Citrus Sinensis ID: 018045

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR
Secondary Structure (PSIPRED)
cHHHHHHHcccEEEEcccHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHcccccccccccHHHHccccccHHHHHHHccccEEEEccccccccccccccccEEccccccccccccccEEEEEEcccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHcccHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHcccccccEEEEEccccccccccccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccEEEEcccHHHHHHHHHHHHcccccEEEEEEcccEcHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHccccHHHHccHHHHcccEEccHHHHHHccccEEEEccccccccccHccccEEEEcccccccccccccEEEEcccccccHHHHHHHHHHccccccHHHHcccccccccccccccccccccccccEEEccccccccccccccccHHHHHccccccccccccccHHHHcccccEEEccHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHccccccEEEEEccccccccEcccccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDRALEKFGNDIAIAFSGAEDVALIEYAHltgrpfrvfsldtgrlnpetyRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKglfsfyedghqeccrvrkvRPLRRALKGLRAWitgqrkdqspgtrseipvvqvdpvfegleggvgslvkwnpvanvkgndiwnflrtmdvpinslhsqgyisigcepctrpvlpgqheregrwwwedakakecglhkgnikqedaavngngngagnaSEAVADIFNSQNLVTLNRTGMENLarldhrqepwLVVLYAPWCQFCQAMEGSYVELADKlagngvkvgkfradgdQKEYAKQklqlgsfptilffpkhsskpikypserrdvDSLMAFVDALR
Flexible Loop (DISEMBL)
MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFsfyedghqeccrvrkvrplrralkglrawitgqrkdqspgtrseipvvQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQklqlgsfptilffpkhsskpikypserrdvDSLMAFVDALR
Low Complexity Region (SEG)
MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDaavngngngagnaSEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR
Disordered region (IsUnstruct)
*******FGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITG************IPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI*******************AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP***************************
Disordered Region (DISOPRED)
MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV*****ERE**WWWEDAKAKECGLH***************************IFNSQNLVTL*********RLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH************DVDSLMAFVDALR
Disordered Region (DISEMBL)
MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITG***********EIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR
Disordered Region (DISPRO)
MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKG*IK*E****************AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
P92979	465	5'-adenylylsulfate reduct	yes	no	0.983	0.763	0.829	0.0
P92980	458	5'-adenylylsulfate reduct	no	no	0.991	0.781	0.819	0.0
P92981	454	5'-adenylylsulfate reduct	no	no	0.980	0.779	0.803	1e-178
Q6Z4A7	475	Probable 5'-adenylylsulfa	yes	no	1.0	0.76	0.771	1e-163
Q02KP7	267	Phosphoadenosine phosphos	yes	no	0.603	0.816	0.570	5e-76
B7VBC3	267	Phosphoadenosine phosphos	yes	no	0.603	0.816	0.570	5e-76
O05927	267	Phosphoadenosine phosphos	yes	no	0.603	0.816	0.570	5e-76
Q9JUD5	244	Phosphoadenosine phosphos	yes	no	0.531	0.786	0.416	2e-40
Q9JRT1	246	Phosphoadenosine phosphos	yes	no	0.531	0.780	0.411	3e-39
O33579	180	Phosphoadenosine phosphos	N/A	no	0.490	0.983	0.429	1e-37

>sp|P92979|APR1_ARATH 5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2

 Score =  647 bits (1670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/363 (82%), Positives = 337/363 (92%), Gaps = 8/363 (2%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEK+GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD VEKH+
Sbjct: 109 MDKALEKYGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKHY 168

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPD+VEVQ LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKD
Sbjct: 169 GIRIEYMFPDSVEVQGLVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKD 228

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIPVVQVDPVFEGL+GGVGSLVKWNPVANV+GND+WNFLRTMDVP+N+LH+ G
Sbjct: 229 QSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAG 288

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQ--EDAAVNGNGNGAGNA 238
           YISIGCEPCT+ VLPGQHEREGRWWWEDAKAKECGLHKGN+K+  +DA VN      G +
Sbjct: 289 YISIGCEPCTKAVLPGQHEREGRWWWEDAKAKECGLHKGNVKENSDDAKVN------GES 342

Query: 239 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 298
             AVADIF S+NLVTL+R G+ENL +L++R+EPW+VVLYAPWC FCQAME SY ELADKL
Sbjct: 343 KSAVADIFKSENLVTLSRQGIENLMKLENRKEPWIVVLYAPWCPFCQAMEASYDELADKL 402

Query: 299 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
           AG+G+KV KFRADGDQKE+AKQ+LQLGSFPTIL FPK+SS+PIKYPSE+RDV+SL +F++
Sbjct: 403 AGSGIKVAKFRADGDQKEFAKQELQLGSFPTILVFPKNSSRPIKYPSEKRDVESLTSFLN 462

Query: 359 ALR 361
            +R
Sbjct: 463 LVR 465

Reduces sulfate for Cys biosynthesis. Substrate preference is adenosine-5'-phosphosulfate (APS) >> 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Uses glutathione or DTT as source of protons.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 9

>sp|P92980|APR3_ARATH 5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 296/361 (81%), Positives = 333/361 (92%), Gaps = 3/361 (0%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETYR FD VEKH+
Sbjct: 101 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYRLFDTVEKHY 160

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCR+RKVRPLRRALKGLRAWITGQRKD
Sbjct: 161 GIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRIRKVRPLRRALKGLRAWITGQRKD 220

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIPVVQVDPVFEGL+GGVGSLVKWNPVANV+GND+WNFLRTMDVP+N+LH+ G
Sbjct: 221 QSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAG 280

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240
           Y+SIGCEPCTR VLPGQHEREGRWWWEDAKAKECGLHKGNIK+     NGN     N + 
Sbjct: 281 YVSIGCEPCTRAVLPGQHEREGRWWWEDAKAKECGLHKGNIKEN---TNGNATANVNGTA 337

Query: 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
           +VADIFNS+N+V L+R G+ENL +L++R+E W+VVLYAPWC FCQAME S+ ELADKL G
Sbjct: 338 SVADIFNSENVVNLSRQGIENLMKLENRKEAWIVVLYAPWCPFCQAMEASFDELADKLGG 397

Query: 301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           +GVKV KFRADGDQK++AK++LQLGSFPTIL FPK+SS+PIKYPSE+RDVDSL +F++ +
Sbjct: 398 SGVKVAKFRADGDQKDFAKKELQLGSFPTILVFPKNSSRPIKYPSEKRDVDSLTSFLNLV 457

Query: 361 R 361
           R
Sbjct: 458 R 458

Reduces sulfate for Cys biosynthesis. Substrate preference is adenosine-5'-phosphosulfate (APS) >> 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Uses glutathione or DTT as source of protons.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 9

>sp|P92981|APR2_ARATH 5'-adenylylsulfate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=APR2 PE=1 SV=2

 Score =  624 bits (1608), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 290/361 (80%), Positives = 326/361 (90%), Gaps = 7/361 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALE+FG+ IAIAFSGAEDVALIEYA LTG+PFRVFSLDTGRLNPETYR FD VEK +
Sbjct: 101 MDKALERFGDQIAIAFSGAEDVALIEYARLTGKPFRVFSLDTGRLNPETYRLFDAVEKQY 160

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKD
Sbjct: 161 GIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKD 220

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIP+VQVDPVFEGL+GGVGSLVKWNP+ANV+G D+WNFLRTMDVP+N+LH+QG
Sbjct: 221 QSPGTRSEIPIVQVDPVFEGLDGGVGSLVKWNPLANVEGADVWNFLRTMDVPVNALHAQG 280

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK+ED A       A +   
Sbjct: 281 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEEDGA-------ADSKPA 333

Query: 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
           AV +IF S N+V L++ G+ENL +L++R+E WLVVLYAPWC FCQAME SY+ELA+KLAG
Sbjct: 334 AVQEIFESNNVVALSKGGVENLLKLENRKEAWLVVLYAPWCPFCQAMEASYIELAEKLAG 393

Query: 301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
            GVKV KFRADG+QKE+AKQ+LQLGSFPTIL FPK + + IKYPSE RDVDSLM+FV+ L
Sbjct: 394 KGVKVAKFRADGEQKEFAKQELQLGSFPTILLFPKRAPRAIKYPSEHRDVDSLMSFVNLL 453

Query: 361 R 361
           R
Sbjct: 454 R 454

Reduces sulfate for Cys biosynthesis. Substrate preference is adenosine-5'-phosphosulfate (APS) >> 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Uses glutathione or DTT as source of protons.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 9

>sp|Q6Z4A7|APR1_ORYSJ Probable 5'-adenylylsulfate reductase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=APR1 PE=2 SV=1

 Score =  576 bits (1484), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 283/367 (77%), Positives = 317/367 (86%), Gaps = 6/367 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MDRAL  FG+DIAIAFSGAEDVALIEYA LTGRPFRVFSLDTGRLNPETY+ FD+VEKH+
Sbjct: 109 MDRALAMFGSDIAIAFSGAEDVALIEYAKLTGRPFRVFSLDTGRLNPETYQLFDKVEKHY 168

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDA EVQALVR+KGLFSFYEDGHQECCR RKVRPLRRAL+GLRAWITGQRKD
Sbjct: 169 GIRIEYMFPDAGEVQALVRAKGLFSFYEDGHQECCRARKVRPLRRALRGLRAWITGQRKD 228

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTR+ IPVVQVDP FEGL GG GSLVKWNPVANV G D+W FLR MDVP+N+LH+QG
Sbjct: 229 QSPGTRAAIPVVQVDPSFEGLAGGAGSLVKWNPVANVDGKDVWTFLRAMDVPVNALHAQG 288

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI  +  A     + AG A+ 
Sbjct: 289 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIDDQGGAAAAAAHKAGGANG 348

Query: 241 AVA----DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELAD 296
             +    DIF S  +V+L R G+ENL RL+ R EPWLVVLYAPWC FCQAME SY+ELA+
Sbjct: 349 NGSAGAPDIFESSGVVSLTRAGVENLLRLESRAEPWLVVLYAPWCPFCQAMEASYLELAE 408

Query: 297 KL--AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLM 354
           +L  AG GVKVGKFRADG+QK +A+Q+LQL SFPTIL FP  +++PIKYPSE+RDVDSL+
Sbjct: 409 RLGGAGGGVKVGKFRADGEQKAFAQQELQLQSFPTILLFPSRTARPIKYPSEKRDVDSLL 468

Query: 355 AFVDALR 361
           AFV++LR
Sbjct: 469 AFVNSLR 475

Reduces sulfate for Cys biosynthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 9

>sp|Q02KP7|CYSH_PSEAB Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cysH PE=3 SV=1

 Score =  285 bits (728), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 168/221 (76%), Gaps = 3/221 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           +  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+
Sbjct: 46  LKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHY 105

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+D
Sbjct: 106 GIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRD 165

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRS++ V+++D  F   E     L K+NP++++   ++W ++R +++P NSLH +G
Sbjct: 166 QSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERG 222

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 221
           YISIGCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+
Sbjct: 223 YISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263

Reduction of activated sulfate into sulfite.

Pseudomonas aeruginosa (strain UCBPP-PA14) (taxid: 208963)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 8

>sp|B7VBC3|CYSH_PSEA8 Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=cysH PE=3 SV=1

 Score =  285 bits (728), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 168/221 (76%), Gaps = 3/221 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           +  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+
Sbjct: 46  LKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHY 105

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+D
Sbjct: 106 GIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRD 165

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRS++ V+++D  F   E     L K+NP++++   ++W ++R +++P NSLH +G
Sbjct: 166 QSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERG 222

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 221
           YISIGCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+
Sbjct: 223 YISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263

Reduction of activated sulfate into sulfite.

Pseudomonas aeruginosa (strain LESB58) (taxid: 557722)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 8

>sp|O05927|CYSH_PSEAE Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=cysH PE=1 SV=2

 Score =  285 bits (728), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 168/221 (76%), Gaps = 3/221 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           +  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+
Sbjct: 46  LKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHY 105

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+D
Sbjct: 106 GIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRD 165

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRS++ V+++D  F   E     L K+NP++++   ++W ++R +++P NSLH +G
Sbjct: 166 QSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERG 222

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 221
           YISIGCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+
Sbjct: 223 YISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263

Reduction of activated sulfate into sulfite.

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 8

>sp|Q9JUD5|CYSH_NEIMA Phosphoadenosine phosphosulfate reductase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=cysH PE=3 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/204 (41%), Positives = 124/204 (60%), Gaps = 12/204 (5%)

Query: 18  GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-GIRIEYMFPDAVEVQA 76
            AED+ + +          +F+LDTG L+ ET    D +E+ +  ++I+   P   +   
Sbjct: 50  AAEDMVITDLIAGENLNIGIFTLDTGLLHAETLNLLDRIERVYPHMQIKRFQPIREDALH 109

Query: 77  LVRSKGLFSFYE--DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV 134
            V SKG F+FY+  +  +ECCR+RK  PL RA+ G  AW+TGQR++QS  TR+E+P  + 
Sbjct: 110 YVESKGRFAFYDSVEARRECCRIRKTEPLDRAIAGADAWLTGQRREQS-ATRTELPFAEY 168

Query: 135 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 194
           D        G G + K+NP+ +   +D+W ++   +VP N L+ QG+ SIGC+PCTRPV 
Sbjct: 169 D-------AGRG-IDKYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCTRPVK 220

Query: 195 PGQHEREGRWWWEDAKAKECGLHK 218
            G+  R GRWWWED  +KECGLHK
Sbjct: 221 AGEDIRAGRWWWEDKNSKECGLHK 244

Reduction of activated sulfate into sulfite.

Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 8

>sp|Q9JRT1|CYSH_NEIMB Phosphoadenosine phosphosulfate reductase OS=Neisseria meningitidis serogroup B (strain MC58) GN=cysH1 PE=3 SV=1

 Score =  162 bits (411), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/204 (41%), Positives = 122/204 (59%), Gaps = 12/204 (5%)

Query: 18  GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-GIRIEYMFPDAVEVQA 76
            AED+ + +          +F+LDTG L+ ET    D + + +  +RI+   P   +   
Sbjct: 52  AAEDMVITDLIAGENLNIGIFTLDTGLLHTETLNLLDRLGRAYPHLRIKRFRPVREDADR 111

Query: 77  LVRSKGLFSFYE--DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV 134
            V SKG F+FY+  +  +ECCR+RK  PL RA+ G  AW+TGQR++QS  TR+E+P  + 
Sbjct: 112 YVESKGRFAFYDSVEARRECCRIRKTEPLNRAIAGADAWLTGQRREQS-ATRTELPFAEY 170

Query: 135 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL 194
           D        G+G   K+NP+ +   +D+W ++   +VP N L+ QG+ SIGC+PCTRPV 
Sbjct: 171 DA-----GRGIG---KYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCTRPVK 222

Query: 195 PGQHEREGRWWWEDAKAKECGLHK 218
            G+  R GRWWWE   +KECGLHK
Sbjct: 223 AGEDIRAGRWWWEGRNSKECGLHK 246

Reduction of activated sulfate into sulfite.

Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 8

>sp|O33579|CYSH_RHITR Phosphoadenosine phosphosulfate reductase (Fragment) OS=Rhizobium tropici GN=cysH PE=3 SV=1

 Score =  157 bits (396), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/191 (42%), Positives = 111/191 (58%), Gaps = 14/191 (7%)

Query: 40  LDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRV 97
           L TGRL PET +  DE E  + IRI    P+  ++ A     GL  FYE  +    CC V
Sbjct: 1   LQTGRLFPETLKLIDETENQYDIRISRYEPEQADIDAYAEKYGLNGFYESVEARHACCGV 60

Query: 98  RKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV 157
           RK++PL RAL G   W+TG R+ QS   R++ P  + DP          +L+K NP+A+ 
Sbjct: 61  RKLKPLARALSGATIWVTGLRRGQS-ANRADTPFAEYDPER--------NLIKVNPLADW 111

Query: 158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 217
             + I  ++    VP+N LH +GY SIGCEPCTR + PG+ ER GRWWWE+ + +ECGLH
Sbjct: 112 DIDVIRAYVADNGVPVNPLHQRGYPSIGCEPCTRAIKPGEPERAGRWWWENDEKRECGLH 171

Query: 218 KGNIKQEDAAV 228
              + +E AA 
Sbjct: 172 ---VHEEAAAA 179

Reduction of activated sulfate into sulfite.

Rhizobium tropici (taxid: 398)

EC: 1

EC: .

EC: 8

EC: .

EC: 4

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
351727060	470	adenosine 5'-phosphosulfate reductase [G	1.0	0.768	0.870	0.0
359483358	460	PREDICTED: 5'-adenylylsulfate reductase	0.994	0.780	0.858	0.0
359483360	454	PREDICTED: 5'-adenylylsulfate reductase	0.994	0.790	0.858	0.0
255554863	471	5'-adenylylsulfate reductase 1, chloropl	1.0	0.766	0.854	0.0
356555676	472	PREDICTED: 5'-adenylylsulfate reductase	1.0	0.764	0.859	0.0
449479487	463	PREDICTED: 5'-adenylylsulfate reductase	0.988	0.771	0.853	0.0
449433968	463	PREDICTED: 5'-adenylylsulfate reductase	0.988	0.771	0.850	0.0
350538397	461	adenylyl-sulfate reductase [Solanum lyco	0.988	0.774	0.836	0.0
356521997	466	PREDICTED: 5'-adenylylsulfate reductase	1.0	0.774	0.844	0.0
118485828	465	unknown [Populus trichocarpa]	1.0	0.776	0.854	0.0

>gi|351727060|ref|NP_001235612.1| adenosine 5'-phosphosulfate reductase [Glycine max] gi|18252504|gb|AAL66290.1|AF452450_1 adenosine 5'-phosphosulfate reductase [Glycine max]

 Score =  675 bits (1742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 315/362 (87%), Positives = 344/362 (95%), Gaps = 1/362 (0%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETY+FFD VEKH+
Sbjct: 109 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYKFFDAVEKHY 168

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI IEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKD
Sbjct: 169 GIHIEYMFPDAVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKD 228

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIPVVQVDPVFEGL+GG+GSLVKWNPVANV G DIW+FLRTMDVP+NSLHSQG
Sbjct: 229 QSPGTRSEIPVVQVDPVFEGLDGGIGSLVKWNPVANVNGLDIWSFLRTMDVPVNSLHSQG 288

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAA-VNGNGNGAGNAS 239
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK EDAA +NGNG    N S
Sbjct: 289 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKHEDAAQLNGNGASQANGS 348

Query: 240 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 299
             VADIFNSQ++V+L+R+G+ENLA+L++R+EPWLVVLYAPWC+FCQAME SYV+LA+KLA
Sbjct: 349 ATVADIFNSQDVVSLSRSGIENLAKLENRKEPWLVVLYAPWCRFCQAMEESYVDLAEKLA 408

Query: 300 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359
           G+GVKV KFRADGDQKEYAK +LQLGSFPTIL FPKHSS+PIKYPSE+RDVDSL AFV+A
Sbjct: 409 GSGVKVAKFRADGDQKEYAKTELQLGSFPTILLFPKHSSQPIKYPSEKRDVDSLTAFVNA 468

Query: 360 LR 361
           LR
Sbjct: 469 LR 470

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483358|ref|XP_003632943.1| PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like isoform 1 [Vitis vinifera]

 Score =  671 bits (1730), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/361 (85%), Positives = 342/361 (94%), Gaps = 2/361 (0%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+AL KFGNDIAIAFSGAED+ALIEYA LTGRPFRVFSLDTGRLNPETY+FFD VEKH+
Sbjct: 102 MDKALAKFGNDIAIAFSGAEDIALIEYARLTGRPFRVFSLDTGRLNPETYQFFDTVEKHY 161

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQ LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 162 GIRIEYMFPDAVEVQGLVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 221

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTR+E+PVVQVDP FEGL+GGVGSLVKWNPVANV+G DIWNFLR M+VP+NSLHS+G
Sbjct: 222 QSPGTRAEVPVVQVDPAFEGLDGGVGSLVKWNPVANVQGMDIWNFLRAMNVPVNSLHSKG 281

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240
           YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN+KQED   N NGNG  N + 
Sbjct: 282 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNLKQEDG--NKNGNGHANGTA 339

Query: 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
            V+D+F++Q+LVTL RTGMENLA+L++R+EPWLVVLYAPWC FCQAMEGSYVELA+KLAG
Sbjct: 340 TVSDLFDTQSLVTLTRTGMENLAKLENRKEPWLVVLYAPWCPFCQAMEGSYVELAEKLAG 399

Query: 301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           +GVKVGKFRADGD+KE+A+++LQLGSFPTILFFPKHSS+PIKY SE+RDVDSLMAFV+AL
Sbjct: 400 SGVKVGKFRADGDEKEFAQRELQLGSFPTILFFPKHSSQPIKYTSEKRDVDSLMAFVNAL 459

Query: 361 R 361
           R
Sbjct: 460 R 460

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483360|ref|XP_003632944.1| PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like isoform 2 [Vitis vinifera]

 Score =  670 bits (1729), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/361 (85%), Positives = 342/361 (94%), Gaps = 2/361 (0%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+AL KFGNDIAIAFSGAED+ALIEYA LTGRPFRVFSLDTGRLNPETY+FFD VEKH+
Sbjct: 96  MDKALAKFGNDIAIAFSGAEDIALIEYARLTGRPFRVFSLDTGRLNPETYQFFDTVEKHY 155

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQ LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 156 GIRIEYMFPDAVEVQGLVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 215

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTR+E+PVVQVDP FEGL+GGVGSLVKWNPVANV+G DIWNFLR M+VP+NSLHS+G
Sbjct: 216 QSPGTRAEVPVVQVDPAFEGLDGGVGSLVKWNPVANVQGMDIWNFLRAMNVPVNSLHSKG 275

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240
           YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN+KQED   N NGNG  N + 
Sbjct: 276 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNLKQEDG--NKNGNGHANGTA 333

Query: 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
            V+D+F++Q+LVTL RTGMENLA+L++R+EPWLVVLYAPWC FCQAMEGSYVELA+KLAG
Sbjct: 334 TVSDLFDTQSLVTLTRTGMENLAKLENRKEPWLVVLYAPWCPFCQAMEGSYVELAEKLAG 393

Query: 301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           +GVKVGKFRADGD+KE+A+++LQLGSFPTILFFPKHSS+PIKY SE+RDVDSLMAFV+AL
Sbjct: 394 SGVKVGKFRADGDEKEFAQRELQLGSFPTILFFPKHSSQPIKYTSEKRDVDSLMAFVNAL 453

Query: 361 R 361
           R
Sbjct: 454 R 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255554863|ref|XP_002518469.1| 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis] gi|223542314|gb|EEF43856.1| 5'-adenylylsulfate reductase 1, chloroplast precursor, putative [Ricinus communis]

 Score =  670 bits (1728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/364 (85%), Positives = 343/364 (94%), Gaps = 3/364 (0%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFGNDIAIAFSGAED+ALIEYA LTGRPFRVFSLDTGRLNPETYRFFD VEKH+
Sbjct: 108 MDKALEKFGNDIAIAFSGAEDIALIEYAKLTGRPFRVFSLDTGRLNPETYRFFDTVEKHY 167

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 168 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 227

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIPVVQVDPVFEGL+GG GSL+KWNP+ANV G D+W FLR M+VP+NSLH+QG
Sbjct: 228 QSPGTRSEIPVVQVDPVFEGLDGGAGSLIKWNPMANVDGEDVWKFLRAMEVPVNSLHAQG 287

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAV-NGNGNGAG--N 237
           YISIGCEPCT+PVLPGQHEREGRWWWEDA+AKECGLHKGN+KQ+D A  NGNGNGA   N
Sbjct: 288 YISIGCEPCTKPVLPGQHEREGRWWWEDARAKECGLHKGNLKQDDVAQHNGNGNGAAHSN 347

Query: 238 ASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADK 297
            S AVADIFNSQ+LV L+RTG+ENL +L++R+EPW+VVLYAPWCQFC+ ME SY+ELADK
Sbjct: 348 GSAAVADIFNSQSLVKLSRTGIENLLKLENRKEPWIVVLYAPWCQFCKGMEESYLELADK 407

Query: 298 LAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           LAG+GVKVGKFRADGD+KE+AK++LQLGSFPTIL FP+HSSKPIKYPSE+RDVDSLM FV
Sbjct: 408 LAGSGVKVGKFRADGDEKEFAKKELQLGSFPTILLFPRHSSKPIKYPSEKRDVDSLMTFV 467

Query: 358 DALR 361
           +ALR
Sbjct: 468 NALR 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555676|ref|XP_003546156.1| PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Glycine max]

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/362 (85%), Positives = 343/362 (94%), Gaps = 1/362 (0%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETY+FFD VEKH+
Sbjct: 111 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYKFFDAVEKHY 170

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI IEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKD
Sbjct: 171 GIHIEYMFPDAVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKD 230

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIP+VQVDPVFEGL+GG+GSLVKWNPVANV G DIWNFLRTM+VP+NSLHSQG
Sbjct: 231 QSPGTRSEIPIVQVDPVFEGLDGGIGSLVKWNPVANVNGLDIWNFLRTMNVPVNSLHSQG 290

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAA-VNGNGNGAGNAS 239
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN+KQEDAA +NGNG   GN S
Sbjct: 291 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNLKQEDAAQLNGNGTSQGNGS 350

Query: 240 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 299
             VADIF SQN+V+L+R+G+ENLA+L++R+E WLVVLYAPWC+FCQAME SYV+LA+KLA
Sbjct: 351 ATVADIFISQNVVSLSRSGIENLAKLENRKEHWLVVLYAPWCRFCQAMEESYVDLAEKLA 410

Query: 300 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359
            +GVKV KFRADG+QKEYAK +LQLGSFPTIL FPKHSS+PIKYPSE+RDVDSL AFV+A
Sbjct: 411 RSGVKVAKFRADGEQKEYAKSELQLGSFPTILLFPKHSSQPIKYPSEKRDVDSLTAFVNA 470

Query: 360 LR 361
           LR
Sbjct: 471 LR 472

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479487|ref|XP_004155612.1| PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/362 (85%), Positives = 340/362 (93%), Gaps = 5/362 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETY+FFDEVEKH+
Sbjct: 106 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYKFFDEVEKHY 165

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI IEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 166 GIHIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 225

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSE+PVVQVDPVFEGL+GG+GSLVKWNPVANV   DIW+FLR+M+VP+N+LHSQG
Sbjct: 226 QSPGTRSEVPVVQVDPVFEGLDGGIGSLVKWNPVANVGSKDIWDFLRSMNVPVNTLHSQG 285

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAA-VNGNGNGAGNAS 239
           Y+SIGCEPCTRPVLP QHEREGRWWWEDAKAKECGLHKGN+KQED A +NG+ NG     
Sbjct: 286 YVSIGCEPCTRPVLPWQHEREGRWWWEDAKAKECGLHKGNLKQEDPAQLNGDANGISTD- 344

Query: 240 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 299
              ADIF SQNLV+L R G+ENLARL+ R+EPW+VVLYAPWC+FCQAMEGSYVELA+KLA
Sbjct: 345 ---ADIFESQNLVSLTRGGIENLARLEGRKEPWIVVLYAPWCRFCQAMEGSYVELAEKLA 401

Query: 300 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359
           G GVKVGKFRADG++KE+A+Q+LQLGSFPTILFFPKHSS+PIKYPSE+RDVDSLMAFV+A
Sbjct: 402 GTGVKVGKFRADGEEKEFAQQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMAFVNA 461

Query: 360 LR 361
            R
Sbjct: 462 FR 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433968|ref|XP_004134768.1| PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Cucumis sativus]

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 308/362 (85%), Positives = 339/362 (93%), Gaps = 5/362 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETY+FFDEVEKH+
Sbjct: 106 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYKFFDEVEKHY 165

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI IEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 166 GIHIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 225

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSE+PVVQVDPVFEGL+GG+GSLVKWNPVANV   DIW+FLR+M+VP+N+LHSQG
Sbjct: 226 QSPGTRSEVPVVQVDPVFEGLDGGIGSLVKWNPVANVGSKDIWDFLRSMNVPVNTLHSQG 285

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAA-VNGNGNGAGNAS 239
           Y+SIGCEPCTRPVLP QHEREGRWWWEDA AKECGLHKGN+KQED A +NG+ NG     
Sbjct: 286 YVSIGCEPCTRPVLPWQHEREGRWWWEDANAKECGLHKGNLKQEDPAQLNGDANGISTD- 344

Query: 240 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 299
              ADIF SQNLV+L R G+ENLARL+ R+EPW+VVLYAPWC+FCQAMEGSYVELA+KLA
Sbjct: 345 ---ADIFESQNLVSLTRGGIENLARLEGRKEPWIVVLYAPWCRFCQAMEGSYVELAEKLA 401

Query: 300 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA 359
           G GVKVGKFRADG++KE+A+Q+LQLGSFPTILFFPKHSS+PIKYPSE+RDVDSLMAFV+A
Sbjct: 402 GTGVKVGKFRADGEEKEFAQQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMAFVNA 461

Query: 360 LR 361
            R
Sbjct: 462 FR 463

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538397|ref|NP_001233829.1| adenylyl-sulfate reductase [Solanum lycopersicum] gi|51457940|gb|AAU03359.1| adenylyl-sulfate reductase [Solanum lycopersicum]

 Score =  654 bits (1686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 302/361 (83%), Positives = 335/361 (92%), Gaps = 4/361 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFG+DIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETY+ FD VEKH+
Sbjct: 105 MDKALEKFGDDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYQLFDTVEKHY 164

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPD+VEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 165 GIRIEYMFPDSVEVQALVRTKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 224

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIP+VQVDP FEGL+GG GSLVKWNPVANV G DIWNFLR M+VP+NSLHSQG
Sbjct: 225 QSPGTRSEIPIVQVDPSFEGLDGGAGSLVKWNPVANVDGKDIWNFLRAMNVPVNSLHSQG 284

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK E      NG    N + 
Sbjct: 285 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKDETV----NGAAQTNGTA 340

Query: 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
            VADIF+++++VTL++ G+ENL +L+ R+EPWLVVLYAPWCQFCQAMEGSYVELA+KLAG
Sbjct: 341 TVADIFDTKDIVTLSKPGVENLVKLEDRREPWLVVLYAPWCQFCQAMEGSYVELAEKLAG 400

Query: 301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           +GVKVGKFRADGDQK +A+++LQLGSFPTILFFPKHSSK IKYPSE+RDVDSL+AFV+AL
Sbjct: 401 SGVKVGKFRADGDQKAFAQEELQLGSFPTILFFPKHSSKAIKYPSEKRDVDSLLAFVNAL 460

Query: 361 R 361
           R
Sbjct: 461 R 461

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521997|ref|XP_003529636.1| PREDICTED: 5'-adenylylsulfate reductase 3, chloroplastic-like [Glycine max]

 Score =  653 bits (1685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/367 (84%), Positives = 343/367 (93%), Gaps = 6/367 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MDRAL+KFGNDIAIAFSGAEDVALIEYA LTGRPFRVFSLDTGRLNPETY+ FD VEKH+
Sbjct: 100 MDRALDKFGNDIAIAFSGAEDVALIEYAKLTGRPFRVFSLDTGRLNPETYQLFDAVEKHY 159

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 160 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 219

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIPVVQVDPVFEG++GG+GSLVKWNPVANVKG+DIWNFLRTM+VP+NSLH++G
Sbjct: 220 QSPGTRSEIPVVQVDPVFEGMDGGIGSLVKWNPVANVKGHDIWNFLRTMNVPVNSLHAKG 279

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQE-DAAVNGNGNGAGNA- 238
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN+KQ+ +  VNGNG    +A 
Sbjct: 280 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNVKQQKEEDVNGNGLSQSHAN 339

Query: 239 --SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELAD 296
             +  V DIFNS N+V L+RTG+ENLA+L+ R+EPWLVVLYAPWC +CQAME SYV+LAD
Sbjct: 340 GDATTVPDIFNSPNVVNLSRTGIENLAKLEDRKEPWLVVLYAPWCPYCQAMEESYVDLAD 399

Query: 297 KLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKP-IKYPSERRDVDSLM 354
           KLAG+ G+KVGKFRADG+QKE+AK +LQLGSFPTILFFPKHSS+P IKYPSE+RDVDSLM
Sbjct: 400 KLAGSTGMKVGKFRADGEQKEFAKSELQLGSFPTILFFPKHSSRPTIKYPSEKRDVDSLM 459

Query: 355 AFVDALR 361
           AFV+ALR
Sbjct: 460 AFVNALR 466

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118485828|gb|ABK94761.1| unknown [Populus trichocarpa]

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/364 (85%), Positives = 339/364 (93%), Gaps = 3/364 (0%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFG+DIAIAFSGAEDVALIEYA LTGRPFRVFSLDTGRLNPETY FFD+VEKH+
Sbjct: 102 MDKALEKFGDDIAIAFSGAEDVALIEYAKLTGRPFRVFSLDTGRLNPETYHFFDQVEKHY 161

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 162 GIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 221

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIPVVQVDPVFEGL+GG GSL+KWNP+ANV+G D+W FLRTMDVP+NSLHS+G
Sbjct: 222 QSPGTRSEIPVVQVDPVFEGLDGGAGSLIKWNPMANVEGQDVWKFLRTMDVPVNSLHSKG 281

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAA---VNGNGNGAGN 237
           YISIGCEPCTRPVLPGQHEREGRWWWEDA AKECGLHKGN+KQ D A    NGNG    N
Sbjct: 282 YISIGCEPCTRPVLPGQHEREGRWWWEDATAKECGLHKGNLKQGDEAQLNGNGNGAAHAN 341

Query: 238 ASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADK 297
            +  VADIFNS+NLV L+R G+ENL +L++R+EPWLVVLYAPWCQFCQ ME SYVELADK
Sbjct: 342 GAATVADIFNSENLVNLSRPGIENLLKLENRKEPWLVVLYAPWCQFCQGMEASYVELADK 401

Query: 298 LAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           LAG+GVKVGKFRADGDQKE++KQ+LQLGSFPTILFFPKHSS+PIKYPSE+RDVDSLM FV
Sbjct: 402 LAGSGVKVGKFRADGDQKEFSKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMTFV 461

Query: 358 DALR 361
           +ALR
Sbjct: 462 NALR 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2125786	465	APR1 "APS reductase 1" [Arabid	0.988	0.767	0.819	9.7e-167
TAIR|locus:2120628	458	APR3 "APS reductase 3" [Arabid	0.991	0.781	0.808	7.9e-165
TAIR|locus:2018097	454	APR2 "5'adenylylphosphosulfate	0.980	0.779	0.797	4e-161
TIGR_CMR|GSU_1716	235	GSU_1716 "phosphoadenosine pho	0.570	0.876	0.414	5.7e-43
TIGR_CMR|SPO_2635	253	SPO_2635 "phosophoadenylyl-sul	0.562	0.802	0.357	8.4e-26
UNIPROTKB|P65668	254	cysH "Probable phosphoadenosin	0.526	0.748	0.360	5.9e-25
TIGR_CMR|BA_1440	226	BA_1440 "phosphoadenosine phos	0.551	0.880	0.325	4.8e-23
UNIPROTKB|Q9KUX2	253	cysH "Phosphoadenosine phospho	0.551	0.786	0.288	3.5e-17
TIGR_CMR|VC_0386	253	VC_0386 "phosphoadenosine phos	0.551	0.786	0.288	3.5e-17
TIGR_CMR|SO_3736	245	SO_3736 "phosphoadenosine phos	0.537	0.791	0.287	7.8e-17

TAIR|locus:2125786 APR1 "APS reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1622 (576.0 bits), Expect = 9.7e-167, P = 9.7e-167
 Identities = 296/361 (81%), Positives = 330/361 (91%)

Query:     1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
             MD+ALEK+GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD VEKH+
Sbjct:   109 MDKALEKYGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKHY 168

Query:    61 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
             GIRIEYMFPD+VEVQ LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKD
Sbjct:   169 GIRIEYMFPDSVEVQGLVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKD 228

Query:   121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
             QSPGTRSEIPVVQVDPVFEGL+GGVGSLVKWNPVANV+GND+WNFLRTMDVP+N+LH+ G
Sbjct:   229 QSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAG 288

Query:   181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDXXXXXXXXXXXXXSE 240
             YISIGCEPCT+ VLPGQHEREGRWWWEDAKAKECGLHKGN+K+                 
Sbjct:   289 YISIGCEPCTKAVLPGQHEREGRWWWEDAKAKECGLHKGNVKENSDDAKVNGES----KS 344

Query:   241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
             AVADIF S+NLVTL+R G+ENL +L++R+EPW+VVLYAPWC FCQAME SY ELADKLAG
Sbjct:   345 AVADIFKSENLVTLSRQGIENLMKLENRKEPWIVVLYAPWCPFCQAMEASYDELADKLAG 404

Query:   301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
             +G+KV KFRADGDQKE+AKQ+LQLGSFPTIL FPK+SS+PIKYPSE+RDV+SL +F++ +
Sbjct:   405 SGIKVAKFRADGDQKEFAKQELQLGSFPTILVFPKNSSRPIKYPSEKRDVESLTSFLNLV 464

Query:   361 R 361
             R
Sbjct:   465 R 465

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA

GO:0019419 "sulfate reduction" evidence=IEA;IDA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009973 "adenylyl-sulfate reductase activity" evidence=IDA

GO:0009536 "plastid" evidence=TAS

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0000103 "sulfate assimilation" evidence=IGI;IDA

TAIR|locus:2120628 APR3 "APS reductase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1604 (569.7 bits), Expect = 7.9e-165, P = 7.9e-165
 Identities = 292/361 (80%), Positives = 329/361 (91%)

Query:     1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
             MD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRP+RVFSLDTGRLNPETYR FD VEKH+
Sbjct:   101 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPYRVFSLDTGRLNPETYRLFDTVEKHY 160

Query:    61 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
             GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCR+RKVRPLRRALKGLRAWITGQRKD
Sbjct:   161 GIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRIRKVRPLRRALKGLRAWITGQRKD 220

Query:   121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
             QSPGTRSEIPVVQVDPVFEGL+GGVGSLVKWNPVANV+GND+WNFLRTMDVP+N+LH+ G
Sbjct:   221 QSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAG 280

Query:   181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDXXXXXXXXXXXXXSE 240
             Y+SIGCEPCTR VLPGQHEREGRWWWEDAKAKECGLHKGNIK+               + 
Sbjct:   281 YVSIGCEPCTRAVLPGQHEREGRWWWEDAKAKECGLHKGNIKEN---TNGNATANVNGTA 337

Query:   241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
             +VADIFNS+N+V L+R G+ENL +L++R+E W+VVLYAPWC FCQAME S+ ELADKL G
Sbjct:   338 SVADIFNSENVVNLSRQGIENLMKLENRKEAWIVVLYAPWCPFCQAMEASFDELADKLGG 397

Query:   301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
             +GVKV KFRADGDQK++AK++LQLGSFPTIL FPK+SS+PIKYPSE+RDVDSL +F++ +
Sbjct:   398 SGVKVAKFRADGDQKDFAKKELQLGSFPTILVFPKNSSRPIKYPSEKRDVDSLTSFLNLV 457

Query:   361 R 361
             R
Sbjct:   458 R 458

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA

GO:0019419 "sulfate reduction" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000103 "sulfate assimilation" evidence=IGI;IDA

GO:0009973 "adenylyl-sulfate reductase activity" evidence=IDA

TAIR|locus:2018097 APR2 "5'adenylylphosphosulfate reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1569 (557.4 bits), Expect = 4.0e-161, P = 4.0e-161
 Identities = 288/361 (79%), Positives = 323/361 (89%)

Query:     1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
             MD+ALE+FG+ IAIAFSGAEDVALIEYA LTG+PFRVFSLDTGRLNPETYR FD VEK +
Sbjct:   101 MDKALERFGDQIAIAFSGAEDVALIEYARLTGKPFRVFSLDTGRLNPETYRLFDAVEKQY 160

Query:    61 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
             GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKD
Sbjct:   161 GIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKD 220

Query:   121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
             QSPGTRSEIP+VQVDPVFEGL+GGVGSLVKWNP+ANV+G D+WNFLRTMDVP+N+LH+QG
Sbjct:   221 QSPGTRSEIPIVQVDPVFEGLDGGVGSLVKWNPLANVEGADVWNFLRTMDVPVNALHAQG 280

Query:   181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDXXXXXXXXXXXXXSE 240
             Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK+ED               
Sbjct:   281 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEEDGAADSKPA------- 333

Query:   241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
             AV +IF S N+V L++ G+ENL +L++R+E WLVVLYAPWC FCQAME SY+ELA+KLAG
Sbjct:   334 AVQEIFESNNVVALSKGGVENLLKLENRKEAWLVVLYAPWCPFCQAMEASYIELAEKLAG 393

Query:   301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
              GVKV KFRADG+QKE+AKQ+LQLGSFPTIL FPK + + IKYPSE RDVDSLM+FV+ L
Sbjct:   394 KGVKVAKFRADGEQKEFAKQELQLGSFPTILLFPKRAPRAIKYPSEHRDVDSLMSFVNLL 453

Query:   361 R 361
             R
Sbjct:   454 R 454

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA

GO:0019419 "sulfate reduction" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=IMP;IDA

GO:0019379 "sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)" evidence=TAS

GO:0000103 "sulfate assimilation" evidence=IGI;IDA

GO:0009973 "adenylyl-sulfate reductase activity" evidence=IDA

TIGR_CMR|GSU_1716 GSU_1716 "phosphoadenosine phosphosulfate reductase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 90/217 (41%), Positives = 127/217 (58%)

Query:     5 LEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR 63
             +E  G  +++A S   EDV +I+       P  +F++DTGRL  ET+   + +   +G+ 
Sbjct:    26 IEAAGGAVSLACSFSVEDVIIIDLITSHDLPVGIFAIDTGRLPEETHEVAEAIVSRYGVG 85

Query:    64 IEYMFPDAVEVQALVRSKGLFSFYED--GHQECCRVRKVRPLRRALKGLRAWITGQRKDQ 121
             I++ FP   EV+ L+R KG FSF E      +CC +RKV PL RAL GL  W+TG R+  
Sbjct:    86 IDWYFPRNDEVERLLRGKGPFSFRESLVNRHQCCHIRKVEPLGRALAGLAGWVTGVRRAH 145

Query:   122 SPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGY 181
                TR+ +  +++D       GG+   VK NP+ +   + +W +     +P+N LH QGY
Sbjct:   146 GV-TRANLAPLEIDDT----NGGI---VKINPLLDWTDSQVWAYAEARRLPVNRLHHQGY 197

Query:   182 ISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 218
              SIGC PCTR V PGQ  R GRWWWED + KECGLH+
Sbjct:   198 PSIGCAPCTRAVTPGQPPRSGRWWWEDPEHKECGLHR 234

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|SPO_2635 SPO_2635 "phosophoadenylyl-sulfate reductase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 78/218 (35%), Positives = 112/218 (51%)

Query:     1 MDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 59
             M  AL + G DIA+  S GAE V L+  A +  R   V  +DT  L  ET  +  EV + 
Sbjct:    37 MHGALREAG-DIALVSSFGAESVVLLHMAAVIDRQVPVLFIDTQMLFAETLVYQQEVSER 95

Query:    60 FGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRK 119
              G++   +   A +  A     G     +     CC +RK  PL+RAL G   WITG+++
Sbjct:    96 LGLKNVQVIRAAEDDVARDDPYGALRLRDT--DACCTLRKTIPLQRALSGYDGWITGRKR 153

Query:   120 DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ 179
              Q+ GTR+ +   +V       E G G  +K NP+A+    D+  ++    +P + L +Q
Sbjct:   154 FQA-GTRAALDFFEV-------EDGTGR-IKVNPLAHWAPEDVRAYMEENRLPRHPLVAQ 204

Query:   180 GYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 217
             GY SIGC PCT PV PG+  R GRW   +   +ECG+H
Sbjct:   205 GYPSIGCAPCTSPVAPGEDPRAGRW--RNQNKEECGIH 240

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=ISS

GO:0019379 "sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)" evidence=ISS

UNIPROTKB|P65668 cysH "Probable phosphoadenosine phosphosulfate reductase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 74/205 (36%), Positives = 102/205 (49%)

Query:    14 IAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD-AV 72
             +  S   D  L++ A        V  LDTG    ET    D +E  + +R+  + P+  V
Sbjct:    62 VVASNMADAVLVDLAAKVRPGVPVIFLDTGYHFVETIGTRDAIESVYDVRVLNVTPEHTV 121

Query:    73 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVV 132
               Q  +  K LF+   + H ECCR+RKV PL + L+G  AW+TG R+  +P TR+  P+V
Sbjct:   122 AEQDELLGKDLFA--RNPH-ECCRLRKVVPLGKTLRGYSAWVTGLRRVDAP-TRANAPLV 177

Query:   133 QVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRP 192
               D  F+        LVK NP+A     D+  ++   DV +N L  +GY SIGC PCT  
Sbjct:   178 SFDETFK--------LVKVNPLAAWTDQDVQEYIADNDVLVNPLVREGYPSIGCAPCTAK 229

Query:   193 VLPGQHEREGRWWWEDAKAKECGLH 217
                G   R GRW  +     ECGLH
Sbjct:   230 PAEGADPRSGRW--QGLAKTECGLH 252

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006535 "cysteine biosynthetic process from serine" evidence=TAS

GO:0006790 "sulfur compound metabolic process" evidence=TAS

GO:0040007 "growth" evidence=IMP

GO:0043866 "adenylyl-sulfate reductase (thioredoxin) activity" evidence=IDA;IMP

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

TIGR_CMR|BA_1440 BA_1440 "phosphoadenosine phosphosulfate reductase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 71/218 (32%), Positives = 107/218 (49%)

Query:     4 ALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-G 61
             A +++ ++I  A S G E + L++  +      +V  LDT     ETY    +V + F  
Sbjct:    22 AYKEYKSEIVYACSFGVEGMVLLDLINQVNPSAKVVFLDTNVHFQETYELIQKVRERFPS 81

Query:    62 IRIEYMFPD-AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
             + I    P   ++ Q  +    L   +E     CC++RK+ PL  +L   +AWI+G R++
Sbjct:    82 LNIIEKQPKLTLDEQDKLHGDKL---WESNPNLCCKIRKILPLEESLANEKAWISGLRRE 138

Query:   121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
             QS  TR     +  D  F+ ++  V  L+ W         ++W ++    +P NSLH  G
Sbjct:   139 QSE-TRKHTKFINQDHRFQSIK--VCPLIHWT------WKEVWRYVYKHSLPYNSLHDIG 189

Query:   181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 217
             Y SIGCE CT PV  G   R+GRW     K K ECGLH
Sbjct:   190 YPSIGCEKCTLPVGEGGDSRDGRW---AGKVKTECGLH 224

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

UNIPROTKB|Q9KUX2 cysH "Phosphoadenosine phosphosulfate reductase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 213 (80.0 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 63/218 (28%), Positives = 108/218 (49%)

Query:     5 LEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR 63
             LE    + A++ S G +   ++           V   DTG L PETY+F DE+ +   + 
Sbjct:    44 LENLQGNHALSSSFGIQAAVMLHLLTSVKSDIPVVLTDTGYLFPETYQFIDELTERLNLN 103

Query:    64 IE-YMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKD 120
             ++ Y  P +   Q     K L+    +G +   ++ KV P+RRAL  L    W +G R++
Sbjct:   104 LKVYSAPVSAAWQEARYGK-LWEQGVEGIERYNQINKVEPMRRALDELNIGTWFSGLRRE 162

Query:   121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
             QS  +R+ +P++ V       + GV    K+ PV +    ++  +L+  D+P + L  QG
Sbjct:   163 QSQ-SRASLPILSV-------QNGV---FKFLPVIDWTNKEVHYYLKDNDLPYHPLWEQG 211

Query:   181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 218
             Y+S+G    T+   PG +E + R++      +ECGLH+
Sbjct:   212 YLSVGDTHTTQKWQPGMNEEQTRFF---GLKRECGLHE 246

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|VC_0386 VC_0386 "phosphoadenosine phosphosulfate reductase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 213 (80.0 bits), Expect = 3.5e-17, P = 3.5e-17
 Identities = 63/218 (28%), Positives = 108/218 (49%)

Query:     5 LEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR 63
             LE    + A++ S G +   ++           V   DTG L PETY+F DE+ +   + 
Sbjct:    44 LENLQGNHALSSSFGIQAAVMLHLLTSVKSDIPVVLTDTGYLFPETYQFIDELTERLNLN 103

Query:    64 IE-YMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKD 120
             ++ Y  P +   Q     K L+    +G +   ++ KV P+RRAL  L    W +G R++
Sbjct:   104 LKVYSAPVSAAWQEARYGK-LWEQGVEGIERYNQINKVEPMRRALDELNIGTWFSGLRRE 162

Query:   121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
             QS  +R+ +P++ V       + GV    K+ PV +    ++  +L+  D+P + L  QG
Sbjct:   163 QSQ-SRASLPILSV-------QNGV---FKFLPVIDWTNKEVHYYLKDNDLPYHPLWEQG 211

Query:   181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK 218
             Y+S+G    T+   PG +E + R++      +ECGLH+
Sbjct:   212 YLSVGDTHTTQKWQPGMNEEQTRFF---GLKRECGLHE 246

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

TIGR_CMR|SO_3736 SO_3736 "phosphoadenosine phosphosulfate reductase" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 210 (79.0 bits), Expect = 7.8e-17, P = 7.8e-17
 Identities = 61/212 (28%), Positives = 96/212 (45%)

Query:     9 GNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIE-YM 67
             GN    +  G +   ++           V   DTG L PETY+F D++ +   + ++ Y 
Sbjct:    46 GNHALSSSFGIQAAVMLHMVSQVQSDIPVILTDTGYLFPETYQFIDQLTERLSLNLKVYQ 105

Query:    68 FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRA--WITGQRKDQSPGT 125
              P     Q   R   L+    +G +   R+ KV P++RAL  L    W  G R+ QS  T
Sbjct:   106 APITSAWQE-ARFGQLWEQGVEGLERYNRLNKVEPMQRALAELEVGTWFAGLRRSQS-ST 163

Query:   126 RSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIG 185
             R E+P++ +           GS  K  P+      D+  +L   D+P + L  QGY+S+G
Sbjct:   164 REELPILAIH----------GSRFKLLPIIEWSNKDVHLYLTQFDLPYHPLWEQGYVSVG 213

Query:   186 CEPCTRPVLPGQHEREGRWWWEDAKAKECGLH 217
                 ++P+  G  E E R+   +   +ECGLH
Sbjct:   214 DTHSSKPLELGMTEEETRF---NGLKRECGLH 242

GO:0004604 "phosphoadenylyl-sulfate reductase (thioredoxin) activity" evidence=ISS

GO:0006790 "sulfur compound metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q02KP7	CYSH_PSEAB	1, ., 8, ., 4, ., 8	0.5701	0.6038	0.8164	yes	no
Q6Z4A7	APR1_ORYSJ	1, ., 8, ., 4, ., 9	0.7711	1.0	0.76	yes	no
B7VBC3	CYSH_PSEA8	1, ., 8, ., 4, ., 8	0.5701	0.6038	0.8164	yes	no
O05927	CYSH_PSEAE	1, ., 8, ., 4, ., 8	0.5701	0.6038	0.8164	yes	no
P92979	APR1_ARATH	1, ., 8, ., 4, ., 9	0.8292	0.9833	0.7634	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.8.4	LOW CONFIDENCE prediction!
4th Layer	1.8.4.8	0.824
4th Layer	1.8.4.9	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
PLN02309	457	PLN02309, PLN02309, 5'-adenylylsulfate reductase	0.0
TIGR00424	463	TIGR00424, APS_reduc, 5'-adenylylsulfate reductase	0.0
PRK02090	241	PRK02090, PRK02090, phosphoadenosine phosphosulfat	5e-89
TIGR02055	191	TIGR02055, APS_reductase, thioredoxin-dependent ad	1e-82
COG0175	261	COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfa	1e-62
cd02993	109	cd02993, PDI_a_APS_reductase, PDIa family, 5'-Aden	3e-61
pfam01507	173	pfam01507, PAPS_reduct, Phosphoadenosine phosphosu	2e-59
cd01713	173	cd01713, PAPS_reductase, This domain is found in p	6e-52
TIGR00434	212	TIGR00434, cysH, phosophoadenylyl-sulfate reductas	2e-43
TIGR02057	226	TIGR02057, PAPS_reductase, phosphoadenosine phosph	9e-35
cd02961	101	cd02961, PDI_a_family, Protein Disulfide Isomerase	5e-21
cd02998	105	cd02998, PDI_a_ERp38, PDIa family, endoplasmic ret	7e-18
cd02995	104	cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal T	2e-15
cd03004	104	cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ER	2e-15
TIGR01126	102	TIGR01126, pdi_dom, protein disulfide-isomerase do	9e-15
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	6e-13
pfam00085	104	pfam00085, Thioredoxin, Thioredoxin	4e-12
cd03001	103	cd03001, PDI_a_P5, PDIa family, P5 subfamily; comp	8e-12
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	1e-10
PTZ00443	224	PTZ00443, PTZ00443, Thioredoxin domain-containing	5e-08
cd03005	102	cd03005, PDI_a_ERp46, PDIa family, endoplasmic ret	2e-07
PRK13795	636	PRK13795, PRK13795, hypothetical protein; Provisio	3e-07
cd03000	104	cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily;	3e-07
PTZ00102	477	PTZ00102, PTZ00102, disulphide isomerase; Provisio	7e-07
cd03002	109	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like su	3e-06
PRK13794	479	PRK13794, PRK13794, hypothetical protein; Provisio	3e-06
cd02997	104	cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily;	8e-06
TIGR01130	462	TIGR01130, ER_PDI_fam, protein disulfide isomerase	1e-05
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	5e-05
cd01659	69	cd01659, TRX_superfamily, Thioredoxin (TRX) superf	1e-04
cd03003	101	cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ER	2e-04
TIGR01068	101	TIGR01068, thioredoxin, thioredoxin	2e-04
cd02994	101	cd02994, PDI_a_TMX, PDIa family, TMX subfamily; co	2e-04
PRK08557	417	PRK08557, PRK08557, hypothetical protein; Provisio	5e-04
PRK08576	438	PRK08576, PRK08576, hypothetical protein; Provisio	0.002
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	0.002

>gnl|CDD|215175 PLN02309, PLN02309, 5'-adenylylsulfate reductase

 Score =  772 bits (1994), Expect = 0.0
 Identities = 306/361 (84%), Positives = 338/361 (93%), Gaps = 5/361 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYR FD VEKH+
Sbjct: 102 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHY 161

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD
Sbjct: 162 GIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 221

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTR+E+PVVQVDPVFEGL+GG GSLVKWNP+ANV GN++WNFLRTMDVP+NSLH+QG
Sbjct: 222 QSPGTRAEVPVVQVDPVFEGLDGGPGSLVKWNPLANVTGNEVWNFLRTMDVPVNSLHAQG 281

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE 240
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK+ED     NG    N + 
Sbjct: 282 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEED-----NGAANDNGNA 336

Query: 241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG 300
           AVADIFNSQN+V L+R G+ENL +L++R+EPWLVVLYAPWC FCQAME SY ELA+KLAG
Sbjct: 337 AVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG 396

Query: 301 NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           +GVKV KFRADGDQKE+AKQ+LQLGSFPTIL FPK+SS+PIKYPSE+RDVDSL++FV++L
Sbjct: 397 SGVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456

Query: 361 R 361
           R
Sbjct: 457 R 457

Length = 457

>gnl|CDD|232970 TIGR00424, APS_reduc, 5'-adenylylsulfate reductase, thioredoxin-independent

 Score =  720 bits (1860), Expect = 0.0
 Identities = 313/363 (86%), Positives = 342/363 (94%), Gaps = 8/363 (2%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           MD+ALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD VEK +
Sbjct: 107 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQY 166

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKD
Sbjct: 167 GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKD 226

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRSEIPVVQVDPVFEGL+GGVGSLVKWNPVANV+G D+WNFLRTMDVP+N+LH+QG
Sbjct: 227 QSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGKDVWNFLRTMDVPVNTLHAQG 286

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQE--DAAVNGNGNGAGNA 238
           Y+SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK+E  D AVNGNG      
Sbjct: 287 YVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEETLDGAVNGNG------ 340

Query: 239 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 298
           S+AVADIF+S N+V+L+R G+ENL +L+ R+E WLVVLYAPWC FCQAME SY+ELA+KL
Sbjct: 341 SDAVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKL 400

Query: 299 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
           AG+GVKV KFRADGDQKE+AKQ+LQLGSFPTILFFPKHSS+PIKYPSE+RDVDSLM+FV+
Sbjct: 401 AGSGVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVN 460

Query: 359 ALR 361
            LR
Sbjct: 461 LLR 463

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis [Central intermediary metabolism, Sulfur metabolism]. Length = 463

>gnl|CDD|234997 PRK02090, PRK02090, phosphoadenosine phosphosulfate reductase; Provisional

 Score =  267 bits (684), Expect = 5e-89
 Identities = 101/220 (45%), Positives = 130/220 (59%), Gaps = 14/220 (6%)

Query: 4   ALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 62
           ALE FG  +A+  S GAED  L+           V  LDTG L PETYRF DE+ +   +
Sbjct: 35  ALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLL 94

Query: 63  RIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQS 122
            ++   PDA   +   R  GL+    +   ECCR+RKV PL RAL GL AWITG R++QS
Sbjct: 95  NLKVYRPDASAAEQEARYGGLWEQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQS 154

Query: 123 PGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYI 182
             TR+ +PV+++D          G   K NP+A+    D+W +L+  D+P + L  QGY 
Sbjct: 155 G-TRANLPVLEID----------GGRFKINPLADWTNEDVWAYLKEHDLPYHPLVDQGYP 203

Query: 183 SIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIK 222
           SIGCEPCTRPV PG+ ER GR WW   K KECGLH+GN+ 
Sbjct: 204 SIGCEPCTRPVEPGEDERAGR-WWGGLK-KECGLHEGNLP 241

Length = 241

>gnl|CDD|233701 TIGR02055, APS_reductase, thioredoxin-dependent adenylylsulfate APS reductase

 Score =  249 bits (637), Expect = 1e-82
 Identities = 95/200 (47%), Positives = 125/200 (62%), Gaps = 9/200 (4%)

Query: 17  SGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA 76
            GAEDV L++ A       +VF LDTGRL  ETY   D+V + + I I+ + P  + V+ 
Sbjct: 1   LGAEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEE 60

Query: 77  LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP 136
            V+  GL  FY     ECC +RKV PL+RAL G+ AWITG R+DQSP TR++ P +++D 
Sbjct: 61  QVKEYGLNLFYRSVPHECCGIRKVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEID- 118

Query: 137 VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPG 196
                      LVK NP+A+    D+W ++   ++P N LH +GY SIGCEPCTRPV PG
Sbjct: 119 -------EAFGLVKINPLADWTSEDVWEYIADNELPYNPLHDRGYPSIGCEPCTRPVAPG 171

Query: 197 QHEREGRWWWEDAKAKECGL 216
           +  R GRWWWE+A  KECGL
Sbjct: 172 EDPRAGRWWWEEAAKKECGL 191

This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster [Central intermediary metabolism, Sulfur metabolism]. Length = 191

>gnl|CDD|223253 COG0175, CysH, 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]

 Score =  200 bits (511), Expect = 1e-62
 Identities = 84/221 (38%), Positives = 120/221 (54%), Gaps = 14/221 (6%)

Query: 4   ALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 62
           A E+F N + ++FS G +   L+  A      F V  LDTG   PETY F D + + +G+
Sbjct: 34  AAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEYGL 93

Query: 63  RIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKD 120
            ++   PD    +      G   +     + CC +RKV PL+RAL      AW TG R+D
Sbjct: 94  DLKVYRPDDEVAEG--EKYGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRD 151

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           +SP TR+++PVV  D  F          ++ NP+A+    D+W ++   ++P N L+ QG
Sbjct: 152 ESP-TRAKLPVVSFDSEFGES-------IRVNPLADWTELDVWLYILANNLPYNPLYDQG 203

Query: 181 YISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGLHKGN 220
           Y SIGC PCTRPV P  + ER GRW  E A+  ECGLH+ +
Sbjct: 204 YRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGLHRAD 244

Length = 261

>gnl|CDD|239291 cd02993, PDI_a_APS_reductase, PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

 Score =  191 bits (487), Expect = 3e-61
 Identities = 73/108 (67%), Positives = 90/108 (83%)

Query: 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 309
            +VTL+R  +E LA+ + R +  LVVLYAPWC FCQAME SY ELA+KLAG+ VKV KF 
Sbjct: 2   AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFN 61

Query: 310 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           ADG+Q+E+AK++LQL SFPTILFFPK+S +PIKYPSE+RDVDSL+ FV
Sbjct: 62  ADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH -> C-terminal TRX domain -> N-terminal reductase domain -> APS. Plant-type APS reductase shows no homology to that of dissimilatory sulfate-reducing bacteria, which is an iron-sulfur flavoenzyme. Also included in the alignment is EYE2 from Chlamydomonas reinhardtii, a protein required for eyespot assembly. Length = 109

>gnl|CDD|201832 pfam01507, PAPS_reduct, Phosphoadenosine phosphosulfate reductase family

 Score =  189 bits (482), Expect = 2e-59
 Identities = 68/184 (36%), Positives = 103/184 (55%), Gaps = 15/184 (8%)

Query: 12  IAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD 70
           + ++FS G + + L+  A     P  V  +DTG   PETY F DE+E+ +G+ ++   P+
Sbjct: 2   LVVSFSGGKDSLVLLHLASKAFPPGPVIFIDTGYEFPETYEFVDELEEKYGLNLKVYLPE 61

Query: 71  AVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSE 128
               + +       S Y    + CCR+RKV PL+RALK  G  AW TG R+D+SP +R++
Sbjct: 62  DSFAEGINPEGIPSSLY----RRCCRLRKVEPLKRALKELGFDAWFTGLRRDESP-SRAK 116

Query: 129 IPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEP 188
           +P+V +D  F  +       +K  P+ N    D+W ++   +VP N L+ QGY SIGC P
Sbjct: 117 LPIVSIDGDFPKV-------IKVFPLLNWTETDVWQYILANNVPYNPLYDQGYRSIGCYP 169

Query: 189 CTRP 192
           CT P
Sbjct: 170 CTGP 173

This domain is found in phosphoadenosine phosphosulfate (PAPS) reductase enzymes or PAPS sulfotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP). It is also found in NodP nodulation protein P from Rhizobium which has ATP sulfurylase activity (sulfate adenylate transferase). Length = 173

>gnl|CDD|238846 cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase

 Score =  169 bits (431), Expect = 6e-52
 Identities = 62/181 (34%), Positives = 86/181 (47%), Gaps = 14/181 (7%)

Query: 11  DIAIAFS-GAEDVALIEYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEY 66
           ++ ++FS G +   L+  A        P  V  LDTG   PETY F D V + +G+ +  
Sbjct: 1   NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVV 60

Query: 67  MFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPG 124
           + P     + L      F       + CCR+ KV PLRRALK L   AWITG R+D+S  
Sbjct: 61  VRPPDSPAEGLALGLKGFPLPSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESAR 120

Query: 125 TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISI 184
                 V   D        G G ++K NP+ +    D+W +L    +P N L+ QGY SI
Sbjct: 121 RALLPVVWTDD--------GKGGILKVNPLLDWTYEDVWAYLARHGLPYNPLYDQGYRSI 172

Query: 185 G 185
           G
Sbjct: 173 G 173

PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase activity (sulphate adenylate transferase) . Length = 173

>gnl|CDD|129526 TIGR00434, cysH, phosophoadenylyl-sulfate reductase (thioredoxin)

 Score =  149 bits (377), Expect = 2e-43
 Identities = 74/218 (33%), Positives = 107/218 (49%), Gaps = 18/218 (8%)

Query: 4   ALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI 62
           A   FG  +  + S G +   L++          V  LDTG   PETY   DE+ + + +
Sbjct: 8   AYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPL 67

Query: 63  RIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKD 120
            I+   PD     A   +K     +E    +   +RKV P+ RALK L   AW TG R+D
Sbjct: 68  NIKVYKPD--LSLAEQAAKYGDKLWEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRD 125

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           Q P +R+ + ++ +D  F         ++K  P+ +    D++ ++   ++P N LH QG
Sbjct: 126 QGP-SRANLSILNIDEKFG--------ILKVLPLIDWTWKDVYQYIDAHNLPYNPLHDQG 176

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAK-ECGLH 217
           Y SIG    TRPV  G+ ER GRW     KAK ECGLH
Sbjct: 177 YPSIGDYHSTRPVKEGEDERAGRW---KGKAKTECGLH 211

This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS [Central intermediary metabolism, Sulfur metabolism]. Length = 212

>gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate reductase, thioredoxin dependent

 Score =  126 bits (319), Expect = 9e-35
 Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 17/188 (9%)

Query: 34  PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE 93
              V  +DT    P+T    DE+ K +   +     D  E +A   +K           E
Sbjct: 52  MIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGCESEADFEAK-YGKLLWQKDIE 110

Query: 94  CC-RVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK 150
               + KV P++RALK L   AW TG+R+DQ    R+ +PV+++D            ++K
Sbjct: 111 KYDYIAKVEPMQRALKELNASAWFTGRRRDQG-SARANLPVIEID--------EQNGILK 161

Query: 151 WNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAK 210
            NP+ +     ++ +L   +VP N L  QGY SIG    TR V  G+ ER GRW     K
Sbjct: 162 VNPLIDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK---GK 218

Query: 211 AK-ECGLH 217
            K ECG+H
Sbjct: 219 LKTECGIH 226

Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite [Central intermediary metabolism, Sulfur metabolism]. Length = 226

>gnl|CDD|239259 cd02961, PDI_a_family, Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

 Score = 86.5 bits (215), Expect = 5e-21
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 7/107 (6%)

Query: 252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRA 310
           V L     +N   L    +  LV  YAPWC  C+A+   Y +LA +L G+G V V K   
Sbjct: 1   VELTD---DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDC 57

Query: 311 DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
             +    ++  ++   +PTI  FP  S +P+KY    R ++SL+ F+
Sbjct: 58  TANNDLCSEYGVR--GYPTIKLFPNGSKEPVKYEGP-RTLESLVEFI 101

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies are necessary for the isomerase function. The different types of PDIs may show different substrate specificities and tissue-specific expression, or may be induced by stress. PDIs are in their reduced form at steady state and are oxidized to the active form by Ero1, which is localized in the ER through ERp44. Some members of this family also contain a DnaJ domain in addition to the redox active a domains; examples are ERdj5 and Pfj2. Also included in the family is the redox inactive N-terminal TRX-like domain of ERp29. Length = 101

>gnl|CDD|239296 cd02998, PDI_a_ERp38, PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

 Score = 77.7 bits (192), Expect = 7e-18
 Identities = 36/86 (41%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
           LV  YAPWC  C+ +   Y +LA   A  + V + K  AD   K+ AK K  +  FPT+ 
Sbjct: 22  LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAK-KYGVSGFPTLK 80

Query: 332 FFPKHSSKPIKYPSERRDVDSLMAFV 357
           FFPK S++P+KY    RD++ L+ FV
Sbjct: 81  FFPKGSTEPVKY-EGGRDLEDLVKFV 105

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ERp38, respectively. Also included in the alignment is an atypical PDI from Leishmania donovani containing a single a domain, and the C-terminal a domain of a P5-like protein from Entamoeba histolytica. Length = 105

>gnl|CDD|239293 cd02995, PDI_a_PDI_a'_C, PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

 Score = 71.4 bits (176), Expect = 2e-15
 Identities = 36/87 (41%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
           LV  YAPWC  C+A+   Y ELA+KL G + V + K   D    +   + +  G FPTIL
Sbjct: 22  LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKM--DATANDVPSEFVVDG-FPTIL 78

Query: 332 FFPK-HSSKPIKYPSERRDVDSLMAFV 357
           FFP    S PIKY  + R ++ L+ F+
Sbjct: 79  FFPAGDKSNPIKYEGD-RTLEDLIKFI 104

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins, while PDI shows a wider substrate specificity. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. EFP1 is a binding partner protein of thyroid oxidase, which is responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. Length = 104

>gnl|CDD|239302 cd03004, PDI_a_ERdj5_C, PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA 310
           ++TL       L    +R+EPWLV  YAPWC  CQA+     + A  L G  VKVG    
Sbjct: 3   VITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSV-- 57

Query: 311 DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           D  + E   Q+  + ++PTI  +P ++SK   Y    RD DS++ F+
Sbjct: 58  DCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus. Length = 104

>gnl|CDD|200074 TIGR01126, pdi_dom, protein disulfide-isomerase domain

 Score = 69.2 bits (170), Expect = 9e-15
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSFP 328
           +  LV  YAPWC  C+ +   Y +LA +L  +  + + K  A  ++   ++  +    FP
Sbjct: 14  KDVLVEFYAPWCGHCKNLAPEYEKLAKELKKDPDIVLAKVDATAEKDLASRFGVS--GFP 71

Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
           TI FFPK   KP+ Y    RD+++++ FV+
Sbjct: 72  TIKFFPK-GKKPVDYEGG-RDLEAIVEFVN 99

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK [Protein fate, Protein folding and stabilization]. Length = 102

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 4/87 (4%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           LV  YAPWC  C+ +   Y ELA+K       V   + D    +    +++   FPTI F
Sbjct: 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVPPFEVE--GFPTIKF 425

Query: 333 FPKHS-SKPIKYPSERRDVDSLMAFVD 358
            P    S+P+ Y  + R ++    F+ 
Sbjct: 426 VPAGKKSEPVPYDGD-RTLEDFSKFIA 451

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|215704 pfam00085, Thioredoxin, Thioredoxin

 Score = 61.5 bits (150), Expect = 4e-12
 Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           +P LV  YAPWC  C+A+   Y +LA +   + VK  K  AD +  + A +   +  FPT
Sbjct: 19  KPVLVDFYAPWCGPCKALAPEYEKLAQEYKDD-VKFAKVDAD-ENPDLASE-YGVRGFPT 75

Query: 330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           I FF     K   Y    R  D L+AF+   
Sbjct: 76  IKFFKN-GKKVSDY-VGARTKDDLVAFIKKH 104

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Some members with only the active site are not separated from the noise. Length = 104

>gnl|CDD|239299 cd03001, PDI_a_P5, PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

 Score = 60.8 bits (148), Expect = 8e-12
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
            + WLV  YAPWC  C+ +   + + A  L G  VKVG   AD  Q    +  ++   FP
Sbjct: 18  DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADVHQSLAQQYGVR--GFP 74

Query: 329 TILFFPKHSSKPIKYPSERR 348
           TI  F    + P  Y   R 
Sbjct: 75  TIKVFGAGKNSPQDYQGGRT 94

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain. Length = 103

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
           L+ +YAPWC  C+ +E  Y EL +K   N  + V K   +G   E   ++    +FPTIL
Sbjct: 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKM--NGTANETPLEEFSWSAFPTIL 436

Query: 332 FFPKHSSKPIKYPSERRDVDSLMAFV 357
           F       PI Y  E R V+    FV
Sbjct: 437 FVKAGERTPIPYEGE-RTVEGFKEFV 461

Length = 477

>gnl|CDD|185622 PTZ00443, PTZ00443, Thioredoxin domain-containing protein; Provisional

 Score = 52.7 bits (126), Expect = 5e-08
 Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 235 AGNASEAVADIFNSQNLVTLNRTGMENL--ARLDHRQEPWLVVLYAPWCQFCQAMEGSYV 292
           A  A+    D  ++  LV LN    E L  A       PW V  YAPWC  C+ M  ++ 
Sbjct: 16  ADEATNVKLDAEDANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWE 75

Query: 293 ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 352
            LA  L G   +V     D  +     ++  +  +PT+L F     K  +Y    R  + 
Sbjct: 76  RLAKALKG---QVNVADLDATRALNLAKRFAIKGYPTLLLF--DKGKMYQYEGGDRSTEK 130

Query: 353 LMAF 356
           L AF
Sbjct: 131 LAAF 134

Length = 224

>gnl|CDD|239303 cd03005, PDI_a_ERp46, PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
            V  +APWC  C+ +  ++ +LA K       VK+ K   D  Q      + Q+  +PT+
Sbjct: 20  FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAK--VDCTQHRELCSEFQVRGYPTL 77

Query: 331 LFFPKHSSKPIKYPSERRDVDSLMAFV 357
           L F K   K  KY    RD+DSL  FV
Sbjct: 78  LLF-KDGEKVDKY-KGTRDLDSLKEFV 102

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia. Length = 102

>gnl|CDD|237510 PRK13795, PRK13795, hypothetical protein; Provisional

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 35/198 (17%)

Query: 6   EKFGNDIAIAFSGAED--VALIEYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           EK+   ++++FSG +D  V L     L     + F+ F  +TG   PET     EV + +
Sbjct: 240 EKYNLPVSVSFSGGKDSLVVL----DLAREALKDFKAFFNNTGLEFPETVENVKEVAEEY 295

Query: 61  GIRIEYM-----FPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAW 113
           GI +        F  AVE          F      ++ CC+V K+ P+ RA+K    +  
Sbjct: 296 GIELIEADAGDAFWRAVEK---------FGPPARDYRWCCKVCKLGPITRAIKENFPKGC 346

Query: 114 IT--GQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDV 171
           +T  GQRK +S  +R++ P V  +P        V + +  +P+ +    ++W ++    +
Sbjct: 347 LTFVGQRKYES-FSRAKSPRVWRNPW-------VPNQIGASPIQDWTALEVWLYIFWRKL 398

Query: 172 PINSLHSQGYISIGCEPC 189
           P N L+ +G+  IGC  C
Sbjct: 399 PYNPLYERGFDRIGCWLC 416

Length = 636

>gnl|CDD|239298 cd03000, PDI_a_TMX3, PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

 Score = 47.8 bits (114), Expect = 3e-07
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 265 LDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQK 321
            D R+E  WLV  YAPWC  C+ +E  + E+  +L  +G  V+VGK   D         +
Sbjct: 10  KDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKL--DATAYSSIASE 67

Query: 322 LQLGSFPTILFF 333
             +  +PTI   
Sbjct: 68  FGVRGYPTIKLL 79

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase. Length = 104

>gnl|CDD|240266 PTZ00102, PTZ00102, disulphide isomerase; Provisional

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLA--GNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LV  YAPWC  C+ +   Y + A  L    + + +    A  +  E A Q+  +  +PTI
Sbjct: 53  LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-ELA-QEFGVRGYPTI 110

Query: 331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
            FF K    P+ Y    R  D +++++  L
Sbjct: 111 KFFNK--GNPVNYSGG-RTADGIVSWIKKL 137

Length = 477

>gnl|CDD|239300 cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

 Score = 45.0 bits (107), Expect = 3e-06
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           LV  YAPWC  C+ ++  Y + A +L G  V+V     D D+ +    K  +  FPT+  
Sbjct: 22  LVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDEDKNKPLCGKYGVQGFPTLKV 80

Query: 333 FP------KHSSKPIKYPSERRDVDSLMAFV 357
           F       KH+ +        +   +++ FV
Sbjct: 81  FRPPKKASKHAVEDYNGERSAK---AIVDFV 108

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity. Length = 109

>gnl|CDD|237509 PRK13794, PRK13794, hypothetical protein; Provisional

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 39/200 (19%)

Query: 6   EKFGNDIAIAFSGAED--VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR 63
           EK    + +A+SG +D    L+      G  F V   DTG   PET    ++VEKH+G+ 
Sbjct: 244 EKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLE 303

Query: 64  IEYMFPDAVEVQALVRSKGLFSFYEDGHQE---------CCRVRKVRPLRRAL-----KG 109
           I             +R+K    F+E   +          C  V K+ PL + +       
Sbjct: 304 I-------------IRTKSE-EFWEKLEEYGPPARDNRWCSEVCKLEPLGKLIDEKYEGE 349

Query: 110 LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTM 169
             +++ GQRK +S   RS+ P +  +P    ++  + +     P+ +     +W +L   
Sbjct: 350 CLSFV-GQRKYES-FNRSKKPRIWRNPY---IKKQILAA----PILHWTAMHVWIYLFRE 400

Query: 170 DVPINSLHSQGYISIGCEPC 189
             P N L+ QG+  IGC  C
Sbjct: 401 KAPYNKLYEQGFDRIGCFMC 420

Length = 479

>gnl|CDD|239295 cd02997, PDI_a_PDIR, PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

 Score = 43.8 bits (104), Expect = 8e-06
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG------VKVGKFRADGD 313
           E+  +   +++  LV+ YAPWC  C+ M+  + + A +L  +G      V   K   D  
Sbjct: 8   EDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDAL 67

Query: 314 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR 348
           ++EY  +      FPT  +F        KY  ER 
Sbjct: 68  KEEYNVK-----GFPTFKYFENGKFV-EKYEGERT 96

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. Length = 104

>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LV  YAPWC  C+++   Y + AD+L   G  +K+ K  A  ++K+ A QK  +  +PT+
Sbjct: 22  LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT-EEKDLA-QKYGVSGYPTL 79

Query: 331 LFFPKHSSKPIKY 343
             F         Y
Sbjct: 80  KIFRNGEDSVSDY 92

This model represents eukaryotic protein disulfide isomerases retained in the endoplasmic reticulum (ER) and closely related forms. Some members have been assigned alternative or additional functions such as prolyl 4-hydroxylase and dolichyl-diphosphooligosaccharide-protein glycotransferase. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs). Length = 462

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 4/74 (5%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 319
           E    L    +P +V  +APWC  C+A+     ELA++     VK  K   D +  E A 
Sbjct: 1   EEFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD-ENPELA- 56

Query: 320 QKLQLGSFPTILFF 333
           ++  + S PT LFF
Sbjct: 57  EEYGVRSIPTFLFF 70

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|238829 cd01659, TRX_superfamily, Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-EYAKQKLQLGSFPTIL 331
           LV+ YAPWC FCQA+     ELA      GVK      D D   E   ++  +G  PT++
Sbjct: 1   LVLFYAPWCPFCQALRPVLAELALLNK--GVKFEAVDVDEDPALEKELKRYGVGGVPTLV 58

Query: 332 FF 333
            F
Sbjct: 59  VF 60

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others. Length = 69

>gnl|CDD|239301 cd03003, PDI_a_ERdj5_N, PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 8/108 (7%)

Query: 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 308
             +VTL+R   +      +  E W V  Y+P C  C  +  ++ E A ++ G  +++G  
Sbjct: 1   PEIVTLDRGDFD---AAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAV 56

Query: 309 RADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAF 356
              GD +   + +  + S+P++  FP     P KY  + R  +SL+ F
Sbjct: 57  NC-GDDRMLCRSQ-GVNSYPSLYVFPS-GMNPEKYYGD-RSKESLVKF 100

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Length = 101

>gnl|CDD|200072 TIGR01068, thioredoxin, thioredoxin

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           +P LV  +APWC  C+ +     ELA +  G  VK  K   D +  + A  K  + S PT
Sbjct: 15  KPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVD-ENPDIA-AKYGIRSIPT 71

Query: 330 ILFFPK 335
           +L F  
Sbjct: 72  LLLFKN 77

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by This model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin [Energy metabolism, Electron transport]. Length = 101

>gnl|CDD|239292 cd02994, PDI_a_TMX, PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 9/88 (10%)

Query: 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
           W++  YAPWC  CQ ++  + E AD     G+ V K   D  Q+     +  + + PTI 
Sbjct: 19  WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAK--VDVTQEPGLSGRFFVTALPTIY 76

Query: 332 FFPKHSSKPI--KYPSERRDVDSLMAFV 357
               H+   +  +Y    RD + L++F+
Sbjct: 77  ----HAKDGVFRRYQGP-RDKEDLISFI 99

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC. Length = 101

>gnl|CDD|181465 PRK08557, PRK08557, hypothetical protein; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 37/196 (18%)

Query: 9   GNDIAIAFSGAEDVALIEY-AHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM 67
           G  I  +FSG +D ++    A        V  +DTG   PET  +  +  K + + ++  
Sbjct: 181 GYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLD-- 238

Query: 68  FPDAVEVQALVRSKGLFSFYEDGHQE---------CCRVRKVRPLRRALKGLRAW----- 113
                     +      +F+E+  +E         C    K+ PL+  LK          
Sbjct: 239 ---------TLDGD---NFWENLEKEGIPTKDNRWCNSACKLMPLKEYLKKKYGNKKVLT 286

Query: 114 ITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI 173
           I G RK +S  TR+ +        +E   G +       P+ +    DIW+++   D+  
Sbjct: 287 IDGSRKYES-FTRANLD-------YERKSGFIDFQTNVFPILDWNSLDIWSYIYLNDILY 338

Query: 174 NSLHSQGYISIGCEPC 189
           N L+ +G+  IGC  C
Sbjct: 339 NPLYDKGFERIGCYLC 354

Length = 417

>gnl|CDD|236300 PRK08576, PRK08576, hypothetical protein; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 28/194 (14%)

Query: 5   LEKFGN-DIAIAFSGAED--VALIEYAHLTGRPF---RVFSLDTGRLNPETYRFFDEVEK 58
           L KF    + + +SG +D   AL+    L  + F       +DTG   P T  + ++V +
Sbjct: 229 LRKFEEWTVIVPWSGGKDSTAALL----LAKKAFGDVTAVYVDTGYEMPLTDEYVEKVAE 284

Query: 59  HFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQE-CCRVRKVRPLRRALKGLR--AWIT 115
             G+ +       V+V   +   G+ +     H    C   KV  L  A++ L     + 
Sbjct: 285 KLGVDLIRA---GVDVPMPIEKYGMPT-----HSNRWCTKLKVEALEEAIRELEDGLLVV 336

Query: 116 GQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINS 175
           G R  +S   R   P     PV E        LV   P+    G  +  ++    + +N 
Sbjct: 337 GDRDGESA-RRRLRP-----PVVERKTNFGKILVV-MPIKFWSGAMVQLYILMNGLELNP 389

Query: 176 LHSQGYISIGCEPC 189
           L+ +G+  +GC  C
Sbjct: 390 LYYKGFYRLGCYIC 403

Length = 438

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           LV  +APWC  C+A      ELA++  G+   V     D +    A+  + + S PT+L 
Sbjct: 36  LVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLL 95

Query: 333 F 333
           F
Sbjct: 96  F 96

Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PLN02309	457	5'-adenylylsulfate reductase	100.0
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	100.0
TIGR02057	226	PAPS_reductase phosphoadenosine phosphosulfate red	100.0
TIGR00434	212	cysH phosophoadenylyl-sulfate reductase (thioredox	100.0
PRK02090	241	phosphoadenosine phosphosulfate reductase; Provisi	100.0
KOG0189	261	consensus Phosphoadenosine phosphosulfate reductas	100.0
TIGR02055	191	APS_reductase thioredoxin-dependent adenylylsulfat	100.0
COG0175	261	CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr	100.0
PRK12563	312	sulfate adenylyltransferase subunit 2; Provisional	100.0
TIGR02039	294	CysD sulfate adenylyltransferase, small subunit. I	100.0
PRK08557	417	hypothetical protein; Provisional	100.0
PF01507	174	PAPS_reduct: Phosphoadenosine phosphosulfate reduc	100.0
PRK05253	301	sulfate adenylyltransferase subunit 2; Provisional	100.0
PRK13794	479	hypothetical protein; Provisional	100.0
PRK13795	636	hypothetical protein; Provisional	100.0
PRK08576	438	hypothetical protein; Provisional	100.0
cd01713	173	PAPS_reductase This domain is found in phosphoaden	100.0
TIGR03183	447	DNA_S_dndC putative sulfurtransferase DndC. Member	99.98
PRK06850	507	hypothetical protein; Provisional	99.97
COG3969	407	Predicted phosphoadenosine phosphosulfate sulfotra	99.9
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.9
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.87
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.86
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.86
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.86
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.85
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.84
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.84
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.84
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.83
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.82
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.82
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.81
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.81
PHA02278	103	thioredoxin-like protein	99.8
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.8
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.8
PRK10996	139	thioredoxin 2; Provisional	99.8
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.8
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.79
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.79
PRK09381	109	trxA thioredoxin; Provisional	99.79
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.78
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.78
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.78
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.77
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.77
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.77
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.77
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	99.77
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.77
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.76
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.76
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.75
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.75
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.74
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.74
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.73
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.73
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.72
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.72
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.7
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.7
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.69
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.69
cd01992	185	PP-ATPase N-terminal domain of predicted ATPase of	99.68
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.66
PTZ00051	98	thioredoxin; Provisional	99.66
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.65
PTZ00102	477	disulphide isomerase; Provisional	99.65
PTZ00102	477	disulphide isomerase; Provisional	99.65
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	99.65
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.64
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.64
TIGR02432	189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	99.63
cd01993	185	Alpha_ANH_like_II This is a subfamily of Adenine n	99.63
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.62
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.6
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.6
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.59
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.59
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.57
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	99.56
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.53
PRK10696	258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	99.5
COG1606	269	ATP-utilizing enzymes of the PP-loop superfamily [	99.48
PF01171	182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	99.48
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.47
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.44
TIGR00268	252	conserved hypothetical protein TIGR00268. The N-te	99.44
cd01990	202	Alpha_ANH_like_I This is a subfamily of Adenine nu	99.43
PTZ00062	204	glutaredoxin; Provisional	99.41
COG0037	298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	99.4
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.4
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.37
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.37
cd01997	295	GMP_synthase_C The C-terminal domain of GMP synthe	99.36
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.35
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.34
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	99.33
cd01712	177	ThiI ThiI is required for thiazole synthesis in th	99.33
cd01995	169	ExsB ExsB is a transcription regulator related pro	99.32
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.32
PRK00143	346	mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	99.32
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.31
KOG2644	282	consensus 3'-phosphoadenosine 5'-phosphosulfate su	99.31
PHA02125	75	thioredoxin-like protein	99.3
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	99.29
PRK00074	511	guaA GMP synthase; Reviewed	99.29
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.29
TIGR00884	311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	99.28
PRK00919	307	GMP synthase subunit B; Validated	99.28
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.26
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.26
PRK14561	194	hypothetical protein; Provisional	99.26
TIGR00420	352	trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me	99.25
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.24
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.21
cd01998	349	tRNA_Me_trans tRNA methyl transferase. This family	99.21
PRK10660	436	tilS tRNA(Ile)-lysidine synthetase; Provisional	99.2
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.18
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.18
PRK14665	360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	99.18
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.17
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.17
PRK08349	198	hypothetical protein; Validated	99.15
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.14
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.13
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	99.11
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.11
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.1
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.08
PRK08384	381	thiamine biosynthesis protein ThiI; Provisional	99.06
TIGR00552	250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	99.05
TIGR00364	201	exsB protein. This protein family is represented b	99.05
PRK11106	231	queuosine biosynthesis protein QueC; Provisional	99.04
PLN02347	536	GMP synthetase	99.04
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	99.03
cd01996	154	Alpha_ANH_like_III This is a subfamily of Adenine	99.03
TIGR00032	394	argG argininosuccinate synthase. argG in bacteria,	99.02
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.01
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.01
PRK14664	362	tRNA-specific 2-thiouridylase MnmA; Provisional	99.01
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.01
PRK13820	394	argininosuccinate synthase; Provisional	99.0
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	98.99
PRK00509	399	argininosuccinate synthase; Provisional	98.99
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.99
cd00553	248	NAD_synthase NAD+ synthase is a homodimer, which c	98.98
cd01999	385	Argininosuccinate_Synthase Argininosuccinate synth	98.98
TIGR00342	371	thiazole biosynthesis/tRNA modification protein Th	98.96
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	98.96
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.96
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	98.95
PLN00200	404	argininosuccinate synthase; Provisional	98.95
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.94
smart00594	122	UAS UAS domain.	98.93
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.93
PRK04527	400	argininosuccinate synthase; Provisional	98.92
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.91
PRK13980	265	NAD synthetase; Provisional	98.91
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.88
PRK01565	394	thiamine biosynthesis protein ThiI; Provisional	98.85
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.83
PTZ00056	199	glutathione peroxidase; Provisional	98.82
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	98.78
TIGR03573	343	WbuX N-acetyl sugar amidotransferase. This enzyme	98.78
PLN02412	167	probable glutathione peroxidase	98.74
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.73
PF06508	209	QueC: Queuosine biosynthesis protein QueC; InterPr	98.72
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.71
COG2117	198	Predicted subunit of tRNA(5-methylaminomethyl-2-th	98.69
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	98.67
cd01994	194	Alpha_ANH_like_IV This is a subfamily of Adenine n	98.67
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.66
PF03054	356	tRNA_Me_trans: tRNA methyl transferase; InterPro:	98.63
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.62
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.6
PF01216	383	Calsequestrin: Calsequestrin; InterPro: IPR001393	98.6
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.59
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	98.59
COG2143	182	Thioredoxin-related protein [Posttranslational mod	98.58
PF13728	215	TraF: F plasmid transfer operon protein	98.54
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.53
COG0482	356	TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid	98.51
COG0603	222	Predicted PP-loop superfamily ATPase [General func	98.51
cd01986	103	Alpha_ANH_like Adenine nucleotide alpha hydrolases	98.49
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	98.47
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	98.44
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.41
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	98.4
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	98.39
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	98.38
KOG3425	128	consensus Uncharacterized conserved protein [Funct	98.38
PTZ00256	183	glutathione peroxidase; Provisional	98.37
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	98.36
KOG1672	211	consensus ATP binding protein [Posttranslational m	98.32
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	98.31
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	98.31
PF02568	197	ThiI: Thiamine biosynthesis protein (ThiI); InterP	98.3
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.29
PTZ00323	294	NAD+ synthase; Provisional	98.28
PF07912	126	ERp29_N: ERp29, N-terminal domain; InterPro: IPR01	98.28
TIGR03679	218	arCOG00187 arCOG00187 universal archaeal metal-bin	98.28
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	98.26
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.25
PF02540	242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	98.25
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.22
KOG2805	377	consensus tRNA (5-methylaminomethyl-2-thiouridylat	98.22
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	98.21
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	98.19
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	98.18
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.18
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	98.18
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	98.16
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.16
PRK13190	202	putative peroxiredoxin; Provisional	98.14
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	98.13
PRK00876	326	nadE NAD synthetase; Reviewed	98.12
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	98.12
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	98.09
PRK15000	200	peroxidase; Provisional	98.09
PRK05370	447	argininosuccinate synthase; Validated	98.06
PTZ00137	261	2-Cys peroxiredoxin; Provisional	97.97
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	97.97
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	97.94
PRK10606	183	btuE putative glutathione peroxidase; Provisional	97.94
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	97.93
PRK02628	679	nadE NAD synthetase; Reviewed	97.9
PRK11200	85	grxA glutaredoxin 1; Provisional	97.88
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	97.88
cd02981	97	PDI_b_family Protein Disulfide Isomerase (PDIb) fa	97.87
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	97.85
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	97.84
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	97.82
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	97.82
PRK13599	215	putative peroxiredoxin; Provisional	97.82
PRK13189	222	peroxiredoxin; Provisional	97.81
cd01991	269	Asn_Synthase_B_C The C-terminal domain of Asparagi	97.8
PF00764	388	Arginosuc_synth: Arginosuccinate synthase; InterPr	97.75
PRK13191	215	putative peroxiredoxin; Provisional	97.74
COG0519	315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	97.73
TIGR00290	223	MJ0570_dom MJ0570-related uncharacterized domain.	97.72
PRK13981	540	NAD synthetase; Provisional	97.72
KOG3170	240	consensus Conserved phosducin-like protein [Signal	97.66
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.65
KOG2840	347	consensus Uncharacterized conserved protein with s	97.62
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.61
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.61
PTZ00253	199	tryparedoxin peroxidase; Provisional	97.58
COG0137	403	ArgG Argininosuccinate synthase [Amino acid transp	97.58
cd03067	112	PDI_b_PDIR_N PDIb family, PDIR subfamily, N-termin	97.56
KOG3171	273	consensus Conserved phosducin-like protein [Signal	97.55
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.54
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	97.51
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	97.48
COG0301	383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	97.45
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	97.45
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	97.44
TIGR00289	222	conserved hypothetical protein TIGR00289. Homologo	97.36
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.34
PRK00768	268	nadE NAD synthetase; Reviewed	97.28
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.27
cd01984	86	AANH_like Adenine nucleotide alpha hydrolases supe	97.26
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	97.25
PRK10329	81	glutaredoxin-like protein; Provisional	97.23
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	97.2
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	97.2
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	97.17
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	97.14
PF00733	255	Asn_synthase: Asparagine synthase; InterPro: IPR00	97.13
TIGR01536	467	asn_synth_AEB asparagine synthase (glutamine-hydro	97.1
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	96.99
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	96.98
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.97
COG0171	268	NadE NAD synthase [Coenzyme metabolism]	96.95
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.95
PHA03050	108	glutaredoxin; Provisional	96.93
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	96.92
COG2102	223	Predicted ATPases of PP-loop superfamily [General	96.87
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.84
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	96.74
KOG1622	552	consensus GMP synthase [Nucleotide transport and m	96.73
COG1365	255	Predicted ATPase (PP-loop superfamily) [General fu	96.7
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.66
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	96.57
PF01902	218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	96.54
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	96.45
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	96.42
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	96.39
PRK10638	83	glutaredoxin 3; Provisional	96.3
cd03069	104	PDI_b_ERp57 PDIb family, ERp57 subfamily, first re	96.12
KOG2640	319	consensus Thioredoxin [Function unknown]	95.64
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	95.56
COG1331	667	Highly conserved protein containing a thioredoxin	95.53
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	95.32
PRK10824	115	glutaredoxin-4; Provisional	95.21
cd03066	102	PDI_b_Calsequestrin_middle PDIb family, Calsequest	95.02
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	95.02
KOG1706	412	consensus Argininosuccinate synthase [Amino acid t	94.53
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	94.53
TIGR03108	628	eps_aminotran_1 exosortase 1 system-associated ami	94.51
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	94.48
PTZ00062	204	glutaredoxin; Provisional	94.27
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	94.1
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	94.0
COG0367	542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	93.48
PLN02549	578	asparagine synthase (glutamine-hydrolyzing)	93.32
TIGR03104	589	trio_amidotrans asparagine synthase family amidotr	93.18
PLN02339	700	NAD+ synthase (glutamine-hydrolysing)	92.43
PTZ00077	586	asparagine synthetase-like protein; Provisional	92.37
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	91.88
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	91.73
cd03068	107	PDI_b_ERp72 PDIb family, ERp72 subfamily, first re	91.61
PRK09431	554	asnB asparagine synthetase B; Provisional	90.77
cd02978	72	KaiB_like KaiB-like family; composed of the circad	89.73
KOG0573	520	consensus Asparagine synthase [Amino acid transpor	88.95
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	88.83
PHA03075	123	glutaredoxin-like protein; Provisional	86.79
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	86.73
PF10281	38	Ish1: Putative stress-responsive nuclear envelope	86.63
cd03074	120	PDI_b'_Calsequestrin_C Protein Disulfide Isomerase	85.46
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	84.61
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	84.22
TIGR02654	87	circ_KaiB circadian clock protein KaiB. Members of	84.2
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	83.94
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	83.46
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	83.11
cd02974	94	AhpF_NTD_N Alkyl hydroperoxide reductase F subunit	83.09
cd02990	136	UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1	82.15
PRK09301	103	circadian clock protein KaiB; Provisional	81.69
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	81.04

>PLN02309 5'-adenylylsulfate reductase

Probab=100.00  E-value=4e-90  Score=651.28  Aligned_cols=355  Identities=85%  Similarity=1.448  Sum_probs=322.5

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      |+|+++.|++++++++|||+||+++||+.+.+++++|+|+|||++|||||+|+++++++||++|+++.|+....+++...
T Consensus       102 l~~a~~~~~~~ia~~~SG~ed~vll~l~~~~~~~ipV~flDTG~lfpETy~~~d~v~~~ygl~i~~~~P~~~~~~~~~~~  181 (457)
T PLN02309        102 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRLFDAVEKHYGIRIEYMFPDAVEVQALVRN  181 (457)
T ss_pred             HHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCCcchHHHHHHh
Confidence            57899999888999999999999999999999999999999999999999999999999999999999998777777888


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~  160 (361)
                      +|.+.++..++++||.++|++||+++++++++||||+|++||.+.|+.++++++|+.+++..++.++++|++||++||.+
T Consensus       182 ~g~~~~~~~~~~~Cc~irKVePL~raL~~~~awitG~Rr~Qs~~~Ra~l~~ve~d~~~~~~~~~~~~~lKvnPl~~Wt~~  261 (457)
T PLN02309        182 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRAEVPVVQVDPVFEGLDGGPGSLVKWNPLANVTGN  261 (457)
T ss_pred             cCccccccCChHHhhhhHhHHHHHHHHhhCCEEEEeeccccCccccccCCeeeecccccccccCCCCeeEEcccccCCHH
Confidence            89888877788999999999999999999999999999999943799999999998776555455679999999999999


Q ss_pred             HHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCccccccccCCCCCCCCCCc
Q 018045          161 DIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE  240 (361)
Q Consensus       161 dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  240 (361)
                      |||.||++|+|||||||++||.||||++||+|+.+|+++|+|||||++..|+|||||..+++...     +......+++
T Consensus       262 dVw~Yi~~~~lP~npL~~~GY~SIGC~pCT~pv~~g~~~RaGRw~w~~~~k~ECGlH~~~~~~~~-----~~~~~~~~~~  336 (457)
T PLN02309        262 EVWNFLRTMDVPVNSLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEED-----NGAANDNGNA  336 (457)
T ss_pred             HHHHHHHHcCCCCCcchhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCcccccCCCCCccccc-----cccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999987655433     3333455667


Q ss_pred             ccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHH
Q 018045          241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAK  319 (361)
Q Consensus       241 ~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~  319 (361)
                      ...+++++..|++|+.++|++++...+.++++||+||||||++|+.|.|.|+++++.+.+.++.|++||++ .+ .+++.
T Consensus       337 ~~~dl~~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~-~~la~  415 (457)
T PLN02309        337 AVADIFNSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQ-KEFAK  415 (457)
T ss_pred             ccccccCCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcc-hHHHH
Confidence            77899999999999999999998766789999999999999999999999999999998756999999999 66 88882


Q ss_pred             HcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          320 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      ++|+|.++||+++|++|...++.|.++.++.++|+.||++++
T Consensus       416 ~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~~  457 (457)
T PLN02309        416 QELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSLR  457 (457)
T ss_pred             hhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHhC
Confidence            369999999999999988778899876899999999999875

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=100.00  E-value=9.4e-90  Score=648.72  Aligned_cols=357  Identities=87%  Similarity=1.457  Sum_probs=318.3

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      |+|+++.|++++++++|||+||++|||+.+.+++++|+|+|||++|||||+|+++++++||++++++.|+....+++...
T Consensus       107 l~~a~~~f~~~iavasSG~edsvLlhl~~~~~~~ipV~flDTG~lFpETy~~~d~v~~~ygl~l~~~~p~~~~~~~~~~~  186 (463)
T TIGR00424       107 MDKALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKQYGIRIEYMFPDAVEVQALVRS  186 (463)
T ss_pred             HHHHHHhcCCCEEEEeccHHHHHHHHHHHHhCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCCcchHHHHHHh
Confidence            57899999889999999999999999999999999999999999999999999999999999999999987666777778


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN  160 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~  160 (361)
                      +|.+.++..++++||.++|++||+++++++++||||+|++||+++|+.++++++|+.+++..++.+++++++||++||.+
T Consensus       187 ~G~~~~~~~~~~~CC~irKVePL~raL~~~~awitG~Rr~Qs~~tRa~~~~ve~d~~~~~~~~~~~~~iKvnPLa~Wt~~  266 (463)
T TIGR00424       187 KGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGK  266 (463)
T ss_pred             cCcccCCcCChHHHhhHHhHHHHHHHHHhCCcEEeeeccccCccccccCCcccccccccccccCCCceEEEeecccCCHH
Confidence            88888877788999999999999999999999999999999944799999999997665444344569999999999999


Q ss_pred             HHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCccccccccCCCCCCCCCCc
Q 018045          161 DIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGNGAGNASE  240 (361)
Q Consensus       161 dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~  240 (361)
                      |||.||.+|+|||||||++||.||||++||+|+.+|+++|+|||||++..|+|||||..+++...    .+.+....++.
T Consensus       267 dVw~Yi~~~~LP~npL~~~GY~SIGC~pCT~pv~~ged~RaGRW~w~~~~k~ECGlH~~~~~~~~----~~~~~~~~~~~  342 (463)
T TIGR00424       267 DVWNFLRTMDVPVNTLHAQGYVSIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKEET----LDGAVNGNGSD  342 (463)
T ss_pred             HHHHHHHHcCCCCCchhhcCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCCCCCCccccc----cchhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999987544322    22333345777


Q ss_pred             ccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHH
Q 018045          241 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQ  320 (361)
Q Consensus       241 ~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~  320 (361)
                      .+.+++++..|.+|+.+||+++++..+.++++||.||||||++|+.|.|.|+++++.+++.++.|++||++.+...++.+
T Consensus       343 ~~~dl~~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~  422 (463)
T TIGR00424       343 AVADIFDSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQ  422 (463)
T ss_pred             ccccccCCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHH
Confidence            88999999999999999999998656789999999999999999999999999999998745899999999762344426


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      +|+|.++||+++|++|+..++.|.++.++.+.|..||+.++
T Consensus       423 ~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~~  463 (463)
T TIGR00424       423 ELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLLR  463 (463)
T ss_pred             HcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhhC
Confidence            89999999999999997668889866899999999999875

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent

Probab=100.00  E-value=2.4e-58  Score=402.60  Aligned_cols=204  Identities=27%  Similarity=0.446  Sum_probs=178.0

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcC-CCceEEEccCCCCcHHHHHHHHHHHHHhC--CcEEEEcCChHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFG--IRIEYMFPDAVEVQA   76 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g--~~i~~~~p~~~~~~~   76 (361)
                      |+|+++.|+++++++|||||||+|| ||+.++. ++++|||+|||.+||||++|+++++++||  +++.++.|... ...
T Consensus        17 l~~~~~~~~~~~~~s~S~Gkds~VlL~l~~~~~~~~i~vv~vDTg~~fpET~e~~d~~~~~~~~~l~v~~~~~~~~-~~~   95 (226)
T TIGR02057        17 IAWSIVTFPHGLVQTSAFGIQALVTLHLLSSISEPMIPVIFIDTLYHFPQTLTLKDELTKKYYQTLNLYKYDGCES-EAD   95 (226)
T ss_pred             HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhhCCCCCEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEEeCCchh-HHH
Confidence            4788999988899999999999766 9999987 89999999999999999999999999999  55555555543 233


Q ss_pred             HHHhcCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045           77 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV  154 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi  154 (361)
                      +....|.+.+ ..+...||.++|++|++++++++  ++||+|+|++||. .|+.++.++.+..        ++.++++||
T Consensus        96 ~~~~~G~~~~-~~~~~~cc~~~Kv~Pl~ral~~~~~~~~itG~Rr~es~-~Ra~~~~~~~d~~--------~~~~kv~Pi  165 (226)
T TIGR02057        96 FEAKYGKLLW-QKDIEKYDYIAKVEPMQRALKELNASAWFTGRRRDQGS-ARANLPVIEIDEQ--------NGILKVNPL  165 (226)
T ss_pred             HHHhcCCCcc-ccCHHHHHHHHhhHHHHHHHHhcCCCEEEEecchhhCc-cccCCccccccCC--------CCeEEEeeh
Confidence            4445565433 44678899999999999999974  5899999999996 9999999887642        468999999


Q ss_pred             ccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCC
Q 018045          155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLH  217 (361)
Q Consensus       155 ~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~  217 (361)
                      ++||..|||.||.+++|||||||++||+||||++||.|+.+|+++|+|||+  +..|+|||||
T Consensus       166 ~~Wt~~dVw~Yi~~~~lP~npLY~~GY~siGc~~cT~~v~~~~~~R~gRw~--~~~~~eCglh  226 (226)
T TIGR02057       166 IDWTFEQVYQYLDAHNVPYNPLLDQGYRSIGDYHSTRKVKEGEDERAGRWK--GKLKTECGIH  226 (226)
T ss_pred             hhCCHHHHHHHHHHcCCCCCchhhcCCCCCCCCCcCCCCCCCCCccCccCC--CCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999985  5568999998

Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.

>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin)

Probab=100.00  E-value=1.7e-56  Score=390.80  Aligned_cols=205  Identities=33%  Similarity=0.559  Sum_probs=181.5

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      |++++++|+++++|+|||||||+|| ||+.+..++++|+|+|||.+||||++|+++++++||+++++++|.... .....
T Consensus         5 l~~a~~~~~~~~~~s~SgGKDS~Vll~L~~~~~~~~~v~f~DTg~efpeT~efv~~~~~~~~l~i~~~~~~~~~-~~~~~   83 (212)
T TIGR00434         5 IAWAYVTFGGHLVYSTSFGIQGAVLLDLVSKISPDIPVIFLDTGYHFPETYELIDELTERYPLNIKVYKPDLSL-AEQAA   83 (212)
T ss_pred             HHHHHHhcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEECCchhH-HHHHH
Confidence            5789999988999999999999877 999999999999999999999999999999999999999999987553 33344


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      ..|... +..++++||.++|+.|+++++++..  +|++|+|++||+ +|+++...+.+..        .+.++++||++|
T Consensus        84 ~~g~~~-~~~~~~~cc~~~K~~pl~~~l~~~~~~~~i~GiR~~Es~-~R~~~~~~~~~~~--------~~~~~v~PI~dW  153 (212)
T TIGR00434        84 KYGDKL-WEQDPNKYDYLRKVEPMHRALKELHASAWFTGLRRDQGP-SRANLSILNIDEK--------FGILKVLPLIDW  153 (212)
T ss_pred             hcCCCc-cccChHHHhhHHhHHHHHHHHHhcCCcEEEEecccccCc-cccCCceeeecCC--------CCcEEEeehhhC
Confidence            555332 3446789999999999999999765  999999999997 9999887765532        367899999999


Q ss_pred             cHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCC
Q 018045          158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHK  218 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~  218 (361)
                      ++.|||+||.+++|||||||++||+|+||++||.|+.+|+++|+|||+  +..|+|||||.
T Consensus       154 t~~dVw~Yi~~~~lp~npLY~~Gy~siGc~~ct~~~~~~~~~r~gr~~--~~~~~ecg~~~  212 (212)
T TIGR00434       154 TWKDVYQYIDAHNLPYNPLHDQGYPSIGDYHSTRPVKEGEDERAGRWK--GKAKTECGLHE  212 (212)
T ss_pred             CHHHHHHHHHHcCCCCCchhhcCCCCcCCCCCCCCCCCCCCccCccCC--CCCCcCCCCCC
Confidence            999999999999999999999999999999999999999999999984  66789999994

This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.

