA---LLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~-~~~~~~e---~l~~~~~D~V~i~~~ 82 (362)
.|.=||||. |.......+..|+..++| +|.++.....+ +++.++. ++. +..|+.+ .+.+..+|.|++.-|
T Consensus 32 lvLeIGcG~-G~~~~~lA~~~p~~~~iG-iD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 32 IHIEVGTGK-GQFISGMAKQNPDINYIG-IELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp EEEEECCTT-SHHHHHHHHHCTTSEEEE-ECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred eEEEEEecC-cHHHHHHHHhCCCCcEEE-eecchHHHHHHHHHHHHHhcc-CchhcccchhhhhcccCchhhhccccccc
Confidence 477799997 777777777899999885 67877665544 4556664 222 3455544 456678999998766
Q ss_pred Ccc----c----------HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEE
Q 018020 83 TSM----H----------VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQL 127 (362)
Q Consensus 83 ~~~----h----------~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~ 127 (362)
.+. | .+.+.+.|+.|--+++ .+.+..=++.+.+...+.+...
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i---~TD~~~y~~~~~~~~~~~~~~~ 164 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF---KTDNRGLFEYSLKSFSEYGLLL 164 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE---EESCHHHHHHHHHHHHHHTCEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE---EECChHHHHHHHHHHHHCCCcc
Confidence 542 2 3445577777866665 2345666677777777766543
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.015 Score=42.06 Aligned_cols=88 Identities=11% Similarity=0.139 Sum_probs=55.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHH-HHHHHHHcCCCCCCcccCCHHHHhc---CCCCcEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEK-ATNFAKANNFPPDAKVYGSYEALLD---DKDIDAVYLPLP 82 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~---~~~~D~V~i~~~ 82 (362)
...||||||.|..|+-.+.+.+++ +++++ ++|++++. +..++.++=. .-|+|.+.+.+ ...+|+|..-..
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~l-G~~v~-v~d~~~~~PA~~va~~~i~----~~~~d~~~l~~~~~~~~~DviT~E~E 83 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRL-GVEVI-AVDRYADAPAMHVAHRSHV----INMLDGDALRRVVELEKPHYIVPEIE 83 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTT-TCEEE-EEESSTTCGGGGGSSEEEE----CCTTCHHHHHHHHHHHCCSEEEECSS
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHC-CCEEE-EEcCCCCCchhhcCCeEEE----CCCCCHHHHHHHHHhhCCceEEEEec
Confidence 357999999999999999999999 78876 67776542 3333333311 23667776643 235898864333
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
+ --.+.+..+-+.|++|+
T Consensus 84 n-I~~~~L~~le~~g~~v~ 101 (111)
T d1kjqa2 84 A-IATDMLIQLEEEGLNVV 101 (111)
T ss_dssp C-SCHHHHHHHHHTTCEES
T ss_pred C-cCHHHHHHHHHCCCeEC
Confidence 2 22344444445566654
|
| >d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: 10-formyltetrahydrofolate dehydrogenase domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.02 Score=46.13 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=54.3
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC-----CHHHHHHHHHHcCCCC---CC-----cccCCHHHHhcCCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASR-----SLEKATNFAKANNFPP---DA-----KVYGSYEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~-----~~~~~~~~~~~~~~~~---~~-----~~~~~~~e~l~~~~~D 75 (362)
|||+++|.+..|...+..+.+. +++|++|+.. .......++.+.++|- .. ....++-+.+.+.++|
T Consensus 1 MkI~~~G~~~~~~~~l~~L~~~-~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~D 79 (203)
T d2bw0a2 1 MKIAVIGQSLFGQEVYCHLRKE-GHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAE 79 (203)
T ss_dssp CEEEEECCHHHHHHHHHHHHHT-TCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCS
T ss_pred CEEEEEcCCHHHHHHHHHHHHC-CCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCC
Confidence 7899999999999998888766 7899998842 1234566788888750 00 0011233445667899
Q ss_pred EEEEcCCCcccHHHHH
Q 018020 76 AVYLPLPTSMHVKWAI 91 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~ 91 (362)
+++++.-...-.+-+.
T Consensus 80 liv~~~~~~ii~~~~l 95 (203)
T d2bw0a2 80 LNVLPFCSQFIPMEII 95 (203)
T ss_dssp EEEESSCSSCCCHHHH
T ss_pred ceEEeecchhhhhhhh
Confidence 9999876543333333
|
| >d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Methylesterase CheB, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.73 E-value=0.22 Score=37.02 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=60.8
Q ss_pred ceeEEEEEeccHHHHHH-HHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------CCCcccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------PDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~-~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~e~l~~~~~D~V 77 (362)
+++||.||=--..-... ...|...+...+|+.+..-.+..+.+.+ .... |+..-++-+..+-+....-.|
T Consensus 2 ~kirVLiVDD~~~~r~~l~~~L~~~g~~~~v~~a~~g~~al~~~~~-~~pDlvllDi~MP~~dG~e~~~~ir~~~~~~~i 80 (140)
T d1a2oa1 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKK-FNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (140)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHH-HCCSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHh-cCCCEEEEcCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 48999999987765554 4455667667777777544454554433 3211 222223333344343333334
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCC
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALN 109 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~ 109 (362)
+|.+-+....+++.+|++.|-.=|+.||+...
T Consensus 81 ~i~~~~~~~~~~~~~al~~Ga~~yl~KP~~~~ 112 (140)
T d1a2oa1 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGI 112 (140)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSC
T ss_pred EEEEecCCChHHHHHHHHcCCCEEEECCCCCH
Confidence 44444444457888999999999999997543
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.73 E-value=0.22 Score=39.68 Aligned_cols=144 Identities=14% Similarity=0.162 Sum_probs=86.7
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcc-cCCHH---HHhcCCCCcEEEEcCC
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAKV-YGSYE---ALLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~---e~l~~~~~D~V~i~~~ 82 (362)
.|.=||||. |.......+..|+..++| +|.++.....+ +.+.+++ ++.+ ..|.. +.+.+..+|.|++.-|
T Consensus 34 lvLdIGcG~-G~~~~~lA~~~p~~~~iG-id~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 34 IHVEVGSGK-GAFVSGMAKQNPDINYIG-IDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp EEEEESCTT-SHHHHHHHHHCTTSEEEE-EESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred eEEEEeccC-CHHHHHHHHHCCCCceEE-EeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhccCCceehhccccc
Confidence 366799997 777777778899999886 67877655444 3445553 2222 34433 4456678999998877
Q ss_pred Ccc----c----------HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC------hhHHHH
Q 018020 83 TSM----H----------VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMWVHN------PRTAQM 142 (362)
Q Consensus 83 ~~~----h----------~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~------p~~~~~ 142 (362)
.+. | ...+...|+.|--+++ .+.+..-+..+++...+.+..+-......+. +....=
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i---~TD~~~Y~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~T~yE 187 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF---KTDNRGLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYE 187 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE---EESCHHHHHHHHHHHHHHTCEEEEEESSGGGSCCCCCCCCHHH
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE---EECCccHHHHHHHHHHHCCcccccccccccccccCCCCCCHHH
Confidence 642 2 3445567777866665 2345566777778777777654433222221 223334
Q ss_pred HHhhcCCCCccceEEEEEEe
Q 018020 143 KEFVSDPQRFGQLRTMHSCF 162 (362)
Q Consensus 143 k~~i~~~g~iG~i~~i~~~~ 162 (362)
++.+ ++|. +|+.++++|
T Consensus 188 ~k~~-~~G~--~Iy~l~~~~ 204 (204)
T d1yzha1 188 QKFS-NKGQ--VIYRVEAEF 204 (204)
T ss_dssp HHTG-GGCC--CCEEEEEEC
T ss_pred HHHH-HcCC--CeEEEEEEC
Confidence 4454 4442 567776653
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.083 Score=39.85 Aligned_cols=70 Identities=16% Similarity=0.211 Sum_probs=41.0
Q ss_pred eEEEEEe-ccHHHHHHHHHHh-cCCCcEEEEEEcCCHHHHHHHHHHc-CCCC-----CCcccCCHHHHhcCCCCcEEEEc
Q 018020 9 IRFGIIG-AADIARKLSRAIT-LAPNAVLSAVASRSLEKATNFAKAN-NFPP-----DAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 9 ~~v~iiG-~G~~g~~~~~~~~-~~~~~~vv~v~d~~~~~~~~~~~~~-~~~~-----~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
|||+||| +|..|...+..+. +.+-..-+.++|..+ .++..+.++ +... .....+++++ ++ +.|+|+++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~-~~--~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPA-LE--GADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHH-HT--TCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccc-cC--CCCEEEEC
Confidence 7999999 5999988777653 445444455888764 333333332 2210 0011334553 44 48999997
Q ss_pred CC
Q 018020 81 LP 82 (362)
Q Consensus 81 ~~ 82 (362)
.-
T Consensus 77 aG 78 (145)
T d2cmda1 77 AG 78 (145)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=94.42 E-value=0.072 Score=40.79 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=50.8
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
-++.++|.|+.|+..+..++.. +..++ |++++|-++-+..- -|. . ..+.+|++.. .|+++-+|.+.
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~-Ga~V~-V~E~DPi~alqA~m-dGf----~-v~~~~~a~~~--aDi~vTaTGn~ 89 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGL-GARVY-ITEIDPICAIQAVM-EGF----N-VVTLDEIVDK--GDFFITCTGNV 89 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH-TCEEE-EECSCHHHHHHHHT-TTC----E-ECCHHHHTTT--CSEEEECCSSS
T ss_pred CEEEEecccccchhHHHHHHhC-CCEEE-EEecCchhhHHHHh-cCC----c-cCchhHcccc--CcEEEEcCCCC
Confidence 4789999999999999999988 67655 89999965443322 132 2 4688999886 89999999873
|
| >d1gr0a1 c.2.1.3 (A:14-200,A:312-367) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Myo-inositol 1-phosphate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.31 E-value=0.22 Score=40.14 Aligned_cols=154 Identities=14% Similarity=0.145 Sum_probs=93.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHh---cC------C-------------CcEEEEEEcCCHHHH-----HHHHHHcCC----
Q 018020 7 AAIRFGIIGAADIARKLSRAIT---LA------P-------------NAVLSAVASRSLEKA-----TNFAKANNF---- 55 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~---~~------~-------------~~~vv~v~d~~~~~~-----~~~~~~~~~---- 55 (362)
+++||+|+|-|+-++.+++.+. +. | +.|+|+.+|.+..+. +++-..-|.
T Consensus 1 ~kIrVaIvGvGNcASslvqGieyyk~~~~~~~v~Glm~~~iggY~v~DIe~VaafDVD~~KVGkdlseAi~a~pN~t~~~ 80 (243)
T d1gr0a1 1 TEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGFDLSDAIFASENNTIKI 80 (243)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTTCCTTSCCTTCSCSEETTEEGGGEEEEEEEECBTTTTTSBHHHHTTSTTCCCCCC
T ss_pred CceEEEEEcchHHHHHHHHHHHHHhcCCCccccccceecccCCccccceEEEEEEecCccccCCcHHHHHhcCCCCceee
Confidence 3799999999998887766553 21 1 349999999877542 222111111
Q ss_pred ---CC-CC-----------------------cccCCHHHHhcCCCCcEEEEcCCCcc---cHHHHHHHHHcCCeEEEeCC
Q 018020 56 ---PP-DA-----------------------KVYGSYEALLDDKDIDAVYLPLPTSM---HVKWAISVAQKKKHLLMEKP 105 (362)
Q Consensus 56 ---~~-~~-----------------------~~~~~~~e~l~~~~~D~V~i~~~~~~---h~~~~~~al~~gk~V~~EKP 105 (362)
|+ ++ .-..+.-+.|++.++|+++...|... -.-++..||++|.+..---|
T Consensus 81 ~d~p~~gv~V~~G~~LDg~~~~~~~~~~~~~~~~~dvv~~Lk~~~~dVlvnylPvGse~A~~~YA~~al~Ag~aFVN~iP 160 (243)
T d1gr0a1 81 ADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALP 160 (243)
T ss_dssp SCCCCCCCBCEECCCTTSCCHHHHTTSCBCSSCCCCHHHHHHHTTCSEEEECCCTTCHHHHHHHHHHHHHHTCEEEECSS
T ss_pred CCCCCCCCEEeccCCccccchhhhcccCCCCccHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHHHHHHHcCceEEeccc
Confidence 10 00 11224556677778999999888754 35678889999988775555
Q ss_pred CCCCHHHHHHHHHHHHHcCCEEEEeeecc------cChhHHHHHHhhcCCCCccceEEEEEEee
Q 018020 106 MALNVAEFDVILNACEENGVQLMDGTMWV------HNPRTAQMKEFVSDPQRFGQLRTMHSCFS 163 (362)
Q Consensus 106 ~~~~~~~~~~l~~~a~~~~~~~~v~~~~r------~~p~~~~~k~~i~~~g~iG~i~~i~~~~~ 163 (362)
...-.. .+..+..+++|+++.-.-..- ..-.++.+|-.+ +.|.-|.+..+...|.
T Consensus 161 ~fIAsd--p~w~~kF~e~glpivGDDikspn~AgvviDaiR~aKla~-dRGi~G~l~~~sa~~m 221 (243)
T d1gr0a1 161 VFIASD--PVWAKKFTDARVPIVGDDIKSPNSAGVIIDAVRAAKIAK-DRGIGGPVIPASAYLM 221 (243)
T ss_dssp CCSTTS--HHHHHHHHHHTCEEEESSBCCHHHHHHHHHHHHHHHHHH-HTTCCEECHHHHHHHB
T ss_pred ccccCC--HHHHHHHHHcCCcEEcccccccccchhHHHHHHHHHHHH-HcCCCCcccchhHhhh
Confidence 433222 246788899999876432111 011122234444 6677777777665544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.053 Score=42.19 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=57.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc----CCHHH----HhcCCCCcEEEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY----GSYEA----LLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~----~~~~e----~l~~~~~D~V~i 79 (362)
=+|.|+|+ |.+|...++.++.+ +++++++++ ++++. ++++++|.. .++ .|+.+ ......+|+|+-
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~-~~~~~-~~~~~~Ga~---~vi~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAY-GLKILGTAG-TEEGQ-KIVLQNGAH---EVFNHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHT-TCEEEEEES-SHHHH-HHHHHTTCS---EEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CEEEEEecccccccccccccccc-Ccccccccc-ccccc-ccccccCcc---cccccccccHHHHhhhhhccCCceEEee
Confidence 37999996 99999888888877 789887775 55554 456778753 222 22333 233456888887
Q ss_pred cCCCcccHHHHHHHHHcC-CeEEE
Q 018020 80 PLPTSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~g-k~V~~ 102 (362)
++.. .+.+.+..+++.| +-|.+
T Consensus 104 ~~g~-~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 104 MLAN-VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp SCHH-HHHHHHHHHEEEEEEEEEC
T ss_pred cccH-HHHHHHHhccCCCCEEEEE
Confidence 7764 4666666677665 33444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.15 E-value=0.016 Score=45.18 Aligned_cols=130 Identities=12% Similarity=0.090 Sum_probs=78.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CC-HHHHhc---CCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GS-YEALLD---DKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~-~~e~l~---~~~~D~V~i~~ 81 (362)
=+|+|+|+ |.+|...+..++.....+ +.++++++++.+ +++++|.. .+..+ .+ .+++.+ ...+|+|+.++
T Consensus 29 ~~vlV~G~~G~vG~~~~~~~~~~g~~~-V~~~~~~~~~~~-~~~~~Ga~-~~i~~~~~~~~~~~~~~~~~~~~d~vid~~ 105 (170)
T d1jvba2 29 KTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVE-AAKRAGAD-YVINASMQDPLAEIRRITESKGVDAVIDLN 105 (170)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCCE-EEEEESSHHHHH-HHHHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred CEEEEEeccccceeeeeeccccccccc-ccccccchhhHH-HHHHcCCc-eeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence 46899995 889988888887774344 557888887655 45667642 00001 22 233332 34689999999
Q ss_pred CCcccHHHHHHHHHcCCe-EEE---eCCCCCCHHHHHHHHHHHHHcCCEEEEeeecccC-hhHHHHHHhhcCCCC
Q 018020 82 PTSMHVKWAISVAQKKKH-LLM---EKPMALNVAEFDVILNACEENGVQLMDGTMWVHN-PRTAQMKEFVSDPQR 151 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~-V~~---EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~r~~-p~~~~~k~~i~~~g~ 151 (362)
....-.+.+..+++.|-. |++ .+|+..+.... . .+++.+. |.. .++ ..+..+-+++ ++|+
T Consensus 106 g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~-----~--~k~i~i~-Gs~-~~~~~d~~~~l~lv-~~GK 170 (170)
T d1jvba2 106 NSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLI-----T--LSEIQFV-GSL-VGNQSDFLGIMRLA-EAGK 170 (170)
T ss_dssp CCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHH-----H--HHTCEEE-ECC-SCCHHHHHHHHHHH-HTTS
T ss_pred ccchHHHhhhhhcccCCEEEEeccccCccccCHHHH-----H--hCCcEEE-EEe-cCCHHHHHHHHHHH-HcCC
Confidence 988777788888877744 344 34555554432 1 2345543 322 223 3367777777 5553
|
| >d1qkia1 c.2.1.3 (A:12-199,A:435-449) Glucose 6-phosphate dehydrogenase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose 6-phosphate dehydrogenase, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.035 Score=44.53 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=38.9
Q ss_pred cEEEEcCCCcccHHHHHHHHHcC------CeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKK------KHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~g------k~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
=+.+.++||..-..++...-++| ..|++|||++.|++.|++|-+...+.
