Citrus Sinensis ID: 018027
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| 224103959 | 360 | predicted protein [Populus trichocarpa] | 0.944 | 0.95 | 0.818 | 1e-166 | |
| 224059713 | 360 | predicted protein [Populus trichocarpa] | 0.944 | 0.95 | 0.818 | 1e-164 | |
| 296083855 | 359 | unnamed protein product [Vitis vinifera] | 0.983 | 0.991 | 0.811 | 1e-163 | |
| 225436644 | 367 | PREDICTED: uncharacterized protein LOC10 | 0.986 | 0.972 | 0.795 | 1e-163 | |
| 323370570 | 357 | root determined nodulation 1 [Medicago t | 0.983 | 0.997 | 0.760 | 1e-162 | |
| 357493927 | 351 | hypothetical protein MTR_5g089520 [Medic | 0.961 | 0.991 | 0.765 | 1e-160 | |
| 225465845 | 362 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.964 | 0.771 | 1e-160 | |
| 318054555 | 334 | NOD3 [Pisum sativum] gi|318054557|gb|ADV | 0.922 | 1.0 | 0.788 | 1e-156 | |
| 224057278 | 362 | predicted protein [Populus trichocarpa] | 0.969 | 0.969 | 0.745 | 1e-154 | |
| 356577618 | 368 | PREDICTED: uncharacterized protein LOC10 | 0.997 | 0.980 | 0.720 | 1e-154 |
| >gi|224103959|ref|XP_002313261.1| predicted protein [Populus trichocarpa] gi|222849669|gb|EEE87216.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 284/347 (81%), Positives = 312/347 (89%), Gaps = 5/347 (1%)
Query: 20 GFFFATYNLLTMVIQNKAADE---IGKLNPLTQMPEKTGG-GNSGMRFHVALTATDAIYS 75
GFFFATYNLLT++IQ K + G +P+T MP + G S ++FHVALTATDA YS
Sbjct: 15 GFFFATYNLLTLIIQYKDSSTGLGSGISDPVTGMPANSWKLGKSNLKFHVALTATDAPYS 74
Query: 76 QWQSRIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRGYIVL 135
QWQ R+MYYWYKK+K MP SDMGKFTR+LHSGK D+LMDEIP+F+VDPLP+GLDRGYIVL
Sbjct: 75 QWQCRVMYYWYKKMKSMPGSDMGKFTRVLHSGKGDHLMDEIPTFIVDPLPDGLDRGYIVL 134
Query: 136 NRPWAFVQWLEKATIEEEYILMAEPDHIFVKPLPNLAQGNHPAGFPFFYIKPAEHEKIIR 195
NRPWAFVQWLEKATIEE+YILMAEPDHIF PLPNLA G++PAGFPFFYIKP EHEKI+R
Sbjct: 135 NRPWAFVQWLEKATIEEDYILMAEPDHIFANPLPNLAHGDNPAGFPFFYIKPTEHEKIVR 194
Query: 196 KFYPEEMGPVTNVDPIGNSPVIIKKVYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMY 255
KFYPEE GPVT+VDPIGNSPVIIKK LLEEISPTW+NVSLRMKDD ETDK FGWVLEMY
Sbjct: 195 KFYPEEKGPVTDVDPIGNSPVIIKKS-LLEEISPTWVNVSLRMKDDPETDKAFGWVLEMY 253
Query: 256 AYAVASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKGELTYGKIGEWRFD 315
AYAVASALHGVRHILRKDFMLQPPWD EVGKRFI+HYTYGCDYN+KGELTYGKIGEWRFD
Sbjct: 254 AYAVASALHGVRHILRKDFMLQPPWDLEVGKRFIIHYTYGCDYNMKGELTYGKIGEWRFD 313
Query: 316 KRSFLNGPPPKNLSLPPPGVPESVVRLVKMVNEATANIPGWDTVTRG 362
KRS+L+GPPPKNL+LPPPGVPESVVRLVKMVNEATANIPGWD++ G
Sbjct: 314 KRSYLSGPPPKNLTLPPPGVPESVVRLVKMVNEATANIPGWDSLNSG 360