>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional

Probab=100.00  E-value=1.4e-56  Score=397.35  Aligned_cols=207  Identities=46%  Similarity=0.850  Sum_probs=183.3

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      |++++++|+++++|+|||||||++| ||+.+.+++++++|+|||.+||||++|+++++++||+++++++|..........
T Consensus        32 i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~l~v~~~~~~~~~~~~~  111 (241)
T PRK02090         32 LAWALENFGGRLALVSSFGAEDAVLLHLVAQVDPDIPVIFLDTGYLFPETYRFIDELTERLLLNLKVYRPDASAAEQEAR  111 (241)
T ss_pred             HHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCCEEEECCCccHHHHHHH
Confidence            5789999998899999999999877 999999999999999999999999999999999999999999998655444433


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~  159 (361)
                      ..+.+.....+.++||..+|+.||++++++.++|++|+|++||. .|+.++..+.+.          +..+++||++|++
T Consensus       112 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~itG~R~~es~-~R~~~~~~~~~~----------~~~rv~Pi~~Wt~  180 (241)
T PRK02090        112 YGGLWEQSVEDRDECCRIRKVEPLNRALAGLDAWITGLRREQSG-TRANLPVLEIDG----------GRFKINPLADWTN  180 (241)
T ss_pred             cCCCccccccCHHHHHHHHhhHHHHHHHhcCCCeEEEechhhCc-hhccCceeeecC----------CeEEEeehhhCCH
Confidence            33443322256789999999999999999888899999999996 999888776542          5789999999999


Q ss_pred             HHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCC
Q 018045          160 NDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN  220 (361)
Q Consensus       160 ~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~  220 (361)
                      +|||.|+..++||+||||++||+|+||++||.|+.+|+++|+||||  +..|+|||||..+
T Consensus       181 ~dV~~Yi~~~~lp~~pLY~~Gy~siGC~~Ct~~~~~~~~~r~gr~~--~~~~~ecg~~~~~  239 (241)
T PRK02090        181 EDVWAYLKEHDLPYHPLVDQGYPSIGCEPCTRPVEPGEDERAGRWW--GGLKKECGLHEGN  239 (241)
T ss_pred             HHHHHHHHHcCCCCChHHHcCCCCcCCCCCCCCCCCCCCccccCCC--CCCCccCCCCCCC
Confidence            9999999999999999999999999999999999999999999997  5568999999754

>KOG0189 consensus Phosphoadenosine phosphosulfate reductase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-57  Score=368.47  Aligned_cols=213  Identities=60%  Similarity=0.932  Sum_probs=202.6

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhC-CcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g-~~i~~~~p~~~~~~~~~~   79 (361)
                      |.|++.+|+..+.++|||..|-++++++.+.+.+++++|+|||.+||||+.+.+.+.++|| +.|+++.|+.-..+..++
T Consensus        38 m~~al~tf~~~~q~a~~G~~~lvlid~~~~~~~~~~l~~idT~~~~PeT~~l~d~VekkY~~i~I~~~~pd~~e~ea~~~  117 (261)
T KOG0189|consen   38 MDWALETFPNLFQTAASGLEGLVLIDMLSKTGRPFRLFFIDTLHHFPETLRLFDAVEKKYGNIRIHVYFPDAVEVEALFA  117 (261)
T ss_pred             HHHHHHHhhhHHHHHhccccchHHHHHHHHcCCCceeEEeeccccChHHHHHHHHHHHhcCceEEEEEcchhHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999999999999998 899999999988888999


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      .+|...+|.++...||+++|++|++|++++.  .+|+||.|+++| +.|..+++++.|+-+        +++++|||++|
T Consensus       118 ~K~~~~~~E~~~q~~~~l~KV~P~~RA~k~L~v~A~~TGrRksQ~-gtRselpiVqvD~~f--------ellK~NPlaN~  188 (261)
T KOG0189|consen  118 SKGGFSLWEDDHQEYDRLRKVEPARRAYKGLNVKAVFTGRRKSQG-GTRSELPIVQVDPVF--------ELLKINPLANW  188 (261)
T ss_pred             hccchhheecCchhhhhhhhccHHHHHhhccceeeEEecccccCC-CcccccceEEecCcc--------ceeeecccccc
Confidence            9999999999999999999999999999988  699999999999 699999999999765        58999999999


Q ss_pred             cHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCCccc
Q 018045          158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQE  224 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i~~~  224 (361)
                      +..|||.||..+++|||.|.++||+||||++||+|+++|+++|+|||||+  +++|||||..+++..
T Consensus       189 ~~~dV~nyi~t~nVP~NeL~~~GY~SIG~~~~TqpV~~Ge~ERaGRW~~~--~~tECGlHkg~~s~~  253 (261)
T KOG0189|consen  189 EFNDVWNYIRTNNVPYNELLAAGYRSIGDEHSTQPVLEGEDERAGRWWGE--KKTECGLHKGNQSKF  253 (261)
T ss_pred             cHHHHHHHHHhcCCcHHHHHhcCCeeccCccccCcCCCCcccccccccch--hchhccccCcchhhh
Confidence            99999999999999999999999999999999999999999999999998  779999998876653

>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase

Probab=100.00  E-value=2.7e-54  Score=368.83  Aligned_cols=189  Identities=50%  Similarity=0.979  Sum_probs=171.7

Q ss_pred             hHHHHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhchhhcc
Q 018045           19 AEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVR   98 (361)
Q Consensus        19 GKDS~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~cc~~~   98 (361)
                      ..|+|+|||+.++.++++|+|+|||++||||++|+++++++||++++++.|......+.....|.+.++...+++||..+
T Consensus         3 ~~s~Vll~L~~~~~~~~~vifvDTg~~FpET~~~~d~~~~~~~l~i~~~~~~~~~~~~~~~~~G~~~~~~~~~~~cc~~~   82 (191)
T TIGR02055         3 AEDVVLVDLAAKVRPDVKVFFLDTGRLFKETYETIDQVRERYDILIDVLSPPPLTVEEQVKEYGLNLFYRSVPHECCGIR   82 (191)
T ss_pred             hHHHHHHHHHHhcCCCCcEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCcccHHHHHHHcCcccccccchHHHHHHH
Confidence            34445669999999999999999999999999999999999999999998876556666677888776655589999999


Q ss_pred             ccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCcccc
Q 018045           99 KVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS  178 (361)
Q Consensus        99 K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~  178 (361)
                      |++|+++++++.++||+|+|++||. .|+.++.++.+..+        +.++++||++||..|||+||++++||+||||+
T Consensus        83 K~~Pl~~~l~~~~~~i~G~Rr~Es~-~R~~~~~~~~~~~~--------~~~~~~Pi~~Wt~~dVw~Yi~~~~lp~npLY~  153 (191)
T TIGR02055        83 KVEPLKRALAGVSAWITGLRRDQSP-TRAQAPFLEIDEAF--------GLVKINPLADWTSEDVWEYIADNELPYNPLHD  153 (191)
T ss_pred             hHHHHHHHHhcCCEEEEEeccccCc-hhcCCceeeecCCC--------CeEEEEecccCCHHHHHHHHHHcCCCCChHHH
Confidence            9999999999999999999999996 99999988877532        47899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccC
Q 018045          179 QGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGL  216 (361)
Q Consensus       179 ~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~  216 (361)
                      +||+|+||++||.|+.+|+++|+|||||.+..|+||||
T Consensus       154 ~Gy~siGC~~Ct~~~~~~~~~r~gRw~~~~~~~~ecg~  191 (191)
T TIGR02055       154 RGYPSIGCEPCTRPVAPGEDPRAGRWWWEEAAKKECGL  191 (191)
T ss_pred             cCCCCCCCcCCCCCCCCCCCccCcCcCCCCCCCCCCCC
Confidence            99999999999999999999999999999888999997

This model describes recently identified adenosine 5'-phosphosulfate (APS) reductase activity found in sulfate-assimilatory prokaryotes, thus separating it from the traditionally described phosphoadenosine 5'-phosphosulfate (PAPS) reductases found in bacteria and fungi. Homologous to PAPS reductase in enterobacteria, cyanobacteria, and yeast, APS reductase here clusters with, and demonstrates greater homology to plant APS reductase. Additionally, the presence of two conserved C-terminal motifs (CCXXRKXXPL & SXGCXXCT) distinguishes APS substrate specificity and serves as a FeS cluster.

>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=2.7e-53  Score=378.74  Aligned_cols=212  Identities=40%  Similarity=0.722  Sum_probs=186.8

Q ss_pred             HHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            2 DRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         2 ~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      +|+++++++.++++|||||||+|+ ||+.+...+++++|+|||++||||++|+++++++||++++++.|+....+.  ..
T Consensus        32 ~~~~~~~~~~~~~~~S~Gkds~V~l~L~~k~~~~~~vif~DTg~~f~Et~~~~d~~~~~~~~~l~~~~~~~~~~~~--~~  109 (261)
T COG0175          32 RWAAEEFSNPVVVSFSGGKDSTVLLHLAAKAFPDFPVIFLDTGYHFPETYEFRDRLAEEYGLDLKVYRPDDEVAEG--EK  109 (261)
T ss_pred             HHHHHHcCCCeEEEecCchhHHHHHHHHHHhcCCCcEEEEeCCCcCHHHHHHHHHHHHHcCCeEEEecCccchhhh--hh
Confidence            568889987889999999999877 999999989999999999999999999999999999999999998765444  33


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCc
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVK  158 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~  158 (361)
                      ++...+..+..+|||.++|++||+++++++  ++|++|+|++||. .|+++++++.+..+       ++.++++||++||
T Consensus       110 ~~~~~~~~~~~r~c~~i~K~~pl~~al~~~~~~a~~~G~Rrdes~-~Rak~~~~~~~~~~-------~~~~rv~Pl~~Wt  181 (261)
T COG0175         110 YGGKLWEPSVERWCCDIRKVEPLKRALDEYGFDAWFTGLRRDESP-TRAKLPVVSFDSEF-------GESIRVNPLADWT  181 (261)
T ss_pred             cccCCCCCCcchhhhhhHhhhhHHHHHhhcCCceEEEeccccccc-ccccCceeccccCc-------CCeEEEcchhcCC
Confidence            333333323456899999999999999987  7999999999996 99999999988643       3689999999999


Q ss_pred             HHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCcCCCCCCCCCCcccccCCCCCCcc
Q 018045          159 GNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP-GQHEREGRWWWEDAKAKECGLHKGNIKQ  223 (361)
Q Consensus       159 ~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~-~~~~~~gr~~~~~~~~~~~g~~~~~i~~  223 (361)
                      ..|||.||..++|||||||++||+|+||++||.++.+ ++++|+||||+....++|||+|......
T Consensus       182 ~~dVw~Yi~~~~lp~npLy~~Gy~siGC~~Ct~~~~~~~~~~r~~rw~~~~~~~~E~g~~~~~~~~  247 (261)
T COG0175         182 ELDVWLYILANNLPYNPLYDQGYRSIGCWPCTRPVEPLAEDERAGRWEGELAEKTECGLHRADDPD  247 (261)
T ss_pred             HHHHHHHHHHhCCCCCcHHhccCCccCcccCCCcCccccccHHHHhhccccchhhhhccccccccc
Confidence            9999999999999999999999999999999999998 8999999999887779999999765433

>PRK12563 sulfate adenylyltransferase subunit 2; Provisional

Probab=100.00  E-value=2.3e-44  Score=322.60  Aligned_cols=170  Identities=21%  Similarity=0.355  Sum_probs=142.0

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ   75 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~   75 (361)
                      |++++++|+ +++++|||||||+|| ||+.++    .++++++|+|||++||||++|+++++++||++++++.|... + 
T Consensus        30 lrea~~~f~-~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~Liv~~~~~~-~-  106 (312)
T PRK12563         30 LREVVAECS-KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLDLVVHHNPDG-I-  106 (312)
T ss_pred             HHHHHHhcC-CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEecChHH-H-
Confidence            578888884 789999999999877 999986    67899999999999999999999999999999999887532 1 


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCCCc-------
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFE-------  139 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~~~-------  139 (361)
                          ..|... +..+...||..+|++||++++.  ++++||+|+|++|+. .|++..+++       ||+++.       
T Consensus       107 ----~~G~~~-~~~~~~~~c~~~Kv~pL~raL~~~g~da~itG~RRdE~~-sRak~~ifs~r~~~~~wD~~~qrPelw~~  180 (312)
T PRK12563        107 ----ARGIVP-FRHGSALHTDVAKTQGLKQALDHHGFDAAIGGARRDEEK-SRAKERIFSFRSAFHRWDPKAQRPELWSL  180 (312)
T ss_pred             ----HhCCCc-ccCCHHHHhhHHhHHHHHHHHHhcCCCEEEEecCHHHhh-hhccCceecccccccccCccccChhhhhh
Confidence                124332 3456789999999999999997  678999999999996 999998887       554321       


Q ss_pred             --CCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccCC
Q 018045          140 --GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG  180 (361)
Q Consensus       140 --~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g  180 (361)
                        .+ ...+..++++||++||+.|||.||..++|||||||+.+
T Consensus       181 ~n~~-~~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~  222 (312)
T PRK12563        181 YNAR-LRRGESLRVFPLSNWTELDVWQYIAREKIPLVPLYFAK  222 (312)
T ss_pred             cccc-ccCCceEEEecchhCCHHHHHHHHHHcCCCCCcchhcC
Confidence              11 01235899999999999999999999999999999875

>TIGR02039 CysD sulfate adenylyltransferase, small subunit

Probab=100.00  E-value=3e-43  Score=314.80  Aligned_cols=186  Identities=24%  Similarity=0.409  Sum_probs=154.8

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ   75 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~   75 (361)
                      |++++++|+ +++++|||||||+|| ||+.++    +++++++|+|||++||||++|+++++++||+++++++++..   
T Consensus        12 lRe~~~~f~-~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~l~v~~~~~~---   87 (294)
T TIGR02039        12 IREVAAEFE-RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLRLIVHSNEEG---   87 (294)
T ss_pred             HHHHHHhcC-CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEEechhh---
Confidence            578889995 678999999999877 999986    56799999999999999999999999999999999988632   


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCCCc-------
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFE-------  139 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~~~-------  139 (361)
                         ...|...+ ..+...||..+|+.||++++.  ++++|++|+|+||+. .|++..+++       ||++..       
T Consensus        88 ---~~~g~~~~-~~~~~~~c~vlK~~pL~~al~e~g~da~itG~RRDEe~-sRake~i~s~r~~~~~wD~~~q~Pelw~~  162 (294)
T TIGR02039        88 ---IADGINPF-TEGSALHTDIMKTEALRQALDKNQFDAAFGGARRDEEK-SRAKERIFSFRNAFHQWDPKKQRPELWNL  162 (294)
T ss_pred             ---hhcCcccc-ccChHHHhhHHHHHHHHHHHHHcCCCEEEecCChhhhh-HhhcCceeeccccccccCccccCchhhhc
Confidence               23454433 345677999999999999997  678999999999995 999877764       443311       


Q ss_pred             --CCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccC---------------------------------CCCCC
Q 018045          140 --GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ---------------------------------GYISI  184 (361)
Q Consensus       140 --~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~---------------------------------g~~~~  184 (361)
                        ++. ..+..++++||++||+.|||.||..++|||||||..                                 +|+++
T Consensus       163 ~~~~~-~~g~~~RV~PL~~WTe~DVW~YI~~~~IP~~pLY~~~~r~~~~r~g~~~~~~~~~~~~~~~~~~~~~~~r~rt~  241 (294)
T TIGR02039       163 YNGRI-SKGESVRVFPLSNWTELDIWRYIAAENIPIVPLYFAAKRPVVQRDGMLIMVDDVRMPLAPGEVVKERMVRFRTL  241 (294)
T ss_pred             ccccc-ccCCcEEEechhhCCHHHHHHHHHHcCCCCCcCeecCccceeeccCeEEecCccccCCCCCCcccccceeeccc
Confidence              111 123578999999999999999999999999999953                                 89999


Q ss_pred             CCCCCCCCCCCC
Q 018045          185 GCEPCTRPVLPG  196 (361)
Q Consensus       185 GC~~Ct~~~~~~  196 (361)
                      ||++||.++.+.
T Consensus       242 g~~~~t~~~~s~  253 (294)
T TIGR02039       242 GCYPLTGAIESD  253 (294)
T ss_pred             CcccCCCcccCC
Confidence            999999999865

In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.

>PRK08557 hypothetical protein; Provisional

Probab=100.00  E-value=3.1e-42  Score=323.36  Aligned_cols=181  Identities=24%  Similarity=0.381  Sum_probs=154.6

Q ss_pred             CHHHHhHhC---CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH
Q 018045            1 MDRALEKFG---NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA   76 (361)
Q Consensus         1 i~~~~~~~~---~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~   76 (361)
                      |++++++|+   ..+++||||||||+++ +|+.+..++++++|+|||.+||||++|+++++++||++++++.+.  .+..
T Consensus       170 i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~~--~f~~  247 (417)
T PRK08557        170 LKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDGD--NFWE  247 (417)
T ss_pred             HHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEech--HHHH
Confidence            467778885   3588999999999877 888888889999999999999999999999999999999998765  3444


Q ss_pred             HHHhcCCCCCCccchhchhhccccHHHHHHHcc---C--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEE
Q 018045           77 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG---L--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW  151 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~---~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  151 (361)
                      .+...|.|   ..+.+|||..+|+.|+++++++   .  .++++|+|++||. .|++++..+.+..       .++.+++
T Consensus       248 ~~~~~G~P---s~~~RwCc~~lKi~Pl~r~lk~~~~~~~~l~i~G~Rr~ES~-~Ra~~~~~~~~~~-------~~~~~~i  316 (417)
T PRK08557        248 NLEKEGIP---TKDNRWCNSACKLMPLKEYLKKKYGNKKVLTIDGSRKYESF-TRANLDYERKSGF-------IDFQTNV  316 (417)
T ss_pred             HHhhccCC---cccchhhhHHHhHHHHHHHHHhhcCcCceEEEEeeecccch-hhccCceeccccc-------ccCceeE
Confidence            45566654   4578999999999999999975   2  4899999999996 9999876544321       1346789


Q ss_pred             eeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCC
Q 018045          152 NPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL  194 (361)
Q Consensus       152 ~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~  194 (361)
                      +||++||..|||.||..+++|+||||++||+|+||++||.+..
T Consensus       317 ~PI~~Wt~~dVW~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~~  359 (417)
T PRK08557        317 FPILDWNSLDIWSYIYLNDILYNPLYDKGFERIGCYLCPSALN  359 (417)
T ss_pred             EecccCCHHHHHHHHHHcCCCCCchhhCCCCCCCccCCCCccH
Confidence            9999999999999999999999999999999999999998764

>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase

Probab=100.00  E-value=8.9e-43  Score=295.77  Aligned_cols=170  Identities=37%  Similarity=0.716  Sum_probs=127.6

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED   89 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~   89 (361)
                      +++|+|||||||++| ||+.+...+++++|+|||.+||+|++|+++++++||++++++.+.......... .+.   +..
T Consensus         1 ~i~vs~SGGKDS~v~l~l~~~~~~~~~vv~~dtg~e~p~t~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~---~~~   76 (174)
T PF01507_consen    1 NIVVSFSGGKDSTVMLHLAREAGRKVPVVFIDTGYEFPETYEFVDELAKRYGIPIIVYRPPETFEQRFIL-YGW---PSK   76 (174)
T ss_dssp             SEEEE--SSHHHHHHHHHHHHHHTTCEEEEEE-STB-HHHHHHHHHHHHHTTCEEEEEETTSHHHHHHHH-HHH---STT
T ss_pred             CeEEEecCCHHHHHHHHHHHHhcCCCcEEEEecCccCHHHHHHHHHHHhhhhhhhhhcccccchhhcccc-ccc---cch
Confidence            589999999999877 999998888999999999999999999999999999999998888664433332 221   111


Q ss_pred             chh-chhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHHH
Q 018045           90 GHQ-ECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL  166 (361)
Q Consensus        90 ~~~-~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi  166 (361)
                      ..+ +||..+|+.|+++++++.  .++++|+|++||. +|++....+.+..+       ++.++++||++|+++|||+||
T Consensus        77 ~~~~~c~~~~K~~p~~~~~~~~~~~~~~~G~R~~Es~-~R~~~~~~~~~~~~-------~~~~~~~Pi~~wt~~dV~~yi  148 (174)
T PF01507_consen   77 LWRWWCCSILKVKPLRRALKEYGKDVWIIGVRADESP-RRAKLPMFEFDEDN-------PKIIRVYPIADWTEEDVWDYI  148 (174)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHTTESEEE----TTSTT-GCCGSSSEEEETTT-------TSEEEE-TTTT--HHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhhhcchHHHHHHHHHHhhchh-hhhhchhhhccccc-------CCEEEEEehhhCCHHHHHHHH
Confidence            222 699999999999999866  4999999999996 99988887776543       347899999999999999999


Q ss_pred             HhCCCCCCccccCCCCCCCCCCCCCC
Q 018045          167 RTMDVPINSLHSQGYISIGCEPCTRP  192 (361)
Q Consensus       167 ~~~~lp~~~lY~~g~~~~GC~~Ct~~  192 (361)
                      +.++||+||||++||.|+||++||.|
T Consensus       149 ~~~~l~~~~lY~~g~~r~GC~~C~~~  174 (174)
T PF01507_consen  149 KANGLPYNPLYDKGYSRVGCWPCTRP  174 (174)
T ss_dssp             HHHT--B-HHHHCT-SS--BTTTB--
T ss_pred             HHhcCCCcHHHHCcCCCcCCccCCCC
Confidence            99999999999999999999999975

PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional

Probab=100.00  E-value=7.5e-42  Score=308.80  Aligned_cols=186  Identities=25%  Similarity=0.478  Sum_probs=153.7

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ   75 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~   75 (361)
                      |++++++| ++++|+|||||||++| ||+.+.    +.+++++|+|||.+||||++|+++++++||++++++.+...   
T Consensus        20 Lrea~~~f-~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~l~v~~~~~~---   95 (301)
T PRK05253         20 LREVAAEF-ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLELIVHSNPEG---   95 (301)
T ss_pred             HHHHHHhC-CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCCEEEEeChHH---
Confidence            57888988 5999999999999877 999885    45789999999999999999999999999999999876521   


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCC---------
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPV---------  137 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~---------  137 (361)
                         ...|... +..+.++||..+|+.||+++++  ++++|++|+|+||+. .|++..+++       |+++         
T Consensus        96 ---i~~g~~~-~~~~~~~cC~~lK~~pL~~al~e~g~da~~~G~RrDE~~-~Ra~e~~fs~r~~~~~wd~~~q~Pelw~~  170 (301)
T PRK05253         96 ---IARGINP-FRHGSAKHTNAMKTEGLKQALEKYGFDAAFGGARRDEEK-SRAKERIFSFRDEFGQWDPKNQRPELWNL  170 (301)
T ss_pred             ---HhcCCCC-CCCChHHHHHHHHHHHHHHHHHHcCCCEEEeccccchhh-hhccCccccccccccccCccccChhhhhh
Confidence               1234433 3345689999999999999997  568999999999995 999877664       3332         


Q ss_pred             CcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCcccc---------CC-----------------------CCCCC
Q 018045          138 FEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS---------QG-----------------------YISIG  185 (361)
Q Consensus       138 ~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~---------~g-----------------------~~~~G  185 (361)
                      |+++. ..+..++++||++|++.|||+||..++|||||||.         .|                       |+++|
T Consensus       171 ~~~~~-~~g~~~rV~PL~~Wte~DIw~Yi~~~~IP~~pLY~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~r~~g  249 (301)
T PRK05253        171 YNGRI-NKGEHIRVFPLSNWTELDIWQYIERENIPIVPLYFAHERPVVERDGMLIMVDDRMPLRPGEVVEERMVRFRTLG  249 (301)
T ss_pred             ccccc-cCCCeEEEeehhhCCHHHHHHHHHHcCCCCCcccccCCCceEeECCeEEecccccCCCCCCcceeeeeeeeccC
Confidence            11111 12358999999999999999999999999999998         44                       99999


Q ss_pred             CCCCCCCCCCC
Q 018045          186 CEPCTRPVLPG  196 (361)
Q Consensus       186 C~~Ct~~~~~~  196 (361)
                      |++||.++.+.
T Consensus       250 ~~~~t~~~~s~  260 (301)
T PRK05253        250 CYPCTGAVESE  260 (301)
T ss_pred             CccCCCcccCC
Confidence            99999998765

>PRK13794 hypothetical protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=326.53  Aligned_cols=180  Identities=28%  Similarity=0.403  Sum_probs=156.5

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV   78 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~   78 (361)
                      |+++++.++++++|||||||||+++ +|+.+. +.++.++|+|||.+||||++|+++++++||++++++.++  .++...
T Consensus       239 i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i~~~~~~--~f~~~~  316 (479)
T PRK13794        239 IRNTAEKINKPVTVAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLEIIRTKSE--EFWEKL  316 (479)
T ss_pred             HHHHHHhcCCCEEEEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCcEEEEchH--HHHHHH
Confidence            4667777888999999999999876 888887 788999999999999999999999999999999998876  344445


Q ss_pred             HhcCCCCCCccchhchhhccccHHHHHHHcc----CCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045           79 RSKGLFSFYEDGHQECCRVRKVRPLRRALKG----LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV  154 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~----~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi  154 (361)
                      ...|.   |..+.+|||..+|+.|+++++++    ..++++|+|++||. .|+..+..+.+...       ++.++++||
T Consensus       317 ~~~G~---P~~~~rwCc~~~K~~Pl~~~l~~~~~~~~~~~~G~R~~ES~-~Ra~~~~~~~~~~~-------~~~~~~~PI  385 (479)
T PRK13794        317 EEYGP---PARDNRWCSEVCKLEPLGKLIDEKYEGECLSFVGQRKYESF-NRSKKPRIWRNPYI-------KKQILAAPI  385 (479)
T ss_pred             HhcCC---CCCcchhhhhHHHHHHHHHHHHhcCCCccEEEEEEEcCccH-hHhcCcccccccCc-------CCcEEEech
Confidence            55655   44578999999999999999975    35899999999996 99999877655322       467899999


Q ss_pred             ccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045          155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV  193 (361)
Q Consensus       155 ~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~  193 (361)
                      ++||..|||.||..++|||||||++||.|+||++||...
T Consensus       386 ~~Wt~~dVw~Yi~~~~lp~npLY~~G~~riGC~~Cp~~~  424 (479)
T PRK13794        386 LHWTAMHVWIYLFREKAPYNKLYEQGFDRIGCFMCPAME  424 (479)
T ss_pred             HhCCHHHHHHHHHHcCCCCChHHHCCCCCCccccCcCcC
Confidence            999999999999999999999999999999999999764

>PRK13795 hypothetical protein; Provisional

Probab=100.00  E-value=1e-38  Score=317.52  Aligned_cols=181  Identities=27%  Similarity=0.422  Sum_probs=156.1

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      |++++++++++++|||||||||+++ ||+.+...++.++|+|||.+||||++|+++++++||++++++.+... +.....
T Consensus       235 Ir~~~~~~~~~v~Va~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~i~~~~~~~~-f~~~~~  313 (636)
T PRK13795        235 IRGVAEKYNLPVSVSFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIELIEADAGDA-FWRAVE  313 (636)
T ss_pred             HHHHHHHcCCCEEEEecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEcccHh-HHHhhh
Confidence            4667777777899999999999877 99999888899999999999999999999999999999999988633 333344


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHccC----CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGL----RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~----~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      ..|   +|..+.+|||..+|+.|++++++..    .++++|+|++||. .|++.+..+.+..       .++.++++||+
T Consensus       314 ~~g---~P~~~~rwCc~~~K~~Pl~r~l~~~~~~~~~~i~G~Rr~ES~-~R~~~~~~~~~~~-------~~~~~~~~PI~  382 (636)
T PRK13795        314 KFG---PPARDYRWCCKVCKLGPITRAIKENFPKGCLTFVGQRKYESF-SRAKSPRVWRNPW-------VPNQIGASPIQ  382 (636)
T ss_pred             ccC---CCccccccchhhHhHHHHHHHHHhhCCCceEEEEEEEccchH-HHhhCcccccCCC-------CCCcEEEechH
Confidence            444   3456789999999999999999854    3789999999996 9999887665432       24678999999


Q ss_pred             cCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045          156 NVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV  193 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~  193 (361)
                      +||..|||.||..++|||||||++||.|+||++||.+.
T Consensus       383 ~Wt~~dVw~YI~~~~lp~npLY~~Gy~riGC~~Cp~~~  420 (636)
T PRK13795        383 DWTALEVWLYIFWRKLPYNPLYERGFDRIGCWLCPSSS  420 (636)
T ss_pred             hCCHHHHHHHHHHhCCCCChHHHCCCCCCCccCCCCCC
Confidence            99999999999999999999999999999999999865

>PRK08576 hypothetical protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=277.58  Aligned_cols=176  Identities=21%  Similarity=0.310  Sum_probs=142.3

Q ss_pred             HHhHhC-CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045            4 ALEKFG-NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus         4 ~~~~~~-~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      ++++++ .+++|+|||||||+++ +|+.+...++.++|+|||.++|+|+++++++++++|+++++...+   ......+.
T Consensus       228 ~Lr~~~~~rVvVafSGGKDStvLL~La~k~~~~V~aV~iDTG~e~pet~e~~~~lae~LGI~lii~~v~---~~~~~~~~  304 (438)
T PRK08576        228 FLRKFEEWTVIVPWSGGKDSTAALLLAKKAFGDVTAVYVDTGYEMPLTDEYVEKVAEKLGVDLIRAGVD---VPMPIEKY  304 (438)
T ss_pred             HHHHcCCCCEEEEEcChHHHHHHHHHHHHhCCCCEEEEeCCCCCChHHHHHHHHHHHHcCCCEEEcccC---HHHHhhhc
Confidence            456665 4899999999999876 888887667999999999999999999999999999999772211   22223344


Q ss_pred             CCCCCCccchhchhhccccHHHHHHHcc--CCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG  159 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~~--~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~  159 (361)
                      +.+.    ....||..+|+.|+++++++  .+++++|+|++||. .|...+....+..      +.++..+++||++|++
T Consensus       305 g~p~----~~~rcCt~lK~~pL~raake~g~~~iatG~R~dES~-~R~~~p~v~~~~~------~~~~v~rI~PL~~Wte  373 (438)
T PRK08576        305 GMPT----HSNRWCTKLKVEALEEAIRELEDGLLVVGDRDGESA-RRRLRPPVVERKT------NFGKILVVMPIKFWSG  373 (438)
T ss_pred             CCCC----cccchhhHHHHHHHHHHHHhCCCCEEEEEeeHHHhH-HhhcCCccccccc------CCCCeEEEeChhhCCH
Confidence            4322    23457778999999999985  46899999999995 8887765543321      1246889999999999


Q ss_pred             HHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045          160 NDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV  193 (361)
Q Consensus       160 ~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~  193 (361)
                      .|||.|+..++||+||||++||.|+||++||...
T Consensus       374 ~DV~~YI~~~gLP~npLY~~Gy~rIGC~~Cp~~~  407 (438)
T PRK08576        374 AMVQLYILMNGLELNPLYYKGFYRLGCYICPSLR  407 (438)
T ss_pred             HHHHHHHHHhCCCCCcHHhCCCCccCCcCCcchH
Confidence            9999999999999999999999999999999754

>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase

Probab=100.00  E-value=2.3e-34  Score=243.45  Aligned_cols=167  Identities=39%  Similarity=0.680  Sum_probs=137.8

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCC---CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~---~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      +++|+|||||||++| ||+.+...   ++.++|+|||.++|+|+++++++++.+|++++++.+................+
T Consensus         1 ~i~v~~SGGkDS~~ll~l~~~~~~~~~~~~~v~~dtg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   80 (173)
T cd01713           1 NVVVSFSGGKDSTVLLHLALKALPELKPVPVIFLDTGYEFPETYEFVDRVAERYGLPLVVVRPPDSPAEGLALGLKGFPL   80 (173)
T ss_pred             CeEEEecCChHHHHHHHHHHHhcccccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCeEEECCCccHHHHHHHhhhccCC
Confidence            589999999999877 89888766   89999999999999999999999999999999988775432211111112234


Q ss_pred             CccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045           87 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN  164 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~  164 (361)
                      +....++||..+|..|+.++++  +.+++++|+|+||+. .|..+.......       ..++..+++||++|+.+|||+
T Consensus        81 ~~~~~~~c~~~~K~~~~~~~~~~~~~~~~~~G~r~de~~-~r~~~~~~~~~~-------~~~~~~~~~Pl~~w~~~di~~  152 (173)
T cd01713          81 PSPDRRWCCRILKVEPLRRALKELGVVAWITGIRRDESA-RRALLPVVWTDD-------GKGGILKVNPLLDWTYEDVWA  152 (173)
T ss_pred             ccccHHHhhccccchHHHHHHHhcCCeEEEEEeccccch-hhhhCccccccC-------CCCCcEEEcchhcCCHHHHHH
Confidence            5567899999999999999998  567999999999995 888766541111       124678999999999999999


Q ss_pred             HHHhCCCCCCccccCCCCCCC
Q 018045          165 FLRTMDVPINSLHSQGYISIG  185 (361)
Q Consensus       165 yi~~~~lp~~~lY~~g~~~~G  185 (361)
                      |++.++||+||||++||+|+|
T Consensus       153 ~~~~~~l~~~~ly~~g~~~~g  173 (173)
T cd01713         153 YLARHGLPYNPLYDQGYRSIG  173 (173)
T ss_pred             HHHHcCCCCCHHHHcCCCCCC
Confidence            999999999999999999987

PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti

>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC

Probab=99.98  E-value=2.6e-32  Score=257.09  Aligned_cols=189  Identities=17%  Similarity=0.248  Sum_probs=137.7

Q ss_pred             HHHHhHhCCcEEEEecchHHHHHH-HHHHHc---------CCCceEEEccCCCCcHHHHHHHHHHH-------HHhCCcE
Q 018045            2 DRALEKFGNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFGIRI   64 (361)
Q Consensus         2 ~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~---------~~~i~v~~~dtg~~~pet~~~v~~~~-------~~~g~~i   64 (361)
                      ++++...+.+++|+|||||||+++ +|+.++         .+.+.|+|.|||.|||+|++|++++.       +++|+++
T Consensus         6 ~~~y~~~~~p~vV~fSGGKDSta~L~Lv~~Al~~lp~e~~~k~v~VI~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~~lpi   85 (447)
T TIGR03183         6 QELYLSDDIPWVVGYSGGKDSTAVLQLIWNALAALPAEQRTKKIHVISTDTLVENPIVAAWVNASLERMQEAAQDQGLPI   85 (447)
T ss_pred             HHHHHhcCCceEEEeCCCHHHHHHHHHHHHHHHhccccccCcceEEEECcCCCccHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence            344544445689999999999876 776653         14688999999999999999997643       5667666


Q ss_pred             E--EEcCCh-HHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHcc------CCEEEEeeeccCCccCccCCCc-eec
Q 018045           65 E--YMFPDA-VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG------LRAWITGQRKDQSPGTRSEIPV-VQV  134 (361)
Q Consensus        65 ~--~~~p~~-~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~------~~~~i~G~R~~Es~~~R~~~~~-~~~  134 (361)
                      .  ++.|.. ..++..+.++|.|. |....+|||..+|+.|+++++++      ..++++|+|++||. .|++... .+.
T Consensus        86 ~~~~v~P~~~~~Fwv~liGrG~P~-P~~~~RWCT~~LKI~P~~r~i~~~~~~~g~~v~vlGvR~~ES~-~RA~~m~k~e~  163 (447)
T TIGR03183        86 EPHRLTPEIKDTFWVNLIGKGYPA-PRQKFRWCTDRLKISPSNTFIRDVVAANGEVILVLGTRKAESQ-ARAAVMEKHES  163 (447)
T ss_pred             EEEecCCCcchHHHHHHhcCCCCC-CCCCCCccChHHHhhHHHHHHHHHHhccCCeEEEEEeehhhHH-HHHhhhhhhcc
Confidence            4  566763 33444445566543 45678999999999999999874      25899999999996 8988521 111


Q ss_pred             CC--CCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCC-------cccc------------------CCCCCCCCC
Q 018045          135 DP--VFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPIN-------SLHS------------------QGYISIGCE  187 (361)
Q Consensus       135 ~~--~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~-------~lY~------------------~g~~~~GC~  187 (361)
                      ..  ....+....++.+.++||.+|+.+|||.||..+++|+.       .||.                  +|..|.|||
T Consensus       164 ~~~r~~l~~~~~~~~~~v~~PI~dWs~~DVW~yL~~~~~P~g~~~~~l~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCw  243 (447)
T TIGR03183       164 GSLRDRLSRNSSLPNSWVYSPIEDWSNDDVWMYLLQVPNPWGIDNKDLFGMYQGATADGECPLVVDTSTPSCGDSRFGCW  243 (447)
T ss_pred             ccccccccccCCCCCcEEEEChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhcccCCCCceeeCCCCCCCCCCCCCee
Confidence            10  00112223457889999999999999999999988773       3453                  388999999


Q ss_pred             CCCCC
Q 018045          188 PCTRP  192 (361)
Q Consensus       188 ~Ct~~  192 (361)
                      .||..
T Consensus       244 ~Ct~v  248 (447)
T TIGR03183       244 VCTMV  248 (447)
T ss_pred             eCcCc
Confidence            99964

Members of this protein family are the DndC protein from the dnd (degradation during electrophoresis) operon. The dnd phenotype reflects a sulfur-containing modification to DNA. This operon is sparsely and sporadically distributed among bactera; among the first eight examples are members from the Actinobacteria, Firmicutes, Gammaproteobacteria, Cyanobacteria. DndC is suggested to be a sulfurtransferase.

>PRK06850 hypothetical protein; Provisional

Probab=99.97  E-value=8.9e-32  Score=255.89  Aligned_cols=183  Identities=20%  Similarity=0.305  Sum_probs=136.7

Q ss_pred             CCcEEEEecchHHHHHH-HHHHHc---------CCCceEEEccCCCCcHHHHHHHHHHH-------HHhCCcEE--EEcC
Q 018045            9 GNDIAIAFSGAEDVALI-EYAHLT---------GRPFRVFSLDTGRLNPETYRFFDEVE-------KHFGIRIE--YMFP   69 (361)
Q Consensus         9 ~~~i~vs~SGGKDS~~l-~l~~~~---------~~~i~v~~~dtg~~~pet~~~v~~~~-------~~~g~~i~--~~~p   69 (361)
                      +..++|+|||||||+++ +|+.+.         .+++.|+|.|||.|+|+|++|++++.       +++|+++.  ++.|
T Consensus        34 ~~P~vV~fSGGKDStavL~Lv~~Al~~lp~e~r~k~v~Vi~~DTgvE~Pe~~~~v~~~l~~i~~~a~~~glpi~~~~v~P  113 (507)
T PRK06850         34 NRPWVIGYSGGKDSTAVLQLVWNALAGLPPEKRTKPVYVISSDTLVENPVVVDWVNKSLERINEAAKKQGLPITPHKLTP  113 (507)
T ss_pred             CCCeEEeCCCCchHHHHHHHHHHHHHhcchhccCCcEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHcCCceEEEeeCC
Confidence            34689999999999866 776552         12578999999999999999987764       46688774  4667


Q ss_pred             Ch-HHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHcc------CCEEEEeeeccCCccCccCC-CceecCCCCcCC
Q 018045           70 DA-VEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG------LRAWITGQRKDQSPGTRSEI-PVVQVDPVFEGL  141 (361)
Q Consensus        70 ~~-~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~------~~~~i~G~R~~Es~~~R~~~-~~~~~~~~~~~~  141 (361)
                      .. ..++..+.++|.|. |....+|||..+|+.|+++++++      ..++++|+|++||. .|++. ...+.+.....+
T Consensus       114 ~~~~sFwv~liGrG~P~-Ps~~~RWCT~~LKI~P~~r~I~~~~~~~ge~v~vlGvR~~ES~-~RA~~m~~~~~~~~rl~~  191 (507)
T PRK06850        114 KINDTFWVNLIGKGYPA-PRRKFRWCTERLKIDPSNDFIKDKVSEFGEVIVVLGVRKAESA-ARAQVMAKHEIEGSRLSR  191 (507)
T ss_pred             CcchhHHHHHhcCCCCC-CCCCCccCCcHHHHhHHHHHHHHHHhhcCcEEEEEEeeccccH-HHHhhhhhhcccCcceee
Confidence            64 33444455666653 55688999999999999999963      24899999999996 88875 333332111122


Q ss_pred             cCCCCCeEEEeeCccCcHHHHHHHHHhCCCCC-------Ccccc------------------CCCCCCCCCCCCCCC
Q 018045          142 EGGVGSLVKWNPVANVKGNDIWNFLRTMDVPI-------NSLHS------------------QGYISIGCEPCTRPV  193 (361)
Q Consensus       142 ~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~-------~~lY~------------------~g~~~~GC~~Ct~~~  193 (361)
                      +...++.+.++||.+|+.+|||.||..+++|+       ..||.                  +|-.|.|||.||...
T Consensus       192 ~~~~~~~~v~~PI~dWs~dDVW~YL~~~~~P~g~~~~~L~~lY~~a~~~~eCp~v~d~~~~sCG~sRfGCwvCt~v~  268 (507)
T PRK06850        192 HTTLPNAFVYTPIEDWSNDDVWKYLLQWENPWGGSNRDLFTLYRGASADGECPLVVDTSTPSCGNSRFGCWVCTVVT  268 (507)
T ss_pred             ccCCCCcEEEeChHhCCHHHHHHHHHhcCCCCCCCHHHHHHHHhhccCCCCCCeeeCCCCCCCCCCCCCcccccccc
Confidence            22335778999999999999999999998887       45564                  366899999999643

>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]

Probab=99.90  E-value=2.5e-24  Score=189.41  Aligned_cols=201  Identities=19%  Similarity=0.244  Sum_probs=125.8

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHH----cCC-CceEEEccCCCCcHHHHHHHHHHHHHh-CC-c--EEEEcCC
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHL----TGR-PFRVFSLDTGRLNPETYRFFDEVEKHF-GI-R--IEYMFPD   70 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~----~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~-g~-~--i~~~~p~   70 (361)
                      |++++++| ++|+|||||||||.|| ||+.+    .++ +|.|+|+|-+..|.+|.+||+++.+.+ ++ +  ..+.-|-
T Consensus        20 l~~if~~f-~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E~QYs~TidyV~em~~~~~dv~~~~yWvcLPl   98 (407)
T COG3969          20 LEWIFNTF-PRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWEAQYSCTIDYVQEMRESYHDVIETFYWVCLPL   98 (407)
T ss_pred             HHHHHhcC-CeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcchhhhhhHHHHHHHHHhcccCccccceEEEeeh
Confidence            57888999 5999999999999766 77655    455 699999999999999999999999975 32 1  1111121


Q ss_pred             h-----HHHHHHH--HhcC-----CCCCCc----cchhchh-hcccc------HHHHHHHcc---CCEEEEeeeccCCcc
Q 018045           71 A-----VEVQALV--RSKG-----LFSFYE----DGHQECC-RVRKV------RPLRRALKG---LRAWITGQRKDQSPG  124 (361)
Q Consensus        71 ~-----~~~~~~~--~~~~-----~~~~~~----~~~~~cc-~~~K~------~pl~~~~~~---~~~~i~G~R~~Es~~  124 (361)
                      .     +..+..+  -+.|     ...+|.    .++...+ ...++      .-+.+.+.+   ..++++|+|+|||. 
T Consensus        99 ~t~na~S~~qp~W~~Wep~~e~~WVR~~P~~~ii~d~~~F~Fyr~~M~feeFv~~F~~Wl~~~~~~ta~LvGiRadESl-  177 (407)
T COG3969          99 TTQNALSQYQPEWICWEPGTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVPAFAAWLSQKRPATAVLVGIRADESL-  177 (407)
T ss_pred             hcccchhhcCceeecCCCCCccccccCCchhccccCCCcccceeccccHHHHHHHHHHHHhccCCceEEEEeecchhhH-
Confidence            0     0000000  0000     000111    1222222 22222      112222222   25899999999997 


Q ss_pred             CccCCCce----ec--CCCCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCC--C
Q 018045          125 TRSEIPVV----QV--DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP--G  196 (361)
Q Consensus       125 ~R~~~~~~----~~--~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~--~  196 (361)
                      +|...-..    ..  +..+..+....+.++.++||+||..+|||.+..+++.+||||||+.|+- |-.+--+.++.  |
T Consensus       178 NRf~ai~~~~k~~~~~~~pWtt~~~~~~~~~~~yPiYDW~~eDiW~~~Ak~~~~yN~LYDlmYqA-Gvp~~~MRVc~Pfg  256 (407)
T COG3969         178 NRFNAIARKEKLRFADDKPWTTRIFPNGHVWTFYPIYDWKVEDIWTANAKFSYAYNPLYDLMYQA-GVPLRQMRVCEPFG  256 (407)
T ss_pred             HHHHHHHHhhhcccCCCCCceeeecCCCceEEEEecccchHHHHHHHHHhcCCcccHHHHHHHHc-CCChhhccccCCCC
Confidence            88542211    11  1224444444566899999999999999999999999999999998875 64444333332  4


Q ss_pred             CCCcCCCC
Q 018045          197 QHEREGRW  204 (361)
Q Consensus       197 ~~~~~gr~  204 (361)
                      ...|.|.|
T Consensus       257 d~qr~gL~  264 (407)
T COG3969         257 DEQRKGLW  264 (407)
T ss_pred             hhhhcccc
Confidence            56677765

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.90  E-value=5.8e-23  Score=159.80  Aligned_cols=107  Identities=21%  Similarity=0.323  Sum_probs=95.4

Q ss_pred             CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..+.|.+|++++|++++...+.+++++|.||||||++|+.+.|.++++++.+++ .+.|++|||+.+ .++|.++|+|.+
T Consensus         7 ~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~-~v~~~~Vd~d~~-~~l~~~~~~I~~   84 (113)
T cd03006           7 QRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD-QVLFVAINCWWP-QGKCRKQKHFFY   84 (113)
T ss_pred             CCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC-hHHHHHhcCCcc
Confidence            447899999999999855556899999999999999999999999999999987 799999999999 888833899999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      +||+++|++|+. +..|.| .++.+.|..|+
T Consensus        85 ~PTl~lf~~g~~-~~~y~G-~~~~~~i~~~~  113 (113)
T cd03006          85 FPVIHLYYRSRG-PIEYKG-PMRAPYMEKFV  113 (113)
T ss_pred             cCEEEEEECCcc-ceEEeC-CCCHHHHHhhC
Confidence            999999998875 677887 79999998873

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.87  E-value=1.9e-21  Score=149.57  Aligned_cols=99  Identities=27%  Similarity=0.640  Sum_probs=90.8

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|++|+.++|++.+.   ++++++|.|||+||++|+.+.|.|+++++.+++ .+.|++|||+++ +.++ ++++|+++||
T Consensus         2 ~~~~l~~~~f~~~v~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt   75 (101)
T cd03003           2 EIVTLDRGDFDAAVN---SGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDD-RMLC-RSQGVNSYPS   75 (101)
T ss_pred             CeEEcCHhhHHHHhc---CCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCcc-HHHH-HHcCCCccCE
Confidence            578999999999886   679999999999999999999999999999987 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAF  356 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~  356 (361)
                      +++|++|+. ...|.| .++.++|.+|
T Consensus        76 ~~~~~~g~~-~~~~~G-~~~~~~l~~f  100 (101)
T cd03003          76 LYVFPSGMN-PEKYYG-DRSKESLVKF  100 (101)
T ss_pred             EEEEcCCCC-cccCCC-CCCHHHHHhh
Confidence            999999875 566776 7999999887

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.4e-21  Score=154.74  Aligned_cols=104  Identities=20%  Similarity=0.362  Sum_probs=93.1

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .+..++..+|++.+.  +++.||+|+|||+||+||+.+.|.++++++.|.+ .+.|++||+|++ .+++ .+|+|..+||
T Consensus        44 ~~~~~s~~~~~~~Vi--~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g-~~k~~kvdtD~~-~ela-~~Y~I~avPt  118 (150)
T KOG0910|consen   44 LFNVQSDSEFDDKVI--NSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG-KFKLYKVDTDEH-PELA-EDYEISAVPT  118 (150)
T ss_pred             cccccCHHHHHHHHH--ccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC-eEEEEEEccccc-cchH-hhcceeeeeE
Confidence            456678889988653  6899999999999999999999999999999988 899999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|++ ...+.| ..+.+.|.++|+++
T Consensus       119 vlvfknGe~-~d~~vG-~~~~~~l~~~i~k~  147 (150)
T KOG0910|consen  119 VLVFKNGEK-VDRFVG-AVPKEQLRSLIKKF  147 (150)
T ss_pred             EEEEECCEE-eeeecc-cCCHHHHHHHHHHH
Confidence            999999984 334444 79999999999986

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.86  E-value=3.9e-21  Score=148.63  Aligned_cols=102  Identities=34%  Similarity=0.661  Sum_probs=91.4

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|.+++.++|++.+.  +++++++|.|||+||++|+.+.|.|+++++.+.+ .+.|++||++++ .+++ ++|+|+++||
T Consensus         2 ~v~~l~~~~f~~~i~--~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~i~~~Pt   76 (104)
T cd03004           2 SVITLTPEDFPELVL--NRKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQKY-ESLC-QQANIRAYPT   76 (104)
T ss_pred             cceEcCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCch-HHHH-HHcCCCcccE
Confidence            578899999999875  3577999999999999999999999999999987 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCC-HHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRD-VDSLMAFV  357 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~-~~~l~~~i  357 (361)
                      +++|++|++....|.| ..+ .++|.+||
T Consensus        77 ~~~~~~g~~~~~~~~G-~~~~~~~l~~~i  104 (104)
T cd03004          77 IRLYPGNASKYHSYNG-WHRDADSILEFI  104 (104)
T ss_pred             EEEEcCCCCCceEccC-CCCCHHHHHhhC
Confidence            9999998555788887 565 99999885

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.86  E-value=5.7e-21  Score=148.78  Aligned_cols=102  Identities=27%  Similarity=0.544  Sum_probs=91.7

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-----CCeEEEEEEcCCCchHHHHHcCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQL  324 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-----~~v~~~~vd~~~~~~~l~~~~~~v  324 (361)
                      .|.++++++|++.++   .+++++|.||||||++|+.+.|.|+++++.+++     ..+.|++|||+.+ .+++ ++|+|
T Consensus         2 ~v~~l~~~~f~~~i~---~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~-~~~~v   76 (108)
T cd02996           2 EIVSLTSGNIDDILQ---SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIA-DRYRI   76 (108)
T ss_pred             ceEEcCHhhHHHHHh---cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHH-HhCCC
Confidence            588999999999876   788999999999999999999999999988753     1589999999999 9999 99999


Q ss_pred             CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      +++||+++|++|+.....|.| .++.++|.+||
T Consensus        77 ~~~Ptl~~~~~g~~~~~~~~g-~~~~~~l~~fi  108 (108)
T cd02996          77 NKYPTLKLFRNGMMMKREYRG-QRSVEALAEFV  108 (108)
T ss_pred             CcCCEEEEEeCCcCcceecCC-CCCHHHHHhhC
Confidence            999999999999854577777 79999999986

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.85  E-value=9.4e-21  Score=148.36  Aligned_cols=104  Identities=22%  Similarity=0.295  Sum_probs=93.5

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChh--HH--hhHHHHHHHHHHh--cCCCeEEEEEEcCCCchHHHHHcC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF--CQ--AMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQKL  322 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~--C~--~~~p~~~~la~~~--~~~~v~~~~vd~~~~~~~l~~~~~  322 (361)
                      ..|..||++||++.+.  +++.++|++||++||++  |+  .+.|.+.++++++  ++ ++.|++||++++ ++++ ++|
T Consensus         9 ~~v~~lt~~nF~~~v~--~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~-~v~~~kVD~d~~-~~La-~~~   83 (120)
T cd03065           9 DRVIDLNEKNYKQVLK--KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK-GIGFGLVDSKKD-AKVA-KKL   83 (120)
T ss_pred             cceeeCChhhHHHHHH--hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC-CCEEEEEeCCCC-HHHH-HHc
Confidence            5789999999999875  46678899999999987  99  8999999999998  66 799999999999 9999 999


Q ss_pred             CCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|.++||+++|++|+  .+.+.| .++.+.|.+||+++
T Consensus        84 ~I~~iPTl~lfk~G~--~v~~~G-~~~~~~l~~~l~~~  118 (120)
T cd03065          84 GLDEEDSIYVFKDDE--VIEYDG-EFAADTLVEFLLDL  118 (120)
T ss_pred             CCccccEEEEEECCE--EEEeeC-CCCHHHHHHHHHHH
Confidence            999999999999998  556777 78999999999986

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.84  E-value=2.1e-20  Score=145.74  Aligned_cols=108  Identities=68%  Similarity=1.119  Sum_probs=94.1

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|++++.++|++++...+++++++|.||++||++|+.+.|.|+++++.+++.++.++.||++.++..++.+.++|+++||
T Consensus         2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt   81 (109)
T cd02993           2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT   81 (109)
T ss_pred             cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence            58899999999998655678999999999999999999999999999998646999999999832778823599999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      +++|++|......|.|..++.++|..||
T Consensus        82 i~~f~~~~~~~~~y~g~~~~~~~l~~f~  109 (109)
T cd02993          82 ILFFPKNSRQPIKYPSEQRDVDSLLMFV  109 (109)
T ss_pred             EEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence            9999888766889998558999999885

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.84  E-value=3.1e-20  Score=143.06  Aligned_cols=102  Identities=30%  Similarity=0.618  Sum_probs=93.8

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      |..+|+++|++.+.  +++++++|.||++||++|+.+.|.|+++++.+++ ++.|+.||++++ ..++ ++|+|.++||+
T Consensus         1 v~~lt~~~f~~~i~--~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt~   75 (103)
T PF00085_consen    1 VIVLTDENFEKFIN--ESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELC-KKYGVKSVPTI   75 (103)
T ss_dssp             SEEESTTTHHHHHT--TTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHH-HHTTCSSSSEE
T ss_pred             CEECCHHHHHHHHH--ccCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhh-hccCCCCCCEE
Confidence            57899999999887  2489999999999999999999999999999997 899999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++|++|+. ...+.| .++.++|.+||++
T Consensus        76 ~~~~~g~~-~~~~~g-~~~~~~l~~~i~~  102 (103)
T PF00085_consen   76 IFFKNGKE-VKRYNG-PRNAESLIEFIEK  102 (103)
T ss_dssp             EEEETTEE-EEEEES-SSSHHHHHHHHHH
T ss_pred             EEEECCcE-EEEEEC-CCCHHHHHHHHHc
Confidence            99999985 447776 6899999999986

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.84  E-value=3.6e-20  Score=142.42  Aligned_cols=100  Identities=26%  Similarity=0.557  Sum_probs=89.3

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|.+|+.++|+++++    +. ++|+|||+||++|+.+.|.|+++++.+++.++.|++||++.+ +.++ ++|+|.++||
T Consensus         2 ~v~~l~~~~f~~~~~----~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~-~~~~i~~~Pt   74 (101)
T cd02994           2 NVVELTDSNWTLVLE----GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-PGLS-GRFFVTALPT   74 (101)
T ss_pred             ceEEcChhhHHHHhC----CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-HhHH-HHcCCcccCE
Confidence            588999999998764    33 899999999999999999999999988654699999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +++|++|+  ...+.| .++.++|.+||++
T Consensus        75 ~~~~~~g~--~~~~~G-~~~~~~l~~~i~~  101 (101)
T cd02994          75 IYHAKDGV--FRRYQG-PRDKEDLISFIEE  101 (101)
T ss_pred             EEEeCCCC--EEEecC-CCCHHHHHHHHhC
Confidence            99999887  567777 7999999999874

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.83  E-value=3.3e-20  Score=144.93  Aligned_cols=105  Identities=23%  Similarity=0.355  Sum_probs=89.5

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~  331 (361)
                      ..++.++|++.+...+.+++++|+||||||++|+.+.|.++++++.+++.++.|++||++.+ +.++ ++++|.++||++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-~~l~-~~~~V~~~Pt~~   84 (111)
T cd02963           7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-RRLA-RKLGAHSVPAIV   84 (111)
T ss_pred             heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-HHHH-HHcCCccCCEEE
Confidence            34677888765432346899999999999999999999999999999864699999999999 9999 999999999999


Q ss_pred             EEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          332 FFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|++|+  ...+..|..+.+.|.+||+++
T Consensus        85 i~~~g~--~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          85 GIINGQ--VTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             EEECCE--EEEEecCCCCHHHHHHHHhcC
Confidence            999887  454444478999999999875

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=7.2e-20  Score=160.27  Aligned_cols=107  Identities=22%  Similarity=0.427  Sum_probs=98.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..|.++|..||++.+...+..+||+|+||+|||++|+.+.|.+++++..++| .+.+++||||.+ +.++ .+|+|+++|
T Consensus        23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~-p~vA-aqfgiqsIP   99 (304)
T COG3118          23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAE-PMVA-AQFGVQSIP   99 (304)
T ss_pred             ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcc-hhHH-HHhCcCcCC
Confidence            3499999999999887677788999999999999999999999999999999 999999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |++.|++|+. ...|.| ....+.+.+||+++
T Consensus       100 tV~af~dGqp-VdgF~G-~qPesqlr~~ld~~  129 (304)
T COG3118         100 TVYAFKDGQP-VDGFQG-AQPESQLRQFLDKV  129 (304)
T ss_pred             eEEEeeCCcC-ccccCC-CCcHHHHHHHHHHh
Confidence            9999999994 556665 78889999999875

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.82  E-value=1.3e-19  Score=141.28  Aligned_cols=103  Identities=25%  Similarity=0.497  Sum_probs=91.9

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC--CchHHHHHcCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQKEYAKQKLQLGSF  327 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--~~~~l~~~~~~v~~~  327 (361)
                      .|.+|++++|++.+.  +.+++++|.|||+||++|+.+.|.++++++.+.+ .+.|+.||++.  + .+++ ++|+|+++
T Consensus         1 ~v~~l~~~~~~~~i~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~~~~-~~~~-~~~~i~~~   75 (109)
T cd03002           1 PVYELTPKNFDKVVH--NTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDEDKN-KPLC-GKYGVQGF   75 (109)
T ss_pred             CeEEcchhhHHHHHh--cCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCcccc-HHHH-HHcCCCcC
Confidence            367899999999875  4577899999999999999999999999999987 79999999998  7 8999 99999999


Q ss_pred             CeEEEEeCCC----CCeeecCCCCCCHHHHHHHHH
Q 018045          328 PTILFFPKHS----SKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       328 Pt~~~~~~g~----~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      ||+++|++|+    .....|.| .++.++|.+||.
T Consensus        76 Pt~~~~~~~~~~~~~~~~~~~G-~~~~~~l~~fi~  109 (109)
T cd03002          76 PTLKVFRPPKKASKHAVEDYNG-ERSAKAIVDFVL  109 (109)
T ss_pred             CEEEEEeCCCcccccccccccC-ccCHHHHHHHhC
Confidence            9999999886    23677877 799999999983

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.81  E-value=4.8e-19  Score=136.54  Aligned_cols=102  Identities=29%  Similarity=0.593  Sum_probs=92.0

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|.++++++|++.+.  +.+++++|.||++||++|+.+.|.|.++++.+.+ .+.|+.+|++++ .+++ ++|+|+++|+
T Consensus         1 ~v~~l~~~~~~~~i~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~-~~~~-~~~~i~~~P~   75 (103)
T cd03001           1 DVVELTDSNFDKKVL--NSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH-QSLA-QQYGVRGFPT   75 (103)
T ss_pred             CeEEcCHHhHHHHHh--cCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch-HHHH-HHCCCCccCE
Confidence            367899999999875  3566799999999999999999999999999987 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      +++|++|+.....|.| ..+.++|.+|+
T Consensus        76 ~~~~~~~~~~~~~~~g-~~~~~~l~~~~  102 (103)
T cd03001          76 IKVFGAGKNSPQDYQG-GRTAKAIVSAA  102 (103)
T ss_pred             EEEECCCCcceeecCC-CCCHHHHHHHh
Confidence            9999999655788888 69999999986

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.81  E-value=4.3e-19  Score=154.06  Aligned_cols=107  Identities=32%  Similarity=0.643  Sum_probs=95.5

Q ss_pred             CCCceecCcccHHHHHhhc--CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLD--HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      .+.|.++++++|++++...  ..+++++|+|||+||++|+.+.|.|+++++.+++ .+.|+.||++++ .+++ ++|+|.
T Consensus        29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~-~~l~-~~~~I~  105 (224)
T PTZ00443         29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA-LNLA-KRFAIK  105 (224)
T ss_pred             CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc-HHHH-HHcCCC
Confidence            3579999999999987522  1368999999999999999999999999999987 799999999999 9999 999999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++||+++|++|+  ...+.+|.++.++|.+|+.+
T Consensus       106 ~~PTl~~f~~G~--~v~~~~G~~s~e~L~~fi~~  137 (224)
T PTZ00443        106 GYPTLLLFDKGK--MYQYEGGDRSTEKLAAFALG  137 (224)
T ss_pred             cCCEEEEEECCE--EEEeeCCCCCHHHHHHHHHH
Confidence            999999999987  67776668999999999875

>PHA02278 thioredoxin-like protein

Probab=99.80  E-value=3.2e-19  Score=136.54  Aligned_cols=94  Identities=10%  Similarity=0.159  Sum_probs=78.5

Q ss_pred             cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEE
Q 018045          256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF  332 (361)
Q Consensus       256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~  332 (361)
                      .++|++.+.   ++++++|+|||+||++|+.|.|.++++++.+.. .+.|++||++.++   .+++ ++|+|.++||+++
T Consensus         4 ~~~~~~~i~---~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~~~~d~~~l~-~~~~I~~iPT~i~   78 (103)
T PHA02278          4 LVDLNTAIR---QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDAEDVDREKAV-KLFDIMSTPVLIG   78 (103)
T ss_pred             HHHHHHHHh---CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCccccccHHHH-HHCCCccccEEEE
Confidence            456777775   899999999999999999999999999988655 5789999999762   5799 9999999999999


Q ss_pred             EeCCCCCeeecCCCCCCHHHHHHH
Q 018045          333 FPKHSSKPIKYPSERRDVDSLMAF  356 (361)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~l~~~  356 (361)
                      |++|+  .+....|..+.+.|.++
T Consensus        79 fk~G~--~v~~~~G~~~~~~l~~~  100 (103)
T PHA02278         79 YKDGQ--LVKKYEDQVTPMQLQEL  100 (103)
T ss_pred             EECCE--EEEEEeCCCCHHHHHhh
Confidence            99998  44444336788887765

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.80  E-value=4.3e-19  Score=136.55  Aligned_cols=100  Identities=28%  Similarity=0.595  Sum_probs=88.5

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ++.+|++++|++.+.   + +.++|.|||+||++|+.+.|.++++++.+++  ..+.|+.||++.+ ..++ ++|+|.++
T Consensus         1 ~~~~l~~~~f~~~~~---~-~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~~   74 (102)
T cd03005           1 GVLELTEDNFDHHIA---E-GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-RELC-SEFQVRGY   74 (102)
T ss_pred             CeeECCHHHHHHHhh---c-CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-hhhH-hhcCCCcC
Confidence            367899999999885   3 3599999999999999999999999999975  3699999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      ||+++|++|+. ...+.| ..+.++|.+||
T Consensus        75 Pt~~~~~~g~~-~~~~~G-~~~~~~l~~~i  102 (102)
T cd03005          75 PTLLLFKDGEK-VDKYKG-TRDLDSLKEFV  102 (102)
T ss_pred             CEEEEEeCCCe-eeEeeC-CCCHHHHHhhC
Confidence            99999998874 566777 78999998875

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.80  E-value=1.9e-19  Score=138.77  Aligned_cols=79  Identities=13%  Similarity=0.260  Sum_probs=71.4

Q ss_pred             cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeC
Q 018045          256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK  335 (361)
Q Consensus       256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~  335 (361)
                      .++|++.+. .+.+++++|.|||+||++|+.|.|.++++++++++ .+.|++||++++ ++++ ++|+|.++||+++|++
T Consensus         2 ~~~~~~~i~-~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~-~v~f~kVDvD~~-~~la-~~~~V~~iPTf~~fk~   77 (114)
T cd02954           2 GWAVDQAIL-SEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN-FAVIYLVDIDEV-PDFN-KMYELYDPPTVMFFFR   77 (114)
T ss_pred             HHHHHHHHh-ccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-ceEEEEEECCCC-HHHH-HHcCCCCCCEEEEEEC
Confidence            456777764 23588999999999999999999999999999987 689999999999 9999 9999999999999999


Q ss_pred             CCC
Q 018045          336 HSS  338 (361)
Q Consensus       336 g~~  338 (361)
                      |+.
T Consensus        78 G~~   80 (114)
T cd02954          78 NKH   80 (114)
T ss_pred             CEE
Confidence            985

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PRK10996 thioredoxin 2; Provisional

Probab=99.80  E-value=2.8e-18  Score=139.39  Aligned_cols=104  Identities=16%  Similarity=0.412  Sum_probs=92.8

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .+.+++..+|+++++   ++++++|+||++||++|+.+.|.|+++++.+.+ ++.|++||++.+ ++++ ++|+|.++||
T Consensus        36 ~~i~~~~~~~~~~i~---~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~V~~~Pt  109 (139)
T PRK10996         36 EVINATGETLDKLLQ---DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAE-RELS-ARFRIRSIPT  109 (139)
T ss_pred             CCEEcCHHHHHHHHh---CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCC-HHHH-HhcCCCccCE
Confidence            466789999999876   789999999999999999999999999999887 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      +++|++|+. ...+.| ..+.+.|.+||+++.
T Consensus       110 lii~~~G~~-v~~~~G-~~~~e~l~~~l~~~~  139 (139)
T PRK10996        110 IMIFKNGQV-VDMLNG-AVPKAPFDSWLNEAL  139 (139)
T ss_pred             EEEEECCEE-EEEEcC-CCCHHHHHHHHHHhC
Confidence            999998873 334455 789999999999863

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.80  E-value=4.8e-19  Score=135.50  Aligned_cols=92  Identities=24%  Similarity=0.440  Sum_probs=80.6

Q ss_pred             cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHHHcCCCCCCCeEEEEeCC
Q 018045          258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      ++.+++. ..++++++|.|||+||++|+.+.|.|+++++.+++  +.++.||.+ .+ ++++ ++|+|.++||+++|++|
T Consensus         8 ~~~~~~~-~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~~~~~-~~l~-~~~~V~~~PT~~lf~~g   82 (100)
T cd02999           8 IALDLMA-FNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEESSIK-PSLL-SRYGVVGFPTILLFNST   82 (100)
T ss_pred             HHHHHHH-hcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEECCCCC-HHHH-HhcCCeecCEEEEEcCC
Confidence            4444443 35789999999999999999999999999999975  889999999 67 8999 99999999999999988


Q ss_pred             CCCeeecCCCCCCHHHHHHHH
Q 018045          337 SSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~i  357 (361)
                       . ...+.| .++.++|.+||
T Consensus        83 -~-~~~~~G-~~~~~~l~~f~  100 (100)
T cd02999          83 -P-RVRYNG-TRTLDSLAAFY  100 (100)
T ss_pred             -c-eeEecC-CCCHHHHHhhC
Confidence             3 778887 69999999985

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.79  E-value=8.2e-19  Score=134.98  Aligned_cols=98  Identities=18%  Similarity=0.309  Sum_probs=84.8

Q ss_pred             cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEE
Q 018045          254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF  333 (361)
Q Consensus       254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~  333 (361)
                      -+.++|++++.   ++++++|+|||+||++|+.+.|.++++++.+++..+.|+.+|++ + .+++ ++|+|+++||+++|
T Consensus         5 ~~~~~~~~~i~---~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~~~-~~~~v~~~Pt~~~~   78 (102)
T cd02948           5 NNQEEWEELLS---NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-IDTL-KRYRGKCEPTFLFY   78 (102)
T ss_pred             cCHHHHHHHHc---cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HHHH-HHcCCCcCcEEEEE
Confidence            36788888776   79999999999999999999999999999997545899999999 6 7889 99999999999999


Q ss_pred             eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          334 PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+  ......| .+.+.|.++|+++
T Consensus        79 ~~g~--~~~~~~G-~~~~~~~~~i~~~  102 (102)
T cd02948          79 KNGE--LVAVIRG-ANAPLLNKTITEL  102 (102)
T ss_pred             ECCE--EEEEEec-CChHHHHHHHhhC
Confidence            9988  4444443 5889999999875

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.79  E-value=1.1e-18  Score=132.83  Aligned_cols=96  Identities=18%  Similarity=0.327  Sum_probs=83.0

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      ++|++.+. .+.+++++|+|||+||++|+.+.|.++++++.+.+ .+.+++||++.+ ..++ ++|+|.++||+++|++|
T Consensus         1 ~~f~~~i~-~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~i~~~Pt~~~~~~g   76 (96)
T cd02956           1 QNFQQVLQ-ESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQ-PQIA-QQFGVQALPTVYLFAAG   76 (96)
T ss_pred             CChHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCC-HHHH-HHcCCCCCCEEEEEeCC
Confidence            35777664 23478999999999999999999999999999987 799999999999 9999 99999999999999988


Q ss_pred             CCCeeecCCCCCCHHHHHHHHH
Q 018045          337 SSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      +. ...+.| ..+.++|.+||+
T Consensus        77 ~~-~~~~~g-~~~~~~l~~~l~   96 (96)
T cd02956          77 QP-VDGFQG-AQPEEQLRQMLD   96 (96)
T ss_pred             EE-eeeecC-CCCHHHHHHHhC
Confidence            73 345665 789999999874

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK09381 trxA thioredoxin; Provisional

Probab=99.79  E-value=2e-18  Score=134.61  Aligned_cols=106  Identities=24%  Similarity=0.397  Sum_probs=92.6

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      +..|.++++++|++.+.  +.+++++|+||++||++|+.+.|.++++++.+.+ ++.|+.||++.+ ..++ ++|+|.++
T Consensus         2 ~~~v~~~~~~~~~~~v~--~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~   76 (109)
T PRK09381          2 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI   76 (109)
T ss_pred             CCcceeeChhhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCC-hhHH-HhCCCCcC
Confidence            45689999999997553  3688999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+.++|.++|++.
T Consensus        77 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~  107 (109)
T PRK09381         77 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN  107 (109)
T ss_pred             CEEEEEeCCeE-EEEecC-CCCHHHHHHHHHHh
Confidence            99999998873 334445 68899999999764

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.78  E-value=2.6e-18  Score=132.55  Aligned_cols=102  Identities=34%  Similarity=0.716  Sum_probs=89.4

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +|.+|+.++|++.+.  +.+++++|+||++||++|+.+.|.++++++.+++ .++.|+++|++.+  +++ ..+++.++|
T Consensus         1 ~v~~l~~~~f~~~i~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~-~~~~~~~~P   75 (104)
T cd02995           1 PVKVVVGKNFDEVVL--DSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--DVP-SEFVVDGFP   75 (104)
T ss_pred             CeEEEchhhhHHHHh--CCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--hhh-hhccCCCCC
Confidence            378899999999875  3568999999999999999999999999999976 4699999999987  577 789999999


Q ss_pred             eEEEEeCCC-CCeeecCCCCCCHHHHHHHH
Q 018045          329 TILFFPKHS-SKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       329 t~~~~~~g~-~~~~~~~~~~~~~~~l~~~i  357 (361)
                      |+++|++|+ .....|.| ..+.++|.+||
T Consensus        76 t~~~~~~~~~~~~~~~~g-~~~~~~l~~fi  104 (104)
T cd02995          76 TILFFPAGDKSNPIKYEG-DRTLEDLIKFI  104 (104)
T ss_pred             EEEEEcCCCcCCceEccC-CcCHHHHHhhC
Confidence            999999887 33677887 79999999886

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.78  E-value=3.2e-18  Score=132.14  Aligned_cols=101  Identities=21%  Similarity=0.511  Sum_probs=89.2

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCC--CchHHHHHcCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG--DQKEYAKQKLQLGS  326 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~--~~~~l~~~~~~v~~  326 (361)
                      +|.++++.+|++.++   .+++++|+||++||++|+.+.|.++++++.+++ ..+.++.+|++.  + ..++ ++|+|++
T Consensus         1 ~~~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~-~~~~i~~   75 (104)
T cd02997           1 DVVHLTDEDFRKFLK---KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH-DALK-EEYNVKG   75 (104)
T ss_pred             CeEEechHhHHHHHh---hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc-HHHH-HhCCCcc
Confidence            367889999999887   777999999999999999999999999999973 368999999998  7 8999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      +||+++|++|+. ...+.| ..+.+.|.+||
T Consensus        76 ~Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l  104 (104)
T cd02997          76 FPTFKYFENGKF-VEKYEG-ERTAEDIIEFM  104 (104)
T ss_pred             ccEEEEEeCCCe-eEEeCC-CCCHHHHHhhC
Confidence            999999998874 566766 68999998885

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.78  E-value=3.1e-18  Score=131.96  Aligned_cols=98  Identities=11%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEE
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILF  332 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~  332 (361)
                      +.++|++.+. ...+++++|+|||+||++|+.+.|.++++++.+ . ++.|++||++++.  .+++ ++|+|.++||+++
T Consensus         2 ~~~~~~~~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~-~v~~~~vd~d~~~~~~~l~-~~~~V~~~Pt~~~   77 (103)
T cd02985           2 SVEELDEALK-KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N-DVVFLLVNGDENDSTMELC-RREKIIEVPHFLF   77 (103)
T ss_pred             CHHHHHHHHH-HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C-CCEEEEEECCCChHHHHHH-HHcCCCcCCEEEE
Confidence            4567888775 234899999999999999999999999999999 3 6999999999872  3789 8999999999999


Q ss_pred             EeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          333 FPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      |++|+. ...+.|  ...++|.+.+..
T Consensus        78 ~~~G~~-v~~~~G--~~~~~l~~~~~~  101 (103)
T cd02985          78 YKDGEK-IHEEEG--IGPDELIGDVLY  101 (103)
T ss_pred             EeCCeE-EEEEeC--CCHHHHHHHHHh
Confidence            999874 556665  667888877654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.77  E-value=3.6e-18  Score=131.98  Aligned_cols=102  Identities=36%  Similarity=0.743  Sum_probs=90.3

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCC-CchHHHHHcCCCCCCC
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADG-DQKEYAKQKLQLGSFP  328 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~-~~~~l~~~~~~v~~~P  328 (361)
                      |.++++++|++.+.  +.+++++|.||++||++|+.+.|.++++++.++. .++.++.+|++. + .+++ ++|+|.++|
T Consensus         2 ~~~l~~~~~~~~~~--~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~-~~~~i~~~P   77 (105)
T cd02998           2 VVELTDSNFDKVVG--DDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-KDLA-KKYGVSGFP   77 (105)
T ss_pred             eEEcchhcHHHHhc--CCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-hhhH-HhCCCCCcC
Confidence            67889999999765  3466999999999999999999999999999973 369999999999 8 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      ++++|++|+.....+.| .++.++|.+||
T Consensus        78 ~~~~~~~~~~~~~~~~g-~~~~~~l~~~i  105 (105)
T cd02998          78 TLKFFPKGSTEPVKYEG-GRDLEDLVKFV  105 (105)
T ss_pred             EEEEEeCCCCCccccCC-ccCHHHHHhhC
Confidence            99999888655777877 69999999885

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.77  E-value=3.5e-18  Score=139.66  Aligned_cols=87  Identities=22%  Similarity=0.466  Sum_probs=78.4

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC--
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS--  326 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~--  326 (361)
                      ..+.+++.++|++.+. .+.+++++|+|||+||++|+.+.|.++++++.+++.++.|++||++++ ++++ ++|+|.+  
T Consensus        28 ~~v~~l~~~~f~~~l~-~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la-~~~~V~~~~  104 (152)
T cd02962          28 EHIKYFTPKTLEEELE-RDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVA-EKFRVSTSP  104 (152)
T ss_pred             CccEEcCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHH-HHcCceecC
Confidence            5788999999999775 234679999999999999999999999999999754699999999999 9999 9999988  


Q ss_pred             ----CCeEEEEeCCCC
Q 018045          327 ----FPTILFFPKHSS  338 (361)
Q Consensus       327 ----~Pt~~~~~~g~~  338 (361)
                          +||+++|++|+.
T Consensus       105 ~v~~~PT~ilf~~Gk~  120 (152)
T cd02962         105 LSKQLPTIILFQGGKE  120 (152)
T ss_pred             CcCCCCEEEEEECCEE
Confidence                999999999985

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.6e-18  Score=131.53  Aligned_cols=86  Identities=22%  Similarity=0.368  Sum_probs=76.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      .+++++|+|||+||+||+.+.|.+.+++.+|++  +.|++||+|+. .+++ ++++|..+||+++|++|++ ...+.|  
T Consensus        20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde~-~~~~-~~~~V~~~PTf~f~k~g~~-~~~~vG--   92 (106)
T KOG0907|consen   20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDEL-EEVA-KEFNVKAMPTFVFYKGGEE-VDEVVG--   92 (106)
T ss_pred             CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecccC-HhHH-HhcCceEeeEEEEEECCEE-EEEEec--
Confidence            469999999999999999999999999999986  99999999996 9999 9999999999999999985 555555  


Q ss_pred             CCHHHHHHHHHHh
Q 018045          348 RDVDSLMAFVDAL  360 (361)
Q Consensus       348 ~~~~~l~~~i~~~  360 (361)
                      .+.++|.+.|.+.
T Consensus        93 a~~~~l~~~i~~~  105 (106)
T KOG0907|consen   93 ANKAELEKKIAKH  105 (106)
T ss_pred             CCHHHHHHHHHhc
Confidence            5667888888764

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.77  E-value=5.8e-18  Score=130.08  Aligned_cols=100  Identities=32%  Similarity=0.735  Sum_probs=91.2

Q ss_pred             cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC-CeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045          254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTILF  332 (361)
Q Consensus       254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~  332 (361)
                      |++++|++.+.   ++++++|+||++||++|+.+.|.++++++.+++. ++.++.+|++++ ..++ ++|+|.++|++++
T Consensus         1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~~i~~~P~~~~   75 (102)
T TIGR01126         1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-KDLA-SRFGVSGFPTIKF   75 (102)
T ss_pred             CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-HHHH-HhCCCCcCCEEEE
Confidence            57789999886   8999999999999999999999999999999863 599999999999 9999 9999999999999


Q ss_pred             EeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          333 FPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |++|+. ...|.| ..+.++|..||++.
T Consensus        76 ~~~~~~-~~~~~g-~~~~~~l~~~i~~~  101 (102)
T TIGR01126        76 FPKGKK-PVDYEG-GRDLEAIVEFVNEK  101 (102)
T ss_pred             ecCCCc-ceeecC-CCCHHHHHHHHHhc
Confidence            998886 778887 78999999999874

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=99.77  E-value=3.7e-18  Score=132.03  Aligned_cols=101  Identities=20%  Similarity=0.320  Sum_probs=85.3

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEEC--CCCh---hHHhhHHHHHHHHHHhcCCCeEEEEEEcC-----CCchHHHH
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQ---FCQAMEGSYVELADKLAGNGVKVGKFRAD-----GDQKEYAK  319 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a--~wC~---~C~~~~p~~~~la~~~~~~~v~~~~vd~~-----~~~~~l~~  319 (361)
                      .++.|+++||++.+.   +++.+||.|||  |||+   +|+.+.|++.+.+.     .|.+++|||+     .+ .+|| 
T Consensus         2 g~v~L~~~nF~~~v~---~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-----~v~lakVd~~d~~~~~~-~~L~-   71 (116)
T cd03007           2 GCVDLDTVTFYKVIP---KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-----DLLVAEVGIKDYGEKLN-MELG-   71 (116)
T ss_pred             CeeECChhhHHHHHh---cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-----ceEEEEEecccccchhh-HHHH-
Confidence            478899999999987   89999999999  8888   77777777666553     4899999994     45 8999 


Q ss_pred             HcCCCC--CCCeEEEEeCCC-CCeeecCCCCCCHHHHHHHHHHh
Q 018045          320 QKLQLG--SFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~--~~Pt~~~~~~g~-~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+|+  ++||+.+|++|. ..++.|.|+.++.+.|++||++.
T Consensus        72 ~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~  115 (116)
T cd03007          72 ERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN  115 (116)
T ss_pred             HHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence            999999  999999999984 33688998349999999999863

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.77  E-value=2.9e-18  Score=131.19  Aligned_cols=99  Identities=12%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCC--ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      .....+++..||++.+.   .+..++|.||++|  |++|+.+.|.|+++++++++ .+.|++||++++ +.++ .+|+|+
T Consensus         9 ~~~~~~~~~~~~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-~v~f~kVdid~~-~~la-~~f~V~   82 (111)
T cd02965           9 RHGWPRVDAATLDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-RFRAAVVGRADE-QALA-ARFGVL   82 (111)
T ss_pred             hcCCcccccccHHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-cEEEEEEECCCC-HHHH-HHcCCC
Confidence            35678899999999886   8999999999997  99999999999999999987 789999999999 9999 999999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHH
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLM  354 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~  354 (361)
                      ++||+++|++|+. .....| ..+.+++.
T Consensus        83 sIPTli~fkdGk~-v~~~~G-~~~~~e~~  109 (111)
T cd02965          83 RTPALLFFRDGRY-VGVLAG-IRDWDEYV  109 (111)
T ss_pred             cCCEEEEEECCEE-EEEEeC-ccCHHHHh
Confidence            9999999999983 334444 67777764

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.76  E-value=1.8e-18  Score=163.41  Aligned_cols=106  Identities=25%  Similarity=0.542  Sum_probs=99.5

Q ss_pred             CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCC
Q 018045          247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQL  324 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v  324 (361)
                      .+..|..|+.+||++.+.   .+..++|.||||||++|+.+.|.+++.|+.++.  ..+..++|||+.+ .++| .+|.|
T Consensus        23 ~~~~Vl~Lt~dnf~~~i~---~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~-~~y~v   97 (493)
T KOG0190|consen   23 AEEDVLVLTKDNFKETIN---GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLA-SKYEV   97 (493)
T ss_pred             cccceEEEecccHHHHhc---cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhH-hhhcC
Confidence            346799999999999998   899999999999999999999999999999987  3899999999999 9999 99999


Q ss_pred             CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++|||+.+|++|.. ...|.| .++++.++.|+++
T Consensus        98 ~gyPTlkiFrnG~~-~~~Y~G-~r~adgIv~wl~k  130 (493)
T KOG0190|consen   98 RGYPTLKIFRNGRS-AQDYNG-PREADGIVKWLKK  130 (493)
T ss_pred             CCCCeEEEEecCCc-ceeccC-cccHHHHHHHHHh
Confidence            99999999999996 699998 7999999999986

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.76  E-value=1e-17  Score=129.35  Aligned_cols=95  Identities=26%  Similarity=0.621  Sum_probs=83.6

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      ++|+++.    .+++++|.|||+||++|+.+.|.|+++++.+++  .++.++.+|++.. .+++ ++|+|.++||+++|+
T Consensus         7 ~~~~~~~----~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~I~~~Pt~~l~~   80 (104)
T cd03000           7 DSFKDVR----KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIA-SEFGVRGYPTIKLLK   80 (104)
T ss_pred             hhhhhhc----cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHH-hhcCCccccEEEEEc
Confidence            6777743    578999999999999999999999999999864  2599999999999 9999 999999999999997


Q ss_pred             CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          335 KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|.  ...+.| ..+.++|.+|++++
T Consensus        81 ~~~--~~~~~G-~~~~~~l~~~~~~~  103 (104)
T cd03000          81 GDL--AYNYRG-PRTKDDIVEFANRV  103 (104)
T ss_pred             CCC--ceeecC-CCCHHHHHHHHHhh
Confidence            764  566777 78999999999976

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.75  E-value=1.3e-17  Score=130.50  Aligned_cols=102  Identities=17%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      +.+.++++ ++|.+.+.   ++++++|+||++||++|+.+.|.++++++.+.+  +.|++||++++ .+++ ++|+|.++
T Consensus         4 g~v~~i~~~~~~~~~i~---~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~~~-~~l~-~~~~v~~v   76 (113)
T cd02989           4 GKYREVSDEKEFFEIVK---SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAEKA-PFLV-EKLNIKVL   76 (113)
T ss_pred             CCeEEeCCHHHHHHHHh---CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcccC-HHHH-HHCCCccC
Confidence            35777777 88888876   789999999999999999999999999999865  89999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCe-----eecCC-CCCCHHHHHHHH
Q 018045          328 PTILFFPKHSSKP-----IKYPS-ERRDVDSLMAFV  357 (361)
Q Consensus       328 Pt~~~~~~g~~~~-----~~~~~-~~~~~~~l~~~i  357 (361)
                      ||+++|++|+...     ....+ +..+.+++..||
T Consensus        77 Pt~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~  112 (113)
T cd02989          77 PTVILFKNGKTVDRIVGFEELGGKDDFSTETLEKRL  112 (113)
T ss_pred             CEEEEEECCEEEEEEECccccCCCCCCCHHHHHHHh
Confidence            9999999997421     12222 457788888776

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.75  E-value=1.5e-17  Score=133.18  Aligned_cols=101  Identities=11%  Similarity=0.192  Sum_probs=84.0

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE-EE
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL-FF  333 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~-~~  333 (361)
                      +..+|++.+. ...+++++|.|||+||++|+.+.|.++++++.+++ .+.|++||+|++ ++++ +.|+|++.|+++ +|
T Consensus        10 s~~e~d~~I~-~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~-~~~~~kVDVDe~-~dla-~~y~I~~~~t~~~ff   85 (142)
T PLN00410         10 SGWAVDQAIL-AEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN-FAVIYLVDITEV-PDFN-TMYELYDPCTVMFFF   85 (142)
T ss_pred             CHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCCC-HHHH-HHcCccCCCcEEEEE
Confidence            4577888774 23688999999999999999999999999999987 688899999999 9999 999999887666 88


Q ss_pred             eCCCCCeeecCCC--------CCCHHHHHHHHHHh
Q 018045          334 PKHSSKPIKYPSE--------RRDVDSLMAFVDAL  360 (361)
Q Consensus       334 ~~g~~~~~~~~~~--------~~~~~~l~~~i~~~  360 (361)
                      ++|+. .+.+..|        ..+.++|++.++.+
T Consensus        86 k~g~~-~vd~~tG~~~k~~~~~~~k~~l~~~i~~~  119 (142)
T PLN00410         86 RNKHI-MIDLGTGNNNKINWALKDKQEFIDIVETV  119 (142)
T ss_pred             ECCeE-EEEEecccccccccccCCHHHHHHHHHHH
Confidence            98875 4444444        46888888888754

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.74  E-value=2.7e-17  Score=125.65  Aligned_cols=100  Identities=10%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      ++|++.+.. ..+++|+|.|+|+||++|+.|.|.++++++++++ .+.|++||+|+. ++++ ++|+|...||+++|++|
T Consensus         3 ~~~d~~i~~-~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~-~~~f~kVDVDev-~dva-~~y~I~amPtfvffkng   78 (114)
T cd02986           3 KEVDQAIKS-TAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK-MASIYLVDVDKV-PVYT-QYFDISYIPSTIFFFNG   78 (114)
T ss_pred             HHHHHHHHh-cCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC-ceEEEEEecccc-HHHH-HhcCceeCcEEEEEECC
Confidence            456666642 2689999999999999999999999999999975 499999999999 9999 99999999999999999


Q ss_pred             CCCeeecCCCC--------CCHHHHHHHHHHh
Q 018045          337 SSKPIKYPSER--------RDVDSLMAFVDAL  360 (361)
Q Consensus       337 ~~~~~~~~~~~--------~~~~~l~~~i~~~  360 (361)
                      +.....+..|.        .+.++|++.++.+
T Consensus        79 kh~~~d~gt~~~~k~~~~~~~k~~~idi~e~~  110 (114)
T cd02986          79 QHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  110 (114)
T ss_pred             cEEEEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence            86555555432        3557777777643

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=6.7e-18  Score=159.50  Aligned_cols=123  Identities=26%  Similarity=0.530  Sum_probs=106.9

Q ss_pred             CCCCCCCCCCcccccccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEE
Q 018045          230 GNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKF  308 (361)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~v  308 (361)
                      .....+.-.|++.++-.+..+|..|..+||++++.  +++|.|||.||||||+||+++.|+|++|++.+++ .++.+++|
T Consensus       347 ~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~--de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm  424 (493)
T KOG0190|consen  347 DGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVL--DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM  424 (493)
T ss_pred             cCccccccccCCCCcccccCCeEEEeecCHHHHhh--ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence            34456667778888777778899999999999885  7899999999999999999999999999999998 48999999


Q ss_pred             EcCCCchHHHHHcCCCCCCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 018045          309 RADGDQKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       309 d~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~  359 (361)
                      |.+.|  ++.  ...+.++||+++|+.|.+. ++.|.| .++.++|..||++
T Consensus       425 DaTaN--d~~--~~~~~~fPTI~~~pag~k~~pv~y~g-~R~le~~~~fi~~  471 (493)
T KOG0190|consen  425 DATAN--DVP--SLKVDGFPTILFFPAGHKSNPVIYNG-DRTLEDLKKFIKK  471 (493)
T ss_pred             ccccc--cCc--cccccccceEEEecCCCCCCCcccCC-CcchHHHHhhhcc
Confidence            99999  544  5678889999999888754 888987 7999999999974

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.73  E-value=2.3e-17  Score=129.37  Aligned_cols=103  Identities=17%  Similarity=0.231  Sum_probs=84.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.+.++++++|.+.+...+.+++++|+||+|||++|+.+.|.++++++.+.+  +.|++||++++  .++ ++|+|.++|
T Consensus         4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~~~--~l~-~~~~i~~~P   78 (113)
T cd02957           4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAEKA--FLV-NYLDIKVLP   78 (113)
T ss_pred             ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEchhh--HHH-HhcCCCcCC
Confidence            4578899999998886222348999999999999999999999999999965  89999999976  889 999999999


Q ss_pred             eEEEEeCCCCCeeecCC------CCCCHHHHHHHH
Q 018045          329 TILFFPKHSSKPIKYPS------ERRDVDSLMAFV  357 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~------~~~~~~~l~~~i  357 (361)
                      |+++|++|+.. ....|      ...+.+.|.+++
T Consensus        79 t~~~f~~G~~v-~~~~G~~~~~~~~~~~~~l~~~l  112 (113)
T cd02957          79 TLLVYKNGELI-DNIVGFEELGGDDFTTEDLEKFL  112 (113)
T ss_pred             EEEEEECCEEE-EEEecHHHhCCCCCCHHHHHHHh
Confidence            99999999852 22222      345667776665

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.73  E-value=6.8e-17  Score=126.70  Aligned_cols=103  Identities=24%  Similarity=0.522  Sum_probs=85.0

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCC--CchHHHHHcCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADG--DQKEYAKQKLQLG  325 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~--~~~~l~~~~~~v~  325 (361)
                      .+.+++.++|++.++  +.+++++|+||++||++|+.+.|.|+++++.+++  +.+.|+.|||+.  + .+++ ++|+|+
T Consensus         2 ~v~~l~~~~f~~~i~--~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~-~~~~-~~~~i~   77 (114)
T cd02992           2 PVIVLDAASFNSALL--GSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN-VALC-RDFGVT   77 (114)
T ss_pred             CeEECCHHhHHHHHh--cCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh-HHHH-HhCCCC
Confidence            578999999999886  3457999999999999999999999999999864  258999999864  4 7899 999999


Q ss_pred             CCCeEEEEeCCCCC---eeecCCCCCCHHHHHHH
Q 018045          326 SFPTILFFPKHSSK---PIKYPSERRDVDSLMAF  356 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~---~~~~~~~~~~~~~l~~~  356 (361)
                      ++||+++|++|...   ...+.|..+..+++.+.
T Consensus        78 ~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (114)
T cd02992          78 GYPTLRYFPPFSKEATDGLKQEGPERDVNELREA  111 (114)
T ss_pred             CCCEEEEECCCCccCCCCCcccCCccCHHHHHHH
Confidence            99999999888742   24666655666666543

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>TIGR01068 thioredoxin thioredoxin

Probab=99.72  E-value=9.2e-17  Score=123.04  Aligned_cols=100  Identities=25%  Similarity=0.432  Sum_probs=86.5

Q ss_pred             cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEE
Q 018045          254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF  333 (361)
Q Consensus       254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~  333 (361)
                      ++.++|++.++  +.+++++|.||++||++|+.+.|.++++++.+.+ ++.|+.||++.+ ..++ ++|+|.++|++++|
T Consensus         1 i~~~~~~~~~~--~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~P~~~~~   75 (101)
T TIGR01068         1 LTDANFDETIA--SSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDEN-PDIA-AKYGIRSIPTLLLF   75 (101)
T ss_pred             CCHHHHHHHHh--hcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCcCCEEEEE
Confidence            45678888765  3467999999999999999999999999999986 799999999999 9999 99999999999999


Q ss_pred             eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          334 PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+. ...+.| ..+.++|.+||++.
T Consensus        76 ~~g~~-~~~~~g-~~~~~~l~~~l~~~  100 (101)
T TIGR01068        76 KNGKE-VDRSVG-ALPKAALKQLINKN  100 (101)
T ss_pred             eCCcE-eeeecC-CCCHHHHHHHHHhh
Confidence            98873 334444 78899999999875

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.72  E-value=5.5e-17  Score=123.94  Aligned_cols=99  Identities=31%  Similarity=0.677  Sum_probs=87.2

Q ss_pred             ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045          253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~  331 (361)
                      +|+.++|.+.+.   ++++++|.||++||++|+.+.|.++++++.++ +.++.|+.||++.+ ..++ ++|+|.++||++
T Consensus         2 ~l~~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~i~~~Pt~~   76 (101)
T cd02961           2 ELTDDNFDELVK---DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-NDLC-SEYGVRGYPTIK   76 (101)
T ss_pred             cccHHHHHHHHh---CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-HHHH-HhCCCCCCCEEE
Confidence            578889999887   66699999999999999999999999999994 23799999999998 9999 999999999999


Q ss_pred             EEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          332 FFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      +|++++.....+.| ..+.++|.+|+
T Consensus        77 ~~~~~~~~~~~~~g-~~~~~~i~~~~  101 (101)
T cd02961          77 LFPNGSKEPVKYEG-PRTLESLVEFI  101 (101)
T ss_pred             EEcCCCcccccCCC-CcCHHHHHhhC
Confidence            99888444777777 57899998875

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.70  E-value=1.1e-16  Score=123.60  Aligned_cols=95  Identities=18%  Similarity=0.336  Sum_probs=80.0

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCC---chHHHHHcCCCCCCCeE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD---QKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~---~~~l~~~~~~v~~~Pt~  330 (361)
                      ++|++.++   ++++++|.||++||++|+.+.|.+   .++++.+++ ++.++.||++.+   ..+++ ++|+|.++||+
T Consensus         2 ~~~~~~~~---~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~-~~~~i~~~Pti   76 (104)
T cd02953           2 AALAQALA---QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALL-KRFGVFGPPTY   76 (104)
T ss_pred             HHHHHHHH---cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHH-HHcCCCCCCEE
Confidence            45777776   899999999999999999999998   688888886 799999999873   16888 89999999999


Q ss_pred             EEEeC--CCCCeeecCCCCCCHHHHHHHHH
Q 018045          331 LFFPK--HSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       331 ~~~~~--g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      ++|++  |+. ...+.| ..+.++|.++|+
T Consensus        77 ~~~~~~~g~~-~~~~~G-~~~~~~l~~~l~  104 (104)
T cd02953          77 LFYGPGGEPE-PLRLPG-FLTADEFLEALE  104 (104)
T ss_pred             EEECCCCCCC-Cccccc-ccCHHHHHHHhC
Confidence            99984  552 555555 799999998874

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.70  E-value=1.5e-16  Score=121.26  Aligned_cols=95  Identities=24%  Similarity=0.399  Sum_probs=79.9

Q ss_pred             cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeC
Q 018045          256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK  335 (361)
Q Consensus       256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~  335 (361)
                      .++|++++... .+++++|+||++||++|+.+.|.++++++.+.. ++.+++||+++. .+++ ++|+|.++||+++|++
T Consensus         2 ~~~~~~~~~~~-~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~-~i~~~~vd~~~~-~~~~-~~~~i~~~Pt~~~~~~   77 (97)
T cd02984           2 EEEFEELLKSD-ASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP-SVLFLSIEAEEL-PEIS-EKFEITAVPTFVFFRN   77 (97)
T ss_pred             HHHHHHHHhhC-CCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC-ceEEEEEccccC-HHHH-HhcCCccccEEEEEEC
Confidence            46788877622 259999999999999999999999999999754 799999999999 9999 9999999999999998


Q ss_pred             CCCCeeecCCCCCCHHHHHHHH
Q 018045          336 HSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       336 g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      |+  .+....| .+.+.|.+.|
T Consensus        78 g~--~~~~~~g-~~~~~l~~~~   96 (97)
T cd02984          78 GT--IVDRVSG-ADPKELAKKV   96 (97)
T ss_pred             CE--EEEEEeC-CCHHHHHHhh
Confidence            87  4444332 6788887765

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.69  E-value=1.7e-16  Score=133.55  Aligned_cols=107  Identities=19%  Similarity=0.270  Sum_probs=88.8

Q ss_pred             CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..|.+++. ++|.+.+...+.+.+|||+||++||++|+.|.|.|+++++.+..  +.|++||++..  .++ .+|+|.++
T Consensus        62 g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d~~--~l~-~~f~v~~v  136 (175)
T cd02987          62 GKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRASAT--GAS-DEFDTDAL  136 (175)
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEeccch--hhH-HhCCCCCC
Confidence            56888988 99999886333446999999999999999999999999999964  99999999976  788 89999999


Q ss_pred             CeEEEEeCCCCC--e---eecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSK--P---IKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~--~---~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+..  .   ....|...+.++|..+|.+.
T Consensus       137 PTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         137 PALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             CEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence            999999999852  1   11223467899999998763

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.69  E-value=3.5e-16  Score=127.42  Aligned_cols=98  Identities=22%  Similarity=0.345  Sum_probs=81.1

Q ss_pred             cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEEe
Q 018045          256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      ...|++.+.   .++++||+|||+||++|+.+.|.++++++.+.+ .+.|+.||++... ..++ ++|+|.++||+++|+
T Consensus        10 ~~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~-~~~~V~~iPt~v~~~   84 (142)
T cd02950          10 STPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEI-DRYRVDGIPHFVFLD   84 (142)
T ss_pred             cCCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHH-HHcCCCCCCEEEEEC
Confidence            356777665   899999999999999999999999999999987 6888888887651 4788 899999999999995


Q ss_pred             -CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          335 -KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       335 -~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                       +|+. ...+.| ..+.++|.++|+++
T Consensus        85 ~~G~~-v~~~~G-~~~~~~l~~~l~~l  109 (142)
T cd02950          85 REGNE-EGQSIG-LQPKQVLAQNLDAL  109 (142)
T ss_pred             CCCCE-EEEEeC-CCCHHHHHHHHHHH
Confidence             5652 334444 78889999999875

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]

Probab=99.68  E-value=1.7e-16  Score=135.84  Aligned_cols=154  Identities=15%  Similarity=0.160  Sum_probs=110.3

Q ss_pred             cEEEEecchHHHHHH-HHHHHcC----CCceEEEccCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTG----RPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~----~~i~v~~~dtg~~~--pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +++|++|||+||+++ +++.+..    .++.++|+|+|..+  +++.++++++++.+|++++++.....        .+ 
T Consensus         1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~-   71 (185)
T cd01992           1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLRPESDEEAAFVADLCAKLGIPLYILVVALA--------PK-   71 (185)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHHHHHHHHHHcCCcEEEEeeccc--------cC-
Confidence            589999999999877 8877754    37999999999776  48999999999999999988722100        00 


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCC--CCcC--CcCCCCCeEEEeeCccC
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEG--LEGGVGSLVKWNPVANV  157 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~--~~~~--~~~~~~~~~~~~Pi~~W  157 (361)
                         .......+|...+...+.++..  +.+.+++|++++|.. .+..+.+.....  ....  ......+...++||.+|
T Consensus        72 ---~~~~~~~~~r~~r~~~l~~~a~~~~~~~i~~Gh~~dD~~-e~~l~~l~~g~~~~~l~~~~~~~~~~~~~virPl~~~  147 (185)
T cd01992          72 ---PGGNLEAAAREARYDFFAEIAKEHGADVLLTAHHADDQA-ETVLMRLLRGSGLRGLAGMPARIPFGGGRLIRPLLGI  147 (185)
T ss_pred             ---CCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHH-HHHHHHHHccCCcccccCCCcccCCCCCeEECCCCCC
Confidence               1123445788888888888776  668999999999974 543322221110  0000  00112456789999999


Q ss_pred             cHHHHHHHHHhCCCCCCccc
Q 018045          158 KGNDIWNFLRTMDVPINSLH  177 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~lY  177 (361)
                      ++.||++|.++++||+.+-+
T Consensus       148 ~k~eI~~~~~~~~l~~~~~~  167 (185)
T cd01992         148 TRAEIEAYLRENGLPWWEDP  167 (185)
T ss_pred             CHHHHHHHHHHcCCCeEECC
Confidence            99999999999999986655

This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.66  E-value=1e-15  Score=116.63  Aligned_cols=87  Identities=20%  Similarity=0.342  Sum_probs=77.9

Q ss_pred             CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCC
Q 018045          267 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE  346 (361)
Q Consensus       267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~  346 (361)
                      +.+++++|+||++||+.|+.+.|.++++++.+.+ ++.++.+|++++ ++++ ++++|.++|++++|++|+. ...+.| 
T Consensus        11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~-~~l~-~~~~v~~vPt~~i~~~g~~-v~~~~g-   85 (97)
T cd02949          11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDED-QEIA-EAAGIMGTPTVQFFKDKEL-VKEISG-   85 (97)
T ss_pred             hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHH-HHCCCeeccEEEEEECCeE-EEEEeC-
Confidence            4789999999999999999999999999999986 799999999999 9999 9999999999999998863 445555 


Q ss_pred             CCCHHHHHHHHH
Q 018045          347 RRDVDSLMAFVD  358 (361)
Q Consensus       347 ~~~~~~l~~~i~  358 (361)
                      ..+.++|.++|+
T Consensus        86 ~~~~~~~~~~l~   97 (97)
T cd02949          86 VKMKSEYREFIE   97 (97)
T ss_pred             CccHHHHHHhhC
Confidence            788899998874

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PTZ00051 thioredoxin; Provisional

Probab=99.66  E-value=6.9e-16  Score=117.74  Aligned_cols=94  Identities=22%  Similarity=0.323  Sum_probs=78.4

Q ss_pred             ceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |.+++ .++|++++.   .+++++|+||++||++|+.+.|.++++++.+.+  +.|+.||++++ ..++ ++|+|.++||
T Consensus         2 v~~i~~~~~~~~~~~---~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~Pt   74 (98)
T PTZ00051          2 VHIVTSQAEFESTLS---QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVDEL-SEVA-EKENITSMPT   74 (98)
T ss_pred             eEEecCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECcch-HHHH-HHCCCceeeE
Confidence            34454 456777775   889999999999999999999999999998764  99999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLM  354 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~  354 (361)
                      +++|++|+. ...+.|  ...++|.
T Consensus        75 ~~~~~~g~~-~~~~~G--~~~~~~~   96 (98)
T PTZ00051         75 FKVFKNGSV-VDTLLG--ANDEALK   96 (98)
T ss_pred             EEEEeCCeE-EEEEeC--CCHHHhh
Confidence            999999874 344554  4566654

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.65  E-value=1.1e-15  Score=149.31  Aligned_cols=105  Identities=27%  Similarity=0.589  Sum_probs=94.5

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      .|.+|+.++|+++++   ++++++|+|||+||++|+.+.|.+.++++.+.+.  ++.|+.|||+.+ .++| ++|+|.++
T Consensus         2 ~v~~l~~~~~~~~i~---~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~i~~~   76 (462)
T TIGR01130         2 DVLVLTKDNFDDFIK---SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLA-QKYGVSGY   76 (462)
T ss_pred             CceECCHHHHHHHHh---cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHH-HhCCCccc
Confidence            578999999999887   7889999999999999999999999999998752  599999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+.....|.| .++.++|.+|++++
T Consensus        77 Pt~~~~~~g~~~~~~~~g-~~~~~~l~~~i~~~  108 (462)
T TIGR01130        77 PTLKIFRNGEDSVSDYNG-PRDADGIVKYMKKQ  108 (462)
T ss_pred             cEEEEEeCCccceeEecC-CCCHHHHHHHHHHh
Confidence            999999988842467777 68999999999864

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=99.65  E-value=1.8e-15  Score=148.36  Aligned_cols=108  Identities=26%  Similarity=0.544  Sum_probs=96.4

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ...|..|+.++|++.+.  +++++++|.|||+||++|+.+.|.|+++++.+++ ..+.++.+|++.+ ..++ +++++++
T Consensus       356 ~~~v~~l~~~~f~~~v~--~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-~~~~-~~~~v~~  431 (477)
T PTZ00102        356 DGPVKVVVGNTFEEIVF--KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-ETPL-EEFSWSA  431 (477)
T ss_pred             CCCeEEecccchHHHHh--cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-ccch-hcCCCcc
Confidence            45799999999999753  4789999999999999999999999999999876 3699999999999 8888 8999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|++.+..+.| .++.++|.+||++.
T Consensus       432 ~Pt~~~~~~~~~~~~~~~G-~~~~~~l~~~i~~~  464 (477)
T PTZ00102        432 FPTILFVKAGERTPIPYEG-ERTVEGFKEFVNKH  464 (477)
T ss_pred             cCeEEEEECCCcceeEecC-cCCHHHHHHHHHHc
Confidence            9999999998865678887 79999999999864

>PTZ00102 disulphide isomerase; Provisional

Probab=99.65  E-value=1.4e-15  Score=149.20  Aligned_cols=104  Identities=27%  Similarity=0.597  Sum_probs=94.7

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..+..|+.++|+++++   +++.++|.|||+||++|+.+.|.|+++++.++.  .++.|+.|||+.+ .++| ++|+|.+
T Consensus        32 ~~v~~l~~~~f~~~i~---~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-~~l~-~~~~i~~  106 (477)
T PTZ00102         32 EHVTVLTDSTFDKFIT---ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-MELA-QEFGVRG  106 (477)
T ss_pred             CCcEEcchhhHHHHHh---cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-HHHH-HhcCCCc
Confidence            4689999999999887   788999999999999999999999999988864  3699999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+  .+.|.| .++.+.|.+|++++
T Consensus       107 ~Pt~~~~~~g~--~~~y~g-~~~~~~l~~~l~~~  137 (477)
T PTZ00102        107 YPTIKFFNKGN--PVNYSG-GRTADGIVSWIKKL  137 (477)
T ss_pred             ccEEEEEECCc--eEEecC-CCCHHHHHHHHHHh
Confidence            99999999997  458887 69999999999875

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=99.65  E-value=4.1e-16  Score=135.79  Aligned_cols=101  Identities=26%  Similarity=0.523  Sum_probs=91.9