T Consensus 125 rifYLAvpP~~f~~i~~~L~~~~l~~~~~~RiVvEKPfG~Dl~SA~~Ln~~l~~~ 179 (203)
T d1qkia1 125 RLFYLALPPTVYEAVTKNIHESCMSQIGWNRIIVEKPFGRDLQSSDRLSNHISSL 179 (203)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSCCSSSCEEEEESCCCCSCHHHHHHHHHHHHHH
T ss_pred eEEEEecCHHHHHHHHHHHHHhcCCccCceeEEEecCCCCChHHHHHHHHHHHhh
Confidence 37789999988766666554544 25999999999999999999888763
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.044 Score=44.02 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=47.1
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH--------HHHHHHHHcCCCCCCcccC---C--HHHHhcCCCCc
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE--------KATNFAKANNFPPDAKVYG---S--YEALLDDKDID 75 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~--------~~~~~~~~~~~~~~~~~~~---~--~~e~l~~~~~D 75 (362)
|||.++|.+.+|...+..|.+. +.+|++|+..... ..+.++++.|++ +.... + +-+.+...++|
T Consensus 1 Mkiv~~~~~~~g~~~l~~L~~~-g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~--~~~~~~~~~~~~~~~i~~~~~D 77 (203)
T d2blna2 1 MKTVVFAYHDMGCLGIEALLAA-GYEISAIFTHTDNPGEKAFYGSVARLAAERGIP--VYAPDNVNHPLWVERIAQLSPD 77 (203)
T ss_dssp CEEEEEECHHHHHHHHHHHHHT-TCEEEEEECCCC------CCCCHHHHHHHHTCC--EECCSCCCSHHHHHHHHHTCCS
T ss_pred CeEEEEecCHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcccccCHHHHHHHHcCCc--ceecccccchhhhhhhhhhccc
Confidence 6899999999999999998876 6899999853221 145667777765 11111 1 22334445778
Q ss_pred EEEEcCCC
Q 018020 76 AVYLPLPT 83 (362)
Q Consensus 76 ~V~i~~~~ 83 (362)
+++++.-.
T Consensus 78 lii~~g~~ 85 (203)
T d2blna2 78 VIFSFYYR 85 (203)
T ss_dssp EEEEESCC
T ss_pred ceeeeecc
Confidence 77766543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.36 E-value=0.087 Score=40.15 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=45.7
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcC------CCcEEEEEEcCCH--HHHHHHHHHc---CCC--CCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLA------PNAVLSAVASRSL--EKATNFAKAN---NFP--PDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~------~~~~vv~v~d~~~--~~~~~~~~~~---~~~--~~~~~~~~~~e~l~~~ 72 (362)
+++||.|||+ |..|...+..+..- ...+++ .+|.++ +.++.+..+. ..+ .......+..+.+++
T Consensus 2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~-l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (154)
T d5mdha1 2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILV-LLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD- 79 (154)
T ss_dssp CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEE-EECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT-
T ss_pred CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEE-EecCccchhhhhhhhhhhcccccccccccccCcccccccCC-
Confidence 4899999995 99999777766421 123444 677644 4444443321 111 223445677777775
Q ss_pred CCcEEEEcCCC
Q 018020 73 DIDAVYLPLPT 83 (362)
Q Consensus 73 ~~D~V~i~~~~ 83 (362)
.|+|+++...
T Consensus 80 -~dvVVitag~ 89 (154)
T d5mdha1 80 -LDVAILVGSM 89 (154)
T ss_dssp -CSEEEECCSC
T ss_pred -ceEEEEeccc
Confidence 9999997543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=93.18 E-value=0.35 Score=41.44 Aligned_cols=108 Identities=16% Similarity=0.098 Sum_probs=60.0
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEc---CCHHHHHHHHHH--cCCC---CCCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVAS---RSLEKATNFAKA--NNFP---PDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d---~~~~~~~~~~~~--~~~~---~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||.|+|+ |++|+..+..|.+. +.+|+++.. ............ -++. -+..-.+++++++++.++|+|+-
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH 79 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH 79 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence 68999996 88999999999877 688887531 111222222111 1221 01111234556677667999985
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
..-.. +..... +. +..+ +..++.....|++.|++.++.
T Consensus 80 lAa~~-~~~~~~---~~--~~~~---~~~Nv~gt~nlL~~~~~~~v~ 117 (338)
T d1udca_ 80 FAGLK-AVGESV---QK--PLEY---YDNNVNGTLRLISAMRAANVK 117 (338)
T ss_dssp CCSCC-CHHHHH---HC--HHHH---HHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCcc-chhhHH---hC--HHHH---HHhHHHHHHHHHHHHHHhCCC
Confidence 32211 111111 00 0000 233678888999999998864
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=93.11 E-value=0.13 Score=42.63 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=70.7
Q ss_pred eEEEEEeccHHHHH--HHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCc-ccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGAADIARK--LSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDAK-VYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~G~~g~~--~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~-~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
.||.=+|||+-+.. .++.+ .|+..|. .+|.+++.++...+. ++...++. ...|+.+.+.+..+|+|++-.|
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v--~~~g~V~-~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~p 163 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYAL--NGKGTLT-VVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADIP 163 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHH--TTSSEEE-EECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECCS
T ss_pred CEEEEeeeeCcHHHHHHHHHh--CCCcEEE-EEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecCC
Confidence 68999999873322 23333 3455655 579998877665543 22212212 2467777777778999998777
Q ss_pred Cc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 83 TS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 83 ~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
.+ ...+.+.++|+.|-.+.+=-| +.++..++.+..+++|
T Consensus 164 ~p~~~l~~~~~~LKpGG~lv~~~P---~i~Qv~~~~~~l~~~g 203 (250)
T d1yb2a1 164 DPWNHVQKIASMMKPGSVATFYLP---NFDQSEKTVLSLSASG 203 (250)
T ss_dssp CGGGSHHHHHHTEEEEEEEEEEES---SHHHHHHHHHHSGGGT
T ss_pred chHHHHHHHHHhcCCCceEEEEeC---CcChHHHHHHHHHHCC
Confidence 65 456777788888866665333 6777777777776666
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=92.92 E-value=0.22 Score=41.47 Aligned_cols=112 Identities=13% Similarity=0.083 Sum_probs=75.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcc-cCCHHHHhcCCCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLA-PNAVLSAVASRSLEKATNF---AKANNFPPDAKV-YGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~e~l~~~~~D~V~i~~~ 82 (362)
-.+|.=+|||+ |..-...++.. |+.+|+ .+|.+++..+.. .++++....+.+ ..|+.+.+....+|.|++-+|
T Consensus 104 G~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~-~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~V~~d~p 181 (266)
T d1o54a_ 104 GDRIIDTGVGS-GAMCAVLARAVGSSGKVF-AYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVP 181 (266)
T ss_dssp TCEEEEECCTT-SHHHHHHHHHTTTTCEEE-EECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEECCS
T ss_pred CCEEEECCCCC-CHHHHHHHHHhCCCcEEE-EEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceeeeEecCC
Confidence 46889999988 43222223333 566766 578988765544 444554322221 355556666678999999888
Q ss_pred Ccc-cHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 83 TSM-HVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 83 ~~~-h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
... ..+.+.++|+.|-.+.+--| +.++..++.+..+++|
T Consensus 182 ~p~~~l~~~~~~LKpGG~lv~~~P---~~~Qv~~~~~~l~~~g 221 (266)
T d1o54a_ 182 DPWNYIDKCWEALKGGGRFATVCP---TTNQVQETLKKLQELP 221 (266)
T ss_dssp CGGGTHHHHHHHEEEEEEEEEEES---SHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhhcCCCCEEEEEeC---cccHHHHHHHHHHHCC
Confidence 864 56888899999977766334 7888888888888877
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.66 E-value=0.35 Score=36.29 Aligned_cols=107 Identities=9% Similarity=0.056 Sum_probs=65.7
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH---cCCCCCCccc---CCHHHHhc---CCCCcEEEEc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA---NNFPPDAKVY---GSYEALLD---DKDIDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~---~~~~~~~~~~---~~~~e~l~---~~~~D~V~i~ 80 (362)
.|.|+|+|..|...+..|.+. +.+++ +.|.++++.....++ .|+. .++ ++.+ +|+ -.+.|+|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~-~~~v~-vId~d~~~~~~~~~~~~~~~~~---vi~Gd~~d~~-~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR-GQNVT-VISNLPEDDIKQLEQRLGDNAD---VIPGDSNDSS-VLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT-TCCEE-EEECCCHHHHHHHHHHHCTTCE---EEESCTTSHH-HHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCEE-EEeccchhHHHHHHHhhcCCcE---EEEccCcchH-HHHHhccccCCEEEEc
Confidence 589999999999999999877 56666 456666554433333 2332 122 2333 332 2468999999
Q ss_pred CCCcccHHHHHHHHHc-C--CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 81 LPTSMHVKWAISVAQK-K--KHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~-g--k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
++++..-..+...++. + .+|++. +.+.+.... .++.|+-..+
T Consensus 79 ~~~d~~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~----l~~~Gad~vi 123 (153)
T d1id1a_ 79 SDNDADNAFVVLSAKDMSSDVKTVLA---VSDSKNLNK----IKMVHPDIIL 123 (153)
T ss_dssp SSCHHHHHHHHHHHHHHTSSSCEEEE---CSSGGGHHH----HHTTCCSEEE
T ss_pred cccHHHHHHHHHHHHHhCCCCceEEE---EcCHHHHHH----HHHCCCCEEE
Confidence 9998776555554433 2 567775 345444433 3556765544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.59 E-value=0.1 Score=38.28 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=59.6
Q ss_pred EEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCH--HHHhc---CCCCcEEEEcCCCcc
Q 018020 11 FGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSY--EALLD---DKDIDAVYLPLPTSM 85 (362)
Q Consensus 11 v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~e~l~---~~~~D~V~i~~~~~~ 85 (362)
|.|+|.|..|...+..|+.. +++ +.+.++++.+.+. ..|+. .++.|. .++|. -.+.++++++++++.
T Consensus 3 ivI~G~g~~g~~l~~~L~~~---~i~-vi~~d~~~~~~~~-~~~~~---~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~ 74 (129)
T d2fy8a1 3 VVICGWSESTLECLRELRGS---EVF-VLAEDENVRKKVL-RSGAN---FVHGDPTRVSDLEKANVRGARAVIVNLESDS 74 (129)
T ss_dssp EEEESCCHHHHHHHHTSCGG---GEE-EEESCTTHHHHHH-HTTCE---EEESCTTSHHHHHHTTCTTCSEEEECCSSHH
T ss_pred EEEECCCHHHHHHHHHHcCC---CCE-EEEcchHHHHHHH-hcCcc---ccccccCCHHHHHHhhhhcCcEEEEeccchh
Confidence 67999999999999988644 343 5678888777664 44543 233332 34443 257899999999876
Q ss_pred cHHHHHHHHHc---CCeEEEeCCCCCCHHHHHHH
Q 018020 86 HVKWAISVAQK---KKHLLMEKPMALNVAEFDVI 116 (362)
Q Consensus 86 h~~~~~~al~~---gk~V~~EKP~~~~~~~~~~l 116 (362)
-...+...++. ..+++++ +.+.+....+
T Consensus 75 ~n~~~~~~~r~~~~~~~iia~---~~~~~~~~~l 105 (129)
T d2fy8a1 75 ETIHCILGIRKIDESVRIIAE---AERYENIEQL 105 (129)
T ss_dssp HHHHHHHHHHHHCSSSCEEEE---CSSGGGHHHH
T ss_pred hhHHHHHHHHHHCCCceEEEE---EcCHHHHHHH
Confidence 55544444433 3467764 4455554444
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.55 E-value=0.062 Score=42.02 Aligned_cols=88 Identities=14% Similarity=0.114 Sum_probs=56.6
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHH-Hh---cCCCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEA-LL---DDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e-~l---~~~~~D~V~i~~ 81 (362)
=+|.|.|+ |.+|...++.++.. +++++++++ ++++. ++++++|.. .+..+ .++.+ +. ....+|+|+-++
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~-~~~~~-~~l~~~Ga~-~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~ 102 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMI-GARIYTTAG-SDAKR-EMLSRLGVE-YVGDSRSVDFADEILELTDGYGVDVVLNSL 102 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHH-TCEEEEEES-SHHHH-HHHHTTCCS-EEEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred CEEEEECCCCCcccccchhhccc-cccceeeec-ccccc-ccccccccc-ccccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence 46788785 88999888888766 788887775 55655 456677743 11111 23323 22 335789999888
Q ss_pred CCcccHHHHHHHHHcCCeEE
Q 018020 82 PTSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~ 101 (362)
.. .+.+.+..+++.+-+++
T Consensus 103 g~-~~~~~~~~~l~~~G~~v 121 (183)
T d1pqwa_ 103 AG-EAIQRGVQILAPGGRFI 121 (183)
T ss_dssp CT-HHHHHHHHTEEEEEEEE
T ss_pred cc-hHHHHHHHHhcCCCEEE
Confidence 76 56677777777664433
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=0.16 Score=39.62 Aligned_cols=89 Identities=9% Similarity=0.068 Sum_probs=52.8
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH----------------------HHHHHHHHcCCC--CCCcc
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE----------------------KATNFAKANNFP--PDAKV 61 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~----------------------~~~~~~~~~~~~--~~~~~ 61 (362)
.++-||+|||+|..|...+..+.+. +.+++ +++++++ ......+++|+. .+..+
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~-G~~Vt-l~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V 118 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAAR-GHQVT-LFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 118 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTT-TCEEE-EEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred CCCcEEEEECccHHHHHHHHHHHhh-ccceE-EEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence 3567999999999999888888766 67765 7876431 112223334442 11111
Q ss_pred cCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEE
Q 018020 62 YGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLM 102 (362)
Q Consensus 62 ~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~ 102 (362)
..+ . ..+.|.|+++|-...+ .....-++.|+.|.+
T Consensus 119 t~~---~--~~~~d~vilAtG~~~~-~~~~pg~~~g~~v~v 153 (179)
T d1ps9a3 119 TAD---Q--LQAFDETILASGIPNR-ALAQPLIDSGKTVHL 153 (179)
T ss_dssp CSS---S--SCCSSEEEECCCEECC-TTHHHHHTTTCCEEE
T ss_pred ccc---c--cccceeEEEeecCCCc-ccccchhccCCEEEE
Confidence 111 1 2468999999875432 233345566777654
|
| >d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Transcriptional regulatory protein FixJ, receiver domain species: Rhizobium meliloti [TaxId: 382]
Probab=92.23 E-value=0.49 Score=34.10 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=62.0
Q ss_pred ceeEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------CCCcccCCHHHHhc-CCCCcE
Q 018020 7 AAIRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------PDAKVYGSYEALLD-DKDIDA 76 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~e~l~-~~~~D~ 76 (362)
++.||.||=--..-.. ....|+.. ++++. .++ +.+.+....++.... |+..-++=++++-+ .+++-+
T Consensus 2 ~~~~ILiVDDd~~~~~~l~~~L~~~-g~~v~-~a~-~~~~al~~~~~~~~dlvi~D~~mp~~~G~e~~~~lr~~~~~~~i 78 (123)
T d1dbwa_ 2 QDYTVHIVDDEEPVRKSLAFMLTMN-GFAVK-MHQ-SAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPS 78 (123)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHT-TCEEE-EES-CHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHC-CCEEE-EEC-CHHHHHHHHhhcCCcEEEEeccCccccchHHHHHHHhcCCCCeE
Confidence 4789999987665444 44445554 78865 444 344444444443210 22122222333322 234555
Q ss_pred EEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHH
Q 018020 77 VYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACE 121 (362)
Q Consensus 77 V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~ 121 (362)
++++.. ...+...+|+++|..=++.||+ +.++..+.++.+-
T Consensus 79 I~lt~~--~~~~~~~~a~~~Ga~~yl~KP~--~~~~L~~~i~~a~ 119 (123)
T d1dbwa_ 79 IVITGH--GDVPMAVEAMKAGAVDFIEKPF--EDTVIIEAIERAS 119 (123)
T ss_dssp EEEECT--TCHHHHHHHHHTTCSEEEESSC--CHHHHHHHHHHHH
T ss_pred EEEEee--CCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHH
Confidence 555443 4567888999999999999996 5666665555543
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=92.04 E-value=0.21 Score=41.28 Aligned_cols=120 Identities=8% Similarity=0.059 Sum_probs=72.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHHHHHHHHc-CCCCC-C--------cccCCHH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKATNFAKAN-NFPPD-A--------KVYGSYE 66 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~~~~~~~~-~~~~~-~--------~~~~~~~ 66 (362)
+..||+|=|+|..|...++.|.+. +.+|++|.|.+ .+...++..+. ....+ . ..+-+.+
T Consensus 35 ~g~~v~IQGfGnVG~~~a~~L~e~-GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (255)
T d1bgva1 35 VGKTVALAGFGNVAWGAAKKLAEL-GAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFFPGE 113 (255)
T ss_dssp TTCEEEECCSSHHHHHHHHHHHHH-TCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceeechh
Confidence 346999999999999999999877 79999998852 22222221110 00000 0 0122344
Q ss_pred HHhcCCCCcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 67 ALLDDKDIDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 67 e~l~~~~~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+++.. ++|+.+=| +.+.-+.+-+......|.-+++|=-=.....++.+. +.++.|+.+..+
T Consensus 114 ~~~~~-~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~--ll~~~gI~vvPD 175 (255)
T d1bgva1 114 KPWGQ-KVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRF--LMQQPNMVVAPS 175 (255)
T ss_dssp CGGGS-CCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHH--HHHCTTCEEECH
T ss_pred hcccc-cccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHHH--HHHhcCCEEehH
Confidence 56654 79998754 555667777777777788888885222222333322 355677776544
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=92.00 E-value=0.085 Score=44.18 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=61.1
Q ss_pred CceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc-cCCHHHH-hcCCCCcEEEEcCCC
Q 018020 6 QAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV-YGSYEAL-LDDKDIDAVYLPLPT 83 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~e~-l~~~~~D~V~i~~~~ 83 (362)
.+..+|.=||||. |.......+..|+.+++| +|.+++..+..++... ++.. ..|..++ +.+..+|+|+..- .