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224059713|ref|XP_002299978.1| predicted protein [Populus trichocarpa] gi|222847236|gb|EEE84783.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|296083855|emb|CBI24243.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225436644|ref|XP_002280257.1| PREDICTED: uncharacterized protein LOC100250010 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|323370570|gb|ADV35716.2| root determined nodulation 1 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|357493927|ref|XP_003617252.1| hypothetical protein MTR_5g089520 [Medicago truncatula] gi|355518587|gb|AET00211.1| hypothetical protein MTR_5g089520 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|225465845|ref|XP_002264860.1| PREDICTED: uncharacterized protein LOC100244671 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|318054555|gb|ADV35717.1| NOD3 [Pisum sativum] gi|318054557|gb|ADV35718.1| NOD3 [Pisum sativum] | Back alignment and taxonomy information |
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| >gi|224057278|ref|XP_002299202.1| predicted protein [Populus trichocarpa] gi|222846460|gb|EEE84007.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356577618|ref|XP_003556921.1| PREDICTED: uncharacterized protein LOC100786003 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 362 | ||||||
| TAIR|locus:2185046 | 358 | AT5G13500 "AT5G13500" [Arabido | 0.922 | 0.932 | 0.685 | 5.3e-127 | |
| TAIR|locus:504955105 | 366 | AT5G25265 "AT5G25265" [Arabido | 0.856 | 0.846 | 0.626 | 4.6e-112 | |
| TAIR|locus:2059573 | 358 | AT2G25260 "AT2G25260" [Arabido | 0.842 | 0.851 | 0.637 | 5.9e-112 | |
| TAIR|locus:2082314 | 802 | AT3G01720 "AT3G01720" [Arabido | 0.646 | 0.291 | 0.252 | 1.4e-10 |
| TAIR|locus:2185046 AT5G13500 "AT5G13500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1247 (444.0 bits), Expect = 5.3e-127, P = 5.3e-127
Identities = 233/340 (68%), Positives = 268/340 (78%)
Query: 25 TYNLLTMVIQNKA----ADEIGKLNPLTQMPEKTGGGNSGMR-FHVALTATDAIYSQWQS 79
TYNLLT+++ N++ +D L+P+ QMP S FHVALTATDA Y++WQ
Sbjct: 20 TYNLLTLIVHNRSGVSNSDGSPLLDPVVQMPLNIRKAKSSPAPFHVALTATDAPYNKWQC 79
Query: 80 RIMYYWYKKVKDMPRSDMGKFTRILHSGKADNLMDEIPSFVVDPLPEGLDRGYIVLNRPW 139
RIMYYWYK+ K +P SDMG FTRILHSG +DNLMDEIP+FVVDPLP GLDRGY+VLNRPW
Sbjct: 80 RIMYYWYKQKKALPGSDMGGFTRILHSGNSDNLMDEIPTFVVDPLPPGLDRGYVVLNRPW 139
Query: 140 AFVQWLEKATIEEEYILMAEPDHIFVKPLPNLAQGNHPAGFPFFYIKPAEHEKIIRKFYP 199
AFVQWLE+ATI+E+Y+LMAEPDH+FV PLPNLA G PA FPFFYI P ++E I+RK+YP
Sbjct: 140 AFVQWLERATIKEDYVLMAEPDHVFVNPLPNLAVGGFPAAFPFFYITPEKYENIVRKYYP 199
Query: 200 EEMGPVTNVDPIGNSPVIIKKVYLLEEISPTWLNVSLRMKDDHETDKQFGWVLEMYAYAV 259
EMGPVTN+DPIGNSPVII K L E+I+PTW+NVSL MK+D ETDK FGWVLEMY YA+
Sbjct: 200 AEMGPVTNIDPIGNSPVIISKESL-EKIAPTWMNVSLTMKNDPETDKAFGWVLEMYGYAI 258
Query: 260 ASALHGVRHILRKDFMLQPPWDPEVGKRFILHYTYGCDYNLKGELTYGKIGEWRFDKRSF 319
ASA+HGVRHILRKDFMLQPPWD +FI+HYTYGCDYN+KGELTYGKIGEWRFDKRS
Sbjct: 259 ASAIHGVRHILRKDFMLQPPWDLSTKGKFIIHYTYGCDYNMKGELTYGKIGEWRFDKRSH 318
Query: 320 XXXXXXXXXXXXXXXXXESVVRLVKMVNEATANIPGWDTV 359
ESVV LVKMVNEATA IP WDT+
Sbjct: 319 LRGPPPRNMSLPPPGVPESVVTLVKMVNEATATIPNWDTL 358
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| TAIR|locus:504955105 AT5G25265 "AT5G25265" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2059573 AT2G25260 "AT2G25260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2082314 AT3G01720 "AT3G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00