Q ss_pred             cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC----CCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      ++..|++.++.   .+..|+|.|||+||+.++.++|+|++.|+.++.    ..+.+++|||+++ .+++ .+|.|..|||
T Consensus         1 lt~~N~~~il~---s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-~~ia-~ky~I~KyPT   75 (375)
T KOG0912|consen    1 LTSENIDSILD---SNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-DDIA-DKYHINKYPT   75 (375)
T ss_pred             CccccHHHhhc---cceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-hHHh-hhhccccCce
Confidence            46678888887   899999999999999999999999999998865    3799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +.+|.+|......|.| .++++.|.+||++.
T Consensus        76 lKvfrnG~~~~rEYRg-~RsVeaL~efi~kq  105 (375)
T KOG0912|consen   76 LKVFRNGEMMKREYRG-QRSVEALIEFIEKQ  105 (375)
T ss_pred             eeeeeccchhhhhhcc-chhHHHHHHHHHHH
Confidence            9999999976668888 79999999999864

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.64  E-value=2.1e-15  Score=119.33  Aligned_cols=101  Identities=8%  Similarity=0.148  Sum_probs=79.7

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------hHHHH
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------KEYAK  319 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------~~l~~  319 (361)
                      .+..++.++|.+.++   +++.++|+|+++|||+|+.+.|.++++++..   ++.|..||++.+.          .++. 
T Consensus         7 ~~~~it~~~~~~~i~---~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~-   79 (122)
T TIGR01295         7 GLEVTTVVRALEALD---KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFR-   79 (122)
T ss_pred             cceecCHHHHHHHHH---cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHH-
Confidence            456778788888776   8889999999999999999999999999983   4678888888541          2455 


Q ss_pred             HcCC----CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          320 QKLQ----LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       320 ~~~~----v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      ++|+    |.++||+++|++|+. .....|+..+.++|.+|+.
T Consensus        80 ~~~~i~~~i~~~PT~v~~k~Gk~-v~~~~G~~~~~~~l~~~~~  121 (122)
T TIGR01295        80 SRFGIPTSFMGTPTFVHITDGKQ-VSVRCGSSTTAQELQDIAA  121 (122)
T ss_pred             HHcCCcccCCCCCEEEEEeCCeE-EEEEeCCCCCHHHHHHHhh
Confidence            5555    556999999999985 3344454678999999874

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.64  E-value=2.1e-15  Score=118.03  Aligned_cols=88  Identities=20%  Similarity=0.340  Sum_probs=76.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCC-eeecCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSK-PIKYPSE  346 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~-~~~~~~~  346 (361)
                      .+..++|.||++||++|+.+.|.++++++.+ + .+.|..||++++ ++++ ++|+|.++||+++|++|+.. .+.+.| 
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d~~-~~l~-~~~~v~~vPt~~i~~~g~~~~~~~~~G-   95 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFDED-KEKA-EKYGVERVPTTIFLQDGGKDGGIRYYG-   95 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCCcC-HHHH-HHcCCCcCCEEEEEeCCeecceEEEEe-
Confidence            6778999999999999999999999999887 4 599999999999 9999 99999999999999886532 345666 


Q ss_pred             CCCHHHHHHHHHHh
Q 018045          347 RRDVDSLMAFVDAL  360 (361)
Q Consensus       347 ~~~~~~l~~~i~~~  360 (361)
                      ..+..+|.+||+.+
T Consensus        96 ~~~~~el~~~i~~i  109 (113)
T cd02975          96 LPAGYEFASLIEDI  109 (113)
T ss_pred             cCchHHHHHHHHHH
Confidence            67788999999875

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain

Probab=99.63  E-value=1.9e-15  Score=129.76  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=107.4

Q ss_pred             cEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~--pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +|+|++|||+||+++ +++.+.    +.++.++++|+|...  ++..+.++++++.+|+++.++.-......   ...+ 
T Consensus         1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~g~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~---~~~~-   76 (189)
T TIGR02432         1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDHGLRPESDEEAEFVQQFCKKLNIPLEIKKVDVKALA---KGKK-   76 (189)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChhHHHHHHHHHHHHHHcCCCEEEEEecchhhc---cccC-
Confidence            589999999999877 777663    557899999999753  66789999999999999887754322110   1111 


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCC-----CCcCCcCCCCCeEEEeeCcc
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP-----VFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~-----~~~~~~~~~~~~~~~~Pi~~  156 (361)
                           ......|...+..-+.++.+  +++.+++|++++|.. .+..+.......     .........++...++||.+
T Consensus        77 -----~~~~~~~r~~R~~~l~~~a~~~g~~~i~~Gh~~~D~~-e~~l~~~~~g~~~~~l~~~~~~~~~~~~~~iirPL~~  150 (189)
T TIGR02432        77 -----KNLEEAAREARYDFFEEIAKKHGADYILTAHHADDQA-ETILLRLLRGSGLRGLSGMKPIRILGNGGQIIRPLLG  150 (189)
T ss_pred             -----CCHHHHHHHHHHHHHHHHHHHcCCCEEEEcCccHHHH-HHHHHHHHcCCCcccccCCccccccCCCCEEECCCCC
Confidence                 12334467777777777766  577999999999974 432222111110     00000000114668999999


Q ss_pred             CcHHHHHHHHHhCCCCCCccc
Q 018045          157 VKGNDIWNFLRTMDVPINSLH  177 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp~~~lY  177 (361)
                      |+++||++|++.++||+..-+
T Consensus       151 ~~k~ei~~~~~~~~lp~~~~~  171 (189)
T TIGR02432       151 ISKSEIEEYLKENGLPWFEDE  171 (189)
T ss_pred             CCHHHHHHHHHHcCCCeeeCC
Confidence            999999999999999987665

The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=99.63  E-value=1.5e-15  Score=129.89  Aligned_cols=160  Identities=17%  Similarity=0.198  Sum_probs=105.2

Q ss_pred             cEEEEecchHHHHHH-HHHHHc------CCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045           11 DIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~------~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      +|+|++|||+||+++ +++.+.      +.++.++|+|+|..  .++..++++++++++|++++++......  ......
T Consensus         1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~   78 (185)
T cd01993           1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEVVERLAEELGIELEIVSFKEEY--TDDIEV   78 (185)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECCCCCCcHHHHHHHHHHHHHcCCceEEEehhhhc--chhhhh
Confidence            589999999999877 777664      33678899999975  3788999999999999999887654211  000000


Q ss_pred             CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceec------CCCCcCCcCCCCCeEEEee
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV------DPVFEGLEGGVGSLVKWNP  153 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~------~~~~~~~~~~~~~~~~~~P  153 (361)
                      ..  .........|...+...+.+..+  +.+++++|++++|.. ....+.....      .+... .....++...++|
T Consensus        79 ~~--~~~~~~~~~c~~~r~~~l~~~a~~~g~~~l~~Gh~~dD~~-et~l~~~~~g~~~~~~~~~~~-~~~~~~~~~iirP  154 (185)
T cd01993          79 KK--RGGKSPCSLCGVLRRGLLNKIAKELGADKLATGHNLDDEA-ETLLMNLLRGGILRLMRPGPI-LYLDEGDVTRIRP  154 (185)
T ss_pred             hc--cCCCCCCCccHHHHHHHHHHHHHHcCCCEEEEcCChHHHH-HHHHHHHHhcCHHHHcCCCCc-cccCCCCceEEee
Confidence            00  01112334466666667766665  567999999999964 3221111100      00000 0001134567899


Q ss_pred             CccCcHHHHHHHHHhCCCCCCcc
Q 018045          154 VANVKGNDIWNFLRTMDVPINSL  176 (361)
Q Consensus       154 i~~W~~~dv~~yi~~~~lp~~~l  176 (361)
                      |.+|++.||++|++.++||+.+-
T Consensus       155 L~~~~k~eI~~~~~~~~l~~~~d  177 (185)
T cd01993         155 LVYVREKEIVLYAELNGLPFVEE  177 (185)
T ss_pred             cccCCHHHHHHHHHHcCCCcccC
Confidence            99999999999999999988554

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.62  E-value=2.6e-15  Score=127.96  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=85.1

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+++..+|...+...+.+.+|||+||++||++|+.|.|.|+++|+.|..  +.|++||++..    . .+|+|.++|
T Consensus        82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad~~----~-~~~~i~~lP  154 (192)
T cd02988          82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIISTQC----I-PNYPDKNLP  154 (192)
T ss_pred             CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhHHh----H-hhCCCCCCC
Confidence            5689999999987665333456899999999999999999999999999965  99999999754    5 689999999


Q ss_pred             eEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045          329 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       329 t~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~  359 (361)
                      |+++|++|+..     .....|...+.++|..+|.+
T Consensus       155 Tlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~  190 (192)
T cd02988         155 TILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ  190 (192)
T ss_pred             EEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence            99999999852     11222336789999988865

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.60  E-value=1.4e-15  Score=132.23  Aligned_cols=89  Identities=30%  Similarity=0.651  Sum_probs=82.0

Q ss_pred             CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecC
Q 018045          267 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYP  344 (361)
Q Consensus       267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~  344 (361)
                      +.+..|+|.||||||.+|+++.|+|.++.-.+++  ..++++++||+.. +.++ .+|+|++|||+.+|+++.  .+.|.
T Consensus        41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-~aiA-nefgiqGYPTIk~~kgd~--a~dYR  116 (468)
T KOG4277|consen   41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-PAIA-NEFGIQGYPTIKFFKGDH--AIDYR  116 (468)
T ss_pred             ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-hhhH-hhhccCCCceEEEecCCe--eeecC
Confidence            3688999999999999999999999999998887  3799999999999 9999 999999999999999988  89999


Q ss_pred             CCCCCHHHHHHHHHHh
Q 018045          345 SERRDVDSLMAFVDAL  360 (361)
Q Consensus       345 ~~~~~~~~l~~~i~~~  360 (361)
                      | .++.+.|++|..+.
T Consensus       117 G-~R~Kd~iieFAhR~  131 (468)
T KOG4277|consen  117 G-GREKDAIIEFAHRC  131 (468)
T ss_pred             C-CccHHHHHHHHHhc
Confidence            8 59999999998653

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=3.4e-15  Score=126.77  Aligned_cols=102  Identities=20%  Similarity=0.313  Sum_probs=85.6

Q ss_pred             ceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |+.++ +.+|+.-+. ....+.++|+|+|+||+||+...|.|+.++.+|++  ..|++||+|+. +..+ ..++|...||
T Consensus         3 Vi~v~~d~df~~~ls-~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd~c-~~ta-a~~gV~amPT   77 (288)
T KOG0908|consen    3 VIVVNSDSDFQRELS-AAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVDEC-RGTA-ATNGVNAMPT   77 (288)
T ss_pred             eEEecCcHHHHHhhh-ccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHHHh-hchh-hhcCcccCce
Confidence            45554 456777554 33467999999999999999999999999999976  89999999999 8989 8999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|.+|.+ ...+.|  .++.-|++.+.++
T Consensus        78 Fiff~ng~k-id~~qG--Ad~~gLe~kv~~~  105 (288)
T KOG0908|consen   78 FIFFRNGVK-IDQIQG--ADASGLEEKVAKY  105 (288)
T ss_pred             EEEEecCeE-eeeecC--CCHHHHHHHHHHH
Confidence            999999985 555665  6788888887654

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.59  E-value=1.3e-14  Score=115.99  Aligned_cols=91  Identities=22%  Similarity=0.487  Sum_probs=74.8

Q ss_pred             CCC-CcEEEEEECCCChhHHhhHHHHH---HHHHHhcCCCeEEEEEEcCCC------------chHHHHHcCCCCCCCeE
Q 018045          267 HRQ-EPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       267 ~~~-~~vlv~F~a~wC~~C~~~~p~~~---~la~~~~~~~v~~~~vd~~~~------------~~~l~~~~~~v~~~Pt~  330 (361)
                      +++ ++++|.|||+||++|+.+.|.+.   .+.+.+++ ++.++.||++.+            ..+++ .+|+|.++||+
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~l~-~~~~v~~~Pt~   88 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDGDKEVTDFDGEALSEKELA-RKYRVRFTPTV   88 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccCCceeeccCCCCccHHHHH-HHcCCccccEE
Confidence            378 99999999999999999999885   67677765 789999999863            26888 89999999999


Q ss_pred             EEEeCC-CCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKH-SSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g-~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+++ ++......| ..+.+.+.++|+.+
T Consensus        89 ~~~~~~gg~~~~~~~G-~~~~~~~~~~l~~~  118 (125)
T cd02951          89 IFLDPEGGKEIARLPG-YLPPDEFLAYLEYV  118 (125)
T ss_pred             EEEcCCCCceeEEecC-CCCHHHHHHHHHHH
Confidence            999875 443445555 78889999998875

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.59  E-value=9.9e-15  Score=113.97  Aligned_cols=96  Identities=16%  Similarity=0.278  Sum_probs=75.7

Q ss_pred             cccHHHHHhhcCCCCcEEEEEEC-------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------chHHHHHcC
Q 018045          256 RTGMENLARLDHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------QKEYAKQKL  322 (361)
Q Consensus       256 ~~~f~~~~~~~~~~~~vlv~F~a-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------~~~l~~~~~  322 (361)
                      .++|.+.+. ..++++++|.|||       +||++|+.+.|.++++++.+++ ++.|++||+++.      +.++. .++
T Consensus         9 ~~~f~~~i~-~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd~~~~w~d~~~~~~-~~~   85 (119)
T cd02952           9 YEEFLKLLK-SHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVGDRPYWRDPNNPFR-TDP   85 (119)
T ss_pred             HHHHHHHHH-hcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcCCcccccCcchhhH-hcc
Confidence            355666654 1237899999999       9999999999999999999986 699999999763      15888 899


Q ss_pred             CCC-CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          323 QLG-SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       323 ~v~-~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      +|. ++||+++|++|++ .+...  =.+.+.+..|+
T Consensus        86 ~I~~~iPT~~~~~~~~~-l~~~~--c~~~~~~~~~~  118 (119)
T cd02952          86 KLTTGVPTLLRWKTPQR-LVEDE--CLQADLVEMFF  118 (119)
T ss_pred             CcccCCCEEEEEcCCce-ecchh--hcCHHHHHHhh
Confidence            998 9999999987763 33333  25677776665

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.57  E-value=2.5e-14  Score=107.09  Aligned_cols=92  Identities=29%  Similarity=0.503  Sum_probs=79.2

Q ss_pred             cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCC
Q 018045          258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      +|++.++   .+++++|.||++||++|+.+.+.++++++. .+ ++.|+.+|++.+ .+++ ++|++.++|++++|.+|+
T Consensus         2 ~~~~~~~---~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~-~~~~~~i~~~~~-~~~~-~~~~v~~~P~~~~~~~g~   74 (93)
T cd02947           2 EFEELIK---SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YP-KVKFVKVDVDEN-PELA-EEYGVRSIPTFLFFKNGK   74 (93)
T ss_pred             chHHHHh---cCCcEEEEEECCCChhHHHhhHHHHHHHHH-CC-CceEEEEECCCC-hhHH-HhcCcccccEEEEEECCE
Confidence            5676665   569999999999999999999999999988 33 699999999998 8999 999999999999999887


Q ss_pred             CCeeecCCCCCCHHHHHHHHH
Q 018045          338 SKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      . ...+.| ..+.++|.++|+
T Consensus        75 ~-~~~~~g-~~~~~~l~~~i~   93 (93)
T cd02947          75 E-VDRVVG-ADPKEELEEFLE   93 (93)
T ss_pred             E-EEEEec-CCCHHHHHHHhC
Confidence            4 445555 577899998873

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.56  E-value=3.3e-14  Score=109.46  Aligned_cols=88  Identities=22%  Similarity=0.282  Sum_probs=79.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC--CCCeEEEEeC--CCCCeeec
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--SFPTILFFPK--HSSKPIKY  343 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~--~~Pt~~~~~~--g~~~~~~~  343 (361)
                      .++++++.|+++||++|+.+.|.++++|+++++ .+.|+.||++++ ..++ +.|+|.  ++|+++++++  |+  ...+
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~-~v~f~~vd~~~~-~~~~-~~~~i~~~~~P~~~~~~~~~~~--k~~~   85 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG-KLLFVVVDADDF-GRHL-EYFGLKEEDLPVIAIINLSDGK--KYLM   85 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC-eEEEEEEchHhh-HHHH-HHcCCChhhCCEEEEEeccccc--ccCC
Confidence            368999999999999999999999999999998 899999999999 8999 999999  9999999988  54  4556


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 018045          344 PSERRDVDSLMAFVDAL  360 (361)
Q Consensus       344 ~~~~~~~~~l~~~i~~~  360 (361)
                      .++..+.++|.+||+++
T Consensus        86 ~~~~~~~~~l~~fi~~~  102 (103)
T cd02982          86 PEEELTAESLEEFVEDF  102 (103)
T ss_pred             CccccCHHHHHHHHHhh
Confidence            55556999999999876

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.53  E-value=7.2e-14  Score=136.43  Aligned_cols=106  Identities=25%  Similarity=0.562  Sum_probs=93.1

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-C-CeEEEEEEcCCCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-N-GVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~-~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      ...|..|+.++|++++.  +.+++++|.|||+||++|+.+.|.++++++.+++ . .+.|+++|++.+  ++. . ++|.
T Consensus       345 ~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n--~~~-~-~~i~  418 (462)
T TIGR01130       345 EGPVKVLVGKNFDEIVL--DETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN--DVP-P-FEVE  418 (462)
T ss_pred             CCccEEeeCcCHHHHhc--cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC--ccC-C-CCcc
Confidence            35788999999999874  4689999999999999999999999999999987 3 799999999987  566 5 9999


Q ss_pred             CCCeEEEEeCCCC-CeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~-~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|++|+. .+..+.| ..+.++|.+||++.
T Consensus       419 ~~Pt~~~~~~~~~~~~~~~~g-~~~~~~l~~~l~~~  453 (462)
T TIGR01130       419 GFPTIKFVPAGKKSEPVPYDG-DRTLEDFSKFIAKH  453 (462)
T ss_pred             ccCEEEEEeCCCCcCceEecC-cCCHHHHHHHHHhc
Confidence            9999999998876 3678887 69999999999864

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional

Probab=99.50  E-value=1.9e-13  Score=122.79  Aligned_cols=163  Identities=18%  Similarity=0.246  Sum_probs=104.2

Q ss_pred             HHHhHh-----CCcEEEEecchHHHHHH-HHHHHc------CCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcC
Q 018045            3 RALEKF-----GNDIAIAFSGAEDVALI-EYAHLT------GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFP   69 (361)
Q Consensus         3 ~~~~~~-----~~~i~vs~SGGKDS~~l-~l~~~~------~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p   69 (361)
                      .++++|     +++|+|++|||+||++| |++.+.      +.++.++++|+|.. +++  ++++++++++|+++.++..
T Consensus        18 ~~i~~~~li~~~~kilVa~SGG~DS~~LL~ll~~l~~~~~~~~~l~av~vd~g~~~~~~--~~~~~~~~~lgI~~~v~~~   95 (258)
T PRK10696         18 QAIADFNMIEEGDRVMVCLSGGKDSYTLLDILLNLQKRAPINFELVAVNLDQKQPGFPE--HVLPEYLESLGVPYHIEEQ   95 (258)
T ss_pred             HHHHHcCCCCCCCEEEEEecCCHHHHHHHHHHHHHHHhCCCCeEEEEEEecCCCCCCCH--HHHHHHHHHhCCCEEEEEe
Confidence            455555     47899999999999877 777552      23578899999953 333  4689999999999988764


Q ss_pred             ChHHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCC--CCcCC-cCC
Q 018045           70 DAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP--VFEGL-EGG  144 (361)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~--~~~~~-~~~  144 (361)
                      +....   .... .+  .....+.-|...+...+.++.+  +.+.+++|+.+||.. ....+..+....  ..... ...
T Consensus        96 ~~~~~---~~~~-~~--~~~~~c~~c~~~R~~~l~~~a~~~g~~~Ia~GH~~dD~~-Et~l~nl~rg~~l~~m~~~~~~~  168 (258)
T PRK10696         96 DTYSI---VKEK-IP--EGKTTCSLCSRLRRGILYRTARELGATKIALGHHRDDIL-ETLFLNMFYGGKLKAMPPKLLSD  168 (258)
T ss_pred             cchhh---hhhh-hc--cCCChhHHHHHHHHHHHHHHHHHcCCCEEEEcCchHHHH-HHHHHHHHhCCcccccCCeeecC
Confidence            42211   0000 00  0012233367777777777766  678999999999964 321111110000  00000 001


Q ss_pred             CCCeEEEeeCccCcHHHHHHHHHhCCCCCC
Q 018045          145 VGSLVKWNPVANVKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       145 ~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~  174 (361)
                      .+++..++||++++++||..|...++||+.
T Consensus       169 ~~~i~iiRPLl~~~k~eI~~y~~~~~lp~~  198 (258)
T PRK10696        169 DGKHIVIRPLAYVAEKDIIKFAEAKEFPII  198 (258)
T ss_pred             CCceeEEecCccCCHHHHHHHHHHcCCCEe
Confidence            134568999999999999999999999874

>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]

Probab=99.48  E-value=2.1e-13  Score=116.91  Aligned_cols=147  Identities=18%  Similarity=0.299  Sum_probs=107.5

Q ss_pred             HHHhHhCCcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            3 RALEKFGNDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         3 ~~~~~~~~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      .+++.. .+++||||||.||++| .++.+ +|.++.++++|+.+-++..++-+..+++++|++..++...... .++.  
T Consensus        12 ~~ik~~-~kv~vAfSGGvDSslLa~la~~~lG~~v~AvTv~sP~~p~~e~e~A~~~A~~iGi~H~~i~~~~~~-~~~~--   87 (269)
T COG1606          12 KAIKEK-KKVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIEEAKNIAKEIGIRHEFIKMNRMD-PEFK--   87 (269)
T ss_pred             HHHhhc-CeEEEEecCCccHHHHHHHHHHHhccceEEEEEecCCCChhhhhHHHHHHHHhCCcceeeehhhcc-hhhc--
Confidence            445554 4899999999999888 67755 6889999999999999989999999999999999887443221 1111  


Q ss_pred             cCCCCCCccchhchhhccccHHHH----HHHc-cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLR----RALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~----~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                              .++..-|+.+|...+.    .+.+ |+++++.|++++|....|....+.....             -..|++
T Consensus        88 --------~n~~~rCY~CK~~v~~~l~~~a~~~Gyd~V~dGtNasDl~~~RPG~rA~kE~g-------------i~sPl~  146 (269)
T COG1606          88 --------ENPENRCYLCKRAVYSTLVEEAEKRGYDVVADGTNASDLFDYRPGLRALKELG-------------IRSPLA  146 (269)
T ss_pred             --------cCCCCcchHHHHHHHHHHHHHHHHcCCCEEEeCCcHHHhcCCCcchhhHHhcC-------------CCChHH
Confidence                    1222345555544333    2332 7999999999999976777666543321             245777


Q ss_pred             c--CcHHHHHHHHHhCCCCCC
Q 018045          156 N--VKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       156 ~--W~~~dv~~yi~~~~lp~~  174 (361)
                      +  .+.++|..+.+..|+++.
T Consensus       147 e~gitk~eIre~a~~lgl~~~  167 (269)
T COG1606         147 EFGITKKEIREIAKSLGLPTW  167 (269)
T ss_pred             HhCCcHHHHHHHHHHcCCCcc
Confidence            5  599999999999999887

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]

Probab=99.48  E-value=5.8e-14  Score=119.62  Aligned_cols=152  Identities=18%  Similarity=0.277  Sum_probs=94.6

Q ss_pred             cEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +|+||+||||||++| +++.+.    +.++.++++|.|..  ..+-.++++++++.+|+++.+...+.       ..   
T Consensus         1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~~s~~~~~~v~~~~~~~~i~~~~~~~~~-------~~---   70 (182)
T PF01171_consen    1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLREESDEEAEFVEEICEQLGIPLYIVRIDE-------DR---   70 (182)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSCCHHHHHHHHHHHHHHTT-EEEEEE--C-------HC---
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccchhHHHHHHHHHhcCCceEEEEeee-------ee---
Confidence            589999999999877 777664    44788999999964  33566899999999999998875543       11   


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCC--CcCC--cCCCCCeEEEeeCccC
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV--FEGL--EGGVGSLVKWNPVANV  157 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~--~~~~--~~~~~~~~~~~Pi~~W  157 (361)
                        ........||+..+..-+.+...  +.+.+++|+.+||-. .-..+........  ..+.  .....++..++||++.
T Consensus        71 --~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~dD~~-ET~l~~l~rg~~~~~l~~~~~~~~~~~~~~iRPLl~~  147 (182)
T PF01171_consen   71 --KKGSNIEECARELRYQFLREIAKEEGCNKIALGHHLDDQA-ETFLMNLLRGSGLRGLAGMPPVSPFKGIKLIRPLLYV  147 (182)
T ss_dssp             --CTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BHHHHH-HHHHHHHHHT--CCCCC-S-SEEEETTCEEE-GGGCS
T ss_pred             --cccCCHHHHHHHHHHHHHHHhhhcccccceeecCcCCccH-HHHHHHHHHhccchhhccccccccccCcccCCcchhC
Confidence              11224556777777677777776  557999999999964 3332322221110  0000  0001346789999999


Q ss_pred             cHHHHHHHHHhCCCCCCc
Q 018045          158 KGNDIWNFLRTMDVPINS  175 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~  175 (361)
                      +++||..|...++||+..
T Consensus       148 ~k~ei~~~~~~~~i~~~~  165 (182)
T PF01171_consen  148 SKDEIRAYAKENGIPYVE  165 (182)
T ss_dssp             -HHHHHHHHHHTT-SSBS
T ss_pred             CHHHHHHHHHHCCCcEEE
Confidence            999999999999999854

The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.47  E-value=5.2e-13  Score=98.17  Aligned_cols=80  Identities=15%  Similarity=0.316  Sum_probs=70.3

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHH
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD  351 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~  351 (361)
                      .+..||++||++|+.+.|.++++++.++. .+.+..||++++ ++++ ++|++.++||+++  +|+   ..+.| ..+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~vPt~~~--~g~---~~~~G-~~~~~   72 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN-PQKA-MEYGIMAVPAIVI--NGD---VEFIG-APTKE   72 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC-HHHH-HHcCCccCCEEEE--CCE---EEEec-CCCHH
Confidence            47799999999999999999999999976 699999999999 9999 8999999999986  565   35556 67899


Q ss_pred             HHHHHHHHh
Q 018045          352 SLMAFVDAL  360 (361)
Q Consensus       352 ~l~~~i~~~  360 (361)
                      +|.++|+++
T Consensus        73 ~l~~~l~~~   81 (82)
T TIGR00411        73 ELVEAIKKR   81 (82)
T ss_pred             HHHHHHHhh
Confidence            999999875

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.44  E-value=2.7e-13  Score=106.55  Aligned_cols=98  Identities=14%  Similarity=0.323  Sum_probs=67.3

Q ss_pred             cHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC--CCeEEEEe
Q 018045          258 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS--FPTILFFP  334 (361)
Q Consensus       258 ~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~--~Pt~~~~~  334 (361)
                      ++++.++. ..+++++||.|||+||++|+.|.|.+.+....... ...|+.||++.+...+. ..|++.+  +||+++|+
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~~~~-~~~~~~g~~vPt~~f~~   84 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEEPKD-EEFSPDGGYIPRILFLD   84 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCCchh-hhcccCCCccceEEEEC
Confidence            34444432 23689999999999999999999999998776544 45666677776622455 6889986  99999996


Q ss_pred             -CCCCCe--eecCCCCCCHHHHHHHHH
Q 018045          335 -KHSSKP--IKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       335 -~g~~~~--~~~~~~~~~~~~l~~~i~  358 (361)
                       +|+...  ....| ..+.+.+..+|+
T Consensus        85 ~~Gk~~~~~~~~~~-~~~~~~f~~~~~  110 (117)
T cd02959          85 PSGDVHPEIINKKG-NPNYKYFYSSAA  110 (117)
T ss_pred             CCCCCchhhccCCC-CccccccCCCHH
Confidence             776432  23333 355555544444

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>TIGR00268 conserved hypothetical protein TIGR00268

Probab=99.44  E-value=1.6e-12  Score=116.41  Aligned_cols=148  Identities=18%  Similarity=0.294  Sum_probs=102.0

Q ss_pred             HHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            2 DRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         2 ~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      +..++.+ ++++|+||||.||+++ +++.+.+.++.++++|.+...++..+.++++++++|++++++.-+.. ... ...
T Consensus         6 ~~~l~~~-~~vlVa~SGGvDSs~ll~la~~~g~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~ii~~~~~-~~~-~~~   82 (252)
T TIGR00268         6 RNFLKEF-KKVLIAYSGGVDSSLLAAVCSDAGTEVLAITVVSPSISPRELEDAIIIAKEIGVNHEFVKIDKM-INP-FRA   82 (252)
T ss_pred             HHHHHhc-CCEEEEecCcHHHHHHHHHHHHhCCCEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcHHH-HHH-HHh
Confidence            4455665 5899999999999877 88888888899999999877778889999999999999988754321 111 111


Q ss_pred             cCCCCCCccchhchhhccccHHH---HHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl---~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      .        .. .-|..+|...+   .+..+  +.+++++|+.++|-...|..+......           +  -.+|+.
T Consensus        83 n--------~~-~~c~~ck~~~~~~l~~~A~~~g~~~I~~G~n~dD~~~~rpg~~a~~~~-----------~--~~~PL~  140 (252)
T TIGR00268        83 N--------VE-ERCYFCKKMVLSILVKEAEKRGYDVVVDGTNADDLFDHRPGYRAVKEF-----------N--GVSPWA  140 (252)
T ss_pred             C--------CC-cccchhhHHHHHHHHHHHHHcCCCEEEECCCCcccccccHHHHHHHHc-----------C--CCCcch
Confidence            1        11 12444444333   33333  567999999999864344333222111           1  138997


Q ss_pred             c--CcHHHHHHHHHhCCCCCC
Q 018045          156 N--VKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       156 ~--W~~~dv~~yi~~~~lp~~  174 (361)
                      +  ++.+||.+|.++.|||+.
T Consensus       141 ~~~l~K~eIr~la~~~gl~~~  161 (252)
T TIGR00268       141 EFGITKKEIREIAKSLGISFP  161 (252)
T ss_pred             hcCCCHHHHHHHHHHcCCCcc
Confidence            6  799999999999999864

The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=99.43  E-value=1.1e-12  Score=113.67  Aligned_cols=142  Identities=19%  Similarity=0.257  Sum_probs=100.3

Q ss_pred             EEEEecchHHHHHH-HHHHHcCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 018045           12 IAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED   89 (361)
Q Consensus        12 i~vs~SGGKDS~~l-~l~~~~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~   89 (361)
                      |+|++|||+||+++ +++.+.+. ++.++++|+|...++..++++++++++|++++++..+.... .......      .
T Consensus         1 vvva~SGG~DS~~ll~ll~~~~~~~v~~v~vd~g~~~~~~~~~~~~~a~~lgi~~~~~~~~~~~~-~~~~~~~------~   73 (202)
T cd01990           1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTATSPLFPRRELEEAKRLAKEIGIRHEVIETDELDD-PEFAKNP------P   73 (202)
T ss_pred             CEEEccCCHHHHHHHHHHHHHhCCcEEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccc-HHHhcCC------C
Confidence            58999999999877 88877543 78899999998788999999999999999998876542111 1111111      1


Q ss_pred             chhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc--cCcHHHHHHH
Q 018045           90 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA--NVKGNDIWNF  165 (361)
Q Consensus        90 ~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~--~W~~~dv~~y  165 (361)
                      .....|.......+.+..+  +.+++++|+..+|....|..+...  .           ...-++||.  .++..||.+|
T Consensus        74 ~~~~~~r~~~~~~l~~~a~~~g~~~I~~G~~~dD~~e~~~~~~~~--~-----------~~~iirPL~~~~~~K~ei~~~  140 (202)
T cd01990          74 DRCYLCKKALYEALKEIAEELGLDVVLDGTNADDLGDYRPGLKAL--R-----------ELGVRSPLAEAGLGKAEIREL  140 (202)
T ss_pred             CccchhHHHHHHHHHHHHHHCCCCEEEEcCccccCcccChHHHHH--H-----------HcCCcCchhhcCCCHHHHHHH
Confidence            2223355555666666555  567999999999864222221110  0           122589999  5999999999


Q ss_pred             HHhCCCCC
Q 018045          166 LRTMDVPI  173 (361)
Q Consensus       166 i~~~~lp~  173 (361)
                      .++.|||+
T Consensus       141 a~~~gl~~  148 (202)
T cd01990         141 ARELGLPT  148 (202)
T ss_pred             HHHcCCCC
Confidence            99999988

Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.

>PTZ00062 glutaredoxin; Provisional

Probab=99.41  E-value=1.4e-12  Score=111.54  Aligned_cols=89  Identities=6%  Similarity=0.087  Sum_probs=73.2

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      +.++|+++++  ...+.++++|+|+||++|+.|.|.+.++++++++  +.|+.||.+          |+|.++||+++|+
T Consensus         5 ~~ee~~~~i~--~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d----------~~V~~vPtfv~~~   70 (204)
T PTZ00062          5 KKEEKDKLIE--SNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA----------DANNEYGVFEFYQ   70 (204)
T ss_pred             CHHHHHHHHh--cCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc----------cCcccceEEEEEE
Confidence            4567777765  1248899999999999999999999999999965  999999855          7899999999999


Q ss_pred             CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          335 KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+. .-.+.|  .++.+|..+++++
T Consensus        71 ~g~~-i~r~~G--~~~~~~~~~~~~~   93 (204)
T PTZ00062         71 NSQL-INSLEG--CNTSTLVSFIRGW   93 (204)
T ss_pred             CCEE-EeeeeC--CCHHHHHHHHHHH
Confidence            9984 334444  6788888888764

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=6.5e-13  Score=122.28  Aligned_cols=154  Identities=15%  Similarity=0.165  Sum_probs=108.3

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC--CCceEEEccCCCCc--HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLN--PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLF   84 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~--~~i~v~~~dtg~~~--pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~   84 (361)
                      ++|+||+||||||++| +++.+..  .++.++++|.|..-  ..-.++++.+++.+|+++++.+-.......     .. 
T Consensus        22 ~~ilVavSGGkDS~~ll~~L~~l~~~~~~~a~~Vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~-   95 (298)
T COG0037          22 YKILVAVSGGKDSLALLHLLKELGRRIEVEAVHVDHGLRGYSDQEAELVEKLCEKLGIPLIVERVTDDLGRE-----TL-   95 (298)
T ss_pred             CeEEEEeCCChHHHHHHHHHHHhccCceEEEEEecCCCCCccchHHHHHHHHHHHhCCceEEEEEEeecccc-----cc-
Confidence            6999999999999877 8888876  47889999999654  677889999999999977765433221100     00 


Q ss_pred             CCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCC-----CcCCcCCCCCe-EEEeeCcc
Q 018045           85 SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV-----FEGLEGGVGSL-VKWNPVAN  156 (361)
Q Consensus        85 ~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~-----~~~~~~~~~~~-~~~~Pi~~  156 (361)
                        +..+.+.-|...+..-+.+...  |.+.++||+.+||.. .-..++....+..     ..... ...+. ..++||+.
T Consensus        96 --~~~~~c~~c~~~R~~~l~~~a~~~g~~~i~tgH~~dD~~-et~lm~l~~g~~~~~l~~~~~~~-~~~~~~~~iRPL~~  171 (298)
T COG0037          96 --DGKSICAACRRLRRGLLYKIAKELGADKIATGHHLDDQA-ETFLMNLLRGSGLRGLRGMPPKR-PFEGGLLIIRPLLY  171 (298)
T ss_pred             --CCCChhHHHHHHHHHHHHHHHHHcCCCeEEeccCcHHHH-HHHHHHHHcCcHhhHHhhCCccc-ccCCCCeeeeeccc
Confidence              0113444588888888888887  568999999999975 3333333322210     00000 11222 68999999


Q ss_pred             CcHHHHHHHHHhCCCCC
Q 018045          157 VKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp~  173 (361)
                      +++.+|..|...++||+
T Consensus       172 ~~~~ei~~~~~~~~l~~  188 (298)
T COG0037         172 VREKEIELYAKEKGLPY  188 (298)
T ss_pred             CCHHHHHHHHHHcCCCE
Confidence            99999999999999976

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.40  E-value=7.5e-13  Score=115.79  Aligned_cols=89  Identities=21%  Similarity=0.332  Sum_probs=72.3

Q ss_pred             CCcEEEEEEC---CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCC
Q 018045          269 QEPWLVVLYA---PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       269 ~~~vlv~F~a---~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~  345 (361)
                      +...++.|++   +||++|+.+.|.++++++.+.+-.+.++.+|.+++ ++++ ++|+|.++||+++|++|+.....+.|
T Consensus        19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-~~l~-~~~~V~~~Pt~~~f~~g~~~~~~~~G   96 (215)
T TIGR02187        19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-KEEA-EKYGVERVPTTIILEEGKDGGIRYTG   96 (215)
T ss_pred             CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-HHHH-HHcCCCccCEEEEEeCCeeeEEEEee
Confidence            4455666888   99999999999999999998542355677777788 9999 99999999999999999852246666


Q ss_pred             CCCCHHHHHHHHHHh
Q 018045          346 ERRDVDSLMAFVDAL  360 (361)
Q Consensus       346 ~~~~~~~l~~~i~~~  360 (361)
                       ..+.++|.+||+.+
T Consensus        97 -~~~~~~l~~~i~~~  110 (215)
T TIGR02187        97 -IPAGYEFAALIEDI  110 (215)
T ss_pred             -cCCHHHHHHHHHHH
Confidence             67888999998764

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2.7e-12  Score=122.17  Aligned_cols=101  Identities=34%  Similarity=0.691  Sum_probs=87.5

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~  331 (361)
                      ..++..+|.....  ..+++++|.||+|||++|+.+.|.|.+++..+++ .+.++.|||+.+ .++| ++|+|.++||+.
T Consensus        32 ~~~~~~~~~~~~~--~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~-~~~~-~~y~i~gfPtl~  106 (383)
T KOG0191|consen   32 SELTLDSFFDFLL--KDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEH-KDLC-EKYGIQGFPTLK  106 (383)
T ss_pred             hhhhccccHHHhh--ccCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhh-HHHH-HhcCCccCcEEE
Confidence            3344444444332  3789999999999999999999999999999998 899999999999 9999 999999999999


Q ss_pred             EEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          332 FFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +|.+| ..++.+.+ ..+.+.+.+|+.+
T Consensus       107 ~f~~~-~~~~~~~~-~~~~~~~~~~~~~  132 (383)
T KOG0191|consen  107 VFRPG-KKPIDYSG-PRNAESLAEFLIK  132 (383)
T ss_pred             EEcCC-CceeeccC-cccHHHHHHHHHH
Confidence            99999 44899988 7999999999864

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.37  E-value=3.6e-12  Score=100.68  Aligned_cols=99  Identities=16%  Similarity=0.266  Sum_probs=71.9

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHH--------cCC
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQ--------KLQ  323 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~--------~~~  323 (361)
                      +++.+++..+   ++|+++|+|+|+||++|+.|.+..   .++++.+.. ++.+++||.++. +++. +        .|+
T Consensus         4 ~~eal~~Ak~---~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~~~-~~~~-~~~~~~~~~~~~   77 (124)
T cd02955           4 GEEAFEKARR---EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDREER-PDVD-KIYMNAAQAMTG   77 (124)
T ss_pred             CHHHHHHHHH---cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCCcC-cHHH-HHHHHHHHHhcC
Confidence            4556666665   899999999999999999998743   467777765 699999999987 7665 3        368


Q ss_pred             CCCCCeEEEEeCCCCCeeecCCC-----CCCHHHHHHHHHHh
Q 018045          324 LGSFPTILFFPKHSSKPIKYPSE-----RRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~~~~~~~~-----~~~~~~l~~~i~~~  360 (361)
                      +.++|++++++..++ ++...++     ..+...+.++++++
T Consensus        78 ~~G~Pt~vfl~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (124)
T cd02955          78 QGGWPLNVFLTPDLK-PFFGGTYFPPEDRYGRPGFKTVLEKI  118 (124)
T ss_pred             CCCCCEEEEECCCCC-EEeeeeecCCCCcCCCcCHHHHHHHH
Confidence            999999999955443 3322221     13445666666654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase

Probab=99.36  E-value=1.1e-11  Score=112.54  Aligned_cols=167  Identities=14%  Similarity=0.145  Sum_probs=106.0

Q ss_pred             cEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFY   87 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~~~~~~~~~   87 (361)
                      +++|++|||+||+++ +|+.+ .+.++.++|+|+|....+-.+.++++++++|. +++++..+......   ..+... +
T Consensus         1 kVlVa~SGGVDSsvla~ll~~~lG~~v~aV~vd~g~~~~~E~~~~~~~~~~~g~i~~~vvd~~e~fl~~---l~~v~n-p   76 (295)
T cd01997           1 KVILALSGGVDSTVAAVLLHKAIGDRLTCVFVDNGLLRKNEAERVEELFSKLLGINLIVVDASERFLSA---LKGVTD-P   76 (295)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHhCCcEEEEEecCCCCChHHHHHHHHHHHHhCCCcEEEEcCcHHHHHH---hcCCCC-H
Confidence            589999999999877 78877 57789999999998666667889999999886 98887554321211   122211 1


Q ss_pred             ccchhchhhccccHHHHHHHc--c-CCEEEEeeeccCCccCccCCC---ceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           88 EDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSEIP---VVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        88 ~~~~~~cc~~~K~~pl~~~~~--~-~~~~i~G~R~~Es~~~R~~~~---~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                       ...+..|......-+.+..+  + .+.+++|+.++|-...|....   .+.......+.. .....-.+.||.+++++|
T Consensus        77 -e~rr~~~g~~~~~~l~~~A~~~g~~~~Ia~Gh~~dD~~Es~~~~~~~~~IKs~~n~~Gl~-a~~~~~vi~PL~~l~K~E  154 (295)
T cd01997          77 -EEKRKIIGETFIEVFEEEAKKLGLAEYLAQGTLYPDVIESGSGKGSADTIKSHHNVGGLP-EDMKLKLIEPLRDLFKDE  154 (295)
T ss_pred             -HHHHHHhhHHHHHHHHHHHHHcCCCCEEEECCcccchhhhcccccccccccccccccccc-hHhhCCcccccccCcHHH
Confidence             11222233344455555554  5 778999999988532232100   000000000000 001223589999999999


Q ss_pred             HHHHHHhCCCCCCccccCCCCC
Q 018045          162 IWNFLRTMDVPINSLHSQGYIS  183 (361)
Q Consensus       162 v~~yi~~~~lp~~~lY~~g~~~  183 (361)
                      |.++.++.|||..-++++-|+.
T Consensus       155 VR~lar~lGLp~~~~~~~Pfp~  176 (295)
T cd01997         155 VRELGRELGLPEEIVERHPFPG  176 (295)
T ss_pred             HHHHHHHcCCCchhhCCCCCCC
Confidence            9999999999987777775554

It contains two subdomains; the ATP pyrophosphatase domain which closes to the N-termial and the dimerization domain at C-terminal end. The ATP-PPase is a twisted, five-stranded parallel beta-sheet sandwiched between helical layers. It has a signature nucleotide-binding motif, or P-loop, at the end of the first-beta strand.The dimerization domain formed by the C-terminal 115 amino acid for prokaryotic proteins. It is adjacent to teh ATP-binding site of the ATP-PPase subdomain. The largest difference between the primary sequence of prokaryotic and eukaryotic GMP synthetase map to the dimerization domain.Eukaryotic GMP synthetase has several large insertions relative to prokaryotes.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.35  E-value=5.8e-12  Score=125.06  Aligned_cols=103  Identities=18%  Similarity=0.335  Sum_probs=81.8

Q ss_pred             CcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCC
Q 018045          255 NRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSF  327 (361)
Q Consensus       255 ~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~  327 (361)
                      +.+++++.++.. .++|+++|+|||+||++|+.+++..   .++.+.+++  +.++++|+++++   .++. ++|+|.++
T Consensus       459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~--~~~v~vDvt~~~~~~~~l~-~~~~v~g~  535 (571)
T PRK00293        459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD--TVLLQADVTANNAEDVALL-KHYNVLGL  535 (571)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC--CEEEEEECCCCChhhHHHH-HHcCCCCC
Confidence            456777766532 3578999999999999999999975   678888854  899999998642   5788 89999999


Q ss_pred             CeEEEEe-CCCCC-eeecCCCCCCHHHHHHHHHHhC
Q 018045          328 PTILFFP-KHSSK-PIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       328 Pt~~~~~-~g~~~-~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      ||+++|+ +|+.. ...+.| ..+.+++.++|++++
T Consensus       536 Pt~~~~~~~G~~i~~~r~~G-~~~~~~f~~~L~~~~  570 (571)
T PRK00293        536 PTILFFDAQGQEIPDARVTG-FMDAAAFAAHLRQLQ  570 (571)
T ss_pred             CEEEEECCCCCCcccccccC-CCCHHHHHHHHHHhc
Confidence            9999996 56632 234455 789999999999864

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.34  E-value=1.9e-11  Score=103.17  Aligned_cols=92  Identities=15%  Similarity=0.339  Sum_probs=76.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------chHHHHHcCCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~~~l~~~~~~v~~  326 (361)
                      .+++++|+||++||++|+...+.+.++++++++.++.++.|+++..                     +..++ +.|+|..
T Consensus        60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~~  138 (173)
T PRK03147         60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVI-DAYGVGP  138 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHH-HHcCCCC
Confidence            5789999999999999999999999999999875688999987643                     15677 8999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      +|+++++++++.....+.| ..+.+++.+++++++
T Consensus       139 ~P~~~lid~~g~i~~~~~g-~~~~~~l~~~l~~~~  172 (173)
T PRK03147        139 LPTTFLIDKDGKVVKVITG-EMTEEQLEEYLEKIK  172 (173)
T ss_pred             cCeEEEECCCCcEEEEEeC-CCCHHHHHHHHHHhc
Confidence            9999999655543445555 789999999999875

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=99.33  E-value=6.4e-12  Score=90.84  Aligned_cols=74  Identities=12%  Similarity=0.198  Sum_probs=59.1

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS  352 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~  352 (361)
                      .|.||++||++|+.+.|.++++++++.. .+.|+.||   + .+.+ .+|++.++||+++  +|+  .. +.|...+.++
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~-~~~~~~v~---~-~~~a-~~~~v~~vPti~i--~G~--~~-~~G~~~~~~~   70 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGI-DAEFEKVT---D-MNEI-LEAGVTATPGVAV--DGE--LV-IMGKIPSKEE   70 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCC-CeEEEEeC---C-HHHH-HHcCCCcCCEEEE--CCE--EE-EEeccCCHHH
Confidence            3789999999999999999999999976 68887777   2 4446 7899999999999  776  33 5552345678


Q ss_pred             HHHHH
Q 018045          353 LMAFV  357 (361)
Q Consensus       353 l~~~i  357 (361)
                      |.++|
T Consensus        71 l~~~l   75 (76)
T TIGR00412        71 IKEIL   75 (76)
T ss_pred             HHHHh
Confidence            87776

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway

Probab=99.33  E-value=1.5e-11  Score=104.31  Aligned_cols=149  Identities=12%  Similarity=0.106  Sum_probs=89.6

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHH-H---HHHHHHHHHHhCCcE--EEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPE-T---YRFFDEVEKHFGIRI--EYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pe-t---~~~v~~~~~~~g~~i--~~~~p~~~~~~~~~~~~~~   83 (361)
                      +++|+||||+||+++ +++.+.+.++.++|+|+|....+ .   ...+.+....++.++  .++........... ..+.
T Consensus         1 ~vlv~~SGG~DS~~la~ll~~~g~~v~av~~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~   79 (177)
T cd01712           1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREKVEDLARKLARYSPGHKLVVIIFTFFVQKEIY-GYGK   79 (177)
T ss_pred             CEEEEecCChhHHHHHHHHHHcCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHHhCCCCceEEEeCcHHHHHHHH-HhCC
Confidence            479999999999877 78888888899999999975443 1   222223335566544  45544321111111 1221


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                      +   . ++..-|......-+..+..  +.+.+++|+..+|-. .-..........        ..++..++|++++++.|
T Consensus        80 ~---~-~~c~~Cr~~~~~~~~~~A~~~g~~~I~~G~~~~D~~-~~~~~~l~~~~~--------~~~~~i~rPl~~~~K~e  146 (177)
T cd01712          80 E---K-YRCILCKRMMYRIAEKLAEELGADAIVTGESLGQVA-SQTLENLLVISS--------GTDLPILRPLIGFDKEE  146 (177)
T ss_pred             C---c-cHhHHHHHHHHHHHHHHHHHcCCCEEEEccCcccch-HHHHHhhhhccc--------CCCCeEECCCCCCCHHH
Confidence            1   1 2222243333333333333  668999999998853 212122211111        12466799999999999


Q ss_pred             HHHHHHhCCCCC
Q 018045          162 IWNFLRTMDVPI  173 (361)
Q Consensus       162 v~~yi~~~~lp~  173 (361)
                      |+.|.+++||+.
T Consensus       147 I~~~a~~~gl~~  158 (177)
T cd01712         147 IIGIARRIGTYD  158 (177)
T ss_pred             HHHHHHHcCCcc
Confidence            999999999855

It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.

>cd01995 ExsB ExsB is a transcription regulator related protein

Probab=99.32  E-value=4.7e-11  Score=100.52  Aligned_cols=140  Identities=15%  Similarity=0.232  Sum_probs=91.9

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCcc
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYED   89 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~   89 (361)
                      +++|++|||+||+++ +++.+.+.++.++++|.|....+-.++++++++.+| +...+...                   
T Consensus         1 kvlv~~SGG~DS~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~-------------------   60 (169)
T cd01995           1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFDYGQRHAKEEEAAKLIAEKLG-PSTYVPAR-------------------   60 (169)
T ss_pred             CEEEEecCcHHHHHHHHHHHHcCCcEEEEEEECCCCChhHHHHHHHHHHHHC-CCEEEeCc-------------------
Confidence            578999999999877 888888888999999998664445589999999999 32222110                   


Q ss_pred             chhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCC-C-cee-cCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045           90 GHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEI-P-VVQ-VDPVFEGLEGGVGSLVKWNPVANVKGNDIWN  164 (361)
Q Consensus        90 ~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~-~-~~~-~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~  164 (361)
                            ......-+.++..  +.+.+++|+..+|.. ..... + .++ .+... . .....++--++||++|++.||..
T Consensus        61 ------~~~~~~~l~~~a~~~g~~~i~~G~~~~d~~-~~~~~~~~~~~~~~~~~-~-~~~~~~~~v~~PL~~~~K~ei~~  131 (169)
T cd01995          61 ------NLIFLSIAAAYAEALGAEAIIIGVNAEDYS-GYPDCRPEFIEAMNKAL-N-LGTENGIKIHAPLIDLSKAEIVR  131 (169)
T ss_pred             ------CHHHHHHHHHHHHHCCCCEEEEeeccCccC-CCCCCCHHHHHHHHHHH-H-hhcCCCeEEEeCcccCCHHHHHH
Confidence                  0011122233322  678899999999852 21110 0 000 00000 0 00112455689999999999999


Q ss_pred             HHHhCCCCCCccccC
Q 018045          165 FLRTMDVPINSLHSQ  179 (361)
Q Consensus       165 yi~~~~lp~~~lY~~  179 (361)
                      ++++.|+|+..-|.+
T Consensus       132 ~~~~~g~~~~~s~sC  146 (169)
T cd01995         132 LGGELGVPLELTWSC  146 (169)
T ss_pred             HHhHcCCChhheeec
Confidence            999999999888865

It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=7.3e-12  Score=119.17  Aligned_cols=106  Identities=31%  Similarity=0.656  Sum_probs=93.7

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      .|..++..+|...+.  +.+..++|.||+|||++|+.+.|.|++++..++. ..+.++.+|++.. ..++ ++++|.++|
T Consensus       145 ~v~~l~~~~~~~~~~--~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~-~~~~-~~~~v~~~P  220 (383)
T KOG0191|consen  145 EVFELTKDNFDETVK--DSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVH-KSLA-SRLEVRGYP  220 (383)
T ss_pred             ceEEccccchhhhhh--ccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchH-HHHh-hhhcccCCc
Confidence            588999999998765  4688999999999999999999999999999973 4899999999977 8999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+.+|++|.+ ...+..+.++.+.+.+|+++.
T Consensus       221 t~~~f~~~~~-~~~~~~~~R~~~~i~~~v~~~  251 (383)
T KOG0191|consen  221 TLKLFPPGEE-DIYYYSGLRDSDSIVSFVEKK  251 (383)
T ss_pred             eEEEecCCCc-ccccccccccHHHHHHHHHhh
Confidence            9999999885 455555689999999999864

>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed

Probab=99.32  E-value=3.8e-11  Score=112.07  Aligned_cols=157  Identities=12%  Similarity=0.092  Sum_probs=105.1

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC----------cHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL----------NPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q   75 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~----------~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~   75 (361)
                      +|+|++|||+||+++ +|+.+.+.++..+|++++..          .++-.++++++++++|++++++.-.....    .
T Consensus         2 kVlValSGGvDSsvla~lL~~~G~~V~~v~~~~~~~~~~~~~~~~~s~~d~~~a~~~a~~LgIp~~vvd~~~~f~~~vi~   81 (346)
T PRK00143          2 RVVVGMSGGVDSSVAAALLKEQGYEVIGVFMKLWDDDDETGKGGCCAEEDIADARRVADKLGIPHYVVDFEKEFWDRVID   81 (346)
T ss_pred             eEEEEecCCHHHHHHHHHHHHcCCcEEEEEEeCCCcccccccCCcCcHHHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHH
Confidence            689999999999877 88888888899999998642          35678899999999999998875433211    1


Q ss_pred             HHHHh--cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceec-CC----CCcCCcCCCC
Q 018045           76 ALVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQV-DP----VFEGLEGGVG  146 (361)
Q Consensus        76 ~~~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~-~~----~~~~~~~~~~  146 (361)
                      .++..  .|..+   .....|....|..-+.++++  +.+.++||+.+++.. .+   .+... +.    .|.-..-...
T Consensus        82 ~~~~~~~~g~tp---npc~~C~r~ik~~~l~~~A~~~g~~~IATGH~a~d~~-~~---~L~rg~d~~kDqsy~l~~l~~~  154 (346)
T PRK00143         82 YFLDEYKAGRTP---NPCVLCNKEIKFKAFLEYARELGADYIATGHYARIRD-GR---ELLRGVDPNKDQSYFLYQLTQE  154 (346)
T ss_pred             HHHHHHHcCCCC---CcChhhhHHHHHHHHHHHHHHCCCCEEEeeeeccccc-cc---eEEEccCCCcChhhhhccCCHH
Confidence            12222  22211   12334455577777777776  678999999999863 22   22221 10    0100000000


Q ss_pred             -CeEEEeeCccCcHHHHHHHHHhCCCCCC
Q 018045          147 -SLVKWNPVANVKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       147 -~~~~~~Pi~~W~~~dv~~yi~~~~lp~~  174 (361)
                       -.-.++||.+++++||.+|.++++||+.
T Consensus       155 ~l~~~i~PL~~~~K~eVr~~A~~~gl~~~  183 (346)
T PRK00143        155 QLAKLLFPLGELTKPEVREIAEEAGLPVA  183 (346)
T ss_pred             HhcceeccCccCCHHHHHHHHHHcCCCcC
Confidence             1136899999999999999999999863

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.31  E-value=1.3e-11  Score=108.02  Aligned_cols=95  Identities=17%  Similarity=0.240  Sum_probs=76.2

Q ss_pred             ecCcccHHHHHhhcCCCCc-EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045          253 TLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       253 ~l~~~~f~~~~~~~~~~~~-vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~  331 (361)
                      .|+.+..+.+..   .+++ +++.||++||++|+.+.|.+++++....  ++.+..||.+.+ ++++ ++|+|.++||++
T Consensus       119 ~L~~~~~~~l~~---~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~~~-~~~~-~~~~V~~vPtl~  191 (215)
T TIGR02187       119 GLSEKTVELLQS---LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEANEN-PDLA-EKYGVMSVPKIV  191 (215)
T ss_pred             CCCHHHHHHHHh---cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCCCC-HHHH-HHhCCccCCEEE
Confidence            355555555443   3444 4555999999999999999999998853  599999999999 9999 999999999999


Q ss_pred             EEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          332 FFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++++|.  .  +.| ..+.++|.++|++
T Consensus       192 i~~~~~--~--~~G-~~~~~~l~~~l~~  214 (215)
T TIGR02187       192 INKGVE--E--FVG-AYPEEQFLEYILS  214 (215)
T ss_pred             EecCCE--E--EEC-CCCHHHHHHHHHh
Confidence            997765  2  555 6788999999875

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG2644 consensus 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=99.31  E-value=1.4e-12  Score=113.80  Aligned_cols=152  Identities=20%  Similarity=0.325  Sum_probs=108.8

Q ss_pred             cEEEEecchHHHHHH-HHHHHc-----------C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH
Q 018045           11 DIAIAFSGAEDVALI-EYAHLT-----------G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL   77 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~-----------~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~   77 (361)
                      .+..||.||||.+++ +++.+.           + -.++.+|+|.+..||+..+|+.....+|.+.+..+.-... .   
T Consensus        84 ~~a~SFnggkdc~vll~ll~~~l~~~~~~~~~~p~~~i~~~~~~~~~~fp~~~~fv~~~~~~y~~~l~~~~~~~~-l---  159 (282)
T KOG2644|consen   84 EMALSFNGGKDCTVLLLLLMRYLRDEYAEKLDQPSTAIPAVYIDVEDSFPELEDFVSVCVFKYRPQLSRLSGAGR-L---  159 (282)
T ss_pred             HHHHhhCCCCChHHHHHHHHHHhcchhhhhccCCCccccceeecCCCCcccccchHHHHHHhhccchhhccCcch-H---
Confidence            467889999998766 665551           1 1477899999999999999999999999877652211100 0   


Q ss_pred             HHhcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           78 VRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                                   ...-+...|+.|      ....++.|+|..+.. .-+.+++.-.|.       .++++++..||++|
T Consensus       160 -------------k~~~~~~~~~~~------~~k~i~vg~r~~dp~-g~~~~~~~~td~-------~wp~~~r~~pll~w  212 (282)
T KOG2644|consen  160 -------------KKALSLFKKVDP------ESKAILVGIRNTDPV-GEALAPFERTDS-------LWPQFMRLLPLLEW  212 (282)
T ss_pred             -------------HHHHHHhhhhhh------hhhhHhhhhhhCCCc-cceecceeeccC-------Cchhhhhhcccccc
Confidence                         001112222222      344678899999974 433343333332       45788999999999


Q ss_pred             cHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCC
Q 018045          158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPV  193 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~  193 (361)
                      +..|||++++..++|+|.||++||+|+|-..-|.+.
T Consensus       213 s~t~vw~~l~~~~~p~c~ly~qg~TslG~~~~t~pn  248 (282)
T KOG2644|consen  213 SYTDVWDLLREGNLPYCGLYDQGYTSLGGRSNTSPN  248 (282)
T ss_pred             hHHHHHHHHhcCCCceeeeecccccccccccCCCCC
Confidence            999999999999999999999999999987776643

>PHA02125 thioredoxin-like protein

Probab=99.30  E-value=1.5e-11  Score=88.71  Aligned_cols=72  Identities=19%  Similarity=0.374  Sum_probs=56.5

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS  352 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~  352 (361)
                      +++|||+||++|+.+.|.|+++.       +.++.||++.+ .+++ ++|+|.++||++   +|+. ...+.|...+..+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~~-~~l~-~~~~v~~~PT~~---~g~~-~~~~~G~~~~~~~   68 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDEG-VELT-AKHHIRSLPTLV---NTST-LDRFTGVPRNVAE   68 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCCC-HHHH-HHcCCceeCeEE---CCEE-EEEEeCCCCcHHH
Confidence            78999999999999999997652       56899999998 9999 999999999988   4542 2345553455566


Q ss_pred             HHHHH
Q 018045          353 LMAFV  357 (361)
Q Consensus       353 l~~~i  357 (361)
                      |.+-|
T Consensus        69 l~~~~   73 (75)
T PHA02125         69 LKEKL   73 (75)
T ss_pred             HHHHh
Confidence            66543

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=3.6e-12  Score=120.66  Aligned_cols=107  Identities=16%  Similarity=0.360  Sum_probs=84.4

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCC-chHHHHHcCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD-QKEYAKQKLQL  324 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~-~~~l~~~~~~v  324 (361)
                      +.+|.+|+.++|+..+.  .+.+-.+|.||++||++|+.+.|.|+++|+.+..  .-+.++.|||-.. +..+| ++|+|
T Consensus        38 ~D~ii~Ld~~tf~~~v~--~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lC-Ref~V  114 (606)
T KOG1731|consen   38 DDPIIELDVDTFNAAVF--GSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLC-REFSV  114 (606)
T ss_pred             CCCeEEeehhhhHHHhc--ccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhH-hhcCC
Confidence            47899999999999876  3557899999999999999999999999999876  3688999999543 27899 99999


Q ss_pred             CCCCeEEEEeCCCCC---eeecCCCCCCHHHHHHHHH
Q 018045          325 GSFPTILFFPKHSSK---PIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~---~~~~~~~~~~~~~l~~~i~  358 (361)
                      .++|++.+|+.+...   -..+.| .....++.+.+.
T Consensus       115 ~~~Ptlryf~~~~~~~~~G~~~~~-~~~~~ei~~~l~  150 (606)
T KOG1731|consen  115 SGYPTLRYFPPDSQNKTDGSDVSG-PVIPSEIRDQLI  150 (606)
T ss_pred             CCCceeeecCCccccCcCCCcccC-CcchhhHHHHHH
Confidence            999999999776421   122232 344555555554

>PRK00074 guaA GMP synthase; Reviewed

Probab=99.29  E-value=3.1e-11  Score=118.20  Aligned_cols=167  Identities=14%  Similarity=0.215  Sum_probs=106.7

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      ++++|++|||+||+++ +++.+. +.++.++|+|+|.. -+|..+.++.+++++|++++++..+.....   ...|. .-
T Consensus       216 ~~vlva~SGGvDS~vll~ll~~~lg~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vvd~~~~f~~---~l~g~-~~  291 (511)
T PRK00074        216 KKVILGLSGGVDSSVAAVLLHKAIGDQLTCVFVDHGLLRKNEAEQVMEMFREHFGLNLIHVDASDRFLS---ALAGV-TD  291 (511)
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHhCCceEEEEEeCCCCCHHHHHHHHHHHHHHcCCcEEEEccHHHHHH---hccCC-CC
Confidence            6899999999999877 777665 77899999999964 457777777788999999988754422111   11232 11


Q ss_pred             CccchhchhhccccHHHHHHHc---cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCC---CCeEEEeeCccCcHH
Q 018045           87 YEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGV---GSLVKWNPVANVKGN  160 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~---~~~~~~~Pi~~W~~~  160 (361)
                      +......||..+ ..-+.+..+   +.+.+++|+..+|....|...+.-... +..+ ..+.   ...-.+.||.+++++
T Consensus       292 ~~~~r~~~~~~~-~~~~~~~a~~~~g~~~latGhn~dD~~Et~~~~~~~~ik-~~~~-l~Gl~~~~~~~ii~PL~~l~K~  368 (511)
T PRK00074        292 PEEKRKIIGREF-IEVFEEEAKKLGGVKFLAQGTLYPDVIESGGTKKAATIK-SHHN-VGGLPEDMKLKLVEPLRELFKD  368 (511)
T ss_pred             cHHhhhhhhHHH-HHHHHHHHHHccCCCEEEECCCcchhhhhcCCCCccccc-cccC-ccCcChhHhcccccchhhcCHH
Confidence            222223344433 245555553   557899999988874233111000000 0000 0011   113468999999999


Q ss_pred             HHHHHHHhCCCCCCccccCCCCC
Q 018045          161 DIWNFLRTMDVPINSLHSQGYIS  183 (361)
Q Consensus       161 dv~~yi~~~~lp~~~lY~~g~~~  183 (361)
                      ||.+|.+++|||+.-.+++-|+.
T Consensus       369 EIr~~a~~~gLp~~~~~~~p~p~  391 (511)
T PRK00074        369 EVRKLGLELGLPEEIVYRHPFPG  391 (511)
T ss_pred             HHHHHHHHcCCCHHHhCCCCCCC
Confidence            99999999999988888775443

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.29  E-value=2.2e-11  Score=117.85  Aligned_cols=88  Identities=16%  Similarity=0.313  Sum_probs=71.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE----------------------------cCCCchHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR----------------------------ADGDQKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd----------------------------~~~~~~~l~~  319 (361)
                      +++++||+|||+||++|+.++|.++++++.++.+++.|+.|.                            +|.+ ..++ 
T Consensus        55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~-~~la-  132 (521)
T PRK14018         55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNG-GTLA-  132 (521)
T ss_pred             CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecccc-HHHH-
Confidence            689999999999999999999999999999875456666553                            3344 6788 


Q ss_pred             HcCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          320 QKLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       320 ~~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +.|+|.++||++++ ++|+ ....+.| ..+.++|.++|+.
T Consensus       133 k~fgV~giPTt~IIDkdGk-IV~~~~G-~~~~eeL~a~Ie~  171 (521)
T PRK14018        133 QSLNISVYPSWAIIGKDGD-VQRIVKG-SISEAQALALIRN  171 (521)
T ss_pred             HHcCCCCcCeEEEEcCCCe-EEEEEeC-CCCHHHHHHHHHH
Confidence            89999999999877 4565 2344455 7999999999984

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit

Probab=99.28  E-value=5.9e-11  Score=108.73  Aligned_cols=167  Identities=17%  Similarity=0.219  Sum_probs=102.3

Q ss_pred             CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcH-HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~p-et~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      ++++|++|||+||+++ +|+.+ .+.++.++|+|+|.... |..+..+.+++++|++++++.........   ..+... 
T Consensus        17 ~kVvValSGGVDSsvla~ll~~~~G~~v~av~vd~G~~~~~E~e~~~~~~~~~lgi~~~vvd~~e~fl~~---l~~v~~-   92 (311)
T TIGR00884        17 AKVIIALSGGVDSSVAAVLAHRAIGDRLTCVFVDHGLLRKGEAEQVVKTFGDRLGLNLVYVDAKERFLSA---LKGVTD-   92 (311)
T ss_pred             CcEEEEecCChHHHHHHHHHHHHhCCCEEEEEEeCCCCChHHHHHHHHHHHHHcCCcEEEEeCcHHHHhh---hcCCCC-
Confidence            6899999999999877 77766 47789999999997544 44444455567899999888554321111   112211 


Q ss_pred             CccchhchhhccccHHHHHHHc--c-CCEEEEeeeccCCccCccCC-CceecCCCCcCCcCCCCCeEEEeeCccCcHHHH
Q 018045           87 YEDGHQECCRVRKVRPLRRALK--G-LRAWITGQRKDQSPGTRSEI-PVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI  162 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~--~-~~~~i~G~R~~Es~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv  162 (361)
                      +. ..+..|......-+....+  + .+.+++|+..+|-...|... ..+.......+.. .....-.+.||.+.+++||
T Consensus        93 p~-~~r~~~~~~~~~~~~~~A~~~g~~~~la~Gt~~dD~~Es~~G~~~~iks~~~~~gl~-~~~~~~ii~PL~~l~K~EV  170 (311)
T TIGR00884        93 PE-EKRKIIGRVFIEVFEREAKKIGDAEYLAQGTIYPDVIESAAGTAHVIKSHHNVGGLP-EDMKLKLVEPLRELFKDEV  170 (311)
T ss_pred             hH-HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCChhhhhhccChhHhhhccCccccCC-hhhcCceEEEcccCcHHHH
Confidence            11 1122233333445555544  4 67899999998753233210 0000000000000 0012336899999999999


Q ss_pred             HHHHHhCCCCCCccccCCCC
Q 018045          163 WNFLRTMDVPINSLHSQGYI  182 (361)
Q Consensus       163 ~~yi~~~~lp~~~lY~~g~~  182 (361)
                      ..|.+..|||.+-.+++-|.
T Consensus       171 r~la~~lgLp~~~~~~~Pf~  190 (311)
T TIGR00884       171 RKLGKELGLPEEIVWRHPFP  190 (311)
T ss_pred             HHHHHHcCCCHHHhhCCCCC
Confidence            99999999998777777554

This protein of purine de novo biosynthesis is well-conserved. However, it appears to split into two separate polypeptide chains in most of the Archaea. This C-terminal region would be the larger subunit

>PRK00919 GMP synthase subunit B; Validated

Probab=99.28  E-value=5.2e-11  Score=108.36  Aligned_cols=163  Identities=17%  Similarity=0.197  Sum_probs=104.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY   87 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~   87 (361)
                      ++++|+||||.||+++ .++.+ .+.++.++|+|+|.....-.+.+.++++++ +++.++.........+   .+. .-+
T Consensus        22 ~kVlVa~SGGVDSsvla~la~~~lG~~v~aV~vD~G~~~~~E~e~a~~~~~~~-i~~~vvd~~e~fl~~L---~~v-~np   96 (307)
T PRK00919         22 GKAIIALSGGVDSSVAAVLAHRAIGDRLTPVFVDTGLMRKGETERIKETFSDM-LNLRIVDAKDRFLDAL---KGV-TDP   96 (307)
T ss_pred             CCEEEEecCCHHHHHHHHHHHHHhCCeEEEEEEECCCCCHHHHHHHHHHHhcc-CCcEEEECCHHHHHhc---cCC-CCh
Confidence            7899999999999877 77767 577899999999987777788888888887 8887775443211111   122 111


Q ss_pred             ccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHH
Q 018045           88 EDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNF  165 (361)
Q Consensus        88 ~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~y  165 (361)
                      .. .+.-|......-+.+..+  +.+.+++|+..+|....|..+...  . ...+.. .....-.+.||.+++.+||.+|
T Consensus        97 e~-rr~~c~r~~~~~~~~~A~~~g~~~Ia~Gtn~dD~iE~r~~iks~--~-nv~gl~-~~~~~~Ii~PL~~l~K~EVr~l  171 (307)
T PRK00919         97 EE-KRKIIGETFIRVFEEVAKEIGAEYLVQGTIAPDWIESEGGIKSH--H-NVGGLP-EGMVLKIVEPLRDLYKDEVREV  171 (307)
T ss_pred             HH-hhhHHHHHHHHHHHHHHHHcCCCEEEECCCCcchhhccCccccc--c-cccccC-hhhcCCcccCchhCcHHHHHHH
Confidence            11 111133333444444443  667899999998864333322110  0 000000 0012336899999999999999


Q ss_pred             HHhCCCCCCccccCCCC
Q 018045          166 LRTMDVPINSLHSQGYI  182 (361)
Q Consensus       166 i~~~~lp~~~lY~~g~~  182 (361)
                      .++.|||+.-++..-+.
T Consensus       172 a~~lGLp~~~~~r~p~~  188 (307)
T PRK00919        172 ARALGLPEEISERMPFP  188 (307)
T ss_pred             HHHcCCChhhhCCCCCC
Confidence            99999998666655444

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.26  E-value=5.1e-11  Score=97.80  Aligned_cols=89  Identities=17%  Similarity=0.301  Sum_probs=65.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-----------hHHHHHcC---CCCCCCeEEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-----------KEYAKQKL---QLGSFPTILFF  333 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-----------~~l~~~~~---~v~~~Pt~~~~  333 (361)
                      ..+..+|+|||+||++|+.+.|.+++++++++   +.++.|+.+...           .......|   ++.++||++++
T Consensus        49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~---~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LI  125 (153)
T TIGR02738        49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG---LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLV  125 (153)
T ss_pred             cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC---CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEE
Confidence            45667999999999999999999999999983   556666665420           22321345   78999999999


Q ss_pred             eCCCCCee-ecCCCCCCHHHHHHHHHHh
Q 018045          334 PKHSSKPI-KYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       334 ~~g~~~~~-~~~~~~~~~~~l~~~i~~~  360 (361)
                      +..+.... ...| ..+.++|.+.|+++
T Consensus       126 D~~G~~i~~~~~G-~~s~~~l~~~I~~l  152 (153)
T TIGR02738       126 NVNTRKAYPVLQG-AVDEAELANRMDEI  152 (153)
T ss_pred             eCCCCEEEEEeec-ccCHHHHHHHHHHh
Confidence            65432223 3445 78999999998876

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>TIGR02740 TraF-like TraF-like protein

Probab=99.26  E-value=3.9e-11  Score=108.03  Aligned_cols=88  Identities=15%  Similarity=0.254  Sum_probs=70.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------chHHHHHcCCCCCCCeEEEEeC-C
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPK-H  336 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~v~~~Pt~~~~~~-g  336 (361)
                      .++++||+||++||++|+.+.|.+++++++++   +.++.|++|..          +..++ ++|+|.++|+++++++ |
T Consensus       165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~~~~~~fp~~~~d~~la-~~~gV~~vPtl~Lv~~~~  240 (271)
T TIGR02740       165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDGGPLPGFPNARPDAGQA-QQLKIRTVPAVFLADPDP  240 (271)
T ss_pred             cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCCCccccCCcccCCHHHH-HHcCCCcCCeEEEEECCC
Confidence            47899999999999999999999999999984   56666776652          14688 8999999999999987 5


Q ss_pred             CCCeeecCCCCCCHHHHHHHHHHh
Q 018045          337 SSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +. ......|..+.++|.+.|..+
T Consensus       241 ~~-v~~v~~G~~s~~eL~~~i~~~  263 (271)
T TIGR02740       241 NQ-FTPIGFGVMSADELVDRILLA  263 (271)
T ss_pred             CE-EEEEEeCCCCHHHHHHHHHHH
Confidence            53 332232478999999888654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK14561 hypothetical protein; Provisional

Probab=99.26  E-value=9.8e-11  Score=100.41  Aligned_cols=139  Identities=16%  Similarity=0.226  Sum_probs=94.1

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH---HHhcCCCCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL---VRSKGLFSF   86 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~---~~~~~~~~~   86 (361)
                      +++|++|||+||+++ +++.+. .++.+++++.|..  .-.++++.+++.+|++++++..+.......   ....+.|  
T Consensus         2 kV~ValSGG~DSslll~~l~~~-~~v~a~t~~~g~~--~e~~~a~~~a~~lGi~~~~v~~~~~~~~~~~~~~~~~~~P--   76 (194)
T PRK14561          2 KAGVLFSGGKDSSLAAILLERF-YDVELVTVNFGVL--DSWKHAREAAKALGFPHRVLELDREILEKAVDMIIEDGYP--   76 (194)
T ss_pred             EEEEEEechHHHHHHHHHHHhc-CCeEEEEEecCch--hHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHcCCC--
Confidence            689999999999877 777666 5677889999862  347899999999999998886654322222   2222211  


Q ss_pred             CccchhchhhccccHHHHHHHccCCEEEEeeeccCCcc--CccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045           87 YEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPG--TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN  164 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~  164 (361)
                          ... |..+...-+..+..+++++++|+++||...  .|..+..++          ...++.-++||+.+++.||..
T Consensus        77 ----~~~-~~~l~~~~l~~~a~g~~~Ia~G~n~DD~~et~~r~~~~a~~----------~~~gi~iirPL~~~~K~eI~~  141 (194)
T PRK14561         77 ----NNA-IQYVHEHALEALAEEYDVIADGTRRDDRVPKLSRSEIQSLE----------DRKGVQYIRPLLGFGRKTIDR  141 (194)
T ss_pred             ----Cch-hHHHHHHHHHHHHcCCCEEEEEecCCCcchhccHHHHhhhh----------cCCCcEEEeeCCCCCHHHHHH
Confidence                112 334444555555578899999999999630  233222211          112455689999999999999


Q ss_pred             HHHhC
Q 018045          165 FLRTM  169 (361)
Q Consensus       165 yi~~~  169 (361)
                      +.+..
T Consensus       142 la~~l  146 (194)
T PRK14561        142 LVERL  146 (194)
T ss_pred             HHHhh
Confidence            98854

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Probab=99.25  E-value=9.5e-11  Score=109.42  Aligned_cols=161  Identities=11%  Similarity=0.102  Sum_probs=100.4

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-----C-----CcHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-----R-----LNPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q   75 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-----~-----~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~   75 (361)
                      +++|++|||+||+++ +|+.+.+.++..+|+++.     .     ..++-.+.++++++.+|++++++.-.....    .
T Consensus         2 kVlValSGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~c~~~~~~~~a~~va~~lgIp~~vid~~~~f~~~v~~   81 (352)
T TIGR00420         2 KVIVGLSGGVDSSVSAYLLKQQGYEVVGVFMKNWEEDDKNDGHGCTSAEDLRDAQAICEKLGIPLEKVNFQKEYWNKVFE   81 (352)
T ss_pred             eEEEEEeCCHHHHHHHHHHHHcCCeEEEEEEEcccccccccccCcCCHHHHHHHHHHHHHcCCCEEEEECHHHHHHHHHH
Confidence            689999999999877 888888888988988532     1     235677889999999999998875433211    1


Q ss_pred             HHHHhc--CCCCCCccchhchhhccccHHHHHHHc---cCCEEEEeeec---cCCccCccCCCceecCC--CCcC-CcCC
Q 018045           76 ALVRSK--GLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRK---DQSPGTRSEIPVVQVDP--VFEG-LEGG  144 (361)
Q Consensus        76 ~~~~~~--~~~~~~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~---~Es~~~R~~~~~~~~~~--~~~~-~~~~  144 (361)
                      .+...+  |..  + ...-.|...+|...+.++++   +.+.++||+.+   ++. +....+.....+.  .|.- ....
T Consensus        82 ~~~~~y~~g~t--p-npC~~Cnr~iKf~~l~~~a~~~~G~~~IATGHya~~~~d~-~~~~l~~~~d~~kDqsy~L~~l~~  157 (352)
T TIGR00420        82 PFIQEYKEGRT--P-NPDILCNKFIKFGAFLEYAAELLGNDKIATGHYARIAEIE-GKSLLLRALDKNKDQSYFLYHLSH  157 (352)
T ss_pred             HHHHHHHcCCC--C-CcchhhhHHHHHHHHHHHHHHHcCCCEEEECCcceEeCCC-CcEEEEEccCCCcCcceecccCCH
Confidence            122221  221  1 12334446667667665553   66899999987   333 1222222221111  1100 0000


Q ss_pred             CCCeEEEeeCccCcHHHHHHHHHhCCCCCCc
Q 018045          145 VGSLVKWNPVANVKGNDIWNFLRTMDVPINS  175 (361)
Q Consensus       145 ~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~  175 (361)
                      ..-.-.++||.+|+++||.+|++++|||+..
T Consensus       158 ~~l~~~i~PL~~~~K~EVr~~A~~~gl~~~~  188 (352)
T TIGR00420       158 EQLAKLLFPLGELLKPEVRQIAKNAGLPTAE  188 (352)
T ss_pred             HHhhhhcccCCCCCHHHHHHHHHHcCCCCCC
Confidence            0002258999999999999999999998644

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU, asuE, or mnmA) is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine (mnm5s2U34) present in the wobble position of some tRNAs. This enzyme appears not to occur in the Archaea.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.24  E-value=5.7e-11  Score=96.41  Aligned_cols=75  Identities=12%  Similarity=0.205  Sum_probs=60.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-------CCeEEEEEEcCCCc------------------------hH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-------NGVKVGKFRADGDQ------------------------KE  316 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-------~~v~~~~vd~~~~~------------------------~~  316 (361)
                      ++++++|+|||+||++|+.+.|.+.++.+.+++       .++.++.|+.+.+.                        ..
T Consensus        24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~  103 (146)
T cd03008          24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE  103 (146)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence            579999999999999999999999999887653       25899999887541                        24


Q ss_pred             HHHHcCCCCCCCeEEEEe-CCCCCeeecCC
Q 018045          317 YAKQKLQLGSFPTILFFP-KHSSKPIKYPS  345 (361)
Q Consensus       317 l~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~  345 (361)
                      ++ +.|+|.++|++++++ +|+  .+...+
T Consensus       104 l~-~~y~v~~iPt~vlId~~G~--Vv~~~~  130 (146)
T cd03008         104 LE-AQFSVEELPTVVVLKPDGD--VLAANA  130 (146)
T ss_pred             HH-HHcCCCCCCEEEEECCCCc--EEeeCh
Confidence            66 789999999999996 444  555544

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.21  E-value=2.8e-11  Score=94.55  Aligned_cols=87  Identities=25%  Similarity=0.481  Sum_probs=62.8

Q ss_pred             CCCCcEEEEEECCCChhHHhhHHHHHHHHH---HhcCCCeEEEEEEcCCCc-------------------hHHHHHcCCC
Q 018045          267 HRQEPWLVVLYAPWCQFCQAMEGSYVELAD---KLAGNGVKVGKFRADGDQ-------------------KEYAKQKLQL  324 (361)
Q Consensus       267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~---~~~~~~v~~~~vd~~~~~-------------------~~l~~~~~~v  324 (361)
                      .+++++++.|+++||++|+.+.+.+....+   .++. ++.++.++++...                   .++. +.|+|
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~v   80 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELA-QRYGV   80 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHH-HHTT-
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCCcccccccccccccchhhhHHHHHHH-HHcCC
Confidence            478999999999999999999999986544   3443 6888888887541                   3578 89999


Q ss_pred             CCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHH
Q 018045          325 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      .++||+++++ +|+. ...+.| ..+.++|.++|
T Consensus        81 ~gtPt~~~~d~~G~~-v~~~~G-~~~~~~l~~~L  112 (112)
T PF13098_consen   81 NGTPTIVFLDKDGKI-VYRIPG-YLSPEELLKML  112 (112)
T ss_dssp             -SSSEEEECTTTSCE-EEEEES-S--HHHHHHHH
T ss_pred             CccCEEEEEcCCCCE-EEEecC-CCCHHHHHhhC
Confidence            9999999996 5662 334555 78999998875

...

>cd01998 tRNA_Me_trans tRNA methyl transferase

Probab=99.21  E-value=3.8e-10  Score=105.57  Aligned_cols=159  Identities=13%  Similarity=0.114  Sum_probs=103.8

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--------cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HH
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----AL   77 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--------~pet~~~v~~~~~~~g~~i~~~~p~~~~~~----~~   77 (361)
                      +|+|++|||+||+++ +|+.+.+.++..+|++++..        .++-.++++++++.+|+++.++.-......    .+
T Consensus         1 kVlValSGGvDSsvla~lL~~~g~~v~~v~i~~~~~~~~~~~~~s~~d~~~a~~va~~lgI~~~vvd~~~~f~~~v~~~~   80 (349)
T cd01998           1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDEDDGKGGCCSEEDLKDARRVADQLGIPHYVVNFEKEYWEKVFEPF   80 (349)
T ss_pred             CEEEEecCCHHHHHHHHHHHHcCCcEEEEEEecccccccccCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHH
Confidence            589999999999877 88888888888999988732        346678999999999999988765432211    12


Q ss_pred             HHh--cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCc-cCCCceec-C----CCCcCCcCCC-C
Q 018045           78 VRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTR-SEIPVVQV-D----PVFEGLEGGV-G  146 (361)
Q Consensus        78 ~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R-~~~~~~~~-~----~~~~~~~~~~-~  146 (361)
                      +..  .|..  + .....|...+|...+.++..  +.+.++||+.+++.. .- ........ +    ..|.-..... .
T Consensus        81 i~~~~~g~t--p-npc~~C~r~ikf~~l~~~A~~~g~~~IatGHya~d~~-~~~~~~~l~rg~d~~kdqsy~L~~~~~~~  156 (349)
T cd01998          81 LEEYKKGRT--P-NPDILCNKEIKFGALLDYAKKLGADYIATGHYARIEE-DNNGRYRLLRGVDPNKDQSYFLSQLSQEQ  156 (349)
T ss_pred             HHHHHcCCC--C-CchHhhhhHHHHHHHHHHHHHcCcCEEEECCcCCeee-cCCCceEEeecCCCCCCcceEeccCCHHH
Confidence            222  2221  1 12334555578777776665  678999999988753 22 11111111 1    0010000000 0


Q ss_pred             CeEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045          147 SLVKWNPVANVKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       147 ~~~~~~Pi~~W~~~dv~~yi~~~~lp~  173 (361)
                      ....+.||.+++++||.+|.++++||.
T Consensus       157 l~~ii~PL~~~~K~eVr~~A~~~gl~~  183 (349)
T cd01998         157 LSRLIFPLGDLTKPEVREIAKELGLPV  183 (349)
T ss_pred             HhheeecCCCCCHHHHHHHHHHcCCCC
Confidence            123689999999999999999999984

This family represents tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional

Probab=99.20  E-value=5.8e-11  Score=114.20  Aligned_cols=154  Identities=12%  Similarity=0.149  Sum_probs=99.0

Q ss_pred             CCcEEEEecchHHHHHH-HHHHH-----cCCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            9 GNDIAIAFSGAEDVALI-EYAHL-----TGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         9 ~~~i~vs~SGGKDS~~l-~l~~~-----~~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      +++++|++|||+||++| |++.+     .+.++.++|+|.|..  ..+..++++++++.+|+++++.+-+..       .
T Consensus        15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~~s~~~~~~~~~~~~~l~i~~~~~~~~~~-------~   87 (436)
T PRK10660         15 SRQILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSPNADSWVKHCEQVCQQWQVPLVVERVQLD-------Q   87 (436)
T ss_pred             CCeEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCcchHHHHHHHHHHHHHcCCcEEEEEEecc-------C
Confidence            37899999999999877 77754     245788999999964  334468999999999999887643211       0


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCC--CcCC--cCCCCCeEEEeeCcc
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPV--FEGL--EGGVGSLVKWNPVAN  156 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~--~~~~--~~~~~~~~~~~Pi~~  156 (361)
                      .+      .....+.+..+-.-+.......+++++|+..||.. .-..+.......-  ..+.  ....++...++||++
T Consensus        88 ~~------~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq~-ET~L~~L~rG~g~~gL~gm~~~~~~~~~~liRPLL~  160 (436)
T PRK10660         88 RG------LGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQC-ETFLLALKRGSGPAGLSAMAEVSPFAGTRLIRPLLA  160 (436)
T ss_pred             CC------CCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHHH-HHHHHHHHcCCChhhccccceecccCCCcEeCCCcc
Confidence            00      01222333333344444445557899999999863 3222222221100  0000  000123457899999


Q ss_pred             CcHHHHHHHHHhCCCCCCcc
Q 018045          157 VKGNDIWNFLRTMDVPINSL  176 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp~~~l  176 (361)
                      .+.+||..|...++||+.+-
T Consensus       161 ~~k~ei~~ya~~~~l~~~~D  180 (436)
T PRK10660        161 RSREELEQYAQAHGLRWIED  180 (436)
T ss_pred             CCHHHHHHHHHHcCCCEEEC
Confidence            99999999999999998543

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.18  E-value=7.7e-11  Score=83.03  Aligned_cols=56  Identities=18%  Similarity=0.309  Sum_probs=51.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF  332 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~  332 (361)
                      ++.|+++||++|+.+++.++++++...  ++.|..+|++++ ++++ +++++.++||+++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~~~-~~l~-~~~~i~~vPti~i   58 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAAEF-PDLA-DEYGVMSVPAIVI   58 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcccC-HhHH-HHcCCcccCEEEE
Confidence            789999999999999999999987653  599999999999 9999 9999999999866

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.18  E-value=1.7e-10  Score=92.73  Aligned_cols=69  Identities=19%  Similarity=0.398  Sum_probs=57.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCc-----------------------hHHHHHcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQ-----------------------KEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~-----------------------~~l~~~~~  322 (361)
                      .++++||+||++||++|+.+.|.+.++.+.+.+  .++.++.|+++...                       ..++ +.|
T Consensus        17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~   95 (131)
T cd03009          17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN-RTF   95 (131)
T ss_pred             CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH-HHc
Confidence            578999999999999999999999999998865  25778878776541                       2466 789


Q ss_pred             CCCCCCeEEEEe-CCC
Q 018045          323 QLGSFPTILFFP-KHS  337 (361)
Q Consensus       323 ~v~~~Pt~~~~~-~g~  337 (361)
                      +|.++|++++++ +|+
T Consensus        96 ~v~~~P~~~lid~~G~  111 (131)
T cd03009          96 KIEGIPTLIILDADGE  111 (131)
T ss_pred             CCCCCCEEEEECCCCC
Confidence            999999999996 554

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional

Probab=99.18  E-value=5.4e-10  Score=104.30  Aligned_cols=171  Identities=12%  Similarity=0.061  Sum_probs=109.4

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH----HHhc-
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL----VRSK-   81 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~----~~~~-   81 (361)
                      ++++|++|||+||+++ +|+.+.+.++..+|++.+..  -++..+.++++++++|++++++..........    ...+ 
T Consensus         6 ~kVlValSGGVDSsvaa~LL~~~G~~V~~v~~~~~~~~~~~~d~~~a~~va~~LgIp~~vvd~~~~f~~~v~~~f~~~y~   85 (360)
T PRK14665          6 KRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEYLEDARALAERLGIGHITYDARKVFRKQIIDYFIDEYM   85 (360)
T ss_pred             CEEEEEEcCCHHHHHHHHHHHHcCCeEEEEEEecCCCCCChHHHHHHHHHHHHhCCCEEEEecHHHHHHHHHhhhhhHHh
Confidence            6899999999999877 88888888899999987532  35668889999999999998875432211111    1111 


Q ss_pred             -CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCC-cee-cCC----CC-cCCcCCCCCe--E
Q 018045           82 -GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIP-VVQ-VDP----VF-EGLEGGVGSL--V  149 (361)
Q Consensus        82 -~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~-~~~-~~~----~~-~~~~~~~~~~--~  149 (361)
                       |..   ......|...+|..-+.++.+  +.+.++||+.+.-.. . .... ... .|.    .| -...  ....  -
T Consensus        86 ~g~t---pnpC~~Cnr~ikf~~l~~~A~~~G~~~IATGHya~~~~-~-~~~~~l~~g~D~~kDQSyfL~~l--~~~~l~~  158 (360)
T PRK14665         86 SGHT---PVPCTLCNNYLKWPLLAKIADEMGIFYLATGHYVRKQW-I-DGNYYITPAEDVDKDQSFFLWGL--RQEILQR  158 (360)
T ss_pred             ccCC---CCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccceec-c-CCcEEEEeecCCCCCceEEecCC--CHHHHhh
Confidence             211   113345666688777776665  678999998874321 1 1111 111 111    00 0000  0001  1


Q ss_pred             EEeeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCC
Q 018045          150 KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCT  190 (361)
Q Consensus       150 ~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct  190 (361)
                      .++||.+++++||.++.++.|++.  .. .--.|-|+++|+
T Consensus       159 ~ifPLg~~~K~eVr~~A~~~gl~~--~a-~k~eSq~iCF~~  196 (360)
T PRK14665        159 MLLPMGGMTKSEARAYAAERGFEK--VA-KKRDSLGVCFCP  196 (360)
T ss_pred             eeccCcCCCHHHHHHHHHHCCCCc--cC-cCCCCCccccCC
Confidence            389999999999999999999732  22 235677888886

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.17  E-value=1.7e-10  Score=93.02  Aligned_cols=76  Identities=16%  Similarity=0.344  Sum_probs=60.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------hHHHHHc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK  321 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~------------------------~~l~~~~  321 (361)
                      +++.++|+||++||++|+.+.|.++++++.+++.  ++.++.|+++...                        ..+. +.
T Consensus        16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~   94 (132)
T cd02964          16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE-KQ   94 (132)
T ss_pred             CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH-HH
Confidence            5799999999999999999999999999998763  5788888877541                        2455 67


Q ss_pred             CCCCCCCeEEEEeCCCCCeeecCC
Q 018045          322 LQLGSFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       322 ~~v~~~Pt~~~~~~g~~~~~~~~~  345 (361)
                      |+|.++|++++++.+++ .+...+
T Consensus        95 ~~v~~iPt~~lid~~G~-iv~~~~  117 (132)
T cd02964          95 FKVEGIPTLVVLKPDGD-VVTTNA  117 (132)
T ss_pred             cCCCCCCEEEEECCCCC-EEchhH
Confidence            99999999999964332 454443

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.17  E-value=2.8e-10  Score=97.13  Aligned_cols=86  Identities=16%  Similarity=0.300  Sum_probs=66.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------hHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~~v~  325 (361)
                      .+++++|+||++||++|+.+.|.+.++.+.    ++.++.|+.+.+.                      ..+. ..|+|.
T Consensus        67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~gv~  141 (185)
T PRK15412         67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG-LDLGVY  141 (185)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHc----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHH-HhcCCC
Confidence            588999999999999999999999988652    5788888865431                      1244 578999


Q ss_pred             CCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+.++++ +|+ ....+.| ..+.+++.+.|+.+
T Consensus       142 ~~P~t~vid~~G~-i~~~~~G-~~~~~~l~~~i~~~  175 (185)
T PRK15412        142 GAPETFLIDGNGI-IRYRHAG-DLNPRVWESEIKPL  175 (185)
T ss_pred             cCCeEEEECCCce-EEEEEec-CCCHHHHHHHHHHH
Confidence            999888885 554 3455555 78999998888764

>PRK08349 hypothetical protein; Validated

Probab=99.15  E-value=2.1e-10  Score=98.94  Aligned_cols=149  Identities=13%  Similarity=0.117  Sum_probs=88.5

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcE---EEEcCChH--HHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRI---EYMFPDAV--EVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i---~~~~p~~~--~~~~~~~~~~~   83 (361)
                      ++++++|||+||+++ +++.+.+.++..+|+|++.. .....+.++++.+.+|+++   .++.....  .........+.
T Consensus         2 ~~vvllSGG~DS~v~~~~l~~~g~~v~av~~d~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   81 (198)
T PRK08349          2 KAVALLSSGIDSPVAIYLMLRRGVEVYPVHFRQDEKKEEKVRELVERLQELHGGKLKDPVVVDAFEEQGPVFEKLRELKK   81 (198)
T ss_pred             cEEEEccCChhHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCcceEEEEcchHHhHHHHHHHHhhCC
Confidence            679999999999877 88888888999999998521 1223334444444445764   33322111  11111111111


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                          ......-|..+...-+.++..  +.+.+++|++.+|.. .-...+....+.        ..++..++|+++++++|
T Consensus        82 ----~~~~c~~cr~~~~~~a~~~A~~~g~~~I~tG~~~~d~a-~~~l~nl~~~~~--------~~~i~i~rPL~~~~K~e  148 (198)
T PRK08349         82 ----EKWTCIFCKYTMYRKAERIAHEIGASAIITGDSLGQVA-SQTLDNLMVIST--------ATDLPVLRPLIGLDKEE  148 (198)
T ss_pred             ----CCCchHHHHHHHHHHHHHHHHHcCCCEEEEecCCchHH-HHHHHHHhcccc--------ccCCeEEcCCCCCCHHH
Confidence                012222255555566666554  668999999888852 222222222211        02345789999999999


Q ss_pred             HHHHHHhCCCC
Q 018045          162 IWNFLRTMDVP  172 (361)
Q Consensus       162 v~~yi~~~~lp  172 (361)
                      |..|.++.|++
T Consensus       149 I~~~a~~~g~~  159 (198)
T PRK08349        149 IVKIAKEIGTF  159 (198)
T ss_pred             HHHHHHHcCCh
Confidence            99999999953

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.14  E-value=3.4e-10  Score=85.60  Aligned_cols=68  Identities=24%  Similarity=0.448  Sum_probs=56.2

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCc------------------------hHHHHHcCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQ------------------------KEYAKQKLQ  323 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~------------------------~~l~~~~~~  323 (361)
                      +|+++|+|||+||++|+.+.|.+.++.+.++ +.++.|+.|..|...                        ..+. +.|+
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~   79 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELL-KKYG   79 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHH-HHTT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHH-HHCC
Confidence            5899999999999999999999999999999 348999999988651                        3466 7899


Q ss_pred             CCCCCeEEEEeCCC
Q 018045          324 LGSFPTILFFPKHS  337 (361)
Q Consensus       324 v~~~Pt~~~~~~g~  337 (361)
                      |.++|++++++..+
T Consensus        80 i~~iP~~~lld~~G   93 (95)
T PF13905_consen   80 INGIPTLVLLDPDG   93 (95)
T ss_dssp             -TSSSEEEEEETTS
T ss_pred             CCcCCEEEEECCCC
Confidence            99999999997654

...

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.13  E-value=3.7e-10  Score=90.31  Aligned_cols=79  Identities=18%  Similarity=0.288  Sum_probs=60.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-----------------------CCCchHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-----------------------DGDQKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-----------------------~~~~~~l~~~~~~v  324 (361)
                      .+++++|+||++||++|+.+.|.++++++.+   ++.++.|+.                       |.. ..++ +.|++
T Consensus        24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~~-~~~~v   98 (127)
T cd03010          24 KGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPD-GRVG-IDLGV   98 (127)
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCc-chHH-HhcCC
Confidence            5789999999999999999999999998775   266666653                       344 5778 78999


Q ss_pred             CCCCeEEEEe-CCCCCeeecCCCCCCHHHH
Q 018045          325 GSFPTILFFP-KHSSKPIKYPSERRDVDSL  353 (361)
Q Consensus       325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l  353 (361)
                      .++|+.+++. +|+ ....+.| ..+.+.|
T Consensus        99 ~~~P~~~~ld~~G~-v~~~~~G-~~~~~~~  126 (127)
T cd03010          99 YGVPETFLIDGDGI-IRYKHVG-PLTPEVW  126 (127)
T ss_pred             CCCCeEEEECCCce-EEEEEec-cCChHhc
Confidence            9999777775 665 2445555 5666654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=99.11  E-value=1.1e-09  Score=86.49  Aligned_cols=104  Identities=11%  Similarity=0.093  Sum_probs=85.6

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECC--CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAP--WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~--wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ....++..+++.++.   .....+|+|-.+  -++.+....=+++++++.|.+.++.|++||+|.+ ++++ .+|+|.++
T Consensus        18 g~~~~~~~~~~~~~~---~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-~~LA-~~fgV~si   92 (132)
T PRK11509         18 GWTPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIG-DRFGVFRF   92 (132)
T ss_pred             CCCccccccHHHHHh---CCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-HHHH-HHcCCccC
Confidence            345567788888886   566666666543  4788889999999999999753599999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+  .+....|..+.+++.++|+++
T Consensus        93 PTLl~FkdGk--~v~~i~G~~~k~~l~~~I~~~  123 (132)
T PRK11509         93 PATLVFTGGN--YRGVLNGIHPWAELINLMRGL  123 (132)
T ss_pred             CEEEEEECCE--EEEEEeCcCCHHHHHHHHHHH
Confidence            9999999999  454444478999999999875

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.11  E-value=5.4e-10  Score=88.73  Aligned_cols=93  Identities=19%  Similarity=0.263  Sum_probs=68.1

Q ss_pred             ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE---------------------cC
Q 018045          253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR---------------------AD  311 (361)
Q Consensus       253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd---------------------~~  311 (361)
                      .++.+.+.....   .+++++|+||++||++|+.+.|.+.++++.+.   +..+.+|                     .+
T Consensus         7 ~~~g~~~~~~~~---~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~---~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d   80 (123)
T cd03011           7 TLDGEQFDLESL---SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP---VVSVALRSGDDGAVARFMQKKGYGFPVIND   80 (123)
T ss_pred             cCCCCEeeHHHh---CCCEEEEEEECCcChhhhhhChHHHHHHhhCC---EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence            344444444333   56899999999999999999999999987742   2222222                     13


Q ss_pred             CCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHH
Q 018045          312 GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMA  355 (361)
Q Consensus       312 ~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~  355 (361)
                      .+ ..++ ++|+|.++|+++++++++ ....+.| ..+.+.|.+
T Consensus        81 ~~-~~~~-~~~~i~~~P~~~vid~~g-i~~~~~g-~~~~~~~~~  120 (123)
T cd03011          81 PD-GVIS-ARWGVSVTPAIVIVDPGG-IVFVTTG-VTSEWGLRL  120 (123)
T ss_pred             CC-cHHH-HhCCCCcccEEEEEcCCC-eEEEEec-cCCHHHHHh
Confidence            34 6788 899999999999998777 4555665 678888765

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.10  E-value=6e-10  Score=94.08  Aligned_cols=85  Identities=15%  Similarity=0.226  Sum_probs=65.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----------------------CchHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----------------------DQKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----------------------~~~~l~~~~~~v  324 (361)
                      .+++++|+||++||++|+.+.|.++++++.    ++.++.|+.+.                       + ..+. +.|++
T Consensus        62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~-~~~~-~~~~v  135 (173)
T TIGR00385        62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPN-GKLG-LDLGV  135 (173)
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHc----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCC-CchH-HhcCC
Confidence            589999999999999999999999988753    36666666432                       2 3556 67899


Q ss_pred             CCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++|+.++++ +|+ ....+.| ..+.+++.++|+++
T Consensus       136 ~~~P~~~~id~~G~-i~~~~~G-~~~~~~l~~~l~~~  170 (173)
T TIGR00385       136 YGAPETFLVDGNGV-ILYRHAG-PLNNEVWTEGFLPA  170 (173)
T ss_pred             eeCCeEEEEcCCce-EEEEEec-cCCHHHHHHHHHHH
Confidence            9999877774 565 2444455 78999999998865

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.08  E-value=1.6e-09  Score=84.97  Aligned_cols=101  Identities=12%  Similarity=0.122  Sum_probs=76.5

Q ss_pred             ccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCC-chHHHHHcCCCCCCCeEE
Q 018045          257 TGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       257 ~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~vd~~~~-~~~l~~~~~~v~~~Pt~~  331 (361)
                      .+|++.++.. +++|+++|+|+++||++|+.|... |  .++.+.++. ++.+..+|.+.. ...++ ..|++.++|+++
T Consensus         4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~~~e~~~~~-~~~~~~~~P~~~   81 (114)
T cd02958           4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDIDSSEGQRFL-QSYKVDKYPHIA   81 (114)
T ss_pred             CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCCCccHHHHH-HHhCccCCCeEE
Confidence            3455554433 358999999999999999999875 3  667777776 788888998752 26788 899999999999


Q ss_pred             EEeC-CCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          332 FFPK-HSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       332 ~~~~-g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++.. .+. .+....|..++++|.+.|++.
T Consensus        82 ~i~~~~g~-~l~~~~G~~~~~~f~~~L~~~  110 (114)
T cd02958          82 IIDPRTGE-VLKVWSGNITPEDLLSQLIEF  110 (114)
T ss_pred             EEeCccCc-EeEEEcCCCCHHHHHHHHHHH
Confidence            9975 333 444444489999999888764

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK08384 thiamine biosynthesis protein ThiI; Provisional

Probab=99.06  E-value=1.3e-09  Score=102.20  Aligned_cols=158  Identities=12%  Similarity=0.150  Sum_probs=103.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhC-------CcEEEEcCCh-HHHHHHHHh
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFG-------IRIEYMFPDA-VEVQALVRS   80 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g-------~~i~~~~p~~-~~~~~~~~~   80 (361)
                      +++++++|||+||.++ .|+.+.|.++..+|+|+|   ++..+-++++++.++       +++.++.... ..+...+..
T Consensus       181 gkvlvllSGGiDSpVAa~ll~krG~~V~~v~f~~g---~~~~e~v~~la~~L~~~~~~~~i~l~~v~~~~~~~v~~~i~~  257 (381)
T PRK08384        181 GKVVALLSGGIDSPVAAFLMMKRGVEVIPVHIYMG---EKTLEKVRKIWNQLKKYHYGGKAELIVVKPQERERIIQKLKE  257 (381)
T ss_pred             CcEEEEEeCChHHHHHHHHHHHcCCeEEEEEEEeC---HHHHHHHHHHHHHhcccccCCcceEEEEChHHHHHHHHHHHH
Confidence            5899999999999877 888899999999999988   677888999999877       4455554321 112222212


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCcc--CCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRS--EIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~--~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                      ....    ...+.-|..+...-+++..+  +.++++||+..+|-. .-.  ++......          .....++||+.
T Consensus       258 ~~~~----~~~C~~Ckr~m~r~a~~iA~~~g~~~IaTGhslgqva-SQtl~Nl~~i~~~----------~~lpilRPLi~  322 (381)
T PRK08384        258 LKKE----NYTCVFCKFMMVKHADRIAKEFGAKGIVMGDSLGQVA-SQTLENMYIVSQA----------SDLPIYRPLIG  322 (381)
T ss_pred             hccC----CCchHHHHHHHHHHHHHHHHHcCCCEEEEcccchhHH-HHHHHHHHHHhcc----------CCCcEEeeCCC
Confidence            1111    11222255444555555554  667999999988842 211  12111111          13457999999


Q ss_pred             CcHHHHHHHHHhCC-CCCCccccCCCCCCCCCCCC
Q 018045          157 VKGNDIWNFLRTMD-VPINSLHSQGYISIGCEPCT  190 (361)
Q Consensus       157 W~~~dv~~yi~~~~-lp~~~lY~~g~~~~GC~~Ct  190 (361)
                      ++++||-++.++.| +++..   ..+  -+|.+.|
T Consensus       323 ~dK~EIi~~Ar~iGT~~~s~---~~~--~dc~f~p  352 (381)
T PRK08384        323 MDKEEIVAIAKTIGTFELST---LPE--DEIPFIP  352 (381)
T ss_pred             CCHHHHHHHHHHcCCccccc---CCC--CceEEeC
Confidence            99999999999999 77653   233  2475555

>TIGR00552 nadE NAD+ synthetase

Probab=99.05  E-value=2.4e-09  Score=95.78  Aligned_cols=148  Identities=10%  Similarity=0.123  Sum_probs=95.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCC-CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH-hcCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGR-LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR-SKGLFS   85 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~-~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~-~~~~~~   85 (361)
                      ++++|++|||+||+++ +|+.+. +.++..++++.+. ..++..+.++++++.+|++.+++.-... ...+.. ......
T Consensus        23 ~~V~vglSGGiDSsvla~l~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~~-~~~~~~~~~~~~~  101 (250)
T TIGR00552        23 KGVVLGLSGGIDSAVVAALCVEALGEQNHALLLPHSVQTPEQDVQDALALAEPLGINYKNIDIAPI-AASFQAQTETGDE  101 (250)
T ss_pred             CCEEEECCCcHHHHHHHHHHHHhhCCceEEEEECCccCCCHHHHHHHHHHHHHhCCeEEEEcchHH-HHHHHHHhccccC
Confidence            7899999999999877 777775 4467777778774 3467889999999999999988744322 111111 001100


Q ss_pred             CCc-cchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHH
Q 018045           86 FYE-DGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI  162 (361)
Q Consensus        86 ~~~-~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv  162 (361)
                      ... .....-|...++.-+....+  +..++.||++.+... ... .       .+.      .....++||.+.++.+|
T Consensus       102 ~~~~~~~~n~car~R~~~L~~~A~~~g~~~laTgh~~E~~~-G~~-t-------~~g------d~~~~i~PL~~l~K~eV  166 (250)
T TIGR00552       102 LSDFLAKGNLKARLRMAALYAIANKHNLLVLGTGNKSELML-GYF-T-------KYG------DGGCDIAPIGDLFKTQV  166 (250)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHhcCCEEEcCCcHHHHhh-CCe-e-------ccc------CCccCccccCCCcHHHH
Confidence            000 01123355567777776665  456888899865432 110 0       110      12236899999999999


Q ss_pred             HHHHHhCCCCC
Q 018045          163 WNFLRTMDVPI  173 (361)
Q Consensus       163 ~~yi~~~~lp~  173 (361)
                      +.|.+.+++|.
T Consensus       167 ~~lA~~~g~p~  177 (250)
T TIGR00552       167 YELAKRLNVPE  177 (250)
T ss_pred             HHHHHHHCccH
Confidence            99999999864

NAD+ synthetase is a nearly ubiquitous enzyme for the final step in the biosynthesis of the essensial cofactor NAD. The member of this family from Bacillus subtilis is a strictly NH(3)-dependent NAD(+) synthetase of 272 amino acids. Proteins consisting only of the domain modeled here may be named as NH3-dependent NAD+ synthetase. Amidotransferase activity may reside in a separate protein, or not be present. Some other members of the family, such as from Mycobacterium tuberculosis, are considerably longer, contain an apparent amidotransferase domain, and show glutamine-dependent as well as NH(3)-dependent activity.