T Consensus 83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~~g-iD~s~~~~~~a~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~-~ 156 (268)
T d1p91a_ 83 DKATAVLDIGCGE-GYYTHAFADALPEITTFG-LDVSKVAIKAAAKRYP---QVTFCVASSHRLPFSDTSMDAIIRIY-A 156 (268)
T ss_dssp TTCCEEEEETCTT-STTHHHHHHTCTTSEEEE-EESCHHHHHHHHHHCT---TSEEEECCTTSCSBCTTCEEEEEEES-C
T ss_pred CCCCEEEEeCCCC-cHHHHHHHHHCCCCEEEE-ecchHhhhhhhhcccc---cccceeeehhhccCCCCCEEEEeecC-C
Confidence 3567899999997 544444445567888886 5899887776666542 2232 3566665 4566799998432 2
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCH
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNV 110 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~ 110 (362)
..|.+-+.+.|+.|-.+++.-|-...+
T Consensus 157 ~~~~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 157 PCKAEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp CCCHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred HHHHHHHHHHhCCCcEEEEEeeCCcch
Confidence 245555566666665666555543333
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=0.093 Score=37.94 Aligned_cols=97 Identities=8% Similarity=0.040 Sum_probs=65.5
Q ss_pred eeEEEEEeccHH-----------HHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCC----CCcccCCHHHHhcCC
Q 018020 8 AIRFGIIGAADI-----------ARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPP----DAKVYGSYEALLDDK 72 (362)
Q Consensus 8 ~~~v~iiG~G~~-----------g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~----~~~~~~~~~e~l~~~ 72 (362)
+-||.|||+|.. +...+++|++. +++.+ +++.|++... -.+.+.. .+.-.++..++++.+
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~-g~~~I-liN~NPeTVs---td~d~aD~lYfeplt~e~v~~Ii~~E 78 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALRED-GYETI-MVNCNPETVS---TDYDTSDRLYFEPVTLEDVLEIVRIE 78 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHT-TCEEE-EECCCTTSST---TSTTSSSEEECCCCSHHHHHHHHHHH
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhc-CCeEE-EEecChhhhh---cChhhcCceEEccCCHHHHHHHHHHh
Confidence 458999999863 22346677777 78877 7788876543 1222210 012345666777778
Q ss_pred CCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHH
Q 018020 73 DIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFD 114 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~ 114 (362)
++|.|++..--..-..++...-+.|.+| ++.+++...
T Consensus 79 ~p~~ii~~~GGQtalnla~~L~~~gv~i-----LGt~~~~Id 115 (121)
T d1a9xa4 79 KPKGVIVQYGGQTPLKLARALEAAGVPV-----IGTSPDAID 115 (121)
T ss_dssp CCSEEECSSSTHHHHTTHHHHHHTTCCB-----CSSCHHHHH
T ss_pred CCCEEEeehhhhhHHHHHHHHHHcCCcE-----ECCCHHHHH
Confidence 9999999988888888888888999765 466665543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=91.67 E-value=0.11 Score=40.93 Aligned_cols=71 Identities=11% Similarity=0.097 Sum_probs=47.5
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc----CCCCCCcccCCHH---HHhcCCCCcEEEE
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN----NFPPDAKVYGSYE---ALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~---e~l~~~~~D~V~i 79 (362)
--+|.|.|+ |.+|...+..+.+. +.+|+ +++|++++.+..++++ ++.-...-..+.+ +.+. ++|+|+.
T Consensus 23 gK~vlItGasgGIG~~ia~~la~~-G~~V~-~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~iDilin 98 (191)
T d1luaa1 23 GKKAVVLAGTGPVGMRSAALLAGE-GAEVV-LCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVK--GAHFVFT 98 (191)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHT-TCEEE-EEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTT--TCSEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhh-ccchh-hcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhc--CcCeeee
Confidence 457888884 88999999999888 67765 7889998887776654 2210001123333 4444 5999887
Q ss_pred cCC
Q 018020 80 PLP 82 (362)
Q Consensus 80 ~~~ 82 (362)
+..
T Consensus 99 ~Ag 101 (191)
T d1luaa1 99 AGA 101 (191)
T ss_dssp CCC
T ss_pred cCc
Confidence 765
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=91.57 E-value=0.25 Score=38.37 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=47.7
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcC-----C-CcEEEEEEcCCH--HHHHHHHHHc-CC--C--CCCcccCCHHHHhcC
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLA-----P-NAVLSAVASRSL--EKATNFAKAN-NF--P--PDAKVYGSYEALLDD 71 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~-----~-~~~vv~v~d~~~--~~~~~~~~~~-~~--~--~~~~~~~~~~e~l~~ 71 (362)
.+++||.|+|+ |.+|...+..+..- . ..+ +-+.|.+. +.++..+-+. .. + ..+...++..+.+++
T Consensus 22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~-L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~ 100 (175)
T d7mdha1 22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED 100 (175)
T ss_dssp CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEE-EEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEE-EEEecCccccchhcchhhhhcccccccccCccccccchhhccC
Confidence 35799999996 99999887776532 1 233 33667644 3445444332 11 1 123456777788775
Q ss_pred CCCcEEEEcCCCc
Q 018020 72 KDIDAVYLPLPTS 84 (362)
Q Consensus 72 ~~~D~V~i~~~~~ 84 (362)
.|+|++.....
T Consensus 101 --aDvVvi~ag~~ 111 (175)
T d7mdha1 101 --VDWALLIGAKP 111 (175)
T ss_dssp --CSEEEECCCCC
T ss_pred --CceEEEeeccC
Confidence 99999976443
|
| >d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Methionyl-tRNAfmet formyltransferase species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.2 Score=39.98 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=54.7
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH-----------HHHHHHHHHcCCCCCC---cccCCHHHHhcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL-----------EKATNFAKANNFPPDA---KVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~-----------~~~~~~~~~~~~~~~~---~~~~~~~e~l~~~ 72 (362)
.+|||+++|.+..+...+..|.+. +.++++|+...+ .....++.+.+++... ..-+...+.++..
T Consensus 2 ~~mKI~f~G~~~~~~~~L~~L~~~-~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (206)
T d1fmta2 2 ESLRIIFAGTPDFAARHLDALLSS-GHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL 80 (206)
T ss_dssp CCCEEEEEECSHHHHHHHHHHHHT-TCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhC-CCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence 479999999999888888888766 689998884311 1234566767765100 0012234556666
Q ss_pred CCcEEEEcCCCcccHHHHHHH
Q 018020 73 DIDAVYLPLPTSMHVKWAISV 93 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~a 93 (362)
++|+++++.....-.+-+...
T Consensus 81 ~~d~~v~~~~~~ii~~~il~~ 101 (206)
T d1fmta2 81 QADVMVVVAYGLILPKAVLEM 101 (206)
T ss_dssp TCSEEEEESCCSCCCHHHHHS
T ss_pred cceEEEeeccccccchhhHhc
Confidence 899988887765444433333
|
| >d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein TM0796 species: Thermotoga maritima [TaxId: 2336]
Probab=91.53 E-value=0.26 Score=42.16 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=77.7
Q ss_pred eEEEEEeccHH----HHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-CCCCCCcccCCHHHHhcCCCCcEEEEcCCC
Q 018020 9 IRFGIIGAADI----ARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-NFPPDAKVYGSYEALLDDKDIDAVYLPLPT 83 (362)
Q Consensus 9 ~~v~iiG~G~~----g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~ 83 (362)
-+++|.=-|.+ |+.-.-.+|..+.+.+++|.|.. ..+...+.. ++..++.++.|+++.++. .++..+|..-+
T Consensus 11 ~~a~Il~~g~~~~~~gKTa~gLlRy~~~~~v~~V~~~~--aG~~~~~~l~g~~~~IPIv~s~~~A~~~-g~~~liiGvAp 87 (338)
T d2g0ta1 11 TPAAIVAWGQLGTAHAKTTYGLLRHSRLFKPVCVVAEH--EGKMASDFVKPVRYDVPVVSSVEKAKEM-GAEVLIIGVSN 87 (338)
T ss_dssp EEEEEECTTTTTSGGGHHHHHHHHHCSSEEEEEEESSC--TTCBGGGTCC-CCSCCBEESSHHHHHHT-TCCEEEECCCS
T ss_pred CCEEEEeCCCcCCCCchHhhhHHhccCCCeEEEEECCC--CCCchhhhcCCCCCCCCEeCCHHHHHhc-CCCEEEEEecc
Confidence 45555533443 44434445666667777665432 233333322 444566799999999986 78998887665
Q ss_pred c------ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 84 S------MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 84 ~------~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
. ...+.+.+|+++|.+|.. -+=.-+.+-.++.++|+++|+.++.
T Consensus 88 ~GG~lp~~w~~~i~~Al~~Gl~Ivs--GLH~~L~ddpel~~~A~~~g~~i~D 137 (338)
T d2g0ta1 88 PGGYLEEQIATLVKKALSLGMDVIS--GLHFKISQQTEFLKIAHENGTRIID 137 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEE--CCCC--CCHHHHHHHHHHHTCCEEE
T ss_pred cCCcCCHHHHHHHHHHHHcCCeEEe--cchhhhccCHHHHHHHHhCCCEEEE
Confidence 4 457889999999999997 3555677788899999999998874
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.22 E-value=0.046 Score=43.17 Aligned_cols=90 Identities=14% Similarity=0.064 Sum_probs=58.5
Q ss_pred EEEEEe-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcc--cCCHHHHhc---CCCCcEEEEcCCC
Q 018020 10 RFGIIG-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKV--YGSYEALLD---DKDIDAVYLPLPT 83 (362)
Q Consensus 10 ~v~iiG-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~e~l~---~~~~D~V~i~~~~ 83 (362)
.|.|.| +|.+|...++..+.. +++.+.+++.++++...++++.|... +.- -+++.+.+. ...+|+|+-++..
T Consensus 33 tVLI~gaaGgVG~~aiQlak~~-Ga~~vi~~~~~~e~~~~l~~~~gad~-vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg 110 (187)
T d1vj1a2 33 TMVVSGAAGACGSLAGQIGHLL-GCSRVVGICGTQEKCLFLTSELGFDA-AVNYKTGNVAEQLREACPGGVDVYFDNVGG 110 (187)
T ss_dssp EEEESSTTSTTGGGHHHHHHHT-TCSEEEEEESSHHHHHHHHHHSCCSE-EEETTSSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred EEEEECCCchhhHHHHHHHHHc-CCcceecccchHHHHhhhhhcccceE-EeeccchhHHHHHHHHhccCceEEEecCCc
Confidence 477777 588998888888777 55545555567777887888887430 011 134454433 3469999998874
Q ss_pred cccHHHHHHHHHcC-CeEEE
Q 018020 84 SMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 84 ~~h~~~~~~al~~g-k~V~~ 102 (362)
.+.+....+++.| +-|.+
T Consensus 111 -~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 111 -DISNTVISQMNENSHIILC 129 (187)
T ss_dssp -HHHHHHHTTEEEEEEEEEC
T ss_pred -hhHHHHhhhccccccEEEe
Confidence 5566777777666 44443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.21 E-value=0.62 Score=38.68 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=26.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEE
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVA 39 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~ 39 (362)
+|.||.|+|+ |.+|...++.|.+. +.+|+++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~-G~~V~~~~ 34 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISL-GHPTYVLF 34 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEE
Confidence 5788999995 99999999999887 68888664
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=91.13 E-value=0.17 Score=41.53 Aligned_cols=118 Identities=16% Similarity=0.156 Sum_probs=63.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-------CCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-------NFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
.-||.|||+|..|...+..|... ++.-+.++|.+.-....+-+++ |.+ + ..-+.+-|..-.+++-+..