>TIGR00364 exsB protein

Probab=99.05  E-value=4e-09  Score=91.29  Aligned_cols=162  Identities=14%  Similarity=0.157  Sum_probs=97.6

Q ss_pred             EEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH----HHhcCCCCC
Q 018045           12 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL----VRSKGLFSF   86 (361)
Q Consensus        12 i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~----~~~~~~~~~   86 (361)
                      ++|++|||+||+++ +++.+.+.++..+++|.|....+-.++++++++.+|++++++..+.  +..+    ......+..
T Consensus         1 ~vv~lSGG~DSs~~~~~~~~~g~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~--~~~~~~~~~~~~~~~~~   78 (201)
T TIGR00364         1 AVVVLSGGQDSTTCLAIAKDEGYEVHAITFDYGQRHSRELESARKIAEALGIEHHVIDLSL--LKQLGGSALTDESEIPP   78 (201)
T ss_pred             CEEEeccHHHHHHHHHHHHHcCCcEEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEechh--hcccccccccCCCCCCC
Confidence            37899999999877 7887877889999999997656678899999999999988764432  1110    000100000


Q ss_pred             Cc-cc---hhchhhccc----cHHHHHHHc--cCCEEEEeeeccCCccC---ccC-CCceecCCCCcCCcCCCCCeEEEe
Q 018045           87 YE-DG---HQECCRVRK----VRPLRRALK--GLRAWITGQRKDQSPGT---RSE-IPVVQVDPVFEGLEGGVGSLVKWN  152 (361)
Q Consensus        87 ~~-~~---~~~cc~~~K----~~pl~~~~~--~~~~~i~G~R~~Es~~~---R~~-~~~~~~~~~~~~~~~~~~~~~~~~  152 (361)
                      .. ..   .+.+|.-.|    ..-+..+..  +.+.+++|+..+|-...   |.. +..+.......    ...++.-++
T Consensus        79 ~~~~~~~~~~~~~~~~r~~~~~~~a~~~A~~~g~~~v~~G~~~~d~~~~~d~~~~f~~~~~~~~~~~----~~~~~~i~~  154 (201)
T TIGR00364        79 QKSNEEDTLPNTFVPGRNAIFLSIAASYAEALGAEAVITGVCETDFSGYPDCRDEFVKAFNHALNLG----MLTPVKIRA  154 (201)
T ss_pred             cCccccCCCCCeeecCCcHHHHHHHHHHHHHCCCCEEEEEeccCcCCCCCCCcHHHHHHHHHHHHhh----cCCCeEEEE
Confidence            00 00   112221111    122333332  67899999999884211   211 00000000000    012455689


Q ss_pred             eCccCcHHHHHHHHHhCC---CCCCccccC
Q 018045          153 PVANVKGNDIWNFLRTMD---VPINSLHSQ  179 (361)
Q Consensus       153 Pi~~W~~~dv~~yi~~~~---lp~~~lY~~  179 (361)
                      |++++++.||-++.+++|   +|+.+-+.+
T Consensus       155 Pl~~~~K~eI~~la~~~g~~~~~~~~t~sC  184 (201)
T TIGR00364       155 PLMDLTKAEIVQLADELGVLDLVIKLTYSC  184 (201)
T ss_pred             CCcCCCHHHHHHHHHHcCCccccHhhCCcC
Confidence            999999999999999999   876665544

This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown.

>PRK11106 queuosine biosynthesis protein QueC; Provisional

Probab=99.04  E-value=3.5e-09  Score=92.71  Aligned_cols=177  Identities=13%  Similarity=0.145  Sum_probs=104.8

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHH-HHH-HHHhcC--C
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVE-VQA-LVRSKG--L   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~-~~~-~~~~~~--~   83 (361)
                      ++++|+||||.||+++ .++.+.+.++..+++|.|.....-++.++++++++|++ .+++.-+.-. +.. ......  .
T Consensus         2 ~kvvVl~SGG~DSt~~l~~a~~~~~~v~alt~dygq~~~~El~~a~~ia~~~gi~~h~vid~~~l~~l~~s~Lt~~~~~~   81 (231)
T PRK11106          2 KRAVVVFSGGQDSTTCLIQALQQYDEVHCVTFDYGQRHRAEIDVARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPV   81 (231)
T ss_pred             CcEEEEeeCcHHHHHHHHHHHhcCCeEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccccC
Confidence            4799999999999877 67766666788999999987788889999999999996 6665333110 000 000000  0


Q ss_pred             CCCC---ccchhch--hhccccHHHHH-HH--ccCCEEEEeeeccCCccCccC----CCceecCCCCcCCcCCCCCeEEE
Q 018045           84 FSFY---EDGHQEC--CRVRKVRPLRR-AL--KGLRAWITGQRKDQSPGTRSE----IPVVQVDPVFEGLEGGVGSLVKW  151 (361)
Q Consensus        84 ~~~~---~~~~~~c--c~~~K~~pl~~-~~--~~~~~~i~G~R~~Es~~~R~~----~~~~~~~~~~~~~~~~~~~~~~~  151 (361)
                      +...   ...+..|  |+..=...+.. +.  .+.+.+++|+.++|....|..    +..++.--.+.    ...++--.
T Consensus        82 p~~~~~~~~~~~~~vP~RN~lflslAa~~A~~~g~~~I~~G~n~~D~~~YpDcr~~Fi~A~~~~~~~~----~~~~i~I~  157 (231)
T PRK11106         82 PDYEPEADGLPNTFVPGRNILFLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLG----MAKDIRFE  157 (231)
T ss_pred             CccccccCCCCCEEEecHHHHHHHHHHHHHHHcCCCEEEEeeccCcCCCCCCCCHHHHHHHHHHHHhc----cCCCcEEE
Confidence            1000   0112223  22222222222 11  277899999999994346655    22211110000    01135567


Q ss_pred             eeCccCcHHHHHHHHHhCC-CCC--CccccC--CCCCCCCCCCC
Q 018045          152 NPVANVKGNDIWNFLRTMD-VPI--NSLHSQ--GYISIGCEPCT  190 (361)
Q Consensus       152 ~Pi~~W~~~dv~~yi~~~~-lp~--~~lY~~--g~~~~GC~~Ct  190 (361)
                      .|+.+|+..||+..-++.| +|+  .-=|.+  |...-+|=.|+
T Consensus       158 aPl~~lsK~eI~~l~~~lg~v~~~~~~T~SCy~g~~g~~CG~C~  201 (231)
T PRK11106        158 TPLMWLNKAETWALADYYGQLDLVRHETLTCYNGIKGDGCGHCA  201 (231)
T ss_pred             ecCCCCCHHHHHHHHHHcCCcccccCceeeccCcCCCCCCCCCH
Confidence            9999999999999999999 877  444433  21112566664

>PLN02347 GMP synthetase

Probab=99.04  E-value=1.8e-09  Score=105.81  Aligned_cols=164  Identities=13%  Similarity=0.139  Sum_probs=104.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      ++++|++|||+||+++ +|+.+ .+.++..+|+|+|.. ..|..+.++.+++++|++++++..+...+..   -.|.   
T Consensus       230 ~~vvvalSGGVDSsvla~l~~~alG~~v~av~id~g~~~~~E~~~~~~~~a~~lgi~~~vvd~~e~fl~~---l~~~---  303 (536)
T PLN02347        230 EHVICALSGGVDSTVAATLVHKAIGDRLHCVFVDNGLLRYKEQERVMETFKRDLHLPVTCVDASERFLSK---LKGV---  303 (536)
T ss_pred             CeEEEEecCChhHHHHHHHHHHHhCCcEEEEEEeCCCCChhHHHHHHHHHHHHcCCcEEEEeCcHHHHhh---CCCC---
Confidence            5799999999999877 78888 687899999999964 5577666788999999999988655322221   1232   


Q ss_pred             Cccchhchhhcccc---HHHHHHHc------cC--CEEEEeeeccCCcc--CccCC-----Cce-ecCCCCcCCcCCCCC
Q 018045           87 YEDGHQECCRVRKV---RPLRRALK------GL--RAWITGQRKDQSPG--TRSEI-----PVV-QVDPVFEGLEGGVGS  147 (361)
Q Consensus        87 ~~~~~~~cc~~~K~---~pl~~~~~------~~--~~~i~G~R~~Es~~--~R~~~-----~~~-~~~~~~~~~~~~~~~  147 (361)
                      -  ++..-|...|.   +-+.+..+      +.  +.++.|+..+|-..  .|...     ..+ +-.+.+.-.  ....
T Consensus       304 ~--~pe~k~~~~~~~f~~~f~~~~~~~~~~~~~~~~~l~qGt~~~D~~es~~r~g~~~~~~~~ik~hhn~~~l~--~~~~  379 (536)
T PLN02347        304 T--DPEKKRKIIGAEFIEVFDEFAHKLEQKLGKKPAFLVQGTLYPDVIESCPPPGSGRTHSHTIKSHHNVGGLP--KDMK  379 (536)
T ss_pred             C--ChHHhcchhCchHHHHHHHHHHHHHHhhCCCCcEEccCCcccccccccCCCCCccccccceeeecccccCh--HHHH
Confidence            1  33333444444   55554442      22  56778998877421  34332     011 000000000  0001


Q ss_pred             eEEEeeCccCcHHHHHHHHHhCCCCCCccccCCCCC
Q 018045          148 LVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYIS  183 (361)
Q Consensus       148 ~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~  183 (361)
                      .--+.||.+++.+||.+..++.|||-+-++++-++.
T Consensus       380 ~~ii~PL~~l~K~eVR~la~~lgl~~~~~~~~p~p~  415 (536)
T PLN02347        380 LKLIEPLKLLFKDEVRKLGRLLGVPEAFLKRHPFPG  415 (536)
T ss_pred             CccccchhhCcHHHHHHHHHHcCCCHHHhcCCCcCC
Confidence            124799999999999999999999866667665543

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=99.03  E-value=1.4e-09  Score=80.93  Aligned_cols=76  Identities=9%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR  348 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~  348 (361)
                      +..-+..|+++||++|..+.+.++++++.+.  ++.+..+|.+.. ++++ ++|+|.++||+++  +|+   ..+.| ..
T Consensus        12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~-~e~a-~~~~V~~vPt~vi--dG~---~~~~G-~~   81 (89)
T cd03026          12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF-QDEV-EERGIMSVPAIFL--NGE---LFGFG-RM   81 (89)
T ss_pred             CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC-HHHH-HHcCCccCCEEEE--CCE---EEEeC-CC
Confidence            4556888999999999999999999998875  499999999999 9999 9999999999975  676   23345 45


Q ss_pred             CHHHHH
Q 018045          349 DVDSLM  354 (361)
Q Consensus       349 ~~~~l~  354 (361)
                      +.+++.
T Consensus        82 ~~~e~~   87 (89)
T cd03026          82 TLEEIL   87 (89)
T ss_pred             CHHHHh
Confidence            666654

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=99.03  E-value=1.8e-09  Score=89.41  Aligned_cols=110  Identities=18%  Similarity=0.199  Sum_probs=72.1

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE   88 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~   88 (361)
                      .++|++|||+||+++ +++.+... ++.++++|.|...++..++++++++. |+++..+.++........... ...-..
T Consensus         3 d~~v~lSGG~DSs~ll~l~~~~~~~~v~~v~~~~g~~~~~~~~~~~~~a~~-g~~~~~~~~~~~~~~~~~~~~-l~~~~~   80 (154)
T cd01996           3 DCIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKNIKNLIKK-GLDLDHLVINPEEMKDLQLAR-FKAKVG   80 (154)
T ss_pred             CEEEECCCchhHHHHHHHHHHHhCCceEEEEeCCCCCCHHHHHHHHHHHHh-CCCeEEEecCHHHHHHHHHHH-HhcccC
Confidence            589999999999876 88877544 67789999999889999999999999 888766655543222211110 000001


Q ss_pred             cchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045           89 DGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP  123 (361)
Q Consensus        89 ~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~  123 (361)
                      .....|...+ ..-+.+..+  +.+++++|..++|..
T Consensus        81 ~p~~~~~~~~-~~~~~~~A~~~g~~~il~G~~~de~~  116 (154)
T cd01996          81 DPCWPCDTAI-FTSLYKVALKFGIPLIITGENPAQEF  116 (154)
T ss_pred             CCChhhhHHH-HHHHHHHHHHhCcCEEEeCcCHHHhc
Confidence            1122243333 334444443  567999999999975

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domain has a strongly conserved motif SGGKD at the N terminus.

>TIGR00032 argG argininosuccinate synthase

Probab=99.02  E-value=2.6e-09  Score=100.68  Aligned_cols=148  Identities=17%  Similarity=0.203  Sum_probs=95.5

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVRSKGLFSFYE   88 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~~~~~~~~~~   88 (361)
                      +++|+||||.||+++ +++.+.+.++.++++|+|.. .+-.+.+++.++.+|+ +++++.....    +...+..+... 
T Consensus         1 kVvla~SGGlDSsvll~~l~e~g~~V~av~id~Gq~-~~e~~~a~~~a~~lGi~~~~viD~~~e----f~~~~~~~~i~-   74 (394)
T TIGR00032         1 KVVLAYSGGLDTSVCLKWLREKGYEVIAYTADVGQP-EEDIDAIPEKALEYGAENHYTIDAREE----FVKDYGFAAIQ-   74 (394)
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEEEecCCC-hHHHHHHHHHHHHhCCCeEEEEeCHHH----HHHhhchhhhc-
Confidence            589999999999877 88877788899999999953 6778889999999997 6777644322    22222222111 


Q ss_pred             cchhchh-hcccc---HHH-----HHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc-
Q 018045           89 DGHQECC-RVRKV---RPL-----RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN-  156 (361)
Q Consensus        89 ~~~~~cc-~~~K~---~pl-----~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~-  156 (361)
                      .+...|| +.++.   +|+     .+..+  +.++++.|.........|...+.....          ++.-.+.|+.+ 
T Consensus        75 ~n~~y~~~Y~l~t~laR~li~~~l~~~A~~~G~~~Ia~G~t~~gnDqvrf~r~~~~~~----------~~l~viaPLrew  144 (394)
T TIGR00032        75 ANAFYEGTYPLSTALARPLIAKKLVEAAKKEGANAVAHGCTGKGNDQERFERSIRLLN----------PDLKVIAPWRDL  144 (394)
T ss_pred             CCccccCcccccchhhHHHHHHHHHHHHHHcCCCEEEECccCCcchHHHHHHHHHHhC----------CCCeEECchhhc
Confidence            1223333 33333   122     22222  678999999765331123222222122          23457899954 


Q ss_pred             -CcHHHHHHHHHhCCCCCC
Q 018045          157 -VKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       157 -W~~~dv~~yi~~~~lp~~  174 (361)
                       ++.+|+-+|++++|||+.
T Consensus       145 ~l~r~ei~~ya~~~Gip~~  163 (394)
T TIGR00032       145 NFTREEEIEYAIQCGIPYP  163 (394)
T ss_pred             CCCHHHHHHHHHHcCCCee
Confidence             699999999999999883

argG in bacteria, ARG1 in Saccharomyces cerevisiae. There is a very unusual clustering in the alignment, with a deep split between one cohort of E. coli, H. influenzae, and Streptomyces, and the other cohort of eukaryotes, archaea, and the rest of the eubacteria.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.01  E-value=5.1e-09  Score=87.56  Aligned_cols=83  Identities=17%  Similarity=0.306  Sum_probs=63.5

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------chHHHHHcCCC--CCCCeEEEEeCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------QKEYAKQKLQL--GSFPTILFFPKHSS  338 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------~~~l~~~~~~v--~~~Pt~~~~~~g~~  338 (361)
                      +|+||++||++|+++.|.+++++++++   +.++.|+.+..            +..+. ..|++  .++|+.++++..+.
T Consensus        73 lV~FwaswCp~C~~e~P~L~~l~~~~g---~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~-~~~g~~~~~iPttfLId~~G~  148 (181)
T PRK13728         73 VVLFMQGHCPYCHQFDPVLKQLAQQYG---FSVFPYTLDGQGDTAFPEALPAPPDVMQ-TFFPNIPVATPTTFLVNVNTL  148 (181)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHHHHcC---CEEEEEEeCCCCCCCCceEecCchhHHH-HHhCCCCCCCCeEEEEeCCCc
Confidence            778999999999999999999999983   67777776633            12355 68885  69999999955543


Q ss_pred             Ce-eecCCCCCCHHHHHHHHHHh
Q 018045          339 KP-IKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       339 ~~-~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +. ..+.| ..+.++|.+.|+++
T Consensus       149 i~~~~~~G-~~~~~~L~~~I~~l  170 (181)
T PRK13728        149 EALPLLQG-ATDAAGFMARMDTV  170 (181)
T ss_pred             EEEEEEEC-CCCHHHHHHHHHHH
Confidence            32 24566 78999998888764

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.01  E-value=2.2e-09  Score=83.37  Aligned_cols=69  Identities=26%  Similarity=0.479  Sum_probs=59.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v~  325 (361)
                      .+++++|.||++||++|+...+.+.++.+.++..++.++.|+++.+                      ...+. +.|++.
T Consensus        18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   96 (116)
T cd02966          18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELA-KAYGVR   96 (116)
T ss_pred             CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHH-HhcCcC
Confidence            4789999999999999999999999999999754799999999872                      14677 899999


Q ss_pred             CCCeEEEEeCCC
Q 018045          326 SFPTILFFPKHS  337 (361)
Q Consensus       326 ~~Pt~~~~~~g~  337 (361)
                      ++|+++++++.+
T Consensus        97 ~~P~~~l~d~~g  108 (116)
T cd02966          97 GLPTTFLIDRDG  108 (116)
T ss_pred             ccceEEEECCCC
Confidence            999999996444

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional

Probab=99.01  E-value=2.6e-09  Score=99.50  Aligned_cols=157  Identities=14%  Similarity=0.074  Sum_probs=99.7

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HHHH--hcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----ALVR--SKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~----~~~~--~~~   82 (361)
                      ++|+|++|||.||+++ +++.+.+.++..+++++.   .+..+.++++++++|+++.++.-......    .++.  ..|
T Consensus         6 ~kVlVa~SGGvDSsv~a~lL~~~G~eV~av~~~~~---~~e~~~a~~va~~LGI~~~vvd~~~~f~~~v~~~~~~~~~~G   82 (362)
T PRK14664          6 KRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW---GDEPQDARELAARMGIEHYVADERVPFKDTIVKNFIDEYRQG   82 (362)
T ss_pred             CEEEEEEeCCHHHHHHHHHHHHcCCcEEEEEecCc---chhHHHHHHHHHHhCCCEEEEeChHHHHHHHHHHhHHHHHcC
Confidence            6899999999999876 778888888999999874   23446799999999999888754432111    1111  122


Q ss_pred             CCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCc----CCCCCe--EEEeeC
Q 018045           83 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLE----GGVGSL--VKWNPV  154 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~----~~~~~~--~~~~Pi  154 (361)
                      ..+   .....|....|...+.+++.  +.+.++||+.+.-.. .-....+..........+    ...+..  -.+.||
T Consensus        83 ~tp---npC~~Cn~~iKf~~L~~~A~~~G~~~IATGHyar~~~-~~~~~~l~~g~D~~kDQsyfl~~l~~~~l~~~ifPL  158 (362)
T PRK14664         83 RTP---NPCVMCNPLFKFRMLIEWADKLGCAWIATGHYSRLEE-RNGHIYIVAGDDDKKDQSYFLWRLGQDILRRCIFPL  158 (362)
T ss_pred             CCC---CCchhhhHHHHHHHHHHHHHHcCCCEEEECCcccccc-CCCeEEEEEcCCCcchHHHHHHhcCHHHHhHHhccC
Confidence            211   12334555677777777665  667999999986542 211111222211100000    000111  258999


Q ss_pred             ccCcHHHHHHHHHhCCCCC
Q 018045          155 ANVKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       155 ~~W~~~dv~~yi~~~~lp~  173 (361)
                      .+++.+||.+|++++|||.
T Consensus       159 g~~~K~evr~~A~~~gl~~  177 (362)
T PRK14664        159 GNYTKQTVREYLREKGYEA  177 (362)
T ss_pred             ccCCHHHHHHHHHHcCCCC
Confidence            9999999999999999976

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.01  E-value=1.7e-09  Score=114.55  Aligned_cols=89  Identities=18%  Similarity=0.238  Sum_probs=72.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc---C------------------------CCchHHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---D------------------------GDQKEYAKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~---~------------------------~~~~~l~~~  320 (361)
                      .++++||+|||+||++|+.+.|.|++++++|++.++.++.|.+   +                        .+ ..+. +
T Consensus       419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~-~~~~-~  496 (1057)
T PLN02919        419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGD-MYLW-R  496 (1057)
T ss_pred             CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCc-hHHH-H
Confidence            5899999999999999999999999999999875688887742   1                        12 4577 7


Q ss_pred             cCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          321 KLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+|.++|+++++ ++|+. ...+.| ....+.|.++|+++
T Consensus       497 ~~~V~~iPt~ilid~~G~i-v~~~~G-~~~~~~l~~~l~~~  535 (1057)
T PLN02919        497 ELGVSSWPTFAVVSPNGKL-IAQLSG-EGHRKDLDDLVEAA  535 (1057)
T ss_pred             hcCCCccceEEEECCCCeE-EEEEec-ccCHHHHHHHHHHH
Confidence            8999999999999 56663 334444 78889999998764

>PRK13820 argininosuccinate synthase; Provisional

Probab=99.00  E-value=4.2e-09  Score=98.90  Aligned_cols=149  Identities=14%  Similarity=0.197  Sum_probs=93.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH----HHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----ALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~----~~~~~~~   82 (361)
                      ++|+|+||||.||+++ +++.+. +. ++.++++|+|. .++-.+.++++++.+|++++++.......+    ..+..+.
T Consensus         3 ~kVvvA~SGGvDSsvll~lL~e~~g~~~Viav~vd~g~-~~~e~~~a~~~a~~lGi~~~vvd~~eef~~~~i~~~i~~n~   81 (394)
T PRK13820          3 KKVVLAYSGGLDTSVCVPLLKEKYGYDEVITVTVDVGQ-PEEEIKEAEEKAKKLGDKHYTIDAKEEFAKDYIFPAIKANA   81 (394)
T ss_pred             CeEEEEEeCcHHHHHHHHHHHHhcCCCEEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEeCHHHHHHHHHHHHHHhCc
Confidence            5899999999999877 777664 65 89999999995 356678899999999999988754422221    1122211


Q ss_pred             CCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeecc--CCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc--
Q 018045           83 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKD--QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN--  156 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~--Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~--  156 (361)
                      ...-+.... ..|......-+.++.+  +.+++++|....  |...-|..+...              +.--+.|+.+  
T Consensus        82 ~~~gYpl~~-~~cR~~i~~~l~e~A~e~G~~~IA~G~t~~gnDq~rfe~~~~a~--------------~l~viaP~re~~  146 (394)
T PRK13820         82 LYEGYPLGT-ALARPLIAEKIVEVAEKEGASAIAHGCTGKGNDQLRFEAVFRAS--------------DLEVIAPIRELN  146 (394)
T ss_pred             cccCCcCcH-HHHHHHHHHHHHHHHHHcCCCEEEECCCCCcchHHHHHHhhHhh--------------cCeeeCchhccC
Confidence            000000011 1233333334444443  668999999554  421012222111              1224578888  


Q ss_pred             CcHHHHHHHHHhCCCCCC
Q 018045          157 VKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp~~  174 (361)
                      ++.+||.+|++++|||+.
T Consensus       147 ltK~ei~~ya~~~gip~~  164 (394)
T PRK13820        147 LTREWEIEYAKEKGIPVP  164 (394)
T ss_pred             CCHHHHHHHHHHcCCCCC
Confidence            599999999999999984

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=6.6e-10  Score=92.83  Aligned_cols=88  Identities=22%  Similarity=0.401  Sum_probs=76.5

Q ss_pred             CCCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC-
Q 018045          248 SQNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG-  325 (361)
Q Consensus       248 ~~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~-  325 (361)
                      ...+..+ +.+.+++.+. .+..+.|+|.|||.|.+.|+.+.|.+.+++.+|..+.+.|++||+... ++.+ .+|+|. 
T Consensus       123 pe~ikyf~~~q~~deel~-rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-pd~a-~kfris~  199 (265)
T KOG0914|consen  123 PETIKYFTNMQLEDEELD-RNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-PDVA-AKFRISL  199 (265)
T ss_pred             chheeeecchhhHHHHhc-cCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-cChH-Hheeecc
Confidence            3567778 5555666554 566779999999999999999999999999999988899999999999 9999 999885 


Q ss_pred             -----CCCeEEEEeCCCC
Q 018045          326 -----SFPTILFFPKHSS  338 (361)
Q Consensus       326 -----~~Pt~~~~~~g~~  338 (361)
                           .+||+++|++|++
T Consensus       200 s~~srQLPT~ilFq~gkE  217 (265)
T KOG0914|consen  200 SPGSRQLPTYILFQKGKE  217 (265)
T ss_pred             CcccccCCeEEEEccchh
Confidence                 6899999999986

>PRK00509 argininosuccinate synthase; Provisional

Probab=98.99  E-value=4.1e-09  Score=99.02  Aligned_cols=150  Identities=20%  Similarity=0.269  Sum_probs=95.4

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHH----HHHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEV----QALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~----~~~~~~~~   82 (361)
                      ++++|+||||.||+++ +++.+. +.++..+++|+|..  +-++.++++++++|+ +++++.-.....    ...+..+.
T Consensus         3 ~kVvva~SGGlDSsvla~~l~e~lG~eViavt~d~Gq~--~dle~a~~~A~~lGi~~~~viD~~~ef~~~~i~~~i~~n~   80 (399)
T PRK00509          3 KKVVLAYSGGLDTSVIIKWLKETYGCEVIAFTADVGQG--EELEPIREKALKSGASEIYVEDLREEFVRDYVFPAIRANA   80 (399)
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEecCCH--HHHHHHHHHHHHcCCCeEEEEcCHHHHHHHhHHHHHHhCh
Confidence            5899999999999877 777774 88899999999975  567889999999997 455543222111    12222211


Q ss_pred             CC-CCCccchhchhhccccHHHHHHHc--cCCEEEEeeec--cCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           83 LF-SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRK--DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        83 ~~-~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~--~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      .. ..+......|-..+ ..-+.++.+  +.+++++|...  +|-  .|....+...++          ..-.+.|+.+|
T Consensus        81 ~y~g~ypl~~~lcr~~i-~~~l~~~A~~~G~~~IA~G~t~kGnDq--~rf~~g~~al~p----------el~VisPlre~  147 (399)
T PRK00509         81 LYEGKYPLGTALARPLI-AKKLVEIARKEGADAVAHGCTGKGNDQ--VRFELGIAALAP----------DLKVIAPWREW  147 (399)
T ss_pred             HhcCcCCCchHHHHHHH-HHHHHHHHHHcCCCEEEeCCCcCCCCH--HHHHHHHHHhCC----------CCeeecchhhc
Confidence            10 00101112222222 444444443  67799999987  553  343222222222          23468999999


Q ss_pred             ---cHHHHHHHHHhCCCCCC
Q 018045          158 ---KGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       158 ---~~~dv~~yi~~~~lp~~  174 (361)
                         +.+|+.+|.+++|||+.
T Consensus       148 ~~~tK~eir~~A~~~Gipv~  167 (399)
T PRK00509        148 DLKSREELIAYAEEHGIPIP  167 (399)
T ss_pred             CCCCHHHHHHHHHHcCCCCC
Confidence               99999999999999984

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.99  E-value=2.7e-09  Score=83.48  Aligned_cols=68  Identities=16%  Similarity=0.258  Sum_probs=51.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---C----------------chHHHHHcCCCCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---D----------------QKEYAKQKLQLGSFP  328 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---~----------------~~~l~~~~~~v~~~P  328 (361)
                      ++++++|+||++||++|+.+.|.++++++.+++ ++.++.+.-+.   .                +.++. +.|++..+|
T Consensus        20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~P   97 (114)
T cd02967          20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELG-MAYQVSKLP   97 (114)
T ss_pred             CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHH-hhcCCCCcC
Confidence            378999999999999999999999999988866 57666552111   1                03455 577888888


Q ss_pred             eEEEEeCCC
Q 018045          329 TILFFPKHS  337 (361)
Q Consensus       329 t~~~~~~g~  337 (361)
                      +.+++++.+
T Consensus        98 ~~~vid~~G  106 (114)
T cd02967          98 YAVLLDEAG  106 (114)
T ss_pred             eEEEECCCC
Confidence            888886433

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)

Probab=98.98  E-value=7.2e-09  Score=92.67  Aligned_cols=148  Identities=17%  Similarity=0.122  Sum_probs=95.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC--CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC-CC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG--RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL-FS   85 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~--~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~-~~   85 (361)
                      ++++|++|||.||+++ +|+.+..  .++..++++++...++..+.++.+++.+|++.+++..... +..+...... ..
T Consensus        24 ~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~~i~i~~~-~~~~~~~~~~~~~  102 (248)
T cd00553          24 KGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHVNIDIDPA-VEAFLALLGESGG  102 (248)
T ss_pred             CCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEeccHHH-HHHHHHHHhhhcc
Confidence            6899999999999877 7887753  5788999999987789999999999999999888754432 2222111100 00


Q ss_pred             CCccchhch--hhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           86 FYEDGHQEC--CRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        86 ~~~~~~~~c--c~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                      ....+...|  |..+++.-+..+.+...  ++.||. ++|.. .  ...     .+++      .+...++||.+.+..+
T Consensus       103 ~~~~~~~~~n~~ar~R~~~Ly~~A~~~~~~vlgTgn-~~E~~-~--G~~-----t~~g------d~~~~i~Pl~~l~K~e  167 (248)
T cd00553         103 SELEDLALGNIQARLRMVILYALANKLGGLVLGTGN-KSELL-L--GYF-----TKYG------DGAADINPIGDLYKTQ  167 (248)
T ss_pred             cchhhHHHHhhHHHHHHHHHHHHHHhcCCEEEcCCc-HhHHH-h--CCe-----eccC------CcccCccccCCCcHHH
Confidence            011111122  44555555666555443  444554 34432 1  110     1111      1234689999999999


Q ss_pred             HHHHHHhCCCCC
Q 018045          162 IWNFLRTMDVPI  173 (361)
Q Consensus       162 v~~yi~~~~lp~  173 (361)
                      |+.+.+..++|.
T Consensus       168 V~~la~~~~ip~  179 (248)
T cd00553         168 VRELARYLGVPE  179 (248)
T ss_pred             HHHHHHHHCchH
Confidence            999999999875

The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .

>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase

Probab=98.98  E-value=4.5e-09  Score=98.79  Aligned_cols=153  Identities=16%  Similarity=0.212  Sum_probs=92.5

Q ss_pred             EEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHH----HHHHHhcCCC
Q 018045           12 IAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEV----QALVRSKGLF   84 (361)
Q Consensus        12 i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~~----~~~~~~~~~~   84 (361)
                      |+|+||||.||+++ +++.+. +.++..+++|+|.. .+..+.+++.++.+|++ ++++.-.....    ...+......
T Consensus         1 Vvva~SGGlDSsvll~~l~e~~~~eV~av~~d~Gq~-~~~~e~a~~~a~~lG~~~~~viD~~~ef~~~~i~~~i~an~~~   79 (385)
T cd01999           1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADVGQP-EEEIEAIEEKALKLGAKKHVVVDLREEFVEDYIFPAIQANALY   79 (385)
T ss_pred             CEEEecCCHHHHHHHHHHHHhCCCeEEEEEEECCCc-chhHHHHHHHHHHcCCCEEEEeccHHHHHHHhhHHHHHhCccc
Confidence            58999999999866 777665 44899999999964 33358999999999996 66664332211    1112211100


Q ss_pred             -CCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC---c
Q 018045           85 -SFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV---K  158 (361)
Q Consensus        85 -~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W---~  158 (361)
                       ..+. ....+|+.+...-+.++.+  +.+++++|....-....|.........          +.+-.+.|+.+|   +
T Consensus        80 ~g~y~-l~t~l~R~~i~~~l~~~A~~~Ga~~VA~G~t~~gnDq~rf~~~~~al~----------pel~ViaPlre~~~~s  148 (385)
T cd01999          80 EGTYP-LGTALARPLIAKALVEVAKEEGADAVAHGCTGKGNDQVRFELAFYALN----------PDLKIIAPWRDWEFLS  148 (385)
T ss_pred             cCCCc-CCcHhHHHHHHHHHHHHHHHcCCCEEEeCCCCCCCcHHHHHHHHHhhC----------CCCEEEcchhhhhcCC
Confidence             0000 0111233333233333333  678999999864221123222211111          234578999999   9


Q ss_pred             HHHHHHHHHhCCCCCCcc
Q 018045          159 GNDIWNFLRTMDVPINSL  176 (361)
Q Consensus       159 ~~dv~~yi~~~~lp~~~l  176 (361)
                      .+|+..|.+++|||+..-
T Consensus       149 r~ev~~~A~~~Gip~~~~  166 (385)
T cd01999         149 REEEIEYAEEHGIPVPVT  166 (385)
T ss_pred             HHHHHHHHHHcCCCCccc
Confidence            999999999999998543

The Argininosuccinate synthase is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate . In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterized by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI

Probab=98.96  E-value=4.9e-09  Score=98.98  Aligned_cols=143  Identities=13%  Similarity=0.158  Sum_probs=93.2

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC-cHHHHHHHHHHHHHh---CC--cEEEEcCChHHHHHHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL-NPETYRFFDEVEKHF---GI--RIEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~---g~--~i~~~~p~~~~~~~~~~~~~   82 (361)
                      ++++|++|||.||+++ +++.+.+.++.++|+|++.. .++..+.++++++++   +.  ++..+  +.......+....
T Consensus       173 ~kvlvllSGGiDS~vaa~ll~krG~~V~av~~~~~~~~~~~~~~~v~~l~~~l~~~~~~~~l~~v--~~~~~~~~i~~~~  250 (371)
T TIGR00342       173 GKVLALLSGGIDSPVAAFMMMKRGCRVVAVHFFNEPAASEKAREKVERLANSLNETGGSVKLYVF--DFTDVQEEIIHII  250 (371)
T ss_pred             CeEEEEecCCchHHHHHHHHHHcCCeEEEEEEeCCCCccHHHHHHHHHHHHHHhhcCCCceEEEE--eCHHHHHHHHhcC
Confidence            6899999999999877 88888888999999999854 357888999999988   43  44444  2222222221111


Q ss_pred             CCCCCccchhchhhccccHHHH---HHHc--cCCEEEEeeeccCCcc-CccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           83 LFSFYEDGHQECCRVRKVRPLR---RALK--GLRAWITGQRKDQSPG-TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~---~~~~--~~~~~i~G~R~~Es~~-~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                             ....+|..+|..-+.   +...  +.+.++||...+|-.. .+.++......          ....-++||+.
T Consensus       251 -------~~~~~cv~cRr~m~~~a~~~A~~~g~~~I~tG~~l~d~asqtl~nl~~i~~~----------~~~~I~rPLi~  313 (371)
T TIGR00342       251 -------PEGYTCVLCRRMMYKAASKVAEKEGCLAIVTGESLGQVASQTLENLRVIQAV----------SNTPILRPLIG  313 (371)
T ss_pred             -------CCCceeHhHHHHHHHHHHHHHHHcCCCEEEEccChHhhhccHHHHHHHHhcc----------CCCCEEeCCCC
Confidence                   112355555553332   2222  6789999999998521 12222221100          12335679999


Q ss_pred             CcHHHHHHHHHhCCC
Q 018045          157 VKGNDIWNFLRTMDV  171 (361)
Q Consensus       157 W~~~dv~~yi~~~~l  171 (361)
                      ++.+||.++.++.|.
T Consensus       314 ~~K~EIi~~a~~iG~  328 (371)
T TIGR00342       314 MDKEEIIELAKEIGT  328 (371)
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999999993

The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.96  E-value=1.9e-10  Score=97.41  Aligned_cols=101  Identities=21%  Similarity=0.444  Sum_probs=91.7

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..+..++.+|+.+++.     .-+++.|+||||+.|+...|.|+.++.--.+-+|.+++||+..+ +.|. -+|-|...|
T Consensus        24 s~~~~~~eenw~~~l~-----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-pgLs-GRF~vtaLp   96 (248)
T KOG0913|consen   24 SKLTRIDEENWKELLT-----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-PGLS-GRFLVTALP   96 (248)
T ss_pred             ceeEEecccchhhhhc-----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-cccc-eeeEEEecc
Confidence            3789999999999774     78999999999999999999999998776656899999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ||+-.++|.  ...|.| .++.++++.|++.
T Consensus        97 tIYHvkDGe--Frrysg-aRdk~dfisf~~~  124 (248)
T KOG0913|consen   97 TIYHVKDGE--FRRYSG-ARDKNDFISFEEH  124 (248)
T ss_pred             eEEEeeccc--cccccC-cccchhHHHHHHh
Confidence            999999998  788888 8999999999863

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.96  E-value=2.6e-09  Score=102.64  Aligned_cols=104  Identities=17%  Similarity=0.321  Sum_probs=78.1

Q ss_pred             ecCcc-cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHH-HHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCC
Q 018045          253 TLNRT-GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV-ELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSF  327 (361)
Q Consensus       253 ~l~~~-~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~-~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~  327 (361)
                      .++.. ..++.+. ..++|+|+|+|||+||-.||.+++..- +.....+-.++...++|.++++   .++. ++|++-++
T Consensus       458 ~~s~~~~L~~~la-~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lL-k~~~~~G~  535 (569)
T COG4232         458 PISPLAELDQALA-EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALL-KRLGVFGV  535 (569)
T ss_pred             ccCCHHHHHHHHH-hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHH-HHcCCCCC
Confidence            34444 6677665 223459999999999999999999753 3333333346999999999885   4566 79999999


Q ss_pred             CeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |++++|. +|++ +....| ..+++.+.+++++.
T Consensus       536 P~~~ff~~~g~e-~~~l~g-f~~a~~~~~~l~~~  567 (569)
T COG4232         536 PTYLFFGPQGSE-PEILTG-FLTADAFLEHLERA  567 (569)
T ss_pred             CEEEEECCCCCc-CcCCcc-eecHHHHHHHHHHh
Confidence            9999997 5554 334555 89999999999875

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=98.95  E-value=4.1e-09  Score=84.14  Aligned_cols=75  Identities=13%  Similarity=0.149  Sum_probs=58.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----C---------------------chHHHHHc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----D---------------------QKEYAKQK  321 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----~---------------------~~~l~~~~  321 (361)
                      .+++++|+||++||++|+...|.++++.+++++.++.++.|+.+.     .                     +..+. +.
T Consensus        22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~-~~  100 (126)
T cd03012          22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATW-RA  100 (126)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHH-HH
Confidence            478999999999999999999999999999986578888886521     1                     13466 67


Q ss_pred             CCCCCCCeEEEEeCCCCCeeec
Q 018045          322 LQLGSFPTILFFPKHSSKPIKY  343 (361)
Q Consensus       322 ~~v~~~Pt~~~~~~g~~~~~~~  343 (361)
                      |++.++|+.+++++.+.....+
T Consensus       101 ~~v~~~P~~~vid~~G~v~~~~  122 (126)
T cd03012         101 YGNQYWPALYLIDPTGNVRHVH  122 (126)
T ss_pred             hCCCcCCeEEEECCCCcEEEEE
Confidence            9999999999996443323333

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PLN00200 argininosuccinate synthase; Provisional

Probab=98.95  E-value=5.9e-09  Score=98.12  Aligned_cols=148  Identities=20%  Similarity=0.295  Sum_probs=92.8

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcE-EEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRI-EYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i-~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      ++++|+||||.||+++ +++.+. +.++..+++|+|. -.+-++.++++++++|++. +++ .-.   +++.+..-.+..
T Consensus         6 ~kVvva~SGGlDSsvla~~L~e~~G~eViav~id~Gq-~~~el~~a~~~A~~lGi~~~~v~-dl~---~ef~~~~i~p~i   80 (404)
T PLN00200          6 NKVVLAYSGGLDTSVILKWLRENYGCEVVCFTADVGQ-GIEELEGLEAKAKASGAKQLVVK-DLR---EEFVRDYIFPCL   80 (404)
T ss_pred             CeEEEEEeCCHHHHHHHHHHHHhhCCeEEEEEEECCC-ChHHHHHHHHHHHHcCCCEEEEE-eCH---HHHHHhhcCHHH
Confidence            5899999999999877 777664 7789999999996 3467888999999999974 444 211   122222211111


Q ss_pred             Cccchhchhhcccc---HHH-----HHHHc--cCCEEEEeeec--cCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045           87 YEDGHQECCRVRKV---RPL-----RRALK--GLRAWITGQRK--DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV  154 (361)
Q Consensus        87 ~~~~~~~cc~~~K~---~pl-----~~~~~--~~~~~i~G~R~--~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi  154 (361)
                      .......-|+.+|.   +|+     .++.+  +.++++.|...  +|-  .|....+...++          ..-.+.|+
T Consensus        81 ~~Na~ye~~Y~~~tsl~Rp~i~~~lv~~A~~~G~~~VahG~tgkGnDq--~rf~~~~~al~p----------el~ViaPl  148 (404)
T PLN00200         81 RANAIYEGKYLLGTSMARPLIAKAMVDIAKEVGADAVAHGATGKGNDQ--VRFELTFFALNP----------ELKVVAPW  148 (404)
T ss_pred             HcCCcccceeccccchhhHHHHHHHHHHHHHcCCCEEEeCCcCCCCcH--HHHHHHHHHhCC----------CCeeeCch
Confidence            11112122344444   221     12222  66789989986  442  333222222221          23468999


Q ss_pred             ccCc---HHHHHHHHHhCCCCCC
Q 018045          155 ANVK---GNDIWNFLRTMDVPIN  174 (361)
Q Consensus       155 ~~W~---~~dv~~yi~~~~lp~~  174 (361)
                      .+|.   .+|+.+|.+++|||+.
T Consensus       149 re~~~~~r~e~~~~A~~~Gipv~  171 (404)
T PLN00200        149 REWDIKGREDLIEYAKKHNIPVP  171 (404)
T ss_pred             hhcCCCCHHHHHHHHHHcCCCCC
Confidence            9995   9999999999999874

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.94  E-value=9.9e-09  Score=87.87  Aligned_cols=87  Identities=17%  Similarity=0.262  Sum_probs=61.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-------------------chHHHHHcCCCCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-------------------QKEYAKQKLQLGSFP  328 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-------------------~~~l~~~~~~v~~~P  328 (361)
                      .+++++|+||++||++|+.+.|.+.++.+...   +.++.|..+..                   ..++. +.|++..+|
T Consensus        73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~y~v~~~P  148 (189)
T TIGR02661        73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIG-MAFQVGKIP  148 (189)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHH-HhccCCccc
Confidence            57899999999999999999999999987653   33444432210                   14677 789999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +.+++++.+.  +.+.+...+.+.+.+.++.+
T Consensus       149 ~~~lID~~G~--I~~~g~~~~~~~le~ll~~l  178 (189)
T TIGR02661       149 YGVLLDQDGK--IRAKGLTNTREHLESLLEAD  178 (189)
T ss_pred             eEEEECCCCe--EEEccCCCCHHHHHHHHHHH
Confidence            9988864442  33344335667787777754

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>smart00594 UAS UAS domain

Probab=98.93  E-value=1.3e-08  Score=80.76  Aligned_cols=100  Identities=12%  Similarity=0.136  Sum_probs=75.2

Q ss_pred             cccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeE
Q 018045          256 RTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTI  330 (361)
Q Consensus       256 ~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~  330 (361)
                      ..+|++.++.. .++|+++|+|+++||+.|+.+....   .++.+.++. ++.+..+|++..+ ..++ .+|++.++|++
T Consensus        13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~~~eg~~l~-~~~~~~~~P~~   90 (122)
T smart00594       13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVDTSEGQRVS-QFYKLDSFPYV   90 (122)
T ss_pred             eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCCChhHHHHH-HhcCcCCCCEE
Confidence            35666665433 3588999999999999999998864   667777776 7888889987653 5788 89999999999


Q ss_pred             EEEeCCC-C---CeeecCCCCCCHHHHHHHH
Q 018045          331 LFFPKHS-S---KPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       331 ~~~~~g~-~---~~~~~~~~~~~~~~l~~~i  357 (361)
                      +++.... .   ..+....|..++++|.++|
T Consensus        91 ~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       91 AIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             EEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            9994432 1   1333334588999998876

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.93  E-value=1e-08  Score=80.99  Aligned_cols=77  Identities=14%  Similarity=0.182  Sum_probs=52.8

Q ss_pred             cHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEE
Q 018045          258 GMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF  333 (361)
Q Consensus       258 ~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~  333 (361)
                      +|++.++. ..++|+++|+|+++||++|+.|...+   .++.+..+. ++..+.++.+..+..+.  ..+ .++||++|+
T Consensus        11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~-~Fv~V~l~~d~td~~~~--~~g-~~vPtivFl   86 (130)
T cd02960          11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE-DFIMLNLVHETTDKNLS--PDG-QYVPRIMFV   86 (130)
T ss_pred             hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh-CeEEEEEEeccCCCCcC--ccC-cccCeEEEE
Confidence            45555433 23699999999999999999999975   456666654 56666777664312222  223 689999999


Q ss_pred             eCCCC
Q 018045          334 PKHSS  338 (361)
Q Consensus       334 ~~g~~  338 (361)
                      +....
T Consensus        87 d~~g~   91 (130)
T cd02960          87 DPSLT   91 (130)
T ss_pred             CCCCC
Confidence            55443

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PRK04527 argininosuccinate synthase; Provisional

Probab=98.92  E-value=9.9e-09  Score=96.15  Aligned_cols=147  Identities=17%  Similarity=0.234  Sum_probs=98.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHH--------
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVR--------   79 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~--------   79 (361)
                      ++++|+||||-||+++ +++.+.+.++..+++|.|....+-++.++++++++|+ ++.++.-.....++++.        
T Consensus         3 ~kVvVA~SGGvDSSvla~~l~e~G~~Viavt~d~gq~~~~El~~a~~~A~~lG~~~~~viD~~eef~e~vi~p~i~aNa~   82 (400)
T PRK04527          3 KDIVLAFSGGLDTSFCIPYLQERGYAVHTVFADTGGVDAEERDFIEKRAAELGAASHVTVDGGPAIWEGFVKPLVWAGEG   82 (400)
T ss_pred             CcEEEEEcCChHHHHHHHHHHHcCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCeEEEecCHHHHHHHHHHHHHhcchh
Confidence            5899999999999777 7887788889999999998767778889999999998 57776554433333332        


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeee--ccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQR--KDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R--~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      ..|..+.+.     |.+-.|..-+.+..+  +.+++++|..  .+|-..-|..+.... +            .-.+.|+.
T Consensus        83 y~G~yPl~~-----~nR~~~~~~l~e~A~~~G~~~IA~G~tgkgnDq~rfrpg~~Al~-e------------l~ViaPlr  144 (400)
T PRK04527         83 YQGQYPLLV-----SDRYLIVDAALKRAEELGTRIIAHGCTGMGNDQVRFDLAVKALG-D------------YQIVAPIR  144 (400)
T ss_pred             hcCCCCCcc-----ccHHHHHHHHHHHHHHCCCCEEEecCcCCCCchhhccHHHHHhh-c------------CCccchHH
Confidence            112211111     222234444444443  6789999997  444311233333222 1            12578999


Q ss_pred             cC------cHHHHHHHHHhCCCCCC
Q 018045          156 NV------KGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       156 ~W------~~~dv~~yi~~~~lp~~  174 (361)
                      +|      +.+|.-+|+++||||+.
T Consensus       145 e~~~~k~~~R~~~i~ya~~~gipv~  169 (400)
T PRK04527        145 EIQKEHTQTRAYEQKYLEERGFGVR  169 (400)
T ss_pred             HhcCcccccHHHHHHHHHHcCCCCC
Confidence            98      56777999999999994

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.91  E-value=3.7e-09  Score=77.62  Aligned_cols=64  Identities=25%  Similarity=0.493  Sum_probs=50.6

Q ss_pred             CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          267 HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       267 ~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      .++++++|+|+++||++|+.|...+   .++.+.+.. ++.++.||.+.. ....  ++...++|++++++
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~~~-~~~~--~~~~~~~P~~~~ld   81 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVDDE-DPNA--QFDRQGYPTFFFLD   81 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETTTH-HHHH--HHHHCSSSEEEEEE
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcCCC-ChhH--HhCCccCCEEEEeC
Confidence            3799999999999999999999987   566665665 799999999877 3322  12226699999986

...

>PRK13980 NAD synthetase; Provisional

Probab=98.91  E-value=1.7e-08  Score=91.14  Aligned_cols=152  Identities=16%  Similarity=0.178  Sum_probs=94.6

Q ss_pred             HHHhHhC-CcEEEEecchHHHHHH-HHHHHc-C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH
Q 018045            3 RALEKFG-NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV   78 (361)
Q Consensus         3 ~~~~~~~-~~i~vs~SGGKDS~~l-~l~~~~-~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~   78 (361)
                      ...+.++ ++++|++|||+||+++ +|+.+. + .++..++++++...++..+.++.+++.+|++++++.-.. ....+.
T Consensus        23 ~~v~~~g~~~vvv~lSGGiDSsv~a~l~~~~~~~~~v~av~~~~~~~~~~~~~~a~~la~~lgi~~~~i~i~~-~~~~~~  101 (265)
T PRK13980         23 EEVEKAGAKGVVLGLSGGIDSAVVAYLAVKALGKENVLALLMPSSVSPPEDLEDAELVAEDLGIEYKVIEITP-IVDAFF  101 (265)
T ss_pred             HHHHHcCCCcEEEECCCCHHHHHHHHHHHHHhCccceEEEEeeCCCCCHHHHHHHHHHHHHhCCCeEEEECHH-HHHHHH
Confidence            3345555 7899999999999777 777764 3 578899999998778899999999999999988774332 122222


Q ss_pred             HhcCCCCCCccchhchhhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           79 RSKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        79 ~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                      ...  +.........-|..+++..+..+.+...  ++.||-+ +|..  . ..-     ..++      .+..-++||.+
T Consensus       102 ~~~--~~~~~~~~~n~~aR~R~~~L~~~A~~~g~lvlgTgn~-sE~~--~-G~~-----t~~g------D~~~~l~Pl~~  164 (265)
T PRK13980        102 SAI--PDADRLRVGNIMARTRMVLLYDYANRENRLVLGTGNK-SELL--L-GYF-----TKYG------DGAVDLNPIGD  164 (265)
T ss_pred             HHc--ccccchHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCH-hHHH--h-CCc-----cCCC------CcccCcccCCC
Confidence            111  1000001122244444555555555443  4445533 3321  1 110     1111      01224899999


Q ss_pred             CcHHHHHHHHHhCCCC
Q 018045          157 VKGNDIWNFLRTMDVP  172 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp  172 (361)
                      ++..||++..+..|+|
T Consensus       165 l~K~eV~~la~~lgip  180 (265)
T PRK13980        165 LYKTQVRELARHLGVP  180 (265)
T ss_pred             CcHHHHHHHHHHHCch
Confidence            9999999999999986

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.88  E-value=1.6e-08  Score=82.79  Aligned_cols=77  Identities=25%  Similarity=0.423  Sum_probs=62.0

Q ss_pred             CCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCC-
Q 018045          268 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG-  325 (361)
Q Consensus       268 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~-  325 (361)
                      .+++++|.||++ ||++|+...|.+.++++.+++.++.++.|..+.+.                    ..+. +.|++. 
T Consensus        27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~  105 (146)
T PF08534_consen   27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALA-KALGVTI  105 (146)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHH-HHTTCEE
T ss_pred             CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHH-HHhCCcc
Confidence            689999999999 99999999999999999988767999888876541                    4577 789988 


Q ss_pred             --------CCCeEEEEeCCCCCeeecCC
Q 018045          326 --------SFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       326 --------~~Pt~~~~~~g~~~~~~~~~  345 (361)
                              ++|+++++...++......|
T Consensus       106 ~~~~~~~~~~P~~~lId~~G~V~~~~~g  133 (146)
T PF08534_consen  106 MEDPGNGFGIPTTFLIDKDGKVVYRHVG  133 (146)
T ss_dssp             ECCTTTTSSSSEEEEEETTSBEEEEEES
T ss_pred             ccccccCCeecEEEEEECCCEEEEEEeC
Confidence                    99999998655543333333

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK01565 thiamine biosynthesis protein ThiI; Provisional

Probab=98.85  E-value=1.9e-08  Score=95.77  Aligned_cols=143  Identities=12%  Similarity=0.152  Sum_probs=93.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-CCcHHHHHHHHHHHHHhC-----CcEEEEcCChHHHHHHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHFG-----IRIEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-~~~pet~~~v~~~~~~~g-----~~i~~~~p~~~~~~~~~~~~~   82 (361)
                      +++++++|||.||+++ +++.+.+.++.++|+++. +..+...+.+.+++++++     +++.++.-...  ...+... 
T Consensus       177 gkvvvllSGGiDS~vaa~l~~k~G~~v~av~~~~~~~~~~~~~~~~~~~a~~l~~~~~~i~~~vv~~~~~--~~~i~~~-  253 (394)
T PRK01565        177 GKALLLLSGGIDSPVAGYLAMKRGVEIEAVHFHSPPYTSERAKEKVIDLARILAKYGGRIKLHVVPFTEI--QEEIKKK-  253 (394)
T ss_pred             CCEEEEECCChhHHHHHHHHHHCCCEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEEEECHHH--HHHHhhc-
Confidence            5899999999999877 888888888888888763 444667778888888874     78877743321  1112211 


Q ss_pred             CCCCCccchhchhhccccHHH---HHHHc--cCCEEEEeeeccCCc-cCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           83 LFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl---~~~~~--~~~~~i~G~R~~Es~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                      .      ..+.+|..+|..-+   .....  +.++++||...+|-. ..+..+..+...          ....-++||+.
T Consensus       254 ~------~~~~~~v~~Rr~~~~~a~~~A~~~g~~~IvtG~~~~d~~sqt~~~l~~i~~~----------~~~~V~rPLig  317 (394)
T PRK01565        254 V------PESYLMTLMRRFMMRIADKIAEKRGALAIVTGESLGQVASQTLESMYAINAV----------TNLPVLRPLIG  317 (394)
T ss_pred             C------CCceEEEeHHHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHHHhhc----------cCcEEEECCCC
Confidence            1      11234444444333   23222  677999999988852 123333222111          12345799999


Q ss_pred             CcHHHHHHHHHhCCC
Q 018045          157 VKGNDIWNFLRTMDV  171 (361)
Q Consensus       157 W~~~dv~~yi~~~~l  171 (361)
                      ++..||.++.++.|+
T Consensus       318 ~~K~EI~~lAr~iG~  332 (394)
T PRK01565        318 MDKEEIIEIAKEIGT  332 (394)
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999999995

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.83  E-value=4.8e-08  Score=85.79  Aligned_cols=92  Identities=15%  Similarity=0.218  Sum_probs=67.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---hHHHHHcCC--------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKLQ--------------  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~~~~--------------  323 (361)
                      .++++||+||++||++|+...|.++++.+++++.++.++.|+++.       ..   ..++.++++              
T Consensus        98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~  177 (236)
T PLN02399         98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP  177 (236)
T ss_pred             CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence            478999999999999999999999999999987679999999742       10   111101111              


Q ss_pred             --------------------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 --------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 --------------------v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                          |...|+.++++..++....+.| ..+.++|.+.|+++
T Consensus       178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G-~~~~~~le~~I~~l  233 (236)
T PLN02399        178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP-TTSPFQIEKDIQKL  233 (236)
T ss_pred             hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence                                1235888888555544556665 68999999999876

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.82  E-value=3.1e-08  Score=85.41  Aligned_cols=44  Identities=11%  Similarity=0.190  Sum_probs=40.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .++++||+|||+||++|+...|.++++.+++++.++.++.|+++
T Consensus        38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~   81 (199)
T PTZ00056         38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTS   81 (199)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecch
Confidence            47899999999999999999999999999998767999999874

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=98.78  E-value=2.1e-08  Score=89.56  Aligned_cols=106  Identities=18%  Similarity=0.210  Sum_probs=78.6

Q ss_pred             CCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..|.+|+. +.|-+.+....++..|||+||.+.++.|..|...|..||.+|..  ++|++|..+.. + +. .+|.+..+
T Consensus       125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~~-~-~~-~~f~~~~L  199 (265)
T PF02114_consen  125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASKC-P-AS-ENFPDKNL  199 (265)
T ss_dssp             -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECGC-C-TT-TTS-TTC-
T ss_pred             ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhcc-C-cc-cCCcccCC
Confidence            46888854 77888776444566899999999999999999999999999986  99999999876 4 56 79999999


Q ss_pred             CeEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045          328 PTILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       328 Pt~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ||+++|++|...     .....|...+..+|..||.+
T Consensus       200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~  236 (265)
T PF02114_consen  200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE  236 (265)
T ss_dssp             SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred             CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence            999999998742     12333456788999999875

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR03573 WbuX N-acetyl sugar amidotransferase

Probab=98.78  E-value=4.2e-08  Score=91.77  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=75.9

Q ss_pred             cEEEEecchHHHHHH-HHH-HHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045           11 DIAIAFSGAEDVALI-EYA-HLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE   88 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~-~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~   88 (361)
                      .++|++||||||+++ +++ .+.+.++.++++|.|..-+...+.++++++++|++++++.++...+..+.... +.. ..
T Consensus        61 D~iV~lSGGkDSs~la~ll~~~~gl~~l~vt~~~~~~~e~~~~n~~~~~~~lgvd~~~i~~d~~~~~~l~~~~-~~~-~~  138 (343)
T TIGR03573        61 DCIIGVSGGKDSTYQAHVLKKKLGLNPLLVTVDPGWNTELGVKNLNNLIKKLGFDLHTITINPETFRKLQRAY-FKK-VG  138 (343)
T ss_pred             CEEEECCCCHHHHHHHHHHHHHhCCceEEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHH-Hhc-cC
Confidence            499999999999877 676 44677777799999988788889999999999999999988765443333221 000 01


Q ss_pred             cchhchhhccccHHHHHHHc-cCCEEEEeeeccC
Q 018045           89 DGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQ  121 (361)
Q Consensus        89 ~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~E  121 (361)
                      .....|...+...+.+.+.+ +..++++|..++|
T Consensus       139 ~pc~~c~~~~~~~l~~~A~~~gi~~Il~G~~~dE  172 (343)
T TIGR03573       139 DPEWPQDHAIFASVYQVALKFNIPLIIWGENIAE  172 (343)
T ss_pred             CCchhhhhHHHHHHHHHHHHhCCCEEEeCCCHHH
Confidence            12223444444444444444 5779999999997

This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an

>PLN02412 probable glutathione peroxidase

Probab=98.74  E-value=1e-07  Score=79.86  Aligned_cols=91  Identities=14%  Similarity=0.177  Sum_probs=66.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------CchHH----HHHcCC-------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQKEY----AKQKLQ-------------  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~~~l----~~~~~~-------------  323 (361)
                      .++++||+||++||++|+...|.++++.+++++.++.++.|+++.       ...++    + ++++             
T Consensus        28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~-~~~~~~fpvl~~~d~~g  106 (167)
T PLN02412         28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVC-TRFKAEFPIFDKVDVNG  106 (167)
T ss_pred             CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHH-HccCCCCceEeEEeeCC
Confidence            468999999999999999999999999999997679999998742       10111    1 1111             


Q ss_pred             ---------------------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 ---------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 ---------------------v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                           |...|+.++++..++....+.| ..+.++|...|+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g-~~~~~~l~~~i~~~  163 (167)
T PLN02412        107 KNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAP-TTSPLKIEKDIQNL  163 (167)
T ss_pred             CCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence                                 3345888888544443445555 78899999888765

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.73  E-value=9.7e-08  Score=78.89  Aligned_cols=92  Identities=18%  Similarity=0.226  Sum_probs=65.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--------CCc--hHHHHHcCCC-------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--------GDQ--KEYAKQKLQL-------------  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--------~~~--~~l~~~~~~v-------------  324 (361)
                      .++++||.|||+||++|+...|.++++.+.+++.++.++.|++.        ..+  ...+++++++             
T Consensus        21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~  100 (153)
T TIGR02540        21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS  100 (153)
T ss_pred             CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence            57889999999999999999999999999998768999999862        110  2222111111             


Q ss_pred             -------------CCCCe----EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 -------------GSFPT----ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 -------------~~~Pt----~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                   .++|+    .++++..+.....+.| ..+.++|.+.|+++
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g-~~~~~~l~~~i~~l  152 (153)
T TIGR02540       101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRP-EEPVEEIRPEITAL  152 (153)
T ss_pred             CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECC-CCCHHHHHHHHHHh
Confidence                         13775    6666443333455555 68999999998876

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome

Probab=98.72  E-value=2.9e-08  Score=86.01  Aligned_cols=179  Identities=16%  Similarity=0.165  Sum_probs=88.6

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCCh-HHH--HHHHHhc-CCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDA-VEV--QALVRSK-GLF   84 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~-~~~--~~~~~~~-~~~   84 (361)
                      +++|.||||.||+++ +++.+.+.++..+++|.|.....-++.++++++++|+ +.+++.-.. ..+  ..+.... .++
T Consensus         1 Kavvl~SGG~DSt~~l~~~~~~~~~v~al~~~YGq~~~~El~~a~~i~~~l~v~~~~~i~l~~~~~~~~s~L~~~~~~v~   80 (209)
T PF06508_consen    1 KAVVLFSGGLDSTTCLYWAKKEGYEVYALTFDYGQRHRRELEAAKKIAKKLGVKEHEVIDLSFLKEIGGSALTDDSIEVP   80 (209)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHH-SEEEEEEEESSSTTCHHHHHHHHHHHHCT-SEEEEEE-CHHHHCSCHHHHHTT----
T ss_pred             CEEEEeCCCHHHHHHHHHHHHcCCeEEEEEEECCCCCHHHHHHHHHHHHHhCCCCCEEeeHHHHHhhCCCcccCCCcCCc
Confidence            578999999999877 7888888889999999998788889999999999999 877775431 000  0111111 011


Q ss_pred             C-------CCccchhchhhcc-ccHHHHHHHccCCEEEEeeeccCCccCccCCCce-ecCCCCcCCcCCCCCeEEEeeCc
Q 018045           85 S-------FYEDGHQECCRVR-KVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVV-QVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        85 ~-------~~~~~~~~cc~~~-K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~-~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      .       .+..--..-..++ =+...-....+.+.+++|+.++|........+.+ +.-.+.... ....++--..|+.
T Consensus        81 ~~~~~~~~~~~t~vP~RN~l~lsiAa~~A~~~g~~~i~~G~~~~D~~~ypDc~~~F~~~~~~~~~~-~~~~~v~i~~P~~  159 (209)
T PF06508_consen   81 EEEYSEESIPSTYVPFRNGLFLSIAASYAESLGAEAIYIGVNAEDASGYPDCRPEFIDAMNRLLNL-GEGGPVRIETPLI  159 (209)
T ss_dssp             --------------TTHHHHHHHHHHHHHHHHT-SEEEE---S-STT--GGGSHHHHHHHHHHHHH-HHTS--EEE-TTT
T ss_pred             ccccccCCCCceEEecCcHHHHHHHHHHHHHCCCCEEEEEECcCccCCCCCChHHHHHHHHHHHHh-cCCCCEEEEecCC
Confidence            0       0000000001111 0000001111667899999999952222211111 000000000 0012455679999


Q ss_pred             cCcHHHHHHHHHhCCCCCCccccCCCC---CCCCCCCC
Q 018045          156 NVKGNDIWNFLRTMDVPINSLHSQGYI---SIGCEPCT  190 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp~~~lY~~g~~---~~GC~~Ct  190 (361)
                      +++..||+....+.++|+..-|.+.-.   ..+|-.|+
T Consensus       160 ~~tK~eiv~~~~~lg~~~~~T~SCy~~~~~~~~CG~C~  197 (209)
T PF06508_consen  160 DLTKAEIVKLGVELGVPLELTWSCYRGGEKGKHCGRCP  197 (209)
T ss_dssp             T--HHHHHHHHHHTTHHHHH-B-STTS--BTTTTSSSH
T ss_pred             CCCHHHHHHHHHHcCCCHHHccCCCCCCCCCCCCCCCH
Confidence            999999999999999887666655222   24565553

In Rhizobium meliloti (Sinorhizobium meliloti), a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA [, ]. In Arthrobacter viscosus, the homologous gene is designated alu1 and is associated with an aluminum tolerance phenotype. When expressed in Escherichia coli, it conferred aliminium tolerance []. The entry also contains the gene queC, which is responsible for the conversion of GTP to 7-cyano-7-deazaguanine (preQ0). The biosynthesis of hypermodified tRNA nucleoside queuosine only occurs in eubacteria. It occupies the wobble position for all known tRNAs that are specific for Asp, Asn, His or Tyr [].; PDB: 3BL5_B 2PG3_A.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.71  E-value=1.6e-07  Score=79.13  Aligned_cols=90  Identities=21%  Similarity=0.338  Sum_probs=69.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------------chHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------------~~~l~~  319 (361)
                      .++++||+||++||+.|....+.+.++.+++++.++.|+.|..+..                            +..++ 
T Consensus        24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-  102 (171)
T cd02969          24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA-  102 (171)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH-
Confidence            5789999999999999999999999999999855799999987641                            13456 


Q ss_pred             HcCCCCCCCeEEEEeCCCCCeeecCC----------CCCCHHHHHHHHHHh
Q 018045          320 QKLQLGSFPTILFFPKHSSKPIKYPS----------ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~~~Pt~~~~~~g~~~~~~~~~----------~~~~~~~l~~~i~~~  360 (361)
                      +.|++...|++++++.+++ .+ +.+          +..+.+++.+.|+++
T Consensus       103 ~~~~v~~~P~~~lid~~G~-v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~  151 (171)
T cd02969         103 KAYGAACTPDFFLFDPDGK-LV-YRGRIDDSRPGNDPPVTGRDLRAALDAL  151 (171)
T ss_pred             HHcCCCcCCcEEEECCCCe-EE-EeecccCCcccccccccHHHHHHHHHHH
Confidence            6889999999999964443 22 221          134667888888764

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=4.6e-08  Score=78.11  Aligned_cols=139  Identities=16%  Similarity=0.268  Sum_probs=87.1

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH---HHHHhcCCCCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ---ALVRSKGLFSF   86 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~---~~~~~~~~~~~   86 (361)
                      ++++.|||||||.+. -++.+.+.++.+|.++.|..  .+.+++++.++.+|++..+++-+..-.+   +++.+.|.|. 
T Consensus         2 ~v~vLfSGGKDSSLaA~iL~klgyev~LVTvnFGv~--d~~k~A~~tA~~lgF~h~vl~Ldr~ile~A~em~iedg~P~-   78 (198)
T COG2117           2 DVYVLFSGGKDSSLAALILDKLGYEVELVTVNFGVL--DSWKYARETAAILGFPHEVLQLDREILEDAVEMIIEDGYPR-   78 (198)
T ss_pred             ceEEEecCCCchhHHHHHHHHhCCCcEEEEEEeccc--cchhhHHHHHHHhCCCcceeccCHHHHHHHHHHHHhcCCCc-
Confidence            578999999999988 46677899999999999963  4678899999999999999876643222   2333444322 


Q ss_pred             CccchhchhhccccHHHHHHHc-cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHH
Q 018045           87 YEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNF  165 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~y  165 (361)
                        ...+   ++.+ ..++.... .++.+..|.|+|+-.   .++...+..+ .+    ..-++-.++||......-|...
T Consensus        79 --~aIq---~iH~-~alE~~A~r~~~~iaDGTRRDDrv---P~ls~~~~qS-LE----dR~nv~Yi~PL~G~G~kti~~L  144 (198)
T COG2117          79 --NAIQ---YIHE-MALEALASREVDRIADGTRRDDRV---PKLSRSEAQS-LE----DRLNVQYIRPLLGLGYKTIRRL  144 (198)
T ss_pred             --hHHH---HHHH-HHHHHHHHHHHHHHcCCCcccccC---ccccHHHHhh-HH----HhcCceeecccccccHHHHHHH
Confidence              2222   1111 22222222 577899999999963   2222211110 00    0124556777777766666554


Q ss_pred             H
Q 018045          166 L  166 (361)
Q Consensus       166 i  166 (361)
                      .
T Consensus       145 v  145 (198)
T COG2117         145 V  145 (198)
T ss_pred             H
Confidence            4

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=98.67  E-value=1.1e-07  Score=92.91  Aligned_cols=144  Identities=16%  Similarity=0.185  Sum_probs=93.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCc-HH-HHHHHHHHHHHhC--Cc--EEEEcCChHHHHHHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN-PE-TYRFFDEVEKHFG--IR--IEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~-pe-t~~~v~~~~~~~g--~~--i~~~~p~~~~~~~~~~~~~   82 (361)
                      +++++.+|||+||+++ +++.+.+.++..+|+|.|... .+ ..+.++.++++|+  .+  +.++.-. ........  .
T Consensus       178 gk~lvllSGGiDS~va~~~~~krG~~v~~l~f~~g~~~~~~~~~~~a~~l~~~~~~~~~~~l~~v~~~-~~~~~i~~--~  254 (482)
T PRK01269        178 EDVLSLISGGFDSGVASYMLMRRGSRVHYCFFNLGGAAHEIGVKQVAHYLWNRYGSSHRVRFISVDFE-PVVGEILE--K  254 (482)
T ss_pred             CeEEEEEcCCchHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHHHHHHHHhCccCCceEEEEecH-HHHHHHHh--c
Confidence            5899999999999877 888888889999999999643 22 5677788888886  33  5444311 11112211  1


Q ss_pred             CCCCCccchhchhhccccHHH---HHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           83 LFSFYEDGHQECCRVRKVRPL---RRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl---~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      .      ....||-.+|+.-+   +++..  +.++++||...+|-. .............        .+..-.+||+.+
T Consensus       255 ~------~~~~~~~v~rR~ml~iA~~~A~~~ga~~IvtG~~l~dva-sqtl~nl~~~~~~--------~~~~v~rPLi~~  319 (482)
T PRK01269        255 V------DDGQMGVVLKRMMLRAASKVAERYGIQALVTGEALGQVS-SQTLTNLRLIDNV--------TDTLILRPLIAM  319 (482)
T ss_pred             C------CCceecHHHHHHHHHHHHHHHHHcCCCEEEECcChHhhh-hHHHHHHHhhhhh--------cCCceecCCcCC
Confidence            1      12346656665444   33332  678999999999952 2221111111110        123345999999


Q ss_pred             cHHHHHHHHHhCCC
Q 018045          158 KGNDIWNFLRTMDV  171 (361)
Q Consensus       158 ~~~dv~~yi~~~~l  171 (361)
                      ++.||..+.+..|+
T Consensus       320 dK~EIi~~a~~ig~  333 (482)
T PRK01269        320 DKEDIIDLAREIGT  333 (482)
T ss_pred             CHHHHHHHHHHhCC
Confidence            99999999999997

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily

Probab=98.67  E-value=8.5e-08  Score=82.15  Aligned_cols=131  Identities=15%  Similarity=0.093  Sum_probs=85.8

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcH------HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNP------ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~p------et~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +++++|||||||+++ +++.+.+.++..+++++.....      .-.+.++.+++.+|+++.++.-... ..++.     
T Consensus         1 kv~v~~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgipl~~i~~~~~-~e~~~-----   74 (194)
T cd01994           1 KVVALISGGKDSCYALYRALEEGHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIPLIRIEISGE-EEDEV-----   74 (194)
T ss_pred             CEEEEecCCHHHHHHHHHHHHcCCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCcEEEEeCCCC-chHHH-----
Confidence            578999999999877 8888888888878777654322      2467889999999999887642211 01110     


Q ss_pred             CCCCccchhchhhccccHHHHHHH-ccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI  162 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv  162 (361)
                                  ..++ .-+.+.. ++.++++.|-..+|.  +|......-..          -++..+.||..-..+++
T Consensus        75 ------------~~l~-~~l~~~~~~g~~~vv~G~i~sd~--~~~~~e~~~~~----------~gl~~~~PLW~~~~~~l  129 (194)
T cd01994          75 ------------EDLK-ELLRKLKEEGVDAVVFGAILSEY--QRTRVERVCER----------LGLEPLAPLWGRDQEEL  129 (194)
T ss_pred             ------------HHHH-HHHHHHHHcCCCEEEECccccHH--HHHHHHHHHHH----------cCCEEEecccCCCHHHH
Confidence                        0000 0111111 157899999999996  45443322111          15668999999999998


Q ss_pred             HHHHHhCCCC
Q 018045          163 WNFLRTMDVP  172 (361)
Q Consensus       163 ~~yi~~~~lp  172 (361)
                      ..=+...|+.
T Consensus       130 l~e~~~~g~~  139 (194)
T cd01994         130 LREMIEAGFK  139 (194)
T ss_pred             HHHHHHcCCe
Confidence            8777776653

Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.66  E-value=1.1e-07  Score=80.16  Aligned_cols=85  Identities=9%  Similarity=-0.014  Sum_probs=61.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEE------EEEEcCCC----------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV------GKFRADGD----------------------------  313 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~------~~vd~~~~----------------------------  313 (361)
                      .+|.++|+|||.||++|+...|.++++++.    ++.+      ..||.++.                            
T Consensus        58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~----~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~  133 (184)
T TIGR01626        58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA----KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDD  133 (184)
T ss_pred             CCCEEEEEEEecCCChhhccchHHHHHHHc----CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECC
Confidence            599999999999999999999999999643    2444      55665532                            


Q ss_pred             chHHHHHcCCCCCCCeE-EEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          314 QKEYAKQKLQLGSFPTI-LFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       314 ~~~l~~~~~~v~~~Pt~-~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      +..+. ..|++.++|+. ++++..++....+.| ..+.+++.+.+.
T Consensus       134 ~g~v~-~~~gv~~~P~T~fVIDk~GkVv~~~~G-~l~~ee~e~~~~  177 (184)
T TIGR01626       134 KGAVK-NAWQLNSEDSAIIVLDKTGKVKFVKEG-ALSDSDIQTVIS  177 (184)
T ss_pred             cchHH-HhcCCCCCCceEEEECCCCcEEEEEeC-CCCHHHHHHHHH
Confidence            02355 68899999877 677544443555555 678877766554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34

Probab=98.63  E-value=1.4e-07  Score=87.75  Aligned_cols=159  Identities=14%  Similarity=0.106  Sum_probs=89.4

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC---------cHHHHHHHHHHHHHhCCcEEEEcCChHH----HHH
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL---------NPETYRFFDEVEKHFGIRIEYMFPDAVE----VQA   76 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~---------~pet~~~v~~~~~~~g~~i~~~~p~~~~----~~~   76 (361)
                      +|+|+.|||-||++. .|+.+.+.++.-+|+.+...         .++-++.++++++++|++++++.-....    +..
T Consensus         2 kV~vamSGGVDSsvaA~LLk~~G~~V~Gv~m~~~~~~~~~~~~c~~~~d~~~a~~va~~LgIp~~v~d~~~~f~~~Vi~~   81 (356)
T PF03054_consen    2 KVLVAMSGGVDSSVAAALLKEQGYDVIGVTMRNWDEEDESGKSCCSEEDIEDARRVAEKLGIPHYVVDLREEFWEEVIEP   81 (356)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHCT-EEEEEEEE-SS-SSSHH-HHHHHHHHHHHHHHHHHHT--EEEEETHHHHHHHTHHH
T ss_pred             eEEEEccCCHHHHHHHHHHHhhcccceEEEEEEeccccccCCCCCchhhHHHHHHHHHhcCCCEEEEChHHHHHHHHHHH
Confidence            799999999999877 88889999988888877754         2456888999999999999988544321    122


Q ss_pred             HHHh--cCCCCCCccchhchhhccccHHHHHHHcc---CCEEEEeeeccCCc---cCccCCCceecCC----CCcCCcCC
Q 018045           77 LVRS--KGLFSFYEDGHQECCRVRKVRPLRRALKG---LRAWITGQRKDQSP---GTRSEIPVVQVDP----VFEGLEGG  144 (361)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~~---~~~~i~G~R~~Es~---~~R~~~~~~~~~~----~~~~~~~~  144 (361)
                      +++.  .|..  | .+.-.|....|...|.+++..   .+.++||+=+.=..   ..+..+.. ..|.    .|--..-.
T Consensus        82 f~~~Y~~G~T--P-NPcv~CN~~IKF~~l~~~a~~~~g~d~iATGHYAri~~~~~~~~~~L~r-~~D~~KDQSYfL~~l~  157 (356)
T PF03054_consen   82 FLDEYRKGRT--P-NPCVLCNRFIKFGALLEYADEGLGADYIATGHYARIEKDEKNGRYRLLR-GADPKKDQSYFLSRLP  157 (356)
T ss_dssp             HHHHHHTT-------HHHHHHHHTTTTHHHHHHHTTTT-SEEE---SEEEEEES-TTEEEEEE--SSTTC--GGGGTT--
T ss_pred             HHHHHhcCCC--C-ChHHhhchhhhHHHHHHHHHhhcCCCeeccceeEEEEeeccCCceEEEe-cCCCCCCceEEEEecC
Confidence            2222  3331  1 233467888999888877764   67999998332211   01111100 1111    11100000


Q ss_pred             CC-CeEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045          145 VG-SLVKWNPVANVKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       145 ~~-~~~~~~Pi~~W~~~dv~~yi~~~~lp~  173 (361)
                      .. -..-+.||-+++.+||.+..++.|||.
T Consensus       158 ~~~L~~~~FPLG~~~K~eVR~iA~~~gl~~  187 (356)
T PF03054_consen  158 QEQLSRLIFPLGELTKEEVREIAREAGLPV  187 (356)
T ss_dssp             HHHHCCEE-TCCCS-HHHHHHHHHHCT-TT
T ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHhcCCcc
Confidence            00 012489999999999999999999983

; GO: 0016740 transferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 2DET_A 2DER_A 2DEU_A 2HMA_A.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.62  E-value=1.7e-07  Score=66.70  Aligned_cols=69  Identities=19%  Similarity=0.367  Sum_probs=53.8

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHSSKPIKYPSERR  348 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~  348 (361)
                      +..|+++||++|+.+.+.+++.       ++.+..+|++.+ ..    +. +.+++.++|++++.  |+  .  ..|  .
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~-~~~~~~~~-~~~~~~~vP~~~~~--~~--~--~~g--~   64 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTSK-------GIAFEEIDVEKD-SAAREEVL-KVLGQRGVPVIVIG--HK--I--IVG--F   64 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-------CCeEEEEeccCC-HHHHHHHH-HHhCCCcccEEEEC--CE--E--Eee--C
Confidence            5789999999999999888651       588999999877 43    45 67899999999985  43  2  333  5


Q ss_pred             CHHHHHHHHH
Q 018045          349 DVDSLMAFVD  358 (361)
Q Consensus       349 ~~~~l~~~i~  358 (361)
                      +.+.|.++|+
T Consensus        65 ~~~~i~~~i~   74 (74)
T TIGR02196        65 DPEKLDQLLE   74 (74)
T ss_pred             CHHHHHHHhC
Confidence            7788888874

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.60  E-value=1.8e-07  Score=77.17  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=39.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .+++++|+|||+||+ |+...|.++++.+++++.++.++.|+++
T Consensus        21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~   63 (152)
T cd00340          21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN   63 (152)
T ss_pred             CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence            478999999999999 9999999999999998667999999764

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []

Probab=98.60  E-value=3.4e-07  Score=82.31  Aligned_cols=103  Identities=21%  Similarity=0.342  Sum_probs=74.9

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhH------HHHHHHHHH-hcCCCeEEEEEEcCCCchHHHHHc
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAME------GSYVELADK-LAGNGVKVGKFRADGDQKEYAKQK  321 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~------p~~~~la~~-~~~~~v~~~~vd~~~~~~~l~~~~  321 (361)
                      ..|..||.+||+++++   +.+..+|+||.|-- .-+...      ..+-+|+++ +...++.|+.||..++ ..++ ++
T Consensus        34 DRVi~LneKNfk~~lK---kyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd-~klA-KK  107 (383)
T PF01216_consen   34 DRVIDLNEKNFKRALK---KYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKD-AKLA-KK  107 (383)
T ss_dssp             --CEEE-TTTHHHHHH---H-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTT-HHHH-HH
T ss_pred             cceEEcchhHHHHHHH---hhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHH-HHHH-Hh
Confidence            5699999999999987   88899999998863 333332      223344444 4446899999999999 9999 99


Q ss_pred             CCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          322 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       322 ~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++...+++.+|++|.  .+.|.| .++++.|++||-.+
T Consensus       108 Lgv~E~~SiyVfkd~~--~IEydG-~~saDtLVeFl~dl  143 (383)
T PF01216_consen  108 LGVEEEGSIYVFKDGE--VIEYDG-ERSADTLVEFLLDL  143 (383)
T ss_dssp             HT--STTEEEEEETTE--EEEE-S---SHHHHHHHHHHH
T ss_pred             cCccccCcEEEEECCc--EEEecC-ccCHHHHHHHHHHh
Confidence            9999999999999999  899997 89999999999754

It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.59  E-value=2.7e-07  Score=71.42  Aligned_cols=67  Identities=33%  Similarity=0.610  Sum_probs=61.0

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHHHcCC--CCCCCeEEEEeCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQ--LGSFPTILFFPKHSS  338 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~--v~~~Pt~~~~~~g~~  338 (361)
                      ++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. .. ..+. ..|+  +..+|+++++.++..
T Consensus        32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~-~~~~-~~~~~~~~~~p~~~~~~~~~~  101 (127)
T COG0526          32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDEN-PDLA-AEFGVAVRSIPTLLLFKDGKE  101 (127)
T ss_pred             CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCC-hHHH-HHHhhhhccCCeEEEEeCcch
Confidence            78999999999999999999999999999986 6899999997 67 7888 8899  999999999988874

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=98.59  E-value=1.2e-07  Score=76.37  Aligned_cols=69  Identities=16%  Similarity=0.365  Sum_probs=57.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCc------------------------hHHHHHc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQ------------------------KEYAKQK  321 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~------------------------~~l~~~~  321 (361)
                      .+|.|.++|.|.||++|+.+-|++.++.+..+..  .+.++-|+.|.+.                        ++++ ++
T Consensus        32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~-~k  110 (157)
T KOG2501|consen   32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLS-EK  110 (157)
T ss_pred             CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHH-Hh
Confidence            5799999999999999999999999999998872  3777777766542                        4677 89


Q ss_pred             CCCCCCCeEEEEeCCC
Q 018045          322 LQLGSFPTILFFPKHS  337 (361)
Q Consensus       322 ~~v~~~Pt~~~~~~g~  337 (361)
                      |.|.++|++++.+..+
T Consensus       111 y~v~~iP~l~i~~~dG  126 (157)
T KOG2501|consen  111 YEVKGIPALVILKPDG  126 (157)
T ss_pred             cccCcCceeEEecCCC
Confidence            9999999999995544

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=1.2e-06  Score=69.87  Aligned_cols=92  Identities=18%  Similarity=0.344  Sum_probs=71.7

Q ss_pred             hhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc---------------hHHHHHcCCCC
Q 018045          264 RLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ---------------KEYAKQKLQLG  325 (361)
Q Consensus       264 ~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~---------------~~l~~~~~~v~  325 (361)
                      .....++..++.|-++.|+.|..|+..+   .++.+.+.+ ++.++.+|+...+               ++|+ +.|.|+
T Consensus        37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa-~kf~vr  114 (182)
T COG2143          37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNISYSKPVLFKVGDKEEKMSTEELA-QKFAVR  114 (182)
T ss_pred             hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEeccCcceEeecCceeeeecHHHHH-HHhccc
Confidence            3345799999999999999999999876   556666776 7888888875431               5899 999999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      ++||+++|+..++......| ...++++...++
T Consensus       115 stPtfvFfdk~Gk~Il~lPG-Y~ppe~Fl~vlk  146 (182)
T COG2143         115 STPTFVFFDKTGKTILELPG-YMPPEQFLAVLK  146 (182)
T ss_pred             cCceEEEEcCCCCEEEecCC-CCCHHHHHHHHH
Confidence            99999999655443444454 888888877665

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.54  E-value=8.3e-07  Score=77.22  Aligned_cols=85  Identities=24%  Similarity=0.327  Sum_probs=69.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----------CchHHHHHcCCCCCCCeEEEEeCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----------DQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----------~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      .++.-|++||.+.|+.|+.+.|++..+++.+   ++.+..|++|.           + ..++ ++++|..+|++++...+
T Consensus       119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~~~fp~~~~~-~g~~-~~l~v~~~Pal~Lv~~~  193 (215)
T PF13728_consen  119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPIPSFPNPRPD-PGQA-KRLGVKVTPALFLVNPN  193 (215)
T ss_pred             hhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCCcCCCCCCCC-HHHH-HHcCCCcCCEEEEEECC
Confidence            3778899999999999999999999999999   36777777763           3 7888 89999999999999776


Q ss_pred             CCCeeecCCCCCCHHHHHHHH
Q 018045          337 SSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      .........|..+.++|.+-|
T Consensus       194 ~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  194 TKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             CCeEEEEeeecCCHHHHHHhh
Confidence            644444444578999987643

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.53  E-value=4.6e-07  Score=61.94  Aligned_cols=61  Identities=39%  Similarity=0.765  Sum_probs=51.4

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH--HcCCCCCCCeEEEEeCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKH  336 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~v~~~Pt~~~~~~g  336 (361)
                      ++.|+++||++|+.+.+.+.++ +.... ++.+..+|++.. .....  ..+++..+|+++++..|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~P~~~~~~~~   63 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-ALLNK-GVKFEAVDVDED-PALEKELKRYGVGGVPTLVVFGPG   63 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-HhhCC-CcEEEEEEcCCC-hHHhhHHHhCCCccccEEEEEeCC
Confidence            5789999999999999999999 33333 799999999998 66552  27899999999999877

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=1.7e-06  Score=79.49  Aligned_cols=167  Identities=13%  Similarity=0.055  Sum_probs=107.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCC-------CcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGR-------LNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QAL   77 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~-------~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~   77 (361)
                      .+|+|++|||-||.|. .|+.+.+.+|..+|+....       ..++-++.++++++++|+++.++.-...-+    ..+
T Consensus         4 ~kV~v~mSGGVDSSVaA~lLk~QGyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGIp~~~vdf~~~y~~~V~~~f   83 (356)
T COG0482           4 KKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGIPLYVVDFEKEFWNKVFEYF   83 (356)
T ss_pred             cEEEEEccCCHHHHHHHHHHHHcCCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCCceEEEchHHHHHHHHHHHH
Confidence            5899999999998776 8888889998888876654       345677789999999999999885443322    233


Q ss_pred             HHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCcc--CCCc-e--ecCCCCcC-CcCCCCCeE
Q 018045           78 VRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRS--EIPV-V--QVDPVFEG-LEGGVGSLV  149 (361)
Q Consensus        78 ~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~--~~~~-~--~~~~~~~~-~~~~~~~~~  149 (361)
                      ...++.-..| .+.-.|....|-..+..++.  +.+.++||+=+-..+ ...  .+.. .  .-|-+|-- ......--.
T Consensus        84 ~~~Y~~G~TP-NPci~CN~~iKF~~~l~~a~~lgad~iATGHYar~~~-~~~~~~l~r~~D~~KDQsYfL~~~~~~ql~~  161 (356)
T COG0482          84 LAEYKAGKTP-NPCILCNKEIKFKALLDYAKELGADYIATGHYARQRE-DEGIELLLRGVDLNKDQSYFLYALSQEQLER  161 (356)
T ss_pred             HHHHhCCCCC-CcchhcCHHHHHHHHHHHHHHcCCCeEEEeeeEeeec-CCcccccccCCCcccchhheecccCHHHHhh
Confidence            3333221112 12335679999988888877  557899997544432 111  1100 0  01111110 000000012


Q ss_pred             EEeeCccCcHHHHHHHHHhCCCCCCcccc
Q 018045          150 KWNPVANVKGNDIWNFLRTMDVPINSLHS  178 (361)
Q Consensus       150 ~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~  178 (361)
                      .+.||-+++..+|.....+.+||...-=|
T Consensus       162 ~lFPlG~l~K~evR~iA~~~gL~~a~Kkd  190 (356)
T COG0482         162 LLFPLGDLEKLEVRPIAAEKGLPTAKKKD  190 (356)
T ss_pred             ccccCCCCCHHHHHHHHHHcCCCccCccc
Confidence            37899999999999999999998865543

>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]

Probab=98.51  E-value=6.4e-07  Score=76.81  Aligned_cols=170  Identities=17%  Similarity=0.237  Sum_probs=103.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE   88 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~   88 (361)
                      .+.+|-||||-||+++ +++.+.+..+..++.|-|.-...-++.++++++++|++.+++.-+..  .+    .+...+-+
T Consensus         3 ~kavvl~SGG~DStt~l~~a~~~~~ev~alsfdYGQrh~~Ele~A~~iak~lgv~~~iid~~~~--~~----~~~saLtd   76 (222)
T COG0603           3 KKAVVLLSGGLDSTTCLAWAKKEGYEVHALTFDYGQRHRKELEAAKELAKKLGVPHHIIDVDLL--GE----IGGSALTD   76 (222)
T ss_pred             ceEEEEccCChhHHHHHHHHHhcCCEEEEEEeeCCCCcHHHHHHHHHHHHHcCCCeEEechhHH--hh----cCCCcCcC
Confidence            4678999999999866 88999889999999999977799999999999999999988743321  11    11000000


Q ss_pred             c-----chhchhhccc--cHHHHHHH-----------ccCCEEEEeeeccCCccCccC-CC----ceecCCCCcCCcCCC
Q 018045           89 D-----GHQECCRVRK--VRPLRRAL-----------KGLRAWITGQRKDQSPGTRSE-IP----VVQVDPVFEGLEGGV  145 (361)
Q Consensus        89 ~-----~~~~cc~~~K--~~pl~~~~-----------~~~~~~i~G~R~~Es~~~R~~-~~----~~~~~~~~~~~~~~~  145 (361)
                      .     .....-...+  ..|.+..+           .+.+.+++|+...|.. .=.. .+    .++.--.+    +..
T Consensus        77 ~~~~vp~~~~~~~~~p~t~VP~RN~iflsiA~~~Ae~~g~~~I~~Gv~~~D~s-gYPDcrpefi~a~~~~~~l----~~~  151 (222)
T COG0603          77 DSIDVPKYEFAEEEIPATFVPARNLIFLSIAAAYAEALGADAIIIGVNEEDFS-GYPDCRPEFIEALNEALNL----GTE  151 (222)
T ss_pred             CCccccccccccccCcceEeccccHHHHHHHHHHHHHcCCCeEEEEecccccC-CCCCCCHHHHHHHHHHHHh----hcc
Confidence            0     0000000000  11222111           1567899999999973 2110 00    00000000    011


Q ss_pred             CCeE-EEeeCccCcHHHHHHHHHhCCCCCCccccC--CCCCCCCCCCC
Q 018045          146 GSLV-KWNPVANVKGNDIWNFLRTMDVPINSLHSQ--GYISIGCEPCT  190 (361)
Q Consensus       146 ~~~~-~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~--g~~~~GC~~Ct  190 (361)
                      .++. -..||.+++..++|.--.+.|+|+..=+.+  |-..-+|=-|.
T Consensus       152 ~~~~~i~aPl~~l~Ka~iv~l~~elg~~~~~T~SCY~g~~~~~CG~C~  199 (222)
T COG0603         152 KGVRIIHAPLMELTKAEIVKLADELGVPLELTWSCYNGGEGDHCGECE  199 (222)
T ss_pred             CCccEEeCCeeeccHHHHHHHHHHhCCcchhceEEeCCCCCCCCCCCH
Confidence            2233 379999999999999999999998776543  22222565554

>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases

Probab=98.49  E-value=4.6e-07  Score=69.52  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=34.4

Q ss_pred             EEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--cHHHHHHHHH
Q 018045           12 IAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--NPETYRFFDE   55 (361)
Q Consensus        12 i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--~pet~~~v~~   55 (361)
                      ++|++|||+||+++ +++.+.+.++.++|+|.+..  .++..+++++
T Consensus         1 v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   47 (103)
T cd01986           1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTVDHGISPRLEDAKEIAKE   47 (103)
T ss_pred             CEEEEeCcHHHHHHHHHHHHhCCCEEEEEEcCCCcccHHHHHHHHHH
Confidence            57999999999877 88888877899999999976  3444444444

The domain forms a apha/beta/apha fold which binds to Adenosine group..

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=98.47  E-value=9.8e-07  Score=71.51  Aligned_cols=88  Identities=10%  Similarity=0.109  Sum_probs=65.5

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~~  326 (361)
                      .+++++|.|| +.||+.|....+.+.++.+.+.+.++.++.|..+..                    +..+. +.|++..
T Consensus        22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~  100 (140)
T cd03017          22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLA-KAYGVWG  100 (140)
T ss_pred             CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHH-HHhCCcc
Confidence            4789999999 589999999999999999998765788888876543                    14566 6788888


Q ss_pred             C---------CeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          327 F---------PTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       327 ~---------Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      .         |+++++++.++....+.| .....++.+-+
T Consensus       101 ~~~~~~~~~~p~~~lid~~G~v~~~~~g-~~~~~~~~~~~  139 (140)
T cd03017         101 EKKKKYMGIERSTFLIDPDGKIVKVWRK-VKPKGHAEEVL  139 (140)
T ss_pred             ccccccCCcceeEEEECCCCEEEEEEec-CCccchHHHHh
Confidence            7         899999754443455555 45556655543

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=98.44  E-value=1.1e-06  Score=63.17  Aligned_cols=70  Identities=19%  Similarity=0.330  Sum_probs=50.1

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHc-----CCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK-----LQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~-----~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      ++.|+++||++|+.+++.+.++       ++.+-.+|++++ .... ..     +++.++|++ ++.+|.  ...    .
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~~~-~~~~-~~~~~~~~~~~~vP~i-~~~~g~--~l~----~   65 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIEED-EGAA-DRVVSVNNGNMTVPTV-KFADGS--FLT----N   65 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCcCC-HhHH-HHHHHHhCCCceeCEE-EECCCe--Eec----C
Confidence            6789999999999999988665       356667888877 5544 34     488999997 576665  322    2


Q ss_pred             CCHHHHHHHHH
Q 018045          348 RDVDSLMAFVD  358 (361)
Q Consensus       348 ~~~~~l~~~i~  358 (361)
                      .+..++.+.|+
T Consensus        66 ~~~~~~~~~l~   76 (77)
T TIGR02200        66 PSAAQVKAKLQ   76 (77)
T ss_pred             CCHHHHHHHhh
Confidence            34567766654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.41  E-value=1.4e-06  Score=68.99  Aligned_cols=69  Identities=25%  Similarity=0.546  Sum_probs=59.4

Q ss_pred             CCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCC-
Q 018045          268 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG-  325 (361)
Q Consensus       268 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~-  325 (361)
                      .+++++|.||+. ||+.|+...+.+.++.++++..++.++.|..+..+                    ..++ +.|++. 
T Consensus        24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~  102 (124)
T PF00578_consen   24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELA-KAFGIED  102 (124)
T ss_dssp             TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHH-HHTTCEE
T ss_pred             CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHH-HHcCCcc
Confidence            579999999999 99999999999999999998767999999886541                    4567 788888 


Q ss_pred             -----CCCeEEEEeCCC
Q 018045          326 -----SFPTILFFPKHS  337 (361)
Q Consensus       326 -----~~Pt~~~~~~g~  337 (361)
                           .+|+++++.+++
T Consensus       103 ~~~~~~~p~~~lid~~g  119 (124)
T PF00578_consen  103 EKDTLALPAVFLIDPDG  119 (124)
T ss_dssp             TTTSEESEEEEEEETTS
T ss_pred             ccCCceEeEEEEECCCC
Confidence                 899999997766

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=98.40  E-value=1.7e-06  Score=67.42  Aligned_cols=97  Identities=15%  Similarity=0.311  Sum_probs=59.5

Q ss_pred             ccHHHHHhh-cCCCCcEEEEEEC-------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc------hHHHHH--
Q 018045          257 TGMENLARL-DHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ------KEYAKQ--  320 (361)
Q Consensus       257 ~~f~~~~~~-~~~~~~vlv~F~a-------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~------~~l~~~--  320 (361)
                      ++|.++++. .+++++++|+|++       +|||.|+...|.+++..+.... +..|+.|.+....      ..+- +  
T Consensus         6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG~r~~Wkdp~n~fR-~~p   83 (119)
T PF06110_consen    6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVGDRPEWKDPNNPFR-TDP   83 (119)
T ss_dssp             HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE---HHHHC-TTSHHH-H--
T ss_pred             HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcCCHHHhCCCCCCce-Ecc
Confidence            345555543 2356899999996       5999999999999998888665 7889888874320      2333 3  


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      ++++.++||++-+..+++ ...-.  -.+.+.+..|++
T Consensus        84 ~~~l~~IPTLi~~~~~~r-L~e~e--~~~~~lv~~~~e  118 (119)
T PF06110_consen   84 DLKLKGIPTLIRWETGER-LVEEE--CLNEDLVEMFFE  118 (119)
T ss_dssp             CC---SSSEEEECTSS-E-EEHHH--HH-HHHHHHHHH
T ss_pred             eeeeeecceEEEECCCCc-cchhh--hccHHHHHHHhc
Confidence            599999999999987742 22221  234455555544

; PDB: 1V9W_A 1WOU_A.

>TIGR03137 AhpC peroxiredoxin

Probab=98.39  E-value=2.5e-06  Score=72.93  Aligned_cols=92  Identities=13%  Similarity=0.152  Sum_probs=67.6

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~  322 (361)
                      .++++||+|| +.||+.|....|.|.++.+++.+.++.++.|.++..                        +..++ +.|
T Consensus        30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a-~~~  108 (187)
T TIGR03137        30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLT-RNF  108 (187)
T ss_pred             CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHH-HHh
Confidence            4789999999 999999999999999999999765677887776531                        13566 788


Q ss_pred             CCC------CCCeEEEEe-CCCCCeeecC--CCCCCHHHHHHHHHHh
Q 018045          323 QLG------SFPTILFFP-KHSSKPIKYP--SERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~------~~Pt~~~~~-~g~~~~~~~~--~~~~~~~~l~~~i~~~  360 (361)
                      ++.      ..|+.++++ +|+.....+.  ...++.+++.+.|+++
T Consensus       109 gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~~  155 (187)
T TIGR03137       109 GVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIKAA  155 (187)
T ss_pred             CCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            886      459889985 5553222211  1235888898888765

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=98.38  E-value=6.7e-06  Score=69.78  Aligned_cols=104  Identities=15%  Similarity=0.224  Sum_probs=86.1

Q ss_pred             CCceecCcccHHHHHhhcCCCCc-EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC--
Q 018045          249 QNLVTLNRTGMENLARLDHRQEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--  325 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~-vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~--  325 (361)
                      +.|.++|.+++..+..   .+.+ +++.|..........+...++++++.+++ .+.|+.+|++.. +.+. +.+++.  
T Consensus        77 P~v~~~t~~n~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~-~~~f~~~d~~~~-~~~~-~~~~i~~~  150 (184)
T PF13848_consen   77 PLVPELTPENFEKLFS---SPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG-KINFVYVDADDF-PRLL-KYFGIDED  150 (184)
T ss_dssp             TSCEEESTTHHHHHHS---TSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT-TSEEEEEETTTT-HHHH-HHTTTTTS
T ss_pred             ccccccchhhHHHHhc---CCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC-eEEEEEeehHHh-HHHH-HHcCCCCc
Confidence            5689999999999886   5655 88888877788899999999999999998 899999999988 8899 899998  


Q ss_pred             CCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 018045          326 SFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~  359 (361)
                      .+|++++++..... ...+.+ ..+.++|.+||++
T Consensus       151 ~~P~~vi~~~~~~~~~~~~~~-~~~~~~i~~Fl~d  184 (184)
T PF13848_consen  151 DLPALVIFDSNKGKYYYLPEG-EITPESIEKFLND  184 (184)
T ss_dssp             SSSEEEEEETTTSEEEE--SS-CGCHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCcEEcCCCC-CCCHHHHHHHhcC
Confidence            89999999844332 222344 7999999999974

...

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.8e-06  Score=65.56  Aligned_cols=78  Identities=15%  Similarity=0.293  Sum_probs=61.7

Q ss_pred             ccHHHHHhhcCCCCcEEEEEEC--------CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc------hHHHHHcC
Q 018045          257 TGMENLARLDHRQEPWLVVLYA--------PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ------KEYAKQKL  322 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a--------~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~------~~l~~~~~  322 (361)
                      ++|++.++...+++.++|+|++        +|||.|.+.+|.+.+.-+.... ++.|+.|++.+-.      ..+- ...
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG~rp~Wk~p~n~FR-~d~   90 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVGNRPYWKDPANPFR-KDP   90 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEecCCCcccCCCCccc-cCC
Confidence            5677777666567779999997        7999999999999999887666 8999999986431      3444 556


Q ss_pred             CC-CCCCeEEEEeCC
Q 018045          323 QL-GSFPTILFFPKH  336 (361)
Q Consensus       323 ~v-~~~Pt~~~~~~g  336 (361)
                      ++ .++||++=++++
T Consensus        91 ~~lt~vPTLlrw~~~  105 (128)
T KOG3425|consen   91 GILTAVPTLLRWKRQ  105 (128)
T ss_pred             CceeecceeeEEcCc
Confidence            66 899999999853

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.37  E-value=3.4e-06  Score=71.82  Aligned_cols=44  Identities=20%  Similarity=0.268  Sum_probs=37.4

Q ss_pred             CCCcE-EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .++++ ++.+||+||++|+..+|.++++.+.+++.++.++.|+++
T Consensus        39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~   83 (183)
T PTZ00256         39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN   83 (183)
T ss_pred             CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence            46654 456699999999999999999999998767999999864

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=98.36  E-value=1.1e-06  Score=72.04  Aligned_cols=79  Identities=18%  Similarity=0.439  Sum_probs=54.8

Q ss_pred             ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCCchHHHHHcC-------
Q 018045          253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAKQKL-------  322 (361)
Q Consensus       253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~-------  322 (361)
                      ..+++.|+...+   ++|+++|.++++||..|+.|..+ |  .++++.++. ++.-++||.++. +++. ..|       
T Consensus        24 ~w~~ea~~~Ak~---e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~-~FI~VkvDree~-Pdid-~~y~~~~~~~   97 (163)
T PF03190_consen   24 PWGEEALEKAKK---ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR-NFIPVKVDREER-PDID-KIYMNAVQAM   97 (163)
T ss_dssp             -SSHHHHHHHHH---HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH-H-EEEEEETTT--HHHH-HHHHHHHHHH
T ss_pred             cCCHHHHHHHHh---cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC-CEEEEEeccccC-ccHH-HHHHHHHHHh
Confidence            345566777665   89999999999999999999974 3  668888876 788899999988 8888 676       


Q ss_pred             -CCCCCCeEEEEeCCC
Q 018045          323 -QLGSFPTILFFPKHS  337 (361)
Q Consensus       323 -~v~~~Pt~~~~~~g~  337 (361)
                       +..++|+.+|.....
T Consensus        98 ~~~gGwPl~vfltPdg  113 (163)
T PF03190_consen   98 SGSGGWPLTVFLTPDG  113 (163)
T ss_dssp             HS---SSEEEEE-TTS
T ss_pred             cCCCCCCceEEECCCC
Confidence             788999999985443

; PDB: 3IRA_A.

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.32  E-value=9.2e-07  Score=73.09  Aligned_cols=82  Identities=17%  Similarity=0.254  Sum_probs=72.6

Q ss_pred             CceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ...++. ..+|-+...   +...|++.||-|.-..|+-|-..++.||..+-+  ..|++||++.. +-|+ .+++|.-+|
T Consensus        67 ~y~ev~~Ekdf~~~~~---kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e--TrFikvnae~~-PFlv-~kL~IkVLP  139 (211)
T KOG1672|consen   67 EYEEVASEKDFFEEVK---KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE--TRFIKVNAEKA-PFLV-TKLNIKVLP  139 (211)
T ss_pred             eEEEeccHHHHHHHhh---cCceEEEEEEcCCCcceehHHHHHHHHHHhccc--ceEEEEecccC-ceee-eeeeeeEee
Confidence            345554 566666665   788999999999999999999999999999976  89999999999 9999 999999999


Q ss_pred             eEEEEeCCCC
Q 018045          329 TILFFPKHSS  338 (361)
Q Consensus       329 t~~~~~~g~~  338 (361)
                      ++++|++|+.
T Consensus       140 ~v~l~k~g~~  149 (211)
T KOG1672|consen  140 TVALFKNGKT  149 (211)
T ss_pred             eEEEEEcCEE
Confidence            9999999984

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=98.31  E-value=5.5e-06  Score=64.74  Aligned_cols=100  Identities=10%  Similarity=0.058  Sum_probs=71.4

Q ss_pred             cHHHHHhh-cCCCCcEEEEEECC----CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEE
Q 018045          258 GMENLARL-DHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       258 ~f~~~~~~-~~~~~~vlv~F~a~----wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~  331 (361)
                      +|+++++. .++.|.++|++|++    ||..|+.... =+++.+.++. ++.+...|++..+ ..++ ..+++.++|+++
T Consensus         5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~-~~~v~~~ln~-~fv~w~~dv~~~eg~~la-~~l~~~~~P~~~   81 (116)
T cd02991           5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLC-APEVIEYINT-RMLFWACSVAKPEGYRVS-QALRERTYPFLA   81 (116)
T ss_pred             cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcC-CHHHHHHHHc-CEEEEEEecCChHHHHHH-HHhCCCCCCEEE
Confidence            45554433 34689999999999    8888865541 1445555555 7899999998663 5688 899999999999


Q ss_pred             EEe--CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          332 FFP--KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       332 ~~~--~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++.  +++...+....|..++++|...|+.+
T Consensus        82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~  112 (116)
T cd02991          82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFI  112 (116)
T ss_pred             EEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence            993  33333344444589999999998764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=98.31  E-value=5.3e-06  Score=69.95  Aligned_cols=92  Identities=12%  Similarity=0.139  Sum_probs=66.6

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~  319 (361)
                      .++.+||+|| +.||++|....+.++++++++.+.++.++.|.++...                           ..++ 
T Consensus        28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~-  106 (173)
T cd03015          28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS-  106 (173)
T ss_pred             CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH-
Confidence            4689999999 8999999999999999999997657888888765420                           2455 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      ..|+.+++++.......+.+   ...+.+++.+.|+++
T Consensus       107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~  156 (173)
T cd03015         107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL  156 (173)
T ss_pred             HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            567775      56899999644433333321   134678888888764

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell

Probab=98.30  E-value=2.9e-06  Score=72.33  Aligned_cols=145  Identities=18%  Similarity=0.181  Sum_probs=76.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-CCcHHHHHHHHHHHHHh---C--CcEEEEcCChHHHHHHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHF---G--IRIEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-~~~pet~~~v~~~~~~~---g--~~i~~~~p~~~~~~~~~~~~~   82 (361)
                      .++++.+|||-||.|. .|+.+.|.++..+|.+++ +.-+.+.+.++++.+.+   +  .++..+.-+.......+....
T Consensus         4 gk~l~LlSGGiDSpVAa~lm~krG~~V~~l~f~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l~~v~~~~~~~~i~~~~   83 (197)
T PF02568_consen    4 GKALALLSGGIDSPVAAWLMMKRGCEVIALHFDSPPFTGEKAREKVEELAEKLSEYSPGHKIRLYVVDFTEVQKEILRGV   83 (197)
T ss_dssp             -EEEEE-SSCCHHHHHHHHHHCBT-EEEEEEEE-TTTSSCCCHHHHHHHHHHHHCCSTTS-EEEEEECHHHHHHHHHHHS
T ss_pred             ceEEEEecCCccHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHhCCCcceeEEEECcHHHHHHHHhcC
Confidence            5789999999999776 888999999999999854 33344555555555554   3  344443333333332222221


Q ss_pred             CCCCCccchhchhhccccHHHHHHHc-----cCCEEEEeeeccCCc-cCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           83 LFSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSP-GTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~-~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                             .....|-.+|+.-++.+-+     +.++++||--..|-. ++..++..++...          +..-++||+.
T Consensus        84 -------~~~~~ci~ckr~M~r~A~~ia~~~ga~~IvTGEsLGQvaSQTl~nL~~i~~~~----------~~pIlRPLig  146 (197)
T PF02568_consen   84 -------KERNPCIDCKRFMYRIAEEIAEEEGADAIVTGESLGQVASQTLENLRVIESAS----------DLPILRPLIG  146 (197)
T ss_dssp             --------GGGHHHHHHHHHHHHHHHHHHHTT--EEE----SSSTTS--HHHHHHHGGG------------S-EE-TTTT
T ss_pred             -------CccchhHHHHHHHHHHHHHHHHHCCCCEEEeCchhHHHHhhhHHHHhhhhccc----------CCceeCCcCC
Confidence                   2334566666655554443     667888874333311 0112233322221          3457999999


Q ss_pred             CcHHHHHHHHHhCCC
Q 018045          157 VKGNDIWNFLRTMDV  171 (361)
Q Consensus       157 W~~~dv~~yi~~~~l  171 (361)
                      ++.+||-+..++-|.
T Consensus       147 ~dK~EIi~~Ar~Igt  161 (197)
T PF02568_consen  147 FDKEEIIEIARKIGT  161 (197)
T ss_dssp             --HHHHHHHHHHTT-
T ss_pred             CCHHHHHHHHHHhCc
Confidence            999999999999886

ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.29  E-value=1e-05  Score=68.94  Aligned_cols=93  Identities=15%  Similarity=0.206  Sum_probs=69.3

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~  322 (361)
                      .++.++|.|| ++||+.|....+.|.++.+++...++.++.|..|..                        +..++ +.|
T Consensus        30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia-~~y  108 (187)
T PRK10382         30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF  108 (187)
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHH-HHc
Confidence            4678999999 999999999999999999999765777887776542                        14677 788


Q ss_pred             CC----CCC--CeEEEEe-CCCCCeee-c-CCCCCCHHHHHHHHHHhC
Q 018045          323 QL----GSF--PTILFFP-KHSSKPIK-Y-PSERRDVDSLMAFVDALR  361 (361)
Q Consensus       323 ~v----~~~--Pt~~~~~-~g~~~~~~-~-~~~~~~~~~l~~~i~~~~  361 (361)
                      ++    .++  |+.++++ +|+..... + ....++.+++.+.|+.++
T Consensus       109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~alq  156 (187)
T PRK10382        109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  156 (187)
T ss_pred             CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence            88    356  9999996 44422111 1 122468999999998764

>PTZ00323 NAD+ synthase; Provisional

Probab=98.28  E-value=1.3e-05  Score=72.93  Aligned_cols=150  Identities=15%  Similarity=0.128  Sum_probs=85.7

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CC-C---ceEEEccCCC-CcHHHHHHHHHHHHHhCCcEEEEcCChH--HHHHHHHh
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GR-P---FRVFSLDTGR-LNPETYRFFDEVEKHFGIRIEYMFPDAV--EVQALVRS   80 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~-~---i~v~~~dtg~-~~pet~~~v~~~~~~~g~~i~~~~p~~~--~~~~~~~~   80 (361)
                      ++++|++|||-||+++ .|+.+. +. .   ..++.+.... .-+.+.+-++.+++.+|++++++.-+..  .+...+..
T Consensus        47 ~~vVVglSGGVDSav~aaLa~~alg~~~~~~~~~~~v~~P~~ss~~~~~~A~~la~~lGi~~~~idi~~l~~~~~~~i~~  126 (294)
T PTZ00323         47 KGCVTSVSGGIDSAVVLALCARAMRMPNSPIQKNVGLCQPIHSSAWALNRGRENIQACGATEVTVDQTEIHTQLSSLVEK  126 (294)
T ss_pred             CcEEEECCCCHHHHHHHHHHHHHhccccCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCcEEEEECcHHHHHHHHHHhh
Confidence            6899999999999877 666663 32 1   2344444332 3678999999999999999887744421  11111111


Q ss_pred             c-CCCC--CCccchhchhhccccHHHHHHH--ccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeC
Q 018045           81 K-GLFS--FYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV  154 (361)
Q Consensus        81 ~-~~~~--~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi  154 (361)
                      . +...  +.....+...+..-..-+....  .+...++.|. +++|-. . .+......|           +...+.||
T Consensus       127 ~~~~~~~~~~~~n~~ar~R~~~lY~la~~~~~~g~~~lV~GT~N~sE~~-~-~Gy~t~~GD-----------g~~d~~pi  193 (294)
T PTZ00323        127 AVGIKGGAFARGQLRSYMRTPVAFYVAQLLSQEGTPAVVMGTGNFDEDG-Y-LGYFCKAGD-----------GVVDVQLI  193 (294)
T ss_pred             hhcccchhhHHHhHHHHHHhHHHHHHHHHHhhcCCCeEEECCCCchhhh-H-hchHhhcCC-----------CCcCchhh
Confidence            0 1000  0000011111110001111111  1445889999 888841 1 132222222           45679999


Q ss_pred             ccCcHHHHHHHHHhCCCC
Q 018045          155 ANVKGNDIWNFLRTMDVP  172 (361)
Q Consensus       155 ~~W~~~dv~~yi~~~~lp  172 (361)
                      .+++..||+...+..++|
T Consensus       194 a~L~K~eVr~LAr~l~lp  211 (294)
T PTZ00323        194 SDLHKSEVFLVARELGVP  211 (294)
T ss_pred             cCCcHHHHHHHHHHcCCC
Confidence            999999999999988765

>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]

Probab=98.28  E-value=3.3e-05  Score=59.42  Aligned_cols=104  Identities=19%  Similarity=0.370  Sum_probs=80.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHH-HHhcC-CCeEEEEEEcCC----CchHHHHHcC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELA-DKLAG-NGVKVGKFRADG----DQKEYAKQKL  322 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la-~~~~~-~~v~~~~vd~~~----~~~~l~~~~~  322 (361)
                      ...+.|+.-+|++++.   ..+.+||.|=...  |--.-...|.++| +..+. +++-++.|-+..    .+.+|+ ++|
T Consensus         4 ~G~v~LD~~tFdKvi~---kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~La-ery   77 (126)
T PF07912_consen    4 KGCVPLDELTFDKVIP---KFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELA-ERY   77 (126)
T ss_dssp             TTSEEESTTHHHHHGG---GSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHH-HHT
T ss_pred             Cceeeccceehhheec---cCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHH-HHh
Confidence            3467899999999997   8899999998765  4455677899999 55443 479999998754    238999 999


Q ss_pred             CC--CCCCeEEEEeCCCCCeeec--CCCCCCHHHHHHHHHH
Q 018045          323 QL--GSFPTILFFPKHSSKPIKY--PSERRDVDSLMAFVDA  359 (361)
Q Consensus       323 ~v--~~~Pt~~~~~~g~~~~~~~--~~~~~~~~~l~~~i~~  359 (361)
                      +|  +.+|.+++|..+...++.|  .+ ..+.++|..|+++
T Consensus        78 ~i~ke~fPv~~LF~~~~~~pv~~p~~~-~~t~~~l~~fvk~  117 (126)
T PF07912_consen   78 KIDKEDFPVIYLFVGDKEEPVRYPFDG-DVTADNLQRFVKS  117 (126)
T ss_dssp             T-SCCC-SEEEEEESSTTSEEEE-TCS--S-HHHHHHHHHH
T ss_pred             CCCcccCCEEEEecCCCCCCccCCccC-CccHHHHHHHHHh
Confidence            99  6799999999777778888  55 7999999999975

The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein

Probab=98.28  E-value=3.3e-06  Score=73.82  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=81.0

Q ss_pred             EEEecchHHHHHH-HHHHHcCCCce-EEEccCCC-----CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCC
Q 018045           13 AIAFSGAEDVALI-EYAHLTGRPFR-VFSLDTGR-----LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFS   85 (361)
Q Consensus        13 ~vs~SGGKDS~~l-~l~~~~~~~i~-v~~~dtg~-----~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~   85 (361)
                      +++|||||||+++ +++.+.+.++. +++++...     ....-.+.++.+++.+|+++.++.-+...... .       
T Consensus         1 ~vl~SGGkDS~~al~~a~~~G~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~A~~lgip~~~i~~~~~~~~~-~-------   72 (218)
T TIGR03679         1 AALYSGGKDSNYALYKALEEGHEVRCLITVVPENEESYMFHTPNIELTRLQAEALGIPLVKIETSGEKEKE-V-------   72 (218)
T ss_pred             CeeecCcHHHHHHHHHHHHcCCEEEEEEEeccCCCCccccCCCCHHHHHHHHHHhCCCEEEEECCCCChHH-H-------
Confidence            3789999999877 88888877764 55655431     11223578899999999998776432100000 0       


Q ss_pred             CCccchhchhhccccHHHHHHHc-cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045           86 FYEDGHQECCRVRKVRPLRRALK-GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN  164 (361)
Q Consensus        86 ~~~~~~~~cc~~~K~~pl~~~~~-~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~  164 (361)
                           ..     +. ..+.++.+ +.+.+++|...++-  +|.....+...          .++.-+.||+.++.+++..
T Consensus        73 -----~~-----l~-~~l~~~~~~g~~~vv~G~i~sd~--~~~~~e~v~~~----------~gl~~~~PLw~~~~~el~~  129 (218)
T TIGR03679        73 -----ED-----LK-GALKELKREGVEGIVTGAIASRY--QKSRIERICEE----------LGLKVFAPLWGRDQEEYLR  129 (218)
T ss_pred             -----HH-----HH-HHHHHHHHcCCCEEEECCcccHh--HHHHHHHHHHh----------CCCeEEeehhcCCHHHHHH
Confidence                 00     00 11122222 67899999999875  34333322211          2566899999999999999


Q ss_pred             HHHhCCCC
Q 018045          165 FLRTMDVP  172 (361)
Q Consensus       165 yi~~~~lp  172 (361)
                      -+...|+.
T Consensus       130 ~~~~~G~~  137 (218)
T TIGR03679       130 ELVERGFR  137 (218)
T ss_pred             HHHHCCCE
Confidence            88877753

This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=98.26  E-value=9e-06  Score=67.12  Aligned_cols=89  Identities=13%  Similarity=0.144  Sum_probs=61.7

Q ss_pred             CCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCCC
Q 018045          268 RQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~~  326 (361)
                      ++++++|.||+. ||+.|....+.+.++.+.+++.++.++.|..+..+                    ..+. +.|++..
T Consensus        29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~  107 (154)
T PRK09437         29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVA-EQFGVWG  107 (154)
T ss_pred             CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHH-HHhCCCc
Confidence            578999999976 68889999999999999998767888888875431                    3566 6788764


Q ss_pred             C------------CeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          327 F------------PTILFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       327 ~------------Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      .            |+.++++..+.....+.| ....+.+.+.++
T Consensus       108 ~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g-~~~~~~~~~~~~  150 (154)
T PRK09437        108 EKKFMGKTYDGIHRISFLIDADGKIEHVFDK-FKTSNHHDVVLD  150 (154)
T ss_pred             ccccccccccCcceEEEEECCCCEEEEEEcC-CCcchhHHHHHH
Confidence            3            677788543333445554 343444444443

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.25  E-value=8.6e-06  Score=72.20  Aligned_cols=87  Identities=21%  Similarity=0.183  Sum_probs=69.1

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------chHHHHHcCCCCCCCeEEEEeCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS  338 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~v~~~Pt~~~~~~g~~  338 (361)
                      ++.-|++||.+.|+.|+.+.|++..+++.++   +.+..|++|..          +..++ ++++|..+|++++...+..
T Consensus       150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~Pal~Lv~~~t~  225 (256)
T TIGR02739       150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGTLIPGLPNSRSDSGQA-QHLGVKYFPALYLVNPKSQ  225 (256)
T ss_pred             hceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCccCChHHH-HhcCCccCceEEEEECCCC
Confidence            5588999999999999999999999999994   67777776643          14577 8999999999999977655


Q ss_pred             CeeecCCCCCCHHHHHHHHHH
Q 018045          339 KPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       339 ~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ......-|..+.++|.+-|-.
T Consensus       226 ~~~pv~~G~iS~deL~~Ri~~  246 (256)
T TIGR02739       226 KMSPLAYGFISQDELKERILN  246 (256)
T ss_pred             cEEEEeeccCCHHHHHHHHHH
Confidence            444444457999999876654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6

Probab=98.25  E-value=1.4e-06  Score=77.25  Aligned_cols=155  Identities=15%  Similarity=0.189  Sum_probs=90.1

Q ss_pred             HHhHhC-CcEEEEecchHHHHHH-HHHHH-cC-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            4 ALEKFG-NDIAIAFSGAEDVALI-EYAHL-TG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         4 ~~~~~~-~~i~vs~SGGKDS~~l-~l~~~-~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      .+++.+ ++++|++|||-||+++ .|+.+ .+ .++..++++++...+++.+-+..+++.+|+++.++.-+. .+..+..
T Consensus        12 ~~~~~g~~~vVvglSGGiDSav~A~La~~Alg~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~i~~-~~~~~~~   90 (242)
T PF02540_consen   12 YVKKSGAKGVVVGLSGGIDSAVVAALAVKALGPDNVLAVIMPSGFSSEEDIEDAKELAEKLGIEYIVIDIDP-IFDAFLK   90 (242)
T ss_dssp             HHHHHTTSEEEEEETSSHHHHHHHHHHHHHHGGGEEEEEEEESSTSTHHHHHHHHHHHHHHTSEEEEEESHH-HHHHHHH
T ss_pred             HHHHhCCCeEEEEcCCCCCHHHHHHHHHHHhhhccccccccccccCChHHHHHHHHHHHHhCCCeeccchHH-HHHHHhh
Confidence            344444 6899999999999877 67776 44 467889999999999999999999999999988774332 1222211


Q ss_pred             hcCCCCCCccchh--chhhccccHHHHHHHccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           80 SKGLFSFYEDGHQ--ECCRVRKVRPLRRALKGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        80 ~~~~~~~~~~~~~--~cc~~~K~~pl~~~~~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                      ....   ......  .-+...++..+..+.......+.|. +++|..   ...     -.+|+      .+..-+.||.+
T Consensus        91 ~~~~---~~~~~~~~Ni~aR~Rm~~ly~~a~~~~~lVlgT~N~sE~~---~Gy-----~T~~G------D~~~d~~Pi~~  153 (242)
T PF02540_consen   91 SLEP---ADDDLARGNIQARIRMTTLYALANKYNYLVLGTGNKSELL---LGY-----FTKYG------DGAGDIAPIAD  153 (242)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHTEEEBE--CHHHHH---HTC-----SHTTT------TTSSSBETTTT
T ss_pred             hhcc---chhhhhhhhHHHHHHHHHHHHHhcccceEEecCCcHHHhh---cCc-----ccccC------cccccceeeCC
Confidence            1000   000000  0112222222222222334555544 222221   111     11121      11224799999


Q ss_pred             CcHHHHHHHHHhCCCCCCcc
Q 018045          157 VKGNDIWNFLRTMDVPINSL  176 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp~~~l  176 (361)
                      ....+|++..+..++|-.-+
T Consensus       154 L~K~eV~~la~~l~ip~~ii  173 (242)
T PF02540_consen  154 LYKTEVRELARYLGIPEEII  173 (242)
T ss_dssp             S-HHHHHHHHHHTTCGHHHH
T ss_pred             cCHHHHHHHHHHHhhHHHHh
Confidence            99999999999999875333

3.5.1 from EC) catalyzes the last step in the biosynthesis of nicotinamide adenine dinucleotide and is induced by stress factors such as heat shock and glucose limitation. The three-dimensional structure of NH3-dependent NAD+ synthetase from Bacillus subtilis, in its free form and in complex with ATP shows that the enzyme consists of a tight homodimer with alpha/beta subunit topology []. Catalyzes the synthesis of GMP from XMP. The protein is a homodimer, but in the archaea it is a heterodimer composed of a glutamine amidotransferase subunit (A) and a GMP-binding subunit (B). This entry contains the GMP-binding subunit (B). ; PDB: 2VXO_A 3UOW_B 3N05_A 2DPL_B 3A4I_A 3SEQ_D 3SZG_A 3SYT_A 3SDB_A 3SEZ_C ....

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.22  E-value=9.4e-06  Score=66.35  Aligned_cols=45  Identities=22%  Similarity=0.383  Sum_probs=36.9

Q ss_pred             CCcEEEEE-ECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045          269 QEPWLVVL-YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD  313 (361)
Q Consensus       269 ~~~vlv~F-~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~  313 (361)
                      ++.++|.| +++||++|+...|.+.++.+.+.+.++.++.|+.+..
T Consensus        23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~   68 (149)
T cd02970          23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP   68 (149)
T ss_pred             CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence            45555555 5999999999999999999999765799999987654

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG2805 consensus tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=4.4e-05  Score=67.90  Aligned_cols=162  Identities=11%  Similarity=0.062  Sum_probs=99.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccC-------C--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----H
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDT-------G--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----Q   75 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dt-------g--~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~   75 (361)
                      ++|+|+.|||-||.+. +|+++.+.++.-||+-.       |  -....-.+.+++++++++++++.+.-...-+    .
T Consensus         6 ~~VvvamSgGVDSsVaa~Ll~~~g~~v~gv~M~nWd~~de~~s~cp~e~D~~da~~Vc~~LnI~~~~Vnf~kEYW~~Vfs   85 (377)
T KOG2805|consen    6 DRVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDSLDEFGSQCPAERDWKDAKRVCKQLNIPLHQVNFVKEYWNDVFS   85 (377)
T ss_pred             ceEEEEecCCchHHHHHHHHHhcCCCeeEEeeeccccccccccCCCchhhHHHHHHHHHHhCCeeEEEeeHHHHHHHHHH
Confidence            6899999999998766 89999999988887532       1  1233456789999999999998875544322    2


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHc---cCCEEEEeeeccCCccCccC---CCce-ecCC----C-CcCCcC
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSE---IPVV-QVDP----V-FEGLEG  143 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~~R~~---~~~~-~~~~----~-~~~~~~  143 (361)
                      .+++.+..-..|. +.--|....|-..+.+.+.   +++.++||+=|--+. .-..   ...+ ..+.    . |.+...
T Consensus        86 ~~L~~Y~~G~TPN-PDI~CN~~IKFg~~~~~a~en~~~d~latGHYAr~~~-~~~~~~~~~l~~~~d~~KDQt~FL~~in  163 (377)
T KOG2805|consen   86 PFLEEYENGRTPN-PDILCNKHIKFGKFFKHAIENLGYDWLATGHYARVVL-EDEDNAESHLLISKDMVKDQTYFLSTIN  163 (377)
T ss_pred             HHHHHHhcCCCCC-CCccccceeeccHHHHHHHHhcCCCeEEeeeeeeeec-CcccCcceeEeecccccCCceeEeeccc
Confidence            2233332211222 2235888888885555554   668899998654432 1111   0000 1110    0 000000


Q ss_pred             CCCCeEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045          144 GVGSLVKWNPVANVKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       144 ~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~  173 (361)
                      ..--.-...||-.|+..+|....+..|+|.
T Consensus       164 ~~~L~r~lfPlg~~~K~eVk~lA~~~gf~~  193 (377)
T KOG2805|consen  164 QTQLKRLLFPLGCLTKSEVKKLAKQAGFPN  193 (377)
T ss_pred             HHHHHhhhccCcccCHHHHHHHHHhcCCcc
Confidence            000001368999999999999999999984

>TIGR02180 GRX_euk Glutaredoxin

Probab=98.21  E-value=3.5e-06  Score=61.74  Aligned_cols=59  Identities=14%  Similarity=0.285  Sum_probs=44.7

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch----HHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|+++||++|+.+.+.++++.  .+. .+.++.||.+.+..    .+. +.+++.++|+++  -+|+
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~~~~~~~~~~l~-~~~g~~~vP~v~--i~g~   63 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQLSNGSEIQDYLE-EITGQRTVPNIF--INGK   63 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCCCChHHHHHHHH-HHhCCCCCCeEE--ECCE
Confidence            57899999999999999999986  333 47788888765522    255 667999999984  3554

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=1.5e-05  Score=70.97  Aligned_cols=110  Identities=17%  Similarity=0.300  Sum_probs=86.7

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECC----CChhHHhhHHHHHHHHHHhcC-----C--CeEEEEEEcCCCchH
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAP----WCQFCQAMEGSYVELADKLAG-----N--GVKVGKFRADGDQKE  316 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~----wC~~C~~~~p~~~~la~~~~~-----~--~v~~~~vd~~~~~~~  316 (361)
                      +..|..+++++|..++.....+=.++|+|.|.    .|+-|+.+..++.-++..+..     +  ++-|..||.++. ++
T Consensus        39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-p~  117 (331)
T KOG2603|consen   39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-PQ  117 (331)
T ss_pred             CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-HH
Confidence            47899999999999998444555788888875    499999999999999999754     2  688999999999 99


Q ss_pred             HHHHcCCCCCCCeEEEEeCCCCCe---eecCCC--CCCHHHHHHHHHH
Q 018045          317 YAKQKLQLGSFPTILFFPKHSSKP---IKYPSE--RRDVDSLMAFVDA  359 (361)
Q Consensus       317 l~~~~~~v~~~Pt~~~~~~g~~~~---~~~~~~--~~~~~~l~~~i~~  359 (361)
                      +. ++++++++|++++|...+...   ..+...  ...++++.+|++.
T Consensus       118 ~F-q~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~  164 (331)
T KOG2603|consen  118 VF-QQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVAD  164 (331)
T ss_pred             HH-HHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHH
Confidence            99 999999999999995443221   111110  1348999999875

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=98.18  E-value=1.2e-05  Score=67.36  Aligned_cols=88  Identities=10%  Similarity=0.146  Sum_probs=62.5

Q ss_pred             CCCcEEEEEECCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v  324 (361)
                      .++.++|+||+.| |++|....|.++++++.+.  ++.++.|..|..                      ...++ +.|++
T Consensus        43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~-~~~gv  119 (167)
T PRK00522         43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFG-KAYGV  119 (167)
T ss_pred             CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHH-HHhCC
Confidence            4789999999999 9999999999999999984  588888876542                      03667 78888


Q ss_pred             CCCC---------eEEEEeCCCCCeeecC----CCCCCHHHHHHHHH
Q 018045          325 GSFP---------TILFFPKHSSKPIKYP----SERRDVDSLMAFVD  358 (361)
Q Consensus       325 ~~~P---------t~~~~~~g~~~~~~~~----~~~~~~~~l~~~i~  358 (361)
                      ...|         +.++++..+.....+.    ....+.+++.++|+
T Consensus       120 ~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~  166 (167)
T PRK00522        120 AIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDYDAALAALK  166 (167)
T ss_pred             eecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhh
Confidence            8777         8888864433222221    12335666666654

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.18  E-value=1.8e-05  Score=69.80  Aligned_cols=87  Identities=16%  Similarity=0.138  Sum_probs=67.5

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------chHHHHHcCCCCCCCeEEEEeCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------QKEYAKQKLQLGSFPTILFFPKHSS  338 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------~~~l~~~~~~v~~~Pt~~~~~~g~~  338 (361)
                      ++.-|++||.+.|+.|+.+.|++..+++.++   +.+..|.+|..          +...+ ++++|..+|++++...+..
T Consensus       143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~~~p~fp~~~~d~gqa-~~l~v~~~PAl~Lv~~~t~  218 (248)
T PRK13703        143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGVINPLLPDSRTDQGQA-QRLGVKYFPALMLVDPKSG  218 (248)
T ss_pred             hcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCCCCCCCCCCccChhHH-HhcCCcccceEEEEECCCC
Confidence            4588999999999999999999999999984   66666666541          13466 7899999999999976654


Q ss_pred             CeeecCCCCCCHHHHHHHHHH
Q 018045          339 KPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       339 ~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ......-|..+.++|.+-|-.
T Consensus       219 ~~~pv~~G~iS~deL~~Ri~~  239 (248)
T PRK13703        219 SVRPLSYGFITQDDLAKRFLN  239 (248)
T ss_pred             cEEEEeeccCCHHHHHHHHHH
Confidence            444444457899999876653

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=98.18  E-value=1.6e-05  Score=57.23  Aligned_cols=74  Identities=16%  Similarity=0.398  Sum_probs=54.5

Q ss_pred             EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 018045          274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL  353 (361)
Q Consensus       274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l  353 (361)
                      |.+++++|+.|..+...++++++.++   +.+-.+|.... ++ . .+|+|.++|++++  +|+   +.+.|...+.++|
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~---i~~ei~~~~~~-~~-~-~~ygv~~vPalvI--ng~---~~~~G~~p~~~el   71 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG---IEVEIIDIEDF-EE-I-EKYGVMSVPALVI--NGK---VVFVGRVPSKEEL   71 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT---EEEEEEETTTH-HH-H-HHTT-SSSSEEEE--TTE---EEEESS--HHHHH
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC---CeEEEEEccCH-HH-H-HHcCCCCCCEEEE--CCE---EEEEecCCCHHHH
Confidence            34478889999999999999999883   66666677544 44 4 6999999999955  565   5566646788899


Q ss_pred             HHHHH
Q 018045          354 MAFVD  358 (361)
Q Consensus       354 ~~~i~  358 (361)
                      .++|+
T Consensus        72 ~~~l~   76 (76)
T PF13192_consen   72 KELLE   76 (76)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            88875

...

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=98.16  E-value=1.3e-05  Score=65.67  Aligned_cols=88  Identities=14%  Similarity=0.214  Sum_probs=60.4

Q ss_pred             CCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------c--hHHHHHcCCCC
Q 018045          269 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------Q--KEYAKQKLQLG  325 (361)
Q Consensus       269 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~--~~l~~~~~~v~  325 (361)
                      +++++|.|| ++||+.|....|.++++.+.+++.++.++.|..+..                    +  ..+. +.|++.
T Consensus        28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~~~g~~  106 (149)
T cd03018          28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVA-KAYGVF  106 (149)
T ss_pred             CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHH-HHhCCc
Confidence            378888887 999999999999999999999765788888876542                    1  3456 677776


Q ss_pred             ----CC--CeEEEEe-CCCCCeeecCCC---CCCHHHHHHHHH
Q 018045          326 ----SF--PTILFFP-KHSSKPIKYPSE---RRDVDSLMAFVD  358 (361)
Q Consensus       326 ----~~--Pt~~~~~-~g~~~~~~~~~~---~~~~~~l~~~i~  358 (361)
                          ++  |+.++++ +|+. ...+.+.   ..+..++..-|+
T Consensus       107 ~~~~~~~~~~~~lid~~G~v-~~~~~~~~~~~~~~~~~~~~~~  148 (149)
T cd03018         107 DEDLGVAERAVFVIDRDGII-RYAWVSDDGEPRDLPDYDEALD  148 (149)
T ss_pred             cccCCCccceEEEECCCCEE-EEEEecCCcccccchhHHHHhh
Confidence                33  3778886 4542 3333332   245566655543

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.16  E-value=7.1e-06  Score=65.36  Aligned_cols=86  Identities=19%  Similarity=0.314  Sum_probs=50.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcC---CCCCCCeEEEEeCCCCCeeecC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL---QLGSFPTILFFPKHSSKPIKYP  344 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~---~v~~~Pt~~~~~~g~~~~~~~~  344 (361)
                      ..+..++.|..+|||.|+...|.+.++++..++  +.+--+--|.+ .++. .+|   +..++|++++++++.. .+..-
T Consensus        40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd~~-~el~-~~~lt~g~~~IP~~I~~d~~~~-~lg~w  114 (129)
T PF14595_consen   40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRDEN-KELM-DQYLTNGGRSIPTFIFLDKDGK-ELGRW  114 (129)
T ss_dssp             -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HHHH-HHHT-TTTTT-SS--SSEEEEE-TT---EEEEE
T ss_pred             CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEecCC-hhHH-HHHHhCCCeecCEEEEEcCCCC-EeEEE
Confidence            456789999999999999999999999998754  77777777777 7766 444   5788999999966532 44443


Q ss_pred             CCCCCHHHHHHHHHHh
Q 018045          345 SERRDVDSLMAFVDAL  360 (361)
Q Consensus       345 ~~~~~~~~l~~~i~~~  360 (361)
                      |  --++.+.+++.++
T Consensus       115 g--erP~~~~~~~~~~  128 (129)
T PF14595_consen  115 G--ERPKEVQELVDEY  128 (129)
T ss_dssp             E--SS-HHHH------
T ss_pred             c--CCCHHHhhccccC
Confidence            3  2355666665554

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.14  E-value=1.8e-05  Score=68.47  Aligned_cols=92  Identities=16%  Similarity=0.218  Sum_probs=66.4

Q ss_pred             CCcEEE-EEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHHc
Q 018045          269 QEPWLV-VLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK  321 (361)
Q Consensus       269 ~~~vlv-~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~  321 (361)
                      ++.++| .|+++||+.|....+.|.++.++++..++.++.|.++..                          +..++ +.
T Consensus        27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia-~~  105 (202)
T PRK13190         27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA-RE  105 (202)
T ss_pred             CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH-HH
Confidence            555554 688999999999999999999999865788888876531                          14566 67


Q ss_pred             CCCC------CCCeEEEEeCCCCCeeec--C-CCCCCHHHHHHHHHHhC
Q 018045          322 LQLG------SFPTILFFPKHSSKPIKY--P-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       322 ~~v~------~~Pt~~~~~~g~~~~~~~--~-~~~~~~~~l~~~i~~~~  361 (361)
                      |++.      .+|++++++..+......  . ...++.+++...|+.++
T Consensus       106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~  154 (202)
T PRK13190        106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ  154 (202)
T ss_pred             cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            8874      589999996544322111  1 12479999999988764

>KOG3414 consensus Component of the U4/U6

Probab=98.13  E-value=5.2e-05  Score=58.20  Aligned_cols=99  Identities=12%  Similarity=0.225  Sum_probs=79.7

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      ...++.+. ....+.++|-|.-+|-+.|..|...+.++++...+ -..++-||+++- +++. +-|++...||+++|-++
T Consensus        12 ~~VdqaI~-~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn-fa~IylvdideV-~~~~-~~~~l~~p~tvmfFfn~   87 (142)
T KOG3414|consen   12 WEVDQAIL-STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN-FAVIYLVDIDEV-PDFV-KMYELYDPPTVMFFFNN   87 (142)
T ss_pred             HHHHHHHh-cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh-ceEEEEEecchh-hhhh-hhhcccCCceEEEEEcC
Confidence            44566554 44688999999999999999999999999999987 677888999988 9999 99999999999999887


Q ss_pred             CCCeeecCCC--------CCCHHHHHHHHHH
Q 018045          337 SSKPIKYPSE--------RRDVDSLMAFVDA  359 (361)
Q Consensus       337 ~~~~~~~~~~--------~~~~~~l~~~i~~  359 (361)
                      +-..+.+..|        ..+.+++++.++.
T Consensus        88 kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~  118 (142)
T KOG3414|consen   88 KHMKIDLGTGDNNKINFAFEDKQEFIDIIET  118 (142)
T ss_pred             ceEEEeeCCCCCceEEEEeccHHHHHHHHHH
Confidence            7444454443        2356777777764

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PRK00876 nadE NAD synthetase; Reviewed

Probab=98.12  E-value=4.8e-05  Score=70.11  Aligned_cols=61  Identities=18%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD   70 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~   70 (361)
                      ++++|++|||.||+++ .|+.+. + .++..++++++..-++..++++.+++.+|++++++.-.
T Consensus        34 ~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~~~~s~~~e~~~A~~lA~~LGi~~~~i~i~   97 (326)
T PRK00876         34 RGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMPERDSSPESLRLGREVAEHLGVEYVVEDIT   97 (326)
T ss_pred             CCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEecCCCCChHHHHHHHHHHHHcCCCEEEEECc
Confidence            5899999999999877 777764 4 35777888887666888999999999999998876544

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=98.12  E-value=3.8e-05  Score=59.57  Aligned_cols=101  Identities=14%  Similarity=0.112  Sum_probs=78.7

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHH---hcCCCeEEEEEEcCCCchHHHHHcCCCCC-
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADK---LAGNGVKVGKFRADGDQKEYAKQKLQLGS-  326 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~---~~~~~v~~~~vd~~~~~~~l~~~~~~v~~-  326 (361)
                      |.++|.++++.+..   .+.+..+.|+.+  ..-....+.+.++|+.   +++ ++.|+.+|.+.. .... +.|++.. 
T Consensus         1 ~~e~t~e~~~~~~~---~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kg-ki~Fv~~d~~~~-~~~~-~~fgl~~~   72 (111)
T cd03072           1 VREITFENAEELTE---EGLPFLILFHDK--DDLESLKEFKQAVARQLISEKG-AINFLTADGDKF-RHPL-LHLGKTPA   72 (111)
T ss_pred             CcccccccHHHHhc---CCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCc-eEEEEEEechHh-hhHH-HHcCCCHh
Confidence            46788899988776   666766677732  3346788999999999   988 899999999998 6678 8999987 


Q ss_pred             -CCeEEEEeCCCCCeee-cCCCCCCHHHHHHHHHHh
Q 018045          327 -FPTILFFPKHSSKPIK-YPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 -~Pt~~~~~~g~~~~~~-~~~~~~~~~~l~~~i~~~  360 (361)
                       +|.+.+.......... +.+ ..+.++|.+|++++
T Consensus        73 ~~P~i~i~~~~~~~Ky~~~~~-~~t~~~i~~Fv~~~  107 (111)
T cd03072          73 DLPVIAIDSFRHMYLFPDFED-VYVPGKLKQFVLDL  107 (111)
T ss_pred             HCCEEEEEcchhcCcCCCCcc-ccCHHHHHHHHHHH
Confidence             9999999764422233 333 78999999999875

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=98.09  E-value=1.2e-05  Score=65.51  Aligned_cols=67  Identities=10%  Similarity=0.150  Sum_probs=52.2

Q ss_pred             CCCcEEEEEECCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------c-hHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------Q-KEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~-~~l~~~~~~v  324 (361)
                      .+++++|+||+.| |++|+...|.++++.++++  ++.|+.|+.+..                     . ..++ +.|++
T Consensus        25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv  101 (143)
T cd03014          25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFG-KAYGV  101 (143)
T ss_pred             CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHH-HHhCC
Confidence            4789999999998 6999999999999999985  588888887632                     0 3455 56776


Q ss_pred             CC------CCeEEEEe-CCC
Q 018045          325 GS------FPTILFFP-KHS  337 (361)
Q Consensus       325 ~~------~Pt~~~~~-~g~  337 (361)
                      ..      .|+.++++ +|+
T Consensus       102 ~~~~~~~~~~~~~iid~~G~  121 (143)
T cd03014         102 LIKDLGLLARAVFVIDENGK  121 (143)
T ss_pred             eeccCCccceEEEEEcCCCe
Confidence            53      68888886 555

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK15000 peroxidase; Provisional

Probab=98.09  E-value=2.6e-05  Score=67.28  Aligned_cols=92  Identities=13%  Similarity=0.254  Sum_probs=69.0

Q ss_pred             CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045          268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~  319 (361)
                      .++.++|+||+ +||+.|....+.|.+++++++..++.++.|.+|...                           ..++ 
T Consensus        33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia-  111 (200)
T PRK15000         33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ-  111 (200)
T ss_pred             CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH-
Confidence            47899999999 599999999999999999998667888888776320                           2455 


Q ss_pred             HcCCCC------CCCeEEEEe-CCCCCeeecCC---CCCCHHHHHHHHHHhC
Q 018045          320 QKLQLG------SFPTILFFP-KHSSKPIKYPS---ERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~-~g~~~~~~~~~---~~~~~~~l~~~i~~~~  361 (361)
                      +.|++.      .+|+.++++ +|+.. ..+.+   -.++.+++.+.|+.++
T Consensus       112 ~~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~al~  162 (200)
T PRK15000        112 KAYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDALQ  162 (200)
T ss_pred             HHcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHhh
Confidence            667876      689999996 45432 22211   2378999999888764

>PRK05370 argininosuccinate synthase; Validated

Probab=98.06  E-value=4.8e-05  Score=71.83  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=92.0

Q ss_pred             HHhHh--CCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHHH
Q 018045            4 ALEKF--GNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALVR   79 (361)
Q Consensus         4 ~~~~~--~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~~   79 (361)
                      .+++.  +++|+++||||=|+.++ .++++.+.+|..+++|+|..-.+-++.+++-+..+|. ++.++.......++++.
T Consensus         4 ~~~~l~~~~KVvLAYSGGLDTSv~l~wL~e~~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i~   83 (447)
T PRK05370          4 ILKHLPVGQRVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGIA   83 (447)
T ss_pred             hhhhCCCCCEEEEEecCCchHHHHHHHHHhcCCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHHH
Confidence            34554  37899999999996544 6666668889999999995213456788888999998 57766544433333321


Q ss_pred             hcCCCCCC--------ccchhchhhccccHHHHHHHc--cCCEEEEeee-ccCCccCccCCCceecCCCCcCCcCCCCCe
Q 018045           80 SKGLFSFY--------EDGHQECCRVRKVRPLRRALK--GLRAWITGQR-KDQSPGTRSEIPVVQVDPVFEGLEGGVGSL  148 (361)
Q Consensus        80 ~~~~~~~~--------~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R-~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~  148 (361)
                      .-..+..+        .....--....- .-+-+..+  +.+++.-|-. +.-. +-|..+.+...++          .+
T Consensus        84 aI~anA~Y~~~~e~~Y~l~t~LaRplia-~~lv~~A~~~ga~aIAHG~TGKGND-QvRFE~~~~aL~P----------~l  151 (447)
T PRK05370         84 AIQCGAFHISTGGVTYFNTTPLGRAVTG-TMLVAAMKEDGVNIWGDGSTYKGND-IERFYRYGLLTNP----------EL  151 (447)
T ss_pred             HHHcCCccccccCccccCCCcchHHHHH-HHHHHHHHHhCCcEEEEcCCCCCCc-hHHHHHHHHHhCC----------CC
Confidence            11111111        000000000111 11111122  5566665543 1111 1354444433343          34


Q ss_pred             EEEeeCccC-------cHHHHHHHHHhCCCCCC
Q 018045          149 VKWNPVANV-------KGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       149 ~~~~Pi~~W-------~~~dv~~yi~~~~lp~~  174 (361)
                      -.+.|.-+|       +.+|--+|+++||||+.
T Consensus       152 ~ViaPwRd~~~~~~f~sR~e~i~Ya~~hGIpv~  184 (447)
T PRK05370        152 KIYKPWLDQDFIDELGGRAEMSEFLIAHGFDYK  184 (447)
T ss_pred             eEecchhhhhcccccCCHHHHHHHHHHcCCCCC
Confidence            568999998       78999999999999985

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=97.97  E-value=7.7e-05  Score=66.58  Aligned_cols=93  Identities=22%  Similarity=0.299  Sum_probs=68.8

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++.+++.|| ++||+.|....+.|.++.+++++.++.++.|.+|..                           +..++ 
T Consensus        97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia-  175 (261)
T PTZ00137         97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS-  175 (261)
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH-
Confidence            3567888888 899999999999999999999765677887776541                           14577 


Q ss_pred             HcCCCC-----CCCeEEEEe-CCCCCeee-c-CCCCCCHHHHHHHHHHhC
Q 018045          320 QKLQLG-----SFPTILFFP-KHSSKPIK-Y-PSERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~-----~~Pt~~~~~-~g~~~~~~-~-~~~~~~~~~l~~~i~~~~  361 (361)
                      +.|++.     ..|+.++++ +|+..... + ....++.+++.+.|+.++
T Consensus       176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq  225 (261)
T PTZ00137        176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQ  225 (261)
T ss_pred             HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence            788885     589999997 55532222 1 122478999999888764

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.97  E-value=0.00018  Score=56.10  Aligned_cols=99  Identities=13%  Similarity=0.250  Sum_probs=74.7

Q ss_pred             cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC-eEEEEe
Q 018045          256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP-TILFFP  334 (361)
Q Consensus       256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P-t~~~~~  334 (361)
                      ....++++. ...++.++|-|..+|-+.|.+|-..+.++++..++ -..++.||+++- +++. +.|.+. -| |++||-
T Consensus         8 ~~~VDqAI~-~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~-~a~IY~vDi~~V-pdfn-~~yel~-dP~tvmFF~   82 (133)
T PF02966_consen    8 GWHVDQAIL-SEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN-FAVIYLVDIDEV-PDFN-QMYELY-DPCTVMFFF   82 (133)
T ss_dssp             HHHHHHHHH-H-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTT-HCCH-HHTTS--SSEEEEEEE
T ss_pred             cchHHHHHh-ccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc-ceEEEEEEcccc-hhhh-cccccC-CCeEEEEEe
Confidence            345666654 45789999999999999999999999999999987 678899999999 9988 899999 77 466665


Q ss_pred             CCCCCeeecCCC--------CCCHHHHHHHHHH
Q 018045          335 KHSSKPIKYPSE--------RRDVDSLMAFVDA  359 (361)
Q Consensus       335 ~g~~~~~~~~~~--------~~~~~~l~~~i~~  359 (361)
                      +++...+.+..|        ..+.++|++.++.
T Consensus        83 rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~  115 (133)
T PF02966_consen   83 RNKHMMVDFGTGNNNKINWAFEDKQEFIDIIET  115 (133)
T ss_dssp             TTEEEEEESSSSSSSSBCS--SCHHHHHHHHHH
T ss_pred             cCeEEEEEecCCCccEEEEEcCcHHHHHHHHHH
Confidence            666434444432        2457888887764

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=97.94  E-value=6.9e-05  Score=64.88  Aligned_cols=90  Identities=23%  Similarity=0.379  Sum_probs=63.7

Q ss_pred             cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHHcCCC
Q 018045          271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQKLQL  324 (361)
Q Consensus       271 ~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~~~v  324 (361)
                      .+|+.|+++||+.|....+.|.+++++++..++.++.|.++..                          +..++ +.|++
T Consensus        28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia-~~yg~  106 (203)
T cd03016          28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVA-KLLGM  106 (203)
T ss_pred             EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHH-HHcCC
Confidence            4566888999999999999999999999866788888887642                          13566 77887


Q ss_pred             C----C----CCeEEEEe-CCCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 018045          325 G----S----FPTILFFP-KHSSKPIK-YP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       325 ~----~----~Pt~~~~~-~g~~~~~~-~~-~~~~~~~~l~~~i~~~~  361 (361)
                      .    +    +|+.++++ +|+..... +. ...++.+++.+.|++++
T Consensus       107 ~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~lq  154 (203)
T cd03016         107 IDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDALQ  154 (203)
T ss_pred             ccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHHh
Confidence            5    2    34678885 44422122 11 11367899999888763

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=97.94  E-value=4.4e-05  Score=64.65  Aligned_cols=43  Identities=19%  Similarity=0.209  Sum_probs=38.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .++++||.|+|+||++|.+ .|.|+++.+.|++.++.++.+.|+
T Consensus        24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n   66 (183)
T PRK10606         24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN   66 (183)
T ss_pred             CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence            5799999999999999975 889999999998767999999885

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=97.93  E-value=0.00028  Score=56.35  Aligned_cols=105  Identities=14%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             CceecCcccH-HHHHhhcCCCCcEEEEEECC--CChh-H-HhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCC
Q 018045          250 NLVTLNRTGM-ENLARLDHRQEPWLVVLYAP--WCQF-C-QAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL  324 (361)
Q Consensus       250 ~v~~l~~~~f-~~~~~~~~~~~~vlv~F~a~--wC~~-C-~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v  324 (361)
                      .|++|+++++ ++.-.   +++..+|.|.-.  -|.. + ..+...+.++|+.++++.+.|+.+|.+.. ..+. +.|++
T Consensus         3 ~~~~l~~~~~~~~~C~---~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~-~~~~-~~fgl   77 (130)
T cd02983           3 EIIELTSEDVFEETCE---EKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ-LDLE-EALNI   77 (130)
T ss_pred             ceEEecCHHHHHhhcc---CCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc-HHHH-HHcCC
Confidence            5788887665 44333   456666666432  1222 2 45678899999999993399999999999 7888 89999


Q ss_pred             C--CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 G--SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~--~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .  ++|+++++...+.+-..+.+ ..+.++|.+|++++
T Consensus        78 ~~~~~P~v~i~~~~~~KY~~~~~-~~t~e~i~~Fv~~~  114 (130)
T cd02983          78 GGFGYPAMVAINFRKMKFATLKG-SFSEDGINEFLREL  114 (130)
T ss_pred             CccCCCEEEEEecccCccccccC-ccCHHHHHHHHHHH
Confidence            5  49999999775531222445 79999999999875

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PRK02628 nadE NAD synthetase; Reviewed

Probab=97.90  E-value=0.00012  Score=74.81  Aligned_cols=145  Identities=14%  Similarity=0.046  Sum_probs=89.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc----C---CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT----G---RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~----~---~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      ++++|+.|||+||+++ .++.+.    +   .++..+++-+-...+++.+.++++++.+|+++.++.-+. .+.......
T Consensus       362 ~~vvvglSGGiDSal~l~l~~~a~~~lg~~~~~v~~v~mp~~~ss~~s~~~a~~la~~LGi~~~~i~I~~-~~~~~~~~l  440 (679)
T PRK02628        362 KKVVIGISGGLDSTHALLVAAKAMDRLGLPRKNILAYTMPGFATTDRTKNNAVALMKALGVTAREIDIRP-AALQMLKDI  440 (679)
T ss_pred             CeEEEECCCCHHHHHHHHHHHHHHHhhCCCcceEEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEEcHH-HHHHHHHHh
Confidence            7899999999999865 555543    3   457778884334567999999999999999998774332 122222221


Q ss_pred             CCC-C--CC--ccchhchhhccccHHHHHHHcc--CCEEEEeeeccCCccCccCCCcee-cCCCCcCCcCCCCCeEEEee
Q 018045           82 GLF-S--FY--EDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQ-VDPVFEGLEGGVGSLVKWNP  153 (361)
Q Consensus        82 ~~~-~--~~--~~~~~~cc~~~K~~pl~~~~~~--~~~~i~G~R~~Es~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~P  153 (361)
                      +.+ .  ..  +.....-|...++.-|......  ..++.|| +++|..   -..-... .|           +.--+.|
T Consensus       441 ~~~~~~~~~~~~~t~~N~qaR~R~~~L~~~An~~g~lvl~Tg-n~sE~~---~Gy~T~~~GD-----------~~~~~~~  505 (679)
T PRK02628        441 GHPFARGEPVYDVTFENVQAGERTQILFRLANQHGGIVIGTG-DLSELA---LGWCTYGVGD-----------HMSHYNV  505 (679)
T ss_pred             ccccccCCcccchhhhhhhHHHHHHHHHHHHhhcCcEEEcCC-chhhHH---hCceecCCCC-----------ccccccc
Confidence            111 0  00  0011223777777777666653  3456677 445542   1111111 11           2235899


Q ss_pred             CccCcHHHHHHHHHhCC
Q 018045          154 VANVKGNDIWNFLRTMD  170 (361)
Q Consensus       154 i~~W~~~dv~~yi~~~~  170 (361)
                      |.+....+|+..++..+
T Consensus       506 ~~~l~Kt~v~~l~~~~~  522 (679)
T PRK02628        506 NASVPKTLIQHLIRWVI  522 (679)
T ss_pred             ccCCcHHHHHHHHHHHH
Confidence            99999999999888664

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.88  E-value=4.5e-05  Score=56.17  Aligned_cols=75  Identities=12%  Similarity=0.310  Sum_probs=54.3

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcC--CCCCCCeEEEEeCCCCCeeecCCC
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKL--QLGSFPTILFFPKHSSKPIKYPSE  346 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~--~v~~~Pt~~~~~~g~~~~~~~~~~  346 (361)
                      -++.|+.+||++|+.....|+++...+.  ++.+..+|++.+.   .++. ...  ++.++|++++  +|+  .   .||
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~~~~~~~~el~-~~~~~~~~~vP~ifi--~g~--~---igg   71 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIHAEGISKADLE-KTVGKPVETVPQIFV--DQK--H---IGG   71 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECCCChHHHHHHH-HHHCCCCCcCCEEEE--CCE--E---EcC
Confidence            4789999999999999999999998764  4889999998651   2444 333  3588999753  565  2   232


Q ss_pred             CCCHHHHHHHHHH
Q 018045          347 RRDVDSLMAFVDA  359 (361)
Q Consensus       347 ~~~~~~l~~~i~~  359 (361)
                         .++|.++++.
T Consensus        72 ---~~~~~~~~~~   81 (85)
T PRK11200         72 ---CTDFEAYVKE   81 (85)
T ss_pred             ---HHHHHHHHHH
Confidence               4677776653

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=97.88  E-value=8.1e-05  Score=60.10  Aligned_cols=45  Identities=18%  Similarity=0.355  Sum_probs=38.9

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG  312 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~  312 (361)
                      .+++++|.|| +.||+.|....|.+.++.++++..++.|+.|..+.
T Consensus        21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~   66 (140)
T cd02971          21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS   66 (140)
T ss_pred             CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            5789999999 78999999999999999999865578888887754

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=97.87  E-value=0.00019  Score=54.11  Aligned_cols=88  Identities=19%  Similarity=0.352  Sum_probs=68.5

Q ss_pred             cHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCC
Q 018045          258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      .+++++.   .++.++|-|+.++++   .+...|.++|+.+.+ .+.|+.+.   + .++. +++.+. .|++++|++..
T Consensus         9 ~l~~~~~---~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~-~~~F~~~~---~-~~~~-~~~~~~-~~~i~l~~~~~   75 (97)
T cd02981           9 ELEKFLD---KDDVVVVGFFKDEES---EEYKTFEKVAESLRD-DYGFGHTS---D-KEVA-KKLKVK-PGSVVLFKPFE   75 (97)
T ss_pred             HHHHHhc---cCCeEEEEEECCCCc---HHHHHHHHHHHhccc-CCeEEEEC---h-HHHH-HHcCCC-CCceEEeCCcc
Confidence            3455554   889999999999987   577899999999986 68887765   3 5777 677765 59999997754


Q ss_pred             CCeeecCCCCCCHHHHHHHHHH
Q 018045          338 SKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       338 ~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      .....|.| ..+.++|.+||..
T Consensus        76 ~~~~~y~g-~~~~~~l~~fi~~   96 (97)
T cd02981          76 EEPVEYDG-EFTEESLVEFIKD   96 (97)
T ss_pred             cCCccCCC-CCCHHHHHHHHHh
Confidence            44677887 5779999999974

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=97.85  E-value=8.3e-05  Score=52.46  Aligned_cols=68  Identities=22%  Similarity=0.358  Sum_probs=47.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHc----CCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK----LQLGSFPTILFFPKHSSKPIKYPSERR  348 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~----~~v~~~Pt~~~~~~g~~~~~~~~~~~~  348 (361)
                      ++.|+++||++|+.+...+.+.       ++.+..+|++.+ .... +.    .++.++|++++  +|+    ...|  .
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~~-------~i~~~~~~i~~~-~~~~-~~~~~~~~~~~vP~i~~--~~~----~i~g--~   64 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDER-------GIPFEEVDVDED-PEAL-EELKKLNGYRSVPVVVI--GDE----HLSG--F   64 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHHC-------CCCeEEEeCCCC-HHHH-HHHHHHcCCcccCEEEE--CCE----EEec--C
Confidence            6789999999999998887762       477778888876 4433 33    36789999976  332    2233  4


Q ss_pred             CHHHHHHHH
Q 018045          349 DVDSLMAFV  357 (361)
Q Consensus       349 ~~~~l~~~i  357 (361)
                      +.+.|.++|
T Consensus        65 ~~~~l~~~~   73 (73)
T cd02976          65 RPDKLRALL   73 (73)
T ss_pred             CHHHHHhhC
Confidence            566666653

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=97.84  E-value=0.00022  Score=55.23  Aligned_cols=100  Identities=9%  Similarity=0.096  Sum_probs=72.0

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEE---ECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCchHHHHHcCCCCC-
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVL---YAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGS-  326 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F---~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~~~l~~~~~~v~~-  326 (361)
                      .++|.+|.....    ..+.+++++   |+..-..-......+.++|+.++ + .+.|+.+|.+.. .... +.|++.. 
T Consensus         2 ~~~~~en~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g-ki~Fv~~D~~~~-~~~l-~~fgl~~~   74 (111)
T cd03073           2 GHRTKDNRAQFT----KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR-KLNFAVADKEDF-SHEL-EEFGLDFS   74 (111)
T ss_pred             CeeccchHHHhc----cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC-eEEEEEEcHHHH-HHHH-HHcCCCcc
Confidence            456777777764    233334432   22233455678899999999999 7 799999999988 6678 8999984 


Q ss_pred             ---CCeEEEEeCCCCCeeecCCCCC-CHHHHHHHHHHh
Q 018045          327 ---FPTILFFPKHSSKPIKYPSERR-DVDSLMAFVDAL  360 (361)
Q Consensus       327 ---~Pt~~~~~~g~~~~~~~~~~~~-~~~~l~~~i~~~  360 (361)
                         +|++.++..... -....+ .. +.++|.+|++++
T Consensus        75 ~~~~P~~~i~~~~~~-KY~~~~-~~~t~e~i~~F~~~f  110 (111)
T cd03073          75 GGEKPVVAIRTAKGK-KYVMEE-EFSDVDALEEFLEDF  110 (111)
T ss_pred             cCCCCEEEEEeCCCC-ccCCCc-ccCCHHHHHHHHHHh
Confidence               999999974331 222344 57 999999999875

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=97.82  E-value=7.8e-05  Score=60.40  Aligned_cols=45  Identities=20%  Similarity=0.301  Sum_probs=39.4

Q ss_pred             CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcCC---CeEEEEEEcCC
Q 018045          268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAGN---GVKVGKFRADG  312 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~~---~v~~~~vd~~~  312 (361)
                      .+++++|.||++||++ |....+.+.++.+.++..   ++.++.|..+.
T Consensus        21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~   69 (142)
T cd02968          21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP   69 (142)
T ss_pred             CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence            5789999999999998 999999999999999763   48998888753

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=1.9e-05  Score=67.21  Aligned_cols=67  Identities=16%  Similarity=0.306  Sum_probs=62.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSS  338 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~  338 (361)
                      ..+..++.|||+||.+|.+|...++.+++..+  ++.|++++.+.. ++++ ..+.+..+|+++++..|+.
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~--~~~~~k~~a~~~-~eis-~~~~v~~vp~~~~~~~~~~   82 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK--NAQFLKLEAEEF-PEIS-NLIAVEAVPYFVFFFLGEK   82 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh--hheeeeehhhhh-hHHH-HHHHHhcCceeeeeecchh
Confidence            78999999999999999999999999999994  599999999999 9999 9999999999999987774

>PRK13599 putative peroxiredoxin; Provisional

Probab=97.82  E-value=0.00013  Score=63.62  Aligned_cols=92  Identities=15%  Similarity=0.208  Sum_probs=67.6

Q ss_pred             CCc-EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHHc
Q 018045          269 QEP-WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK  321 (361)
Q Consensus       269 ~~~-vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~  321 (361)
                      ++. +|+.|+++||+.|....+.|.+++++++..++.++.|.+|..                          +..++ +.
T Consensus        28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va-~~  106 (215)
T PRK13599         28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS-NQ  106 (215)
T ss_pred             CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH-HH
Confidence            454 567889999999999999999999999765788888887652                          03466 67


Q ss_pred             CCCC-------CCCeEEEEeC-CCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 018045          322 LQLG-------SFPTILFFPK-HSSKPIK-YP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       322 ~~v~-------~~Pt~~~~~~-g~~~~~~-~~-~~~~~~~~l~~~i~~~~  361 (361)
                      |++.       .+|+++++.. |+..... |. ...++.+++.+.|++++
T Consensus       107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~lq  156 (215)
T PRK13599        107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKALQ  156 (215)
T ss_pred             cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence            8773       5799999964 5433222 22 12368999999998764

>PRK13189 peroxiredoxin; Provisional

Probab=97.81  E-value=0.00014  Score=63.80  Aligned_cols=93  Identities=18%  Similarity=0.229  Sum_probs=65.6

Q ss_pred             CCC-cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHH
Q 018045          268 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ  320 (361)
Q Consensus       268 ~~~-~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~  320 (361)
                      .++ .+|+.|+++||+.|....+.|.+++++++..++.++.|.+|..                          +..++ +
T Consensus        34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia-~  112 (222)
T PRK13189         34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA-K  112 (222)
T ss_pred             CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH-H
Confidence            355 4455778999999999999999999999765788888876532                          13566 6


Q ss_pred             cCCCC-------CCCeEEEEe-CCCCCeeecC--CCCCCHHHHHHHHHHhC
Q 018045          321 KLQLG-------SFPTILFFP-KHSSKPIKYP--SERRDVDSLMAFVDALR  361 (361)
Q Consensus       321 ~~~v~-------~~Pt~~~~~-~g~~~~~~~~--~~~~~~~~l~~~i~~~~  361 (361)
                      .|++.       .+|++++++ +|+.....+.  ...++.+++...|+.++
T Consensus       113 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  163 (222)
T PRK13189        113 KLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKALQ  163 (222)
T ss_pred             HhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            77764       468899996 4543222221  12468899998887653

>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B

Probab=97.80  E-value=7.6e-05  Score=67.52  Aligned_cols=106  Identities=17%  Similarity=0.246  Sum_probs=67.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH----hcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR----SKGL   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~----~~~~   83 (361)
                      .+|.+.+|||.||+++ .++.+... ++..+.++.+..-.+-.++++.+++++|++.+++..+...+.....    ....
T Consensus        16 ~~v~~~LSGGlDSs~va~~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (269)
T cd01991          16 VPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARRVAEHLGTEHHEVEFTPADLLAALPDVIWELDE   95 (269)
T ss_pred             CceEEeecccHHHHHHHHHHHHhhCCCCceEEEeeCCCCCChHHHHHHHHHHhCCcceEEEcCHHHHHHHHHHHHHHhCC
Confidence            6899999999999877 77776544 3667777766433334789999999999998888766543333221    1111


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCC
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQS  122 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es  122 (361)
                      +      ...|.. .-...+.+..+  +.+++++|.-+||-
T Consensus        96 p------~~~~~~-~~~~~l~~~a~~~~~~v~l~G~g~Del  129 (269)
T cd01991          96 P------FADSSA-IPLYLLSRLARKHGIKVVLSGEGADEL  129 (269)
T ss_pred             C------CCCcHH-HHHHHHHHHHHHhCCEEEEecCCcccc
Confidence            1      111222 22222333333  34799999999995

This domain is always found associated n-terminal amidotransferase domain. Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase .

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6

Probab=97.75  E-value=3.8e-05  Score=71.93  Aligned_cols=149  Identities=15%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             EEEecchHHHHHH-HHHHHcC-CCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHHHH----Hhc----
Q 018045           13 AIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQALV----RSK----   81 (361)
Q Consensus        13 ~vs~SGGKDS~~l-~l~~~~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~~~----~~~----   81 (361)
                      +++||||=||+++ .++++.+ .+|..+++|+|.. .+-.+.+++-+.++|. +++++.......++++    ...    
T Consensus         1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~-~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~anA~Ye   79 (388)
T PF00764_consen    1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQP-DEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKANALYE   79 (388)
T ss_dssp             EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST--S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHTT--BT
T ss_pred             CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCc-HHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHHHHHhC
Confidence            6899999997655 6666655 8899999999983 3677888899999998 8887755443332221    111    


Q ss_pred             CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC--
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV--  157 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W--  157 (361)
                      |...+...-.|.+- ..+..   +..+  +.++++-|-..-.....|....+...++          .+-.+.|.-+|  
T Consensus        80 g~YpL~tsl~RplI-a~~~v---~~A~~~ga~~vaHG~TgkGNDqvRFe~~~~al~P----------~l~viaP~Rd~~~  145 (388)
T PF00764_consen   80 GRYPLSTSLARPLI-AKKLV---EVAREEGADAVAHGCTGKGNDQVRFELSIRALAP----------ELKVIAPWRDWEF  145 (388)
T ss_dssp             TTB--CCCCHHHHH-HHHHH---HHHHHHT-SEEE----TTSSHHHHHHHHHHHHST----------TSEEE-GGGHHHH
T ss_pred             CCccccccchHHHH-HHHHH---HHHHHcCCeEEeccCCcCCCchhHHHHHHHHhCc----------CCcEecccchhhh
Confidence            11111111111111 11111   1112  5567765553322212454444444443          34578999987  


Q ss_pred             cHHHHHHHHHhCCCCCCcc
Q 018045          158 KGNDIWNFLRTMDVPINSL  176 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~l  176 (361)
                      +.+|..+|++++|||+..-
T Consensus       146 ~R~~~i~ya~~~gIpv~~~  164 (388)
T PF00764_consen  146 SREEEIEYAKKHGIPVPVT  164 (388)
T ss_dssp             HHHHHHHHHHHTT----SS
T ss_pred             hHHHHHHHHHHcCCCCCCC
Confidence            7899999999999998654

3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....

>PRK13191 putative peroxiredoxin; Provisional

Probab=97.74  E-value=0.00023  Score=62.08  Aligned_cols=93  Identities=13%  Similarity=0.245  Sum_probs=65.8

Q ss_pred             CCCcEE-EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------------hHHHHH
Q 018045          268 RQEPWL-VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------------KEYAKQ  320 (361)
Q Consensus       268 ~~~~vl-v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------------~~l~~~  320 (361)
                      .++.++ +.|+++||+.|....+.|.+++++++..++.++.|.+|...                          ..++ +
T Consensus        32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia-~  110 (215)
T PRK13191         32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA-K  110 (215)
T ss_pred             CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH-H
Confidence            355555 47789999999999999999999997667888888876431                          3455 5


Q ss_pred             cCCCC-------CCCeEEEEeC-CCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 018045          321 KLQLG-------SFPTILFFPK-HSSKPIK-YP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       321 ~~~v~-------~~Pt~~~~~~-g~~~~~~-~~-~~~~~~~~l~~~i~~~~  361 (361)
                      .|++.       ..|++++++. |+...+. +. .-.++.+++...|+.++
T Consensus       111 ~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~alq  161 (215)
T PRK13191        111 RLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRALQ  161 (215)
T ss_pred             HcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence            67763       3688889964 4432221 11 12378999999988764

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]

Probab=97.73  E-value=0.00023  Score=62.53  Aligned_cols=171  Identities=19%  Similarity=0.259  Sum_probs=98.6

Q ss_pred             HhHhC-CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            5 LEKFG-NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         5 ~~~~~-~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      -++-+ ++++++.|||-||+++ -|+.+ .+.....+|+|+|.. --|..+..+-+.+.+|++++.+......+..+   
T Consensus        16 r~~vg~~kvi~alSGGVDSsv~a~L~~~AiGd~l~cvfVD~GLlR~~E~e~V~~~f~~~~~~nl~~VdA~~~Fl~~L---   92 (315)
T COG0519          16 REQVGDGKVILALSGGVDSSVAAVLAHRAIGDQLTCVFVDHGLLRKGEAEQVVEMFREHLGLNLIVVDAKDRFLSAL---   92 (315)
T ss_pred             HHHhCCceEEEEecCCCcHHHHHHHHHHHhhcceEEEEecCCcccCCcHHHHHHHHHhhcCCceEEEchHHHHHHHh---
Confidence            34445 6899999999999877 56666 688899999999954 34555556667777999999886544332222   


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCc--cCccCCCceecCCCCcCCcCCCCC---eEEEee
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSP--GTRSEIPVVQVDPVFEGLEGGVGS---LVKWNP  153 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~--~~R~~~~~~~~~~~~~~~~~~~~~---~~~~~P  153 (361)
                      .|..- |. ..+.--...-++.+.+..+..  +..+-|+=.-|-.  +......+-+-.+     .++.+.   +--+-|
T Consensus        93 ~GvtD-PE-~KRKiIG~~FI~VFe~ea~k~~~~~LaQGTiYpDvIES~~g~~~~IKSHHN-----VGGLP~~m~lkLvEP  165 (315)
T COG0519          93 KGVTD-PE-EKRKIIGREFIEVFEEEAKKLGAEFLAQGTIYPDVIESGTGKAGTIKSHHN-----VGGLPEDMKLKLVEP  165 (315)
T ss_pred             cCCCC-HH-HHHHHHHHHHHHHHHHHHHhCCcceEEecccccceeeecCCCCCccccccc-----cCCCccccceeeeHH
Confidence            22211 00 011111111123333333322  2334444333211  1011111101000     011111   234789


Q ss_pred             CccCcHHHHHHHHHhCCCCCCccccCCCCCCC
Q 018045          154 VANVKGNDIWNFLRTMDVPINSLHSQGYISIG  185 (361)
Q Consensus       154 i~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~G  185 (361)
                      |-+.-.++|...-++.|||-.-+|.+-|+-.|
T Consensus       166 Lr~LfKDEVR~lg~~LGlp~~iv~RhPFPGPG  197 (315)
T COG0519         166 LRELFKDEVRELGRELGLPEEIVYRHPFPGPG  197 (315)
T ss_pred             HHHHhHHHHHHHHHHhCCCHHHhccCCCCCCC
Confidence            99999999999999999999999998887665

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain

Probab=97.72  E-value=0.00016  Score=62.98  Aligned_cols=126  Identities=14%  Similarity=0.181  Sum_probs=76.7

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceE-EEc--cCC-C--CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRV-FSL--DTG-R--LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v-~~~--dtg-~--~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +++++|||||||++. +.+.+. .++.. +.+  .+. .  ...-..+.++..++.+|+++..+.....           
T Consensus         2 k~~~l~SGGKDS~~al~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~~~-----------   69 (223)
T TIGR00290         2 KVAALISGGKDSCLALYHALKE-HEVISLVNIMPENEESYMFHGVNAHLTDLQAESIGIPLIKLYTEGT-----------   69 (223)
T ss_pred             cEEEEecCcHHHHHHHHHHHHh-CeeEEEEEEecCCCCcccccccCHHHHHHHHHHcCCCeEEeecCCC-----------
Confidence            578899999999866 666665 55433 222  221 1  1122347889999999999865422111           


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                                  ..-..+.+.++++  +.+.+++|--..+.  +|......-..          -++..+.||..-..++
T Consensus        70 ------------~e~~~e~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~v~~~----------lgl~~~~PLW~~~~~~  125 (223)
T TIGR00290        70 ------------EEDEVEELKGILHTLDVEAVVFGAIYSEY--QKTRIERVCRE----------LGLKSFAPLWHRDPEK  125 (223)
T ss_pred             ------------ccHHHHHHHHHHHHcCCCEEEECCcccHH--HHHHHHHHHHh----------cCCEEeccccCCCHHH
Confidence                        1123344555554  56788999888876  34332221111          1567899999988888


Q ss_pred             HHHHHHhCCCC
Q 018045          162 IWNFLRTMDVP  172 (361)
Q Consensus       162 v~~yi~~~~lp  172 (361)
                      +..=+...|+.
T Consensus       126 ll~e~i~~G~~  136 (223)
T TIGR00290       126 LMEEFVEEKFE  136 (223)
T ss_pred             HHHHHHHcCCe
Confidence            77666666653

Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.

>PRK13981 NAD synthetase; Provisional

Probab=97.72  E-value=0.0004  Score=69.37  Aligned_cols=66  Identities=21%  Similarity=0.300  Sum_probs=52.8

Q ss_pred             HHHhHhC-CcEEEEecchHHHHHH-HHHHHc-CC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 018045            3 RALEKFG-NDIAIAFSGAEDVALI-EYAHLT-GR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF   68 (361)
Q Consensus         3 ~~~~~~~-~~i~vs~SGGKDS~~l-~l~~~~-~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~   68 (361)
                      ..++..+ ++++|++|||-||+++ .|+.+. ++ ++..+++.+....+++++-++.+++.+|++++++.
T Consensus       273 ~~~~~~~~~~~vvglSGGiDSa~~a~la~~a~g~~~v~~~~~p~~~~~~~~~~~a~~~a~~lgi~~~~i~  342 (540)
T PRK13981        273 DYVRKNGFPGVVLGLSGGIDSALVAAIAVDALGAERVRAVMMPSRYTSEESLDDAAALAKNLGVRYDIIP  342 (540)
T ss_pred             HHHHHcCCCeEEEECCCCHHHHHHHHHHHHHhCcCcEEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence            3344444 6899999999999877 777664 54 58888998887788899999999999999987763

>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.66  E-value=0.00038  Score=58.06  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=84.6

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|..++..+|.+-+...+.+-.|+|..|...-+.|.-+...++.++..|..  ++|+++=.+..    . -.|-=...|
T Consensus        91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~--iKFVki~at~c----I-pNYPe~nlP  163 (240)
T KOG3170|consen   91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ--IKFVKIPATTC----I-PNYPESNLP  163 (240)
T ss_pred             cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc--ceEEecccccc----c-CCCcccCCC
Confidence            5689999999988877777888999999999999999999999999999987  99998865544    2 356667899


Q ss_pred             eEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045          329 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       329 t~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~  359 (361)
                      |+++|..|..+     +..+.|...+.+++..++-+
T Consensus       164 Tl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~q  199 (240)
T KOG3170|consen  164 TLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQ  199 (240)
T ss_pred             eEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHh
Confidence            99999988642     34555556788898888754

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.65  E-value=0.00031  Score=69.75  Aligned_cols=97  Identities=10%  Similarity=0.100  Sum_probs=73.5

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      -..|+++..+.+.+ . .+..-+-.|+++.|++|......+++++...+  +|.+-.||...+ ++++ ++|+|.++|++
T Consensus       100 ~~~l~~~~~~~i~~-~-~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id~~~~-~~~~-~~~~v~~VP~~  173 (517)
T PRK15317        100 PPKLDQEVIEQIKA-L-DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMIDGALF-QDEV-EARNIMAVPTV  173 (517)
T ss_pred             CCCCCHHHHHHHHh-c-CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEEchhC-HhHH-HhcCCcccCEE
Confidence            34465555554443 1 23445889999999999999999999998755  599999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++  +|+   ..+.| ..+.++|.+.+.+
T Consensus       174 ~i--~~~---~~~~g-~~~~~~~~~~~~~  196 (517)
T PRK15317        174 FL--NGE---EFGQG-RMTLEEILAKLDT  196 (517)
T ss_pred             EE--CCc---EEEec-CCCHHHHHHHHhc
Confidence            76  554   33445 5777777777653

>KOG2840 consensus Uncharacterized conserved protein with similarity to predicted ATPase of the PP-loop superfamily [General function prediction only]

Probab=97.62  E-value=1.7e-05  Score=71.03  Aligned_cols=159  Identities=16%  Similarity=0.249  Sum_probs=103.8

Q ss_pred             CCcEEEEecchHHHHHH-HHHHH----c--CCCceEEEccCCC--CcHHHHHHHHHHHHHhCCcEEEEcCChH----HHH
Q 018045            9 GNDIAIAFSGAEDVALI-EYAHL----T--GRPFRVFSLDTGR--LNPETYRFFDEVEKHFGIRIEYMFPDAV----EVQ   75 (361)
Q Consensus         9 ~~~i~vs~SGGKDS~~l-~l~~~----~--~~~i~v~~~dtg~--~~pet~~~v~~~~~~~g~~i~~~~p~~~----~~~   75 (361)
                      |++|.++-|||||||++ +....    +  +....++-+|.|.  .-...+..+.+...+||+++.++++...    ...
T Consensus        51 ge~v~igasGgkdstvlA~v~~~Ln~r~~~g~~l~Lls~degi~gyrd~sl~avkrn~~~~~lPL~ivs~~dl~~~~tmd  130 (347)
T KOG2840|consen   51 GERVAIGASGGKDSTVLAYVLDALNERHDYGLRLFLLSIDEGIRGYRDDSLEAVKRNGVQYGLPLCIVSYKDLYGEWTMD  130 (347)
T ss_pred             CCccccccccchhHHHHHHHHHHhhhhcCCCceeeeeeccccccceeccHHHHHHHhhhhcCCceEEecHHHHhccchHH
Confidence            36799999999999988 43333    2  3445678889884  3456777889999999999999877532    123


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCC----cC---CCC
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGL----EG---GVG  146 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~----~~---~~~  146 (361)
                      +.+...|..   ..+..-.|.+++.+.+.+...  +..-..||+.+||-. .+-.+.++..+.....+    +.   ..+
T Consensus       131 ~i~~~i~~~---~rn~ctfCgv~RrqaL~~ga~~l~~~~~~tghnaDD~a-etvl~n~lrgds~rl~R~~~~~t~~~e~~  206 (347)
T KOG2840|consen  131 EIVSEIGQE---IRNNCTFCGVFRRQALDRGADVLGAAELVTGHNADDWA-ETVLMNLLRGDSARLERLTEITTPSLEMG  206 (347)
T ss_pred             HHHHHHhhh---hhcCceeecHHHHHHHHhhccccchhhhhhcccchHHH-HHHHHHHHHhHHHHhhhccccccCccccC
Confidence            333333321   123334477888877777665  344678999999984 66555555433221111    10   112


Q ss_pred             CeEEEeeCccCcHHHHHHHHHhCCC
Q 018045          147 SLVKWNPVANVKGNDIWNFLRTMDV  171 (361)
Q Consensus       147 ~~~~~~Pi~~W~~~dv~~yi~~~~l  171 (361)
                      .+.+.+||-+=++.+|-.|.....+
T Consensus       207 ~~~r~kplk~~~~keivLya~~~~L  231 (347)
T KOG2840|consen  207 IIPRLKPLKYASEKEIVLYASLSKL  231 (347)
T ss_pred             ccccccccccchhhehhhHHHHHHH
Confidence            3678999999999999888766644

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.61  E-value=0.00044  Score=61.03  Aligned_cols=81  Identities=14%  Similarity=0.325  Sum_probs=60.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE--------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR--------------------------------------  309 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd--------------------------------------  309 (361)
                      +.+.+++.|.-+.||+|+++.+.+.++.+.    ++.+..+.                                      
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~  181 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP  181 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence            567889999999999999999998877531    23332221                                      


Q ss_pred             ------cCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          310 ------ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       310 ------~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                            ++++ ..++ ++++|+++|+++ +.+|+  .+  .| ..+.++|.++|++.
T Consensus       182 ~~c~~~v~~~-~~la-~~lgi~gTPtiv-~~~G~--~~--~G-~~~~~~L~~~l~~~  230 (232)
T PRK10877        182 ASCDVDIADH-YALG-VQFGVQGTPAIV-LSNGT--LV--PG-YQGPKEMKAFLDEH  230 (232)
T ss_pred             ccccchHHHh-HHHH-HHcCCccccEEE-EcCCe--Ee--eC-CCCHHHHHHHHHHc
Confidence                  1122 5678 899999999999 66776  22  44 78999999999875

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.61  E-value=0.00034  Score=70.05  Aligned_cols=95  Identities=12%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             CceecCcccHHHHHhhcCCCCcE-EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      .-..|+.+..+.+..   =++++ +-.|.+++|+.|......+++++....  ++..-.||.... ++++ ++|+|.++|
T Consensus       459 ~~~~l~~~~~~~i~~---~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~-~~~~-~~~~v~~vP  531 (555)
T TIGR03143       459 PGQPLGEELLEKIKK---ITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF-PDLK-DEYGIMSVP  531 (555)
T ss_pred             CCCCCCHHHHHHHHh---cCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc-HHHH-HhCCceecC
Confidence            444565555554443   35665 556689999999999999999998875  499999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      ++++  +|+   ..+.| ..+.+++.++|
T Consensus       532 ~~~i--~~~---~~~~G-~~~~~~~~~~~  554 (555)
T TIGR03143       532 AIVV--DDQ---QVYFG-KKTIEEMLELI  554 (555)
T ss_pred             EEEE--CCE---EEEee-CCCHHHHHHhh
Confidence            9887  454   33456 56889888876

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=97.58  E-value=0.00055  Score=59.07  Aligned_cols=92  Identities=10%  Similarity=0.185  Sum_probs=66.2

Q ss_pred             CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045          268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~  319 (361)
                      .++.++|.||+ +||+.|....+.+.++++++...++.++.|+++...                           .+++ 
T Consensus        35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia-  113 (199)
T PTZ00253         35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIA-  113 (199)
T ss_pred             CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHH-
Confidence            46788999995 889999999999999999998767888888876431                           3466 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeec-C--CCCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKY-P--SERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~-~--~~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      .+|+.+++++.+...... .  ...++.+++.+.|+.+
T Consensus       114 ~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~  163 (199)
T PTZ00253        114 RSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF  163 (199)
T ss_pred             HHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            678875      368999996544321111 1  1236788888887765

>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]

Probab=97.58  E-value=0.002  Score=59.52  Aligned_cols=148  Identities=20%  Similarity=0.286  Sum_probs=85.6

Q ss_pred             CcEEEEecchHH-HHHHHHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHHHH----HhcC
Q 018045           10 NDIAIAFSGAED-VALIEYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQALV----RSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKD-S~~l~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~~~~~~----~~~~   82 (361)
                      .+|++|||||=| |+++.++.+ .+.++..+++|.|.. .+-++.+++-+..+|.. ..++........+++    ....
T Consensus         5 kkvvLAYSGGLDTSv~i~wL~e~~~~eVia~tadvGQ~-eed~~~i~eKA~~~Ga~~~~viD~reeF~~~yi~~~i~ana   83 (403)
T COG0137           5 KKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQP-EEDLDAIREKALELGAEEAYVIDAREEFVEDYIFPAIKANA   83 (403)
T ss_pred             cEEEEEecCCccHHHHHHHHHHhcCceEEEEEEeCCCC-hHHhHHHHHHHHHhCCceEEEeecHHHHHHHHHHHHHHhhc
Confidence            589999999999 556665555 558888999999975 68899999999999986 555533332222222    1111


Q ss_pred             CCCCCccchhchhhccccHHHH-----HHHc--cCCEEEEee---eccCCccCccCCCceecCCCCcCCcCCCCCeEEEe
Q 018045           83 LFSFYEDGHQECCRVRKVRPLR-----RALK--GLRAWITGQ---RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN  152 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~-----~~~~--~~~~~i~G~---R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (361)
                      +   +.....--+.+  -+|+-     .+.+  +.+++.-|-   =-||   -|....+...+          +.+-.+.
T Consensus        84 ~---Yeg~YpL~Tal--aRPLIak~lVe~A~k~ga~avaHGcTGKGNDQ---vRFe~~~~al~----------p~lkiiA  145 (403)
T COG0137          84 L---YEGVYPLGTAL--ARPLIAKKLVEAAKKEGADAVAHGCTGKGNDQ---VRFELAILALN----------PDLKIIA  145 (403)
T ss_pred             e---eeccccccchh--hHHHHHHHHHHHHHHcCCCEEEecCCCCCCce---eeeeeehhhhC----------CCcEEEe
Confidence            1   11000000000  01211     1111  445666443   2222   23333333223          2445677


Q ss_pred             eCccC--cHHHHHHHHHhCCCCCCcc
Q 018045          153 PVANV--KGNDIWNFLRTMDVPINSL  176 (361)
Q Consensus       153 Pi~~W--~~~dv~~yi~~~~lp~~~l  176 (361)
                      |.-+|  +.++.-+|..++|||+.--
T Consensus       146 P~Rew~~~R~~~i~Ya~~~gipv~~~  171 (403)
T COG0137         146 PWREWNLTREEEIEYAEEHGIPVKAT  171 (403)
T ss_pred             ehhhhccChHHHHHHHHHcCCCcccc
Confidence            77654  8899999999999999544

>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=97.56  E-value=0.00076  Score=49.89  Aligned_cols=96  Identities=14%  Similarity=0.216  Sum_probs=73.1

Q ss_pred             cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-chHHHHHcCCCC----CCC-e
Q 018045          256 RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-QKEYAKQKLQLG----SFP-T  329 (361)
Q Consensus       256 ~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-~~~l~~~~~~v~----~~P-t  329 (361)
                      ..+|..++.   ....|+|.|..+--..-. ....+.++|+..+| .-+++.|||... ...|| ++++|.    --| .
T Consensus         9 ~KdfKKLLR---Tr~NVLvLy~ks~k~a~~-~Lk~~~~~A~~vkG-~gT~~~vdCgd~e~kKLC-KKlKv~~~~kp~~~~   82 (112)
T cd03067           9 HKDFKKLLR---TRNNVLVLYSKSAKSAEA-LLKLLSDVAQAVKG-QGTIAWIDCGDSESRKLC-KKLKVDPSSKPKPVE   82 (112)
T ss_pred             hHHHHHHHh---hcCcEEEEEecchhhHHH-HHHHHHHHHHHhcC-ceeEEEEecCChHHHHHH-HHHccCCCCCCCcch
Confidence            367888876   788899998887544333 34588999999998 678899999873 27899 999998    445 4


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +.-|++|.- ...|+- ..+..+|+.|++.
T Consensus        83 LkHYKdG~f-HkdYdR-~~t~kSmv~FlrD  110 (112)
T cd03067          83 LKHYKDGDF-HTEYNR-QLTFKSMVAFLRD  110 (112)
T ss_pred             hhcccCCCc-cccccc-hhhHHHHHHHhhC
Confidence            566788874 556665 7899999999864

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.

>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]

Probab=97.55  E-value=0.00025  Score=59.71  Aligned_cols=105  Identities=17%  Similarity=0.221  Sum_probs=81.8

Q ss_pred             Cceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      -|.++ +.+.|-+.+...-+.-.++|..|-+.-+-|..+...+.-||..|+-  ++|.+|-...-  ... .+|....+|
T Consensus       139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~--vKFckikss~~--gas-~~F~~n~lP  213 (273)
T KOG3171|consen  139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI--VKFCKIKSSNT--GAS-DRFSLNVLP  213 (273)
T ss_pred             eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc--eeEEEeeeccc--cch-hhhcccCCc
Confidence            57888 4577888776333445789999999999999999999999999975  99999876644  445 899999999


Q ss_pred             eEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHH
Q 018045          329 TILFFPKHSSK-----PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       329 t~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++++|++|..+     +..-.|....+.+|..||+.
T Consensus       214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e  249 (273)
T KOG3171|consen  214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNE  249 (273)
T ss_pred             eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            99999999842     11222345677888888875

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.54  E-value=0.00037  Score=47.42  Aligned_cols=52  Identities=21%  Similarity=0.450  Sum_probs=40.5

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEE
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILF  332 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~  332 (361)
                      ++.|..++|++|+..+..|++.       ++.+-.+|++.+.   .++. +..+..++|++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~~-------~i~y~~~dv~~~~~~~~~l~-~~~g~~~~P~v~i   55 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDEK-------GIPYEEVDVDEDEEAREELK-ELSGVRTVPQVFI   55 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-------TBEEEEEEGGGSHHHHHHHH-HHHSSSSSSEEEE
T ss_pred             cEEEEcCCCcCHHHHHHHHHHc-------CCeeeEcccccchhHHHHHH-HHcCCCccCEEEE
Confidence            5789999999999999888432       5889999998871   2333 3348999999886

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=97.51  E-value=0.00025  Score=52.31  Aligned_cols=74  Identities=14%  Similarity=0.269  Sum_probs=52.1

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCC--CCCCCeEEEEeCCCCCeeecCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~--v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      ++.|+.+||++|.+++..|+++...+.  ++.+..+|++.+.   .++. ...+  +.++|++++  +|+  .   .|| 
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~~~~~~~~~l~-~~~g~~~~tVP~ifi--~g~--~---igG-   70 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIHAEGISKADLE-KTVGKPVETVPQIFV--DEK--H---VGG-   70 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECCCCHHHHHHHH-HHhCCCCCCcCeEEE--CCE--E---ecC-
Confidence            678999999999999999998876554  3778888887541   2455 4555  378999843  454  1   343 


Q ss_pred             CCHHHHHHHHHH
Q 018045          348 RDVDSLMAFVDA  359 (361)
Q Consensus       348 ~~~~~l~~~i~~  359 (361)
                        .++|.+++++
T Consensus        71 --~~dl~~~~~~   80 (86)
T TIGR02183        71 --CTDFEQLVKE   80 (86)
T ss_pred             --HHHHHHHHHh
Confidence              4777777654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.48  E-value=0.00027  Score=51.49  Aligned_cols=80  Identities=20%  Similarity=0.284  Sum_probs=58.5

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS  352 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~  352 (361)
                      +++|..+.|+-|..+...+..+....   .+.+-.||++.+ +++. .+|+. .+|.+.+=..++........+..+.+.
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~~---~~~l~~vDI~~d-~~l~-~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~~   75 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAEF---PFELEEVDIDED-PELF-EKYGY-RIPVLHIDGIRQFKEQEELKWRFDEEQ   75 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTTS---TCEEEEEETTTT-HHHH-HHSCT-STSEEEETT-GGGCTSEEEESSB-HHH
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhhc---CceEEEEECCCC-HHHH-HHhcC-CCCEEEEcCcccccccceeCCCCCHHH
Confidence            78899999999999999999876554   589999999998 8899 89996 799966654211111111223689999


Q ss_pred             HHHHHH
Q 018045          353 LMAFVD  358 (361)
Q Consensus       353 l~~~i~  358 (361)
                      |.+||+
T Consensus        76 L~~~L~   81 (81)
T PF05768_consen   76 LRAWLE   81 (81)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            999985

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]

Probab=97.45  E-value=0.001  Score=62.25  Aligned_cols=144  Identities=16%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEc-cCCCCcHHHHHHHHHHH-HHh---CCcEEEEcCChHHHHHHHHhcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSL-DTGRLNPETYRFFDEVE-KHF---GIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~-dtg~~~pet~~~v~~~~-~~~---g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +++++..|||-||-|. .|+.+.|.++..+|. ..++.-+++.+-+..++ .++   +.++..+.-+.......+.... 
T Consensus       176 Gk~l~LlSGGIDSPVA~~l~mkRG~~v~~v~f~~~p~~~~~a~~k~~~l~~~~~~~~~~~~~~~~v~f~~v~~~i~~~~-  254 (383)
T COG0301         176 GKVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREKVVALALLRLTSYGGKVRLYVVPFTEVQEEILEKV-  254 (383)
T ss_pred             CcEEEEEeCCCChHHHHHHHHhcCCEEEEEEEcCCCCchHHHHHHHHHHHhhhhcccCCceEEEEEchHHHHHHHHhhc-
Confidence            5789999999999777 899999999887777 55577788877777777 555   3344333233333333333321 


Q ss_pred             CCCCccchhchhhccccHHHHHHHc-----cCCEEEEeeeccCCccCc--cCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSPGTR--SEIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~~~R--~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                            +..+-|-.+|+.-++.+-+     +..+++||-...|=. .-  .++..++.-          .+..-++||+-
T Consensus       255 ------~~~y~~v~~rR~M~riA~~iae~~g~~aIvtGEsLGQVA-SQTl~nL~~i~~~----------t~~pIlRPLI~  317 (383)
T COG0301         255 ------PESYRCVLLKRMMYRIAEKLAEEFGAKAIVTGESLGQVA-SQTLENLRVIDSV----------TNTPVLRPLIG  317 (383)
T ss_pred             ------CccceehHHHHHHHHHHHHHHHHhCCeEEEecCcchhhh-HhHHHHHHHHHhc----------cCCceeccccC
Confidence                  2334566666666665543     567899887666631 11  122222211          13557999999


Q ss_pred             CcHHHHHHHHHhCCC
Q 018045          157 VKGNDIWNFLRTMDV  171 (361)
Q Consensus       157 W~~~dv~~yi~~~~l  171 (361)
                      |..+||-+..++-|-
T Consensus       318 ~DK~eIi~~Ar~IgT  332 (383)
T COG0301         318 LDKEEIIEIARRIGT  332 (383)
T ss_pred             CCHHHHHHHHHHhCC
Confidence            999999999998774

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=97.45  E-value=0.00083  Score=50.90  Aligned_cols=80  Identities=9%  Similarity=0.210  Sum_probs=58.8

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch----HHHHHcCCCCC-CCe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGS-FPT  329 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~v~~-~Pt  329 (361)
                      +.++++++++ .+..++++|+=+++.|+-+......|++..+...+ .+.++.+|+-+. +    .++ .+|+|.. -|.
T Consensus         6 t~eql~~i~~-~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~-~~~~y~l~v~~~-R~vSn~IA-e~~~V~HeSPQ   81 (105)
T PF11009_consen    6 TEEQLEEILE-ESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD-EIPVYYLDVIEY-RPVSNAIA-EDFGVKHESPQ   81 (105)
T ss_dssp             SHHHHHHHHH-H---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGGGG-HHHHHHHH-HHHT----SSE
T ss_pred             CHHHHHHHHH-hcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc-cceEEEEEEEeC-chhHHHHH-HHhCCCcCCCc
Confidence            4577888876 34588999999999999999999999999999876 599999999887 5    466 7899974 699


Q ss_pred             EEEEeCCCC
Q 018045          330 ILFFPKHSS  338 (361)
Q Consensus       330 ~~~~~~g~~  338 (361)
                      ++++++|+.
T Consensus        82 ~ili~~g~~   90 (105)
T PF11009_consen   82 VILIKNGKV   90 (105)
T ss_dssp             EEEEETTEE
T ss_pred             EEEEECCEE
Confidence            999999984

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.44  E-value=0.0004  Score=50.43  Aligned_cols=57  Identities=18%  Similarity=0.316  Sum_probs=41.9

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----hHHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|+++|||+|+.+.+.++++..     .+.++.++.+.+.    ..+. +..++.++|++  |-+|+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~-~~~g~~~~P~v--~~~g~   62 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQ-ELTGQRTVPNV--FIGGK   62 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHH-HHhCCCCCCeE--EECCE
Confidence            588999999999999999998754     2566777766541    1344 55688899996  44554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR00289 conserved hypothetical protein TIGR00289

Probab=97.36  E-value=0.00075  Score=58.81  Aligned_cols=120  Identities=18%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEE-ccCC-----CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFS-LDTG-----RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~-~dtg-----~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      ++++++||||||++. +.+.+. .++..++ .-..     ...-...+.++..++.+|++++.+......          
T Consensus         2 kv~vl~SGGKDS~lAl~~~~~~-~~V~~L~~~~~~~~~s~~~h~~~~~~~~~qA~algiPl~~~~~~~~~----------   70 (222)
T TIGR00289         2 KVAVLYSGGKDSILALYKALEE-HEVISLVGVFSENEESYMFHSPNLHLTDLVAEAVGIPLIKLYTSGEE----------   70 (222)
T ss_pred             eEEEEecCcHHHHHHHHHHHHc-CeeEEEEEEcCCCCCccccccCCHHHHHHHHHHcCCCeEEEEcCCch----------
Confidence            578999999999866 656555 4443332 2111     111224477889999999998765322110          


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                                   ...++.+.+.++  +.+.+++|-=..+-  +|......-..          -++..+.||..-..++
T Consensus        71 -------------e~~~~~l~~~l~~~gv~~vv~GdI~s~~--qr~~~e~vc~~----------~gl~~~~PLW~~d~~~  125 (222)
T TIGR00289        71 -------------EKEVEDLAGQLGELDVEALCIGAIESNY--QKSRIDKVCRE----------LGLKSIAPLWHADPEK  125 (222)
T ss_pred             -------------hHHHHHHHHHHHHcCCCEEEECccccHH--HHHHHHHHHHH----------cCCEEeccccCCCHHH
Confidence                         011122222222  56778888766553  33332211111          1566899999888877


Q ss_pred             HHHHH
Q 018045          162 IWNFL  166 (361)
Q Consensus       162 v~~yi  166 (361)
                      +-+++
T Consensus       126 l~e~i  130 (222)
T TIGR00289       126 LMYEV  130 (222)
T ss_pred             HHHHH
Confidence            65544

Homologous proteins related to MJ0570 of Methanococcus jannaschii include both the apparent orthologs found by this model above the trusted cutoff, the much longer protein YLR143W from Saccharomyces cerevisiae, and second homologous proteins from Archaeoglobus fulgidus and Pyrococcus horikoshii that appear to represent a second orthologous group.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.34  E-value=0.0015  Score=64.99  Aligned_cols=95  Identities=12%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEE
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~  331 (361)
                      ..|+++..+.+.+ + .+..-+-.|+++.||+|......+++++...+  +|..-.+|.... ++++ ++|++.++|+++
T Consensus       102 ~~l~~~~~~~~~~-~-~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~~~~-~~~~-~~~~v~~VP~~~  175 (515)
T TIGR03140       102 PKLDEGIIDRIRR-L-NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDGALF-QDEV-EALGIQGVPAVF  175 (515)
T ss_pred             CCCCHHHHHHHHh-c-CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEchhC-HHHH-HhcCCcccCEEE
Confidence            4466565555443 1 23445889999999999999999999998876  499999999999 9999 999999999997


Q ss_pred             EEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          332 FFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      +  +|+   ..+.| ..+.+++.+.+.
T Consensus       176 i--~~~---~~~~g-~~~~~~~~~~l~  196 (515)
T TIGR03140       176 L--NGE---EFHNG-RMDLAELLEKLE  196 (515)
T ss_pred             E--CCc---EEEec-CCCHHHHHHHHh
Confidence            6  454   33445 567777766654

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK00768 nadE NAD synthetase; Reviewed

Probab=97.28  E-value=0.0017  Score=58.16  Aligned_cols=148  Identities=10%  Similarity=0.079  Sum_probs=76.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc----C-----CCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEc--CChHHHHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT----G-----RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMF--PDAVEVQA   76 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~----~-----~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~--p~~~~~~~   76 (361)
                      ..++|+.|||-||.++ .|+.+.    +     +.+.++.+=.-...+++.+.++.+++.+|+ ++.++.  |....+..
T Consensus        39 ~g~VlGlSGGIDSav~a~L~~~A~~~~~~~~~~~~~~~~~l~mP~~~~~~~~da~~la~~lgi~~~~~i~I~~~~~~~~~  118 (268)
T PRK00768         39 KSLVLGISGGQDSTLAGRLAQLAVEELRAETGDDDYQFIAVRLPYGVQADEDDAQDALAFIQPDRVLTVNIKPAVDASVA  118 (268)
T ss_pred             CeEEEECCCCHHHHHHHHHHHHHHHHhcccccCcceeEEEEECCCCCcCCHHHHHHHHHhcCCCeeEEEECHHHHHHHHH
Confidence            6899999999999877 555542    2     122233222222346678889999999999 666553  22222222


Q ss_pred             HHHhcCCCCCCccchhchhhccccHHHHHHHccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           77 LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        77 ~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      .+...+... ..-....-...+++.-+..+.......+.|. +++|..        ...-.+|+      .+..-++||.
T Consensus       119 ~l~~~~~~~-~~~a~~NiqARlRm~~Ly~~An~~~~lvlgT~N~sE~~--------~Gy~TkyG------D~~~d~~pi~  183 (268)
T PRK00768        119 ALEAAGIEL-SDFVKGNIKARERMIAQYAIAGATGGLVVGTDHAAEAV--------TGFFTKFG------DGGADILPLF  183 (268)
T ss_pred             HHhhcCCCc-hhhHHHHHHHHHHHHHHHHHHccCCCEEEcCCcccHHH--------hCceeccC------Cccccchhhc
Confidence            221111100 0000011111122222222222334444444 233321        11111221      1234699999


Q ss_pred             cCcHHHHHHHHHhCCCC
Q 018045          156 NVKGNDIWNFLRTMDVP  172 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp  172 (361)
                      +++..+|++..+..++|
T Consensus       184 ~L~KteV~~La~~l~vP  200 (268)
T PRK00768        184 GLNKRQGRALLAALGAP  200 (268)
T ss_pred             CCcHHHHHHHHHHhCCC
Confidence            99999999999999976

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.27  E-value=0.0011  Score=57.11  Aligned_cols=77  Identities=22%  Similarity=0.382  Sum_probs=54.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEE---------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF---------------------------------------  308 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~v---------------------------------------  308 (361)
                      ..+..++.|+.+.|++|+++.+.+.+.    .+ ++.+..+                                       
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~  150 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP  150 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence            467899999999999999999998761    11 2222221                                       


Q ss_pred             ------EcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          309 ------RADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       309 ------d~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                            +++++ ..++ ++++|+++|+++ |.+|..    ..| ..+.++|.++|
T Consensus       151 ~~~~~~~i~~~-~~l~-~~~gi~gtPtii-~~~G~~----~~G-~~~~~~l~~~L  197 (197)
T cd03020         151 AASCDNPVAAN-LALG-RQLGVNGTPTIV-LADGRV----VPG-APPAAQLEALL  197 (197)
T ss_pred             ccccCchHHHH-HHHH-HHcCCCcccEEE-ECCCeE----ecC-CCCHHHHHhhC
Confidence                  12222 5677 789999999997 777762    344 67788887764

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)

Probab=97.26  E-value=0.0011  Score=48.78  Aligned_cols=53  Identities=17%  Similarity=0.231  Sum_probs=43.8

Q ss_pred             EEEEecchHHHHHH-HHHHHc---CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045           12 IAIAFSGAEDVALI-EYAHLT---GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD   70 (361)
Q Consensus        12 i~vs~SGGKDS~~l-~l~~~~---~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~   70 (361)
                      |++++|||+||.++ +++.+.   +..+.++++|      ..++.+.+.++++|.+..+.-..
T Consensus         1 ilv~~sgg~dS~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~Iv~G~~   57 (86)
T cd01984           1 ILVALSGGLDSSVLLHLAKRLKSGGPEVVALVVV------AFVRILKRLAAEEGADVIILGHN   57 (86)
T ss_pred             CEEEeeCCHHHHHHHHHHHHHHhcCCCEEEEEeH------HHHHHHHHHHHHcCCCEEEEcCC
Confidence            57899999999866 777776   7778888888      88889999999999998776443

The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=97.25  E-value=0.00064  Score=51.80  Aligned_cols=89  Identities=8%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCC--ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      ......++.++++.++.   .....+++|..+.  ++.+....=++-++.+.+.+ .+..+.|.-+.+ ..+. .+|++.
T Consensus         8 ~~g~~~vd~~~ld~~l~---~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~-~~~~avv~~~~e-~~L~-~r~gv~   81 (107)
T PF07449_consen    8 RHGWPRVDADTLDAFLA---APGDAVLFFAGDPARFPETADVAVILPELVKAFPG-RFRGAVVARAAE-RALA-ARFGVR   81 (107)
T ss_dssp             T-TEEEE-CCCHHHHHH---CCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT-SEEEEEEEHHHH-HHHH-HHHT-T
T ss_pred             hcCCeeechhhHHHHHh---CCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC-ccceEEECchhH-HHHH-HHhCCc
Confidence            34577889999999987   5666665555432  45555555578888888887 677777775555 8999 999999


Q ss_pred             CCCeEEEEeCCCCCeeecC
Q 018045          326 SFPTILFFPKHSSKPIKYP  344 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~  344 (361)
                      .+|+++++++|+  .....
T Consensus        82 ~~PaLvf~R~g~--~lG~i   98 (107)
T PF07449_consen   82 RWPALVFFRDGR--YLGAI   98 (107)
T ss_dssp             SSSEEEEEETTE--EEEEE
T ss_pred             cCCeEEEEECCE--EEEEe
Confidence            999999999998  44433

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=97.23  E-value=0.0037  Score=45.41  Aligned_cols=70  Identities=13%  Similarity=0.207  Sum_probs=50.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH--HcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKHSSKPIKYPSERRDV  350 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~  350 (361)
                      +..|..+||++|...+..|++       .++.|-.+|++.+ ++...  +..+...+|++++  ++.    ...|  .+.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~-------~gI~~~~idi~~~-~~~~~~~~~~g~~~vPvv~i--~~~----~~~G--f~~   66 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES-------RGFDFEMINVDRV-PEAAETLRAQGFRQLPVVIA--GDL----SWSG--FRP   66 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------CCCceEEEECCCC-HHHHHHHHHcCCCCcCEEEE--CCE----EEec--CCH
Confidence            678899999999999988854       2589999999887 54320  2346789999965  332    2234  678


Q ss_pred             HHHHHHHH
Q 018045          351 DSLMAFVD  358 (361)
Q Consensus       351 ~~l~~~i~  358 (361)
                      +.|.+.+.
T Consensus        67 ~~l~~~~~   74 (81)
T PRK10329         67 DMINRLHP   74 (81)
T ss_pred             HHHHHHHH
Confidence            88887764

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=97.20  E-value=0.00098  Score=47.24  Aligned_cols=67  Identities=18%  Similarity=0.251  Sum_probs=46.8

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHc---CCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQK---LQLGSFPTILFFPKHSSKPIKYPSERRD  349 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~---~~v~~~Pt~~~~~~g~~~~~~~~~~~~~  349 (361)
                      +..|..++|+.|+..+..|++.       ++.|-.+|++++ ++.. ..   .+..++|++++  +|..   ...|  .+
T Consensus         1 v~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~~di~~~-~~~~-~~~~~~g~~~vP~v~~--~g~~---~~~G--~~   64 (72)
T TIGR02194         1 ITVYSKNNCVQCKMTKKALEEH-------GIAFEEINIDEQ-PEAI-DYVKAQGFRQVPVIVA--DGDL---SWSG--FR   64 (72)
T ss_pred             CEEEeCCCCHHHHHHHHHHHHC-------CCceEEEECCCC-HHHH-HHHHHcCCcccCEEEE--CCCc---EEec--cC
Confidence            3578899999999999888752       588888999887 5444 33   47789999755  3431   2222  66


Q ss_pred             HHHHHH
Q 018045          350 VDSLMA  355 (361)
Q Consensus       350 ~~~l~~  355 (361)
                      ++.|.+
T Consensus        65 ~~~~~~   70 (72)
T TIGR02194        65 PDKLKA   70 (72)
T ss_pred             HHHHHh
Confidence            666654

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=97.20  E-value=0.0014  Score=45.69  Aligned_cols=55  Identities=16%  Similarity=0.294  Sum_probs=40.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|+++||++|+.+...|.+..       +.+..+|++.+ .+...   +..+..++|+++  .+|+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~~~-~~~~~~l~~~~~~~~~P~~~--~~~~   59 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDILED-GELREELKELSGWPTVPQIF--INGE   59 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECCCC-HHHHHHHHHHhCCCCcCEEE--ECCE
Confidence            67899999999999999988663       67778888877 43320   345667888774  3554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=97.17  E-value=0.0023  Score=55.60  Aligned_cols=108  Identities=10%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---------------
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---------------  312 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---------------  312 (361)
                      ++.|+.+++++...+..-.+.++|++|+|.+-.||+-+.-.+.+++++++|.+ .+.|+.|-+.+               
T Consensus        81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d-~adFl~VYI~EAHpsDgW~~~~~~~~  159 (237)
T PF00837_consen   81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD-VADFLIVYIEEAHPSDGWAFGNNPYE  159 (237)
T ss_pred             CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh-hhheehhhHhhhCcCCCccCCCCcee
Confidence            34688888877555555455899999999999999999999999999999987 44555443321               


Q ss_pred             ---Cc---------hHHH-----------------HHcCCCCCCC-eEEEEeCCCCCeeecCCC----CCCHHHHHHHHH
Q 018045          313 ---DQ---------KEYA-----------------KQKLQLGSFP-TILFFPKHSSKPIKYPSE----RRDVDSLMAFVD  358 (361)
Q Consensus       313 ---~~---------~~l~-----------------~~~~~v~~~P-t~~~~~~g~~~~~~~~~~----~~~~~~l~~~i~  358 (361)
                         ..         +.+.                 +..|+  .+| .++++++|+   +.|.||    ..+.+++.+||+
T Consensus       160 i~qh~sledR~~aA~~l~~~~~~~pi~vD~mdN~~~~~Yg--A~PeRlyIi~~gk---v~Y~Gg~GP~~y~~~e~r~~L~  234 (237)
T PF00837_consen  160 IPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMDNNFNKAYG--ALPERLYIIQDGK---VVYKGGPGPFGYSPEELREWLE  234 (237)
T ss_pred             ecCCCCHHHHHHHHHHHHhhCCCCCEEEEccCCHHHHHhC--CCcceEEEEECCE---EEEeCCCCCCcCCHHHHHHHHH
Confidence               10         0111                 01222  467 466677776   666664    368999999999


Q ss_pred             HhC
Q 018045          359 ALR  361 (361)
Q Consensus       359 ~~~  361 (361)
                      +++
T Consensus       235 ~~~  237 (237)
T PF00837_consen  235 KYK  237 (237)
T ss_pred             hcC
Confidence            864

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=97.14  E-value=0.0017  Score=46.91  Aligned_cols=71  Identities=18%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE  346 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~  346 (361)
                      ++.-++.|+.+||++|+..+..|++.       ++.+-.+|++.+.  ..+. ...+..++|.+++  +|+  .   .||
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-------gi~y~~idi~~~~~~~~~~-~~~g~~~vP~i~i--~g~--~---igG   70 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKEK-------GYDFEEIPLGNDARGRSLR-AVTGATTVPQVFI--GGK--L---IGG   70 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHHc-------CCCcEEEECCCChHHHHHH-HHHCCCCcCeEEE--CCE--E---EcC
Confidence            44558899999999999999888642       4777778887651  2344 4568899999854  554  1   232


Q ss_pred             CCCHHHHHHHH
Q 018045          347 RRDVDSLMAFV  357 (361)
Q Consensus       347 ~~~~~~l~~~i  357 (361)
                         .++|.+||
T Consensus        71 ---~~~l~~~l   78 (79)
T TIGR02190        71 ---SDELEAYL   78 (79)
T ss_pred             ---HHHHHHHh
Confidence               36676665

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO)

Probab=97.13  E-value=0.0023  Score=57.04  Aligned_cols=109  Identities=21%  Similarity=0.281  Sum_probs=63.6

Q ss_pred             CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHhcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRSKGL   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~~~~~~~   83 (361)
                      .++.+.+|||-||.++ .++.+ .+.++..+.++.+...+.=..+++++++.+|++++.+......+    ...+...+.
T Consensus        18 ~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (255)
T PF00733_consen   18 KPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIELDPEDLLDNLEDIIWRLDG   97 (255)
T ss_dssp             SEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE-HHHHHHHHHHHHHHHT-
T ss_pred             CCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeeechhhHHHhHHHHHHHHhC
Confidence            6899999999999877 77777 67788889988887766566889999999999987766554333    222222222


Q ss_pred             CCCCccchhchhhccccHHHHHHH--ccCCEEEEeeeccCCc
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP  123 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es~  123 (361)
                      |.    ....+....-.. +.+..  .+.+++++|.-.||-.
T Consensus        98 p~----~~~~~~~~~~~~-~~~~a~~~~~~~~ltG~GgDelf  134 (255)
T PF00733_consen   98 PS----PLDDPNSLPLYL-LARLARENGIRVLLTGQGGDELF  134 (255)
T ss_dssp             ------HHHHHHHHHHHH-HHHHHCHTTBSEEE--TTHHHHH
T ss_pred             Cc----ccccccccHHHH-HHHhhcccceeEEEecccccccc
Confidence            11    100111111111 22222  3678999999999864

Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)

Probab=97.10  E-value=0.0022  Score=62.89  Aligned_cols=106  Identities=16%  Similarity=0.182  Sum_probs=66.2

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCC--CceEEEccCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHh
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGR--PFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRS   80 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~--~i~v~~~dtg--~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~~~~   80 (361)
                      .++.+.+|||.||.++ .++.+...  ++..+.++.+  ..+.| ..+++++++++|++.+.+......+    ...+..
T Consensus       254 ~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~~~~~~~E-~~~A~~vA~~lg~~~~~i~~~~~~~~~~~~~~v~~  332 (467)
T TIGR01536       254 VPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFEGSPDFDE-SPYARKVADHLGTEHHEVLFSVEEGLDALPEVIYH  332 (467)
T ss_pred             CceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecCCCCCCCh-HHHHHHHHHHhCCcCeEEECCHHHHHHHHHHHHHh
Confidence            4789999999999877 67766543  5777777665  34555 4689999999999988776554322    222222


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP  123 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~  123 (361)
                      .+.|.      .. +...-...+.+..+  +.+++++|.-+||-.
T Consensus       333 ~~~p~------~~-~~~~~~~~l~~~a~~~G~~vlltG~GaDElf  370 (467)
T TIGR01536       333 LEDPT------TI-RASIPLYLLSKLAREDGVKVVLSGEGADELF  370 (467)
T ss_pred             hCCCC------CC-chHHHHHHHHHHHHhcCCEEEEecCcchhcc
Confidence            22111      01 11112223333333  468999999999974

This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=96.99  E-value=0.002  Score=48.79  Aligned_cols=55  Identities=18%  Similarity=0.339  Sum_probs=37.6

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--h----HHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--K----EYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~----~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|..+|||+|++++..|.+.       ++.+..+|++...  .    .+. +..+..++|.+  |-+|+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~-------~i~~~~vdid~~~~~~~~~~~l~-~~tg~~tvP~V--fi~g~   70 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL-------GVNPAVHEIDKEPAGKDIENALS-RLGCSPAVPAV--FVGGK   70 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCCEEEEcCCCccHHHHHHHHH-HhcCCCCcCeE--EECCE
Confidence            7789999999999999877654       3555566666541  1    223 33467899997  44554

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=96.98  E-value=0.003  Score=44.79  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=39.2

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCCCeEE
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTIL  331 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~Pt~~  331 (361)
                      ++.|+.++|+.|+..+..|++.       ++.+..+|++.+ .+    +. +..+-..+|+++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~~-------gi~~~~~di~~~-~~~~~el~-~~~g~~~vP~v~   56 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLREK-------GLPYVEINIDIF-PERKAELE-ERTGSSVVPQIF   56 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHHC-------CCceEEEECCCC-HHHHHHHH-HHhCCCCcCEEE
Confidence            6789999999999999888862       588888899887 43    44 455667889983

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.97  E-value=0.0018  Score=46.66  Aligned_cols=55  Identities=22%  Similarity=0.501  Sum_probs=39.2

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|+.++|+.|...+..|++.       ++.+-.+|++.+ +....   +..+..++|++++  +|+
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~di~~~-~~~~~~~~~~~g~~~vP~i~i--~g~   58 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSSK-------GVTFTEIRVDGD-PALRDEMMQRSGRRTVPQIFI--GDV   58 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHHc-------CCCcEEEEecCC-HHHHHHHHHHhCCCCcCEEEE--CCE
Confidence            4678899999999999998753       467777788776 43330   3346788999733  454

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>COG0171 NadE NAD synthase [Coenzyme metabolism]

Probab=96.95  E-value=0.0077  Score=53.94  Aligned_cols=151  Identities=17%  Similarity=0.223  Sum_probs=82.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CC-----CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE--cCChHHH-HHHHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GR-----PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM--FPDAVEV-QALVR   79 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~-----~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~--~p~~~~~-~~~~~   79 (361)
                      ..++++.|||-||++. .|+.+. ++     ++..+.+..+.--+.+.+-+..+++.+|++...+  +|....+ .....
T Consensus        26 k~~VlGiSGGiDSa~~~~La~~A~~~~~~~~~~~av~mP~~~~~~~~~~da~~~~~~lg~~~~~i~I~~~v~~~~~~~~~  105 (268)
T COG0171          26 KGVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEEDAQDLAEALGIDYKEINIKPAVDAFLKKLLK  105 (268)
T ss_pred             CCeEEEcccChHHHHHHHHHHHHhccccchhheeeEECCCCCccccCHHHHHHHHHHhCCceEEEecHHHHHHHHHhhhh
Confidence            6899999999999877 676663 32     2666777766435778888999999999985543  2222221 11111


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG  159 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~  159 (361)
                      .........-....-....++..+-.+.......+.|.      ++++... ..+-.+|+      .+-.-++||.+...
T Consensus       106 ~~~~~~~~~~~~~NikaR~Rm~~lY~~An~~~~lVlGT------gn~sE~~-~Gy~TkyG------Dg~~d~~Pi~~L~K  172 (268)
T COG0171         106 LFLGIYLEDLALGNIKARLRMVILYAIANKLGGLVLGT------GNKSELA-LGYFTKYG------DGAVDINPIADLYK  172 (268)
T ss_pred             hhcccchhhHHHhhhhHHHHHHHHHHHHhhcCCEEEcC------CcHHHHh-cCceeccc------CcccChhhhcCCcH
Confidence            11000000000011112222233333333445555554      1332221 12222232      13346999999999


Q ss_pred             HHHHHHHHhCCCCC
Q 018045          160 NDIWNFLRTMDVPI  173 (361)
Q Consensus       160 ~dv~~yi~~~~lp~  173 (361)
                      .+|++.++..++|-
T Consensus       173 tqV~~La~~l~ipe  186 (268)
T COG0171         173 TQVYALARHLGIPE  186 (268)
T ss_pred             HHHHHHHHHcCCCH
Confidence            99999999777765

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.95  E-value=0.003  Score=44.92  Aligned_cols=55  Identities=18%  Similarity=0.353  Sum_probs=39.6

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCC-CCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLG-SFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~-~~Pt~~~~~~g~  337 (361)
                      ++.|..++|+.|...+..|++.       ++.+-.+|++.+ ++...   +..+.. ++|+++  -+|+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~~-------~i~~~~i~i~~~-~~~~~~~~~~~~~~~~vP~v~--i~g~   60 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDKK-------GVDYEEIDVDGD-PALREEMINRSGGRRTVPQIF--IGDV   60 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHHHHhCCCCccCEEE--ECCE
Confidence            5789999999999999888762       578888888876 44330   234655 899774  3454

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PHA03050 glutaredoxin; Provisional

Probab=96.93  E-value=0.0027  Score=48.85  Aligned_cols=55  Identities=15%  Similarity=0.198  Sum_probs=37.9

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--c----hHHHHHcCCCCCCCeEEE
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--Q----KEYAKQKLQLGSFPTILF  332 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--~----~~l~~~~~~v~~~Pt~~~  332 (361)
                      ++.|..+|||+|+..+..|++..-..+    .|-.+|+++.  .    ..+. +..+..++|++++
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~-~~tG~~tVP~IfI   75 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFE-QITGGRTVPRIFF   75 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHH-HHcCCCCcCEEEE
Confidence            889999999999999988877643221    3555566542  1    2344 5567789999843

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=96.92  E-value=0.0059  Score=54.60  Aligned_cols=84  Identities=15%  Similarity=0.257  Sum_probs=58.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc----------------C--------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA----------------D--------------------  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~----------------~--------------------  311 (361)
                      +.+.+++.|.-+.|++|+++.+.+.++.+.  + +|.+..+-.                .                    
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g-~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~  192 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS--G-KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLK  192 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc--C-ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCC
Confidence            466789999999999999999998776543  1 233332211                0                    


Q ss_pred             C----C---------chHHHHHcCCCCCCCeEEEEeC-CCCCeeecCCCCCCHHHHHHHHH
Q 018045          312 G----D---------QKEYAKQKLQLGSFPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       312 ~----~---------~~~l~~~~~~v~~~Pt~~~~~~-g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      .    .         +..+. ++++|+++|++++-+. |.  +....| ..++++|.+.|.
T Consensus       193 ~~~~~~~~~~~~i~~n~~l~-~~lGv~GTPaiv~~d~~G~--~~~v~G-~~~~~~L~~~l~  249 (251)
T PRK11657        193 PPASIPAAVRKQLADNQKLM-DDLGANATPAIYYMDKDGT--LQQVVG-LPDPAQLAEIMG  249 (251)
T ss_pred             ccccCCHHHHHHHHHHHHHH-HHcCCCCCCEEEEECCCCC--EEEecC-CCCHHHHHHHhC
Confidence            0    0         03366 6899999999999863 43  445555 678999998875

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]

Probab=96.87  E-value=0.0038  Score=53.56  Aligned_cols=127  Identities=14%  Similarity=0.206  Sum_probs=82.8

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceE-EE--ccCC----CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRV-FS--LDTG----RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v-~~--~dtg----~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~   82 (361)
                      ++++.+||||||+.. |++.+.+.++.. +.  -..+    +|+| -.++++.+++-.|+++........          
T Consensus         2 k~~aL~SGGKDS~~Al~~a~~~G~eV~~Ll~~~p~~~dS~m~H~~-n~~~~~~~Ae~~gi~l~~~~~~g~----------   70 (223)
T COG2102           2 KVIALYSGGKDSFYALYLALEEGHEVVYLLTVKPENGDSYMFHTP-NLELAELQAEAMGIPLVTFDTSGE----------   70 (223)
T ss_pred             cEEEEEecCcHHHHHHHHHHHcCCeeEEEEEEecCCCCeeeeecc-chHHHHHHHHhcCCceEEEecCcc----------
Confidence            578899999999866 899988877643 22  2222    1223 457788889999999877654431          


Q ss_pred             CCCCCccchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045           83 LFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN  160 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~  160 (361)
                                   ....++.+..++++.  +.+++|-=+.+-  ++..+..+...          -+...+.||..-..+
T Consensus        71 -------------~e~eve~L~~~l~~l~~d~iv~GaI~s~y--qk~rve~lc~~----------lGl~~~~PLWg~d~~  125 (223)
T COG2102          71 -------------EEREVEELKEALRRLKVDGIVAGAIASEY--QKERVERLCEE----------LGLKVYAPLWGRDPE  125 (223)
T ss_pred             -------------chhhHHHHHHHHHhCcccEEEEchhhhHH--HHHHHHHHHHH----------hCCEEeecccCCCHH
Confidence                         222334555566644  478888766664  44433322211          256789999999999


Q ss_pred             HHHHHHHhCCCCC
Q 018045          161 DIWNFLRTMDVPI  173 (361)
Q Consensus       161 dv~~yi~~~~lp~  173 (361)
                      ++-.-+-..|+..
T Consensus       126 ell~e~~~~Gf~~  138 (223)
T COG2102         126 ELLEEMVEAGFEA  138 (223)
T ss_pred             HHHHHHHHcCCeE
Confidence            9988888887543

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.84  E-value=0.011  Score=49.82  Aligned_cols=68  Identities=26%  Similarity=0.453  Sum_probs=57.0

Q ss_pred             hhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          286 AMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       286 ~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .+...|.++|+.+.+ .+.|+.+.   + .+++ +++++.. |++++|+++......|.|...+.++|.+||++-
T Consensus         7 ~~~~~f~~~A~~~~~-~~~F~~~~---~-~~~~-~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~   74 (184)
T PF13848_consen    7 ELFEIFEEAAEKLKG-DYQFGVTF---N-EELA-KKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKN   74 (184)
T ss_dssp             HHHHHHHHHHHHHTT-TSEEEEEE-----HHHH-HHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcC-CcEEEEEc---H-HHHH-HHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHh
Confidence            356789999999997 69999887   4 7889 8999998 999999986666899998437999999999863

...