T Consensus 30 ~~~VliiG~GglGs~va~~La~~-Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~---K-~~~a~~~l~~~np~~~i~~ 104 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLASA-GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQP---K-VESARDALTRINPHIAITP 104 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSB---H-HHHHHHHHHHHCTTSEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CCCeEEEECCcccchhhhhhhccccHhhcCch---H-HHHHHHHHHHhhcccchhh
Confidence 46899999999999999999877 5655667786442222222221 111 1 1122222322233433333
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
.+...-.+.....+ .+-.|+++ ...+.+.-..+-+.|.++++++..+...
T Consensus 105 ~~~~~~~~~~~~~~-~~~divid--~~d~~~~~~~in~~~~~~~ip~i~g~~~ 154 (247)
T d1jw9b_ 105 VNALLDDAELAALI-AEHDLVLD--CTDNVAVRNQLNAGCFAAKVPLVSGAAI 154 (247)
T ss_dssp ECSCCCHHHHHHHH-HTSSEEEE--CCSSHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred hhhhhhhccccccc-cccceeee--ccchhhhhhhHHHHHHHhCCCccccccc
Confidence 33322222233333 34455655 3345666667777888888887766443
|
| >d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I DAHP synthetase domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) species: Thermotoga maritima [TaxId: 2336]
Probab=91.10 E-value=0.2 Score=43.08 Aligned_cols=77 Identities=9% Similarity=0.063 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCCC--CCcccCCHHHHhcCCCCcEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Q 018020 45 KATNFAKANNFPP--DAKVYGSYEALLDDKDIDAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEE 122 (362)
Q Consensus 45 ~~~~~~~~~~~~~--~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 122 (362)
-.+++.+++|+|- ++.-....+.+.+. +|++-|+..+.....++.++.+.||+|++-|+...++++..-.++....
T Consensus 149 ~l~~~k~~~glpvvTdV~~~~~~~~~~e~--~DilQI~A~~~~n~~LL~~~g~t~kpV~lKkG~~~s~~e~l~aae~i~~ 226 (338)
T d1vr6a1 149 YLREAADKYGMYVVTEALGEDDLPKVAEY--ADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIAN 226 (338)
T ss_dssp HHHHHHHHHTCEEEEECSSGGGHHHHHHH--CSEEEECGGGTTCHHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCceeEEeccchhhhhhhhce--eeeEEechhhccCHHHHHHhhccCCcEEecCccccchhhhhhhHHHHHh
Confidence 3567788889861 11112334445554 8999999999999999999999999999999999999998776665554
Q ss_pred c
Q 018020 123 N 123 (362)
Q Consensus 123 ~ 123 (362)
.
T Consensus 227 ~ 227 (338)
T d1vr6a1 227 S 227 (338)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d1b74a1 c.78.2.1 (A:1-105) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/glutamate racemase family: Aspartate/glutamate racemase domain: Glutamate racemase species: Aquifex pyrophilus [TaxId: 2714]
Probab=90.89 E-value=0.63 Score=32.52 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=46.3
Q ss_pred eEEEEEeccHHHHHHHHHH-hcCCCcEEEEEEcC--------CHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 9 IRFGIIGAADIARKLSRAI-TLAPNAVLSAVASR--------SLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~-~~~~~~~vv~v~d~--------~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|||||.=.|.-|-..++.+ +..|+.+++.+.|. +++...++.. ..-+.|.+.++|+++|
T Consensus 1 mkIgifDSGiGGLtVl~~l~~~lP~~~~iY~~D~a~~PYG~ks~~~I~~~~~------------~~~~~l~~~~~~~iVi 68 (105)
T d1b74a1 1 MKIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSL------------ECAGFLKDKGVDIIVV 68 (105)
T ss_dssp CEEEEEESSSTHHHHHHHHHHHSSSCEEEEEECGGGCCGGGSCHHHHHHHHH------------HHHHHHHTTTCSEEEE
T ss_pred CEEEEEeCCCCHHHHHHHHHHHCCCCCEEEEecCCCCCCCCCCHHHHHHHHH------------HHHHHHHHcCCCEEEE
Confidence 6799998887677777777 46799999999984 3333333322 2234455568999999
Q ss_pred cCCCccc
Q 018020 80 PLPTSMH 86 (362)
Q Consensus 80 ~~~~~~h 86 (362)
++.+..-
T Consensus 69 ACNTaS~ 75 (105)
T d1b74a1 69 ACNTASA 75 (105)
T ss_dssp CCHHHHH
T ss_pred ecCcHHH
Confidence 9887653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=90.80 E-value=0.078 Score=45.76 Aligned_cols=110 Identities=13% Similarity=0.188 Sum_probs=61.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCCCcEEEEcCCCc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP---PDAKVYGSYEALLDDKDIDAVYLPLPTS 84 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~~D~V~i~~~~~ 84 (362)
|||.|+|+ |++|...+..|.+.+..+|+++ |+...+...+.+.-++. -+..-..++.+.+.. ++|+|+-+.-..
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~l-d~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~-~~d~Vih~a~~~ 78 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGL-DIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVK-KCDVVLPLVAIA 78 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEE-ESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHH-HCSEEEECBCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEE-eCCCcchhhhccCCCeEEEECccCChHHHHHHHHh-CCCccccccccc
Confidence 58999996 8899999999877766787766 44333222221111100 011122333443322 589888654443
Q ss_pred ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 85 MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 85 ~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.+......-.+ + +..++.....+++.+.+.+.+...
T Consensus 79 ~~~~~~~~~~~------~---~~~nv~gt~~ll~~~~~~~~~~~~ 114 (342)
T d2blla1 79 TPIEYTRNPLR------V---FELDFEENLRIIRYCVKYRKRIIF 114 (342)
T ss_dssp CHHHHHHSHHH------H---HHHHTHHHHHHHHHHHHTTCEEEE
T ss_pred cccccccCCcc------c---cccccccccccccccccccccccc
Confidence 32222211000 0 224577788899999988887655
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=90.46 E-value=0.67 Score=37.81 Aligned_cols=113 Identities=17% Similarity=0.137 Sum_probs=69.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHH-----------HHHHHHcCCCCCCcccCCHH
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKA-----------TNFAKANNFPPDAKVYGSYE 66 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~-----------~~~~~~~~~~~~~~~~~~~~ 66 (362)
-.+|+|=|+|..|...++.|.+. +.+|+++.|.+ .+.. ..+...+ ++.....+.+
T Consensus 31 g~~v~IqGfGnVG~~~a~~L~~~-Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 106 (242)
T d1v9la1 31 GKTVAIQGMGNVGRWTAYWLEKM-GAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTK---DNAEFVKNPD 106 (242)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTT-TCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHT---SCCCCCSSTT
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhc---cCceEeeCcc
Confidence 46999999999999999999888 79999999853 1211 1222222 2234566778
Q ss_pred HHhcCCCCcEEEEcCCC-cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 67 ALLDDKDIDAVYLPLPT-SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~~-~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
++++. ++|+.+-|... ..+.+.+.. + ...+++|=-=.....++.+ ..+++|+.+..++
T Consensus 107 ~i~~~-~~DIliPcA~~~~I~~~~a~~-i--~ak~IvegAN~p~t~~a~~---~L~~rgI~~~PD~ 165 (242)
T d1v9la1 107 AIFKL-DVDIFVPAAIENVIRGDNAGL-V--KARLVVEGANGPTTPEAER---ILYERGVVVVPDI 165 (242)
T ss_dssp GGGGC-CCSEEEECSCSSCBCTTTTTT-C--CCSEEECCSSSCBCHHHHH---HHHTTTCEEECHH
T ss_pred hhccc-cccEEeecchhccccHHHHHh-c--ccCEEEecCCCCCChhHHH---HHHhCCeEEeCch
Confidence 88874 79999976543 333333322 2 3457777521222233433 3456777766543
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=2.2 Score=30.99 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=68.1
Q ss_pred eeEEEEEeccHHHHHH-HHHHhcCCCcEEEEEEcCCHHHHHHHHHH-c-------CCCCCCcccCCHHHHhcC-CCCcEE
Q 018020 8 AIRFGIIGAADIARKL-SRAITLAPNAVLSAVASRSLEKATNFAKA-N-------NFPPDAKVYGSYEALLDD-KDIDAV 77 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~-~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-~-------~~~~~~~~~~~~~e~l~~-~~~D~V 77 (362)
|+||.||=--..-... ...+...+++.+++.++.-.+..+.+.+. + .. |+..-++-++++-+. ++..++
T Consensus 2 Pi~VLiVDD~~~~r~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~~~DlvllD~~m-P~~~G~el~~~ir~~~~~~~vi 80 (138)
T d1a04a2 2 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNM-PGMNGLETLDKLREKSLSGRIV 80 (138)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTS-TTSCHHHHHHHHHHSCCCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEecCC-CCCCHHHHHHHHHhhCCCCCEE
Confidence 7899999887764444 44455667788888887655545444332 1 11 222223333344332 445555
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEEN 123 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~ 123 (362)
++++. ...+.+.+|+++|-.=|+-||+ +.++..+.++.+-+.
T Consensus 81 vlt~~--~~~~~~~~a~~~Ga~~yl~Kp~--~~~~L~~~i~~v~~g 122 (138)
T d1a04a2 81 VFSVS--NHEEDVVTALKRGADGYLLKDM--EPEDLLKALHQAAAG 122 (138)
T ss_dssp EEECC--CCHHHHHHHHHTTCSEEEETTC--CHHHHHHHHHHHHHS
T ss_pred EEEEE--CCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHHHCC
Confidence 55543 3557788999999999999996 666666666655443
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.16 E-value=0.58 Score=39.27 Aligned_cols=117 Identities=14% Similarity=0.099 Sum_probs=73.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCCCCC-CcccCCHHHHhcCCCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNFPPD-AKVYGSYEALLDDKDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~~~~-~~~~~~~~e~l~~~~~D 75 (362)
+..+|+|=|+|..|...+..+.+. +++|++|.|. +.+.+.....+.+.-.+ ....-+.++++.. ++|
T Consensus 35 ~gktvaIqGfGnVG~~~A~~L~e~-Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D 112 (293)
T d1hwxa1 35 GDKTFAVQGFGNVGLHSMRYLHRF-GAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEV-DCD 112 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGC-CCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccC-Ccc
Confidence 346899999999999999999887 8999999874 55666666665442100 0112234566664 799
Q ss_pred EEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 76 AVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 76 ~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
+++-| +.+.-+.+-+.. -+..+++|--=.....++. +..+++|+.+..++
T Consensus 113 IliPaA~~~~I~~~~a~~---l~ak~I~EgAN~P~t~eA~---~~L~~~gI~viPD~ 163 (293)
T d1hwxa1 113 ILIPAASEKQLTKSNAPR---VKAKIIAEGANGPTTPQAD---KIFLERNIMVIPDL 163 (293)
T ss_dssp EEEECSSSSCBCTTTGGG---CCCSEEECCSSSCBCHHHH---HHHHHTTCEEECHH
T ss_pred EEeeccccccccHHHHHH---HhhCEEeccCCCCCCcchH---HHHHHCCCEEeChh
Confidence 99975 344444443332 2566888862222223443 34567888776543
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=90.00 E-value=0.52 Score=38.47 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=53.9
Q ss_pred CcccCCHHHHhcCCCCcEEEEcCCCcccHH-HHHHHHHcC--CeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 59 AKVYGSYEALLDDKDIDAVYLPLPTSMHVK-WAISVAQKK--KHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 59 ~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~-~~~~al~~g--k~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
+.+.+|..|.+++ .|+|++++|...+.. ++...++.- ..++++.- +.+....+++.+.++++++.++-+++.
T Consensus 129 v~v~~d~~Eav~~--ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~S-Ti~~~~~~~l~e~l~~kgi~vi~~hp~ 203 (242)
T d2b0ja2 129 LKVTSDDREAVEG--ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHAC-TIPTTKFAKIFKDLGREDLNITSYHPG 203 (242)
T ss_dssp CEEESCHHHHHTT--CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECS-SSCHHHHHHHHHHTTCTTSEEEECBCS
T ss_pred CEEECCHHHHHhc--CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecC-CCcHHHHHHHHHhcccCCCEEECCCcc
Confidence 4567999999986 999999999887754 554444433 34888754 567899999999999999887655443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=89.87 E-value=0.11 Score=40.11 Aligned_cols=83 Identities=14% Similarity=0.039 Sum_probs=51.2
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHH-HhcCCCCcEEEEcCCCccc
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEA-LLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~~~~~D~V~i~~~~~~h 86 (362)
-+|.|.|+ |.+|...++.++.. +++++++++ ++++.+ +++++|... +.-|.+..+ +-+...+|+|+-++.. .
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~-~~~~~~-~~~~lGa~~-~i~~~~~~~~~~~~~g~D~v~d~~G~--~ 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAM-GLRVLAAAS-RPEKLA-LPLALGAEE-AATYAEVPERAKAWGGLDLVLEVRGK--E 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHT-TCEEEEEES-SGGGSH-HHHHTTCSE-EEEGGGHHHHHHHTTSEEEEEECSCT--T
T ss_pred CEEEEEeccccchhhhhhhhccc-ccccccccc-cccccc-cccccccce-eeehhhhhhhhhccccccccccccch--h
Confidence 46888895 88999888888877 788887664 455444 456777531 111333322 2233568888877653 2
Q ss_pred HHHHHHHHHcC
Q 018020 87 VKWAISVAQKK 97 (362)
Q Consensus 87 ~~~~~~al~~g 97 (362)
.+.+..+++.|
T Consensus 103 ~~~~~~~l~~~ 113 (171)
T d1iz0a2 103 VEESLGLLAHG 113 (171)
T ss_dssp HHHHHTTEEEE
T ss_pred HHHHHHHHhcC
Confidence 44555666555
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=89.85 E-value=1.2 Score=34.10 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCC--cccCCHHHH---hcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDA--KVYGSYEAL---LDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~~e~---l~~~~~D~V~i~~~ 82 (362)
=+|.|.|+ |..|...++..+.. ++++++++ +++++. ++.+++|...-+ .-.+..+++ .....+|+|+-++.