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=96.74  E-value=0.0061  Score=43.02  Aligned_cols=67  Identities=18%  Similarity=0.338  Sum_probs=47.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV  350 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~  350 (361)
                      ++.|..+||+.|...+..|++.       ++.+..+|++.+.  ..+. ...+...+|.+  |-+|+  .+   ||   .
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~~-------~i~~~~~~v~~~~~~~~~~-~~~g~~~vP~i--fi~g~--~i---gg---~   64 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQEN-------GISYEEIPLGKDITGRSLR-AVTGAMTVPQV--FIDGE--LI---GG---S   64 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCcEEEECCCChhHHHHH-HHhCCCCcCeE--EECCE--EE---eC---H
Confidence            6889999999999998888742       4778888887761  1233 34578899997  34455  22   32   5


Q ss_pred             HHHHHHH
Q 018045          351 DSLMAFV  357 (361)
Q Consensus       351 ~~l~~~i  357 (361)
                      ++|.+||
T Consensus        65 ~~l~~~l   71 (72)
T cd03029          65 DDLEKYF   71 (72)
T ss_pred             HHHHHHh
Confidence            7777775

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]

Probab=96.73  E-value=0.0069  Score=56.82  Aligned_cols=71  Identities=15%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CHHHHhHhC-CcEEEEecchHHHHHH-HHHHH-cCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh
Q 018045            1 MDRALEKFG-NDIAIAFSGAEDVALI-EYAHL-TGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA   71 (361)
Q Consensus         1 i~~~~~~~~-~~i~vs~SGGKDS~~l-~l~~~-~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~   71 (361)
                      |+|+.+..| .+++++.|||-||+|+ .|+.+ .++ .+.++++|.|..-..--+-+++....+|++++++....
T Consensus       221 I~~i~k~vG~~~Vl~~vSGgvdStV~a~Ll~~alg~~R~~ai~vdNG~mrk~Ea~~V~~tl~~lgi~i~v~~as~  295 (552)
T KOG1622|consen  221 INEIRKWVGDYKVLVAVSGGVDSTVCAALLRRALGPDRVHAIHVDNGFMRKKEAEQVEKTLVYLGIPITVVDASE  295 (552)
T ss_pred             HHHHHHHhcccceEEEecCCchHHHHHHHHHHhhCCCceEEEEecccchhhhHHHHHHHHHHHcCCceEEeechH
Confidence            356666666 6899999999999988 55555 564 57899999997655555666666677999999886543

>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]

Probab=96.70  E-value=0.0041  Score=52.65  Aligned_cols=137  Identities=18%  Similarity=0.257  Sum_probs=80.5

Q ss_pred             CcEEEEecchHHHHHHH-HHHHcCCCceEEEccCC--CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALIE-YAHLTGRPFRVFSLDTG--RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l~-l~~~~~~~i~v~~~dtg--~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      .+++||+|||-||++.. +++..+     +.+|.|  ...+++..-+++++..+|.....+..+...    +.+.-+++-
T Consensus        61 ~kiaVA~SGG~DSsas~iilR~~g-----~~v~p~t~~Lp~~ir~n~~~l~~~lg~~p~yveedl~~----i~kGalnGR  131 (255)
T COG1365          61 PKIAVAYSGGVDSSASAIILRWAG-----FTVDPGTAILPDHIRRNKEELETLLGEVPEYVEEDLED----IEKGALNGR  131 (255)
T ss_pred             ceEEEEecCCcchHHHHHHHHhhc-----eeeccccccCCHHHhHHHHHHHHHHccCHHHHHHHHHH----HHhhhccCC
Confidence            37999999999998884 555566     445555  455699999999999999766554332222    222212221


Q ss_pred             CccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEe-e-CccCcHHHH
Q 018045           87 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN-P-VANVKGNDI  162 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-P-i~~W~~~dv  162 (361)
                      .  .++--|.-+=+.......+  +.+++++|--..-.      ...+..+          .+++++| | .+--|..|+
T Consensus       132 f--hpCGRCh~~I~~~V~~k~re~di~~vafGDlLs~G------~~svy~e----------D~i~rlnlPAflAltK~El  193 (255)
T COG1365         132 F--HPCGRCHSMIENAVMDKARELDIDVVAFGDLLSTG------YGSVYRE----------DGIFRLNLPAFLALTKDEL  193 (255)
T ss_pred             C--CCcchHHHHHHHHHHHHHHhcCCeEEEEccccccc------ccceecc----------CCEEEEccHHHHhhCcHHH
Confidence            1  1222244443444444444  44688887544332      1111111          2455554 2 346799999


Q ss_pred             HHHHHhCCCCC
Q 018045          163 WNFLRTMDVPI  173 (361)
Q Consensus       163 ~~yi~~~~lp~  173 (361)
                      ...+..+++..
T Consensus       194 r~il~~~~~e~  204 (255)
T COG1365         194 RSILKWNGYEL  204 (255)
T ss_pred             HHHHHhcCccc
Confidence            99999999866

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.66  E-value=0.0066  Score=44.97  Aligned_cols=60  Identities=25%  Similarity=0.388  Sum_probs=44.7

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc--CCC-----------------------------chHHHHHc
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA--DGD-----------------------------QKEYAKQK  321 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~--~~~-----------------------------~~~l~~~~  321 (361)
                      ++.|+.+.|++|..+.+.+.++.....+ ++.+..+.+  ...                             ...+. .+
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~   78 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA-RA   78 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HH
Confidence            4689999999999999999999866655 566655543  211                             02345 67


Q ss_pred             CCCCCCCeEEEEe
Q 018045          322 LQLGSFPTILFFP  334 (361)
Q Consensus       322 ~~v~~~Pt~~~~~  334 (361)
                      +++.++||+++..
T Consensus        79 ~g~~g~Pt~v~~~   91 (98)
T cd02972          79 LGVTGTPTFVVNG   91 (98)
T ss_pred             cCCCCCCEEEECC
Confidence            8999999999875

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=96.57  E-value=0.016  Score=58.22  Aligned_cols=87  Identities=13%  Similarity=0.144  Sum_probs=66.9

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe-CCCCCeeecCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSER  347 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~~~  347 (361)
                      +...++.|..+.|..|..+...++++++. .+ .+.+...|...+ .+++ ++|+|...|++.+++ +|...-+.|.| -
T Consensus       366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~~-s~-~i~~~~~~~~~~-~~~~-~~~~v~~~P~~~i~~~~~~~~~i~f~g-~  440 (555)
T TIGR03143       366 NPVTLLLFLDGSNEKSAELQSFLGEFASL-SE-KLNSEAVNRGEE-PESE-TLPKITKLPTVALLDDDGNYTGLKFHG-V  440 (555)
T ss_pred             CCEEEEEEECCCchhhHHHHHHHHHHHhc-CC-cEEEEEeccccc-hhhH-hhcCCCcCCEEEEEeCCCcccceEEEe-c
Confidence            34457788888999999999999999854 44 688888898888 8889 899999999999995 55433477776 3


Q ss_pred             CCHHHHHHHHHHh
Q 018045          348 RDVDSLMAFVDAL  360 (361)
Q Consensus       348 ~~~~~l~~~i~~~  360 (361)
                      -.-.+|..||..+
T Consensus       441 P~G~Ef~s~i~~i  453 (555)
T TIGR03143       441 PSGHELNSFILAL  453 (555)
T ss_pred             CccHhHHHHHHHH
Confidence            4456677766543

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal

Probab=96.54  E-value=0.0023  Score=55.68  Aligned_cols=125  Identities=15%  Similarity=0.140  Sum_probs=58.9

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceE-EE-ccCCC---CcHH-HHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRV-FS-LDTGR---LNPE-TYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v-~~-~dtg~---~~pe-t~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +++++|||||||++. +.+.+. .++.. ++ ...+.   -|.. ..+.++..++.+|+++..+......          
T Consensus         2 k~v~l~SGGKDS~lAl~~a~~~-~~v~~L~t~~~~~~~s~~~H~~~~~~~~~qA~algipl~~~~~~g~~----------   70 (218)
T PF01902_consen    2 KVVALWSGGKDSCLALYRALRQ-HEVVCLLTMVPEEEDSYMFHGVNIELIEAQAEALGIPLIEIPTSGDE----------   70 (218)
T ss_dssp             EEEEE--SSHHHHHHHHHHHHT--EEEEEEEEEESTTT-SSS-STTGTCHHHHHHHHT--EEEEEE---C----------
T ss_pred             cEEEEEcCcHHHHHHHHHHHHh-CCccEEEEeccCCCCcccccccCHHHHHHHHHHCCCCEEEEEccCcc----------
Confidence            578999999999866 666666 55533 22 22221   1222 2667889999999998765332100          


Q ss_pred             CCCCccchhchhhccccHHHHHHHcc--CCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALKG--LRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~~--~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                                   .--.+-+..+++.  .+.++.|-=..+-  +|......-..          -|+..+.||..-+.++
T Consensus        71 -------------~~~~~~l~~~l~~~~v~~vv~GdI~~~~--~r~~~e~vc~~----------lGl~~~~PLW~~d~~~  125 (218)
T PF01902_consen   71 -------------EDYVEDLKEALKELKVEAVVFGDIDSEY--QRNWVERVCER----------LGLEAVFPLWGRDREE  125 (218)
T ss_dssp             -------------CCHHHHHHHHHCTC--SEEE--TTS-HH--HHHHHHHHHHH----------CT-EEE-TTTT--HHH
T ss_pred             -------------chhhHHHHHHHHHcCCCEEEECcCCcHH--HHHHHHHHHHH----------cCCEEEecccCCCHHH
Confidence                         0001233344443  3466666554442  33322211111          1566789999888877


Q ss_pred             HHHHHHhCCC
Q 018045          162 IWNFLRTMDV  171 (361)
Q Consensus       162 v~~yi~~~~l  171 (361)
                      +..-+.+.|+
T Consensus       126 ll~e~i~~Gf  135 (218)
T PF01902_consen  126 LLREFIESGF  135 (218)
T ss_dssp             HHHHHHHTT-
T ss_pred             HHHHHHHCCC
Confidence            7665554443

The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=96.45  E-value=0.012  Score=42.54  Aligned_cols=52  Identities=19%  Similarity=0.457  Sum_probs=39.1

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----hHHHHHcC-CCCCCCeEEE
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKL-QLGSFPTILF  332 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~-~v~~~Pt~~~  332 (361)
                      ++.|..++||+|...+..|.+       .++.|..+|++..+    .+.. ++. +..++|++++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~~-------~g~~~~~i~~~~~~~~~~~~~~-~~~~g~~tvP~I~i   59 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLDR-------KGVDYEEIDVDDDEPEEAREMV-KRGKGQRTVPQIFI   59 (80)
T ss_pred             EEEEECCCCchHHHHHHHHHH-------cCCCcEEEEecCCcHHHHHHHH-HHhCCCCCcCEEEE
Confidence            678899999999999988872       26888888887763    2344 344 6899999766

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=96.42  E-value=0.018  Score=43.37  Aligned_cols=56  Identities=16%  Similarity=0.252  Sum_probs=37.8

Q ss_pred             CCcEEEEEE----CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEE
Q 018045          269 QEPWLVVLY----APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILF  332 (361)
Q Consensus       269 ~~~vlv~F~----a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~  332 (361)
                      ...|+|+-.    +||||+|...+..|.+.       ++.|..+|++.+ .++..   +..+...+|.+++
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-------~i~~~~~di~~~-~~~~~~l~~~tg~~tvP~vfi   73 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC-------GVPFAYVNVLED-PEIRQGIKEYSNWPTIPQLYV   73 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHc-------CCCEEEEECCCC-HHHHHHHHHHhCCCCCCEEEE
Confidence            445555443    39999999999888764       467788888776 43220   3456678998743

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=96.39  E-value=0.015  Score=43.13  Aligned_cols=58  Identities=22%  Similarity=0.448  Sum_probs=39.3

Q ss_pred             CCcEEEEEEC----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCCCeEEEEeCCC
Q 018045          269 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       269 ~~~vlv~F~a----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      +.+|+|+-..    |||++|+..+..|++.       ++.|..+|++.+ .+    +. +..+-.++|.++  -+|+
T Consensus         7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~~~-~~~~~~l~-~~~g~~tvP~vf--i~g~   72 (90)
T cd03028           7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDILED-EEVRQGLK-EYSNWPTFPQLY--VNGE   72 (90)
T ss_pred             cCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcCCC-HHHHHHHH-HHhCCCCCCEEE--ECCE
Confidence            4555554332    7999999999888775       367777788766 43    33 445778899973  3554

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PRK10638 glutaredoxin 3; Provisional

Probab=96.30  E-value=0.015  Score=42.29  Aligned_cols=54  Identities=20%  Similarity=0.399  Sum_probs=39.7

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch----HHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----EYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|..++|++|+.....+++.       ++.+..+|++.+ .    ++. +..+...+|++++  +|+
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~-------gi~y~~~dv~~~-~~~~~~l~-~~~g~~~vP~i~~--~g~   61 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK-------GVSFQEIPIDGD-AAKREEMI-KRSGRTTVPQIFI--DAQ   61 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCC-HHHHHHHH-HHhCCCCcCEEEE--CCE
Confidence            6688899999999999888853       477777888776 4    334 4457788998743  454

>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=96.12  E-value=0.093  Score=40.00  Aligned_cols=90  Identities=13%  Similarity=0.262  Sum_probs=62.9

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      +.+++++++.   .++.++|-|+..--.   .+...+.++|+.+.+ ++.|+...   . .++. ..+++  .|++++|+
T Consensus         7 s~~~l~~f~~---~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~--~~~ivl~~   72 (104)
T cd03069           7 TEAEFEKFLS---DDDASVVGFFEDEDS---KLLSEFLKAADTLRE-SFRFAHTS---D-KQLL-EKYGY--GEGVVLFR   72 (104)
T ss_pred             CHHHHHHHhc---cCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh-cCEEEEEC---h-HHHH-HhcCC--CCceEEEe
Confidence            3345666665   677788877766433   467789999999976 67886533   2 4667 78888  78888883


Q ss_pred             C------CCCCeeecCCCCCCHHHHHHHHHH
Q 018045          335 K------HSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       335 ~------g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      .      -......|.| ..+.++|.+||..
T Consensus        73 p~~~~~k~de~~~~y~g-~~~~~~l~~fi~~  102 (104)
T cd03069          73 PPRLSNKFEDSSVKFDG-DLDSSKIKKFIRE  102 (104)
T ss_pred             chhhhcccCcccccccC-cCCHHHHHHHHHh
Confidence            3      1222456877 5789999999975

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.

>KOG2640 consensus Thioredoxin [Function unknown]

Probab=95.64  E-value=0.0058  Score=54.79  Aligned_cols=87  Identities=18%  Similarity=0.380  Sum_probs=69.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      +...+-+.||+.||+..+..+|.+.-....+..  +....|+-....+.+. .+|++.+.|++.+...--  +..|.| .
T Consensus        75 ~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~--i~h~~vee~~~lpsv~-s~~~~~~~ps~~~~n~t~--~~~~~~-~  148 (319)
T KOG2640|consen   75 KNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS--IQHFAVEESQALPSVF-SSYGIHSEPSNLMLNQTC--PASYRG-E  148 (319)
T ss_pred             cCCcccccchhcccCcccccCcccchhhhhccc--cccccHHHHhhcccch-hccccccCCcceeecccc--chhhcc-c
Confidence            467899999999999999999999999998874  4444443222226777 899999999999997655  677777 7


Q ss_pred             CCHHHHHHHHHHh
Q 018045          348 RDVDSLMAFVDAL  360 (361)
Q Consensus       348 ~~~~~l~~~i~~~  360 (361)
                      ++..+|++|..++
T Consensus       149 r~l~sLv~fy~~i  161 (319)
T KOG2640|consen  149 RDLASLVNFYTEI  161 (319)
T ss_pred             ccHHHHHHHHHhh
Confidence            9999999998764

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=95.56  E-value=0.03  Score=45.51  Aligned_cols=39  Identities=15%  Similarity=0.262  Sum_probs=31.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF  308 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~v  308 (361)
                      ..+..++.|+.++||+|+.+.|.+.++...+.+  +.+...
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~   42 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFK   42 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence            467889999999999999999999998877643  444433

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=0.026  Score=56.21  Aligned_cols=80  Identities=16%  Similarity=0.305  Sum_probs=61.7

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHHHHHcCC-----
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEYAKQKLQ-----  323 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~-----  323 (361)
                      .....+.|.+.-.   .+||++|....+||..|+.|..+=   .++|+.++. ++.-++||-++- +++- +.|.     
T Consensus        29 ~pW~~eAf~~A~~---edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~-~FV~IKVDREER-PDvD-~~Ym~~~q~  102 (667)
T COG1331          29 YPWGEEAFAKAKE---EDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE-NFVPVKVDREER-PDVD-SLYMNASQA  102 (667)
T ss_pred             cccCHHHHHHHHH---hCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh-CceeeeEChhhc-cCHH-HHHHHHHHH
Confidence            4567788888776   899999999999999999999863   778888887 788888888776 6655 4332     


Q ss_pred             ---CCCCCeEEEE-eCCC
Q 018045          324 ---LGSFPTILFF-PKHS  337 (361)
Q Consensus       324 ---v~~~Pt~~~~-~~g~  337 (361)
                         --+.|-.+|. ++|+
T Consensus       103 ~tG~GGWPLtVfLTPd~k  120 (667)
T COG1331         103 ITGQGGWPLTVFLTPDGK  120 (667)
T ss_pred             hccCCCCceeEEECCCCc
Confidence               4478966666 5555

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.27  Score=40.29  Aligned_cols=92  Identities=14%  Similarity=0.226  Sum_probs=66.1

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~~  326 (361)
                      .++.||++|| ..+++.|-...-.|++...+++..+..++.|..|..                    +..++ +.|+|..
T Consensus        29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~-~~ygv~~  107 (157)
T COG1225          29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVA-EAYGVWG  107 (157)
T ss_pred             cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHH-HHhCccc
Confidence            5779999999 789999999999999999999876788888876543                    15677 7888743


Q ss_pred             ------------CCeEEEEeCCCCCeeecCC--CCCCHHHHHHHHHHh
Q 018045          327 ------------FPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ------------~Pt~~~~~~g~~~~~~~~~--~~~~~~~l~~~i~~~  360 (361)
                                  .++.++++..+.+...+..  -.-.++++.+.|+++
T Consensus       108 ~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l  155 (157)
T COG1225         108 EKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL  155 (157)
T ss_pred             ccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence                        4677777654433333322  123577888888765

>PRK10824 glutaredoxin-4; Provisional

Probab=95.21  E-value=0.075  Score=41.27  Aligned_cols=56  Identities=13%  Similarity=0.252  Sum_probs=35.2

Q ss_pred             CCcEEEEEEC----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEE
Q 018045          269 QEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILF  332 (361)
Q Consensus       269 ~~~vlv~F~a----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~  332 (361)
                      ..+|+|+--.    ||||+|+.....|.++.       +.+..+|++.+ .++..   +.-+-..+|.+++
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~-------i~~~~idi~~d-~~~~~~l~~~sg~~TVPQIFI   76 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSACG-------ERFAYVDILQN-PDIRAELPKYANWPTFPQLWV   76 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHHcC-------CCceEEEecCC-HHHHHHHHHHhCCCCCCeEEE
Confidence            4454444332    69999999998887762       45555677665 44330   3336678898655

>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=95.02  E-value=0.55  Score=35.54  Aligned_cols=97  Identities=15%  Similarity=0.247  Sum_probs=64.6

Q ss_pred             ceec-CcccHHHHHhhcC-CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          251 LVTL-NRTGMENLARLDH-RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       251 v~~l-~~~~f~~~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +..+ +.+++++++   + .+..++|-|+..--+   .....|.++|+.+.+ .+.|+...   + .++. ..+++. .|
T Consensus         2 v~~i~~~~~~e~~~---~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~-d~~F~~~~---~-~~~~-~~~~~~-~~   68 (102)
T cd03066           2 VEIINSERELQAFE---NIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP-YIKFFATF---D-SKVA-KKLGLK-MN   68 (102)
T ss_pred             ceEcCCHHHHHHHh---cccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc-CCEEEEEC---c-HHHH-HHcCCC-CC
Confidence            3445 334466655   3 456666666665433   466789999999976 67885432   3 5666 677664 79


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++++++.......|.+|..+.+.|.+||+.-
T Consensus        69 ~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~  100 (102)
T cd03066          69 EVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH  100 (102)
T ss_pred             cEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence            99999763333566834478999999999753

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.02  E-value=0.07  Score=40.58  Aligned_cols=58  Identities=19%  Similarity=0.348  Sum_probs=38.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~  337 (361)
                      +|.|..+||+.|+.++..|.+    +.- ...++.+|-+.+..++-+   +--+-+.+|.+++  +|+
T Consensus        16 VVifSKs~C~~c~~~k~ll~~----~~v-~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk   76 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD----LGV-NPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK   76 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh----CCC-CCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence            677999999999998888877    332 567777776655333331   2223558888655  455

>KOG1706 consensus Argininosuccinate synthase [Amino acid transport and metabolism]

Probab=94.53  E-value=0.42  Score=43.03  Aligned_cols=56  Identities=14%  Similarity=0.288  Sum_probs=43.3

Q ss_pred             CcEEEEecchHH-HHHHHHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 018045           10 NDIAIAFSGAED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM   67 (361)
Q Consensus        10 ~~i~vs~SGGKD-S~~l~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~   67 (361)
                      ..+++|+|||-| |++|.++.+.+.++.++..|.|.  .|-.+-+++-+.+.|.+-.++
T Consensus         6 ~~vVLAySGgLDTscil~WLkeqGyeViay~AnvGQ--~edfe~ar~kAlk~Gakk~~~   62 (412)
T KOG1706|consen    6 KSVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQ--KEDFEEARKKALKSGAKKVVV   62 (412)
T ss_pred             ceEEEEecCCcCchhhhHHHHhcCceEEEeeccccc--hhhHHHHHHhhhhcCceEEEe
Confidence            478999999999 56678888899999999999996  455555666677777754443

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=94.53  E-value=0.089  Score=50.61  Aligned_cols=51  Identities=14%  Similarity=0.355  Sum_probs=39.2

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH---HHHHc---------CCCCCCCeEEE
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE---YAKQK---------LQLGSFPTILF  332 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~---l~~~~---------~~v~~~Pt~~~  332 (361)
                      ++.|..+|||+|+..+..|.+.       ++.|..||+++. +.   +. ++         .+.+++|++++
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~~-------gi~~~~idi~~~-~~~~~~~-~~~~~~~~~~~~g~~tvP~ifi   66 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGAN-------DIPFTQISLDDD-VKRAEFY-AEVNKNILLVEEHIRTVPQIFV   66 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-------CCCeEEEECCCC-hhHHHHH-HHHhhccccccCCCCccCeEEE
Confidence            7889999999999999887763       588888999876 42   22 12         36778999866

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1

Probab=94.51  E-value=0.13  Score=52.43  Aligned_cols=107  Identities=15%  Similarity=0.082  Sum_probs=61.7

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCC-CCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH---HHHHhcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTG-RLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ---ALVRSKGL   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg-~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~---~~~~~~~~   83 (361)
                      .+|.+..|||-||.++ .++.+. ..++..+.+... ..+.|. .+++.+++++|.+.+++..+...+.   ......+.
T Consensus       259 ~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~~~~~dE~-~~A~~vA~~~g~~h~~~~~~~~~~~~~~~~~~~~~~  337 (628)
T TIGR03108       259 VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFDDPAFDES-AYARQVAERYGTNHRVETVDPDDFSLVDRLAGLYDE  337 (628)
T ss_pred             CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecCCCCCChH-HHHHHHHHHhCCCCeEEecCHHHHHHHHHHHHHhCC
Confidence            3678889999999866 565553 445655544432 234554 8899999999999877655443322   22222222


Q ss_pred             CCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCc
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSP  123 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~  123 (361)
                      |..  ....+..    ....+.+.++.+++++|.-+||-.
T Consensus       338 P~~--~~~~~~~----~~~~~~a~~~~kV~LsG~GgDElf  371 (628)
T TIGR03108       338 PFA--DSSALPT----YRVCELARKRVTVALSGDGGDELF  371 (628)
T ss_pred             CCC--CchHHHH----HHHHHHHHCCCCEEEeccchhhcc
Confidence            211  1111111    111122234678999999999964

The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=94.48  E-value=0.13  Score=42.22  Aligned_cols=42  Identities=17%  Similarity=0.195  Sum_probs=35.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHh--cCCCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~--~~~~v~~~~vd~  310 (361)
                      ..+.+|+.|+...|++|..+.+.+.++.+.+  .+ .+.|...+.
T Consensus        11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~   54 (162)
T PF13462_consen   11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV   54 (162)
T ss_dssp             TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence            5678899999999999999999999999998  55 788888765

...

>PTZ00062 glutaredoxin; Provisional

Probab=94.27  E-value=0.18  Score=43.41  Aligned_cols=47  Identities=19%  Similarity=0.388  Sum_probs=32.9

Q ss_pred             CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEE
Q 018045          278 APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILF  332 (361)
Q Consensus       278 a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~  332 (361)
                      +|+|++|+++...|.+.       ++.|..+|++.+ .++..   +..+-..+|.+++
T Consensus       125 ~p~C~~C~~~k~~L~~~-------~i~y~~~DI~~d-~~~~~~l~~~sg~~TvPqVfI  174 (204)
T PTZ00062        125 FPFCRFSNAVVNMLNSS-------GVKYETYNIFED-PDLREELKVYSNWPTYPQLYV  174 (204)
T ss_pred             CCCChhHHHHHHHHHHc-------CCCEEEEEcCCC-HHHHHHHHHHhCCCCCCeEEE
Confidence            37999999998888753       477888898877 44330   2335567888664

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=94.10  E-value=0.14  Score=42.19  Aligned_cols=44  Identities=25%  Similarity=0.317  Sum_probs=33.7

Q ss_pred             CCcEEEEEE-CCCChhHHhh-HHHHHHHHHHhcCCCe-EEEEEEcCC
Q 018045          269 QEPWLVVLY-APWCQFCQAM-EGSYVELADKLAGNGV-KVGKFRADG  312 (361)
Q Consensus       269 ~~~vlv~F~-a~wC~~C~~~-~p~~~~la~~~~~~~v-~~~~vd~~~  312 (361)
                      ++.++|.|| +.||+.|... .+.|.+..+++...++ .++.|..|.
T Consensus        29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~   75 (155)
T cd03013          29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND   75 (155)
T ss_pred             CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence            455666655 8999999998 9999999999876456 477776654

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.00  E-value=0.097  Score=43.81  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=32.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVG  306 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~  306 (361)
                      ..++.|+.|+...||+|+.+.+.+..+.+++++ ++.|.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~   51 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFE   51 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEE
Confidence            578899999999999999999999999998865 55554

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]

Probab=93.48  E-value=0.3  Score=48.74  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCC-ceE-EEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHhc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRP-FRV-FSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRSK   81 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~-i~v-~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~~~~~   81 (361)
                      ..+.+.+|||-||+++ .++.+.... ... +.++++.. ++| .++.+++++.+|.+.+.+.-....+    .+.+...
T Consensus       231 vpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~~~D-~~~a~~~A~~lg~~h~~~~~~~~e~~~~~~~vv~~~  309 (542)
T COG0367         231 VPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSDSPD-AKYARAVAKFLGTPHHEIILTNEELLNALPEVVKAL  309 (542)
T ss_pred             CcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCCCch-HHHHHHHHHHhCCCcEEEeecHHHHHHHHHHHHhhc
Confidence            5788889999999877 677775433 222 56666655 445 4889999999999776554333222    2223222


Q ss_pred             CCCCCCccchhchhhccccHHHHHHHc-----cCCEEEEeeeccCCc
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRALK-----GLRAWITGQRKDQSP  123 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~-----~~~~~i~G~R~~Es~  123 (361)
                      ..|..    ...+      -|+--..+     +.+++++|.-+||-.
T Consensus       310 ~~p~~----~~~~------~ply~~~~~a~~~g~kVvLSGeGADElF  346 (542)
T COG0367         310 DTPGG----MAAS------IPLYLLSRKARAEGEKVVLSGEGADELF  346 (542)
T ss_pred             CCCCc----ccch------hHHHHHHHhhhhcCcEEeecCccHHHHh
Confidence            22211    1111      12221111     447899999999965

>PLN02549 asparagine synthase (glutamine-hydrolyzing)

Probab=93.32  E-value=0.21  Score=50.19  Aligned_cols=58  Identities=19%  Similarity=0.233  Sum_probs=39.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC----------CCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG----------RPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFPD   70 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~----------~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p~   70 (361)
                      .++.+.+|||-||+++ .++.+..          +++..+.  .|.+ .|| ..+++.+++.+|.+.+.+...
T Consensus       226 vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfs--ig~~~~~D-~~~Ar~vA~~lg~~h~ev~~~  295 (578)
T PLN02549        226 VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFC--VGLEGSPD-LKAAREVADYLGTVHHEFHFT  295 (578)
T ss_pred             CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEe--cCCCCCCH-HHHHHHHHHHhCCCCeEEEEC
Confidence            4689999999999877 6776641          2333333  3433 454 568999999999987765443

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase

Probab=93.18  E-value=0.51  Score=47.75  Aligned_cols=106  Identities=17%  Similarity=0.131  Sum_probs=63.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCC----CCcHHHHHHHHHHHHHhCCcEEEEcCChHH----HHHHHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTG----RLNPETYRFFDEVEKHFGIRIEYMFPDAVE----VQALVR   79 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg----~~~pet~~~v~~~~~~~g~~i~~~~p~~~~----~~~~~~   79 (361)
                      .++.+.+|||-||.++ .++.+. ..++..+.+...    ..+.|. +|++.+++++|.+.+.+......    +...+.
T Consensus       261 ~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~~~~~~~~dE~-~~A~~vA~~~g~~h~~i~~~~~~~~~~l~~~v~  339 (589)
T TIGR03104       261 VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFEDVGGEKGDEF-EYSDIIAERFHTRHHKIRIPNHRVLPALPEAVA  339 (589)
T ss_pred             CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEecCCCCCCCChH-HHHHHHHHHhCCcCeEEEcCHHHHHHHHHHHHH
Confidence            4688999999999877 666664 334555444322    135554 78999999999988776654332    233333


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHH-ccCCEEEEeeeccCCc
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSP  123 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es~  123 (361)
                      ..+.|...  ......     ..+.+.. ++.+++++|.=+||-.
T Consensus       340 ~~~~P~~~--~~~~~~-----~~l~~~a~~~~kV~LsGeGaDElF  377 (589)
T TIGR03104       340 AMSEPMVS--HDCVAF-----YLLSEEVSKHVKVVQSGQGADEVF  377 (589)
T ss_pred             HhCCCCCC--chHHHH-----HHHHHHHhCCCeEEeecCchHhcc
Confidence            33333211  111111     1123333 3678999999999975

Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.

>PLN02339 NAD+ synthase (glutamine-hydrolysing)

Probab=92.43  E-value=0.58  Score=48.27  Aligned_cols=60  Identities=13%  Similarity=0.136  Sum_probs=45.2

Q ss_pred             CcEEEEecchHHHHHH-HHH-------HH-c--CCC----------------------------ceEEEccCCCCcHHHH
Q 018045           10 NDIAIAFSGAEDVALI-EYA-------HL-T--GRP----------------------------FRVFSLDTGRLNPETY   50 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~-------~~-~--~~~----------------------------i~v~~~dtg~~~pet~   50 (361)
                      .+++|+.|||-||++. .|+       .+ .  +..                            +..++.-+-.--++|+
T Consensus       349 ~g~vlglSGGiDSa~~a~lv~~~~~~~~~a~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~mp~~~ss~~t~  428 (700)
T PLN02339        349 SGFLLPLSGGADSSSVAAIVGSMCQLVVKAIREGDEQVKADARRIGNYADGEVPTDSKEFAKRIFYTVYMGSENSSEETR  428 (700)
T ss_pred             CeEEEEccCCHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhhccccccccccchhhhhcceeEEEECCCCCCCHHHH
Confidence            6899999999999864 442       12 2  211                            3556677667779999


Q ss_pred             HHHHHHHHHhCCcEEEEcC
Q 018045           51 RFFDEVEKHFGIRIEYMFP   69 (361)
Q Consensus        51 ~~v~~~~~~~g~~i~~~~p   69 (361)
                      +-++.+++.+|+....+.-
T Consensus       429 ~~A~~la~~lG~~~~~i~I  447 (700)
T PLN02339        429 SRAKQLADEIGSSHLDVKI  447 (700)
T ss_pred             HHHHHHHHHHCCCEEEEeC
Confidence            9999999999999877643

>PTZ00077 asparagine synthetase-like protein; Provisional

Probab=92.37  E-value=0.37  Score=48.61  Aligned_cols=107  Identities=12%  Similarity=0.183  Sum_probs=61.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC------------CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH----
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV----   72 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~------------~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~----   72 (361)
                      .++.+.+|||-||.++ .++.+..            .++..+.+... ..|| ..+++.+++.+|.+.+.+.....    
T Consensus       238 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~-~~~D-~~~Ar~vA~~lg~~h~~i~~~~~e~~~  315 (586)
T PTZ00077        238 VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE-GSPD-LKAARKVAEYLGTEHHEFTFTVEEGID  315 (586)
T ss_pred             CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC-CCch-HHHHHHHHHHhCCcCcEEEECHHHHHH
Confidence            4688999999999877 6776642            24554544332 2455 57899999999998876654332    


Q ss_pred             HHHHHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045           73 EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP  123 (361)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~  123 (361)
                      .+...+.....+...  ..+....   +.-+.+.++  +.+++++|.-+||-.
T Consensus       316 ~l~~~i~~le~~~~~--~~~~~~p---~yll~r~a~~~gvkVvLsGeGaDElF  363 (586)
T PTZ00077        316 ALPDVIYHTETYDVT--TIRASTP---MYLLSRRIKALGIKMVLSGEGSDELF  363 (586)
T ss_pred             HHHHHHHHhcCCCCC--CcchHHH---HHHHHHHHHhcCCeEEEecCchhhhc
Confidence            222222222221111  0010111   112333333  468999999999964

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=91.88  E-value=0.61  Score=37.94  Aligned_cols=51  Identities=16%  Similarity=0.203  Sum_probs=36.3

Q ss_pred             EEEEECC------CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCC----CCCCeEEE
Q 018045          273 LVVLYAP------WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQL----GSFPTILF  332 (361)
Q Consensus       273 lv~F~a~------wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v----~~~Pt~~~  332 (361)
                      ++.|+++      +|+.|+.++..|+.+       +|.|-.+|++.+ .+    |. +.++-    ..+|.+++
T Consensus         2 VvlYttsl~giR~t~~~C~~ak~iL~~~-------~V~~~e~DVs~~-~~~~~EL~-~~~g~~~~~~tvPqVFI   66 (147)
T cd03031           2 VVLYTTSLRGVRKTFEDCNNVRAILESF-------RVKFDERDVSMD-SGFREELR-ELLGAELKAVSLPRVFV   66 (147)
T ss_pred             EEEEEcCCcCCCCcChhHHHHHHHHHHC-------CCcEEEEECCCC-HHHHHHHH-HHhCCCCCCCCCCEEEE
Confidence            4567777      899999999888764       588888999876 43    33 33343    57887664

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=91.73  E-value=0.23  Score=42.95  Aligned_cols=40  Identities=28%  Similarity=0.629  Sum_probs=32.4

Q ss_pred             CCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEE
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFR  309 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd  309 (361)
                      +++.||.|+.-.||+|..+.+.+   ..+.+.+.+ ++.|..+.
T Consensus        37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~   79 (207)
T PRK10954         37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYH   79 (207)
T ss_pred             CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEec
Confidence            46779999999999999999976   788888876 56665544

>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds

Probab=91.61  E-value=2.9  Score=31.93  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             eec-CcccHHHHHhhcCCC-CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          252 VTL-NRTGMENLARLDHRQ-EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       252 ~~l-~~~~f~~~~~~~~~~-~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .++ +.+++++++.   .. +.++|-|+..--+   .+...+.++|+.+.+ .+.|+...   + ..+. .++++. .|.
T Consensus         3 ~~i~s~~ele~f~~---~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd-d~~F~~t~---~-~~~~-~~~~~~-~~~   69 (107)
T cd03068           3 KQLQTLKQVQEFLR---DGDDVIIIGVFSGEED---PAYQLYQDAANSLRE-DYKFHHTF---D-SEIF-KSLKVS-PGQ   69 (107)
T ss_pred             eEcCCHHHHHHHHh---cCCCEEEEEEECCCCC---HHHHHHHHHHHhccc-CCEEEEEC---h-HHHH-HhcCCC-CCc
Confidence            444 3455666654   44 6777777765433   466789999999976 68885432   3 4667 677775 577


Q ss_pred             EEEEeC------CCCCeeecCCCCCCHHH-HHHHHHH
Q 018045          330 ILFFPK------HSSKPIKYPSERRDVDS-LMAFVDA  359 (361)
Q Consensus       330 ~~~~~~------g~~~~~~~~~~~~~~~~-l~~~i~~  359 (361)
                      +++|..      =......|.+...+.++ |..||+.
T Consensus        70 vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~  106 (107)
T cd03068          70 LVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE  106 (107)
T ss_pred             eEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence            888732      22335677763245545 9999974

It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.

>PRK09431 asnB asparagine synthetase B; Provisional

Probab=90.77  E-value=0.74  Score=46.15  Aligned_cols=107  Identities=16%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC--------------CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHH-
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG--------------RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVE-   73 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~--------------~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~-   73 (361)
                      .++.+.+|||=||+++ .++.+..              +++..+.+.... .|| ..+++.+++.+|.+.+.+...... 
T Consensus       228 vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~~-~~D-~~~A~~vA~~lg~~h~~v~~t~~e~  305 (554)
T PRK09431        228 VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLEG-SPD-LKAAREVADHLGTVHHEIHFTVQEG  305 (554)
T ss_pred             CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCCC-CCh-HHHHHHHHHHhCCccEEEEeCHHHH
Confidence            4688999999999877 6776642              235545444332 454 588999999999988776554322 


Q ss_pred             ---HHHHHHhcCCCCCCccchhchhhccccHHHHHHH--ccCCEEEEeeeccCCc
Q 018045           74 ---VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSP  123 (361)
Q Consensus        74 ---~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es~  123 (361)
                         +.+.+.......+.  ..+....   +.-+.+.+  .+.+++++|.=+||-.
T Consensus       306 ~~~l~~vi~~le~~dp~--~~~~~~p---~yll~~~~~~~gvkvvLsGeGaDElF  355 (554)
T PRK09431        306 LDALRDVIYHLETYDVT--TIRASTP---MYLMARKIKAMGIKMVLSGEGADELF  355 (554)
T ss_pred             HHHHHHHHHHHhccCCc--cchhHHH---HHHHHHHHHHcCCEEEEecCchhhhh
Confidence               22222222211010  0010110   11123332  3678999999999964

>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA

Probab=89.73  E-value=1.5  Score=30.79  Aligned_cols=61  Identities=11%  Similarity=0.072  Sum_probs=49.7

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      .+..|-+..-+.++.....+.++-+.+-+..+.+--||+.++ ++++ ..++|-.+||++=..
T Consensus         3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-P~lA-e~~~ivAtPtLvk~~   63 (72)
T cd02978           3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-PQLA-EEDKIVATPTLVKVL   63 (72)
T ss_pred             EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-HhHH-hhCCEEEechhhhcC
Confidence            455566666688888888888888887554788999999999 9999 999999999977543

KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor

>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]

Probab=88.95  E-value=0.87  Score=43.29  Aligned_cols=51  Identities=24%  Similarity=0.417  Sum_probs=32.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCC---CceEEEccCCCCcHH------------HHHHHHHHHHHhCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPE------------TYRFFDEVEKHFGI   62 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~---~i~v~~~dtg~~~pe------------t~~~v~~~~~~~g~   62 (361)
                      .+|+|.||||-||+++ +|+...-+   +|.++  ++-++.||            ...-++++...|+-
T Consensus       251 s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLI--NVaF~n~e~~~~~~~PDRktgr~g~~eL~s~~P~  317 (520)
T KOG0573|consen  251 SNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLI--NVAFGNPEGSKEQNVPDRKTGRRGLEELQSLYPK  317 (520)
T ss_pred             CcEEEEecCCchHHHHHHHHHhhcCCCCceeEE--EeeccCCCcccccCCccHHHHHHHHHHHHHhCCc
Confidence            5899999999999888 78888433   34444  33332223            23456777777754

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=88.83  E-value=3.6  Score=38.89  Aligned_cols=99  Identities=13%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             cHHHHHhhcCCCCcEEEEEECCCChhHHhhHH-HH-HH-HHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEE
Q 018045          258 GMENLARLDHRQEPWLVVLYAPWCQFCQAMEG-SY-VE-LADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFF  333 (361)
Q Consensus       258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p-~~-~~-la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~  333 (361)
                      ++-+.+...+.++.+||.|-+---...+.|.- .| .. +++.+.. .+.-++|+..... ..+. .-|.+..+|+++++
T Consensus         7 nipeAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~-~fVaIkiqags~aa~qFs-~IYp~v~vPs~ffI   84 (506)
T KOG2507|consen    7 NIPEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSK-YFVAIKIQAGSVAATQFS-AIYPYVSVPSIFFI   84 (506)
T ss_pred             chHHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhc-ceEEEEeccCchhhhhhh-hhcccccccceeee
Confidence            44555555667888888888877676766662 22 22 2333332 4555566544321 3455 67889999999999


Q ss_pred             -eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          334 -PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       334 -~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                       ..|.  ++....|..++++|..-|+++
T Consensus        85 g~sGt--pLevitg~v~adeL~~~i~Kv  110 (506)
T KOG2507|consen   85 GFSGT--PLEVITGFVTADELASSIEKV  110 (506)
T ss_pred             cCCCc--eeEEeeccccHHHHHHHHHHH
Confidence             4555  666666678899999988875

>PHA03075 glutaredoxin-like protein; Provisional

Probab=86.79  E-value=1.1  Score=34.31  Aligned_cols=29  Identities=24%  Similarity=0.591  Sum_probs=25.6

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHh
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKL  298 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~  298 (361)
                      |.++|.|..|.|+-|......+.++..+|
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY   30 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEY   30 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhccc
Confidence            56899999999999999999997777665

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=86.73  E-value=3  Score=28.88  Aligned_cols=53  Identities=9%  Similarity=0.200  Sum_probs=34.8

Q ss_pred             EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEE
Q 018045          274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF  332 (361)
Q Consensus       274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~  332 (361)
                      +.|+.++|+.|++.+-.+.+..     -.+.+..+|......++. +......+|++..
T Consensus         2 ~ly~~~~~p~~~rv~~~L~~~g-----l~~e~~~v~~~~~~~~~~-~~np~~~vP~L~~   54 (71)
T cd03060           2 ILYSFRRCPYAMRARMALLLAG-----ITVELREVELKNKPAEML-AASPKGTVPVLVL   54 (71)
T ss_pred             EEEecCCCcHHHHHHHHHHHcC-----CCcEEEEeCCCCCCHHHH-HHCCCCCCCEEEE
Confidence            4678999999999876665442     134556666543324565 5556778999853

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues []

Probab=86.63  E-value=0.78  Score=27.81  Aligned_cols=22  Identities=14%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             cCcHHHHHHHHHhCCCCCCccc
Q 018045          156 NVKGNDIWNFLRTMDVPINSLH  177 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp~~~lY  177 (361)
                      .|+++|+..|+..+||++.+-.
T Consensus         3 tWs~~~L~~wL~~~gi~~~~~~   24 (38)
T PF10281_consen    3 TWSDSDLKSWLKSHGIPVPKSA   24 (38)
T ss_pred             CCCHHHHHHHHHHcCCCCCCCC
Confidence            5999999999999999987643

>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=85.46  E-value=14  Score=28.08  Aligned_cols=107  Identities=10%  Similarity=0.003  Sum_probs=74.7

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHH---HcCCCC-C
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAK---QKLQLG-S  326 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~---~~~~v~-~  326 (361)
                      ..|+.+++-++=. .+.++..++.|--+--+.=.+|.+.+.++|+.+.. .++.|+-||=+.. +-+..   +.|+|. .
T Consensus         4 rkl~~~~m~e~we-dd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~F-Pllv~yWektF~IDl~   81 (120)
T cd03074           4 RKLKPENMFETWE-DDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFGIDLF   81 (120)
T ss_pred             hhccHHHHHHhhh-cccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccC-chhhHHHHhhcCcccC
Confidence            4456666544433 33468889999999999999999999999999987 4899999999988 65441   345553 2


Q ss_pred             CCeEEEEeC--CCCCeeecCC--CCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPK--HSSKPIKYPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~--g~~~~~~~~~--~~~~~~~l~~~i~~~  360 (361)
                      -|.+=+.+-  ....-....+  ...++++|.+||+.+
T Consensus        82 ~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedV  119 (120)
T cd03074          82 RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDV  119 (120)
T ss_pred             CCceeeEecccccceeEecccccccCcHHHHHHHHHhh
Confidence            488777742  2222333333  136899999999875

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=84.61  E-value=10  Score=26.45  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=41.7

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD  351 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~  351 (361)
                      +..|+.+.|+.|+..+-.+.+.       ++.+-.++++... .++.  .-....+|+++.=..|.. ...     .+..
T Consensus         2 i~Ly~~~~~p~c~kv~~~L~~~-------gi~y~~~~~~~~~~~~~~--~~~~~~vP~l~~~~~~~~-~~l-----~eS~   66 (77)
T cd03040           2 ITLYQYKTCPFCCKVRAFLDYH-------GIPYEVVEVNPVSRKEIK--WSSYKKVPILRVESGGDG-QQL-----VDSS   66 (77)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHC-------CCceEEEECCchhHHHHH--HhCCCccCEEEECCCCCc-cEE-----EcHH
Confidence            4578889999999988655544       2444444444321 2333  335567998875432221 122     2346


Q ss_pred             HHHHHHHHh
Q 018045          352 SLMAFVDAL  360 (361)
Q Consensus       352 ~l~~~i~~~  360 (361)
                      .+.++|++.
T Consensus        67 ~I~~yL~~~   75 (77)
T cd03040          67 VIISTLKTY   75 (77)
T ss_pred             HHHHHHHHH
Confidence            777777653

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=84.22  E-value=8.6  Score=27.06  Aligned_cols=71  Identities=11%  Similarity=0.119  Sum_probs=42.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD  349 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~  349 (361)
                      +..|+.++|+.|++.+-.+.+.       ++.+-.++++..+   .++. +.-....+|+++.- +|.  ...     ..
T Consensus         2 ~~Ly~~~~sp~~~kv~~~L~~~-------gi~y~~~~v~~~~~~~~~~~-~~~p~~~vP~l~~~-~~~--~~l-----~e   65 (77)
T cd03041           2 LELYEFEGSPFCRLVREVLTEL-------ELDVILYPCPKGSPKRDKFL-EKGGKVQVPYLVDP-NTG--VQM-----FE   65 (77)
T ss_pred             ceEecCCCCchHHHHHHHHHHc-------CCcEEEEECCCChHHHHHHH-HhCCCCcccEEEeC-CCC--eEE-----Ec
Confidence            4567788999999877666554       3445445655431   2343 33345679987542 222  222     23


Q ss_pred             HHHHHHHHHH
Q 018045          350 VDSLMAFVDA  359 (361)
Q Consensus       350 ~~~l~~~i~~  359 (361)
                      ...|.++|++
T Consensus        66 s~~I~~yL~~   75 (77)
T cd03041          66 SADIVKYLFK   75 (77)
T ss_pred             HHHHHHHHHH
Confidence            5778888765

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR02654 circ_KaiB circadian clock protein KaiB

Probab=84.20  E-value=3.8  Score=29.93  Aligned_cols=65  Identities=8%  Similarity=-0.094  Sum_probs=52.5

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      ..++=.|.|..-+.++.....+.++-+.+-...+.+--||+.++ ++++ ..++|-.+||++=....
T Consensus         3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-P~lA-E~~~IvATPtLIK~~P~   67 (87)
T TIGR02654         3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-PQLA-EEDKILATPTLSKILPP   67 (87)
T ss_pred             eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCEEEecHHhhcCCC
Confidence            45666777888888999888888887765443688888999999 9999 99999999997766444

Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=83.94  E-value=7.7  Score=34.35  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcC-CCe----EEEEEEcCCCc-------------------------hH
Q 018045          268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAG-NGV----KVGKFRADGDQ-------------------------KE  316 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~-~~v----~~~~vd~~~~~-------------------------~~  316 (361)
                      .++-+|++|.=+.||. |=.....+..+.+.++. .++    .|+.||=+.+.                         ..
T Consensus       138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~  217 (280)
T KOG2792|consen  138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ  217 (280)
T ss_pred             ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence            6899999999999874 66666566665555544 122    46666643331                         35


Q ss_pred             HHHHcCCCCCCC-------------eEEEE---eCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          317 YAKQKLQLGSFP-------------TILFF---PKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       317 l~~~~~~v~~~P-------------t~~~~---~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +| ++|.|.--+             |+++|   ++|+  .+.|-|..++++++.+-|.+
T Consensus       218 va-k~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~--Fvd~~GrN~~~~~~~~~I~~  273 (280)
T KOG2792|consen  218 VA-KKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGE--FVDYYGRNYDADELADSILK  273 (280)
T ss_pred             HH-HHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcc--eehhhcccCCHHHHHHHHHH
Confidence            67 677664222             34555   4455  88888888899998887653

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=83.46  E-value=17  Score=29.68  Aligned_cols=44  Identities=23%  Similarity=0.297  Sum_probs=34.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG  312 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~  312 (361)
                      .++.+||.=.|+-|+.--+. ..|+.|.+.|++.++.++.+=|+.
T Consensus        24 ~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQ   67 (162)
T COG0386          24 KGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQ   67 (162)
T ss_pred             CCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccc
Confidence            68999999999999976643 367778888877778888777754

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=83.11  E-value=1.6  Score=33.11  Aligned_cols=78  Identities=10%  Similarity=0.126  Sum_probs=43.1

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEEEeCCCCCeeecC----C
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYP----S  345 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~----~  345 (361)
                      +..|+.++|+.|+.....+++.       ++.|-.+|+.++.   .++. +-.+-.+.+.--++..... ...-.    .
T Consensus         1 i~iY~~~~C~~c~ka~~~L~~~-------~i~~~~idi~~~~~~~~~l~-~~~~~~~~~~~~li~~~~~-~~~~l~~~~~   71 (105)
T cd02977           1 ITIYGNPNCSTSRKALAWLEEH-------GIEYEFIDYLKEPPTKEELK-ELLAKLGLGVEDLFNTRGT-PYRKLGLADK   71 (105)
T ss_pred             CEEEECCCCHHHHHHHHHHHHc-------CCCcEEEeeccCCCCHHHHH-HHHHhcCCCHHHHHhcCCc-hHHHcCCccc
Confidence            3578999999999988776653       4677777776531   2333 2223233333333332211 11110    1


Q ss_pred             CCCCHHHHHHHHHH
Q 018045          346 ERRDVDSLMAFVDA  359 (361)
Q Consensus       346 ~~~~~~~l~~~i~~  359 (361)
                      ...+.+++.++|.+
T Consensus        72 ~~ls~~e~~~~l~~   85 (105)
T cd02977          72 DELSDEEALELMAE   85 (105)
T ss_pred             cCCCHHHHHHHHHh
Confidence            14677888887754

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides

Probab=83.09  E-value=16  Score=27.21  Aligned_cols=75  Identities=13%  Similarity=0.094  Sum_probs=48.2

Q ss_pred             CCcE-EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          269 QEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       269 ~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      .++| ++.|..+. ..|..+...++++++.-.  .+.+-..+.       . .     ..|++.+..+|+...+.|.| -
T Consensus        18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd--kI~~~~~~~-------~-~-----~~P~~~i~~~~~~~gIrF~G-i   80 (94)
T cd02974          18 ENPVELVASLDDS-EKSAELLELLEEIASLSD--KITLEEDND-------D-E-----RKPSFSINRPGEDTGIRFAG-I   80 (94)
T ss_pred             CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC--ceEEEEecC-------C-C-----CCCEEEEecCCCcccEEEEe-c
Confidence            4555 44555555 999999999998887653  355532111       1 1     47999999877433577776 4


Q ss_pred             CCHHHHHHHHHHh
Q 018045          348 RDVDSLMAFVDAL  360 (361)
Q Consensus       348 ~~~~~l~~~i~~~  360 (361)
                      -.=.++..||..+
T Consensus        81 P~GhEf~Slilai   93 (94)
T cd02974          81 PMGHEFTSLVLAL   93 (94)
T ss_pred             CCchhHHHHHHHh
Confidence            4456777777654

AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-

>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain

Probab=82.15  E-value=24  Score=28.23  Aligned_cols=91  Identities=10%  Similarity=0.124  Sum_probs=59.8

Q ss_pred             CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-h----------------HHHHHcCCCCC
Q 018045          267 HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-K----------------EYAKQKLQLGS  326 (361)
Q Consensus       267 ~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-~----------------~l~~~~~~v~~  326 (361)
                      .+.|+.+|+.++|--..+..+-...   +.+.+-+++ ++.+-.-|+...+ .                ... +.++...
T Consensus        19 ~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~-nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~-~~~~~~~   96 (136)
T cd02990          19 RDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQ-NFITWGWDMTKESNKARFLSSCTRHFGSVAAQTI-RNIKTDQ   96 (136)
T ss_pred             hhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHc-CEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHH-HhcCcCC
Confidence            3689999999998864444433332   555555665 7888888887651 1                133 5678999


Q ss_pred             CCeEEEEeCCC--CCeeecCCCCCCHHHHHHHHHH
Q 018045          327 FPTILFFPKHS--SKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       327 ~Pt~~~~~~g~--~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +|.+.++-...  ...+....|..++++|.+-|..
T Consensus        97 fP~~avI~~~~~~~~vl~~i~G~~~~~ell~~L~~  131 (136)
T cd02990          97 LPAILIIMGKRSSNEVLNVIQGNTGVDELLMRLIE  131 (136)
T ss_pred             CCeEEEEEecCCceEEEEEEECCCCHHHHHHHHHH
Confidence            99998884322  1234444458899999887754

FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear

>PRK09301 circadian clock protein KaiB; Provisional

Probab=81.69  E-value=9.1  Score=28.90  Aligned_cols=67  Identities=9%  Similarity=-0.052  Sum_probs=54.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      +...++=.|.|..-+..+.....+.++-+.+-...+.+--||+.++ +.++ ..++|-.+||++=.-..
T Consensus         4 ~~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-PelA-E~~~IvATPTLIK~~P~   70 (103)
T PRK09301          4 RKTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-PQLA-EEDKILATPTLAKILPP   70 (103)
T ss_pred             CceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-HhHH-hHCCeEEecHHhhcCCC
Confidence            3466777888888899999988888887765443688888999999 9999 99999999997765443

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=81.04  E-value=9.9  Score=37.85  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=53.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      -.++|-+.++.+-|..|..+...++++++.-.  ++.+..   ...      .    ...|++.+..+|+..-+.|.| -
T Consensus        17 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~--~i~~~~---~~~------~----~~~p~~~~~~~~~~~~i~f~g-~   80 (517)
T PRK15317         17 LERPIELVASLDDSEKSAELKELLEEIASLSD--KITVEE---DSL------D----VRKPSFSITRPGEDTGVRFAG-I   80 (517)
T ss_pred             CCCCEEEEEEeCCCchHHHHHHHHHHHHHhCC--ceEEEE---ccC------C----CCCCEEEEEcCCccceEEEEe-c
Confidence            46677666666689999999999999987753  466532   111      1    247999999877655677776 4


Q ss_pred             CCHHHHHHHHHHh
Q 018045          348 RDVDSLMAFVDAL  360 (361)
Q Consensus       348 ~~~~~l~~~i~~~  360 (361)
                      -.-.+|..||..+
T Consensus        81 P~g~Ef~s~i~~i   93 (517)
T PRK15317         81 PMGHEFTSLVLAL   93 (517)
T ss_pred             CccHHHHHHHHHH
Confidence            4557777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
2goy_A	275	Crystal Structure Of Assimilatory Adenosine 5'- Pho		4e-77
2oq2_A	261	Crystal Structure Of Yeast Paps Reductase With Pap,		1e-14
2o8v_A	252	Paps Reductase In A Covalent Complex With Thioredox		3e-13
1sur_A	215	Phospho-Adenylyl-Sulfate Reductase Length = 215		2e-10
2dj3_A	133	The Solution Structure Of The Third Thioredoxin Dom		3e-07
2dml_A	130	The Solution Structure Of The First Thioredoxin Dom		1e-06
2b5e_A	504	Crystal Structure Of Yeast Protein Disulfide Isomer		4e-06
1mek_A	120	Human Protein Disulfide Isomerase, Nmr, 40 Structur		5e-06
3f8u_A	481	TapasinERP57 HETERODIMER Length = 481		2e-04
2dmm_A	142	The Solution Structure Of The Second Thioredoxin Do		2e-04
2diz_A	117	The Solution Structure Of The Third Thioredoxin Dom		3e-04
3uvt_A	111	Crystal Structure Of The Third Catalytic Domain Of		4e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		4e-04
3uj1_A	110	Crystal Structure Of The Third Thioredoxin Domain O		5e-04
3ed3_A	298	Crystal Structure Of The Yeast DithiolDISULFIDE Oxi		7e-04

>pdb|2GOY|A Chain A, Crystal Structure Of Assimilatory Adenosine 5'- Phosphosulfate Reductase With Bound Aps Length = 275

Iteration: 1
 Score =  284 bits (727), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 126/221 (57%), Positives = 168/221 (76%), Gaps = 3/221 (1%)
Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           +  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+
Sbjct: 46  LKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHY 105
Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+D
Sbjct: 106 GIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRD 165
Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRS++ V+++D  F   E     L K+NP++++   ++W ++R +++P NSLH +G
Sbjct: 166 QSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERG 222
Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 221
           YISIGCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+
Sbjct: 223 YISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL 263

>pdb|2OQ2|A Chain A, Crystal Structure Of Yeast Paps Reductase With Pap, A Product Complex Length = 261

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 19/188 (10%)
Query: 40  LDTGRLNPETYRFFDEVEKHF----GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECC 95
           +DT    P+T    +E+EK +       I    PD  E +A   SK     +E    +  
Sbjct: 76  IDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYD 135
Query: 96  RVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP 153
            + KV P  RA K L   A  TG+RK Q    RS++ ++++D +          ++K NP
Sbjct: 136 YLAKVEPAHRAYKELHISAVFTGRRKSQGSA-RSQLSIIEIDEL--------NGILKINP 186
Query: 154 VANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAK- 212
           + N     +  ++   +VP N L   GY SIG    T+PV  G+ ER GRW     KAK 
Sbjct: 187 LINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW---KGKAKT 243
Query: 213 ECGLHKGN 220
           ECG+H+ +
Sbjct: 244 ECGIHEAS 251

>pdb|2O8V|A Chain A, Paps Reductase In A Covalent Complex With Thioredoxin C35a Length = 252

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 13/169 (7%)
Query: 37  VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCR 96
           V   DTG L PETYRF DE+     + ++             R   L+    +G ++   
Sbjct: 74  VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 133
Query: 97  VRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154
           + KV P+ RALK L A  W  G R++QS G+R+ +PV+        ++ GV  ++   P+
Sbjct: 134 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVL-------AIQRGVFKVL---PI 182
Query: 155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGR 203
            +     I+ +L+   +  + L  +GY+S+G    TR   PG  E E R
Sbjct: 183 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETR 231

>pdb|1SUR|A Chain A, Phospho-Adenylyl-Sulfate Reductase Length = 215

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 13/151 (8%)
Query: 37  VFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCR 96
           V   DTG L PETYRF DE+     + ++             R   L+    +G ++   
Sbjct: 73  VILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYND 132
Query: 97  VRKVRPLRRALKGLRA--WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPV 154
           + KV P+ RALK L A  W  G R++QS G+R+ +PV+        ++ GV  ++   P+
Sbjct: 133 INKVEPMNRALKELNAQTWFAGLRREQS-GSRANLPVL-------AIQRGVFKVL---PI 181
Query: 155 ANVKGNDIWNFLRTMDVPINSLHSQGYISIG 185
            +     I+ +L+   +  + L  +GY+S+G
Sbjct: 182 IDWDNRTIYQYLQKHGLKYHPLWDEGYLSVG 212

>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A4 Length = 133

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           L+  YAPWC  C+ +E  Y  L  K  G    V   + D    +    + ++  FPTI F
Sbjct: 29  LIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLV-IAKMDATANDITNDQYKVEGFPTIYF 87
Query: 333 FPKHSSK-PIKYPSERRDVDSLMAFVD 358
            P    K PIK+    RD++ L  F+D
Sbjct: 88  APSGDKKNPIKFEGGNRDLEHLSKFID 114

>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of Mouse Protein Disulfide-Isomerase A6 Length = 130

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
           WLV  YAPWC  CQ +   + + A  L  + VKVG   AD  Q    +  +Q   FPTI 
Sbjct: 38  WLVEFYAPWCGHCQRLTPEWKKAATALK-DVVKVGAVNADKHQSLGGQYGVQ--GFPTIK 94
Query: 332 FFPKHSSKPIKYPSERRDVDSLMAFVDALR 361
            F  + +KP  Y   R     + A + ALR
Sbjct: 95  IFGANKNKPEDYQGGRTGEAIVDAALSALR 124

>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase Length = 504

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 244 DIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGV 303
           +IF +Q+       G  +   ++  ++  LV+ YAPWC  C+ +  +Y ELAD  A    
Sbjct: 351 EIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATS 410
Query: 304 KVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFV 357
            V    A  D  E   + + +  +PTI+ +P    S+ + Y   R  +DSL  F+
Sbjct: 411 DV--LIAKLDHTENDVRGVVIEGYPTIVLYPGGKKSESVVYQGSRS-LDSLFDFI 462

>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures Length = 120

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 40/82 (48%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           LV  YAPWC  C+A+   Y + A KL   G ++   + D  ++    Q+  +  +PTI F
Sbjct: 28  LVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKF 87
Query: 333 FPKHSSKPIKYPSERRDVDSLM 354
           F    +   K  +  R+ D ++
Sbjct: 88  FRNGDTASPKEYTAGREADDIV 109

>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER Length = 481

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 265 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQ 323
           +++  +  L+  YAPWC  C+ +E  Y EL +KL+ +  + + K  A  +         +
Sbjct: 366 VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND---VPSPYE 422
Query: 324 LGSFPTILFFPKHSS-KPIKYPSERRDVD 351
           +  FPTI F P +    P KY   R   D
Sbjct: 423 VRGFPTIYFSPANKKLNPKKYEGGRELSD 451

>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of Human Protein Disulfide-Isomerase A3 Length = 142

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 265 LDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQ 323
           +++  +  L+  YAPWC  C+ +E  Y EL +KL+ +  + + K  A  +         +
Sbjct: 41  VNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAND---VPSPYE 97
Query: 324 LGSFPTILFFPKHSS-KPIKY 343
           +  FPTI F P +    P KY
Sbjct: 98  VRGFPTIYFSPANKKLNPKKY 118

>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of Human Thioredoxin Domain-Containing Protein 5 Length = 117

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
            +  YAPWC  C+ +  ++ EL+ K    LA  GVK+ +     ++   +K  ++   +P
Sbjct: 27  FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 82
Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           T+L F     K +   S  RD+DSL  FV
Sbjct: 83  TLLLF--RGGKKVSEHSGGRDLDSLHRFV 109

>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46 Length = 111

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
            +  YAPWC  C+ +  ++ EL+ K    LA  GVK+ +     ++   +K  ++   +P
Sbjct: 25  FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 80
Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           T+L F     K +   S  RD+DSL  FV
Sbjct: 81  TLLLF--RGGKKVSEHSGGRDLDSLHRFV 107

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 240 EAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA 299
           E + D+ N  ++V+L  +    L +     E W+V  Y+PW    Q +   +  +A  L 
Sbjct: 535 EFIEDLRNP-SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLT 593
Query: 300 GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE---RRDVDSLMAF 356
           G  + VG     G    +  Q+  +  +P I F+P+ SSK  +Y S     RD  SL ++
Sbjct: 594 G-LINVGSVDC-GQYHSFCTQE-NVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSW 650

>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human Erp46 Length = 110

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADK----LAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
            +  YAPWC  C+ +  ++ EL+ K    LA  GVK+ +     ++   +K  ++   +P
Sbjct: 20  FIKFYAPWCGHCKTLAPTWEELSKKEFPGLA--GVKIAEVDCTAERNICSKYSVR--GYP 75
Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           T+L F     K +   S  RD+DSL  FV
Sbjct: 76  TLLLF--RGGKKVSEHSGGRDLDSLHRFV 102

>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE Oxidoreductase Mpd1p Length = 298

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           LV  YAPWC  C+ +  ++ + A +L G  V+V     D ++ +    K  +  FPT++ 
Sbjct: 39  LVEFYAPWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLNKNKALCAKYDVNGFPTLMV 97
Query: 333 F--PKHS-SKPI 341
           F  PK   SKPI
Sbjct: 98  FRPPKIDLSKPI 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
2goy_A	275	Adenosine phosphosulfate reductase; iron sulfur cl	1e-92
2o8v_A	252	Phosphoadenosine phosphosulfate reductase; disulfi	1e-90
2oq2_A	261	Phosphoadenosine phosphosulfate reductase; sulfate	5e-79
1sur_A	215	PAPS reductase; assimilatory sulfate reduction, 3-	2e-72
2wsi_A	306	FAD synthetase; transferase, nucleotidyltransferas	1e-47
3fwk_A	308	FMN adenylyltransferase; FAD biosynthesis, alpha/b	1e-42
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	4e-19
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	3e-18
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	6e-18
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	1e-17
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	1e-16
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	3e-16
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	7e-16
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-12
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-10
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	9e-16
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	3e-14
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	1e-15
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	4e-15
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	2e-14
1mek_A	120	Protein disulfide isomerase; electron transport, r	4e-15
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	7e-15
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	9e-15
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	4e-05
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	1e-14
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	9e-13
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	2e-14
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	2e-13
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	7e-05
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	2e-13
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	1e-12
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	1e-12
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	3e-12
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	9e-05
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	5e-11
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	3e-10
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	5e-10
1zun_A	325	Sulfate adenylyltransferase subunit 2; beta barrel	2e-09
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	5e-08
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	5e-08
2l57_A	126	Uncharacterized protein; structural genomics, unkn	8e-08
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	2e-07
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	3e-07
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	1e-06
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	2e-06
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	7e-06
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	8e-06
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	9e-06
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	1e-05
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	2e-05
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	2e-05
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	2e-05
2kuc_A	130	Putative disulphide-isomerase; structural genomics	4e-05
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	6e-05
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	7e-05
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	9e-05
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	1e-04
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	2e-04
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	2e-04
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	2e-04
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	2e-04
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	2e-04
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	2e-04
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	2e-04
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	2e-04
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	2e-04
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	2e-04
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	3e-04
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	3e-04
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	4e-04
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	4e-04
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	4e-04
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	4e-04
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	5e-04
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	5e-04
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	5e-04
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	6e-04
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	6e-04
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	6e-04
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	6e-04
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	7e-04
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	7e-04
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	8e-04

>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa} Length = 275

 Score =  277 bits (710), Expect = 1e-92
 Identities = 125/233 (53%), Positives = 172/233 (73%), Gaps = 3/233 (1%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF 60
           +  A E FG+++ I+FSGAEDV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+
Sbjct: 46  LKAAFEHFGDELWISFSGAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHY 105

Query: 61  GIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKD 120
           GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+D
Sbjct: 106 GIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRD 165

Query: 121 QSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQG 180
           QSPGTRS++ V+++D  F   E  +    K+NP++++   ++W ++R +++P NSLH +G
Sbjct: 166 QSPGTRSQVAVLEIDGAFSTPEKPL---YKFNPLSSMTSEEVWGYIRMLELPYNSLHERG 222

Query: 181 YISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNGNGN 233
           YISIGCEPCTRPVLP QHEREGRWWWE+A  KECGLH GN+  +    + + +
Sbjct: 223 YISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNLISKALEHHHHHH 275

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} Length = 252

 Score =  271 bits (694), Expect = 1e-90
 Identities = 58/222 (26%), Positives = 99/222 (44%), Gaps = 17/222 (7%)

Query: 1   MDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 59
           +  AL+    +  ++ S G +    +   +       V   DTG L PETYRF DE+   
Sbjct: 37  VAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDK 96

Query: 60  FGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQ 117
             + ++             R   L+    +G ++   + KV P+ RALK L  + W  G 
Sbjct: 97  LKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGL 156

Query: 118 RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 177
           R++QS  +R+ +PV+ +             + K  P+ +     I+ +L+   +  + L 
Sbjct: 157 RREQSG-SRANLPVLAIQR----------GVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW 205

Query: 178 SQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKG 219
            +GY+S+G    TR   PG  E E R++      +ECGLH+G
Sbjct: 206 DEGYLSVGDTHTTRKWEPGMAEEETRFFGL---KRECGLHEG 244

>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae} Length = 261

 Score =  242 bits (618), Expect = 5e-79
 Identities = 59/229 (25%), Positives = 97/229 (42%), Gaps = 20/229 (8%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAH---LTGRPFRVFSLDTGRLNPETYRFFDEVE 57
           +  ++  F +       G   +  I+             +  +DT    P+T    +E+E
Sbjct: 34  IAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIE 93

Query: 58  KHFG----IRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKG--LR 111
           K +       I    PD  E +A   SK     +E    +   + KV P  RA K   + 
Sbjct: 94  KKYYQPKNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHIS 153

Query: 112 AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDV 171
           A  TG+RK Q    RS++ ++++D +          ++K NP+ N     +  ++   +V
Sbjct: 154 AVFTGRRKSQGS-ARSQLSIIEIDEL--------NGILKINPLINWTFEQVKQYIDANNV 204

Query: 172 PINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGN 220
           P N L   GY SIG    T+PV  G+ ER GRW  +     ECG+H+ +
Sbjct: 205 PYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGKA--KTECGIHEAS 251

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2 Length = 215

 Score =  223 bits (570), Expect = 2e-72
 Identities = 45/189 (23%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 1   MDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 59
           +  AL+    +  ++ S G +    +   +       V   DTG L PETYRF DE+   
Sbjct: 36  VAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDK 95

Query: 60  FGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL--RAWITGQ 117
             + ++             R   L+    +G ++   + KV P+ RALK L  + W  G 
Sbjct: 96  LKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGL 155

Query: 118 RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 177
           R++QS  +R+ +PV+ +             + K  P+ +     I+ +L+   +  + L 
Sbjct: 156 RREQSG-SRANLPVLAIQ----------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW 204

Query: 178 SQGYISIGC 186
            +GY+S+G 
Sbjct: 205 DEGYLSVGD 213

>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae} Length = 306

 Score =  162 bits (410), Expect = 1e-47
 Identities = 41/253 (16%), Positives = 78/253 (30%), Gaps = 22/253 (8%)

Query: 1   MDRALEKFG---NDIAIAFSGAED--VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDE 55
           +     ++     +I+ +++G +D  V L+ Y       F + + ++             
Sbjct: 42  LSEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQR 101

Query: 56  VEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK---GLRA 112
           +   F I  E  FP           +   S YE   Q    V      R  +K      A
Sbjct: 102 LPTVF-IDQEETFPTLENFVLETSERYCLSLYESQRQSGASVNMADAFRDFIKIYPETEA 160

Query: 113 WITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVP 172
            + G R    P   +  P+ + D             ++  P+ +    +IW+FL   + P
Sbjct: 161 IVIGIRHTD-PFGEALKPIQRTDS-------NWPDFMRLQPLLHWDLTNIWSFLLYSNEP 212

Query: 173 INSLHSQGYISIGCEPCTRP-----VLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAA 227
           I  L+ +G+ SIG    + P                W    A  K+    + +       
Sbjct: 213 ICGLYGKGFTSIGGINNSLPNPHLRKDSNNPALHFEWEIIHAFGKDAEGERSSAINTSPI 272

Query: 228 VNGNGNGAGNASE 240
              +        +
Sbjct: 273 SVVDKERFSKYHD 285

>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A* Length = 308

 Score =  149 bits (376), Expect = 1e-42
 Identities = 34/253 (13%), Positives = 74/253 (29%), Gaps = 18/253 (7%)

Query: 1   MDRALEKFG---NDIAIAFSGAED-VALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEV 56
           ++    K+     +I+ +++G +D   L+         + +  L   + + + +RF    
Sbjct: 47  INETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTK 106

Query: 57  EKHFGIRIEYMFPDAVE-VQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWIT 115
                I  +  F      ++       L  +  D  +            +     +A + 
Sbjct: 107 LPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVI 166

Query: 116 GQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINS 175
           G R    P      P+ + D              +  P+ +    +IW+FL   + PI  
Sbjct: 167 GIRHTD-PFGEHLKPIQKTDA-------NWPDFYRLQPLLHWNLANIWSFLLYSNEPICE 218

Query: 176 LHSQGYISIGCEPCTRP-----VLPGQHEREGRWWWEDAKAKECGLHKGNIKQEDAAVNG 230
           L+  G+ S+G    T P             +  + WE     +            A  + 
Sbjct: 219 LYRYGFTSLGNVEETLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDL 278

Query: 231 NGNGAGNASEAVA 243
                 +      
Sbjct: 279 VKIENLHEDYYPG 291

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 133

 Score = 81.6 bits (202), Expect = 4e-19
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPT 329
             L+  YAPWC  C+ +E  Y  L  K  G   + + K   D    +    + ++  FPT
Sbjct: 27  DVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKM--DATANDITNDQYKVEGFPT 84

Query: 330 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 358
           I F P      PIK+    RD++ L  F+D
Sbjct: 85  IYFAPSGDKKNPIKFEGGNRDLEHLSKFID 114

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 79.0 bits (195), Expect = 3e-18
 Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 7/125 (5%)

Query: 234 GAGNASEAVADIFNSQ-NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYV 292
           G+  +S AV+ +++S  +++ L  +              WLV  YAPWC  CQ +   + 
Sbjct: 1   GSSGSSGAVSGLYSSSDDVIELTPSNFNREVIQSD--GLWLVEFYAPWCGHCQRLTPEWK 58

Query: 293 ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 352
           + A  L    VKVG   AD  Q    +  +Q   FPTI  F  + +KP  Y    R  ++
Sbjct: 59  KAATALKDV-VKVGAVNADKHQSLGGQYGVQ--GFPTIKIFGANKNKPEDYQGG-RTGEA 114

Query: 353 LMAFV 357
           ++   
Sbjct: 115 IVDAA 119

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} Length = 127

 Score = 78.2 bits (193), Expect = 6e-18
 Identities = 14/92 (15%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGN----GVKVGKFRADGDQKEYAKQKLQLGS 326
              V+ Y PW +   A    + +L+   +           +   +       + ++    
Sbjct: 35  DVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVS--G 92

Query: 327 FPTILFFPK-HSSKPIKYPSERRDVDSLMAFV 357
           FPT+ ++ +    +P +Y  + R +  + +FV
Sbjct: 93  FPTMRYYTRIDKQEPFEYSGQ-RYLSLVDSFV 123

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A Length = 121

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 11/93 (11%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAKQKLQLGS 326
             L+  YAPWC  C+A+   Y EL    A +     V + K  A  +         ++  
Sbjct: 27  DVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPD-----EIQG 81

Query: 327 FPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 358
           FPTI  +P     +P+ Y    R V+ L+ F+ 
Sbjct: 82  FPTIKLYPAGAKGQPVTYSGS-RTVEDLIKFIA 113

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus} Length = 140

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 235 AGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVEL 294
           +G++ +   ++     +  LN     N       ++  L+  YAPWC  C+     Y ++
Sbjct: 3   SGSSGDDDLEVKEENGVWVLND---GNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKI 59

Query: 295 ADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS 352
           A  L  N   + V K   D         K  +  +PTI    K   + + Y    R  + 
Sbjct: 60  ASTLKDNDPPIAVAKI--DATSASMLASKFDVSGYPTIKILKK--GQAVDYDGS-RTQEE 114

Query: 353 LMAFV 357
           ++A V
Sbjct: 115 IVAKV 119

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
           +  W++  YAPWC  CQ ++  +   A+      V + K           +  +   + P
Sbjct: 22  EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIIN--ALP 79

Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
           TI        +  +Y    R     + F+ 
Sbjct: 80  TIYHCKD--GEFRRYQGP-RTKKDFINFIS 106

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 78.3 bits (192), Expect = 7e-16
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 6/93 (6%)

Query: 266 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 325
              +EPWLV  +APW    +A+     + +  L G  +KVG    D    E       + 
Sbjct: 452 ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGT--LDCTIHEGLCNMYNIQ 508

Query: 326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
           ++PT + F +  S   +Y       + ++ F++
Sbjct: 509 AYPTTVVFNQ--SSIHEYEGH-HSAEQILEFIE 538

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
           +  W+V  YAPW    Q     +  LA  + G  V+ GK   D        QK  + ++P
Sbjct: 675 KTHWVVDFYAPWSGPSQNFAPEFELLARMIKGK-VRAGK--VDCQAYPQTCQKAGIKAYP 731

Query: 329 TILFFPKHSSKPIKYPSER--RDVDSLMAFVD 358
           ++  +    +K   +  +   RD  ++ A + 
Sbjct: 732 SVKLYQYERAKKSIWEEQINSRDAKTIAALIY 763

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)

Query: 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 309
           ++V+L  +    L +     E W+V  Y+PW    Q +   +  +A  L G  + VG   
Sbjct: 544 SVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL-INVGS-- 600

Query: 310 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER---RDVDSLMAFVD 358
            D  Q      +  +  +P I F+P+ SSK  +Y S     RD  SL ++  
Sbjct: 601 VDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGL 652

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 61.7 bits (149), Expect = 1e-10
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           E W V  Y+P       +  ++ E A ++ G  +++G      D+     + +   S+P+
Sbjct: 134 ELWFVNFYSPGSSHSHDLAPTWREFAKEVDGL-LRIGAVNCGDDRMLCRMKGVN--SYPS 190

Query: 330 ILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           +  F       +KY  + R  +SL+AF 
Sbjct: 191 LFIFRS-GMAAVKYNGD-RSKESLVAFA 216

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 77.2 bits (189), Expect = 9e-16
 Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 239 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 298
            EAVA       +V L     ++        +  L   +APWC  C+ M   YV+ A+ L
Sbjct: 6   QEAVAP--EDSAVVKLAT---DSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETL 60

Query: 299 AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPK-HSSKPIKYPSERRDVDSLMAFV 357
               + + +   D  + +    +  +  FP++  F     +  I Y    R  ++++ F+
Sbjct: 61  VEKNITLAQI--DCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGP-RTAEAIVQFM 117

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A Length = 504

 Score = 73.0 bits (178), Expect = 3e-14
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           +  LV+ YAPWC  C+ +  +Y ELAD  A     V   + D  + +     ++   +PT
Sbjct: 377 KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--GYPT 434

Query: 330 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 358
           I+ +P    S+ + Y    R +DSL  F+ 
Sbjct: 435 IVLYPGGKKSESVVYQGS-RSLDSLFDFIK 463

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A Length = 111

 Score = 71.2 bits (175), Expect = 1e-15
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 326
           +    +  YAPWC  C+ +  ++ EL+ K       VK+ +     ++   +K  ++   
Sbjct: 21  EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVR--G 78

Query: 327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           +PT+L F +   K  ++    RD+DSL  FV
Sbjct: 79  YPTLLLF-RGGKKVSEHSGG-RDLDSLHRFV 107

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 75.3 bits (184), Expect = 4e-15
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSF 327
            +  L+  YAPWC  C+ +E  Y EL +KL+ +  + + K   D    +      ++  F
Sbjct: 370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKM--DATANDVP-SPYEVRGF 426

Query: 328 PTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 358
           PTI F P      P KY    R++   ++++ 
Sbjct: 427 PTIYFSPANKKLNPKKYEGG-RELSDFISYLQ 457

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A Length = 481

 Score = 73.4 bits (179), Expect = 2e-14
 Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 5/109 (4%)

Query: 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 309
           +++ L     E+           LV  +APWC   + +   Y   A +L G  V + K  
Sbjct: 2   DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKV- 59

Query: 310 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
            D         K  +  +PT+  F +   +   Y    R  D +++ + 
Sbjct: 60  -DCTANTNTCNKYGVSGYPTLKIF-RDGEEAGAYDGP-RTADGIVSHLK 105

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2 Length = 120

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGSF 327
           +  LV  YAPWC  C+A+   Y + A KL   G  +++ K   D  ++    Q+  +  +
Sbjct: 25  KYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKV--DATEESDLAQQYGVRGY 82

Query: 328 PTILFFPK-HSSKPIKYPSERRDVDSLMAFV 357
           PTI FF    ++ P +Y +  R+ D ++ ++
Sbjct: 83  PTIKFFRNGDTASPKEYTAG-READDIVNWL 112

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 133

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG---VKVGKFRADGDQKEYAKQKLQLG 325
           ++ W+V  YAPWC  C+ +E  +   A ++       VK+    A    +  A  +  + 
Sbjct: 25  EDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDAT-VNQVLA-SRYGIR 82

Query: 326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
            FPTI  F K    P+ Y    R    +++  
Sbjct: 83  GFPTIKIFQK-GESPVDYDGG-RTRSDIVSRA 112

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 73.6 bits (180), Expect = 9e-15
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSF 327
           ++   V  YAPWC  C+ +   + +L +    +  + + K   D    E    K+   SF
Sbjct: 267 KKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKM--DSTANEVEAVKVH--SF 322

Query: 328 PTILFFPKHS-SKPIKYPSERRDVDSLMAFVD 358
           PT+ FFP  +    I Y  E R +D    F++
Sbjct: 323 PTLKFFPASADRTVIDYNGE-RTLDGFKKFLE 353

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 44.3 bits (104), Expect = 4e-05
 Identities = 8/92 (8%), Positives = 22/92 (23%), Gaps = 4/92 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGSFPT 329
             +++              ++   A+   G             +Q+      L+    P 
Sbjct: 137 THILLFLPKSVSDYDGKLSNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPA 196

Query: 330 ILFFP--KHSSKPIKYPSERRDVDSLMAFVDA 359
           +      +  +K      E    + +  F   
Sbjct: 197 VRLITLEEEMTKYKPESEE-LTAERITEFCHR 227

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 71.8 bits (176), Expect = 1e-14
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 239 SEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKL 298
           SE   ++     ++ LN     N       ++  L+  YAPWC  C+     Y ++A+ L
Sbjct: 5   SEDDLEVKEENGVLVLND---ANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANIL 61

Query: 299 AGNG--VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAF 356
                 + V K   D         +  +  +PTI    K   + + Y    R  + ++A 
Sbjct: 62  KDKDPPIPVAKI--DATSASVLASRFDVSGYPTIKILKK--GQAVDYEGS-RTQEEIVAK 116

Query: 357 V 357
           V
Sbjct: 117 V 117

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 66.4 bits (162), Expect = 9e-13
 Identities = 22/100 (22%), Positives = 43/100 (43%), Gaps = 7/100 (7%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEY 317
           EN   + +  +  LV  YAPWC  C+ +   Y + A +L+     + + K  A  +    
Sbjct: 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLA 197

Query: 318 AKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
            +  +    +PT+  F K   +P  Y    R+   ++ ++
Sbjct: 198 KRFDVS--GYPTLKIFRK--GRPYDYNGP-REKYGIVDYM 232

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens} Length = 382

 Score = 73.1 bits (179), Expect = 2e-14
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-----GNGVKVGKFRADGDQ 314
           EN+  + +  +  LV  YA WC+F Q +   + E +D +       N V   +   D   
Sbjct: 13  ENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCD-QH 71

Query: 315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
            + A Q+ ++  +PT+  F        +Y  + R V +L  ++
Sbjct: 72  SDIA-QRYRISKYPTLKLFRNGMMMKREYRGQ-RSVKALADYI 112

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 4/93 (4%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 326
           +  W V  +A WC  C A   ++  LA+ +      + +       +      +   +  
Sbjct: 30  RSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG 89

Query: 327 FPTILFF--PKHSSKPIKYPSERRDVDSLMAFV 357
           FPT+ FF     +     +P    DV +L   +
Sbjct: 90  FPTVRFFXAFTXNGSGAVFPVAGADVQTLRERL 122

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens} Length = 244

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 12/95 (12%), Positives = 29/95 (30%), Gaps = 10/95 (10%)

Query: 266 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 325
            + +E   ++         +       E+A  L+ +   V   R    +    + K  + 
Sbjct: 154 RNNEEYLALIFEXGGSYLAR-------EVALDLSQHK-GVAVRRVLNTEANVVR-KFGVT 204

Query: 326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
            FP+     + +    + P          A++  L
Sbjct: 205 DFPSCYLLFR-NGSVSRVPVLMESRSFYTAYLQRL 238

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus} Length = 122

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
           +  W+V  YAPWC  CQ     +  LA  + G  V+ GK        +   QK  + ++P
Sbjct: 21  KTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK-VRAGKVDCQ-AYPQTC-QKAGIKAYP 77

Query: 329 TILFFP---KHSSKPIKYPSERRDVDSLMAFVDA 359
           ++  +       S   +  +  RD  ++ A +  
Sbjct: 78  SVKLYQYERAKKSIWEEQINS-RDAKTIAALIYG 110

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A Length = 240

 Score = 66.2 bits (161), Expect = 1e-12
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNG------VKVGKFRADGDQKEYAKQKLQLG 325
            LV     +    +  E  +  LA+  A +       V +  +    + +   K KL   
Sbjct: 25  VLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKE 82

Query: 326 SFPTILFFPK-HSSKPIKYPSERRDVDSLMAFVD 358
           S+P    F       P+ Y      V ++  ++ 
Sbjct: 83  SYPVFYLFRDGDFENPVPYTGA-VKVGAIQRWLK 115

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A* Length = 519

 Score = 67.7 bits (164), Expect = 1e-12
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEYAKQKLQLGS 326
              W V  +A WC    A   ++ ELA+ +      + +       +      ++  +  
Sbjct: 30  SSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAG 89

Query: 327 FPTILFFPK--HSSKPIKYPSERRDVDSLMAFV 357
           FPT+ FF     +      P    +V +L   +
Sbjct: 90  FPTVRFFQAFTKNGSGATLPGAGANVQTLRMRL 122

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 65.5 bits (159), Expect = 3e-12
 Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 16/104 (15%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
               LV  YAPWC  C+ +  ++ + A +L G  V+V     D ++ +    K  +  FP
Sbjct: 35  NYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDLNKNKALCAKYDVNGFP 93

Query: 329 TILFFPKHSSKPIKYPSER---------------RDVDSLMAFV 357
           T++ F        K                    R +  ++ F 
Sbjct: 94  TLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFS 137

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae} Length = 298

 Score = 42.8 bits (100), Expect = 9e-05
 Identities = 5/87 (5%), Positives = 17/87 (19%), Gaps = 11/87 (12%)

Query: 272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTIL 331
                Y+   +  + +                            +             ++
Sbjct: 188 GKFDFYSISNKKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDK-----------SKLV 236

Query: 332 FFPKHSSKPIKYPSERRDVDSLMAFVD 358
            F     K  +Y     + + +  F+ 
Sbjct: 237 VFDADKDKFWEYEGNSINKNDISKFLR 263

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A* Length = 470

 Score = 62.7 bits (151), Expect = 5e-11
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 10/116 (8%)

Query: 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG------- 302
           ++V L+      + R      PW+V+ Y   C  C+    ++ + A  L           
Sbjct: 24  SVVDLSGDDFSRVHR-VAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQI 82

Query: 303 VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
                     +     K  +     P + FF    S           ++ +     
Sbjct: 83  ATAAAVNCASEVDLCRKYDIN--FVPRLFFFYPRDSCRSNEECGTSSLEHVAFENS 136

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A Length = 350

 Score = 60.1 bits (145), Expect = 3e-10
 Identities = 11/96 (11%), Positives = 27/96 (28%), Gaps = 12/96 (12%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLA-------GNGVKVGKFRADGDQKEYAKQK 321
           +   L + Y       +  +  +      L           +       D  ++    +K
Sbjct: 27  KYDVLCLYYHESVSSDKVAQKQFQLKEIVLELVAQVLEHKDIGFVM--VDAKKEAKLAKK 84

Query: 322 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           L      ++        + I++  E    D L+ F+
Sbjct: 85  LGFDEEGSLYVL--KGDRTIEFDGE-FAADVLVEFL 117

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A Length = 367

 Score = 59.2 bits (143), Expect = 5e-10
 Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 11/104 (10%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFC------QAMEGSYVELADKLAGNGVKVGKFRADGD 313
           +N   +  + E   ++ + P           +  E      A  L   GV  G    D +
Sbjct: 21  KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLV--DSE 78

Query: 314 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
           +     +KL L    +I  F +   + I+Y  E    D+L+ F+
Sbjct: 79  KDAAVAKKLGLTEEDSIYVFKED--EVIEYDGE-FSADTLVEFL 119

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2 Length = 325

 Score = 57.5 bits (138), Expect = 2e-09
 Identities = 46/210 (21%), Positives = 78/210 (37%), Gaps = 33/210 (15%)

Query: 4   ALEKFGNDIAIAFSGAED----VALIEYAHLTGR-PFRVFSLDTGRLNPETYRFFDEVEK 58
              +F N   + +S  +D    + L   A   G+ PF V  +DT     E YRF D++ +
Sbjct: 42  VAAEFDN-PVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVE 100

Query: 59  HFGIRIEYMF-PDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWIT 115
             G+ +     PD V        +G+  F   G  +   + K   L++AL   G  A   
Sbjct: 101 EMGLDLITHINPDGVA-------QGINPF-THGSAKHTDIMKTEGLKQALDKHGFDAAFG 152

Query: 116 GQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWN---------------PVANVKGN 160
           G R+D+   +R++  V          +        WN               P++N    
Sbjct: 153 GARRDEEK-SRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTEL 211

Query: 161 DIWNFLRTMDVPINSLHSQGYISIGCEPCT 190
           DIW ++    +PI  L+      +  +  T
Sbjct: 212 DIWQYIYLEGIPIVPLYFAAERDVIEKNGT 241

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 137

 Score = 50.6 bits (121), Expect = 5e-08
 Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK----QKLQLGS 326
            W+V  +A W   CQ+    Y +L+ K    G+  GK           +           
Sbjct: 28  TWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQ 87

Query: 327 FPTILFF 333
            PT++ F
Sbjct: 88  LPTLILF 94

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 225 DAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTG-MENLARLDHRQEPWLVVLYAPWCQF 283
           +  +  N  G   +       F   +      T          +  E W V  Y+P C  
Sbjct: 69  EKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGCSH 128

Query: 284 CQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKY 343
           C  +  ++ E A ++ G  +++G      D+     +   + S+P++  F       +KY
Sbjct: 129 CHDLAPTWREFAKEVDGL-LRIGAVNCGDDRM--LCRMKGVNSYPSLFIFRS-GMAAVKY 184

Query: 344 PSERRDVDSLMAFV 357
             + R  +SL+AF 
Sbjct: 185 NGD-RSKESLVAFA 197

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 49.4 bits (118), Expect = 8e-08
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           P +++     C +C  M+     ++ +  G    +   R + ++      K      PT 
Sbjct: 28  PTIIMFKTDTCPYCVEMQKELSYVSKEREGK-FNIYYARLEEEKNIDLAYKYDANIVPTT 86

Query: 331 LFFPK 335
           +F  K
Sbjct: 87  VFLDK 91

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 50.4 bits (120), Expect = 2e-07
 Identities = 15/106 (14%), Positives = 31/106 (29%), Gaps = 8/106 (7%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQK 315
           E   +         +   A  C+ CQ  E    E  + +        +K+  +     ++
Sbjct: 13  ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE 72

Query: 316 EYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 361
           E  K  +     PTI+         I+Y             ++ + 
Sbjct: 73  ETEKYGVD--RVPTIVIEGD-KDYGIRY-IGLPAGLEFTTLINGIF 114

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS-FPT 329
           P +V+++  WC  C+A++  + E  +    +   V     + +++   +     G   P 
Sbjct: 48  PLMVIIHKSWCGACKALKPKFAESTEISELSHNFV-MVNLEDEEEPKDEDFSPDGGYIPR 106

Query: 330 ILFF 333
           ILF 
Sbjct: 107 ILFL 110

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A Length = 248

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRAD----GDQKEYA-KQKLQLG 325
           +V               ++   +         + +           + K    + K+   
Sbjct: 37  VVKFDIASP--YGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDK 94

Query: 326 SFPTILFFPKHSSKPIKYPSER-RDVDSLMAFV 357
           +FP+I  F  ++ + ++ PS     +D+L AFV
Sbjct: 95  NFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFV 127

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYV----ELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 326
             +V  ++  C +CQ M  ++V     ++  L    V       D  + +   ++ ++  
Sbjct: 21  MVMVYFHSEHCPYCQQMN-TFVLSDPGVSRLLEARFVVA-SVSVDTPEGQELARRYRVPG 78

Query: 327 FPTILFFPK 335
            PT +F   
Sbjct: 79  TPTFVFLVP 87

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 5/79 (6%)

Query: 261 NLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKE 316
           N A ++ + +P ++ LYA WC  C+  E                  ++      D     
Sbjct: 23  NQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVA 82

Query: 317 YAKQKLQLGSFPTILFFPK 335
             K  L +   PTILFF  
Sbjct: 83  LLK-HLNVLGLPTILFFDG 100

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 258 GMENLARLDHRQE------PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD 311
           GM     ++            L+ +    C  C  M      + +    N V+  +    
Sbjct: 1   GMNTFKTIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENY--NYVEKIEILLQ 58