T Consensus 31 ~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~-~~~~~~-~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 31 ETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAA-GSDEKI-AYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT-TCEEEEEE-SSHHHH-HHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CEEEEEeCCCchhHHHHHHHHcc-CCEEEEeC-CCHHHH-HHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 46788898 55677777777766 78988777 455654 455666643100 011222333 34467999999997
Q ss_pred CcccHHHHHHHHHcCCeEE
Q 018020 83 TSMHVKWAISVAQKKKHLL 101 (362)
Q Consensus 83 ~~~h~~~~~~al~~gk~V~ 101 (362)
..+.+....+++.|-.++
T Consensus 108 -~~~~~~~~~~l~~~G~~v 125 (182)
T d1v3va2 108 -GEFLNTVLSQMKDFGKIA 125 (182)
T ss_dssp -HHHHHHHGGGEEEEEEEE
T ss_pred -chhhhhhhhhccCCCeEE
Confidence 467778888887764433
|
| >d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Class I glutamine amidotransferase-like family: Class I glutamine amidotransferases (GAT) domain: Hypothetical protein YaaE species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.75 E-value=0.58 Score=36.93 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=22.4
Q ss_pred CceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEE
Q 018020 6 QAAIRFGIIGA-ADIARKLSRAITLAPNAVLSAV 38 (362)
Q Consensus 6 ~~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v 38 (362)
+++||||||-+ |+. ..+++++++. +++.+-+
T Consensus 4 ~~~mkIgii~~~Gn~-~s~~~al~~~-G~~~~~v 35 (202)
T d1q7ra_ 4 QSNMKIGVLGLQGAV-REHVRAIEAC-GAEAVIV 35 (202)
T ss_dssp CCCCEEEEESCGGGC-HHHHHHHHHT-TCEEEEE
T ss_pred ccCCEEEEEECCCCH-HHHHHHHHHC-CCcEEEE
Confidence 45899999988 654 4677888877 6665543
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.74 E-value=0.47 Score=36.01 Aligned_cols=113 Identities=15% Similarity=0.124 Sum_probs=62.4
Q ss_pred eEEEEEeccH-HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC------C----CC---CcccCCHHHHhcCCCC
Q 018020 9 IRFGIIGAAD-IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF------P----PD---AKVYGSYEALLDDKDI 74 (362)
Q Consensus 9 ~~v~iiG~G~-~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~------~----~~---~~~~~~~~e~l~~~~~ 74 (362)
-||+||+.+. .|.-.+..+... ++++ ...+++..+++.+...- | .+ -.....++.+++++++
T Consensus 4 ~rvaiit~sGG~~~l~aD~~~~~-Gl~l---~~l~~~t~~~L~~~lp~~~~~~NPlD~~~~~~~~~~~~~l~~~~~d~~v 79 (163)
T d2csua3 4 NKVAIMTNAGGPGVLTADELDKR-GLKL---ATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNV 79 (163)
T ss_dssp SEEEEEESCHHHHHHHHHHHHTT-TCEE---CCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTC
T ss_pred CeEEEEECChHHHHHHHHHHHHc-CCcc---CCCCHHHHHHHHHhCCCcccCCCcccccCCCCHHHHHHHHHHHHcCCCc
Confidence 4799999854 455567777766 6775 46677777777665420 0 00 0112335566778999
Q ss_pred cEEEE-cCCCc-------ccHHHHHHHHH-c--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Q 018020 75 DAVYL-PLPTS-------MHVKWAISVAQ-K--KKHLLMEKPMALNVAEFDVILNACEENGVQLM 128 (362)
Q Consensus 75 D~V~i-~~~~~-------~h~~~~~~al~-~--gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 128 (362)
|+|++ ..++. ...+.+..+++ . .|+|++--.-....+ +..+..+++|++++
T Consensus 80 d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpv~~~~~~~~~~~---~~~~~l~~~Gip~f 141 (163)
T d2csua3 80 DMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSE---KAKELLEKNGIPTY 141 (163)
T ss_dssp SEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTH---HHHHHHHTTTCCEE
T ss_pred CEEEEeeccCCcccccHHHHHHHHHHHHHHhcCCCcEEEEECCCCChH---HHHHHHHHCCCCcC
Confidence 98765 22111 12333444443 2 367764322223333 44455667888876
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=89.31 E-value=0.55 Score=40.24 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=27.1
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEE
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVA 39 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~ 39 (362)
++-+|.|+|+ |++|...++.|.+. +.+|++++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~-G~~V~~l~ 34 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQV 34 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHHhC-CCeEEEEE
Confidence 4678999995 99999999999876 78888776
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=89.29 E-value=0.17 Score=41.96 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=41.7
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLP 82 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~ 82 (362)
|||.|+|+ |++|+..++.|.+. +.+|+++ |++. .++ .-+.+++++++..++|+|+-+.-
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~-g~~Vi~~-~r~~---------~D~----~d~~~~~~~l~~~~~d~vih~a~ 61 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGK-NVEVIPT-DVQD---------LDI----TNVLAVNKFFNEKKPNVVINCAA 61 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTS-SEEEEEE-CTTT---------CCT----TCHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-CCEEEEe-echh---------ccC----CCHHHHHHHHHHcCCCEEEeecc
Confidence 78999997 99999999999876 7888764 5431 122 22345567777667898886543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.81 E-value=0.79 Score=37.90 Aligned_cols=112 Identities=16% Similarity=0.139 Sum_probs=72.5
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc-----CCCCCCc-ccCCHHHH-hcCCCCcEEEEcC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN-----NFPPDAK-VYGSYEAL-LDDKDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~-----~~~~~~~-~~~~~~e~-l~~~~~D~V~i~~ 81 (362)
.+|.=+|||+-+..+.-+-.--|+-+|. .+|.+++.++...+.+ +...+.. ...|+.+. +.+..+|+|++-.
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vgp~G~V~-~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fDaV~ldl 176 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVGPAGQVI-SYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVLDM 176 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHCTTSEEE-EECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEEES
T ss_pred CEEEecCcCCcHHHHHHHHhhCCCcEEE-EecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcceEEEec
Confidence 6888899987333322222223556655 5789988776554422 1111111 23455554 4566899999988
Q ss_pred CCc-ccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 82 PTS-MHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 82 ~~~-~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
|.+ ...+.+.++|+.|-.+.| ++.+.++..++.+..+..+
T Consensus 177 p~P~~~l~~~~~~LkpGG~lv~---~~P~i~Qv~~~~~~l~~~~ 217 (264)
T d1i9ga_ 177 LAPWEVLDAVSRLLVAGGVLMV---YVATVTQLSRIVEALRAKQ 217 (264)
T ss_dssp SCGGGGHHHHHHHEEEEEEEEE---EESSHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhccCCCCEEEE---EeCccChHHHHHHHHHHcC
Confidence 875 567778899999977776 4558999999999887554
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.67 E-value=0.34 Score=36.26 Aligned_cols=32 Identities=16% Similarity=0.201 Sum_probs=26.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEE
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVA 39 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~ 39 (362)
+.-||.|||.|.+|...+..+.+. +++|+-|.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~-GA~VtVva 43 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPT-GCKLTLVS 43 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGG-TCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEe
Confidence 346899999999999999999887 67777554
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=88.64 E-value=0.35 Score=40.80 Aligned_cols=106 Identities=17% Similarity=0.113 Sum_probs=63.1
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCccc
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMH 86 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h 86 (362)
+-||.|.|+ |++|+..+..|.+.+ ..++. .+... +.++ .-....+++++...+|.|+.+.....+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g-~~vi~-~~~~~--------~~~~----~~~~~~~~~~~~~~~d~v~~~a~~~~~ 67 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG-DVELV-LRTRD--------ELNL----LDSRAVHDFFASERIDQVYLAAAKVGG 67 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-TEEEE-CCCTT--------TCCT----TCHHHHHHHHHHHCCSEEEECCCCCCC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc-CEEEE-ecCch--------hccc----cCHHHHHHHHhhcCCCEEEEcchhccc
Confidence 459999996 899999999998774 44453 33321 1232 223456677777779999876543322
Q ss_pred HHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCC--EEEEeeeccc
Q 018020 87 VKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGV--QLMDGTMWVH 135 (362)
Q Consensus 87 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~--~~~v~~~~r~ 135 (362)
...... ...-+ +..++.....|+++|++.++ .++++...-|
T Consensus 68 ~~~~~~----~~~~~----~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vy 110 (315)
T d1e6ua_ 68 IVANNT----YPADF----IYQNMMIESNIIHAAHQNDVNKLLFLGSSCIY 110 (315)
T ss_dssp HHHHHH----CHHHH----HHHHHHHHHHHHHHHHHTTCCEEEEECCGGGS
T ss_pred cccchh----hHHHH----HHHHHHHHHHHHHHHHHcCCCEEEEECCceEc
Confidence 211100 00000 12367888899999999886 4455544433
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=88.30 E-value=0.44 Score=36.98 Aligned_cols=45 Identities=9% Similarity=0.037 Sum_probs=37.0
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
+-||.|||+|..|..-+.....+ ++++. ++|.++++.+.+.+.++
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~l-GA~V~-v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRL-GAVVM-ATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSCSTTHHHHHHTTC
T ss_pred CcEEEEEcCcHHHHHHHHHHHHc-CCEEE-EEeccHHHHHHHHHhhc
Confidence 56999999999999888888888 67644 89999888888876654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.15 E-value=0.25 Score=39.98 Aligned_cols=110 Identities=13% Similarity=0.044 Sum_probs=57.9
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~~~ 83 (362)
+..+|.|.|+ |.+|+..++.|.+.+.+ +|.++. |++.....-.. ..+.-...-+++++++.+. .++|+|+.+...
T Consensus 13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~-R~~~~~~~~~~-~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~ 90 (232)
T d2bkaa1 13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIG-RRKLTFDEEAY-KNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 90 (232)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEE-SSCCCCCSGGG-GGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEe-cChhhhccccc-ceeeeeeecccccccccccccccccccccccc
Confidence 4578999996 99999999988776554 666554 43321111000 0111000012333344322 458999987654
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
..+..--.... ..+..-...+.+.|++.++..++-
T Consensus 91 ~~~~~~~~~~~------------~~~~~~~~~~~~~a~~~~v~~fi~ 125 (232)
T d2bkaa1 91 TRGKAGAEGFV------------RVDRDYVLKSAELAKAGGCKHFNL 125 (232)
T ss_dssp CHHHHHHHHHH------------HHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred cccccchhhhh------------hhcccccceeeecccccCcccccc
Confidence 33222111111 113445666788888888764433
|
| >d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.01 E-value=0.62 Score=31.57 Aligned_cols=72 Identities=11% Similarity=0.034 Sum_probs=42.6
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcCCCcccHH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPLPTSMHVK 88 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~~~~~h~~ 88 (362)
|||.|||.|...+..+..+.+.+. + +.++.-|+-.. .++.. .-++...++....++|+|+|....+...-
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~-~-v~~~pGN~G~~-----~~~~~---~~~~~~~~~~~~~~idlviIGPE~pL~~G 70 (90)
T d1vkza2 1 VRVHILGSGGREHAIGWAFAKQGY-E-VHFYPGNAGTK-----RDGTN---HPYEGEKTLKAIPEEDIVIPGSEEFLVEG 70 (90)
T ss_dssp CEEEEEECSHHHHHHHHHHHHTTC-E-EEEEECCTTGG-----GTSEE---CCCCTHHHHHTSCSSCEECCSSGGGTCC-
T ss_pred CEEEEECCCHHHHHHHHHHhcCCC-e-EEEecCCcccc-----cccee---ccchhhHHHHHhccceeEEEChHHHHHHH
Confidence 799999999766666667766653 4 44554343211 11110 23567777777788999988765444443
Q ss_pred HH
Q 018020 89 WA 90 (362)
Q Consensus 89 ~~ 90 (362)
++
T Consensus 71 i~ 72 (90)
T d1vkza2 71 VS 72 (90)
T ss_dssp --
T ss_pred HH
Confidence 33
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=0.49 Score=42.15 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=26.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
..||.|||+|.+|...+..|... ++.-+.++|.
T Consensus 37 ~~kVlvvG~GglG~ei~k~L~~~-Gvg~i~lvD~ 69 (426)
T d1yovb1 37 TCKVLVIGAGGLGCELLKNLALS-GFRQIHVIDM 69 (426)
T ss_dssp HCCEEEECSSTTHHHHHHHHHTT-TCCCEEEECC
T ss_pred cCeEEEECCCHHHHHHHHHHHHc-CCCeEEEEEC
Confidence 46999999999999999999866 5544457775
|
| >d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Sporulation response regulator Spo0A species: Bacillus stearothermophilus [TaxId: 1422]
Probab=87.37 E-value=2 Score=30.52 Aligned_cols=99 Identities=11% Similarity=0.106 Sum_probs=56.5
Q ss_pred eEEEEEeccHHHHH-HHHHHhcCCCcEEEEEEcCCHHHHHHHHHH-cCC------CCCCcccCCHHHHhcCC--CCcEEE
Q 018020 9 IRFGIIGAADIARK-LSRAITLAPNAVLSAVASRSLEKATNFAKA-NNF------PPDAKVYGSYEALLDDK--DIDAVY 78 (362)
Q Consensus 9 ~~v~iiG~G~~g~~-~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~-~~~------~~~~~~~~~~~e~l~~~--~~D~V~ 78 (362)
|||.||=--..-.. ....+...+++++++.+..-.+..+.+.+. +++ -|+..-++-.+++-+.. .+-+++
T Consensus 2 irILivDD~~~~~~~l~~~L~~~~~~~~v~~a~~g~~al~~~~~~~~dlillD~~mP~~dG~e~~~~ir~~~~~~~~ii~ 81 (123)
T d1dz3a_ 2 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIM 81 (123)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCeEEE
Confidence 78888876554443 445566677788888776555555555443 111 02222222233332222 222333
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEeCCCCCC
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLMEKPMALN 109 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~ 109 (362)
++ .........+|+++|-.=|+.||+...
T Consensus 82 ~t--~~~~~~~~~~a~~~Ga~~~l~KP~~~~ 110 (123)
T d1dz3a_ 82 LT--AFGQEDVTKKAVELGASYFILKPFDME 110 (123)
T ss_dssp EE--ETTCHHHHHHHHHTTCEEEEECSSCCT
T ss_pred EE--CcCCHHHHHHHHHCCCCEEEECCCCHH
Confidence 33 334566788999999999999998553
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.18 E-value=0.3 Score=42.26 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=57.6
Q ss_pred ceeEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCH-HHHHHHHHHcCCCCCCcccCCHHHHhc-CCCCcEEEEcCCC
Q 018020 7 AAIRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSL-EKATNFAKANNFPPDAKVYGSYEALLD-DKDIDAVYLPLPT 83 (362)
Q Consensus 7 ~~~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~-~~~~D~V~i~~~~ 83 (362)
+.|||.|.|+ |++|...++.|.+. +.+|+++ |+.. +.... ......-...-..+.++++. ..++|.|+.+...
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~-g~~V~~~-d~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~ 89 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHE-GHYVIAS-DWKKNEHMTE--DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAAD 89 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ESSCCSSSCG--GGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEE-eCCCccchhh--hcccCcEEEeechhHHHHHHHhhcCCeEeecccc
Confidence 5799999995 99999999998876 6787754 4321 11000 00010000000124444432 1368988876544
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQ 126 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~ 126 (362)
..+...... .+-. -...+......+++++++++++
T Consensus 90 ~~~~~~~~~-----~~~~---~~~~n~~gt~~ll~~~~~~~vk 124 (363)
T d2c5aa1 90 MGGMGFIQS-----NHSV---IMYNNTMISFNMIEAARINGIK 124 (363)
T ss_dssp CCCHHHHTT-----CHHH---HHHHHHHHHHHHHHHHHHTTCS
T ss_pred ccccccccc-----cccc---ccccccchhhHHHHhHHhhCcc
Confidence 333211100 0000 0123667788899999998874
|
| >d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Sinorhizobium meliloti, CheY2 [TaxId: 382]
Probab=87.06 E-value=3.4 Score=29.47 Aligned_cols=109 Identities=15% Similarity=0.164 Sum_probs=58.5
Q ss_pred CceeEEEEEeccHHHHHHHH-HHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------CCCcccCCHHHHhcCC-CCc
Q 018020 6 QAAIRFGIIGAADIARKLSR-AITLAPNAVLSAVASRSLEKATNFAKANNFP--------PDAKVYGSYEALLDDK-DID 75 (362)
Q Consensus 6 ~~~~~v~iiG~G~~g~~~~~-~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~e~l~~~-~~D 75 (362)
.+++||.||=--..-...+. .|... ++..+..++ +.+.+..+.++.... |+...++=.+++=+.+ ..+
T Consensus 4 ~~~~kILiVDD~~~~~~~l~~~L~~~-g~~~v~~a~-~~~~al~~l~~~~~dlii~D~~mP~~~G~el~~~lr~~~~~~~ 81 (129)
T d1p6qa_ 4 AEKIKVLIVDDQVTSRLLLGDALQQL-GFKQITAAG-DGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTT-TCSCEECCS-SHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTT
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHC-CCeEEEEEC-CHHHHHHHHHhCCCCeEEeeeecCCCChHHHHHHHHhCcccCC
Confidence 36899999987765555444 44444 664343443 444454454543211 1111111112221221 223
Q ss_pred EEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 76 AVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 76 ~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
+-+|........+...+|++.|.+=|+-||+ +.++..+.++
T Consensus 82 ~pii~lt~~~~~~~~~~a~~~G~~~~l~KP~--~~~~L~~~i~ 122 (129)
T d1p6qa_ 82 AAFIILTAQGDRALVQKAAALGANNVLAKPF--TIEKMKAAIE 122 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCS--SHHHHHHHHH
T ss_pred CeEEEEEecCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHH
Confidence 4333333455678888999999999999997 4555544444
|
| >d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Probable two-component system transcriptional regulator Rv1626 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.93 E-value=1.8 Score=33.42 Aligned_cols=106 Identities=9% Similarity=0.026 Sum_probs=65.5
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------CCCcccCCHHHHhcCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP--------PDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
|+||.||=--..-...+..+....++++++.++...+..+.+ ++.... |+-.-++=...+-+...+.++++
T Consensus 3 p~kILiVDD~~~~r~~l~~~L~~~g~~vv~~a~~g~eal~~~-~~~~pDlvllDi~mP~~dG~e~~~~ir~~~~~pIi~l 81 (190)
T d1s8na_ 3 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELA-ELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVL 81 (190)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hcCCCCEEEEeccccCcchHHHHHHHHhcCCCCEEEE
Confidence 789999988876555555443445899998887655555544 443211 22222233334444455665554
Q ss_pred cCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 80 PLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 80 ~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
. ...-.+.+.+|+++|..=|+-||+ +.++....+.
T Consensus 82 T--a~~~~~~~~~al~~Ga~~yl~KP~--~~~~L~~~i~ 116 (190)
T d1s8na_ 82 T--AFSQRDLVERARDAGAMAYLVKPF--SISDLIPAIE 116 (190)
T ss_dssp E--EGGGHHHHHTTGGGSCEEEEEESC--CHHHHHHHHH
T ss_pred e--CCCCHHHHHHHHHcCCCEeccCCC--CHHHHHHHHH
Confidence 4 445568889999999999999997 5555444443
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.93 E-value=2.4 Score=34.05 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=75.0
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC----------CHHHHHHHHHHcCCC---CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASR----------SLEKATNFAKANNFP---PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~----------~~~~~~~~~~~~~~~---~~~~~~~~~~e~l~~~~ 73 (362)
+..||+|=|+|..|...++.|.+..+..++++.|. +.+....+.++.+.. ++. -+-+.++++.. +
T Consensus 30 ~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 107 (234)
T d1b26a1 30 KKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKG-ERITNEELLEL-D 107 (234)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSC-EEECHHHHHTS-C
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccc-eeecccccccc-c
Confidence 46799999999999988888854338899998874 556666666666532 111 12356788875 7
Q ss_pred CcEEEEc-CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeec
Q 018020 74 IDAVYLP-LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGTMW 133 (362)
Q Consensus 74 ~D~V~i~-~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~ 133 (362)
+|+++-| +.+.-+.+-+.. + ...+++|--=.....++. +...++|+.+...+-.
T Consensus 108 ~DI~~PcA~~~~I~~~~a~~-l--~~~~I~e~AN~p~t~~a~---~~L~~rgI~~~PD~~a 162 (234)
T d1b26a1 108 VDILVPAALEGAIHAGNAER-I--KAKAVVEGANGPTTPEAD---EILSRRGILVVPDILA 162 (234)
T ss_dssp CSEEEECSCTTCBCHHHHTT-C--CCSEEECCSSSCBCHHHH---HHHHHTTCEEECHHHH
T ss_pred cceeecchhcccccHHHHHH-h--hhceEeecCCCCCCHHHH---HHHHHCCeEEechHHh
Confidence 9999876 444455554444 2 346788751111122344 3456788887655433
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=86.78 E-value=0.42 Score=34.75 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=58.6
Q ss_pred ceeEEEEEeccHH--H---------HHHHHHHhcCCCcEEEEEEcCCHHHHHH---HHHHcCCCCCCcccCCHHHHhcCC
Q 018020 7 AAIRFGIIGAADI--A---------RKLSRAITLAPNAVLSAVASRSLEKATN---FAKANNFPPDAKVYGSYEALLDDK 72 (362)
Q Consensus 7 ~~~~v~iiG~G~~--g---------~~~~~~~~~~~~~~vv~v~d~~~~~~~~---~~~~~~~~~~~~~~~~~~e~l~~~ 72 (362)
..-||.|||+|.. | ...+.+|++. +++.+ +++.|++.... .+++.=+. +.-.++..++++.+
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~-g~~~i-liN~NP~TVstd~d~aD~lYfe--Plt~e~v~~Ii~~E 81 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREE-GYRVI-NVNSNPATIMTDPEMADATYIE--PIHWEVVRKIIEKE 81 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH-TCEEE-EECSCTTCGGGCGGGSSEEECS--CCCHHHHHHHHHHH
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHc-CCeEE-EecCchHhhhcChhhcceeeee--cCCHHHHHHHHHHh
Confidence 3568999999863 2 2346677776 78866 77888765321 11211111 13346777888888
Q ss_pred CCcEEEEcCCCcccHHHHHHHHHcC
Q 018020 73 DIDAVYLPLPTSMHVKWAISVAQKK 97 (362)
Q Consensus 73 ~~D~V~i~~~~~~h~~~~~~al~~g 97 (362)
++|.|+.......-..++.+..++|
T Consensus 82 ~pd~il~~~GGQtalnla~~L~~~g 106 (127)
T d1a9xa3 82 RPDAVLPTMGGQTALNCALELERQG 106 (127)
T ss_dssp CCSEEECSSSHHHHHHHHHHHHHTT
T ss_pred CcCCeEEEeeeehHhHHHHHHHHcC
Confidence 9999998888888888888887765
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.74 E-value=2 Score=34.75 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=70.4
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC----------HHHHHHHHHHcC-CC--CCCcccCCHHHHhcCCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS----------LEKATNFAKANN-FP--PDAKVYGSYEALLDDKD 73 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~----------~~~~~~~~~~~~-~~--~~~~~~~~~~e~l~~~~ 73 (362)
+..+|+|-|+|..|...++.|.+..+..++++.|.+ .+...+...+.+ +. ++.. .-+.++++.. +
T Consensus 31 ~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~i~~~-~ 108 (239)
T d1gtma1 31 KGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGAT-NITNEELLEL-E 108 (239)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSE-EECHHHHHHS-C
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCe-eecccccccc-c
Confidence 357899999999999989888655589999999863 344444444432 11 1222 3366888875 7
Q ss_pred CcEEEEcCC-CcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEe
Q 018020 74 IDAVYLPLP-TSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDG 130 (362)
Q Consensus 74 ~D~V~i~~~-~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 130 (362)
+|+++-|.- ..-+.+-+.. -...+++|=-=.....++. +...++|+.+...
T Consensus 109 ~DIl~PcA~~~~I~~~~a~~---i~ak~I~e~AN~p~t~ea~---~~L~~rgI~~iPD 160 (239)
T d1gtma1 109 VDVLAPAAIEEVITKKNADN---IKAKIVAEVANGPVTPEAD---EILFEKGILQIPD 160 (239)
T ss_dssp CSEEEECSCSCCBCTTGGGG---CCCSEEECCSSSCBCHHHH---HHHHHTTCEEECH
T ss_pred ccEEeeccccccccHHHHHh---ccccEEEecCCCCCCHHHH---HHHHHCCCEEecc
Confidence 999997644 3344443332 2446777752111122343 3356677776544
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.65 E-value=0.72 Score=36.30 Aligned_cols=102 Identities=19% Similarity=0.124 Sum_probs=57.5
Q ss_pred eeEEEEEec-cHHHHHHHHHHhcCCCc-EEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC--CCCcEEEEcCCC
Q 018020 8 AIRFGIIGA-ADIARKLSRAITLAPNA-VLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD--KDIDAVYLPLPT 83 (362)
Q Consensus 8 ~~~v~iiG~-G~~g~~~~~~~~~~~~~-~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~--~~~D~V~i~~~~ 83 (362)
+-||.|+|+ |++|+..++.|.+.+.. +|+. ..|++.. ..+.-.....++.++++. ..+|.|+.+...
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~-~~r~~~~--------~~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~ 72 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIA-PARKALA--------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLGT 72 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEEC-CBSSCCC--------CCTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEE-EeCCchh--------hcccccccccchhhhhhccccchheeeeeeee
Confidence 458999997 99999999998888764 5553 3343210 111001235567666543 468999987643
Q ss_pred cccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Q 018020 84 SMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMD 129 (362)
Q Consensus 84 ~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v 129 (362)
.....-..... ...+......+.++|+++++..++
T Consensus 73 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~a~~~~v~~~i 107 (212)
T d2a35a1 73 TIKEAGSEEAF-----------RAVDFDLPLAVGKRALEMGARHYL 107 (212)
T ss_dssp CHHHHSSHHHH-----------HHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred ecccccccccc-----------ccchhhhhhhcccccccccccccc
Confidence 32211110000 111334456777788887766544
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.57 E-value=1.8 Score=34.97 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=47.1
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC----CCCcccCCHHHHhcC-CCCcEEEEcC
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFP----PDAKVYGSYEALLDD-KDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~----~~~~~~~~~~e~l~~-~~~D~V~i~~ 81 (362)
++.|.|+ +.+|...+..|.+. +++|+ ++|++++++++++++.+-- -++.-.++.+++++. ..+|+++...
T Consensus 9 ~~lITGas~GIG~aia~~la~~-G~~V~-~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA 84 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHAT-GARVV-AVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA 84 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-CCEEE-EEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence 5667786 55899999999877 78865 7889999999988886411 011112334455544 4788887654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=86.44 E-value=0.47 Score=39.33 Aligned_cols=42 Identities=12% Similarity=0.106 Sum_probs=33.4
Q ss_pred EEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 11 FGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
+.|.|+ +.+|...+..|.+. +++|+ ++|++++++++.+++.+
T Consensus 9 alITGas~GIG~aia~~la~~-Ga~V~-i~~r~~~~~~~~~~~l~ 51 (268)
T d2bgka1 9 AIITGGAGGIGETTAKLFVRY-GAKVV-IADIADDHGQKVCNNIG 51 (268)
T ss_dssp EEEESTTSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHHC
T ss_pred EEEeCCCcHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHHhc
Confidence 445575 56899999999877 78855 78899999999888865
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=86.41 E-value=0.58 Score=38.14 Aligned_cols=44 Identities=20% Similarity=0.067 Sum_probs=34.8
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
++.|.|+ +.+|...+..|.+. +++|+ ++|++++++++.+++.+.
T Consensus 7 ~~lITGas~GIG~aia~~l~~~-G~~V~-~~~r~~~~l~~~~~~~~~ 51 (242)
T d1ulsa_ 7 AVLITGAAHGIGRATLELFAKE-GARLV-ACDIEEGPLREAAEAVGA 51 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHTTTC
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHHcCC
Confidence 3556675 56899999999887 78855 789999999998887753
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.31 E-value=2.4 Score=38.64 Aligned_cols=119 Identities=7% Similarity=0.049 Sum_probs=59.9
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCC----CcccCCHHHHhcC--CCCcEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPD----AKVYGSYEALLDD--KDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~----~~~~~~~~e~l~~--~~~D~V~i~~ 81 (362)
..||.|||+|..|...++.|... |+.=+.++|.+.-....+..++-+..+ .++ ....+-|.. +++.+-.+..
T Consensus 25 ~s~VlvvG~gglG~Ei~knLvl~-GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka-~~~~~~L~~lNp~v~i~~~~~ 102 (529)
T d1yova1 25 SAHVCLINATATGTEILKNLVLP-GIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRA-EAAMEFLQELNSDVSGSFVEE 102 (529)
T ss_dssp HCEEEECCCSHHHHHHHHHHHTT-TCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHH-HHHHHHHHTTCTTSBCCEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHHh-cCCEEEEEcCCcCChhhcCchhcCChhhCCCHHH-HHHHHHHHHhCCCCcEEEEcC
Confidence 56999999999999999999754 665555777654333334343321100 011 111111222 2222222221
Q ss_pred CCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEee
Q 018020 82 PTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENGVQLMDGT 131 (362)
Q Consensus 82 ~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~ 131 (362)
.+..-..--...+ .+-.|++. ...+.+....|.+.|+++++++..+.
T Consensus 103 ~~~~~~~~~~~~~-~~~dvVv~--~~~~~~~~~~l~~~c~~~~ip~i~~~ 149 (529)
T d1yova1 103 SPENLLDNDPSFF-CRFTVVVA--TQLPESTSLRLADVLWNSQIPLLICR 149 (529)
T ss_dssp CHHHHHHSCGGGG-GGCSEEEE--ESCCHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CchhhhhhHHHHh-cCCCEEEE--CCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 1100000000111 12344443 23577788888889999988877653
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.88 E-value=0.24 Score=40.62 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=33.8
Q ss_pred EEEEE-e-ccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC
Q 018020 10 RFGII-G-AADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF 55 (362)
Q Consensus 10 ~v~ii-G-~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~ 55 (362)
|++|| | .+.+|...+..|.+. +++|+ ++|+++++++++.+..++
T Consensus 7 K~alITGas~GIG~aia~~la~~-G~~Vi-~~~r~~~~l~~~~~~~~~ 52 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFARE-GAKVI-ATDINESKLQELEKYPGI 52 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHT-TCEEE-EEESCHHHHGGGGGSTTE
T ss_pred CEEEEeCCCCHHHHHHHHHHHHc-CCEEE-EEeCCHHHHHHHHhccCC
Confidence 44555 5 467899999999888 78866 678999988888776654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=85.46 E-value=0.45 Score=31.38 Aligned_cols=33 Identities=12% Similarity=0.116 Sum_probs=27.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
.+|||||.|--|+-...+.+++ ++++. +.|+++
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~L-G~~v~-vldp~~ 34 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPL-GIAVW-PVGLDA 34 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGG-TEEEE-EECTTS
T ss_pred CEEEEEcCCHHHHHHHHHHHHc-CCEEE-EEcCCC
Confidence 4799999999999999998888 78866 666653
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=84.94 E-value=0.38 Score=37.67 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=26.2
Q ss_pred eEEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCC
Q 018020 9 IRFGIIGAADIARKLSRAITLA-PNAVLSAVASRS 42 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~ 42 (362)
|||.|||+|..|...+..+++. ++.+|+ +++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~-v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQ-WYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEE-EEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEE-EEeCC
Confidence 6899999999999988888754 667766 55553
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=84.88 E-value=6.5 Score=29.79 Aligned_cols=110 Identities=10% Similarity=0.007 Sum_probs=59.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcc-cCCHHHHhcC-CCCcEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAKV-YGSYEALLDD-KDIDAVYLPLP 82 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~-~~~~~e~l~~-~~~D~V~i~~~ 82 (362)
.-+|.=||||. |..-+..++. ..+|++ +|.+++..+.. ++++|+.+.+.+ ..|..+++.. ..+|+|++.-+
T Consensus 34 g~~VLDiGcGs-G~~s~~lA~~--~~~V~a-vD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 34 NDVAVDVGCGT-GGVTLELAGR--VRRVYA-IDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGS 109 (186)
T ss_dssp TCEEEEESCTT-SHHHHHHHTT--SSEEEE-EESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCC
T ss_pred CCEEEEEECCe-Eccccccccc--ceEEEE-ecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCc
Confidence 34678899987 3222222332 357665 69998765544 445676544433 4677877654 78999987654
Q ss_pred CcccHHHHHHHH---HcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 83 TSMHVKWAISVA---QKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 83 ~~~h~~~~~~al---~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
...-.+++..+. +.|..+++. ..+.+...++.+..++.+
T Consensus 110 ~~~~~~~~~~~~~~LkpgG~lvi~---~~~~e~~~~~~~~l~~~~ 151 (186)
T d1l3ia_ 110 GGELQEILRIIKDKLKPGGRIIVT---AILLETKFEAMECLRDLG 151 (186)
T ss_dssp TTCHHHHHHHHHHTEEEEEEEEEE---ECBHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHhCcCCEEEEE---eeccccHHHHHHHHHHcC
Confidence 433333333322 233333332 234444444444444443
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.95 E-value=1 Score=32.92 Aligned_cols=75 Identities=12% Similarity=0.127 Sum_probs=47.5
Q ss_pred eeEEEEEeccH----------HHHHHHHHHhcCCCcEEEEEEcCCHHHH-------HHHHHHcCCCCCCcccCCHHHHhc
Q 018020 8 AIRFGIIGAAD----------IARKLSRAITLAPNAVLSAVASRSLEKA-------TNFAKANNFPPDAKVYGSYEALLD 70 (362)
Q Consensus 8 ~~~v~iiG~G~----------~g~~~~~~~~~~~~~~vv~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~l~ 70 (362)
.-||+|+|+.+ -+...+..|... +++ |.++||.-+.. ..+...... .....++|+++.++
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~-g~~-V~~~DP~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGK-GYE-LRIFDRNVEYARVHGANKEYIESKIPH-VSSLLVSDLDEVVA 89 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT-TCE-EEEECHHHHHHTTSSSCHHHHHHTSHH-HHTTBCSCHHHHHH
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhh-hcc-ccccCCCCCHHHHhhhhhhhhhhcccc-ccceeehhhhhhhh
Confidence 46899999864 244667777766 677 45899743221 111111100 01246789999998
Q ss_pred CCCCcEEEEcCCCcccH
Q 018020 71 DKDIDAVYLPLPTSMHV 87 (362)
Q Consensus 71 ~~~~D~V~i~~~~~~h~ 87 (362)
. .|+++++|++..=.