Query: 312 GDQKEYAKQKLQLGSFPTILFF 333
            D +E A  +  + + PT+L F
Sbjct: 59  -DMQEIA-GRYAVFTGPTVLLF 78

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           L+VL  +  W + C+A++  +  ++++ + + V      AD +  E + +  ++ + P  
Sbjct: 23  LIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDAD-ENSEIS-ELFEISAVPYF 80

Query: 331 LFF 333
           +  
Sbjct: 81  III 83

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis} Length = 121

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           +  ++  +A WC  C+ +   + +++D  AG+ V   K   D +Q + A Q++ + + PT
Sbjct: 34  KVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVD-EQSQIA-QEVGIRAMPT 91

Query: 330 ILFF 333
            +FF
Sbjct: 92  FVFF 95

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1 Length = 124

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
            VVL  +  WC  C+AM   Y +LA++     V   K   + + K  A ++L +   PT 
Sbjct: 39  PVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGIRVVPTF 95

Query: 331 LFF 333
              
Sbjct: 96  KIL 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 2e-05
 Identities = 55/376 (14%), Positives = 99/376 (26%), Gaps = 100/376 (26%)

Query: 5   LEKFGNDIAI---------AFSGAEDVALIEYAHLTGRPFRVFSLDTGRLNPET--YRFF 53
            + F ++              S  E   +I          R+F   T     E    +F 
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF--WTLLSKQEEMVQKFV 83

Query: 54  DEV-EKHFG-----IRIEYMFPDAV------EVQALVRSKGLFSFYEDGHQECCRVRKVR 101
           +EV   ++      I+ E   P  +      +   L     +F+ Y        R++   
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN-----VSRLQPYL 138

Query: 102 PLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND 161
            LR+AL  LR                  P   V  + +G+  G G   K     +V  + 
Sbjct: 139 KLRQALLELR------------------PAKNV--LIDGV-LGSG---KTWVALDVCLSY 174

Query: 162 IWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI 221
                  MD  I       ++++        VL      +   +  D        H  NI
Sbjct: 175 --KVQCKMDFKIF------WLNLKNCNSPETVLEML---QKLLYQIDPNWTSRSDHSSNI 223

Query: 222 KQEDAAVNGNGNGAGNASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC 281
           K              +    +  +  S+            L  L + Q          W 
Sbjct: 224 KLR----------IHSIQAELRRLLKSKPYE-------NCLLVLLNVQNAKA------WN 260

Query: 282 QF---CQAMEGS-YVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS 337
            F   C+ +  + + ++ D L+           D         ++        L      
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTT--HISLDHHSMTLTPDEV-KSLLLKYL-----D 312

Query: 338 SKPIKYPSERRDVDSL 353
            +P   P E    +  
Sbjct: 313 CRPQDLPREVLTTNPR 328

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1 Length = 85

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           + V  +P C +C        E   +     + V K     D+ E A  +  L + P I  
Sbjct: 5   IEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIMVDR-EKA-IEYGLMAVPAIAI 61

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A Length = 111

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
            VVL  +  WC   +AM   Y +LA++     V   K   + + K  A ++L +   PT 
Sbjct: 26  PVVLDMFTQWCGPSKAMAPKYEKLAEEYL--DVIFLKLDCNQENKTLA-KELGIRVVPTF 82

Query: 331 LFF 333
              
Sbjct: 83  KIL 85

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A Length = 106

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LVVL  +A WC  C+ +    VEL+ + A N V V K   D + ++ A  +  + S PT 
Sbjct: 22  LVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVD-ECEDIA-MEYNISSMPTF 78

Query: 331 LFF 333
           +F 
Sbjct: 79  VFL 81

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron} Length = 130

 Score = 41.7 bits (98), Expect = 4e-05
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 3/92 (3%)

Query: 271 PWLVVLYAPWCQFCQAMEGS--YVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
              V  +  WC  C+ +        L            K   +  +    ++K  + ++P
Sbjct: 29  LLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP 88

Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           T+LF    S + +       D   L+  V   
Sbjct: 89  TLLFI-NSSGEVVYRLVGAEDAPELLKKVKLG 119

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens} Length = 118

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 7/61 (11%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           ++ LY      C  +      LA K      K  K   +        Q       PTI  
Sbjct: 27  IIHLYRSSIPMCLLVNQHLSLLARKFP--ETKFVKAIVNS-----CIQHYHDNCLPTIFV 79

Query: 333 F 333
           +
Sbjct: 80  Y 80

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A Length = 112

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 5/63 (7%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
            +V+   A WC  C+ +   +  L++  AG  V   K   D D      +   + + PT 
Sbjct: 26  PIVVDFTATWCGPCKMIAPLFETLSNDYAGK-VIFLKV--DVDAVAAVAEAAGITAMPTF 82

Query: 331 LFF 333
             +
Sbjct: 83  HVY 85

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A Length = 142

 Score = 40.9 bits (96), Expect = 9e-05
 Identities = 12/61 (19%), Positives = 18/61 (29%), Gaps = 2/61 (3%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           L+                  EL  +      +V    AD +Q E    +  +  FP  L 
Sbjct: 40  LLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAV--ADLEQSEAIGDRFNVRRFPATLV 97

Query: 333 F 333
           F
Sbjct: 98  F 98

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A* Length = 122

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LVV+   A WC  C+ M   + +LA K         K   D + K  A ++  + + PT 
Sbjct: 36  LVVIDFTASWCGPCRIMAPVFADLAKKFP--NAVFLKVDVD-ELKPIA-EQFSVEAMPTF 91

Query: 331 LFF 333
           LF 
Sbjct: 92  LFM 94

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A Length = 118

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LV++   A WC  C+ +   + E A K    G    K   D + K+ A +   + + PT 
Sbjct: 30  LVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVD-ELKDVA-EAYNVEAMPTF 85

Query: 331 LFF 333
           LF 
Sbjct: 86  LFI 88

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* Length = 287

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327
              P L   ++   Q C  +      LA +  G    + K   D  ++  A  +  L + 
Sbjct: 25  MTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILAKLDCD-AEQMIA-AQFGLRAI 81

Query: 328 PTILFF 333
           PT+  F
Sbjct: 82  PTVYLF 87

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 5/68 (7%)

Query: 270 EPWLVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF 327
              ++VL         C  ++    + +  L+     +     D     Y  Q   +   
Sbjct: 22  AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVD-QTAVYT-QYFDISYI 78

Query: 328 PTILFFPK 335
           P+ +FF  
Sbjct: 79  PSTVFFFN 86

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A Length = 153

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           L+V+  +APW   C  M     ELA +L    V   K  A+    E + +K ++ S PT 
Sbjct: 34  LLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAE-GVPEVS-EKYEISSVPTF 89

Query: 331 LFF 333
           LFF
Sbjct: 90  LFF 92

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1 Length = 85

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
             + +  +P C  C A +    E+A+++    V+V       +  + A  +  + + PTI
Sbjct: 4   VKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVMENP-QKA-MEYGIMAVPTI 60

Query: 331 LFF 333
           +  
Sbjct: 61  VIN 63

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LVV+  +A WC  C+ +   + EL++K         K   D   +E A +K  + + PT 
Sbjct: 35  LVVVDFFATWCGPCKTIAPLFKELSEK---YDAIFVKVDVD-KLEETA-RKYNISAMPTF 89

Query: 331 LFF 333
           +  
Sbjct: 90  IAI 92

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A Length = 110

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
               +V  +   C  C+ ME    +   +     V +    ++  + E   ++L     P
Sbjct: 19  LSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSE-ARPELM-KELGFERVP 74

Query: 329 TILFF 333
           T++F 
Sbjct: 75  TLVFI 79

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A Length = 141

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           P +V  YA WC  C+ +     EL+ + AG  + + K   D + +      +Q  S PTI
Sbjct: 53  PAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNVDKEPELARDFGIQ--SIPTI 109

Query: 331 LFFPK 335
            F P 
Sbjct: 110 WFVPM 114

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus} Length = 136

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           P +V  YA WC  C+ +     ELA +  G  + + K   +  ++E A     + S P+I
Sbjct: 40  PAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDTE-KEQELA-GAFGIRSIPSI 96

Query: 331 LFFPK 335
           LF P 
Sbjct: 97  LFIPM 101

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1 Length = 113

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           L+V+   A WC  C+ +   + ELA K     V   K   D + K  A ++  + + PT 
Sbjct: 28  LIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVD-ELKAVA-EEWNVEAMPTF 83

Query: 331 LFF 333
           +F 
Sbjct: 84  IFL 86

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa} Length = 130

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           +V++   A WC  C+ +   + E A K    G    K   D D+ +   +K  + + PT 
Sbjct: 38  VVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKV--DVDELKEVAEKYNVEAMPTF 93

Query: 331 LFF 333
           LF 
Sbjct: 94  LFI 96

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum} Length = 128

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
             ++  +A WCQ C        +L        + + K   D D+ E   +K  + S PTI
Sbjct: 44  VIVLYFFAKWCQACTMQSTEMDKLQKYYGKR-IYLLKV--DLDKNESLARKFSVKSLPTI 100

Query: 331 LFF 333
           +  
Sbjct: 101 ILL 103

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix} Length = 135

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 10/71 (14%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAG------NGVKVGKFRADGDQKEYAKQKL 322
           Q   ++ +Y+  C  C       ++ + ++         G  +G+   +         K 
Sbjct: 31  QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGE--RELSAARLEMNKA 88

Query: 323 QLGSFPTILFF 333
            +   PT++F+
Sbjct: 89  GVEGTPTLVFY 99

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1 Length = 124

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LVV+   A WC  C+ +   + +LA KL    V   K   D D+ +       + + PT 
Sbjct: 40  LVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKV--DTDELKSVASDWAIQAMPTF 95

Query: 331 LFF 333
           +F 
Sbjct: 96  MFL 98

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           L V+      C  C  +  ++  +++K         +       +  A     + + PT 
Sbjct: 23  LAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVH-QCQGTA-ATNNISATPTF 78

Query: 331 LFF 333
            FF
Sbjct: 79  QFF 81

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} Length = 111

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
             LV+     C  CQ +     EL      +         + ++K    Q+  L   P I
Sbjct: 24  ACLVMFSRKNCHVCQKVTPVLEELRLNYEES-FGFYYVDVE-EEKTLF-QRFSLKGVPQI 80

Query: 331 LFF 333
           L+F
Sbjct: 81  LYF 83

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           +P +V+ Y+P C +C+AME  + E A +   +    G+     +     K  +Q    PT
Sbjct: 25  KPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIATNPWTAEKYGVQ--GTPT 81

Query: 330 ILFF 333
             FF
Sbjct: 82  FKFF 85

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 38.0 bits (89), Expect = 5e-04
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           L+V+  +A WC  C+ +      LA ++    V+  K   D   +E A  K  + + PT 
Sbjct: 21  LIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVD-QNEEAA-AKYSVTAMPTF 76

Query: 331 LFF 333
           +F 
Sbjct: 77  VFI 79

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} Length = 109

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
             LV  +A WC  C   E  Y ++A+K  G     G+   D +QK     K  + + PT 
Sbjct: 23  LVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNVDENQK--IADKYSVLNIPTT 79

Query: 331 LFF 333
           L F
Sbjct: 80  LIF 82

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus} Length = 140

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
              LV  +APWC  C+ +     ELA   AG  +KV K   + D+      +  + S PT
Sbjct: 51  PLTLVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKV--NVDEHPGLAARYGVRSVPT 107

Query: 330 ILFF 333
           ++ F
Sbjct: 108 LVLF 111

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LVV+   A WC  C+ ++  +  L++K +   V   +   D D ++ A  + ++ S PT 
Sbjct: 22  LVVVDFSATWCGPCKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SESEVKSMPTF 77

Query: 331 LFF 333
            FF
Sbjct: 78  QFF 80

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 135

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 7/61 (11%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           ++ LY      C  +      LA K      K  K   +   + Y    L     PTI  
Sbjct: 34  VIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSCIEHYHDNCL-----PTIFV 86

Query: 333 F 333
           +
Sbjct: 87  Y 87

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis} Length = 118

 Score = 38.2 bits (89), Expect = 6e-04
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 307
           S  +V  N T    L R+       LV  +A WC  CQ +      +A+      V   K
Sbjct: 2   SDPIVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANK--DVTFIK 59

Query: 308 FRADGDQKEYAKQKLQLGSFPTILFF 333
              D D+   A     + S P + F 
Sbjct: 60  V--DVDKNGNAADAYGVSSIPALFFV 83

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 8/86 (9%), Positives = 26/86 (30%), Gaps = 1/86 (1%)

Query: 249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKF 308
            N+  L  T +        ++E     +    C +C+   G+   +  +   +   +   
Sbjct: 9   DNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINSE 68

Query: 309 RADGDQK-EYAKQKLQLGSFPTILFF 333
                   +  + +  + + P  +  
Sbjct: 69  EPSQLNDLQAFRSRYGIPTVPGFVHI 94

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNG----VKVGKFRADGDQKEYAK-QKLQLG 325
           P L+V  A WC  C+A++ S     +          VK+     D + +           
Sbjct: 31  PTLLVFGANWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQD 90

Query: 326 SFPTILFF 333
             P ++  
Sbjct: 91  GIPAVVVV 98

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 37.7 bits (88), Expect = 8e-04
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 273 LVVL--YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI 330
           LVV+   A WC   + ++  +  L++K +   V   +   D D ++ A  + ++ S PT 
Sbjct: 33  LVVVDFSATWCGPSKMIKPFFHSLSEKYS--NVIFLEVDVD-DCQDVA-SECEVKSMPTF 88

Query: 331 LFF 333
            FF
Sbjct: 89  QFF 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
2goy_A	275	Adenosine phosphosulfate reductase; iron sulfur cl	100.0
2oq2_A	261	Phosphoadenosine phosphosulfate reductase; sulfate	100.0
2o8v_A	252	Phosphoadenosine phosphosulfate reductase; disulfi	100.0
3fwk_A	308	FMN adenylyltransferase; FAD biosynthesis, alpha/b	100.0
1zun_A	325	Sulfate adenylyltransferase subunit 2; beta barrel	100.0
2wsi_A	306	FAD synthetase; transferase, nucleotidyltransferas	100.0
1sur_A	215	PAPS reductase; assimilatory sulfate reduction, 3-	100.0
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.88
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.87
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.85
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.85
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.84
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.83
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.83
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.83
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.82
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.82
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.82
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.82
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.81
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.81
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.81
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.81
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.81
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.81
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.8
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.8
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.8
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.8
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.8
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.8
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.8
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.8
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.8
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.8
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.8
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.8
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.8
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.79
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.79
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.79
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.79
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.79
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.79
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.79
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.79
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.78
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.78
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.78
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.78
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.78
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.78
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.77
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.77
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.77
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.77
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.77
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.77
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.77
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.76
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.76
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.76
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.76
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.76
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.76
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.76
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.76
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.76
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.76
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.75
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.75
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.75
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.75
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.75
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.75
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.75
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.74
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.74
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.74
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.74
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.74
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.74
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.73
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.73
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.73
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.73
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.73
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.73
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.73
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.72
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.72
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	99.7
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.7
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.68
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.67
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	99.67
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.67
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.67
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.49
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.67
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.66
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.66
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.66
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	99.66
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.64
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.64
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.64
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.63
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.62
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.62
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.61
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.61
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.61
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.57
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.56
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.55
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.31
1wy5_A	317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	99.54
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.53
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.52
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.52
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.52
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.51
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.51
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.51
2ywb_A	503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.51
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.51
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.51
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.5
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.5
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.49
2dpl_A	308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	99.49
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.48
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.48
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.47
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.46
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.46
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.46
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.45
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.42
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.42
3k32_A	203	Uncharacterized protein MJ0690; predicted subunit	99.42
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.42
3bl5_A	219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	99.42
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.42
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.42
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.41
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.4
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.4
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.4
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.4
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.39
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.39
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.38
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.37
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.36
1ni5_A	433	Putative cell cycle protein MESJ; structural genom	99.36
1kor_A	400	Argininosuccinate synthetase; ligase, riken struct	99.36
3a2k_A	464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	99.36
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.35
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.34
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.34
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.33
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.33
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.32
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.32
2hma_A	376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	99.32
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.32
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.31
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.3
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.29
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.29
2pg3_A	232	Queuosine biosynthesis protein QUEC; YP_049261.1,	99.28
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.26
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.26
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.26
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.26
2der_A	380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	99.22
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.2
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.19
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.19
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.19
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	98.81
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	98.81
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	99.15
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.15
3p52_A	249	NH(3)-dependent NAD(+) synthetase; structural geno	99.14
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.13
1xng_A	268	NH(3)-dependent NAD(+) synthetase; amidotransferas	99.12
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	99.11
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.1
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.09
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.09
3tqi_A	527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.09
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.08
3fiu_A	249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	99.08
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.07
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.06
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.06
2e18_A	257	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.05
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.03
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.03
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.02
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.02
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.02
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.02
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.02
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.01
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.0
2c5s_A	413	THII, probable thiamine biosynthesis protein THII;	99.0
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.98
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.98
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	98.94
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.91
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.91
1gpm_A	525	GMP synthetase, XMP aminase; class I glutamine ami	98.9
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.9
1k92_A	455	Argininosuccinate synthase, argininosuccinate SY;	98.89
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	98.88
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	98.88
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	98.88
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	98.85
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	98.85
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	98.82
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	98.82
2nz2_A	413	Argininosuccinate synthase; amino-acid biosynthesi	98.81
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.77
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.76
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.76
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.73
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.72
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	98.71
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.7
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	98.65
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	98.65
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	98.64
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	98.64
1vl2_A	421	Argininosuccinate synthase; TM1780, structural gen	98.64
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.62
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	98.62
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	98.61
3uow_A	556	GMP synthetase; structural genomics consortium, SG	98.61
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.58
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.56
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	98.56
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	98.55
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	98.53
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.5
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.49
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.49
3me7_A	170	Putative uncharacterized protein; electron transfe	98.46
2vxo_A	697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	98.46
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	98.45
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	98.44
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	98.43
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	98.37
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	98.36
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	98.33
1kte_A	105	Thioltransferase; redox-active center, electron tr	98.32
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	98.32
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	98.31
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	98.29
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	98.29
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	98.28
1kqp_A	271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	98.26
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.26
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	98.26
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	98.25
3n05_A	590	NH(3)-dependent NAD(+) synthetase; ligase, structu	98.24
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	98.23
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	98.22
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	98.22
3q4g_A	279	NH(3)-dependent NAD(+) synthetase; structural geno	98.17
3bj5_A	147	Protein disulfide-isomerase; thioredoxin fold, cha	98.17
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	98.15
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.13
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.12
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.12
1wxi_A	275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	98.12
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	98.11
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	98.1
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	98.09
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.09
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	98.08
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	98.08
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.07
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	98.07
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	98.06
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	98.06
3dpi_A	285	NAD+ synthetase; ssgcid, decode, structural genomi	98.03
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	98.02
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	98.02
3rjz_A	237	N-type ATP pyrophosphatase superfamily; structural	98.01
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.98
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.97
1vbk_A	307	Hypothetical protein PH1313; structural genomics,	97.97
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	97.94
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	97.94
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.94
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.9
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	97.88
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.88
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.88
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.87
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	97.82
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	97.74
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	97.62
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	97.59
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	97.59
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	97.58
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.55
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.51
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	97.51
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	97.47
3sdb_A	680	Glutamine-dependent NAD(+) synthetase; glutamine-a	97.42
3ilv_A	634	Glutamine-dependent NAD(+) synthetase; protein str	97.41
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	97.37
3ec3_A	250	Protein disulfide-isomerase A4; thioredoxin-like f	97.32
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.3
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	97.01
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	96.89
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	96.87
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	96.85
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	96.82
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	96.71
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	96.56
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	96.53
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	96.53
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	96.52
1jgt_A	513	Beta-lactam synthetase; asparagine synthetase, cla	96.43
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	96.42
1ct9_A	553	Asparagine synthetase B; amidotransferase, substra	96.39
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	96.34
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	96.34
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	96.29
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	96.22
1q15_A	503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	95.97
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	95.94
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	95.74
4f4h_A	565	Glutamine dependent NAD+ synthetase; structural ge	95.57
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	95.46
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	94.96
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	94.86
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	94.17
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	93.76
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	91.99
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	91.64
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	90.55
1t4y_A	105	Adaptive-response sensory-kinase SASA; alpha/beta	90.42
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	90.27
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	90.23
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	90.08
2in3_A	216	Hypothetical protein; DSBA family, FRNE-like subfa	88.55
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	87.93
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	87.63
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	86.6
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	85.02
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	84.1
3l78_A	120	Regulatory protein SPX; transcription, transcripti	80.79

>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.1e-56  Score=403.76  Aligned_cols=216  Identities=54%  Similarity=1.096  Sum_probs=181.0

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      |++++++|+++++|+|| ||||++| ||+.+.++++.++|+|||.+||||++|+++++++||++++++.|+...+.++..
T Consensus        46 l~~a~~~~g~~i~Va~S-GkDS~vLL~Ll~~~~~~i~vv~iDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~~~~~~~~  124 (275)
T 2goy_A           46 LKAAFEHFGDELWISFS-GAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVK  124 (275)
T ss_dssp             HHHHHHHHSTTEEEECC-SSTTHHHHHHHHHHCTTCCEEEECCSCCCHHHHHHHHHHHHHHTCCCEEECCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEee-cHHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHCCeEEEEeCCccCHHHHHH
Confidence            57899999889999999 9999877 999999999999999999999999999999999999999999998644555566


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCC-ccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCc
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQS-PGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVK  158 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es-~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~  158 (361)
                      ..|.+.++..++++||.++|++|++++++++++|++|+|++|+ . .|..+++++.+..+..   ..++..+++||++|+
T Consensus       125 ~~g~~~~~~~~~~~cc~~~K~~pl~r~l~~~~~~itG~r~dds~~-~R~~~~~~~~d~~~~~---~~~g~~~i~PL~~wt  200 (275)
T 2goy_A          125 EKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPG-TRSQVAVLEIDGAFST---PEKPLYKFNPLSSMT  200 (275)
T ss_dssp             HHCSCHHHHHCTHHHHHHHTHHHHHHHHHTCSEEECCCCGGGTTS-CSCCCCSEEECTTTCC---SSSCCEEECTTTTCC
T ss_pred             HhCCCCccccCHHHHHHHHHHHHHHHHHHhcCchhcCchhhhhhh-hhhhCccccccccccc---CCCCeEEEechHhCC
Confidence            6666555555678999999999999999999999999999999 5 8999999988753320   124678999999999


Q ss_pred             HHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCC
Q 018045          159 GNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI  221 (361)
Q Consensus       159 ~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i  221 (361)
                      ++|||+|+++++|||||||++||+|+||++||.++.+|+++|+|||||++..|+|||||..++
T Consensus       201 ~~dV~~Yi~~~~lp~~~Ly~~Gy~siGC~~Ct~~~~~g~~~R~gRw~w~~~~k~ecGlh~~~~  263 (275)
T 2goy_A          201 SEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWEEATHKECGLHAGNL  263 (275)
T ss_dssp             HHHHHHHHHHTTCCCCGGGGGTCSSCCCGGGBCCCCTTCCGGGGBSTTC--------------
T ss_pred             HHHHHHHHHHhCCCCChHHHcCCCCCCCccCCCCCCCCCccccCccccCCCCCccCCCCcCcc
Confidence            999999999999999999999999999999999999999999999999999999999997654

>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-53  Score=381.06  Aligned_cols=206  Identities=27%  Similarity=0.436  Sum_probs=176.8

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCC---CceEEEccCCCCcHHHHHHHHHHHHHhCC----cEEEEcCChH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGR---PFRVFSLDTGRLNPETYRFFDEVEKHFGI----RIEYMFPDAV   72 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~---~i~v~~~dtg~~~pet~~~v~~~~~~~g~----~i~~~~p~~~   72 (361)
                      |+|++++|+ +++|+|||||||++| ||+.+..+   +++++|+|||.+||||++|+++++++||+    +++++.|+..
T Consensus        34 l~~a~~~~~-~v~va~SGGkDS~vLL~ll~~~~~~~~~i~vv~iDtg~~~~et~~~v~~~~~~~gl~~~~~l~v~~~~~~  112 (261)
T 2oq2_A           34 IAWSIVTFP-HLFQTTAFGLTGLVTIDMLSKLSEKYYMPELLFIDTLHHFPQTLTLKNEIEKKYYQPKNQTIHVYKPDGC  112 (261)
T ss_dssp             HHHHHHHCS-SEEEECCCCHHHHHHHHHHHHHTTTSCCCEEEEECCSCBCHHHHHHHHHHHHHHTGGGTCCCEEECSTTC
T ss_pred             HHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhCccCCCeeEEEecCCCCCHHHHHHHHHHHHHhCCCCCCCeEEEecCCc
Confidence            578899995 899999999999877 99999876   89999999999999999999999999999    9999998741


Q ss_pred             -HHHHHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeE
Q 018045           73 -EVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLV  149 (361)
Q Consensus        73 -~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~  149 (361)
                       ....+....|.. .+..++.+||..+|++|++++++  +.++|++|+|++|+. .|..++.+++++.        ++.+
T Consensus       113 ~~~~~~~~~~G~~-~~~~~~~~cc~~~K~~pl~~~l~~~g~~~~~tG~R~dds~-~R~~~~~~~~~~~--------~~~~  182 (261)
T 2oq2_A          113 ESEADFASKYGDF-LWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGS-ARSQLSIIEIDEL--------NGIL  182 (261)
T ss_dssp             SSHHHHHHHHCTT-HHHHCHHHHHHHHTHHHHHHHHHHTTCSEEECCCCGGGCG-GGGGCCSEEEETT--------TTEE
T ss_pred             cCHHHHHHHhCCC-ccccChHHHHHHHhHHHHHHHHHHcCCCEEEEeccccchH-HHccCCceeecCC--------CCeE
Confidence             133444545542 23345689999999999999999  567999999999996 9999998887642        4688


Q ss_pred             EEeeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCC
Q 018045          150 KWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKG  219 (361)
Q Consensus       150 ~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~  219 (361)
                      +++||++||++|||+|++.++|||||||++||+|+||++||.++.+|+++|+|||  .+..|+|||||..
T Consensus       183 ki~PL~~wt~~dV~~Yi~~~~lp~~pLy~~Gy~siGC~~ct~~~~~~~~eR~gRw--~~~~k~ecGlh~~  250 (261)
T 2oq2_A          183 KINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW--KGKAKTECGIHEA  250 (261)
T ss_dssp             EECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCSSCCBGGGCCCCCTTSCTTTTTC-------CCCTTTCC
T ss_pred             EEechHhCCHHHHHHHHHHcCCCCCchhhCCCCCCCCcCCCCcCCCCCCcccccc--CCCCCcccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999997  6778999999964

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=100.00  E-value=5.4e-52  Score=370.43  Aligned_cols=205  Identities=28%  Similarity=0.477  Sum_probs=165.1

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      |+|++++|+++++|+|||||||++| ||+.+..+++.++|+|||.+||||++|+++++++||++++++.|+.. ...+..
T Consensus        37 l~~a~~~~~~~v~va~SGG~DS~vLL~ll~~~~~~v~vv~idtg~~~~et~~~~~~~~~~~gi~~~v~~~~~~-~~~~~~  115 (252)
T 2o8v_A           37 VAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQEA  115 (252)
T ss_dssp             HHHHHTTSCSCEEEECCCSTTHHHHHHHHHHHSTTCEEEECCCSCBCHHHHHHHHHHHHHTTCEEEECCCSSC-HHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHhCCCCeEEEecCCCCCHHHHHHHHHHHHHhCCceEEEcCCCC-HHHHHH
Confidence            4788999988999999999999877 99999989999999999999999999999999999999999988864 334445


Q ss_pred             hcCCCCCCc--cchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           80 SKGLFSFYE--DGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        80 ~~~~~~~~~--~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      ..| ..+..  ..+.+||..+|+.|+++++++.  ++|++|+|++|+. .|..++.++..          ++..+++||+
T Consensus       116 ~~g-~~~~~~~~~~~~cc~~~K~~pl~~~l~~~~~~~~~tG~r~dds~-~R~~l~~~~~~----------~~~~~i~PL~  183 (252)
T 2o8v_A          116 RYG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ----------RGVFKVLPII  183 (252)
T ss_dssp             HTC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTCSEEEECCCSTTTT-CCTTSCSEEES----------SSSEEECGGG
T ss_pred             HcC-CccccCCchHHHHHHHHHHHHHHHHHHhcCCcEEEEeccccccc-ccccCceeecC----------CCeEEEechh
Confidence            555 22222  1347899999999999999865  4699999999996 99999887532          2567999999


Q ss_pred             cCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCcccccCCCCCC
Q 018045          156 NVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLPGQHEREGRWWWEDAKAKECGLHKGNI  221 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~~~~~~~gr~~~~~~~~~~~g~~~~~i  221 (361)
                      +|+.+|||+|+++++||+||||++||+|+||++||.++.+|+++|+|||  .+ .|+|||||....
T Consensus       184 ~wt~~dV~~y~~~~~lp~~~Ly~~Gy~siGC~~Ct~~~~~g~~~r~gRw--~~-~k~ecglh~~~~  246 (252)
T 2o8v_A          184 DWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRF--FG-LKRECGLHEGLE  246 (252)
T ss_dssp             SCCHHHHHHHHHHTTCCCCTTTTTTCSSCCBCTTTCC-----------------CCSCCCSCCC--
T ss_pred             hCCHHHHHHHHHHcCCCCChHHhCCCCCCCCcCcCCcCCCCCCcccccc--CC-CCccCCCCCCcc
Confidence            9999999999999999999999999999999999999999999999997  45 889999997643

>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*

Probab=100.00  E-value=1.4e-44  Score=323.19  Aligned_cols=165  Identities=18%  Similarity=0.270  Sum_probs=141.0

Q ss_pred             CHHHHhHhC---CcEEEEecchHHHHHH-HHHHHc----------------------CCCceEEEccCCCCcHHHHHHHH
Q 018045            1 MDRALEKFG---NDIAIAFSGAEDVALI-EYAHLT----------------------GRPFRVFSLDTGRLNPETYRFFD   54 (361)
Q Consensus         1 i~~~~~~~~---~~i~vs~SGGKDS~~l-~l~~~~----------------------~~~i~v~~~dtg~~~pet~~~v~   54 (361)
                      |++++++|+   +++++||||||||+|| ||+.+.                      .++++|+|+|||++||||++|++
T Consensus        47 Lrea~~~f~~~~~~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~FpET~ef~d  126 (308)
T 3fwk_A           47 INETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIE  126 (308)
T ss_dssp             HHHTTTTSCSSSSSEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCHHHHHHHH
T ss_pred             HHHHHHHcccccCCEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCHHHHHHHH
Confidence            468889997   6899999999999876 998774                      15799999999999999999999


Q ss_pred             HHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceec
Q 018045           55 EVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQV  134 (361)
Q Consensus        55 ~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~  134 (361)
                      +++++||++++++.|+....               -...||..+|++|      +.++||+|+|++| + .|++++.++.
T Consensus       127 ~~~~~ygL~L~v~~p~~~~~---------------~~~~cc~~~K~~P------~~~AwitG~RR~e-~-~Ra~l~~~e~  183 (308)
T 3fwk_A          127 ETSLRYSLSLYESDRDKCET---------------MAEAFETFLQVFP------ETKAIVIGIRHTD-P-FGEHLKPIQK  183 (308)
T ss_dssp             HHHHHTTEEEEECCTTSCCC---------------HHHHHHHHHHHCT------TCCEEECCCCTTS-T-TCTTCCSEEE
T ss_pred             HHHHHhCCcEEEeCCCCCHH---------------HHHHHHHHHHhCC------CCCEEEEEeecCC-c-ccCCCCeeec
Confidence            99999999999998863210               1257999999988      5889999999996 5 8999998886


Q ss_pred             CCCCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCC
Q 018045          135 DPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVL  194 (361)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~  194 (361)
                      +..      .+++.++++||++||+.|||.||+.++|||||||++||+||||++||+|..
T Consensus       184 ~d~------~w~~~iKVnPL~dWT~~DVW~YI~~~~LPynpLYd~GY~SIGC~~CT~pnp  237 (308)
T 3fwk_A          184 TDA------NWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNP  237 (308)
T ss_dssp             CCT------TSCSCEEECTTTTCCHHHHHHHHHHHTCCCCGGGGGTCSSCCCTTTBCCCG
T ss_pred             cCC------CCCCeEEEechhhCCHHHHHHHHHHcCCCCCcHHhcCCCCCCCCccCCCCh
Confidence            521      235789999999999999999999999999999999999999999999763

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2

Probab=100.00  E-value=1.9e-41  Score=311.44  Aligned_cols=194  Identities=26%  Similarity=0.435  Sum_probs=132.4

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ   75 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~   75 (361)
                      |++++++| ++++|+|||||||++| ||+.+.    +++++++|+|||.+||||++|+++++++||++++++.++..   
T Consensus        39 lr~~~~~~-~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~~~~et~~~v~~~~~~~gi~l~v~~~~~~---  114 (325)
T 1zun_A           39 IREVAAEF-DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDG---  114 (325)
T ss_dssp             HHHHHHHC-SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC------
T ss_pred             HHHHHHhC-CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCchH---
Confidence            46788888 5999999999999877 998886    56899999999999999999999999999999999987643   


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCcee-------cCCCCc-------
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQ-------VDPVFE-------  139 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~-------~~~~~~-------  139 (361)
                         ...|.+. +..++++||..+|+.|++++++  ++++|++|+|+||+. .|+.+++++       ++++..       
T Consensus       115 ---~~~G~~~-~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~Des~-~Ra~~~~~~~r~~~~~~d~~~~rp~l~~~  189 (325)
T 1zun_A          115 ---VAQGINP-FTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK-SRAKERVYSFRDSKHRWDPKNQRPELWNV  189 (325)
T ss_dssp             ---------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG-GGGGCCSEEEECTTCCBCGGGCCCCCSSC
T ss_pred             ---HhcCCCc-cccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhh-hhhcccceeccccccccCccccCcchhhh
Confidence               1123322 2235668999999999999998  688999999999996 999888876       332110       


Q ss_pred             --CCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccc-------------------cCC------------------
Q 018045          140 --GLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH-------------------SQG------------------  180 (361)
Q Consensus       140 --~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY-------------------~~g------------------  180 (361)
                        .+ ...++.++++||++|+++|||+|++.++||+||||                   ++|                  
T Consensus       190 ~n~~-~~~g~~~~i~PLl~wt~~dIw~Yi~~~~lp~~~LY~~~~r~~~~r~g~~~~~~~~~g~~~~~~~~~~~~~~~~~r  268 (325)
T 1zun_A          190 YNGN-VNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAAERDVIEKNGTLIMIDDERILEHLTDEEKSRIVKKKVR  268 (325)
T ss_dssp             CCCC-CCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCCSCC-------------------------------------
T ss_pred             cccc-ccCCCeEEEEchhhCCHHHHHHHHHHhCCCcchhhhcccccccccCCceeccchhhcccccCCCccccccccccc
Confidence              00 01124788999999999999999999999999999                   689                  


Q ss_pred             CCCCCCCCCCCCCCCCC---------------CCcCCCC
Q 018045          181 YISIGCEPCTRPVLPGQ---------------HEREGRW  204 (361)
Q Consensus       181 ~~~~GC~~Ct~~~~~~~---------------~~~~gr~  204 (361)
                      |+||||++||.++.+++               .||.|||
T Consensus       269 y~siGc~~cT~~v~~~~~~~~~~~~~~~~~~~~er~~R~  307 (325)
T 1zun_A          269 FRTLGCYPLTGAVESEATSLTDIIQEMLLTRTSERQGRV  307 (325)
T ss_dssp             ---------------------------------------
T ss_pred             cCCcCCcccCCccCCCCccHHHHHHHHHhcCCCcccccc
Confidence            99999999999998763               5788886

>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-39  Score=295.78  Aligned_cols=180  Identities=17%  Similarity=0.270  Sum_probs=139.5

Q ss_pred             HHHHhHhC---CcEEEEecchHHHHHH-HHHHHc----------------------CCCceEEEccCCCCcHHHHHHHHH
Q 018045            2 DRALEKFG---NDIAIAFSGAEDVALI-EYAHLT----------------------GRPFRVFSLDTGRLNPETYRFFDE   55 (361)
Q Consensus         2 ~~~~~~~~---~~i~vs~SGGKDS~~l-~l~~~~----------------------~~~i~v~~~dtg~~~pet~~~v~~   55 (361)
                      ++++++|+   ++++|||||||||+|| ||+.+.                      +++++++|+|||.+||||++|+++
T Consensus        43 ~~~~~~~~~~~~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~fpet~~fv~~  122 (306)
T 2wsi_A           43 SEIFVRWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETFPTLENFVLE  122 (306)
T ss_dssp             HTTTTTSCSSSSSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCCHHHHHHHHH
T ss_pred             HHHHHHcccccCCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCCHHHHHHHHH
Confidence            45667776   5899999999999877 888764                      467999999999999999999999


Q ss_pred             HHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecC
Q 018045           56 VEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVD  135 (361)
Q Consensus        56 ~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~  135 (361)
                      ++++||++++++.++...      ..   .+    ...+...+|..|      ..+++++|+|++|+. .|+...+...+
T Consensus       123 ~~~~ygl~l~v~~~~~~~------~~---~l----~~~~~~~~k~~p------~~~aii~G~Rrdds~-~r~l~~~~~~d  182 (306)
T 2wsi_A          123 TSERYCLSLYESQRQSGA------SV---NM----ADAFRDFIKIYP------ETEAIVIGIRHTDPF-GEALKPIQRTD  182 (306)
T ss_dssp             HHHHTTEEEEECCC-----------C---CH----HHHHHHHHHHCT------TCCEEECCCCCCSSS-CCCCCSEEECC
T ss_pred             HHHHcCCCEEEEeCCccc------cc---cH----HHHHHHHHhhCC------CCcEEEEEEeccccc-ccccCceeccC
Confidence            999999999998776320      00   00    011222234333      356899999999995 77665543333


Q ss_pred             CCCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccCCCCCCCCCCCCCCCCC---CCCCcCCCCCCCC
Q 018045          136 PVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQGYISIGCEPCTRPVLP---GQHEREGRWWWED  208 (361)
Q Consensus       136 ~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~Ct~~~~~---~~~~~~gr~~~~~  208 (361)
                      .       +++++++++||++|+++|||.||+.++|||||||++||+||||++||.|...   +.+.+.+||||+-
T Consensus       183 ~-------~~p~~~ri~PL~dWt~~DVw~Yi~~~~lpy~pLYd~GY~SiGc~~cT~pnp~l~~~~~~~~~~~~we~  251 (306)
T 2wsi_A          183 S-------NWPDFMRLQPLLHWDLTNIWSFLLYSNEPICGLYGKGFTSIGGINNSLPNPHLRKDSNNPALHFEWEI  251 (306)
T ss_dssp             T-------TSCSCEEECTTTTCCHHHHHHHHHHHCCCBCHHHHTTCSSCCCTTTBCSCGGGBGGGCCCCCSCHHHH
T ss_pred             C-------CCCCcEEEeChHHCCHHHHHHHHHHcCCCCChhHhcCCCcCCcccCCCcCHHHhcccccccccccccc
Confidence            2       3356899999999999999999999999999999999999999999987643   3456788999974

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2

Probab=100.00  E-value=5.1e-38  Score=274.21  Aligned_cols=175  Identities=25%  Similarity=0.445  Sum_probs=149.3

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      |+++++.|+++++|+|||||||++| ||+.+.+.++.++|+|||.++|++++|+++++++||++++++.++.. ......
T Consensus        36 l~~~~~~~~~~v~Va~SGGkDS~vLL~ll~~~~~~v~~v~vd~g~~~~e~~~~v~~~~~~~gi~~~v~~~~~~-~~~~~~  114 (215)
T 1sur_A           36 VAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATES-AAWQEA  114 (215)
T ss_dssp             HHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSC-HHHHHH
T ss_pred             HHHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCCeEEEeeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCCC-HHHHHH
Confidence            4688899988999999999999877 99999889999999999999999999999999999999999988753 233344


Q ss_pred             hcCCCCCCc--cchhchhhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           80 SKGLFSFYE--DGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        80 ~~~~~~~~~--~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      ..| ..+..  ...++||..+|..|+++++++..  ++++|+|++|+. .|..++.++..          ++...++||+
T Consensus       115 ~~g-~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~~~i~~G~r~dd~~-~r~~~~~~~~~----------~~~~~i~PLl  182 (215)
T 1sur_A          115 RYG-KLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ----------RGVFKVLPII  182 (215)
T ss_dssp             HHC-CGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSS-TTTTCCSEEEE----------TTEEEECTTT
T ss_pred             hcC-CCCCCCccHHHHHHHHHHHHHHHHHHHhcCCceEEEEeehhhhh-hhcCCCccccC----------CCEEEEechH
Confidence            444 21111  13478999999999999998664  799999999996 89888776532          2567899999


Q ss_pred             cCcHHHHHHHHHhCCCCCCccccCCCCCCCCCC
Q 018045          156 NVKGNDIWNFLRTMDVPINSLHSQGYISIGCEP  188 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~  188 (361)
                      +|+++|||+|++.++||+||||++||+|+||+|
T Consensus       183 ~~t~~dI~~y~~~~~lp~~~lY~~Gy~siGC~p  215 (215)
T 1sur_A          183 DWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTH  215 (215)
T ss_dssp             TCCHHHHHHHHHHHTCCCCGGGGGTCSCCCBCC
T ss_pred             hCCHHHHHHHHHHhCCCCChHHhCCCCCCCCCC
Confidence            999999999999999999999999999999986

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.88  E-value=4e-22  Score=153.18  Aligned_cols=103  Identities=19%  Similarity=0.377  Sum_probs=88.3

Q ss_pred             ceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |.++ +.++|++.+. ...+++++|+|||+||++|+.+.|.++++++.+++  +.|++||++++ ++++ ++|+|+++||
T Consensus         2 V~~i~~~~~f~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~~-~~l~-~~~~V~~~PT   76 (105)
T 3zzx_A            2 VYQVKDQEDFTKQLN-EAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD--VVFLKVDVDEC-EDIA-QDNQIACMPT   76 (105)
T ss_dssp             CEECCSHHHHHHHHH-HTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEETTTC-HHHH-HHTTCCBSSE
T ss_pred             eEEeCCHHHHHHHHH-hcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC--eEEEEEecccC-HHHH-HHcCCCeecE
Confidence            4556 4578998875 23578999999999999999999999999999865  99999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      +++|++|+. ...+.|  .+.++|.++|++.+
T Consensus        77 ~~~~~~G~~-v~~~~G--~~~~~l~~~i~k~K  105 (105)
T 3zzx_A           77 FLFMKNGQK-LDSLSG--ANYDKLLELVEKNK  105 (105)
T ss_dssp             EEEEETTEE-EEEEES--CCHHHHHHHHHHHC
T ss_pred             EEEEECCEE-EEEEeC--cCHHHHHHHHHhcC
Confidence            999999984 334444  68999999999864

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.87  E-value=2.5e-21  Score=154.11  Aligned_cols=109  Identities=15%  Similarity=0.359  Sum_probs=96.6

Q ss_pred             CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC----CCeEEEEEEcCCCchHHHHHcC
Q 018045          247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKEYAKQKL  322 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~~~~l~~~~~  322 (361)
                      .+..|.+|++++|++.+.  +++++++|+|||+||++|+.+.|.|+++++.+..    .++.|+.||++.+ .+++ ++|
T Consensus        13 ~~~~v~~l~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~-~~l~-~~~   88 (127)
T 3h79_A           13 RPSRVVELTDETFDSIVM--DPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY-PDVI-ERM   88 (127)
T ss_dssp             CCCCCEECCTTTHHHHHT--CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC-HHHH-HHT
T ss_pred             CCCceEECChhhHHHHHh--CCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc-HhHH-Hhc
Confidence            346799999999999874  3589999999999999999999999999998742    3699999999999 9999 999


Q ss_pred             CCCCCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          323 QLGSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|.++||+++|++|+.. ...|.| .++.++|.+||+++
T Consensus        89 ~v~~~Pt~~~~~~g~~~~~~~~~G-~~~~~~l~~~i~~~  126 (127)
T 3h79_A           89 RVSGFPTMRYYTRIDKQEPFEYSG-QRYLSLVDSFVFQN  126 (127)
T ss_dssp             TCCSSSEEEEECSSCSSSCEECCS-CCCHHHHHHHHHHH
T ss_pred             CCccCCEEEEEeCCCCCCceEecC-CccHHHHHHHHHhc
Confidence            99999999999988753 368887 79999999999875

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.85  E-value=5.7e-21  Score=154.01  Aligned_cols=105  Identities=11%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             ceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      +..|+ .++|++.+. ...+++|||.|||+||+||+.+.|.|+++++++++ .+.|++||+|++ ++++ .+|+|.++||
T Consensus        23 v~~l~t~~~f~~~v~-~~~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~-~v~f~kVDVDe~-~e~a-~~y~V~siPT   98 (160)
T 2av4_A           23 LQHLNSGWAVDQAIV-NEDERLVCIRFGHDYDPDCMKMDELLYKVADDIKN-FCVIYLVDITEV-PDFN-TMYELYDPVS   98 (160)
T ss_dssp             CEECCSHHHHHHHHH-HCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC-CTTT-TTTTCCSSEE
T ss_pred             hhccCCHHHHHHHHH-hcCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC-CcEEEEEECCCC-HHHH-HHcCCCCCCE
Confidence            66775 478988763 13688999999999999999999999999999987 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCe-e-------ecCCCCCC-HHHHHHHHHHh
Q 018045          330 ILFFPKHSSKP-I-------KYPSERRD-VDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~-~-------~~~~~~~~-~~~l~~~i~~~  360 (361)
                      +++|++|+... .       ...| ..+ .++|.++|+++
T Consensus        99 ~~fFk~G~~v~vd~Gtgd~~k~vG-a~~~k~~l~~~ie~~  137 (160)
T 2av4_A           99 VMFFYRNKHMMIDLGTGNNNKINW-PMNNKQEFIDIVETI  137 (160)
T ss_dssp             EEEEETTEEEEEECSSSCCSCBCS-CCCCHHHHHHHHHHH
T ss_pred             EEEEECCEEEEEecCCCCcCeEEe-ecCCHHHHHHHHHHH
Confidence            99999998421 1       4555 555 89999999864

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.85  E-value=2.6e-21  Score=153.66  Aligned_cols=107  Identities=9%  Similarity=0.186  Sum_probs=92.1

Q ss_pred             CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCC--hhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCC
Q 018045          247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC--QFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL  324 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC--~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v  324 (361)
                      .......+++++|++.+.  +.++++||+|||+||  ++|+.+.|+++++++.|.+ ++.|++||+|++ ++++ .+|+|
T Consensus        13 ~~~g~~~vt~~~F~~~v~--~~~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~-~v~~~KVdvDe~-~~la-~~ygV   87 (137)
T 2qsi_A           13 RPNAPTLVDEATVDDFIA--HSGKIVVLFFRGDAVRFPEAADLAVVLPELINAFPG-RLVAAEVAAEAE-RGLM-ARFGV   87 (137)
T ss_dssp             ----CEEECTTTHHHHHH--TSSSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTT-TEEEEEECGGGH-HHHH-HHHTC
T ss_pred             HhcCCcccCHhHHHHHHh--cCCCcEEEEEeCCccCCCchhhHHhHHHHHHHHccC-CcEEEEEECCCC-HHHH-HHcCC
Confidence            335567899999999885  234599999999999  9999999999999999987 899999999999 9999 99999


Q ss_pred             CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++||+++|++|+  .+....|..+.++|.++|+++
T Consensus        88 ~siPTlilFkdG~--~v~~~vG~~~k~~l~~~l~~~  121 (137)
T 2qsi_A           88 AVCPSLAVVQPER--TLGVIAKIQDWSSYLAQIGAM  121 (137)
T ss_dssp             CSSSEEEEEECCE--EEEEEESCCCHHHHHHHHHHH
T ss_pred             ccCCEEEEEECCE--EEEEEeCCCCHHHHHHHHHHH
Confidence            9999999999999  454444578999999999864

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.84  E-value=2.3e-21  Score=154.49  Aligned_cols=103  Identities=11%  Similarity=0.071  Sum_probs=93.5

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCC--ChhHHhhHHHHHHHHHHhcCCC-eEEEEEEcCCCchHHHHHcCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNG-VKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~~~~~~-v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      .+..+++++|++.+.   +++++||+|||+|  |++|+.+.|.+++++++|.+ + +.|++||+|++ ++++ .+|+|++
T Consensus        18 g~~~~t~~~F~~~v~---~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g-~~v~~~KVdvDe~-~~lA-~~ygV~s   91 (140)
T 2qgv_A           18 GWTPVSESRLDDWLT---QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPD-YTWQVAIADLEQS-EAIG-DRFGAFR   91 (140)
T ss_dssp             TCEECCHHHHHHHHH---TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTT-SCCEEEECCHHHH-HHHH-HHHTCCS
T ss_pred             CCccCCHHHHHHHHh---CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCC-CeEEEEEEECCCC-HHHH-HHcCCcc
Confidence            678999999999886   7889999999999  99999999999999999988 7 99999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+  .+....|..+.++|.++|+++
T Consensus        92 IPTlilFk~G~--~v~~~~G~~~k~~l~~~i~~~  123 (140)
T 2qgv_A           92 FPATLVFTGGN--YRGVLNGIHPWAELINLMRGL  123 (140)
T ss_dssp             SSEEEEEETTE--EEEEEESCCCHHHHHHHHHHH
T ss_pred             CCEEEEEECCE--EEEEEecCCCHHHHHHHHHHH
Confidence            99999999999  444444478999999999864

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.83  E-value=6.1e-20  Score=142.03  Aligned_cols=105  Identities=19%  Similarity=0.277  Sum_probs=94.1

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..|.+++.++|++.+.  +++++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ ++++ ++|+|.++|
T Consensus         4 ~~v~~l~~~~~~~~~~--~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~P   78 (111)
T 3gnj_A            4 MSLEKLDTNTFEQLIY--DEGKACLVMFSRKNCHVCQKVTPVLEELRLNYEE-SFGFYYVDVEEE-KTLF-QRFSLKGVP   78 (111)
T ss_dssp             CCSEECCHHHHHHHHT--TSCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTC-HHHH-HHTTCCSSC
T ss_pred             CcceecCHHHHHHHHH--hcCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCC-ceEEEEEECCcC-hhHH-HhcCCCcCC
Confidence            4688999999999883  3789999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        79 t~~~~~~g~~-~~~~~g-~~~~~~l~~~l~~~  108 (111)
T 3gnj_A           79 QILYFKDGEY-KGKMAG-DVEDDEVEQMIADV  108 (111)
T ss_dssp             EEEEEETTEE-EEEEES-SCCHHHHHHHHHHH
T ss_pred             EEEEEECCEE-EEEEec-cCCHHHHHHHHHHH
Confidence            9999998873 345555 68999999999875

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=6.6e-20  Score=148.17  Aligned_cols=105  Identities=26%  Similarity=0.534  Sum_probs=95.8

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      ...|..|+.++|++++.   .++++||+||++||++|+.+.|.|+++++.+++.  ++.|+.||++.+ .+++ ++|+|.
T Consensus        16 ~~~v~~l~~~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~-~~~~v~   90 (140)
T 2dj1_A           16 ENGVWVLNDGNFDNFVA---DKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSA-SMLA-SKFDVS   90 (140)
T ss_dssp             ETTEEECCTTTHHHHHT---TCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTC-HHHH-HHTTCC
T ss_pred             CCCCEEcChHhHHHHHh---cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCccc-HHHH-HHCCCC
Confidence            46799999999999886   7899999999999999999999999999999872  499999999999 9999 999999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|++|+  ...+.| ..+.++|.+||+++
T Consensus        91 ~~Pt~~~~~~G~--~~~~~g-~~~~~~l~~~l~~~  122 (140)
T 2dj1_A           91 GYPTIKILKKGQ--AVDYDG-SRTQEEIVAKVREV  122 (140)
T ss_dssp             SSSEEEEEETTE--EEECCS-CCCHHHHHHHHHHH
T ss_pred             ccCeEEEEECCc--EEEcCC-CCCHHHHHHHHHHh
Confidence            999999998887  677777 79999999999875

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.83  E-value=1.2e-19  Score=144.69  Aligned_cols=107  Identities=27%  Similarity=0.523  Sum_probs=95.7

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ...|.+|+.++|++.+.  +.+++++|+||++||++|+.+.|.++++++.+++ .+.|+.||++.+ .+++ ++|+|.++
T Consensus        16 ~~~v~~l~~~~f~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~v~~~   90 (130)
T 2dml_A           16 SDDVIELTPSNFNREVI--QSDGLWLVEFYAPWCGHCQRLTPEWKKAATALKD-VVKVGAVNADKH-QSLG-GQYGVQGF   90 (130)
T ss_dssp             TSSSEECCTTTHHHHTT--TCSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTT-TSEEEEEETTTC-HHHH-HHHTCCSS
T ss_pred             CCCcEECCHHHHHHHHh--cCCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcC-ceEEEEEeCCCC-HHHH-HHcCCCcc
Confidence            36799999999998653  3688999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+.....+.| ..+.++|.+||.+.
T Consensus        91 Pt~~~~~~~~~~~~~~~G-~~~~~~l~~~l~~~  122 (130)
T 2dml_A           91 PTIKIFGANKNKPEDYQG-GRTGEAIVDAALSA  122 (130)
T ss_dssp             SEEEEESSCTTSCEECCS-CCSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCeEEEeec-CCCHHHHHHHHHHH
Confidence            999999988765667776 78999999999764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.82  E-value=9.6e-20  Score=151.80  Aligned_cols=109  Identities=16%  Similarity=0.278  Sum_probs=93.1

Q ss_pred             CCCCceecCcccHHHHHhhcCCCCcEEEEEEC-------CCChhHHhhHHHHHHHHHHhc-----CCCeEEEEEEcCCCc
Q 018045          247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYA-------PWCQFCQAMEGSYVELADKLA-----GNGVKVGKFRADGDQ  314 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a-------~wC~~C~~~~p~~~~la~~~~-----~~~v~~~~vd~~~~~  314 (361)
                      .+..|++||+++|++++. ...+.++||+|||       +||++|+.+.|+|+++++.+.     + ++.|++||++++ 
T Consensus        16 ~~~~vi~lt~~nF~~~v~-~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~-~v~f~kvD~d~~-   92 (178)
T 3ga4_A           16 DDTGVITVTADNYPLLSR-GVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQS-LNLFFTVDVNEV-   92 (178)
T ss_dssp             CTTSEEECCTTTHHHHTT-CCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTC-CEEEEEEETTTC-
T ss_pred             ccCCCEECCHHHHHHHHc-ccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCC-CEEEEEEECccC-
Confidence            346799999999999874 2346689999999       499999999999999999997     5 799999999999 


Q ss_pred             hHHHHHcCCCCCCCeEEEEeCCCCCe-----------eecC---CCCCCHHHHHHHHHH
Q 018045          315 KEYAKQKLQLGSFPTILFFPKHSSKP-----------IKYP---SERRDVDSLMAFVDA  359 (361)
Q Consensus       315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~-----------~~~~---~~~~~~~~l~~~i~~  359 (361)
                      ++++ ++|+|+++||+++|++|+...           ..|.   +..++++.|.+||.+
T Consensus        93 ~~la-~~~~I~siPtl~~F~~g~~~~~~~~~~~~~~~~~y~~~~~~~~~ae~la~fi~~  150 (178)
T 3ga4_A           93 PQLV-KDLKLQNVPHLVVYPPAESNKQSQFEWKTSPFYQYSLVPENAENTLQFGDFLAK  150 (178)
T ss_dssp             HHHH-HHTTCCSSCEEEEECCCCGGGGGGCCTTTSCCEEECCCGGGTTCHHHHHHHHHH
T ss_pred             HHHH-HHcCCCCCCEEEEEcCCCCCCccccccccCCcceeecccCCCcCHHHHHHHHHH
Confidence            9999 999999999999999987533           3441   225899999999975

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.82  E-value=9.1e-20  Score=147.57  Aligned_cols=109  Identities=24%  Similarity=0.417  Sum_probs=93.7

Q ss_pred             CCCCceecCcccHHHHHhhcC---------CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHH
Q 018045          247 NSQNLVTLNRTGMENLARLDH---------RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEY  317 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~---------~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l  317 (361)
                      .+..|..++.++|+..+...+         .+++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .++
T Consensus        20 ~~~~v~~l~~~~f~~~l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~   97 (141)
T 3hxs_A           20 PQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAG-KIYIYKVNVDKE-PEL   97 (141)
T ss_dssp             ---CCEECCHHHHHHHTCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHH
T ss_pred             CCCCcccccHHHHHHHhhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC-ceEEEEEECCCC-HHH
Confidence            446799999999998876322         478999999999999999999999999999987 799999999999 999


Q ss_pred             HHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          318 AKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       318 ~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      + ++|+|.++||+++|+.++. ...+.| ..+.++|.++|+++
T Consensus        98 ~-~~~~v~~~Pt~~~~~~~g~-~~~~~G-~~~~~~l~~~l~~~  137 (141)
T 3hxs_A           98 A-RDFGIQSIPTIWFVPMKGE-PQVNMG-ALSKEQLKGYIDKV  137 (141)
T ss_dssp             H-HHTTCCSSSEEEEECSSSC-CEEEES-CCCHHHHHHHHHHT
T ss_pred             H-HHcCCCCcCEEEEEeCCCC-EEEEeC-CCCHHHHHHHHHHH
Confidence            9 9999999999999955443 456666 68999999999875

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.82  E-value=1.1e-19  Score=139.95  Aligned_cols=105  Identities=24%  Similarity=0.397  Sum_probs=95.0

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ++.|..++.++|++++.   ++++++|+||++||++|+.+.|.++++++.+++ .+.|+.||++.+ ++++ ++|+|.++
T Consensus         3 ~~~v~~l~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~i~~~   76 (109)
T 3tco_A            3 EDVTLVLTEENFDEVIR---NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKG-KAVFGRLNVDEN-QKIA-DKYSVLNI   76 (109)
T ss_dssp             CCCCEECCTTTHHHHHH---HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             CCeEEEecHHHHHHHHh---cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCC-CceEEEEccccC-HHHH-HhcCcccC
Confidence            35688999999999987   699999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        77 Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l~~~  107 (109)
T 3tco_A           77 PTTLIFVNGQL-VDSLVG-AVDEDTLESTVNKY  107 (109)
T ss_dssp             SEEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             CEEEEEcCCcE-EEeeec-cCCHHHHHHHHHHH
Confidence            99999988874 444555 68999999999875

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.82  E-value=1.6e-19  Score=138.96  Aligned_cols=105  Identities=23%  Similarity=0.394  Sum_probs=92.7

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+++.++|++.+.  +++++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++.+ ++++ ++|+|.++|
T Consensus         2 ~~v~~l~~~~f~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~P   76 (108)
T 2trx_A            2 DKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGIP   76 (108)
T ss_dssp             TTEEECCTTTHHHHTT--TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC-TTHH-HHTTCCSSS
T ss_pred             CcceecchhhHHHHHH--hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCC-CcEEEEEECCCC-HHHH-HHcCCcccC
Confidence            4688999999997552  4789999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        77 t~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  106 (108)
T 2trx_A           77 TLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN  106 (108)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEeCCEE-EEEEec-CCCHHHHHHHHHHh
Confidence            9999988873 334555 68999999999875

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.81  E-value=2.4e-19  Score=142.26  Aligned_cols=111  Identities=16%  Similarity=0.213  Sum_probs=93.1

Q ss_pred             cccccccCCCCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHH
Q 018045          240 EAVADIFNSQNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYA  318 (361)
Q Consensus       240 ~~~~~~~~~~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~  318 (361)
                      ++..+-.....|.+|++ ++|++++.   .+++++|+|||+||++|+.+.|.|+++++.++  ++.|+.||++.+ .+++
T Consensus        10 ~~~~~~~~~~mv~~l~~~~~f~~~~~---~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~~-~~l~   83 (125)
T 1r26_A           10 HGIRMRARYPSVVDVYSVEQFRNIMS---EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADNN-SEIV   83 (125)
T ss_dssp             --CCCSSCCSCCEEECCHHHHHHHHH---SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTTC-HHHH
T ss_pred             cceeeeccccceEECCCHHHHHHHHc---cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCCC-HHHH
Confidence            33333333345889998 99999886   89999999999999999999999999999985  599999999999 9999


Q ss_pred             HHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          319 KQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       319 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                       ++|+|.++||+++|++|+. ...+.|  .+.++|.++|+++
T Consensus        84 -~~~~v~~~Pt~~i~~~G~~-~~~~~G--~~~~~l~~~l~~~  121 (125)
T 1r26_A           84 -SKCRVLQLPTFIIARSGKM-LGHVIG--ANPGMLRQKLRDI  121 (125)
T ss_dssp             -HHTTCCSSSEEEEEETTEE-EEEEES--SCHHHHHHHHHHH
T ss_pred             -HHcCCCcccEEEEEeCCeE-EEEEeC--CCHHHHHHHHHHH
Confidence             9999999999999998873 334444  5889999999875

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.81  E-value=3.2e-19  Score=136.93  Aligned_cols=106  Identities=21%  Similarity=0.345  Sum_probs=93.7

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+++.++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ ++++ ++|+|.++|
T Consensus         2 ~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~P   76 (107)
T 2i4a_A            2 EHTLAVSDSSFDQDVL--KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDDN-PETP-NAYQVRSIP   76 (107)
T ss_dssp             CCEEECCTTTHHHHTT--TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTTC-CHHH-HHTTCCSSS
T ss_pred             CceeecchhhhhHHHH--hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCCC-HHHH-HhcCCCccC
Confidence            4689999999997652  4789999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++.
T Consensus        77 t~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           77 TLMLVRDGKV-IDKKVG-ALPKSQLKAWVESAQ  107 (107)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHHTC
T ss_pred             EEEEEeCCEE-EEEecC-CCCHHHHHHHHHhcC
Confidence            9999988873 334555 689999999999863

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.81  E-value=2.2e-19  Score=137.54  Aligned_cols=103  Identities=20%  Similarity=0.290  Sum_probs=93.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..+.+++.++|++.+    .+++++|+||++||++|+.+.|.++++++.+++ .+.|+.||++.+ ++++ ++|+|.++|
T Consensus         3 ~~v~~l~~~~~~~~~----~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~P   75 (106)
T 3die_A            3 MAIVKVTDADFDSKV----ESGVQLVDFWATACGPCKMIAPVLEELAADYEG-KADILKLDVDEN-PSTA-AKYEVMSIP   75 (106)
T ss_dssp             CCCEECCTTTHHHHS----CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHTTCCSBS
T ss_pred             cceEECCHHHHHHHh----cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEECCcC-HHHH-HhCCCcccC
Confidence            468899999999977    689999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        76 t~~~~~~G~~-~~~~~g-~~~~~~l~~~l~~~  105 (106)
T 3die_A           76 TLIVFKDGQP-VDKVVG-FQPKENLAEVLDKH  105 (106)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHTT
T ss_pred             EEEEEeCCeE-EEEEeC-CCCHHHHHHHHHHh
Confidence            9999998873 345555 78999999999875

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.81  E-value=2.1e-19  Score=137.64  Aligned_cols=102  Identities=24%  Similarity=0.393  Sum_probs=91.1

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      |.++++++|+++++   .+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++||+
T Consensus         2 v~~l~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~-~~~~-~~~~v~~~Pt~   75 (105)
T 1nsw_A            2 TMTLTDANFQQAIQ---GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDEN-PETT-SQFGIMSIPTL   75 (105)
T ss_dssp             CEEECTTTHHHHHS---SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT-TCEEEEEETTTC-HHHH-HHTTCCSSSEE
T ss_pred             ceeccHHhHHHHHh---CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECcCC-HHHH-HHcCCccccEE
Confidence            67899999997775   789999999999999999999999999999987 799999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++|+. ...+.| ..+.++|.++|+++
T Consensus        76 ~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  103 (105)
T 1nsw_A           76 ILFKGGRP-VKQLIG-YQPKEQLEAQLADV  103 (105)
T ss_dssp             EEEETTEE-EEEEES-CCCHHHHHHHTTTT
T ss_pred             EEEeCCeE-EEEEec-CCCHHHHHHHHHHH
Confidence            99988873 334555 78899999999865

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.81  E-value=3.2e-19  Score=141.47  Aligned_cols=102  Identities=19%  Similarity=0.441  Sum_probs=91.4

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+|+.++|+++++    + .++|+|||+||++|+.+.|.++++++.+++.++.|+.||++.+ .+++ ++|+|.++|
T Consensus         7 ~~v~~l~~~~f~~~~~----~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~-~~~~-~~~~v~~~P   79 (126)
T 1x5e_A            7 GNVRVITDENWRELLE----G-DWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQ-PGLS-GRFIINALP   79 (126)
T ss_dssp             CSEEECCTTTHHHHTS----S-EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTC-HHHH-HHTTCCSSS
T ss_pred             CccEEecHHHHHHHhC----C-CEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCC-HHHH-HHcCCcccC
Confidence            5689999999998764    2 3999999999999999999999999999754699999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+  ...+.| ..+.++|.+||+++
T Consensus        80 t~~~~~~G~--~~~~~G-~~~~~~l~~~l~~~  108 (126)
T 1x5e_A           80 TIYHCKDGE--FRRYQG-PRTKKDFINFISDK  108 (126)
T ss_dssp             EEEEEETTE--EEECCS-CCCHHHHHHHHHTC
T ss_pred             EEEEEeCCe--EEEeec-CCCHHHHHHHHHHH
Confidence            999998887  567776 78999999999864

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2.5e-19  Score=143.26  Aligned_cols=105  Identities=26%  Similarity=0.566  Sum_probs=93.7

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhc----CCCeEEEEEEcCCCchHHHHHcCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA----GNGVKVGKFRADGDQKEYAKQKLQL  324 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~----~~~v~~~~vd~~~~~~~l~~~~~~v  324 (361)
                      ..|..++.++|++.+.  +.++++||+||++||++|+.+.|.++++++.++    + ++.|+.||++.+ .+++ ++|+|
T Consensus         7 ~~v~~l~~~~~~~~~~--~~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~v   81 (133)
T 1x5d_A            7 GDVIELTDDSFDKNVL--DSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKG-KVKLAAVDATVN-QVLA-SRYGI   81 (133)
T ss_dssp             CSCEECCTTHHHHHTT--TSSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTT-SEEEEEEETTTC-CHHH-HHHTC
T ss_pred             CcCEEcCHhhHHHHHh--cCCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCC-cEEEEEEECCCC-HHHH-HhCCC
Confidence            5689999999998763  368899999999999999999999999999997    5 799999999999 9999 99999


Q ss_pred             CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++||+++|++|+. ...+.| ..+.++|.+||+++
T Consensus        82 ~~~Pt~~~~~~g~~-~~~~~G-~~~~~~l~~~l~~~  115 (133)
T 1x5d_A           82 RGFPTIKIFQKGES-PVDYDG-GRTRSDIVSRALDL  115 (133)
T ss_dssp             CSSSEEEEEETTEE-EEEECS-CCSHHHHHHHHHHH
T ss_pred             CeeCeEEEEeCCCc-eEEecC-CCCHHHHHHHHHHH
Confidence            99999999999773 556666 78999999999864

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.80  E-value=2.3e-19  Score=139.34  Aligned_cols=102  Identities=20%  Similarity=0.300  Sum_probs=91.7

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|.+++.++|++.+    .+++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++||
T Consensus         2 ~v~~l~~~~~~~~~----~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt   74 (112)
T 2voc_A            2 AIVKATDQSFSAET----SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDEN-QETA-GKYGVMSIPT   74 (112)
T ss_dssp             CCEECCTTTHHHHH----SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTTC-CSHH-HHTTCCSBSE
T ss_pred             CeEEecHHHHHHHh----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCCC-HHHH-HHcCCCcccE
Confidence            36789999999977    689999999999999999999999999999987 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| ..+.++|.+||++.
T Consensus        75 ~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  103 (112)
T 2voc_A           75 LLVLKDGEV-VETSVG-FKPKEALQELVNKH  103 (112)
T ss_dssp             EEEEETTEE-EEEEES-CCCHHHHHHHHHTT
T ss_pred             EEEEeCCEE-EEEEeC-CCCHHHHHHHHHHH
Confidence            999988873 344555 78999999999865

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.80  E-value=1.9e-19  Score=145.77  Aligned_cols=106  Identities=19%  Similarity=0.332  Sum_probs=93.7

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ...|.++++++|++.+.  +.+++++|+||++||++|+.+.|.|+++++.+++ ++.|+.||++.+ .+++ ++|+|.++
T Consensus         5 ~~~v~~l~~~~f~~~~~--~~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~   79 (140)
T 3hz4_A            5 GSSIIEFEDMTWSQQVE--DSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGS-SAVFGRINIATN-PWTA-EKYGVQGT   79 (140)
T ss_dssp             TTTEEEECHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTC-HHHH-HHHTCCEE
T ss_pred             CcceEEcchHhHHHHHH--hCCCcEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCcC-HhHH-HHCCCCcC
Confidence            45789999999995432  3799999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        80 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  110 (140)
T 3hz4_A           80 PTFKFFCHGRP-VWEQVG-QIYPSILKNAVRDM  110 (140)
T ss_dssp             SEEEEEETTEE-EEEEES-SCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCcE-EEEEcC-CCCHHHHHHHHHHH
Confidence            99999998874 445655 78999999999865

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.80  E-value=1.8e-19  Score=140.94  Aligned_cols=104  Identities=18%  Similarity=0.281  Sum_probs=90.9

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..+...+.++|++++. ...+++++|+|||+||++|+.+.|.++++++.+++  +.|+.||++.+ .+++ ++|+|.++|
T Consensus        12 ~~~~~~t~~~f~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~~-~~l~-~~~~v~~~P   86 (116)
T 3qfa_C           12 SVKQIESKTAFQEALD-AAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDDC-QDVA-SECEVKSMP   86 (116)
T ss_dssp             CCBCCCCHHHHHHHHH-HHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTTT-HHHH-HHTTCCSSS
T ss_pred             cccCCCCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCC-HHHH-HHcCCcccc
Confidence            3456678899999875 22689999999999999999999999999999875  99999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| . +.++|.++|+++
T Consensus        87 t~~~~~~G~~-~~~~~G-~-~~~~l~~~l~~~  115 (116)
T 3qfa_C           87 TFQFFKKGQK-VGEFSG-A-NKEKLEATINEL  115 (116)
T ss_dssp             EEEEESSSSE-EEEEES-C-CHHHHHHHHHHH
T ss_pred             EEEEEeCCeE-EEEEcC-C-CHHHHHHHHHHh
Confidence            9999988874 444555 5 999999999876

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.80  E-value=3.8e-19  Score=136.75  Aligned_cols=103  Identities=17%  Similarity=0.326  Sum_probs=92.7

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|.+++.++|+++++   .+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++||
T Consensus         2 ~v~~l~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~Pt   75 (109)
T 2yzu_A            2 KPIEVTDQNFDETLG---QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEG-KLLVAKLDVDEN-PKTA-MRYRVMSIPT   75 (109)
T ss_dssp             CCEECCTTTHHHHHH---HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTC-HHHH-HHTTCCSSSE
T ss_pred             cceEccHhHHHHHhc---CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-ceEEEEEECCCC-HhHH-HhCCCCcCCE
Confidence            578999999998776   789999999999999999999999999999987 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| ..+.++|.++|+++
T Consensus        76 ~~~~~~g~~-~~~~~g-~~~~~~l~~~l~~~  104 (109)
T 2yzu_A           76 VILFKDGQP-VEVLVG-AQPKRNYQAKIEKH  104 (109)
T ss_dssp             EEEEETTEE-EEEEES-CCCHHHHHHHHHTT
T ss_pred             EEEEeCCcE-eeeEeC-CCCHHHHHHHHHHH
Confidence            999988873 334555 68999999999875

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.80  E-value=3.5e-19  Score=146.79  Aligned_cols=104  Identities=23%  Similarity=0.464  Sum_probs=93.4

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..+.+++.++|++.+.   .+++++|+||++||++|+.+.|.|+++++.+++ ++.|++||++.+ ++++ ++|+|.++|
T Consensus        47 ~~~~~l~~~~f~~~~~---~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~vd~~~~-~~l~-~~~~i~~~P  120 (155)
T 2ppt_A           47 GKVAGIDPAILARAER---DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAG-QVRLAKIDTQAH-PAVA-GRHRIQGIP  120 (155)
T ss_dssp             SSEEECCHHHHHHHTT---CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTS-THHH-HHTTCCSSS
T ss_pred             CCCccCCHHHHHHHHh---CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccC-CEEEEEEeCCcc-HHHH-HHcCCCcCC
Confidence            4688999999999874   789999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.+||+++
T Consensus       121 t~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  150 (155)
T 2ppt_A          121 AFILFHKGRE-LARAAG-ARPASELVGFVRGK  150 (155)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEeCCeE-EEEecC-CCCHHHHHHHHHHH
Confidence            9999998874 334555 78999999999875

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.80  E-value=5.8e-19  Score=144.14  Aligned_cols=105  Identities=17%  Similarity=0.401  Sum_probs=94.9

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ...+..++.++|++++.   .+++++|+||++||++|+.+.|.|+++++.+.+ ++.|+.||++.+ .+++ ++|+|.++
T Consensus        37 ~~~v~~l~~~~~~~~~~---~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~-~~l~-~~~~v~~~  110 (148)
T 3p2a_A           37 DGEVINATAETLDKLLQ---DDLPMVIDFWAPWCGPCRSFAPIFAETAAERAG-KVRFVKVNTEAE-PALS-TRFRIRSI  110 (148)
T ss_dssp             CCCCEECCTTTHHHHTT---CSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             cCCceecCHHHHHHHHh---cCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCC-ceEEEEEECcCC-HHHH-HHCCCCcc
Confidence            34689999999999885   899999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+.++|.+||+++
T Consensus       111 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  141 (148)
T 3p2a_A          111 PTIMLYRNGKM-IDMLNG-AVPKAPFDNWLDEQ  141 (148)
T ss_dssp             SEEEEEETTEE-EEEESS-CCCHHHHHHHHHHH
T ss_pred             CEEEEEECCeE-EEEEeC-CCCHHHHHHHHHHH
Confidence            99999998874 345665 79999999999875

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.80  E-value=3.8e-19  Score=139.73  Aligned_cols=107  Identities=21%  Similarity=0.372  Sum_probs=93.9

Q ss_pred             CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      .++.+..+++++|++.+.  +++++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.+
T Consensus        11 ~~~~~~~~~~~~f~~~v~--~~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~-~v~~~~vd~d~~-~~l~-~~~~v~~   85 (119)
T 1w4v_A           11 GSTTFNIQDGPDFQDRVV--NSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHG-KVVMAKVDIDDH-TDLA-IEYEVSA   85 (119)
T ss_dssp             CCSEEECCSHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-SSEEEEEETTTT-HHHH-HHTTCCS
T ss_pred             CceEEEecChhhHHHHHH--cCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCCCC-HHHH-HHcCCCc
Confidence            345789999999998653  3688999999999999999999999999999987 799999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        86 ~Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  117 (119)
T 1w4v_A           86 VPTVLAMKNGDV-VDKFVG-IKDEDQLEAFLKKL  117 (119)
T ss_dssp             SSEEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             ccEEEEEeCCcE-EEEEcC-CCCHHHHHHHHHHH
Confidence            999999988873 334555 68999999999875

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.80  E-value=4.3e-19  Score=137.11  Aligned_cols=104  Identities=24%  Similarity=0.513  Sum_probs=93.0

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      +.|..+++++|++.+.    +++++|+||++||++|+.+.|.++++++.+..  .++.|+.||++.+ .+++ ++|+|.+
T Consensus         5 ~~v~~l~~~~~~~~~~----~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~-~~~~v~~   78 (111)
T 3uvt_A            5 STVLALTENNFDDTIA----EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAE-RNIC-SKYSVRG   78 (111)
T ss_dssp             CCSEECCTTTHHHHHH----SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTC-HHHH-HHTTCCS
T ss_pred             CcceEcChhhHHHHhc----CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEecccc-HhHH-HhcCCCc
Confidence            5689999999999885    77999999999999999999999999998763  2699999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.| ..+.++|.+||++.
T Consensus        79 ~Pt~~~~~~g~~-~~~~~g-~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           79 YPTLLLFRGGKK-VSEHSG-GRDLDSLHRFVLSQ  110 (111)
T ss_dssp             SSEEEEEETTEE-EEEECS-CCSHHHHHHHHHHH
T ss_pred             ccEEEEEeCCcE-EEeccC-CcCHHHHHHHHHhc
Confidence            999999998874 446666 68999999999874

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.80  E-value=4.6e-19  Score=137.03  Aligned_cols=101  Identities=17%  Similarity=0.278  Sum_probs=88.9

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .....+.++|++++.   ++++++|+||++||++|+.+.|.++++++.+++  +.|+.||++.+ .+++ ++|+|.++||
T Consensus         8 ~~~~~~~~~f~~~~~---~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vd~~~~-~~l~-~~~~v~~~Pt   80 (109)
T 3f3q_A            8 VTQFKTASEFDSAIA---QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ--ADFYKLDVDEL-GDVA-QKNEVSAMPT   80 (109)
T ss_dssp             CEECCSHHHHHHHTT---SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTC-HHHH-HHTTCCSSSE
T ss_pred             ccCCCCHHHHHHHHh---cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC--CEEEEEECCCC-HHHH-HHcCCCccCE
Confidence            345567889999886   799999999999999999999999999999965  99999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| . +.++|.++|+++
T Consensus        81 ~~~~~~G~~-~~~~~G-~-~~~~l~~~i~~~  108 (109)
T 3f3q_A           81 LLLFKNGKE-VAKVVG-A-NPAAIKQAIAAN  108 (109)
T ss_dssp             EEEEETTEE-EEEEES-S-CHHHHHHHHHHH
T ss_pred             EEEEECCEE-EEEEeC-C-CHHHHHHHHHhh
Confidence            999998873 444555 3 789999999886

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.80  E-value=5.9e-19  Score=142.04  Aligned_cols=106  Identities=22%  Similarity=0.359  Sum_probs=93.2

Q ss_pred             CCceecCcccHHHHHhhc---------CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH
Q 018045          249 QNLVTLNRTGMENLARLD---------HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK  319 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~---------~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~  319 (361)
                      ..|.+|++++|++.+...         +.+++++|+||++||++|+.+.|.|+++++.+++ ++.|+.||++.+ .+++ 
T Consensus         9 ~~v~~l~~~~f~~~v~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-   85 (136)
T 2l5l_A            9 GKVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYDG-QIVIYKVDTEKE-QELA-   85 (136)
T ss_dssp             TSEEEECHHHHHHHTBCTTTCSSSCCBCCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-
T ss_pred             CceEEecchHHHHHHHhhccCccceeecCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CEEEEEEeCCCC-HHHH-
Confidence            468899999999877522         1468999999999999999999999999999987 799999999999 9999 


Q ss_pred             HcCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          320 QKLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+|.++||+++| ++|+  .+.+.| ..+.++|.++|+++
T Consensus        86 ~~~~v~~~Pt~~~~~~~G~--~~~~~G-~~~~~~l~~~l~~~  124 (136)
T 2l5l_A           86 GAFGIRSIPSILFIPMEGK--PEMAQG-AMPKASFKKAIDEF  124 (136)
T ss_dssp             HHTTCCSSCEEEEECSSSC--CEEEES-CCCHHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCCc--EEEEeC-CCCHHHHHHHHHHH
Confidence            99999999999999 6776  446666 68999999999875

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.80  E-value=6.7e-19  Score=136.48  Aligned_cols=105  Identities=17%  Similarity=0.309  Sum_probs=92.3

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..|..++.++|++.+.  +++++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++|
T Consensus         5 ~~v~~l~~~~~~~~~~--~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~P   79 (112)
T 1t00_A            5 GTLKHVTDDSFEQDVL--KNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGD-KIEIVKLNIDEN-PGTA-AKYGVMSIP   79 (112)
T ss_dssp             CCCEEECTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHTTCCSSS
T ss_pred             ceEEecchhhHHHHHh--hCCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcC-CeEEEEEEcCCC-HHHH-HhCCCCccc
Confidence            4688999999987553  3689999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        80 t~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  109 (112)
T 1t00_A           80 TLNVYQGGEV-AKTIVG-AKPKAAIVRDLEDF  109 (112)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHTHHH
T ss_pred             EEEEEeCCEE-EEEEeC-CCCHHHHHHHHHHH
Confidence            9999998873 344555 78899999999875

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.80  E-value=5.8e-19  Score=135.58  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=91.9

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|..+++++|++.+.  +++++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ ++++ ++|+|.++||
T Consensus         2 ~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~Pt   76 (107)
T 1dby_A            2 EAGAVNDDTFKNVVL--ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDES-PNVA-SEYGIRSIPT   76 (107)
T ss_dssp             CCEEECHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHHTCCSSCE
T ss_pred             ccEeccHHHHHHHHh--cCCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCC-ceEEEEEECCCC-HHHH-HHCCCCcCCE
Confidence            478899999998653  3689999999999999999999999999999987 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| ..+.++|.++|+++
T Consensus        77 ~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  105 (107)
T 1dby_A           77 IMVFKGGKK-CETIIG-AVPKATIVQTVEKY  105 (107)
T ss_dssp             EEEESSSSE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEeCCEE-EEEEeC-CCCHHHHHHHHHHH
Confidence            999988873 334555 68899999999876

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.80  E-value=3.4e-19  Score=142.00  Aligned_cols=106  Identities=23%  Similarity=0.362  Sum_probs=93.2

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      +..|.+++.++|++.+.  +.+++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++
T Consensus        21 ~~~v~~l~~~~f~~~~~--~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~   95 (128)
T 2o8v_B           21 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPAKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI   95 (128)
T ss_dssp             CCCSEEECTTTHHHHTT--TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTT-TEEEEEEETTTC-CTTS-GGGTCCSS
T ss_pred             ccccEecChhhHHHHHH--hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCcc
Confidence            35689999999997552  4789999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        96 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  126 (128)
T 2o8v_B           96 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN  126 (128)
T ss_dssp             SEEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             CEEEEEeCCEE-EEEEcC-CCCHHHHHHHHHHh
Confidence            99999988873 334555 68999999999875

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.79  E-value=7.1e-19  Score=136.39  Aligned_cols=105  Identities=11%  Similarity=0.299  Sum_probs=86.6

Q ss_pred             ceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |.++++ ++|++++.....+++++|+||++||++|+.+.|.++++++.++..++.|+.||++.+ ++++ ++|+|.++||
T Consensus         2 v~~i~~~~~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~~Pt   79 (112)
T 3d6i_A            2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADEN-SEIS-ELFEISAVPY   79 (112)
T ss_dssp             EEEECCHHHHHHHHTTTTTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTC-HHHH-HHTTCCSSSE
T ss_pred             ccccCCHHHHHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccC-HHHH-HHcCCCcccE
Confidence            677887 999998862234899999999999999999999999999996433699999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| . +.++|.++|+++
T Consensus        80 ~~~~~~G~~-~~~~~G-~-~~~~l~~~l~~~  107 (112)
T 3d6i_A           80 FIIIHKGTI-LKELSG-A-DPKEYVSLLEDC  107 (112)
T ss_dssp             EEEEETTEE-EEEECS-C-CHHHHHHHHHHH
T ss_pred             EEEEECCEE-EEEecC-C-CHHHHHHHHHHH
Confidence            999998873 344555 3 566799999865

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.79  E-value=1.1e-18  Score=135.77  Aligned_cols=105  Identities=21%  Similarity=0.348  Sum_probs=93.1

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+++.++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++|
T Consensus         7 ~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~~-~~~~-~~~~v~~~P   81 (115)
T 1thx_A            7 KGVITITDAEFESEVL--KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPN-PTTV-KKYKVEGVP   81 (115)
T ss_dssp             CSEEECCGGGHHHHTT--TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTC-HHHH-HHTTCCSSS
T ss_pred             CceEEeeccchhhHhh--cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCC-cEEEEEEEcCCC-HHHH-HHcCCCcee
Confidence            4689999999998652  4789999999999999999999999999999987 699999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        82 t~~~~~~G~~-~~~~~g-~~~~~~l~~~l~~~  111 (115)
T 1thx_A           82 ALRLVKGEQI-LDSTEG-VISKDKLLSFLDTH  111 (115)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEcCCEE-EEEecC-CCCHHHHHHHHHHH
Confidence            9999988873 334555 68999999999875

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.79  E-value=9.5e-20  Score=139.83  Aligned_cols=97  Identities=13%  Similarity=0.155  Sum_probs=74.9

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      +.++|++.++   ++++++|+|||+||++|+.+.|.++++++.++  ++.|+.||++.+ ++++ ++|+|.++||+++|+
T Consensus         7 ~~~~~~~~~~---~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~~-~~l~-~~~~v~~~Pt~~~~~   79 (105)
T 4euy_A            7 TIEELATYIE---EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQDM-QEIA-GRYAVFTGPTVLLFY   79 (105)
T ss_dssp             ---CCSSSTT---CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECCC-----------CCCCEEEEEE
T ss_pred             CHHHHHHHHh---cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCCC-HHHH-HhcCCCCCCEEEEEe
Confidence            4566777664   78999999999999999999999999999984  599999999999 9999 999999999999999


Q ss_pred             CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          335 KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+. ...+.| ..+.++|.++|+++
T Consensus        80 ~G~~-~~~~~g-~~~~~~l~~~l~~~  103 (105)
T 4euy_A           80 NGKE-ILRESR-FISLENLERTIQLF  103 (105)
T ss_dssp             TTEE-EEEEES-SCCHHHHHHHHHTT
T ss_pred             CCeE-EEEEeC-CcCHHHHHHHHHHh
Confidence            8873 344455 78999999999875

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.79  E-value=9.3e-19  Score=135.55  Aligned_cols=105  Identities=19%  Similarity=0.346  Sum_probs=90.5

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHHHcCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGS  326 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~v~~  326 (361)
                      .+.|..++.++|++.+. ...+++++|+||++||++|+.+.|.++++++.+++  +.|+.||++ .+ .+++ ++|+|.+
T Consensus         4 ~~~v~~l~~~~~~~~~~-~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~~~-~~~~-~~~~v~~   78 (111)
T 2pu9_C            4 VGKVTEVNKDTFWPIVK-AAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD--VIFLKLDCNQEN-KTLA-KELGIRV   78 (111)
T ss_dssp             TTSEEEECTTTHHHHHT-TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSTT-HHHH-HHHCCSB
T ss_pred             cCccEEechHHHHHHHH-hcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC--eEEEEEecCcch-HHHH-HHcCCCe
Confidence            35789999999999885 22588999999999999999999999999999875  999999998 56 8999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||++++++|+. ...+.| . +.++|.++|+++
T Consensus        79 ~Pt~~~~~~G~~-~~~~~G-~-~~~~l~~~l~~~  109 (111)
T 2pu9_C           79 VPTFKILKENSV-VGEVTG-A-KYDKLLEAIQAA  109 (111)
T ss_dssp             SSEEEEESSSSE-EEEEES-S-CHHHHHHHHHHH
T ss_pred             eeEEEEEeCCcE-EEEEcC-C-CHHHHHHHHHHh
Confidence            999999988873 334555 3 589999999876

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.79  E-value=1e-18  Score=133.54  Aligned_cols=103  Identities=22%  Similarity=0.409  Sum_probs=91.3

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      |..++.++|++.+.  ..+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ ++++ ++|+|.++||+
T Consensus         2 v~~~~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~Pt~   76 (105)
T 1fb6_A            2 VQDVNDSSWKEFVL--ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEA-PGIA-TQYNIRSIPTV   76 (105)
T ss_dssp             CEECCTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHTTCCSSSEE
T ss_pred             ceechhhhHHHHHh--cCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcC-ceEEEEEcCcch-HHHH-HhCCCCcccEE
Confidence            67899999998664  3688999999999999999999999999999987 799999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++|+. ...+.| ..+.++|.++|+++
T Consensus        77 ~~~~~g~~-~~~~~G-~~~~~~l~~~l~~~  104 (105)
T 1fb6_A           77 LFFKNGER-KESIIG-AVPKSTLTDSIEKY  104 (105)
T ss_dssp             EEEETTEE-EEEEEE-CCCHHHHHHHHHHH
T ss_pred             EEEeCCeE-EEEEec-CCCHHHHHHHHHhh
Confidence            99998873 334455 68999999999886

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.79  E-value=4.8e-19  Score=139.53  Aligned_cols=106  Identities=22%  Similarity=0.446  Sum_probs=91.1

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+++.++|++.+.  +.+++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++|
T Consensus         3 ~~v~~l~~~~f~~~~~--~~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~P   77 (122)
T 3aps_A            3 QASIDLTPQTFNEKVL--QGKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQAY-PQTC-QKAGIKAYP   77 (122)
T ss_dssp             CCSEECCHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC-HHHH-HHTTCCSSS
T ss_pred             cchhcCCHHHHHHHHh--cCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcCC-HHHH-HHcCCCccc
Confidence            4688999999965432  3789999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.|   +..+.++|.++|+++
T Consensus        78 t~~~~~~~~~-~~~~~g~~~~~~~~~~l~~~l~~~  111 (122)
T 3aps_A           78 SVKLYQYERA-KKSIWEEQINSRDAKTIAALIYGK  111 (122)
T ss_dssp             EEEEEEEEGG-GTEEEEEEECCSCHHHHHHHHHHH
T ss_pred             eEEEEeCCCc-cceeeccccCcCCHHHHHHHHHHH
Confidence            9999977764 334444   237999999999864

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.79  E-value=1.4e-18  Score=133.59  Aligned_cols=102  Identities=12%  Similarity=0.128  Sum_probs=86.7

Q ss_pred             ceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |.++ +.++|++.+.. .++++++|+||++||++|+.+.|.++++++.++  ++.|+.||++.+ ++++ ++|+|.++||
T Consensus         3 v~~i~~~~~~~~~~~~-~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~~-~~~~-~~~~v~~~Pt   77 (107)
T 1gh2_A            3 VKPVGSDPDFQPELSG-AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQC-QGTA-ATNNISATPT   77 (107)
T ss_dssp             EEEECSGGGHHHHHHH-TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTS-HHHH-HHTTCCSSSE
T ss_pred             eEEecCHHHHHHHHHh-CCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECccC-HHHH-HhcCCCcccE
Confidence            5566 56889998841 368999999999999999999999999999994  599999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.|  .+.++|.++|+++
T Consensus        78 ~~~~~~G~~-~~~~~G--~~~~~l~~~l~~~  105 (107)
T 1gh2_A           78 FQFFRNKVR-IDQYQG--ADAVGLEEKIKQH  105 (107)
T ss_dssp             EEEEETTEE-EEEEES--SCHHHHHHHHHHH
T ss_pred             EEEEECCeE-EEEEeC--CCHHHHHHHHHHh
Confidence            999998873 334555  4566799999875

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.79  E-value=1e-18  Score=133.03  Aligned_cols=101  Identities=21%  Similarity=0.392  Sum_probs=90.6

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      |.+++.++|++.+.   ++++++|.||++||++|+.+.|.++++++.+++  +.|+.||++.+ .+++ ++|+|.++||+
T Consensus         1 V~~l~~~~~~~~~~---~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~~-~~~~-~~~~v~~~Pt~   73 (104)
T 2e0q_A            1 VIHLDSKNFDSFLA---SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDEN-PDIA-ARYGVMSLPTV   73 (104)
T ss_dssp             CEECCTTTHHHHHH---HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTC-HHHH-HHTTCCSSCEE
T ss_pred             CeecCHHHHHHHHh---cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCCC-HHHH-HhCCccccCEE
Confidence            56899999999886   789999999999999999999999999999976  99999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++|+. ...+.| ..+.++|.++|+++
T Consensus        74 ~~~~~g~~-~~~~~g-~~~~~~l~~~l~~~  101 (104)
T 2e0q_A           74 IFFKDGEP-VDEIIG-AVPREEIEIRIKNL  101 (104)
T ss_dssp             EEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEECCeE-hhhccC-CCCHHHHHHHHHHH
Confidence            99988873 334555 68999999999875

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.78  E-value=8.7e-19  Score=135.75  Aligned_cols=106  Identities=18%  Similarity=0.312  Sum_probs=90.7

Q ss_pred             CCceec-CcccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      +.|..+ +.++|++.+.. ...+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.+
T Consensus         2 ~~v~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~   78 (112)
T 1ep7_A            2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAV-AAVA-EAAGITA   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTT-HHHH-HHHTCCB
T ss_pred             CcEEEecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCch-HHHH-HHcCCCc
Confidence            357778 56889998862 11289999999999999999999999999999986 799999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.| . +.++|.++|+++
T Consensus        79 ~Pt~~~~~~G~~-~~~~~G-~-~~~~l~~~l~~~  109 (112)
T 1ep7_A           79 MPTFHVYKDGVK-ADDLVG-A-SQDKLKALVAKH  109 (112)
T ss_dssp             SSEEEEEETTEE-EEEEES-C-CHHHHHHHHHHH
T ss_pred             ccEEEEEECCeE-EEEEcC-C-CHHHHHHHHHHH
Confidence            999999998874 344555 5 899999999875

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=2.1e-19  Score=143.90  Aligned_cols=109  Identities=28%  Similarity=0.579  Sum_probs=94.9

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ...|..|+.++|++.+.  +++++++|+||++||++|+.+.|.|+++++.+++ .++.|+.||++.+ ..++ ++|+|.+
T Consensus         6 ~~~v~~l~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~-~~~~-~~~~v~~   81 (133)
T 2dj3_A            6 SGPVKVVVGKTFDAIVM--DPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATAN-DITN-DQYKVEG   81 (133)
T ss_dssp             SCSSEECCTTTCCCCCT--CTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTS-CCCC-SSCCCSS
T ss_pred             CCceEEEcCCCHHHHhc--cCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcC-HHHH-hhcCCCc
Confidence            35789999999988764  3589999999999999999999999999999974 2799999999999 8888 8999999


Q ss_pred             CCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+.. .+.+.||..+.++|.+||+++
T Consensus        82 ~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~  116 (133)
T 2dj3_A           82 FPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEH  116 (133)
T ss_dssp             SSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHH
T ss_pred             CCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHh
Confidence            9999999887653 456776578999999999875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.78  E-value=6.7e-19  Score=137.78  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=85.0

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+++.++|.+.+...+.+++++|+|||+||++|+.|.|.++++++++.+  +.|++||+++.    + ++|+|.++|
T Consensus         3 G~v~~it~~~f~~~v~~~~~~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~--v~f~kvd~d~~----~-~~~~v~~~P   75 (118)
T 3evi_A            3 GELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE--TKFVKAIVNSC----I-QHYHDNCLP   75 (118)
T ss_dssp             CSCEECCGGGHHHHTTTCCTTCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT--SEEEEEEGGGT----S-TTCCGGGCS
T ss_pred             cceEEeCHHHHHHHHHhcCCCCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--CEEEEEEhHHh----H-HHCCCCCCC
Confidence            3588899999998765222344999999999999999999999999999964  99999999976    4 789999999


Q ss_pred             eEEEEeCCCCCeeecCC------CCCCHHHHHHHHHH
Q 018045          329 TILFFPKHSSKPIKYPS------ERRDVDSLMAFVDA  359 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~------~~~~~~~l~~~i~~  359 (361)
                      |+++|++|+.. ..+.|      ...+.++|..+|.+
T Consensus        76 T~~~fk~G~~v-~~~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           76 TIFVYKNGQIE-AKFIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             EEEEEETTEEE-EEEESTTTTTCSSCCHHHHHHHHHT
T ss_pred             EEEEEECCEEE-EEEeChhhhCCCCCCHHHHHHHHHH
Confidence            99999999852 22222      24689999999975

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.78  E-value=1.3e-18  Score=153.66  Aligned_cols=107  Identities=23%  Similarity=0.523  Sum_probs=96.9

Q ss_pred             cCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCCchHHHHHcCC
Q 018045          246 FNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN--GVKVGKFRADGDQKEYAKQKLQ  323 (361)
Q Consensus       246 ~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~~~~l~~~~~~  323 (361)
                      ..++.|..|++++|++++.   ++++++|+|||+||++|+.+.|.|+++++.+++.  ++.|+.||++.+ .+++ ++|+
T Consensus        12 ~~~~~v~~l~~~~~~~~~~---~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-~~l~-~~~~   86 (241)
T 3idv_A           12 KEENGVLVLNDANFDNFVA---DKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSA-SVLA-SRFD   86 (241)
T ss_dssp             EEETTEEEECTTTHHHHHT---TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTC-HHHH-HHTT
T ss_pred             ccCCCcEEecccCHHHHHh---cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCC-HHHH-HhcC
Confidence            3446799999999999886   7899999999999999999999999999999872  399999999999 9999 9999


Q ss_pred             CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |.++||+++|++|+  .+.+.| .++.++|.+|++++
T Consensus        87 v~~~Pt~~~~~~g~--~~~~~g-~~~~~~l~~~i~~~  120 (241)
T 3idv_A           87 VSGYPTIKILKKGQ--AVDYEG-SRTQEEIVAKVREV  120 (241)
T ss_dssp             CCSSSEEEEEETTE--EEECCS-CSCHHHHHHHHHHH
T ss_pred             CCcCCEEEEEcCCC--cccccC-cccHHHHHHHHhhc
Confidence            99999999999888  567877 79999999999864

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.78  E-value=4.1e-19  Score=139.09  Aligned_cols=106  Identities=25%  Similarity=0.590  Sum_probs=94.9

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      +.|.+++.++|++++.   ++++++|.||++||++|+.+.|.++++++.+++  .++.|+.||++.+ .+++ ++|+|.+
T Consensus         7 ~~v~~l~~~~~~~~~~---~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~~~~-~~~~v~~   81 (120)
T 1mek_A            7 DHVLVLRKSNFAEALA---AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE-SDLA-QQYGVRG   81 (120)
T ss_dssp             TTEEECCTTTHHHHHH---HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC-CSSH-HHHTCCS
T ss_pred             CCcEEechhhHHHHHc---cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCC-HHHH-HHCCCCc
Confidence            5789999999999886   789999999999999999999999999999874  3699999999999 8999 9999999


Q ss_pred             CCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+.. ...+.| ..+.++|.+||+++
T Consensus        82 ~Pt~~~~~~g~~~~~~~~~g-~~~~~~l~~~l~~~  115 (120)
T 1mek_A           82 YPTIKFFRNGDTASPKEYTA-GREADDIVNWLKKR  115 (120)
T ss_dssp             SSEEEEEESSCSSSCEECCC-CSSHHHHHHHHHTT
T ss_pred             ccEEEEEeCCCcCCcccccC-ccCHHHHHHHHHhc
Confidence            9999999988752 256776 78999999999875

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.78  E-value=1.4e-18  Score=134.88  Aligned_cols=102  Identities=18%  Similarity=0.298  Sum_probs=91.0

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +....++.++|+++++   .+++++|+||++||++|+.+.|.++++++.+++  +.|+.||++.+ .+++ ++|+|.++|
T Consensus         9 ~~~~~~~~~~f~~~~~---~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--v~~~~vd~~~~-~~~~-~~~~v~~~P   81 (112)
T 1syr_A            9 MVKIVTSQAEFDSIIS---QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDEV-SEVT-EKENITSMP   81 (112)
T ss_dssp             CCEEECSHHHHHHHHH---HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTT-HHHH-HHTTCCSSS
T ss_pred             eEEEECCHHHHHHHHc---cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC--CEEEEEECCCC-HHHH-HHcCCCccc
Confidence            4567789999999887   789999999999999999999999999999864  99999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| . +.++|.++|+++
T Consensus        82 t~~~~~~G~~-~~~~~G-~-~~~~l~~~l~~~  110 (112)
T 1syr_A           82 TFKVYKNGSS-VDTLLG-A-NDSALKQLIEKY  110 (112)
T ss_dssp             EEEEEETTEE-EEEEES-C-CHHHHHHHHHTT
T ss_pred             EEEEEECCcE-EEEEeC-C-CHHHHHHHHHHh
Confidence            9999998873 334555 5 999999999875

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.78  E-value=1.5e-18  Score=136.43  Aligned_cols=105  Identities=20%  Similarity=0.371  Sum_probs=92.4

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..|..++.++|++.+.  +.+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++|
T Consensus        12 ~~v~~l~~~~~~~~~~--~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~i~~~P   86 (121)
T 2i1u_A           12 SATIKVTDASFATDVL--SSNKPVLVDFWATWCGPCKMVAPVLEEIATERAT-DLTVAKLDVDTN-PETA-RNFQVVSIP   86 (121)
T ss_dssp             CCSEECCTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHTTCCSSS
T ss_pred             ccceecCHHHHHHHHH--hCCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HhcCCCcCC
Confidence            5689999999987543  3688999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        87 t~~~~~~g~~-~~~~~G-~~~~~~l~~~l~~~  116 (121)
T 2i1u_A           87 TLILFKDGQP-VKRIVG-AKGKAALLRELSDV  116 (121)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHTCSC
T ss_pred             EEEEEECCEE-EEEecC-CCCHHHHHHHHHHH
Confidence            9999998873 344555 78899999998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.77  E-value=1.5e-18  Score=157.51  Aligned_cols=107  Identities=18%  Similarity=0.372  Sum_probs=94.7

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      .+.|.++|.++|++++. .+.+++|+|+||++||++|+.+.|.++++++.+++ ++.|++||++.+ ++++ ++|+|.++
T Consensus         6 ~~~v~~~~~~~f~~~~~-~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~   81 (287)
T 3qou_A            6 VENIVNINESNLQQVLE-QSMTTPVLFYFWSERSQHCLQLTPILESLAAQYNG-QFILAKLDCDAE-QMIA-AQFGLRAI   81 (287)
T ss_dssp             CTTEEECCTTTHHHHHT-TTTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTS-SSEEEEEETTTC-HHHH-HTTTCCSS
T ss_pred             CCccEECCHHHHHHHHH-hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEEeCccC-HHHH-HHcCCCCC
Confidence            45799999999999775 23489999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+.+.+.++|+.+
T Consensus        82 Pt~~~~~~G~~-~~~~~g-~~~~~~l~~~l~~~  112 (287)
T 3qou_A           82 PTVYLFQNGQP-VDGFQG-PQPEEAIRALLDXV  112 (287)
T ss_dssp             SEEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             CeEEEEECCEE-EEEeeC-CCCHHHHHHHHHHH
Confidence            99999998873 334555 78999999999764

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.77  E-value=3.1e-18  Score=135.33  Aligned_cols=106  Identities=21%  Similarity=0.393  Sum_probs=91.0

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHHHcCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGS  326 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~v~~  326 (361)
                      .+.|..++.++|++.+. ...+++++|.||++||++|+.+.|.++++++.+++  +.|+.||++ .+ .+++ ++|+|.+
T Consensus        17 ~~~v~~l~~~~~~~~~~-~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~~~-~~~~-~~~~v~~   91 (124)
T 1faa_A           17 VGKVTEVNKDTFWPIVK-AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQEN-KTLA-KELGIRV   91 (124)
T ss_dssp             TTSEEEECTTTHHHHHH-HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSTT-HHHH-HHHCCSS
T ss_pred             CCceEEecchhHHHHHH-hcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC--CEEEEEecCcch-HHHH-HHcCCCe
Confidence            35689999999998875 23688999999999999999999999999999875  999999998 56 8999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      +||++++++|+. ...+.| . ..++|.++|++++
T Consensus        92 ~Pt~~~~~~G~~-~~~~~G-~-~~~~l~~~i~~~~  123 (124)
T 1faa_A           92 VPTFKILKENSV-VGEVTG-A-KYDKLLEAIQAAR  123 (124)
T ss_dssp             SSEEEEEETTEE-EEEEES-S-CHHHHHHHHHHHT
T ss_pred             eeEEEEEeCCcE-EEEEcC-C-CHHHHHHHHHHhh
Confidence            999999998873 334455 3 4899999999864

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.77  E-value=1.7e-18  Score=141.66  Aligned_cols=103  Identities=9%  Similarity=0.208  Sum_probs=87.1

Q ss_pred             cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEE
Q 018045          254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFF  333 (361)
Q Consensus       254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~  333 (361)
                      .+.++|++.+. ..+++++||+|||+||++|+.+.|.++++++.+++ .+.|+.||++.+ ++++ ++|+|.++||+++|
T Consensus         9 ~~~~~~~~~i~-~~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~-~~~~~~vd~d~~-~~l~-~~~~v~~~Pt~~~~   84 (149)
T 3gix_A            9 TSKKEVDQAIK-STAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSK-MAAIYLVDVDQT-AVYT-QYFDISYIPSTVFF   84 (149)
T ss_dssp             CSHHHHHHHHH-HCCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTT-TEEEEEEETTTC-CHHH-HHTTCCSSSEEEEE
T ss_pred             CCHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCcC-HHHH-HHcCCCccCeEEEE
Confidence            36678988773 23689999999999999999999999999999977 699999999999 9999 99999999999999


Q ss_pred             eCCCCCe--------eecCCCCCCHHHHHHHHHHh
Q 018045          334 PKHSSKP--------IKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       334 ~~g~~~~--------~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+...        ..+.|...+.++|.++|+++
T Consensus        85 ~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~  119 (149)
T 3gix_A           85 FNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI  119 (149)
T ss_dssp             ETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred             ECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence            9998320        13333267899999999865

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.77  E-value=3.3e-18  Score=133.74  Aligned_cols=102  Identities=20%  Similarity=0.394  Sum_probs=88.8

Q ss_pred             CceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ++.++++ ++|++.+. ...+++++|+||++||++|+.+.|.++++++.+   ++.|+.||++.+ .+++ ++|+|.++|
T Consensus        14 ~v~~l~~~~~~~~~l~-~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~~-~~~~-~~~~v~~~P   87 (117)
T 2xc2_A           14 ELIELKQDGDLESLLE-QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDKL-EETA-RKYNISAMP   87 (117)
T ss_dssp             EEEECCSTTHHHHHHH-HTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTTS-HHHH-HHTTCCSSS
T ss_pred             eeEEeCCHHHHHHHHH-hCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCcc-HHHH-HHcCCCccc
Confidence            4888988 89998876 236889999999999999999999999999887   499999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.|  .+.++|.++|+++
T Consensus        88 t~~~~~~G~~-~~~~~G--~~~~~l~~~l~~~  116 (117)
T 2xc2_A           88 TFIAIKNGEK-VGDVVG--ASIAKVEDMIKKF  116 (117)
T ss_dssp             EEEEEETTEE-EEEEES--SCHHHHHHHHHHH
T ss_pred             eEEEEeCCcE-EEEEeC--CCHHHHHHHHHHh
Confidence            9999998873 334444  5889999999876

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.77  E-value=3.5e-18  Score=130.79  Aligned_cols=103  Identities=18%  Similarity=0.363  Sum_probs=89.5