T Consensus 90 ~--~D~ivi~t~h~~f~ 104 (136)
T d1mv8a3 90 S--SDVLVLGNGDELFV 104 (136)
T ss_dssp H--CSEEEECSCCGGGH
T ss_pred h--ceEEEEEeCCHHHH
Confidence 6 89999999987543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=83.92 E-value=0.62 Score=37.50 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=27.2
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
.+-||+|||+|..|..-+-.|.+. +.+|+ |+|++
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~-G~~V~-vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARK-GYSVH-ILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHT-TCEEE-EEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHC-CCCEE-EEeCC
Confidence 356899999999999888888776 66754 88864
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=83.84 E-value=3.3 Score=29.05 Aligned_cols=103 Identities=13% Similarity=0.166 Sum_probs=57.2
Q ss_pred EEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc--------CCCCCCcccCCHHHHh-cCCCCcEEEEc
Q 018020 10 RFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN--------NFPPDAKVYGSYEALL-DDKDIDAVYLP 80 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~e~l-~~~~~D~V~i~ 80 (362)
||.||=--..-...+..+....++++++.+....+..+.+.+.. .. |+..-++-.+++- ..+++-+|+++
T Consensus 3 rILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al~~~~~~~~dliilD~~m-p~~~G~e~~~~ir~~~~~~pvi~ls 81 (118)
T d1u0sy_ 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITM-PEMNGIDAIKEIMKIDPNAKIIVCS 81 (118)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSC-GGGCHHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHhccCCEEEEecCC-CCCCHHHHHHHHHHhCCCCcEEEEE
Confidence 56777555443443443333348998877765555555554431 11 1111122222332 13456666665
Q ss_pred CCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHH
Q 018020 81 LPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVIL 117 (362)
Q Consensus 81 ~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~ 117 (362)
.. .-.+.+.+|+++|..=|+-||+ +.++..+.+
T Consensus 82 ~~--~~~~~~~~a~~~Ga~~yl~KP~--~~~~L~~~l 114 (118)
T d1u0sy_ 82 AM--GQQAMVIEAIKAGAKDFIVKPF--QPSRVVEAL 114 (118)
T ss_dssp CT--TCHHHHHHHHHTTCCEEEESSC--CHHHHHHHH
T ss_pred cc--CCHHHHHHHHHcCCCEEEECCC--CHHHHHHHH
Confidence 43 4567788999999888899996 555544443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=83.37 E-value=1.4 Score=31.20 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.6
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEE
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVA 39 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~ 39 (362)
+-|++|||.|.+|..++..+.+. +.++.-+.
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~-G~~Vtiv~ 52 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARL-GAEVTVLE 52 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred CCeEEEECCChHHHHHHHHHHHc-CCceEEEE
Confidence 56899999999999999999988 77777554
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=83.33 E-value=0.47 Score=40.06 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=31.4
Q ss_pred cCCceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHH
Q 018020 4 ESQAAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLE 44 (362)
Q Consensus 4 ~~~~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~ 44 (362)
+|...+.|+|||+|..|...+..|++. +++++ |+++.++
T Consensus 3 ~p~~~~dV~IIGAG~sGl~~a~~L~~~-G~~v~-i~Ek~~~ 41 (298)
T d1w4xa1 3 QPPEEVDVLVVGAGFSGLYALYRLREL-GRSVH-VIETAGD 41 (298)
T ss_dssp CCCSEEEEEEECCSHHHHHHHHHHHHT-TCCEE-EECSSSS
T ss_pred CCCCCCCEEEECccHHHHHHHHHHHhC-CCCEE-EEEcCCC
Confidence 466789999999999999888888876 67755 7887643
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=83.16 E-value=0.81 Score=34.99 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=52.6
Q ss_pred EEEEEeccH-HHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCccc--CCHHH----HhcCCCCcEEEEcCC
Q 018020 10 RFGIIGAAD-IARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVY--GSYEA----LLDDKDIDAVYLPLP 82 (362)
Q Consensus 10 ~v~iiG~G~-~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~e----~l~~~~~D~V~i~~~ 82 (362)
+|.|+|++. .|...++..+.. ++++++ .++++++.+. ++++|.. .+--+ .++.+ +-....+|+|+-+..
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~-~~~s~~k~~~-~~~lGa~-~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g 106 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKAL-GAKLIG-TVGTAQKAQS-ALKAGAW-QVINYREEDLVERLKEITGGKKVRVVYDSVG 106 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHH-TCEEEE-EESSHHHHHH-HHHHTCS-EEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred EEEEEccccccchHHHHHHHHh-CCeEee-cccchHHHHH-HHhcCCe-EEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence 688887654 787777777655 788774 5567776654 4566643 11111 23333 223456788888775
Q ss_pred CcccHHHHHHHHHcC-CeEEE
Q 018020 83 TSMHVKWAISVAQKK-KHLLM 102 (362)
Q Consensus 83 ~~~h~~~~~~al~~g-k~V~~ 102 (362)
..+.+....+++.+ +-+.+
T Consensus 107 -~~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 107 -RDTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp -GGGHHHHHHTEEEEEEEEEC
T ss_pred -HHHHHHHHHHHhcCCeeeec
Confidence 45677777777665 43443
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=83.08 E-value=0.81 Score=32.56 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
+-||+|||+|.+|...+..|.+. +.++. ++++
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~-g~~Vt-lv~~ 53 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRL-GIDSY-IFAR 53 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTT-TCEEE-EECS
T ss_pred CCEEEEECCchHHHHHHHHHHhc-cccce-eeeh
Confidence 56899999999999999999877 67766 4444
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.95 E-value=1.9 Score=33.24 Aligned_cols=75 Identities=16% Similarity=0.164 Sum_probs=52.2
Q ss_pred ceeEEEEEecc--HHHHHHHHHHhcCCCcEEEEEEcC----CHH---HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEE
Q 018020 7 AAIRFGIIGAA--DIARKLSRAITLAPNAVLSAVASR----SLE---KATNFAKANNFPPDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 7 ~~~~v~iiG~G--~~g~~~~~~~~~~~~~~vv~v~d~----~~~---~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V 77 (362)
+.+||++||-| ++...++..+... ++++.-++.+ .++ .++..+.+.|. ...++++.++.++. .|+|
T Consensus 4 ~~lkia~vGD~~nnV~~Sli~~~~~~-G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~eai~~--aDvV 78 (185)
T d1dxha2 4 HDISYAYLGDARNNMGNSLLLIGAKL-GMDVRIAAPKALWPHDEFVAQCKKFAEESGA--KLTLTEDPKEAVKG--VDFV 78 (185)
T ss_dssp GGCEEEEESCCSSHHHHHHHHHHHHT-TCEEEEECCGGGSCCHHHHHHHHHHHHHHTC--EEEEESCHHHHTTT--CSEE
T ss_pred CCCEEEEEcCCcchHHHHHHHHHHHc-CCEEEEEccHHHHhhhHHHHHHHHHhhccCC--eEEEEeChhhcccc--ccEE
Confidence 46899999964 5677778888877 7998855532 232 33444555553 24678999999986 9999
Q ss_pred EEcCCCccc
Q 018020 78 YLPLPTSMH 86 (362)
Q Consensus 78 ~i~~~~~~h 86 (362)
+.-+.-..+
T Consensus 79 yt~~w~~~~ 87 (185)
T d1dxha2 79 HTDVWVSMG 87 (185)
T ss_dssp EECCCSCSS
T ss_pred Eeehhhhhh
Confidence 987765443
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=82.48 E-value=2.9 Score=35.33 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=56.3
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCC---C-------CCCcccCCHHHHhcCCCCcEE
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNF---P-------PDAKVYGSYEALLDDKDIDAV 77 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~---~-------~~~~~~~~~~e~l~~~~~D~V 77 (362)
-+|.|.|+ |++|...+..|.+. +.+|++++ |+.++...+...+.. . .+..-..++++++. ++|.|
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~v-R~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~--~~~~v 87 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEH-GYKVRGTA-RSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK--GAAGV 87 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-SSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT--TCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEe-CCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc--cchhh
Confidence 57999996 88999999988877 78988755 666665544332210 0 01111233445554 47877
Q ss_pred EEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Q 018020 78 YLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILNACEENG 124 (362)
Q Consensus 78 ~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~~ 124 (362)
+-+.-...+..--... .-.++.....+++.|.+.+
T Consensus 88 ~~~a~~~~~~~~~~~~------------~~~nv~gt~~ll~~~~~~~ 122 (342)
T d1y1pa1 88 AHIASVVSFSNKYDEV------------VTPAIGGTLNALRAAAATP 122 (342)
T ss_dssp EECCCCCSCCSCHHHH------------HHHHHHHHHHHHHHHHTCT
T ss_pred hhhccccccccccccc------------ccchhhhHHHHHHhhhccc
Confidence 7543332111000000 0125677788888888863
|
| >d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Tubulin nucleotide-binding domain-like superfamily: Tubulin nucleotide-binding domain-like family: Tubulin, GTPase domain domain: Cell-division protein FtsZ species: Thermotoga maritima [TaxId: 2336]
Probab=82.36 E-value=0.61 Score=36.64 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=55.3
Q ss_pred eEEEEEeccHHHHHHHHHHhc--CCCcEEEEEEcCCHHHHHHHHHH----cCCC--C--C---------CcccC---CHH
Q 018020 9 IRFGIIGAADIARKLSRAITL--APNAVLSAVASRSLEKATNFAKA----NNFP--P--D---------AKVYG---SYE 66 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~--~~~~~vv~v~d~~~~~~~~~~~~----~~~~--~--~---------~~~~~---~~~ 66 (362)
|||-|||.|..|...+..+.+ ..+++++ .+|.+.+.+...... .|.. + + ....+ .+.
T Consensus 1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~i-ainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~~I~ 79 (194)
T d1w5fa1 1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFV-AVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEKIR 79 (194)
T ss_dssp CCEEEEEEHHHHHHHHHHHHHHCCTTEEEE-EEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHHHHH
T ss_pred CeEEEEEeCchHHHHHHHHHHcCCCceEEE-EEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHHHHHHHH
Confidence 589999999999988887644 4468877 456676655421111 0100 0 0 01122 334
Q ss_pred HHhcCCCCcEEEEcCC------CcccHHHHHHHHHcCCeEE--EeCCCC
Q 018020 67 ALLDDKDIDAVYLPLP------TSMHVKWAISVAQKKKHLL--MEKPMA 107 (362)
Q Consensus 67 e~l~~~~~D~V~i~~~------~~~h~~~~~~al~~gk~V~--~EKP~~ 107 (362)
++|+ +.|+|+|+.- +..-+.+++.|-+.|..++ +-+||.
T Consensus 80 ~~l~--~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~ivtlPF~ 126 (194)
T d1w5fa1 80 EVLQ--DTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFY 126 (194)
T ss_dssp HHTT--TCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCG
T ss_pred HHhc--CCCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEEEeechh
Confidence 4455 4899988643 2334555566666776654 667775
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.22 E-value=1.5 Score=31.37 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=26.2
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
+-|++|||.|.+|..++..+.+. +.++. ++.+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~-G~~Vt-lv~~ 53 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSAL-GSKTS-LMIR 53 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECS
T ss_pred CCEEEEEcCCccHHHHHHHHhcC-CcEEE-EEee
Confidence 35899999999999999999887 67766 4444
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=81.95 E-value=0.78 Score=37.02 Aligned_cols=68 Identities=15% Similarity=0.238 Sum_probs=46.8
Q ss_pred eEEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCCCCCcccCCHHHHhcC-CCCcEEEEcC
Q 018020 9 IRFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANNFPPDAKVYGSYEALLDD-KDIDAVYLPL 81 (362)
Q Consensus 9 ~~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~-~~~D~V~i~~ 81 (362)
-++.|.|+ +.+|...+..|.+. +++|+ ++|++++.+++...++-. +.+.++.+++++. .++|+++...
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~-Ga~V~-~~~r~~~~l~~~~~~~~~---~Dv~~~~~~~~~~~g~iD~lVnnA 74 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQE-GAEVT-ICARNEELLKRSGHRYVV---CDLRKDLDLLFEKVKEVDILVLNA 74 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHTCSEEEE---CCTTTCHHHHHHHSCCCSEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC-CCEEE-EEECCHHHHHhcCCcEEE---cchHHHHHHHHHHhCCCcEEEecc
Confidence 35778886 56899999999877 78855 788998877765444321 1344566777654 5799888653
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.88 E-value=2.9 Score=33.59 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=46.1
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC-CC---CCCcccCCHHHHhcC-CCCcEEEEcC
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN-FP---PDAKVYGSYEALLDD-KDIDAVYLPL 81 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~-~~---~~~~~~~~~~e~l~~-~~~D~V~i~~ 81 (362)
++.|.|+ +.+|...+..|.+. +++|+ ++++++++++++.++.+ +. -++.-.++.+++++. ..+|+++...
T Consensus 7 ~alITGas~GIG~aia~~la~~-Ga~V~-~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnA 82 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHAS-GAKVV-AVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA 82 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred EEEEeCCCcHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECC
Confidence 4567786 45899999999877 78866 67899999998888863 11 011112333445544 4678877654
|
| >d1u6ka1 c.127.1.1 (A:2-283) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) superfamily: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) family: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) domain: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=81.78 E-value=2.8 Score=33.34 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=40.1
Q ss_pred eeEEEEEeccHHHHHHH-HHHhc----CCCcEEEEEEc---CCHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEE
Q 018020 8 AIRFGIIGAADIARKLS-RAITL----APNAVLSAVAS---RSLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYL 79 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~-~~~~~----~~~~~vv~v~d---~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i 79 (362)
-.|||||=+|++|...+ ..+.+ .++.++.-+-. -+++.+++... ..-+++++-++|++++
T Consensus 2 vvKiG~iK~GNIg~s~~~dLlLDErAdRedi~vrv~gsGaKM~pe~~e~~~~------------~~~~~~~~~~pDf~i~ 69 (282)
T d1u6ka1 2 VAKAIFIKCGNLGTSMMMDMLLDERADREDVEFRVVGTSVKMDPECVEAAVE------------MALDIAEDFEPDFIVY 69 (282)
T ss_dssp CEEEEEEECSCCHHHHHTTGGGSTTSCCSSEEEEEEECTTCCSHHHHHHHHH------------HHHHHHHHHCCSEEEE
T ss_pred eeEEEEEEecccchHHHHHHHHhhhhcccCceEEEeccccCcCHHHHHHHHH------------HHHHHHHhcCCCEEEE
Confidence 37999999999998654 44332 22455442222 14444443322 2234455668999999
Q ss_pred cCCCccc
Q 018020 80 PLPTSMH 86 (362)
Q Consensus 80 ~~~~~~h 86 (362)
.+||..-
T Consensus 70 isPN~a~ 76 (282)
T d1u6ka1 70 GGPNPAA 76 (282)
T ss_dssp ECSCTTS
T ss_pred ECCCCCC
Confidence 9999644
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.74 E-value=1.4 Score=35.84 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=33.3
Q ss_pred EEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 11 FGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 11 v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
+.|.|+ +.+|...+..|.+. +++|+ ++|++++++++++++++
T Consensus 9 alITGas~GIG~aia~~la~~-Ga~V~-~~~~~~~~~~~~~~~~~ 51 (253)
T d1hxha_ 9 ALVTGGASGVGLEVVKLLLGE-GAKVA-FSDINEAAGQQLAAELG 51 (253)
T ss_dssp EEETTTTSHHHHHHHHHHHHT-TCEEE-EECSCHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHHhC
Confidence 444475 56899999999877 78855 88999999999988875
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.74 E-value=1.6 Score=35.64 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=35.1
Q ss_pred EEEEEec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHcC
Q 018020 10 RFGIIGA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKANN 54 (362)
Q Consensus 10 ~v~iiG~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~ 54 (362)
++.|.|+ +.+|...+..|.+. +++|+ ++|++.+++++.+++++
T Consensus 7 ~alVTGas~GIG~aia~~la~~-Ga~V~-~~~r~~~~l~~~~~~~~ 50 (256)
T d1k2wa_ 7 TALITGSARGIGRAFAEAYVRE-GARVA-IADINLEAARATAAEIG 50 (256)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT-TEEEE-EEESCHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHHhC
Confidence 3556686 56899999999877 78865 78999999999999886
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=81.54 E-value=2.1 Score=32.06 Aligned_cols=71 Identities=11% Similarity=0.226 Sum_probs=47.4
Q ss_pred eeEEEEEeccH---HHHHHHHHHhcCCCcEEEEEEcC---CHHHHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIGAAD---IARKLSRAITLAPNAVLSAVASR---SLEKATNFAKANNFPPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG~G~---~g~~~~~~~~~~~~~~vv~v~d~---~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
.+||++||-+. .+...+..+.+.++..++.++.. .++.....++..|.. ...++|+++.+.. .|+|+.-.
T Consensus 4 gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~--~~~~~d~~~a~~~--aDvvy~~~ 79 (160)
T d1ekxa2 4 NLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIA--WSLHSSIEEVMAE--VDILYMTR 79 (160)
T ss_dssp SCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCC--EEECSCSTTTGGG--CSEEEECC
T ss_pred CCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccc--cccccCHHHHhCc--CceEEeec
Confidence 68999999854 56667888877866665544321 123344555666632 4678999999886 89988544
Q ss_pred C
Q 018020 82 P 82 (362)
Q Consensus 82 ~ 82 (362)
.
T Consensus 80 ~ 80 (160)
T d1ekxa2 80 V 80 (160)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.45 E-value=0.74 Score=36.40 Aligned_cols=71 Identities=13% Similarity=0.110 Sum_probs=41.9
Q ss_pred eeEEEEEe-ccHHHHHHHHHHhcCC-CcEEEEEEcCCHHHHHHHHHHcCC-CCCCcccCCHHHHhcCCCCcEEEEcC
Q 018020 8 AIRFGIIG-AADIARKLSRAITLAP-NAVLSAVASRSLEKATNFAKANNF-PPDAKVYGSYEALLDDKDIDAVYLPL 81 (362)
Q Consensus 8 ~~~v~iiG-~G~~g~~~~~~~~~~~-~~~vv~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~D~V~i~~ 81 (362)
+.+|.|.| +|++|...++.|.+.. .+.+++ ..|++++...+.....+ .-+..-..++.++++ ++|+|+.+.
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~-~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~d~vi~~a 76 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG-LVRSAQGKEKIGGEADVFIGDITDADSINPAFQ--GIDALVILT 76 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEE-EESCHHHHHHTTCCTTEEECCTTSHHHHHHHHT--TCSEEEECC
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCcEEEEE-EcCCHHHHHhccCCcEEEEeeeccccccccccc--cceeeEEEE
Confidence 46799999 5999999999987663 355554 45777765543222110 001111233344455 489988654
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=81.33 E-value=0.78 Score=32.52 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=26.3
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASR 41 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~ 41 (362)
+-||.|||.|.+|...+..+++. +.++. ++++
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~~~-G~~Vt-lve~ 52 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVINGL-GAKTH-LFEM 52 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECS
T ss_pred CCEEEEECCChhhHHHHHHhhcc-ccEEE-EEee
Confidence 45899999999999999999887 66755 5555
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=81.20 E-value=3.5 Score=34.63 Aligned_cols=74 Identities=19% Similarity=0.191 Sum_probs=44.1
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCC-cEEEEEEcCCHHHHHHHHHHc-----CC--CCCC-cccCCHHHHhcC--CCCc
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPN-AVLSAVASRSLEKATNFAKAN-----NF--PPDA-KVYGSYEALLDD--KDID 75 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~-~~vv~v~d~~~~~~~~~~~~~-----~~--~~~~-~~~~~~~e~l~~--~~~D 75 (362)
.+-||.|||+|. | ..+..+.+++. .+|. +++.+++-.+...+-+ +. .+.+ ....|..+.|+. ...|
T Consensus 77 ~pk~VLiiG~G~-G-~~~~~ll~~~~~~~v~-~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 77 EPKRVLIVGGGE-G-ATLREVLKHPTVEKAV-MVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD 153 (312)
T ss_dssp CCCEEEEEECTT-S-HHHHHHTTSTTCCEEE-EEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE
T ss_pred CcceEEEeCCCc-h-HHHHHHHhcCCcceEE-EecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc
Confidence 467999999996 3 33444444544 4544 8899988665444333 10 0111 235788887643 4689
Q ss_pred EEEEcCCC
Q 018020 76 AVYLPLPT 83 (362)
Q Consensus 76 ~V~i~~~~ 83 (362)
+|++-.++
T Consensus 154 vIi~D~~d 161 (312)
T d1uira_ 154 VVIIDLTD 161 (312)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99875543
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.93 E-value=0.51 Score=38.55 Aligned_cols=34 Identities=21% Similarity=0.033 Sum_probs=27.1
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCC
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRS 42 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~ 42 (362)
+++|+|||+|..|...+..|++. +..-|.|++++
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~~-Gi~~V~V~Er~ 34 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQA-GIGKVTLLESS 34 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC-CCCeEEEEeCC
Confidence 58999999999999999999887 54234478865
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=80.84 E-value=0.66 Score=37.60 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=28.8
Q ss_pred ceeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCH
Q 018020 7 AAIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSL 43 (362)
Q Consensus 7 ~~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~ 43 (362)
...||+|||+|..|...+..|.+. +++++ |+++++
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~-G~~v~-v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDA-GVDVD-VYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHT-TCEEE-EECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHC-CCCEE-EEeCCC
Confidence 367999999999999888888877 78866 888653
|
| >d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: NTRC receiver domain species: Salmonella typhimurium [TaxId: 90371]
Probab=80.74 E-value=3.9 Score=28.86 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=57.2
Q ss_pred eeEEEEEeccHHHHHHH-HHHhcCCCcEEEEEEcCCHHHHHHHHHHcCCC--------CCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAADIARKLS-RAITLAPNAVLSAVASRSLEKATNFAKANNFP--------PDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~-~~~~~~~~~~vv~v~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
+-+|.||=--..-...+ ..+... ++++.. +....+..+.+. +.... |+..-++=+.++-+ ..+++-+
T Consensus 3 k~~ILIVDDd~~~~~~l~~~L~~~-g~~v~~-a~~~~~a~~~l~-~~~~dlii~D~~mp~~~G~el~~~l~~-~~~~~pi 78 (123)
T d1krwa_ 3 RGIVWVVDDDSSIRWVLERALAGA-GLTCTT-FENGNEVLAALA-SKTPDVLLSDIRMPGMDGLALLKQIKQ-RHPMLPV 78 (123)
T ss_dssp CCEEEEESSSHHHHHHHHHHHHHT-TCEEEE-ESSSHHHHHHHT-TCCCSEEEECCSSSSSTTHHHHHHHHH-HSSSCCE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHC-CCEEEE-eCCHHHHHHHHH-hCCCCEEEehhhcCCchHHHHHHHHHH-hCCCCeE
Confidence 66789988876544444 445544 788774 444455444443 32210 11111111223222 1344444
Q ss_pred EcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 79 LPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 79 i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
|......-.+...+|+++|..=|+.||+ +.++....++
T Consensus 79 I~~t~~~~~~~~~~a~~~Ga~dyl~KP~--~~~eL~~~i~ 116 (123)
T d1krwa_ 79 IIMTAHSDLDAAVSAYQQGAFDYLPKPF--DIDEAVALVE 116 (123)
T ss_dssp EESCCCSCHHHHHHHHHHTEEEECSSCC--HHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHcCCCeEEeCcC--CHHHHHHHHH
Confidence 4444445566788999999888999996 4555444443
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=80.66 E-value=0.61 Score=35.24 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=26.2
Q ss_pred EEEEEeccHHHHHHHHHHhcC-CCcEEEEEEcCCH
Q 018020 10 RFGIIGAADIARKLSRAITLA-PNAVLSAVASRSL 43 (362)
Q Consensus 10 ~v~iiG~G~~g~~~~~~~~~~-~~~~vv~v~d~~~ 43 (362)
||.|||+|..|...+..|++. ++.+|+ ++++++
T Consensus 4 rivIvGgG~~G~e~A~~l~~~~~~~~Vt-lie~~~ 37 (186)
T d1fcda1 4 KVVVVGGGTGGATAAKYIKLADPSIEVT-LIEPNT 37 (186)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEE-EECSCS
T ss_pred cEEEECccHHHHHHHHHHHHcCCCCcEE-EEECCC
Confidence 899999999999998888765 467877 556643
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=80.35 E-value=2.7 Score=31.48 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=48.3
Q ss_pred eeEEEEEecc--HHHHHHHHHHhcCCCcEEEEEEcC----CHH---HHHHHHHHcCCCCCCcccCCHHHHhcCCCCcEEE
Q 018020 8 AIRFGIIGAA--DIARKLSRAITLAPNAVLSAVASR----SLE---KATNFAKANNFPPDAKVYGSYEALLDDKDIDAVY 78 (362)
Q Consensus 8 ~~~v~iiG~G--~~g~~~~~~~~~~~~~~vv~v~d~----~~~---~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~D~V~ 78 (362)
-+||++||-+ .....++..+... +++++.++.. +++ ..+..+.+.+ ..+..++|+++.+++ .|+|+
T Consensus 3 g~ki~~vGD~~nnV~~Sli~~~~~~-g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~--~~i~~~~d~~~ai~~--aDviy 77 (161)
T d1vlva2 3 GVKVVFMGDTRNNVATSLMIACAKM-GMNFVACGPEELKPRSDVFKRCQEIVKETD--GSVSFTSNLEEALAG--ADVVY 77 (161)
T ss_dssp TCEEEEESCTTSHHHHHHHHHHHHT-TCEEEEESCGGGCCCHHHHHHHHHHHHHHC--CEEEEESCHHHHHTT--CSEEE
T ss_pred CCEEEEEcCCccHHHHHHHHHHHHc-CCEEEEecchhhhhhhhHHHHHHHHHhhcC--CceEEEecHHHhhhh--hhhee
Confidence 4799999965 4666777777777 7888744432 222 2333444444 234678999999996 99999
Q ss_pred EcCCCcccH
Q 018020 79 LPLPTSMHV 87 (362)
Q Consensus 79 i~~~~~~h~ 87 (362)
.-..-..+.
T Consensus 78 t~~~q~~~~ 86 (161)
T d1vlva2 78 TDVWASMGE 86 (161)
T ss_dssp ECCCC----
T ss_pred ccceeeecc
Confidence 877655443
|
| >d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator Sin1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.21 E-value=3.7 Score=29.28 Aligned_cols=106 Identities=11% Similarity=0.097 Sum_probs=55.7
Q ss_pred eEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHH------cCC------CCCCcccCCHHHHhcC--CCC
Q 018020 9 IRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKA------NNF------PPDAKVYGSYEALLDD--KDI 74 (362)
Q Consensus 9 ~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~------~~~------~~~~~~~~~~~e~l~~--~~~ 74 (362)
+||.||=--..-...+..+...-+++.+..+..-++..+.+.+. +++ -|+...++-.+++-++ ..+
T Consensus 2 irVLvVDD~~~~~~~l~~~L~~~g~~~v~~a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~~~ 81 (128)
T d2r25b1 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 81 (128)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred eEEEEEeCCHHHHHHHHHHHHHcCCeEEEEEcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCCCC
Confidence 67777776665554444433333666555565444544544331 111 0222222223333222 223
Q ss_pred cEEEEcCCCcccHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHH
Q 018020 75 DAVYLPLPTSMHVKWAISVAQKKKHLLMEKPMALNVAEFDVILN 118 (362)
Q Consensus 75 D~V~i~~~~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~ 118 (362)
-+|+++ .....+...+|+++|-.=++-||+ +.++..+.++
T Consensus 82 piI~lT--~~~~~~~~~~~~~~G~~~~l~KP~--~~~~L~~~l~ 121 (128)
T d2r25b1 82 PIVALT--AFADDSNIKECLESGMNGFLSKPI--KRPKLKTILT 121 (128)
T ss_dssp CEEEEE--SCCSHHHHHHHHHTTCSEEEESSC--CHHHHHHHHH
T ss_pred eEEEEE--CCCCHHHHHHHHHcCCCEEEECCC--CHHHHHHHHH
Confidence 333333 335577888999999888889996 5666555544
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=80.19 E-value=2 Score=35.09 Aligned_cols=68 Identities=18% Similarity=0.019 Sum_probs=43.7
Q ss_pred eeEEEEEeccHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHH---HHHcCCCCCCcccCCHHHHhcCCCCcEEEEc
Q 018020 8 AIRFGIIGAADIARKLSRAITLAPNAVLSAVASRSLEKATNF---AKANNFPPDAKVYGSYEALLDDKDIDAVYLP 80 (362)
Q Consensus 8 ~~~v~iiG~G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~e~l~~~~~D~V~i~ 80 (362)
..+|.=||||. |.. .-.+.+. +.+++ .+|.+++..+.. ++..|+... ....+..+.+.....|+|+..
T Consensus 121 g~~VLDiGcGs-G~l-~i~aa~~-g~~V~-gvDis~~av~~A~~na~~n~~~~~-~~~~d~~~~~~~~~fD~V~an 191 (254)
T d2nxca1 121 GDKVLDLGTGS-GVL-AIAAEKL-GGKAL-GVDIDPMVLPQAEANAKRNGVRPR-FLEGSLEAALPFGPFDLLVAN 191 (254)
T ss_dssp TCEEEEETCTT-SHH-HHHHHHT-TCEEE-EEESCGGGHHHHHHHHHHTTCCCE-EEESCHHHHGGGCCEEEEEEE
T ss_pred cCEEEEcccch-hHH-HHHHHhc-CCEEE-EEECChHHHHHHHHHHHHcCCcee-EEeccccccccccccchhhhc
Confidence 35888899997 543 2334444 57877 468988655443 344565421 245778888777789998854
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=80.14 E-value=1.4 Score=35.98 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=32.1
Q ss_pred EEEEE-ec-cHHHHHHHHHHhcCCCcEEEEEEcCCHHHHHHHHHHc
Q 018020 10 RFGII-GA-ADIARKLSRAITLAPNAVLSAVASRSLEKATNFAKAN 53 (362)
Q Consensus 10 ~v~ii-G~-G~~g~~~~~~~~~~~~~~vv~v~d~~~~~~~~~~~~~ 53 (362)
||+|| |+ +.||...+..|.+. +++|+ +++++++++++.+++.
T Consensus 3 KValITGas~GIG~aia~~la~~-Ga~V~-i~~r~~~~l~~~~~~l 46 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKE-GLRVF-VCARGEEGLRTTLKEL 46 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHT-TCEEE-EEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC-CCEEE-EEECCHHHHHHHHHHH
Confidence 57655 65 56899999999877 78855 7899998888776653
|