Q ss_pred             ceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |.++++ ++|++.+. ..++++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++||
T Consensus         2 v~~l~~~~~~~~~l~-~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~Pt   77 (106)
T 1xwb_A            2 VYQVKDKADLDGQLT-KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDEC-EDIA-MEYNISSMPT   77 (106)
T ss_dssp             EEECCSHHHHHHHHH-HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC-HHHH-HHTTCCSSSE
T ss_pred             ceecCCHHHHHHHHH-hcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEeccch-HHHH-HHcCCCcccE
Confidence            567877 88988775 23688999999999999999999999999999975 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.|  .+.++|.++|+++
T Consensus        78 ~~~~~~G~~-~~~~~g--~~~~~l~~~i~~~  105 (106)
T 1xwb_A           78 FVFLKNGVK-VEEFAG--ANAKRLEDVIKAN  105 (106)
T ss_dssp             EEEEETTEE-EEEEES--CCHHHHHHHHHHT
T ss_pred             EEEEcCCcE-EEEEcC--CCHHHHHHHHHHh
Confidence            999998873 334444  6889999999876

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.77  E-value=4.3e-18  Score=147.42  Aligned_cols=105  Identities=24%  Similarity=0.554  Sum_probs=95.4

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ...+..++.++|+..+.   .++++||+|||+||++|+.+.|.|+++++.+++ .+.|+.||++.+ .+++ ++|+|.++
T Consensus        96 ~~~v~~l~~~~f~~~~~---~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~  169 (210)
T 3apq_A           96 DPEIITLERREFDAAVN---SGELWFVNFYSPGCSHCHDLAPTWREFAKEVDG-LLRIGAVNCGDD-RMLC-RMKGVNSY  169 (210)
T ss_dssp             CTTSEECCHHHHHHHHH---HSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBT-TBEEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             CCceEEecHHHHHHHHc---cCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcC-ceEEEEEECCcc-HHHH-HHcCCCcC
Confidence            35689999999999886   789999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+.++|.+||+++
T Consensus       170 Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~  200 (210)
T 3apq_A          170 PSLFIFRSGMA-AVKYNG-DRSKESLVAFAMQH  200 (210)
T ss_dssp             SEEEEECTTSC-CEECCS-CCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCc-eeEecC-CCCHHHHHHHHHHh
Confidence            99999988875 556666 78999999999864

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.77  E-value=4.6e-18  Score=129.99  Aligned_cols=101  Identities=20%  Similarity=0.358  Sum_probs=87.3

Q ss_pred             eec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          252 VTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       252 ~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      .++ +.++|++.+. ..++++++|.||++||++|+.+.|.++++++.+++  +.|+.||++.+ ++++ ++|+|.++||+
T Consensus         3 ~~i~~~~~~~~~l~-~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~Pt~   77 (105)
T 3m9j_A            3 KQIESKTAFQEALD-AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDDC-QDVA-SESEVKSMPTF   77 (105)
T ss_dssp             EECCSHHHHHHHHH-HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTTC-HHHH-HHTTCCBSSEE
T ss_pred             EEcCCHHHHHHHHH-hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhhh-HHHH-HHcCCCcCcEE
Confidence            445 5677888775 23589999999999999999999999999999975  99999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++|+. ...+.| . +.++|.++|+++
T Consensus        78 ~~~~~g~~-~~~~~g-~-~~~~l~~~l~~~  104 (105)
T 3m9j_A           78 QFFKKGQK-VGEFSG-A-NKEKLEATINEL  104 (105)
T ss_dssp             EEEETTEE-EEEEES-S-CHHHHHHHHHHH
T ss_pred             EEEECCeE-EEEEeC-C-CHHHHHHHHHHh
Confidence            99988873 344555 5 999999999876

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.76  E-value=1.7e-18  Score=136.05  Aligned_cols=105  Identities=25%  Similarity=0.552  Sum_probs=90.4

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC----CCeEEEEEEcCCCchHHHHHcCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG----NGVKVGKFRADGDQKEYAKQKLQ  323 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~~~~l~~~~~~  323 (361)
                      +..|..|+.++|++.+.  .++++++|+|||+||++|+.+.|.|+++++.+++    .++.|+.||++.+ . ++ +  +
T Consensus         6 ~~~v~~l~~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~-~~-~--~   78 (121)
T 2djj_A            6 EGPVTVVVAKNYNEIVL--DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAN-D-VP-D--E   78 (121)
T ss_dssp             SCSSEECCTTTTTTSSS--CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTS-C-CS-S--C
T ss_pred             CCCeEEecccCHHHHhh--cCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECccc-c-cc-c--c
Confidence            45789999999998752  3789999999999999999999999999999975    2699999999988 4 66 4  9


Q ss_pred             CCCCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          324 LGSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |.++||+++|++|+.. ...+.| ..+.++|.+||+++
T Consensus        79 v~~~Pt~~~~~~~~~~~~~~~~G-~~~~~~l~~~i~~~  115 (121)
T 2djj_A           79 IQGFPTIKLYPAGAKGQPVTYSG-SRTVEDLIKFIAEN  115 (121)
T ss_dssp             CSSSSEEEEECSSCTTSCCCCCC-CSCHHHHHHHHHHT
T ss_pred             cCcCCeEEEEeCcCCCCceEecC-CCCHHHHHHHHHhc
Confidence            9999999999888653 556666 78999999999875

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.76  E-value=6.2e-19  Score=139.46  Aligned_cols=105  Identities=23%  Similarity=0.394  Sum_probs=86.8

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCCh--------------hHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQ--------------FCQAMEGSYVELADKLAGNGVKVGKFRADGDQ  314 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~--------------~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~  314 (361)
                      +.|.+++.++|++.+.  +++++++|+|||+||+              +|+.+.|.++++++.+++ ++.|+.||++.+ 
T Consensus         3 ~~v~~l~~~~f~~~~~--~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~-~~~~~~vd~d~~-   78 (123)
T 1oaz_A            3 DKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-   78 (123)
T ss_dssp             CSCEECCSTTHHHHTT--SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTSC-
T ss_pred             CccEecChhhHHHHHH--hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcC-CeEEEEEECCCC-
Confidence            4688999999987542  4789999999999999              999999999999999987 799999999999 


Q ss_pred             hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .+++ ++|+|.++||+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        79 ~~l~-~~~~v~~~Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  121 (123)
T 1oaz_A           79 PGTA-PKYGIRGIPTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN  121 (123)
T ss_dssp             TTTG-GGGTCCBSSEEEEEESSSE-EEEEES-CCCHHHHHHHHTTT
T ss_pred             HHHH-HHcCCCccCEEEEEECCEE-EEEEeC-CCCHHHHHHHHHHH
Confidence            9999 9999999999999988873 334555 68999999999875

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.76  E-value=1.4e-18  Score=138.22  Aligned_cols=87  Identities=18%  Similarity=0.369  Sum_probs=79.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      ++++++|+||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++||+++|++|+. ...+.| .
T Consensus        41 ~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~~-~~l~-~~~~v~~~Pt~~~~~~G~~-~~~~~G-~  115 (128)
T 3ul3_B           41 KNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDKN-ESLA-RKFSVKSLPTIILLKNKTM-LARKDH-F  115 (128)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGGC-HHHH-HHTTCCSSSEEEEEETTEE-EEEESS-C
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HHcCCCCcCEEEEEECCEE-EEEecC-C
Confidence            789999999999999999999999999999986 799999999999 9999 9999999999999988873 444555 7


Q ss_pred             CCHHHHHHHHHH
Q 018045          348 RDVDSLMAFVDA  359 (361)
Q Consensus       348 ~~~~~l~~~i~~  359 (361)
                      .+.++|.++|++
T Consensus       116 ~~~~~l~~~l~~  127 (128)
T 3ul3_B          116 VSSNDLIALIKK  127 (128)
T ss_dssp             CCHHHHHHHHTT
T ss_pred             CCHHHHHHHHHh
Confidence            999999999976

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=6.2e-18  Score=154.17  Aligned_cols=107  Identities=22%  Similarity=0.483  Sum_probs=95.6

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--CCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--GDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--~~~~~l~~~~~~v~  325 (361)
                      ...|++|+.++|++++.  +.+++++|+|||+||++|+.+.|.|+++++.+++ .+.|+.|||+  .+ .++| ++|+|.
T Consensus        16 ~~~vv~lt~~~f~~~i~--~~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~-~~~~~~v~~d~~~~-~~l~-~~~~I~   90 (298)
T 3ed3_A           16 DPHISELTPKSFDKAIH--NTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDG-VVQVAAVNCDLNKN-KALC-AKYDVN   90 (298)
T ss_dssp             CTTCEECCHHHHHHHHT--SSSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTSTTT-HHHH-HHTTCC
T ss_pred             CCCeEEeCHHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHccC-CcEEEEEEccCccC-HHHH-HhCCCC
Confidence            45799999999999884  3688999999999999999999999999999987 7999999998  56 8999 999999


Q ss_pred             CCCeEEEEeCCCC----------------CeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSS----------------KPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~----------------~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|++|+.                ....|.| .++.+.|.+||.+.
T Consensus        91 ~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G-~r~~~~i~~fl~~~  140 (298)
T 3ed3_A           91 GFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSG-ARTLAPIVDFSLSR  140 (298)
T ss_dssp             BSSEEEEEECCCC-------------CCCEEEECCS-CCSHHHHHHHHHTT
T ss_pred             ccceEEEEECCceeecccccccccccccccceeecC-CcCHHHHHHHHHHh
Confidence            9999999999862                2678887 79999999999764

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.76  E-value=4.3e-18  Score=159.94  Aligned_cols=108  Identities=19%  Similarity=0.224  Sum_probs=95.3

Q ss_pred             ccCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhH------HHHHHHHHHhcCCCeEEEEEEcCCCchHHH
Q 018045          245 IFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAME------GSYVELADKLAGNGVKVGKFRADGDQKEYA  318 (361)
Q Consensus       245 ~~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~------p~~~~la~~~~~~~v~~~~vd~~~~~~~l~  318 (361)
                      .-..+.|.+|+.++|+++++   ++++++|.||||||++|+...      |.++++++.+++.++.|++|||+.+ +++|
T Consensus         9 ~~~~~~v~~lt~~~f~~~i~---~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~-~~l~   84 (367)
T 3us3_A            9 YDGVDRVINVNAKNYKNVFK---KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD-AAVA   84 (367)
T ss_dssp             CCCCCCCEECCTTTHHHHHH---HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTT-HHHH
T ss_pred             CCCCCccEECCHHHHHHHHh---hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCccc-HHHH
Confidence            33446799999999999987   789999999999999974433      7899999999865699999999999 9999


Q ss_pred             HHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          319 KQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       319 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                       ++|+|+++||+++|++|+  ++.|.| .++.+.|.+||++.
T Consensus        85 -~~~~V~~~PTl~~f~~G~--~~~y~G-~~~~~~i~~~i~~~  122 (367)
T 3us3_A           85 -KKLGLTEEDSIYVFKEDE--VIEYDG-EFSADTLVEFLLDV  122 (367)
T ss_dssp             -HHHTCCSTTEEEEEETTE--EEECCS-CCSHHHHHHHHHHH
T ss_pred             -HHcCCCcCceEEEEECCc--EEEeCC-CCCHHHHHHHHHHh
Confidence             999999999999999987  678988 79999999999763

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.76  E-value=5.5e-18  Score=134.15  Aligned_cols=105  Identities=19%  Similarity=0.263  Sum_probs=89.8

Q ss_pred             CCceec-CcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..|.++ +.++|++.+... .++++++|+||++||++|+.+.|.|+++++.++  ++.|+.||++.+ .+++ ++|+|.+
T Consensus        16 ~~v~~l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~~-~~l~-~~~~v~~   91 (124)
T 1xfl_A           16 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDEL-KSVA-SDWAIQA   91 (124)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTS-HHHH-HHTTCCS
T ss_pred             CcEEEeCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECccC-HHHH-HHcCCCc
Confidence            457788 668899887632 258899999999999999999999999999986  499999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.|  .+.++|.++|+++
T Consensus        92 ~Pt~~~~~~G~~-~~~~~G--~~~~~l~~~l~~~  122 (124)
T 1xfl_A           92 MPTFMFLKEGKI-LDKVVG--AKKDELQSTIAKH  122 (124)
T ss_dssp             SSEEEEEETTEE-EEEEES--CCHHHHHHHHHHH
T ss_pred             cCEEEEEECCEE-EEEEeC--CCHHHHHHHHHHh
Confidence            999999998873 334444  5899999999875

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.76  E-value=7.5e-18  Score=128.47  Aligned_cols=102  Identities=20%  Similarity=0.394  Sum_probs=87.6

Q ss_pred             ceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |.++++ ++|++.+. ...+++++|.||++||++|+.+.|.++++++.++  ++.|+.||++.+ ++++ ++|+|.++||
T Consensus         1 v~~i~~~~~~~~~l~-~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~-~~~~-~~~~v~~~Pt   75 (104)
T 2vim_A            1 MRVLATAADLEKLIN-ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQN-EEAA-AKYSVTAMPT   75 (104)
T ss_dssp             CEECCSHHHHHHHHH-TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTC-HHHH-HHTTCCSSSE
T ss_pred             CeecCCHHHHHHHHH-hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccCC-HHHH-HHcCCccccE
Confidence            356766 88988875 2368899999999999999999999999999986  499999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.|  .+.++|.++|+++
T Consensus        76 ~~~~~~g~~-~~~~~G--~~~~~l~~~l~~~  103 (104)
T 2vim_A           76 FVFIKDGKE-VDRFSG--ANETKLRETITRH  103 (104)
T ss_dssp             EEEEETTEE-EEEEES--SCHHHHHHHHHHH
T ss_pred             EEEEeCCcE-EEEEeC--CCHHHHHHHHHhh
Confidence            999998873 334444  5899999999886

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.76  E-value=2.7e-18  Score=133.86  Aligned_cols=101  Identities=20%  Similarity=0.346  Sum_probs=86.2

Q ss_pred             CceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      .+.++++ ++|+++++   ++++++|+||++||++|+.+.|.++++++.+++  +.|+.||++.+ .+++ ++|+|.++|
T Consensus        13 ~~~~~~~~~~~~~~~~---~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~~-~~l~-~~~~v~~~P   85 (114)
T 2oe3_A           13 SITKLTNLTEFRNLIK---QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDES-PDIA-KECEVTAMP   85 (114)
T ss_dssp             GSCBCCSHHHHHHHHH---HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTTC-HHHH-HHTTCCSBS
T ss_pred             heeecCCHHHHHHHHh---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCCC-HHHH-HHCCCCccc
Confidence            4555544 56777776   789999999999999999999999999999875  99999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| .. .++|.++|+++
T Consensus        86 t~~~~~~G~~-~~~~~G-~~-~~~l~~~l~~~  114 (114)
T 2oe3_A           86 TFVLGKDGQL-IGKIIG-AN-PTALEKGIKDL  114 (114)
T ss_dssp             EEEEEETTEE-EEEEES-SC-HHHHHHHHHTC
T ss_pred             EEEEEeCCeE-EEEEeC-CC-HHHHHHHHHhC
Confidence            9999998873 344555 45 99999999864

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.76  E-value=8.6e-18  Score=164.55  Aligned_cols=107  Identities=19%  Similarity=0.500  Sum_probs=97.6

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      .+.|..|+.++|++++.   ++++++|.||||||++|+.+.|.|+++++.+++.++.|++|||+.+ .++| ++|+|.++
T Consensus        13 ~~~v~~l~~~~f~~~~~---~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~-~~l~-~~~~v~~~   87 (504)
T 2b5e_A           13 DSAVVKLATDSFNEYIQ---SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN-QDLC-MEHNIPGF   87 (504)
T ss_dssp             TSSCEECCTTTHHHHHT---TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             CCCcEECCHHHHHHHHh---cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCC-HHHH-HhcCCCcC
Confidence            46799999999999886   7899999999999999999999999999999874599999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+.. ...|.| .++.+.|.+||++.
T Consensus        88 Pt~~~~~~g~~~~~~~~~G-~~~~~~l~~~l~~~  120 (504)
T 2b5e_A           88 PSLKIFKNSDVNNSIDYEG-PRTAEAIVQFMIKQ  120 (504)
T ss_dssp             SEEEEEETTCTTCEEECCS-CCSHHHHHHHHHHH
T ss_pred             CEEEEEeCCccccceeecC-CCCHHHHHHHHHHh
Confidence            999999998743 677887 79999999999864

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.76  E-value=3.2e-19  Score=143.76  Aligned_cols=104  Identities=16%  Similarity=0.424  Sum_probs=86.4

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC---
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG---  325 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~---  325 (361)
                      ..|..++.++|++.+. ...+++++|+|||+||++|+.+.|.|+++++.+++.++.|+.||++.+ ++++ ++|+|.   
T Consensus         7 ~~v~~l~~~~f~~~~~-~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~~~~-~~~~v~~~~   83 (137)
T 2dj0_A            7 GYIKYFNDKTIDEELE-RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRY-TDVS-TRYKVSTSP   83 (137)
T ss_dssp             SCCEECCTTHHHHHHH-HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTC-HHHH-HHTTCCCCS
T ss_pred             ceEEEccHhhHHHHHh-cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccC-HHHH-HHccCcccC
Confidence            4688999999999885 334569999999999999999999999999999754799999999999 9999 999999   


Q ss_pred             ---CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          326 ---SFPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       326 ---~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                         ++||+++|++|+. ...+.| ..+.++|.+||
T Consensus        84 ~~~~~Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l  116 (137)
T 2dj0_A           84 LTKQLPTLILFQGGKE-AMRRPQ-IDKKGRAVSWT  116 (137)
T ss_dssp             SSSCSSEEEEESSSSE-EEEESC-BCSSSCBCCCC
T ss_pred             CcCCCCEEEEEECCEE-EEEecC-cCchHHHHHHH
Confidence               9999999998874 334444 45555554444

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.75  E-value=5.2e-18  Score=137.10  Aligned_cols=104  Identities=23%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.+.+++.++|++.+.  +.++ ++|+||++||++|+.+.|.|+++++.+++ ++.|+.||++.+ .+++ ++|+|.++|
T Consensus        33 ~~v~~l~~~~~~~~~~--~~~~-vvv~f~~~~C~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~P  106 (140)
T 1v98_A           33 PWVVEADEKGFAQEVA--GAPL-TLVDFFAPWCGPCRLVSPILEELARDHAG-RLKVVKVNVDEH-PGLA-ARYGVRSVP  106 (140)
T ss_dssp             ------------------CCCE-EEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC-HHHH-HHTTCCSSS
T ss_pred             CccccCCHHHHHHHHH--cCCC-EEEEEECCCCHHHHHHHHHHHHHHHHccC-ceEEEEEECCCC-HHHH-HHCCCCccC
Confidence            4578899999998765  2344 99999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.+||+++
T Consensus       107 t~~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~  136 (140)
T 1v98_A          107 TLVLFRRGAP-VATWVG-ASPRRVLEERLRPY  136 (140)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEeCCcE-EEEEeC-CCCHHHHHHHHHHH
Confidence            9999998873 334555 68899999999875

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.75  E-value=3.2e-18  Score=161.76  Aligned_cols=106  Identities=22%  Similarity=0.484  Sum_probs=92.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-----CCeEEEEEEcCCCchHHHHHcCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-----NGVKVGKFRADGDQKEYAKQKLQ  323 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-----~~v~~~~vd~~~~~~~l~~~~~~  323 (361)
                      +.|..|++++|++++.   .+++++|.|||+||++|+.+.|.|+++++.++.     .++.|++|||+.+ .++| ++|+
T Consensus         5 ~~v~~l~~~~f~~~~~---~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~-~~l~-~~~~   79 (382)
T 2r2j_A            5 SEITSLDTENIDEILN---NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH-SDIA-QRYR   79 (382)
T ss_dssp             ---CBCCTTTHHHHHH---HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC-HHHH-HHTT
T ss_pred             CceEECCHHHHHHHHh---cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc-HHHH-HhcC
Confidence            4588999999999886   789999999999999999999999999999842     2599999999999 9999 9999


Q ss_pred             CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++||+++|++|+.....|.| .++.+.|.+||++.
T Consensus        80 v~~~Pt~~~f~~G~~~~~~~~G-~~~~~~l~~~i~~~  115 (382)
T 2r2j_A           80 ISKYPTLKLFRNGMMMKREYRG-QRSVKALADYIRQQ  115 (382)
T ss_dssp             CCEESEEEEEETTEEEEEECCS-CCSHHHHHHHHHHH
T ss_pred             CCcCCEEEEEeCCcEeeeeecC-cchHHHHHHHHHHh
Confidence            9999999999999842225877 79999999999864

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.75  E-value=7.4e-18  Score=132.68  Aligned_cols=105  Identities=18%  Similarity=0.250  Sum_probs=90.2

Q ss_pred             CCceecCcccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTLNRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..+..++.++|++.+.. ...+++++|+||++||++|+.+.|.|+++++.+++  +.|+.||++.+ .+++ ++|+|.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~~-~~~~-~~~~v~~~   88 (122)
T 2vlu_A           13 EVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDEL-KPIA-EQFSVEAM   88 (122)
T ss_dssp             CCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             cceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCCC-HHHH-HHcCCCcc
Confidence            34677789999998762 12588999999999999999999999999999875  99999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| .. .++|.++|+++
T Consensus        89 Pt~~~~~~G~~-~~~~~G-~~-~~~l~~~l~~~  118 (122)
T 2vlu_A           89 PTFLFMKEGDV-KDRVVG-AI-KEELTAKVGLH  118 (122)
T ss_dssp             SEEEEEETTEE-EEEEES-SC-HHHHHHHHHHH
T ss_pred             cEEEEEeCCEE-EEEEeC-cC-HHHHHHHHHHH
Confidence            99999998874 344555 55 99999999875

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.75  E-value=4e-18  Score=131.92  Aligned_cols=100  Identities=15%  Similarity=0.261  Sum_probs=86.6

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      +..++.++| +.+.   ++++++|+||++||++|+.+.|.++++++.++  ++.|+.||++.+ .+++ ++|+|.++||+
T Consensus         5 ~~~~~~~~f-~~~~---~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~~-~~l~-~~~~v~~~Pt~   76 (110)
T 2l6c_A            5 RDITTEAGM-AHFE---GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEAR-PELM-KELGFERVPTL   76 (110)
T ss_dssp             SBCGGGCSH-HHHT---TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGGC-HHHH-HHTTCCSSCEE
T ss_pred             eecCCHHHH-HHHH---cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcCC-HHHH-HHcCCcccCEE
Confidence            456788999 5554   67999999999999999999999999998876  499999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++|+. ...+.| ..+.++|.++|++.
T Consensus        77 ~~~~~G~~-v~~~~G-~~~~~~l~~~~~~~  104 (110)
T 2l6c_A           77 VFIRDGKV-AKVFSG-IMNPRELQALYASI  104 (110)
T ss_dssp             EEEESSSE-EEEEES-CCCHHHHHHHHHTC
T ss_pred             EEEECCEE-EEEEcC-CCCHHHHHHHHHHH
Confidence            99988883 344555 78999999999864

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.75  E-value=5.5e-18  Score=148.05  Aligned_cols=105  Identities=23%  Similarity=0.394  Sum_probs=93.8

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..+..+|.++|++.+.  +++++++|+|||+||++|+.+.|.|+++++.+++ .+.|+.||++.+ .+++ ++|+|.++|
T Consensus        12 ~~~~~lt~~~f~~~v~--~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~-~~l~-~~~~v~~~P   86 (222)
T 3dxb_A           12 DKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGIP   86 (222)
T ss_dssp             CCCEECCTTTHHHHHT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-TTTG-GGGTCCSBS
T ss_pred             CCceeCCHHHHHHHHH--hcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCCC-HHHH-HHcCCCcCC
Confidence            5689999999998542  3789999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        87 t~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  116 (222)
T 3dxb_A           87 TLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN  116 (222)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEECCeE-EEEecc-ccChHHHHHHHHhh
Confidence            9999998874 345555 78999999999875

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.75  E-value=8.2e-18  Score=138.18  Aligned_cols=104  Identities=27%  Similarity=0.424  Sum_probs=88.7

Q ss_pred             CCceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..+..++ .++|+++++. ..++++||+||++||++|+.+.|.|+++++.++  ++.|+.||++.+ ++++ ++|+|.++
T Consensus        12 ~~v~~l~~~~~~~~~~~~-~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~~-~~l~-~~~~v~~~   86 (153)
T 2wz9_A           12 AAVEEVGSAGQFEELLRL-KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEGV-PEVS-EKYEISSV   86 (153)
T ss_dssp             CCSEEECSHHHHHHHHHH-TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTS-HHHH-HHTTCCSS
T ss_pred             CCeEEcCCHHHHHHHHHh-cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCCC-HHHH-HHcCCCCC
Confidence            4678886 5889988861 138999999999999999999999999999985  599999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.|  .+.++|.++|+++
T Consensus        87 Pt~~~~~~G~~-~~~~~G--~~~~~l~~~i~~~  116 (153)
T 2wz9_A           87 PTFLFFKNSQK-IDRLDG--AHAPELTKKVQRH  116 (153)
T ss_dssp             SEEEEEETTEE-EEEEES--SCHHHHHHHHHHH
T ss_pred             CEEEEEECCEE-EEEEeC--CCHHHHHHHHHHH
Confidence            99999998773 333444  5788999999875

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.75  E-value=9.1e-18  Score=136.15  Aligned_cols=101  Identities=13%  Similarity=0.186  Sum_probs=84.1

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      +.++|++.+. ..++++++|+|||+||++|+.+.|.++++++.+++ ++.|+.||++.+ ++++ ++|+|.++||+++|+
T Consensus        10 ~~~~~~~~v~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-~v~~~~vd~d~~-~~~~-~~~~i~~~Pt~~~~~   85 (142)
T 1qgv_A           10 NGWQVDQAIL-SEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV-PDFN-KMYELYDPCTVMFFF   85 (142)
T ss_dssp             SHHHHHHHHH-TCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC-CTTT-TSSCSCSSCEEEEEE
T ss_pred             CHHHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEccccC-HHHH-HHcCCCCCCEEEEEE
Confidence            5678887664 12589999999999999999999999999999976 799999999999 9999 999999999999999


Q ss_pred             CCCCCee--------ecCCCCC-CHHHHHHHHHHh
Q 018045          335 KHSSKPI--------KYPSERR-DVDSLMAFVDAL  360 (361)
Q Consensus       335 ~g~~~~~--------~~~~~~~-~~~~l~~~i~~~  360 (361)
                      +|+....        ...| .. +.++|.++|+++
T Consensus        86 ~G~~v~~~~g~~~~~~~~g-~~~~~~~l~~~i~~~  119 (142)
T 1qgv_A           86 RNKHIMIDLGTGNNNKINW-AMEDKQEMVDIIETV  119 (142)
T ss_dssp             TTEEEEEECC------CCS-CCSCHHHHHHHHHHH
T ss_pred             CCcEEEEecCCCCcceeee-ecCcHHHHHHHHHHH
Confidence            9884322        2333 34 489999998864

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.74  E-value=5.1e-18  Score=134.53  Aligned_cols=106  Identities=12%  Similarity=0.227  Sum_probs=86.5

Q ss_pred             CceecCcccHH--HHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE--cCCCchHHHHHcCCCC
Q 018045          250 NLVTLNRTGME--NLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR--ADGDQKEYAKQKLQLG  325 (361)
Q Consensus       250 ~v~~l~~~~f~--~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd--~~~~~~~l~~~~~~v~  325 (361)
                      .+..++.++|+  +.+.....+++++|+||++||++|+.+.|.++++++.+++ ++.|+.||  ++.+ .+++ ++|+|.
T Consensus         5 ~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~v~~~~d~~-~~~~-~~~~v~   81 (126)
T 2l57_A            5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG-KFNIYYARLEEEKN-IDLA-YKYDAN   81 (126)
T ss_dssp             CSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS-SCEEEEEETTSSHH-HHHH-HHTTCC
T ss_pred             ccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC-CeEEEEEeCCCCch-HHHH-HHcCCc
Confidence            35556666665  1111234789999999999999999999999999999975 79999999  8888 9999 999999


Q ss_pred             CCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|+ +|+. ...+.| ..+.++|.++|+++
T Consensus        82 ~~Pt~~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  115 (126)
T 2l57_A           82 IVPTTVFLDKEGNK-FYVHQG-LMRKNNIETILNSL  115 (126)
T ss_dssp             SSSEEEEECTTCCE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCE-EEEecC-CCCHHHHHHHHHHH
Confidence            999999998 6763 344555 78999999999875

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.74  E-value=4.2e-18  Score=134.18  Aligned_cols=106  Identities=18%  Similarity=0.348  Sum_probs=91.2

Q ss_pred             CCCCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC
Q 018045          247 NSQNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       247 ~~~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      +...+..+++ ++|++++.   .+++++|.||++||++|+.+.|.++++++.+++.++.|+.||++.+ .+++ ++|+|.
T Consensus        13 ~~~~~~~i~~~~~f~~~l~---~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~-~~~~-~~~~v~   87 (121)
T 2j23_A           13 PRGSVQVISSYDQFKQVTG---GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQ-SQIA-QEVGIR   87 (121)
T ss_dssp             CCCCEEECCSHHHHHHHHS---SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTC-HHHH-HHHTCC
T ss_pred             CCcceEEcCCHHHHHHHHc---CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCC-HHHH-HHcCCC
Confidence            3456777765 88998885   8899999999999999999999999999988763499999999999 9999 999999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|++|+. ...+.| . +.++|.++|+++
T Consensus        88 ~~Pt~~~~~~G~~-~~~~~G-~-~~~~l~~~l~~~  119 (121)
T 2j23_A           88 AMPTFVFFKNGQK-IDTVVG-A-DPSKLQAAITQH  119 (121)
T ss_dssp             SSSEEEEEETTEE-EEEEES-S-CHHHHHHHHHHH
T ss_pred             cccEEEEEECCeE-EeeEcC-C-CHHHHHHHHHHh
Confidence            9999999998873 344555 5 899999999876

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.74  E-value=3e-18  Score=134.30  Aligned_cols=102  Identities=8%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-----hHHHHHcCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-----KEYAKQKLQ  323 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-----~~l~~~~~~  323 (361)
                      ..+..++.++|++.+.   .+++++|+|||+||++|+.+.|.++++++.++. .+.++  |++...     .+++ ++|+
T Consensus        12 ~~~~~~~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~--~~~~~~~~~~~~~~~-~~~~   84 (118)
T 1zma_A           12 KDLEVTTVVRAQEALD---KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFI--NSEEPSQLNDLQAFR-SRYG   84 (118)
T ss_dssp             TTSEECCHHHHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEE--ETTCGGGHHHHHHHH-HHHT
T ss_pred             hhhhcCCHHHHHHHHh---CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-eEEEE--ECCCcCcHHHHHHHH-HHcC
Confidence            4678889999999876   788999999999999999999999999998865 45554  444321     5788 8999


Q ss_pred             CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          324 LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      |.++||+++|++|+. ...+.| ..+.++|.+||++
T Consensus        85 i~~~Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l~k  118 (118)
T 1zma_A           85 IPTVPGFVHITDGQI-NVRCDS-SMSAQEIKDFAGL  118 (118)
T ss_dssp             CCSSCEEEEEETTEE-EEECCT-TCCHHHHHHHHTC
T ss_pred             CCCCCeEEEEECCEE-EEEecC-CCCHHHHHHHhhC
Confidence            999999999998874 344555 7899999999864

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.74  E-value=6.3e-18  Score=157.88  Aligned_cols=104  Identities=13%  Similarity=0.183  Sum_probs=95.0

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHH-------HHHHHHHhcCCCeEEEEEEcCCCchHHHHH
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-------YVELADKLAGNGVKVGKFRADGDQKEYAKQ  320 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~-------~~~la~~~~~~~v~~~~vd~~~~~~~l~~~  320 (361)
                      .+.|.+|+.++|++.+.   ++++++|+||||||+ |+.+.|.       |+++++.+++.++.|++|||+.+ .++| +
T Consensus        10 ~~~v~~l~~~~f~~~i~---~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~-~~l~-~   83 (350)
T 1sji_A           10 KDRVVSLTEKNFKQVLK---KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKE-AKLA-K   83 (350)
T ss_dssp             CCCCEEECHHHHHHHHT---TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTT-HHHH-H
T ss_pred             CCccEECCHHHHHHHHh---hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCC-HHHH-H
Confidence            45799999999999886   789999999999999 9999998       99999999864699999999999 9999 9


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+|+++||+++|++|+  ...|.| .++.+.|.+||++.
T Consensus        84 ~~~v~~~Pt~~~~~~g~--~~~~~G-~~~~~~l~~~i~~~  120 (350)
T 1sji_A           84 KLGFDEEGSLYVLKGDR--TIEFDG-EFAADVLVEFLLDL  120 (350)
T ss_dssp             HHTCCSTTEEEEEETTE--EEEECS-CCCHHHHHHHHHTT
T ss_pred             hcCCCccceEEEEECCc--EEEecC-CCCHHHHHHHHHHh
Confidence            99999999999999998  678887 69999999999864

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.74  E-value=4e-17  Score=144.60  Aligned_cols=107  Identities=19%  Similarity=0.431  Sum_probs=91.3

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEc--CCCchHHHHHcCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRA--DGDQKEYAKQKLQ  323 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~--~~~~~~l~~~~~~  323 (361)
                      +..|.+|+.++|++.+.  +.+++++|+|||+||++|+.+.|.|+++++.+++  ..+.|+.|||  +.+ .+++ ++|+
T Consensus        11 ~~~v~~l~~~~f~~~i~--~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~-~~l~-~~~~   86 (244)
T 3q6o_A           11 SDPLTLLQADTVRGAVL--GSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN-SAVC-RDFN   86 (244)
T ss_dssp             TSSSEEECTTTHHHHHS--SCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT-HHHH-HHTT
T ss_pred             CCCceeCChhhHHHHHh--hCCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh-HHHH-HHcC
Confidence            36799999999999774  4679999999999999999999999999999985  3799999999  567 9999 9999


Q ss_pred             CCCCCeEEEEeCCCCC----eeecCCCCCCHHHHHHHHHHh
Q 018045          324 LGSFPTILFFPKHSSK----PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~----~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |.++||+++|++|+..    .+.+.|  .+.+.|.++|.++
T Consensus        87 v~~~Pt~~~~~~g~~~~~g~~~~~~g--~~~~~l~~~i~~~  125 (244)
T 3q6o_A           87 IPGFPTVRFFXAFTXNGSGAVFPVAG--ADVQTLRERLIDA  125 (244)
T ss_dssp             CCSSSEEEEECTTCCSSSCEECCCTT--CCHHHHHHHHHHH
T ss_pred             CCccCEEEEEeCCCcCCCCeeEecCC--CCHHHHHHHHHHH
Confidence            9999999999986542    233333  6999999999764

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.74  E-value=3.4e-18  Score=137.45  Aligned_cols=101  Identities=12%  Similarity=0.185  Sum_probs=89.0

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc---------CCCchHHH
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---------DGDQKEYA  318 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~---------~~~~~~l~  318 (361)
                      ++.+..++.++|++.++   .  +++|+|||+||++|+.+.|.++++++.++   +.|+.||+         +.+ .+++
T Consensus        15 ~~~v~~l~~~~~~~~~~---~--~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~~~~~~~d~~-~~l~   85 (135)
T 3emx_A           15 DGRLIYITPEEFRQLLQ---G--DAILAVYSKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSLIGERELSAA-RLEM   85 (135)
T ss_dssp             TTEEEECCHHHHHHHHT---S--SEEEEEEETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTTCCHHHHHHH-HHHH
T ss_pred             cCceeecCHHHHHHHhC---C--cEEEEEECCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCchhhhhhhhh-HHHH
Confidence            45789999999999886   3  99999999999999999999999998874   89999999         777 8999


Q ss_pred             HHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          319 KQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       319 ~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                       ++|+|.++||+++|++|+. ...+.| ..+.+.+.++++++
T Consensus        86 -~~~~v~~~Pt~~~~~~G~~-v~~~~G-~~~~~~~~~~i~~~  124 (135)
T 3emx_A           86 -NKAGVEGTPTLVFYKEGRI-VDKLVG-ATPWSLKVEKAREI  124 (135)
T ss_dssp             -HHHTCCSSSEEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             -HHcCCceeCeEEEEcCCEE-EEEEeC-CCCHHHHHHHHHHH
Confidence             9999999999999998873 344555 79999999999876

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.73  E-value=1.2e-17  Score=129.42  Aligned_cols=105  Identities=22%  Similarity=0.306  Sum_probs=89.0

Q ss_pred             CCceec-CcccHHHHHhhcC-CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLDH-RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~~-~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..+..+ +.++|++.+.... .+++++|.||++||++|+.+.|.++++++.++  ++.|+.||++.+ .+++ ++|+|.+
T Consensus         4 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~-~~~~-~~~~v~~   79 (113)
T 1ti3_A            4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDEL-KAVA-EEWNVEA   79 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTTC-HHHH-HHHHCSS
T ss_pred             CceeEeccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEcccc-HHHH-HhCCCCc
Confidence            457777 6689998886332 48899999999999999999999999999986  499999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.|  .+.++|.++|+++
T Consensus        80 ~Pt~~~~~~G~~-~~~~~g--~~~~~l~~~l~~~  110 (113)
T 1ti3_A           80 MPTFIFLKDGKL-VDKTVG--ADKDGLPTLVAKH  110 (113)
T ss_dssp             TTEEEEEETTEE-EEEEEC--CCTTHHHHHHHHH
T ss_pred             ccEEEEEeCCEE-EEEEec--CCHHHHHHHHHHh
Confidence            999999998873 233444  5788999999875

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.73  E-value=1.5e-17  Score=134.12  Aligned_cols=105  Identities=14%  Similarity=0.240  Sum_probs=89.0

Q ss_pred             CCceec-CcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..+..+ +.++|++.+... ..+++++|+||++||++|+.+.|.++++++.++  ++.|+.||++.+ .+++ ++|+|.+
T Consensus        24 ~~~~~i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~~-~~~~-~~~~v~~   99 (139)
T 3d22_A           24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDEL-SDFS-ASWEIKA   99 (139)
T ss_dssp             TTCEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTS-HHHH-HHTTCCE
T ss_pred             CcEEEeCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCccc-HHHH-HHcCCCc
Confidence            456667 478999887533 258899999999999999999999999999985  499999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.| . +.++|.++|+++
T Consensus       100 ~Pt~~~~~~G~~-~~~~~G-~-~~~~l~~~l~~~  130 (139)
T 3d22_A          100 TPTFFFLRDGQQ-VDKLVG-A-NKPELHKKITAI  130 (139)
T ss_dssp             ESEEEEEETTEE-EEEEES-C-CHHHHHHHHHHH
T ss_pred             ccEEEEEcCCeE-EEEEeC-C-CHHHHHHHHHHH
Confidence            999999988873 334455 4 889999999865

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.73  E-value=3.1e-18  Score=138.66  Aligned_cols=102  Identities=10%  Similarity=0.135  Sum_probs=77.4

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCC--ChhHHhhHHHHHHHHHHhcCCCeE--EEEEEcCCCchHHHHHcCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKLAGNGVK--VGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~~~~~~v~--~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      .+..+++++|++++.   ..+.++|.|+++|  |++|+.+.|.|+++++.+ + ++.  |++||++.+ ++++ ++|+|.
T Consensus        18 ~~~~l~~~~f~~~i~---~~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d~~-~~la-~~~~V~   90 (142)
T 2es7_A           18 GWQPVEASTVDDWIK---RVGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLEQS-EAIG-DRFNVR   90 (142)
T ss_dssp             TCEECCCC-----------CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHHHH-HHHH-HTTTCC
T ss_pred             cCcccccccHHHHHH---hCCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECCCC-HHHH-HhcCCC
Confidence            688999999999886   6677999999987  999999999999999999 5 688  999999999 9999 999999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|++|+. ...+.| ..+.++|.++|+++
T Consensus        91 ~iPT~~~fk~G~~-v~~~~G-~~~~~~l~~~i~~~  123 (142)
T 2es7_A           91 RFPATLVFTDGKL-RGALSG-IHPWAELLTLMRSI  123 (142)
T ss_dssp             SSSEEEEESCC-----CEES-CCCHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCEE-EEEEeC-CCCHHHHHHHHHHH
Confidence            9999999998874 344555 68899999999864

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.73  E-value=2.7e-17  Score=128.98  Aligned_cols=103  Identities=20%  Similarity=0.341  Sum_probs=85.8

Q ss_pred             CCceec--CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL--NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l--~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..+..+  +.++|++.+.  +++++++|+||++||++|+.+.|.++++++.+ + ++.|+.||++.+ .+++ ++|+|.+
T Consensus         3 ~~v~~~~g~~~~~~~~~~--~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~-~v~~~~vd~~~~-~~~~-~~~~i~~   76 (118)
T 2f51_A            3 DPIVHFNGTHEALLNRIK--EAPGLVLVDFFATWCGPCQRLGQILPSIAEAN-K-DVTFIKVDVDKN-GNAA-DAYGVSS   76 (118)
T ss_dssp             CCSEEECSCHHHHHHHHH--HCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T-TSEEEEEETTTC-HHHH-HHTTCCS
T ss_pred             CcceEecCCHHHHHHHHH--hCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C-CeEEEEEECCCC-HHHH-HhcCCCC
Confidence            457777  5678885442  26899999999999999999999999999999 4 699999999999 9999 9999999


Q ss_pred             CCeEEEEeC----CCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPK----HSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~----g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++    |+. ...+.|  ...++|.+.|++.
T Consensus        77 ~Pt~~~~~~~~~~G~~-~~~~~G--~~~~~l~~~~~~~  111 (118)
T 2f51_A           77 IPALFFVKKEGNEIKT-LDQFVG--ADVSRIKADIEKF  111 (118)
T ss_dssp             SSEEEEEEEETTEEEE-EEEEES--CCHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCcceE-EEeecC--CCHHHHHHHHHHh
Confidence            999999987    653 334555  4567799998875

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=1.2e-17  Score=134.27  Aligned_cols=104  Identities=14%  Similarity=0.137  Sum_probs=86.0

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..|.+|+.++|++.+.....++++||+|||+||++|+.+.|.|+++++.+.  ++.|+.||++.. .    ++|+|.++|
T Consensus        10 g~v~~i~~~~~~~~v~~~~~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~~-~----~~~~i~~~P   82 (135)
T 2dbc_A           10 GELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNSC-I----EHYHDNCLP   82 (135)
T ss_dssp             CSCEECCHHHHHHHTTTCCSSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSSS-C----SSCCSSCCS
T ss_pred             CceEEcCHHHHHHHHHhcCCCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhcC-c----ccCCCCCCC
Confidence            468889999999987633345799999999999999999999999999985  499999999987 3    689999999


Q ss_pred             eEEEEeCCCCCeeecCCC------CCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSE------RRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~------~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.|.      ..+.++|.++|++.
T Consensus        83 t~~~~~~G~~-v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           83 TIFVYKNGQI-EGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             EEEEESSSSC-SEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             EEEEEECCEE-EEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence            9999998885 3333331      13789999999864

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.73  E-value=2.9e-17  Score=128.27  Aligned_cols=105  Identities=18%  Similarity=0.300  Sum_probs=88.9

Q ss_pred             CCceec-CcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..+..+ +.++|++.+... ..+++++|.||++||++|+.+.|.++++++.++  ++.|+.||++.+ .+++ ++|+|.+
T Consensus         6 ~~v~~i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~-~~~~-~~~~v~~   81 (118)
T 2vm1_A            6 GAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDEL-KDVA-EAYNVEA   81 (118)
T ss_dssp             CCEEECCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTTS-HHHH-HHTTCCS
T ss_pred             CceEEecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEcccC-HHHH-HHcCCCc
Confidence            457777 578899887632 147899999999999999999999999999986  499999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.|  .+.++|.++|+++
T Consensus        82 ~Pt~~~~~~g~~-~~~~~g--~~~~~l~~~l~~~  112 (118)
T 2vm1_A           82 MPTFLFIKDGEK-VDSVVG--GRKDDIHTKIVAL  112 (118)
T ss_dssp             BSEEEEEETTEE-EEEEES--CCHHHHHHHHHHH
T ss_pred             CcEEEEEeCCeE-EEEecC--CCHHHHHHHHHHH
Confidence            999999998873 333444  5889999999874

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.73  E-value=8.5e-18  Score=134.76  Aligned_cols=105  Identities=10%  Similarity=0.211  Sum_probs=87.5

Q ss_pred             CCCceecCc-ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          248 SQNLVTLNR-TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       248 ~~~v~~l~~-~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ...+.++++ ++|++++. ...++++||+|||+||++|+.+.|.|+++++.+   ++.|+.||++.+ .+++ ++|+|.+
T Consensus        19 ~~~v~~l~~~~~~~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~~-~~l~-~~~~v~~   92 (133)
T 3cxg_A           19 QSIYIELKNTGSLNQVFS-STQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDIH-PKLN-DQHNIKA   92 (133)
T ss_dssp             TEEEEECCCTTHHHHHHT-C-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTTC-HHHH-HHTTCCS
T ss_pred             CccEEEecChhHHHHHHH-hcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccch-HHHH-HhcCCCC
Confidence            356888875 88888875 234679999999999999999999999998876   389999999999 9999 9999999


Q ss_pred             CCeEEEEe--CCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFP--KHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~--~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|+  +|+.. ...+.| . +.++|.++|+++
T Consensus        93 ~Pt~~~~~~~~g~g~~~~~~~G-~-~~~~l~~~l~~~  127 (133)
T 3cxg_A           93 LPTFEFYFNLNNEWVLVHTVEG-A-NQNDIEKAFQKY  127 (133)
T ss_dssp             SSEEEEEEEETTEEEEEEEEES-C-CHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCeEEEEEEcC-C-CHHHHHHHHHHH
Confidence            99999996  77632 344555 4 899999999875

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.72  E-value=2.5e-17  Score=160.29  Aligned_cols=106  Identities=20%  Similarity=0.395  Sum_probs=95.4

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|.+|++++|++++...+.+++++|+|||+||++|+.+.|.|+++++.+++ .+.|++|||+.+ .++| ++|+|.++||
T Consensus         2 ~v~~l~~~~f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Pt   78 (481)
T 3f8u_A            2 DVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG-IVPLAKVDCTAN-TNTC-NKYGVSGYPT   78 (481)
T ss_dssp             CCEEECTTTHHHHTTCCSSSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCCEEEEETTTC-HHHH-HHTTCCEESE
T ss_pred             ceEEecHHHHHHHHHhCCCCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC-ceEEEEEECCCC-HHHH-HhcCCCCCCE
Confidence            588999999999886222339999999999999999999999999999988 699999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...|.| .++.+.|.+||++.
T Consensus        79 l~~~~~g~~-~~~~~G-~~~~~~l~~~~~~~  107 (481)
T 3f8u_A           79 LKIFRDGEE-AGAYDG-PRTADGIVSHLKKQ  107 (481)
T ss_dssp             EEEEETTEE-EEECCS-CSSHHHHHHHHHHH
T ss_pred             EEEEeCCce-eeeecC-ccCHHHHHHHHHhh
Confidence            999999863 677877 79999999999864

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.72  E-value=4.6e-17  Score=143.56  Aligned_cols=103  Identities=21%  Similarity=0.524  Sum_probs=94.0

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      .+..++.++|++++.   .+++++|+|||+||++|+.+.|.|+++++.+.+  .++.|+.||++.+ .+++ ++|+|.++
T Consensus       131 ~~~~~~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~v~~~  205 (241)
T 3idv_A          131 VTLVLTKENFDEVVN---DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAE-TDLA-KRFDVSGY  205 (241)
T ss_dssp             SSEECCTTTHHHHHH---HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             cceeccHHHHHHhhc---cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCC-HHHH-HHcCCccc
Confidence            578899999999887   778999999999999999999999999999976  2499999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+  .+.|.| .++.++|.+||++.
T Consensus       206 Pt~~~~~~g~--~~~~~g-~~~~~~l~~~l~~~  235 (241)
T 3idv_A          206 PTLKIFRKGR--PYDYNG-PREKYGIVDYMIEQ  235 (241)
T ss_dssp             SEEEEEETTE--EEECCS-CCSHHHHHHHHHHH
T ss_pred             CEEEEEECCe--EEEecC-CCCHHHHHHHHHhh
Confidence            9999999987  677887 79999999999864

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=99.70  E-value=2e-16  Score=139.33  Aligned_cols=102  Identities=17%  Similarity=0.322  Sum_probs=90.4

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEE--CCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCC-----CchHHH
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLY--APWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADG-----DQKEYA  318 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~--a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~-----~~~~l~  318 (361)
                      ...|..|++++|++++.   .+++|||.||  ||||+    +.|.|+++++.+.+  .++.|++|||+.     + +++|
T Consensus        15 ~~~v~~Lt~~nF~~vi~---~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n-~~la   86 (248)
T 2c0g_A           15 CTGCVDLDELSFEKTVE---RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELEN-KALG   86 (248)
T ss_dssp             CTTCEECCTTTHHHHHT---TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTT-HHHH
T ss_pred             CCCcEECCHHHHHHHHh---cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccccccc-HHHH
Confidence            35689999999999775   7889999999  99998    99999999999953  379999999998     7 9999


Q ss_pred             HHcCCCC--CCCeEEEEeCCC-CCeeec--CCCCCCHHHHHHHHHHh
Q 018045          319 KQKLQLG--SFPTILFFPKHS-SKPIKY--PSERRDVDSLMAFVDAL  360 (361)
Q Consensus       319 ~~~~~v~--~~Pt~~~~~~g~-~~~~~~--~~~~~~~~~l~~~i~~~  360 (361)
                       ++|+|.  ++||+++|+ |+ ..+..|  .| .++.+.|.+||++.
T Consensus        87 -~~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G-~~~~~~L~~fi~~~  130 (248)
T 2c0g_A           87 -DRYKVDDKNFPSIFLFK-GNADEYVQLPSHV-DVTLDNLKAFVSAN  130 (248)
T ss_dssp             -HHTTCCTTSCCEEEEES-SSSSSEEECCTTS-CCCHHHHHHHHHHH
T ss_pred             -HHhCCCcCCCCeEEEEe-CCcCcceeecccC-CCCHHHHHHHHHHh
Confidence             999999  999999999 87 346777  76 69999999999864

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.70  E-value=1.5e-16  Score=149.16  Aligned_cols=108  Identities=23%  Similarity=0.555  Sum_probs=94.2

Q ss_pred             cCCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCC
Q 018045          246 FNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQL  324 (361)
Q Consensus       246 ~~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v  324 (361)
                      .....|..|+.++|++++.  +.+++++|+||||||++|+.+.|.|+++++.+++ .++.++.||++.+ .  + ++|+|
T Consensus       246 ~~~~~v~~l~~~~f~~~~~--~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~-~--~-~~~~v  319 (361)
T 3uem_A          246 WDKQPVKVLVGKNFEDVAF--DEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTAN-E--V-EAVKV  319 (361)
T ss_dssp             TTTSSSEEECTTTHHHHHT--CTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTC-B--C-SSCCC
T ss_pred             cccCCcEEeecCchhhhcc--cCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCcc-c--h-hhcCC
Confidence            3456799999999999873  4789999999999999999999999999999987 2699999999988 4  6 79999


Q ss_pred             CCCCeEEEEeCC-CCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFPKH-SSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~~g-~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++||+++|++| +..+..|.| .++.++|.+||++.
T Consensus       320 ~~~Pt~~~~~~~~~~~~~~~~G-~~~~~~l~~~l~~~  355 (361)
T 3uem_A          320 HSFPTLKFFPASADRTVIDYNG-ERTLDGFKKFLESG  355 (361)
T ss_dssp             CSSSEEEEECSSSSCCCEECCS-CSSHHHHHHHHTTT
T ss_pred             cccCeEEEEECCCCcceeEecC-CCCHHHHHHHHHhc
Confidence            999999999766 434788887 79999999999763

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.68  E-value=1.7e-16  Score=126.91  Aligned_cols=100  Identities=18%  Similarity=0.298  Sum_probs=81.8

Q ss_pred             ccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHH--HHHHHhcCCCeEEEEEEc---CCCchHHHHHcCCC---CCC
Q 018045          257 TGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYV--ELADKLAGNGVKVGKFRA---DGDQKEYAKQKLQL---GSF  327 (361)
Q Consensus       257 ~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~--~la~~~~~~~v~~~~vd~---~~~~~~l~~~~~~v---~~~  327 (361)
                      .+|++.+.. ...+++++|+||++||++|+.+.|.|+  ++++.+++ ++.++.||+   +.+ .+++ ++|+|   .++
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~~~~~-~~l~-~~~~v~~~~~~   92 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGNFDRN-LELS-QAYGDPIQDGI   92 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTTTTSS-HHHH-HHTTCGGGGCS
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCcccch-HHHH-HHhCCccCCcc
Confidence            445544432 136899999999999999999999999  99999976 799999999   888 9999 99999   999


Q ss_pred             CeEEEE-eCCCCCeeecCCC------CCCHHHHHHHHHHh
Q 018045          328 PTILFF-PKHSSKPIKYPSE------RRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~-~~g~~~~~~~~~~------~~~~~~l~~~i~~~  360 (361)
                      ||+++| ++|+. ...+.|+      ..+.+++.+||+++
T Consensus        93 Pt~~~~d~~G~~-~~~~~g~~~~~~~~~~~~~l~~~l~~l  131 (133)
T 3fk8_A           93 PAVVVVNSDGKV-RYTTKGGELANARKMSDQGIYDFFAKI  131 (133)
T ss_dssp             SEEEEECTTSCE-EEECCSCTTTTGGGSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCCE-EEEecCCcccccccCCHHHHHHHHHHh
Confidence            999999 67763 3333331      47899999999986

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.67  E-value=9.4e-17  Score=122.30  Aligned_cols=100  Identities=11%  Similarity=0.101  Sum_probs=83.5

Q ss_pred             CCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCC
Q 018045          249 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQ  323 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~  323 (361)
                      .....| +.++|+++++   .+++++|+|+|+||++|+.+.|.|+++++.  + ++.|++||++++ ++    ++ .+|+
T Consensus         6 ~~~~~i~s~e~f~~ii~---~~~~vvi~khatwCgpc~~~~~~~e~~~~~--~-~v~~~~vdVde~-r~~Sn~IA-~~~~   77 (112)
T 3iv4_A            6 GVAIKLSSIDQFEQVIE---ENKYVFVLKHSETCPISANAYDQFNKFLYE--R-DMDGYYLIVQQE-RDLSDYIA-KKTN   77 (112)
T ss_dssp             GCEEECCSHHHHHHHHH---HCSEEEEEEECTTCHHHHHHHHHHHHHHHH--H-TCCEEEEEGGGG-HHHHHHHH-HHHT
T ss_pred             cceeecCCHHHHHHHHh---cCCCEEEEEECCcCHhHHHHHHHHHHHhcc--C-CceEEEEEeecC-chhhHHHH-HHhC
Confidence            455666 5577999887   699999999999999999999999999985  3 699999999998 77    78 9999


Q ss_pred             CCC-CCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          324 LGS-FPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       324 v~~-~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                      |++ .|++++|++|+..-..-. +..+.+.|.+.|
T Consensus        78 V~h~sPq~il~k~G~~v~~~SH-~~I~~~~l~~~~  111 (112)
T 3iv4_A           78 VKHESPQAFYFVNGEMVWNRDH-GDINVSSLAQAE  111 (112)
T ss_dssp             CCCCSSEEEEEETTEEEEEEEG-GGCSHHHHHHHT
T ss_pred             CccCCCeEEEEECCEEEEEeec-cccCHHHHHHhh
Confidence            995 999999999995333233 368888888765

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=99.67  E-value=5e-16  Score=136.33  Aligned_cols=102  Identities=17%  Similarity=0.347  Sum_probs=90.6

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEEC--CCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcC-----CCchHHHHH
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYA--PWCQFCQAMEGSYVELADKLAG-NGVKVGKFRAD-----GDQKEYAKQ  320 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a--~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~-----~~~~~l~~~  320 (361)
                      ..|..|++++|++++.   .+++|||.|||  |||+    +.|.|+++++.+.+ .++.|++||++     .+ +++| +
T Consensus         5 ~~v~~Lt~~nF~~~i~---~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~-~~l~-~   75 (240)
T 2qc7_A            5 KGALPLDTVTFYKVIP---KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLN-MELS-E   75 (240)
T ss_dssp             TTCEECCTTHHHHHGG---GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCS-HHHH-H
T ss_pred             CCceECCHHHHHHHHc---CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhh-HHHH-H
Confidence            4689999999999875   78899999999  9999    99999999999974 37999999954     47 9999 9


Q ss_pred             cCCCC--CCCeEEEEeCCC-CCeeecCCCCCCHHHHHHHHHHh
Q 018045          321 KLQLG--SFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~--~~Pt~~~~~~g~-~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+|.  ++||+++|++|+ ..+..|.| .++.+.|.+||++.
T Consensus        76 ~~~V~~~~~PTl~~f~~G~~~~~~~y~G-~~~~~~L~~fi~~~  117 (240)
T 2qc7_A           76 KYKLDKESYPVFYLFRDGDFENPVPYTG-AVKVGAIQRWLKGQ  117 (240)
T ss_dssp             HTTCCGGGCSEEEEEETTCSSCCEECCS-CSCHHHHHHHHHHT
T ss_pred             HcCCCCCCCCEEEEEeCCCcCcceeecC-CCCHHHHHHHHHHh
Confidence            99999  999999999998 34678887 79999999999864

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.67  E-value=5.2e-16  Score=151.26  Aligned_cols=108  Identities=18%  Similarity=0.364  Sum_probs=92.1

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCC--CchHHHHHcCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADG--DQKEYAKQKLQ  323 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~--~~~~l~~~~~~  323 (361)
                      +..|.+|+.++|++.+.  +.+++++|+|||+||++|+.+.|.|+++++.+++  ..+.|+.|||+.  + .+++ ++|+
T Consensus        11 ~~~V~~Lt~~~f~~~v~--~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~-~~l~-~~~~   86 (519)
T 3t58_A           11 SDPLTLLDADSVRPTVL--GSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN-SAVC-REFN   86 (519)
T ss_dssp             TSSSEEECTTTHHHHHS--SCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG-HHHH-HHTT
T ss_pred             CCCcEECChHHHHHHHH--hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc-HHHH-HHcC
Confidence            35799999999998764  3679999999999999999999999999999986  369999999964  6 8999 9999


Q ss_pred             CCCCCeEEEEeCCCC---CeeecCCCCCCHHHHHHHHHHh
Q 018045          324 LGSFPTILFFPKHSS---KPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~---~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |.++||+++|++|+.   ....+.| ..+.+.|.++|+++
T Consensus        87 V~~~PTl~~f~~g~~~G~~~~~~~g-~~~~~~L~~~l~~~  125 (519)
T 3t58_A           87 IAGFPTVRFFQAFTKNGSGATLPGA-GANVQTLRMRLIDA  125 (519)
T ss_dssp             CCSBSEEEEECTTCCSCCCEEECCS-SCCHHHHHHHHHHH
T ss_pred             CcccCEEEEEcCcccCCCceeEecC-CCCHHHHHHHHHHH
Confidence            999999999986443   2344555 58999999999764

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.67  E-value=2.8e-16  Score=137.25  Aligned_cols=103  Identities=11%  Similarity=0.141  Sum_probs=88.6

Q ss_pred             ceecCcccHHHHHhhcCCCCcE-EEEEECCCChhHHhhHHHHHHHHHHhcC---CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          251 LVTLNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~---~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      +..+++++|+.+..   .++++ +|.|||+||++|+.+.|.++++++.+++   .++.|+.||++.+ .+++ ++|+|.+
T Consensus       118 ~~~l~~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~v~~  192 (226)
T 1a8l_A          118 ETNLMDETKQAIRN---IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-PEWA-DQYNVMA  192 (226)
T ss_dssp             CCCCCHHHHHHHTT---CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-HHHH-HHTTCCS
T ss_pred             CCCCCHHHHHHHHh---cCCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccC-HHHH-HhCCCcc
Confidence            44578888888754   56677 9999999999999999999999999971   2799999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.| ..+.++|.+||+++
T Consensus       193 ~Pt~~~~~~G~~-~~~~~G-~~~~~~l~~~l~~~  224 (226)
T 1a8l_A          193 VPKIVIQVNGED-RVEFEG-AYPEKMFLEKLLSA  224 (226)
T ss_dssp             SCEEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             cCeEEEEeCCce-eEEEcC-CCCHHHHHHHHHHh
Confidence            999999998874 455666 78999999999875

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.49  E-value=4.1e-18  Score=130.16  Aligned_cols=104  Identities=25%  Similarity=0.429  Sum_probs=90.1

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .|.+++.++|++.+.  +.+++++|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++||
T Consensus         2 ~v~~l~~~~~~~~~~--~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~~-~~~~-~~~~v~~~Pt   76 (106)
T 2yj7_A            2 SVIEVTDENFEQEVL--KSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDEN-PNTA-AQYGIRSIPT   76 (106)
Confidence            367889999986552  3788999999999999999999999999999986 799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| ..+.++|.++|+++
T Consensus        77 ~~~~~~g~~-~~~~~g-~~~~~~l~~~l~~~  105 (106)
T 2yj7_A           77 LLLFKNGQV-VDRLVG-AQPKEALKERIDKH  105 (106)
Confidence            999988773 344555 68899999999875

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.67  E-value=1.7e-16  Score=125.33  Aligned_cols=103  Identities=12%  Similarity=0.234  Sum_probs=86.5

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECC-------CChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-------CCCch
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAP-------WCQFCQAMEGSYVELADKLAGNGVKVGKFRA-------DGDQK  315 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~-------wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-------~~~~~  315 (361)
                      .+...+.++|++.+.. ..+++++|+|||+       ||++|+.+.|.++++++.+++ ++.|+.||+       +.+ .
T Consensus         6 ~v~~~~~~~~~~~~~~-~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~~~~~~~d~~-~   82 (123)
T 1wou_A            6 EVSVSGFEEFHRAVEQ-HNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPN-N   82 (123)
T ss_dssp             EEEEESHHHHHHHHHT-TTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTT-C
T ss_pred             eEEeccHHHHHHHHHH-hCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECCCchhhhchh-H
Confidence            3556678899988761 1389999999999       999999999999999999876 799999999       677 8


Q ss_pred             HHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          316 EYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       316 ~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +++ ++|+|.++||+++|+++.. ...+.+  .+.+.|.+||++
T Consensus        83 ~~~-~~~~i~~~Pt~~~~~~~~~-~~g~~~--~~~~~l~~~i~~  122 (123)
T 1wou_A           83 DFR-KNLKVTAVPTLLKYGTPQK-LVESEC--LQANLVEMLFSE  122 (123)
T ss_dssp             HHH-HHHCCCSSSEEEETTSSCE-EEGGGG--GCHHHHHHHHHC
T ss_pred             HHH-HHCCCCeeCEEEEEcCCce-Eecccc--CCHHHHHHHHhc
Confidence            999 8999999999999988653 344443  678999999875

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=2.4e-16  Score=125.38  Aligned_cols=105  Identities=15%  Similarity=0.246  Sum_probs=86.2

Q ss_pred             ceecCcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCC--CchHHHHHcCCC
Q 018045          251 LVTLNRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADG--DQKEYAKQKLQL  324 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~--~~~~l~~~~~~v  324 (361)
                      ...++..+|++.+... ..+++++|+||++||++|+.+.|.+   +.+++.++. ++.++.||++.  + ..++ ++|+|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-~~~~-~~~~v   84 (130)
T 2kuc_A            8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEKGEG-VELR-KKYGV   84 (130)
T ss_dssp             CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSSTTH-HHHH-HHTTC
T ss_pred             CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCCcch-HHHH-HHcCC
Confidence            4556788898876432 2588999999999999999999999   788877765 68999999984  5 7899 99999


Q ss_pred             CCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++||+++| ++|+. ...+.| ..+.++|.++|+++
T Consensus        85 ~~~Pt~~~~d~~G~~-~~~~~G-~~~~~~l~~~l~~~  119 (130)
T 2kuc_A           85 HAYPTLLFINSSGEV-VYRLVG-AEDAPELLKKVKLG  119 (130)
T ss_dssp             CSSCEEEEECTTSCE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcE-EEEecC-CCCHHHHHHHHHHH
Confidence            999999999 56663 345555 68999999999875

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.66  E-value=7.1e-17  Score=140.12  Aligned_cols=105  Identities=17%  Similarity=0.240  Sum_probs=88.6

Q ss_pred             CCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..|.++ +.++|.+.+.....+++|||+||++||++|+.+.|.|.++++.+.  ++.|++||++ + +.++ .+|+|.++
T Consensus        99 g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~~-~-~~l~-~~~~i~~~  173 (217)
T 2trc_P           99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRAS-N-TGAG-DRFSSDVL  173 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEHH-H-HTCS-TTSCGGGC
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEECC-c-HHHH-HHCCCCCC
Confidence            458888 889999988644446899999999999999999999999999995  5999999999 6 8899 89999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCC-------HHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRD-------VDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~-------~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| ..+       .++|..||.+.
T Consensus       174 PTl~~~~~G~~-v~~~~G-~~~~~g~~~~~~~Le~~L~~~  211 (217)
T 2trc_P          174 PTLLVYKGGEL-ISNFIS-VAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             SEEEEEETTEE-EEEETT-GGGGSCSSCCHHHHHHHHHTT
T ss_pred             CEEEEEECCEE-EEEEeC-CcccCcccCCHHHHHHHHHHc
Confidence            99999998874 334444 333       59999999864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.66  E-value=3.8e-16  Score=125.19  Aligned_cols=100  Identities=21%  Similarity=0.369  Sum_probs=83.0

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcC----CCchHHHHHcCCCCCC
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRAD----GDQKEYAKQKLQLGSF  327 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~----~~~~~l~~~~~~v~~~  327 (361)
                      +.++|+..+... .++++||+||++||++|+.+.|.+   .++++.+++  +.++.||++    .+ .+++ ++|+|.++
T Consensus        18 ~~~~~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~~--~~~~~vd~~~~~~~~-~~l~-~~~~v~~~   92 (134)
T 2fwh_A           18 TVDELNQALVEA-KGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD--TVLLQANVTANDAQD-VALL-KHLNVLGL   92 (134)
T ss_dssp             SHHHHHHHHHHH-TTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT--SEEEEEECTTCCHHH-HHHH-HHTTCCSS
T ss_pred             CHHHHHHHHHHh-cCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC--cEEEEEeCCCCcchH-HHHH-HHcCCCCC
Confidence            556777766522 389999999999999999999999   999999875  999999994    45 7899 99999999


Q ss_pred             CeEEEE-eCCCCCe-eecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFF-PKHSSKP-IKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~-~~g~~~~-~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++| ++|+... ..+.| ..+.++|.++|+++
T Consensus        93 Pt~~~~d~~G~~v~~~~~~G-~~~~~~l~~~l~~~  126 (134)
T 2fwh_A           93 PTILFFDGQGQEHPQARVTG-FMDAETFSAHLRDR  126 (134)
T ss_dssp             SEEEEECTTSCBCGGGCBCS-CCCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCEeeeeeeee-ccCHHHHHHHHHhc
Confidence            999999 6776311 35666 78999999999875

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=99.66  E-value=3.8e-16  Score=125.09  Aligned_cols=102  Identities=14%  Similarity=0.225  Sum_probs=89.6

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC--C
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS--F  327 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~--~  327 (361)
                      -|.++|.++|++++.   .+.+++|+|||+ |++|+.+.|.++++|++|++ .+.|++||++++ +.++ ++|+|++  +
T Consensus         7 lv~~~t~~~f~~~~~---~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~g-k~~f~~vd~d~~-~~~a-~~~gi~~~~i   79 (133)
T 2djk_A            7 LIGEIGPETYSDYMS---AGIPLAYIFAET-AEERKELSDKLKPIAEAQRG-VINFGTIDAKAF-GAHA-GNLNLKTDKF   79 (133)
T ss_dssp             CSEECCHHHHHHHHH---TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTT-TSEEEEECTTTT-GGGT-TTTTCCSSSS
T ss_pred             ceeccChHHHHHHhc---CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCC-eEEEEEEchHHh-HHHH-HHcCCCcccC
Confidence            478899999998875   788999999999 89999999999999999988 899999999999 8999 9999999  9


Q ss_pred             CeEEEEeC--CCCCeeecC-CCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPK--HSSKPIKYP-SERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~--g~~~~~~~~-~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++  |+  ..... .|..+.+.|.+||+++
T Consensus        80 Ptl~i~~~~~g~--~~~~~~~g~~~~~~l~~fi~~~  113 (133)
T 2djk_A           80 PAFAIQEVAKNQ--KFPFDQEKEITFEAIKAFVDDF  113 (133)
T ss_dssp             SEEEEECTTTCC--BCCCCSSSCCCHHHHHHHHHHH
T ss_pred             CEEEEEecCcCc--ccCCCCccccCHHHHHHHHHHH
Confidence            99999987  54  34443 1378999999999865

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.64  E-value=1.5e-15  Score=147.72  Aligned_cols=108  Identities=24%  Similarity=0.589  Sum_probs=95.9

Q ss_pred             CCCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC-CeEEEEEEcCCCchHHHHHcCCCC
Q 018045          247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       247 ~~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      ....|..++.++|++++.  +++++++|+|||+||++|+.+.|.|+++++.+++. ++.|++||++.+  +++ ++|+|.
T Consensus       350 ~~~~v~~~~~~~~~~~~~--~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~--~~~-~~~~v~  424 (481)
T 3f8u_A          350 NDGPVKVVVAENFDEIVN--NENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN--DVP-SPYEVR  424 (481)
T ss_dssp             CCSSSEEECTTTHHHHHT--CTTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS--CCC-TTCCCC
T ss_pred             CCCCeEEecccCHHHHhh--cCCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch--hhH-hhCCCc
Confidence            346788999999999875  35899999999999999999999999999999873 799999999988  788 899999


Q ss_pred             CCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|++|+.. +..+.| .++.++|.+||++.
T Consensus       425 ~~Pt~~~~~~~~~~~~~~~~G-~~~~~~l~~~l~~~  459 (481)
T 3f8u_A          425 GFPTIYFSPANKKLNPKKYEG-GRELSDFISYLQRE  459 (481)
T ss_dssp             SSSEEEEECTTCTTSCEECCS-CCSHHHHHHHHHHH
T ss_pred             ccCEEEEEeCCCeEeeeEeCC-CCCHHHHHHHHHHh
Confidence            99999999988863 678887 69999999999864

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.64  E-value=3.5e-16  Score=137.67  Aligned_cols=106  Identities=17%  Similarity=0.229  Sum_probs=87.6

Q ss_pred             CCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      +.|.+| +.++|.+.+.....+++|||+|||+||++|+.+.|.|.++++.+.+  +.|++||++.  ..++ .+|+|.++
T Consensus       112 G~V~ei~s~~~f~~~v~~~~~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~--v~f~kVd~d~--~~l~-~~~~I~~~  186 (245)
T 1a0r_P          112 GFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAAEYPM--VKFCKIKASN--TGAG-DRFSSDVL  186 (245)
T ss_dssp             CSEEECCSHHHHHHHHHSSCTTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT--SEEEEEEHHH--HCCT-TSSCTTTC
T ss_pred             CeEEEeCCHHHHHHHHHHhcCCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC--CEEEEEeCCc--HHHH-HHCCCCCC
Confidence            458888 7899999886334588999999999999999999999999999975  9999999975  4678 89999999


Q ss_pred             CeEEEEeCCCCCeeecCC------CCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPS------ERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~------~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.|      ..++.+.|..||.+.
T Consensus       187 PTll~~~~G~~-v~~~vG~~~~~g~~~~~e~Le~~L~~~  224 (245)
T 1a0r_P          187 PTLLVYKGGEL-LSNFISVTEQLAEEFFTGDVESFLNEY  224 (245)
T ss_dssp             SEEEEEETTEE-EEEETTGGGGSCTTCCHHHHHHHHHTT
T ss_pred             CEEEEEECCEE-EEEEeCCcccccccccHHHHHHHHHHc
Confidence            99999998874 222333      235788999999764

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.64  E-value=4.7e-16  Score=159.99  Aligned_cols=105  Identities=22%  Similarity=0.482  Sum_probs=89.1

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ...|..|+.++|+++++   ++++++|+|||+||++|+.+.|.|+++++.+++ .+.|++|||+.+ +++| ++|+|.++
T Consensus       115 ~~~v~~l~~~~f~~~i~---~~~~~lv~Fya~wC~~C~~~~p~~~~~a~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~  188 (780)
T 3apo_A          115 DPEIITLERREFDAAVN---SGELWFVNFYSPGSSHSHDLAPTWREFAKEVDG-LLRIGAVNCGDD-RMLC-RMKGVNSY  188 (780)
T ss_dssp             CTTEEECCHHHHHHHHT---SSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTC-SSCC---------
T ss_pred             CcceeeechHhHHhhhc---CCCcEEEEEeCCCCcchhHhhHHHHHHHHHhcC-ceEEEEEeCCCc-HHHH-HHcCCcee
Confidence            35799999999999986   899999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...|.| .++.+.|.+||.+.
T Consensus       189 Pt~~~~~~g~~-~~~~~G-~~~~~~l~~~l~~~  219 (780)
T 3apo_A          189 PSLFIFRSGMA-AVKYNG-DRSKESLVAFAMQH  219 (780)
T ss_dssp             CEEEEECTTSC-CEECCS-CSCHHHHHHHHHTT
T ss_pred             eeEEEEeCCcE-eeEecC-CCCHHHHHHHHHHh
Confidence            99999999885 567877 79999999999864

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.63  E-value=5.5e-17  Score=129.01  Aligned_cols=105  Identities=21%  Similarity=0.313  Sum_probs=88.3

Q ss_pred             CCceec-CcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ..+.++ +.++|++.+... .++++++|+||++||++|+.+.|.|+++++.++  ++.|+.||++.+ .+++ ++|+|.+
T Consensus        14 ~~~~~i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~~-~~~~-~~~~v~~   89 (130)
T 1wmj_A           14 GVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDEL-KEVA-EKYNVEA   89 (130)
T ss_dssp             SSSBCCSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTTS-GGGH-HHHTCCS
T ss_pred             cceEEcCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccch-HHHH-HHcCCCc
Confidence            467778 458899887632 258899999999999999999999999999986  499999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.|  .+.++|.++|+++
T Consensus        90 ~Pt~~~~~~g~~-~~~~~g--~~~~~l~~~l~~~  120 (130)
T 1wmj_A           90 MPTFLFIKDGAE-ADKVVG--ARKDDLQNTIVKH  120 (130)
T ss_dssp             SCCCCBCTTTTC-CBCCCT--TCTTTHHHHHHHH
T ss_pred             cceEEEEeCCeE-EEEEeC--CCHHHHHHHHHHH
Confidence            999999988873 333444  5778999998865

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.62  E-value=7.4e-16  Score=112.84  Aligned_cols=82  Identities=16%  Similarity=0.293  Sum_probs=74.1

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD  349 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~  349 (361)
                      .+.++.||++||++|+.+.|.++++++.+++ ++.|+.||++++ .+++ ++|+|.++||+++  +|+  . .+.| ..+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt~~~--~G~--~-~~~G-~~~   73 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMEN-PQKA-MEYGIMAVPTIVI--NGD--V-EFIG-APT   73 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSS-CCTT-TSTTTCCSSEEEE--TTE--E-ECCS-SSS
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCCC-HHHH-HHCCCcccCEEEE--CCE--E-eeec-CCC
Confidence            4689999999999999999999999999986 799999999999 8999 9999999999999  666  4 6666 678


Q ss_pred             HHHHHHHHHHh
Q 018045          350 VDSLMAFVDAL  360 (361)
Q Consensus       350 ~~~l~~~i~~~  360 (361)
                      .++|.++|+++
T Consensus        74 ~~~l~~~l~~~   84 (85)
T 1fo5_A           74 KEALVEAIKKR   84 (85)
T ss_dssp             SHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.62  E-value=1.2e-15  Score=127.66  Aligned_cols=106  Identities=11%  Similarity=0.134  Sum_probs=81.4

Q ss_pred             CceecCcccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCchHH--------
Q 018045          250 NLVTLNRTGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQKEY--------  317 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~~~l--------  317 (361)
                      ....++..+|++.+... .++++++|+|||+||++|+.|++.+   .++.+.+++ ++.|+.||++.+ .++        
T Consensus        27 ~~~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~~-~~~~~~~~~~~  104 (172)
T 3f9u_A           27 NEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDNK-TPLTEPVKIME  104 (172)
T ss_dssp             -CCCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTCC-CEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCcc-cccchhhhhhh
Confidence            34556677888776432 3689999999999999999986655   677777765 699999999877 543        


Q ss_pred             ------------------HHHcCCCCCCCeEEEE-eCCCCCeeecCCCCCC-HHHHHHHHHHh
Q 018045          318 ------------------AKQKLQLGSFPTILFF-PKHSSKPIKYPSERRD-VDSLMAFVDAL  360 (361)
Q Consensus       318 ------------------~~~~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~-~~~l~~~i~~~  360 (361)
                                        + ++|+|.++||+++| ++|+. ...+.| ..+ .++|.++|+++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~Pt~~lid~~G~~-~~~~~G-~~~~~~~l~~~l~~~  164 (172)
T 3f9u_A          105 NGTERTLRTVGDKWSYLQR-VKFGANAQPFYVLIDNEGNP-LNKSYA-YDEDISKYINFLQTG  164 (172)
T ss_dssp             TTEEEEEEEHHHHHHHHHH-HHHSCCCSSEEEEECTTSCB-SSCCBC-SCCCHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhhhHHHH-HHcCCCCcceEEEECCCCCE-EeeccC-CCCCHHHHHHHHHHH
Confidence                              6 78999999999999 56663 334445 666 99999999764

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.61  E-value=1.7e-15  Score=144.35  Aligned_cols=95  Identities=17%  Similarity=0.371  Sum_probs=80.7

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC-------CeEEEEEEcCCCchHHHHH
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-------GVKVGKFRADGDQKEYAKQ  320 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-------~v~~~~vd~~~~~~~l~~~  320 (361)
                      ...|.+|+.++|++++. .+.++++||+|||+||++|+.+.|.|+++++.+++.       .+.|++||++.+ ++++ +
T Consensus        22 ~~~V~~Lt~~~F~~~l~-~~~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~-~~la-~   98 (470)
T 3qcp_A           22 DSSVVDLSGDDFSRVHR-VAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE-VDLC-R   98 (470)
T ss_dssp             CTTEEECSCSCGGGTCT-TGGGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC-HHHH-H
T ss_pred             CCCcEECCHHHHHHHHH-hCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC-HHHH-H
Confidence            46799999999998775 234589999999999999999999999999999731       499999999999 9999 9


Q ss_pred             cCCCCCCCeEEEEeCCCC-CeeecCC
Q 018045          321 KLQLGSFPTILFFPKHSS-KPIKYPS  345 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~-~~~~~~~  345 (361)
                      +|+|.++||+++|++|+. ....|.|
T Consensus        99 ~y~V~~~PTlilf~~gg~~~~~~y~G  124 (470)
T 3qcp_A           99 KYDINFVPRLFFFYPRDSCRSNEECG  124 (470)
T ss_dssp             HTTCCSSCEEEEEEESSCCCTTSCCC
T ss_pred             HcCCCccCeEEEEECCCceEEEEeeC
Confidence            999999999999976543 3445555

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.61  E-value=8.6e-16  Score=112.49  Aligned_cols=81  Identities=17%  Similarity=0.256  Sum_probs=72.9

Q ss_pred             cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045          271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV  350 (361)
Q Consensus       271 ~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~  350 (361)
                      ..+|.||++||++|+.+.|.++++++.+++ ++.|+.||++.+ .+++ ++|+|.++||+++  +|+  . .+.| ..+.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~~-~~~~-~~~~v~~~Pt~~~--~G~--~-~~~G-~~~~   73 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVD-REKA-IEYGLMAVPAIAI--NGV--V-RFVG-APSR   73 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTC-GGGG-GGTCSSCSSEEEE--TTT--E-EEEC-SSCC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCCC-HHHH-HhCCceeeCEEEE--CCE--E-EEcc-CCCH
Confidence            468999999999999999999999999986 799999999999 9999 9999999999999  776  4 5566 5788


Q ss_pred             HHHHHHHHHh
Q 018045          351 DSLMAFVDAL  360 (361)
Q Consensus       351 ~~l~~~i~~~  360 (361)
                      ++|.++|+++
T Consensus        74 ~~l~~~l~~~   83 (85)
T 1nho_A           74 EELFEAINDE   83 (85)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.61  E-value=4.9e-15  Score=144.98  Aligned_cols=106  Identities=25%  Similarity=0.575  Sum_probs=91.4

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhc-C-CCeEEEEEEcCCCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-G-NGVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~-~-~~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      ...|..|+.++|++++.  +.++++||+|||+||++|+.+.|.|+++++.++ + .++.+++||++.+ . +. . |+|.
T Consensus       357 ~~~v~~l~~~~f~~~v~--~~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~-~-~~-~-~~v~  430 (504)
T 2b5e_A          357 DSSVFQLVGKNHDEIVN--DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN-D-VR-G-VVIE  430 (504)
T ss_dssp             SCSEEEECTTTHHHHHH--CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC-C-CS-S-CCCS
T ss_pred             cccceecccccHHHhhc--cCCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCcc-c-cc-c-CCce
Confidence            46799999999999874  468999999999999999999999999999987 2 3699999999987 3 44 4 9999


Q ss_pred             CCCeEEEEeCCCC-CeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSS-KPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~-~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++||+++|++|+. ....|.| .++.++|.+||++.
T Consensus       431 ~~Pt~~~~~~G~~~~~~~~~G-~~~~~~l~~~i~~~  465 (504)
T 2b5e_A          431 GYPTIVLYPGGKKSESVVYQG-SRSLDSLFDFIKEN  465 (504)
T ss_dssp             SSSEEEEECCTTSCCCCBCCS-CCCHHHHHHHHHHH
T ss_pred             ecCeEEEEeCCceecceEecC-CCCHHHHHHHHHhc
Confidence            9999999988864 2567777 68999999999864

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.57  E-value=8.4e-15  Score=128.21  Aligned_cols=98  Identities=14%  Similarity=0.258  Sum_probs=85.1

Q ss_pred             ceecCcccHHHHHhhcCCCCcE-EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      +..+++++|+.++.   .++++ +|.||++||++|+.+.|.++++++.+.  ++.|+.||++.+ ++++ ++|+|.++||
T Consensus       120 ~~~l~~~~~~~~~~---~~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~~-~~l~-~~~~v~~~Pt  192 (229)
T 2ywm_A          120 KPQLSEKTLELLQV---VDIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDASEN-QDLA-EQFQVVGVPK  192 (229)
T ss_dssp             CCSCCHHHHHHHTT---CCSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGGC-HHHH-HHTTCCSSSE
T ss_pred             ccCCCHHHHHHHHh---cCCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCCC-HHHH-HHcCCcccCE
Confidence            56688899998764   55666 889999999999999999999999983  699999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++  +|+  ...+.| ..+.++|.++|+++
T Consensus       193 ~~~--~G~--~~~~~G-~~~~~~l~~~l~~~  218 (229)
T 2ywm_A          193 IVI--NKG--VAEFVG-AQPENAFLGYIMAV  218 (229)
T ss_dssp             EEE--GGG--TEEEES-CCCHHHHHHHHHHH
T ss_pred             EEE--CCE--EEEeeC-CCCHHHHHHHHHHH
Confidence            998  676  455776 78999999999764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.56  E-value=2.9e-15  Score=115.66  Aligned_cols=90  Identities=12%  Similarity=0.191  Sum_probs=67.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEEeCCCCCeeecCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~  345 (361)
                      +.+.+||+|||+||++|+.|.+.+....+... ...+.+.+||++.+. .+++ .+|+|.++||+++|++|++ ..... 
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~~~la-~~~~V~g~PT~i~f~~G~e-v~Ri~-   93 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLPPGLE-LARPVTFTPTFVLMAGDVE-SGRLE-   93 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCCTTCB-CSSCCCSSSEEEEEETTEE-EEEEE-
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCchhHH-HHCCCCCCCEEEEEECCEE-Eeeec-
Confidence            56789999999999999999975543321110 012778899998862 4788 8999999999999999884 33444 


Q ss_pred             CCCCHHHHHHHHHHh
Q 018045          346 ERRDVDSLMAFVDAL  360 (361)
Q Consensus       346 ~~~~~~~l~~~i~~~  360 (361)
                      |....+.|.++|+++
T Consensus        94 G~~~~~~f~~~L~~~  108 (116)
T 3dml_A           94 GYPGEDFFWPMLARL  108 (116)
T ss_dssp             CCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHH
Confidence            489999999999865

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.55  E-value=1.9e-14  Score=118.09  Aligned_cols=99  Identities=11%  Similarity=0.259  Sum_probs=77.7

Q ss_pred             ccHHHHHhhc-CCCCcEEEEEE-CCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc----------hHHHHHc
Q 018045          257 TGMENLARLD-HRQEPWLVVLY-APWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ----------KEYAKQK  321 (361)
Q Consensus       257 ~~f~~~~~~~-~~~~~vlv~F~-a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~----------~~l~~~~  321 (361)
                      .++.+.+... ..+++++|+|| |+||++|+.+.|.+   .++.+.+.. ++.++.||++...          .+++ ++
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~-~~~~v~vd~~~~~~~~~~~~~~~~~l~-~~  111 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGV-HLHMVEVDFPQKNHQPEEQRQKNQELK-AQ  111 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEECCSSCCCCHHHHHHHHHHH-HH
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcC-cEEEEEecCccccCCChhhHhhHHHHH-HH
Confidence            3455444322 25899999999 99999999999999   788777654 6999999998751          3888 89


Q ss_pred             CCCCCCCeEEEE-eCCCCCeeecCCCCC--CHHHHHHHHHHh
Q 018045          322 LQLGSFPTILFF-PKHSSKPIKYPSERR--DVDSLMAFVDAL  360 (361)
Q Consensus       322 ~~v~~~Pt~~~~-~~g~~~~~~~~~~~~--~~~~l~~~i~~~  360 (361)
                      |+|.++||+++| ++|+. ...+ | ..  +.++|.++|+++
T Consensus       112 ~~v~~~Pt~~~~d~~G~~-~~~~-G-~~~~~~~~l~~~l~~~  150 (154)
T 2ju5_A          112 YKVTGFPELVFIDAEGKQ-LARM-G-FEPGGGAAYVSKVKSA  150 (154)
T ss_dssp             TTCCSSSEEEEECTTCCE-EEEE-C-CCTTCHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEEcCCCCE-EEEe-c-CCCCCHHHHHHHHHHH
Confidence            999999999999 56663 3344 4 56  899999999875

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.31  E-value=4.7e-16  Score=123.74  Aligned_cols=89  Identities=16%  Similarity=0.251  Sum_probs=74.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcC--CCchHHHHHcCCCCCCCeEEEE--eCCCCC-
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRAD--GDQKEYAKQKLQLGSFPTILFF--PKHSSK-  339 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~--~~~~~l~~~~~~v~~~Pt~~~~--~~g~~~-  339 (361)
                      .++++||+|||+||++|+.+.|.+   +++++.+++ ++.++.||++  .+ .+++ ++|+|.++||+++|  ++|+.. 
T Consensus        18 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~-~~~~-~~~~v~~~Pt~~~~d~~~G~~~~   94 (130)
T 2lst_A           18 HGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDTPEG-QELA-RRYRVPGTPTFVFLVPKAGAWEE   94 (130)
Confidence            688999999999999999999999   999998876 7999999995  45 7899 99999999999999  456521 


Q ss_pred             eeecCCCCCCHHHHHHHHHHh
Q 018045          340 PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       340 ~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ...+.| ..+.++|.++|+++
T Consensus        95 ~~~~~G-~~~~~~l~~~l~~~  114 (130)
T 2lst_A           95 VGRLFG-SRPRAEFLKELRQV  114 (130)
Confidence            233444 68889999998865

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*

Probab=99.54  E-value=3.8e-14  Score=130.14  Aligned_cols=154  Identities=16%  Similarity=0.146  Sum_probs=110.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc----CCC-ceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT----GRP-FRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~----~~~-i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      ++++|++|||+||++| +++.+.    +.+ +.++|+|+|..  .++..++++++++++|++++++..+...   +....
T Consensus        25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r~~s~~~~~~v~~~a~~lgi~~~v~~~~~~~---~~~~~  101 (317)
T 1wy5_A           25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRA---FAKEN  101 (317)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHH---HHHHT
T ss_pred             CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEEechh---hhccC
Confidence            6899999999999877 888774    567 88999999964  5788999999999999999988766432   22232


Q ss_pred             CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCC--CcCCcCCCCCeEEEeeCccC
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPV--FEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~--~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      +      .+...||...+...+.+..+  +.+.+++|++++|.. ....+........  ..+.. ...+ ..++||++|
T Consensus       102 ~------~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~dD~~-Et~l~~l~rg~g~~gl~~~~-~~~~-~iirPLl~~  172 (317)
T 1wy5_A          102 R------MSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLL-ETSLLFFTRGTGLDGLIGFL-PKEE-VIRRPLYYV  172 (317)
T ss_dssp             T------CCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHH-HHHHHHHHHCCCHHHHHCSC-SEET-TEECTTTTC
T ss_pred             C------CCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCchhHHH-HHHHHHHHhCCCcccccCCC-CCCC-eEECCCccC
Confidence            2      14567888888888888776  678999999999853 3111111110000  00000 0001 368999999


Q ss_pred             cHHHHHHHHHhCCCCCCc
Q 018045          158 KGNDIWNFLRTMDVPINS  175 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~  175 (361)
                      +.+||++|++.+|+|+..
T Consensus       173 ~k~eI~~~~~~~gl~~~~  190 (317)
T 1wy5_A          173 KRSEIEEYAKFKGLRWVE  190 (317)
T ss_dssp             CHHHHHHHHHHTTCCCCC
T ss_pred             CHHHHHHHHHHcCCCeeE
Confidence            999999999999999864

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.53  E-value=4.1e-15  Score=121.17  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=52.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe-CCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP-KHSS  338 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~-~g~~  338 (361)
                      ++++|||+|||+||++|+.|.|.+.+..+.....+..|+.||+|.+..+++ .+++|.++||++||+ +|+.
T Consensus        43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~~~-~~~~v~~~PT~~f~~~~G~~  113 (151)
T 3ph9_A           43 SKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTDKN-LSPDGQYVPRIMFVDPSLTV  113 (151)
T ss_dssp             HTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSCGG-GCTTCCCSSEEEEECTTSCB
T ss_pred             cCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchhhH-hhcCCCCCCEEEEECCCCCE
Confidence            699999999999999999999999864322110012455566653325667 899999999999998 7763

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.52  E-value=5.9e-15  Score=122.51  Aligned_cols=97  Identities=18%  Similarity=0.342  Sum_probs=75.2

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH-HHHHcCCC--CCCCeEEEE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE-YAKQKLQL--GSFPTILFF  333 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~-l~~~~~~v--~~~Pt~~~~  333 (361)
                      ++|+....   .++++||+|||+||++|+.+.|.|+++++.+.. ++.|+.||++.+ .+ ++ ..|++  .++||+++|
T Consensus        37 ~~~~~~~~---~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~~-~~~~~-~~~~~~~~~~Pt~~~~  110 (164)
T 1sen_A           37 DGKKEAAA---SGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNLEDE-EEPKD-EDFSPDGGYIPRILFL  110 (164)
T ss_dssp             HHHHHHHH---HTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEGG-GSCSC-GGGCTTCSCSSEEEEE
T ss_pred             HHHHHHHh---cCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecCC-chHHH-HHhcccCCcCCeEEEE
Confidence            44555444   789999999999999999999999998877654 577888888877 55 77 78888  669999999


Q ss_pred             -eCCCCCeeecCCC---------CCCHHHHHHHHHHh
Q 018045          334 -PKHSSKPIKYPSE---------RRDVDSLMAFVDAL  360 (361)
Q Consensus       334 -~~g~~~~~~~~~~---------~~~~~~l~~~i~~~  360 (361)
                       ++|+. ...+.|.         ..+.++|.++|+++
T Consensus       111 d~~G~~-~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~  146 (164)
T 1sen_A          111 DPSGKV-HPEIINENGNPSYKYFYVSAEQVVQGMKEA  146 (164)
T ss_dssp             CTTSCB-CTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred             CCCCCE-EEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence             67763 2233331         26889999998764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.52  E-value=1.2e-14  Score=120.72  Aligned_cols=81  Identities=15%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCC---CCCCC
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ---LGSFP  328 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~---v~~~P  328 (361)
                      ..++++.+..+..  -.+++++|+|||+||++|+.+.|.++++++.++  ++.|+.||.+.+ ++++ .+|.   +.++|
T Consensus        39 ~~~~~~~~~~l~~--~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d~~-~~~~-~~~~~~~v~~iP  112 (167)
T 1z6n_A           39 NGLPSALTERLQR--IERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKGRA-EDDL-RQRLALERIAIP  112 (167)
T ss_dssp             HCCCHHHHHHHHT--CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHHHH-HHHT-TTTTTCSSCCSS
T ss_pred             cCCCHHHHHHHHH--hCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECCCC-HHHH-HHHHHcCCCCcC
Confidence            3455555554432  246899999999999999999999999999875  599999999988 8888 8887   99999


Q ss_pred             eEEEEeCCCC
Q 018045          329 TILFFPKHSS  338 (361)
Q Consensus       329 t~~~~~~g~~  338 (361)
                      |+++|++|+.
T Consensus       113 t~i~~~~~G~  122 (167)
T 1z6n_A          113 LVLVLDEEFN  122 (167)
T ss_dssp             EEEEECTTCC
T ss_pred             eEEEECCCCC
Confidence            9999988644

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.52  E-value=8.5e-14  Score=143.21  Aligned_cols=109  Identities=24%  Similarity=0.480  Sum_probs=96.7

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|..|+.++|++++...+.++.++|.||+|||++|+.+.|.|+++++.+++ .+.|+.|||+.+ ..+| ++|+|.++|
T Consensus       543 ~~v~~l~~~~f~~~v~~~~~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~P  619 (780)
T 3apo_A          543 PSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTG-LINVGSVDCGQY-HSFC-TQENVQRYP  619 (780)
T ss_dssp             CSEEECCHHHHHHHTTTCCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEETTTT-HHHH-HHTTCCSSS
T ss_pred             cceeecCcccHHHHhhccCCCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhC-CeEEEEEECcch-HHHH-HHcCCCCCC
Confidence            6799999999999886333467899999999999999999999999999998 899999999999 9999 999999999


Q ss_pred             eEEEEeCCCC---CeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSS---KPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~---~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|+.|..   ....|.|..++.++|.+||++.
T Consensus       620 ti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~  654 (780)
T 3apo_A          620 EIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGF  654 (780)
T ss_dssp             EEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTT
T ss_pred             eEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhh
Confidence            9999988764   3577876468999999999864

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.51  E-value=9.8e-14  Score=113.14  Aligned_cols=91  Identities=14%  Similarity=0.229  Sum_probs=76.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-----------------------chHHHHHcCC-
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-----------------------QKEYAKQKLQ-  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-----------------------~~~l~~~~~~-  323 (361)
                      .++++||+||++||++|+.+.|.++++++.+++.++.|+.|+++..                       ...++ +.|+ 
T Consensus        23 ~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (151)
T 3raz_A           23 KAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFM-KTYGN  101 (151)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHHHHHSCCSSCEEEECCSCHHHHH-HTTTC
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHHHHHcCCCCceEecCccchHHHH-HHhCC
Confidence            5799999999999999999999999999999766899999999732                       14577 7899 


Q ss_pred             -CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 -LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 -v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                       +.++|++++++..+.....+.| ..+.++|.++|+++
T Consensus       102 ~v~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~l~~l  138 (151)
T 3raz_A          102 TVGVLPFTVVEAPKCGYRQTITG-EVNEKSLTDAVKLA  138 (151)
T ss_dssp             CSCCSSEEEEEETTTTEEEECCS-CCCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCcEEEEECC-CCCHHHHHHHHHHH
Confidence             9999999999544433555665 78999999999876

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.51  E-value=9.4e-14  Score=110.69  Aligned_cols=86  Identities=21%  Similarity=0.363  Sum_probs=75.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC----------------------CchHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG----------------------DQKEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~----------------------~~~~l~~~~~~v~  325 (361)
                      .+++++|.||++||++|+.+.|.++++++.++  ++.|+.|+++.                      + ..++ ++|+|.
T Consensus        23 ~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~i~   98 (136)
T 1lu4_A           23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDAD-GVIW-ARYNVP   98 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTT-SHHH-HHTTCC
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCc-hhHH-HhcCCC
Confidence            57899999999999999999999999999997  59999999987                      4 6888 899999


Q ss_pred             CCCeEEEEe-CCCCCeeecC---CCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFP-KHSSKPIKYP---SERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~-~g~~~~~~~~---~~~~~~~~l~~~i~~~  360 (361)
                      ++|++++++ +|+  ...+.   | ..+.++|.++|+++
T Consensus        99 ~~P~~~lid~~G~--i~~~~~~~g-~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           99 WQPAFVFYRADGT--STFVNNPTA-AMSQDELSGRVAAL  134 (136)
T ss_dssp             SSSEEEEECTTSC--EEEECCSSS-CCCHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCc--EEEEEcCCC-ccCHHHHHHHHHHH
Confidence            999999995 555  33555   5 68999999999876

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.51  E-value=8e-14  Score=123.17  Aligned_cols=97  Identities=15%  Similarity=0.182  Sum_probs=79.3

Q ss_pred             cCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhc--C-CCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          254 LNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLA--G-NGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       254 l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~--~-~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      ++.+.++.+..  -.++.+++.||||||++|+.+.|.|++++..++  + .++.+..||++.+ ++++ ++|+|.++||+
T Consensus       125 l~~~~~~~~~~--~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~-~~~~-~~~~V~~vPt~  200 (243)
T 2hls_A          125 LEDATKEALKS--LKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYEN-PDIA-DKYGVMSVPSI  200 (243)
T ss_dssp             CCHHHHHHHHH--CCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTC-HHHH-HHTTCCSSSEE
T ss_pred             CCHHHHHHHHH--cCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccC-HHHH-HHcCCeeeCeE
Confidence            44455555433  135677999999999999999999999999983  1 3699999999999 9999 89999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++  +|+  . .+.| .++.++|.++|++.
T Consensus       201 ~i--~G~--~-~~~G-~~~~~~l~~~l~~~  224 (243)
T 2hls_A          201 AI--NGY--L-VFVG-VPYEEDFLDYVKSA  224 (243)
T ss_dssp             EE--TTE--E-EEES-CCCHHHHHHHHHHH
T ss_pred             EE--CCE--E-EEeC-CCCHHHHHHHHHHH
Confidence            88  665  3 3666 68999999999864

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*

Probab=99.51  E-value=2e-14  Score=139.91  Aligned_cols=172  Identities=13%  Similarity=0.110  Sum_probs=113.4

Q ss_pred             hHhC-CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045            6 EKFG-NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus         6 ~~~~-~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      +..+ ++++|++|||+||+++ +|+.+.+.++.++|+|+|...++..+.++++++++|++++++..+......   ..+.
T Consensus       205 ~~~~~~kvvvalSGGvDSsvla~ll~~~g~~v~av~vd~g~~~~~e~~~v~~~~~~lgi~~~vv~~~~~f~~~---l~g~  281 (503)
T 2ywb_A          205 ERAGKDRVLLAVSGGVDSSTLALLLAKAGVDHLAVFVDHGLLRLGEREEVEGALRALGVNLLVVDAKERFLKA---LKGV  281 (503)
T ss_dssp             HHHTTSEEEEEECSSHHHHHHHHHHHHHTCEEEEEEEECSCSCTTHHHHHHHHHHHTTCCEEEEECHHHHHHH---HTTC
T ss_pred             hhccCccEEEEecCCcchHHHHHHHHHcCCeEEEEEEeCCCCChHHHHHHHHHHHHhCCCEEEEECcHHHHHh---hcCC
Confidence            3344 6899999999999877 888888888999999999888888999999999999999988665321111   1222


Q ss_pred             CCCCccchhchhhccccHHHHHHHc---cCCEEEEeeeccCCccCccC--CCceecCCCCcCCcCCCCCeEEEeeCccCc
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGTRSE--IPVVQVDPVFEGLEGGVGSLVKWNPVANVK  158 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~~R~~--~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~  158 (361)
                      . .+. ..+..|...+...+.+..+   +.+.+++|+..+|-...|..  ...+.......+.. ...+...++||.+|+
T Consensus       282 ~-~pe-~~r~~~~~~~~~~l~~~A~~~~g~~~la~G~~~~D~~Et~~~g~~~~iks~~~l~~l~-~~~~~~ii~PL~~l~  358 (503)
T 2ywb_A          282 E-DPE-EKRKIIGREFVAAFSQVARERGPFRFLAQGTLYPDVIESAGGHGAAKIKSHHNVGGLP-EDLEFELLEPFRLLF  358 (503)
T ss_dssp             C-CHH-HHHHHHHHHHHHHHHHHHHHHCCCSEEECCCCHHHHHC-----------------CCC-SSCCCEEECTTTTCC
T ss_pred             C-ChH-HHhhhhhHHHHHHHHHHHHhcCCCCEEEECCcCccchhhccCCccccccccccccccc-ccccCceEehhhcCC
Confidence            1 111 1222333445677777665   67899999965542112221  00000000000000 012356899999999


Q ss_pred             HHHHHHHHHhCCCCCCccccCCCCC
Q 018045          159 GNDIWNFLRTMDVPINSLHSQGYIS  183 (361)
Q Consensus       159 ~~dv~~yi~~~~lp~~~lY~~g~~~  183 (361)
                      ++||++|.+++|||++.++++.|..
T Consensus       359 K~EVr~~a~~~glp~~i~~~~P~~~  383 (503)
T 2ywb_A          359 KDEVRELALLLGLPDTLRLRHPFPG  383 (503)
T ss_dssp             HHHHHHHHHHTTCCHHHHSCCCCCT
T ss_pred             HHHHHHHHHHcCCChhheecCCCCC
Confidence            9999999999999999898887654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.51  E-value=2.1e-14  Score=119.48  Aligned_cols=79  Identities=13%  Similarity=0.281  Sum_probs=67.3

Q ss_pred             ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHH-H--HHHHHHhcCCCeEEEEEEcCCCchHHHHHcC-------
Q 018045          253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGS-Y--VELADKLAGNGVKVGKFRADGDQKEYAKQKL-------  322 (361)
Q Consensus       253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~-~--~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~-------  322 (361)
                      ...++.|+....   .+++|||+|||+||++|+.|.|. |  .++++.+++ ++.+++||.++. +++. +.|       
T Consensus        26 ~~~~ea~~~A~~---~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~-~~l~-~~y~~~~q~~   99 (173)
T 3ira_A           26 PWGEEAFEKARK---ENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREER-PDID-NIYMTVCQII   99 (173)
T ss_dssp             CSSHHHHHHHHH---HTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTC-HHHH-HHHHHHHHHH
T ss_pred             CcCHHHHHHHHH---hCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCccc-CcHH-HHHHHHHHHH
Confidence            345577777766   79999999999999999999994 3  678888876 799999999998 9998 788       


Q ss_pred             -CCCCCCeEEEEe-CCC
Q 018045          323 -QLGSFPTILFFP-KHS  337 (361)
Q Consensus       323 -~v~~~Pt~~~~~-~g~  337 (361)
                       +|.++||+++|+ +|+
T Consensus       100 ~gv~g~Pt~v~l~~dG~  116 (173)
T 3ira_A          100 LGRGGWPLNIIMTPGKK  116 (173)
T ss_dssp             HSCCCSSEEEEECTTSC
T ss_pred             cCCCCCcceeeECCCCC
Confidence             999999999996 565

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.51  E-value=6.6e-15  Score=112.86  Aligned_cols=74  Identities=16%  Similarity=0.302  Sum_probs=61.4

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC------CCchHHHHHcCCCCCCCeEEEEeCCCCCeee
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD------GDQKEYAKQKLQLGSFPTILFFPKHSSKPIK  342 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~------~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~  342 (361)
                      +++++|.|||+||++|+.+.|.|+++++.++       .||++      .+ .+++ ++|+|.++||+++  +|+  .  
T Consensus        12 ~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~-------~v~~~~~~~~~~~-~~l~-~~~~V~~~PT~~i--~G~--~--   76 (106)
T 3kp8_A           12 RQIGGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPGTPQ-AQEC-TEAGITSYPTWII--NGR--T--   76 (106)
T ss_dssp             HHHTCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCTTCTTSCC-CHHH-HHTTCCSSSEEEE--TTE--E--
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHhCC-------EEEEecccccchh-HHHH-HHcCCeEeCEEEE--CCE--E--
Confidence            5677999999999999999999999986553       45665      45 8899 9999999999877  665  2  


Q ss_pred             cCCCCCCHHHHHHHHH
Q 018045          343 YPSERRDVDSLMAFVD  358 (361)
Q Consensus       343 ~~~~~~~~~~l~~~i~  358 (361)
                      +.| .++.++|.+|+.
T Consensus        77 ~~G-~~~~~~l~~~~~   91 (106)
T 3kp8_A           77 YTG-VRSLEALAVASG   91 (106)
T ss_dssp             EES-CCCHHHHHHHHT
T ss_pred             ecC-CCCHHHHHHHhC
Confidence            566 799999999874

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.50  E-value=1.6e-13  Score=113.32  Aligned_cols=90  Identities=13%  Similarity=0.269  Sum_probs=75.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcC-------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL-------------------------  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~-------------------------  322 (361)
                      .++++||.||++||++|+.+.|.+.++++.+++.++.|+.|+++.. .+.. ++|                         
T Consensus        33 ~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (165)
T 3or5_A           33 KGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQ-LPNV-KNYMKTQGIIYPVMMATPELIRAFNGYI  110 (165)
T ss_dssp             TTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCC-HHHH-HHHHHHHTCCSCEEECCHHHHHHHHTTS
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCC-HHHH-HHHHHHcCCCCceEecCHHHHHHHhhhh
Confidence            5789999999999999999999999999999875699999999987 6555 555                         


Q ss_pred             --CCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 --QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 --~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                        ++.++|++++++..+.....+.| ..+.++|.++|+++
T Consensus       111 ~~~i~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~l~~~  149 (165)
T 3or5_A          111 DGGITGIPTSFVIDASGNVSGVIVG-PRSKADFDRIVKMA  149 (165)
T ss_dssp             TTCSCSSSEEEEECTTSBEEEEECS-CCCHHHHHHHHHHH
T ss_pred             ccCCCCCCeEEEECCCCcEEEEEcC-CCCHHHHHHHHHHH
Confidence              89999999999544433445555 68999999999875

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.50  E-value=2e-13  Score=110.30  Aligned_cols=101  Identities=15%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--------------------
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--------------------  311 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--------------------  311 (361)
                      ..++.+.+.....   .+++++|.||++||++|+.+.|.++++++.+++ .+.|+.|+++                    
T Consensus        15 ~~~~g~~~~~~~~---~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~   90 (148)
T 2b5x_A           15 AWLNGEVTREQLI---GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDI   90 (148)
T ss_dssp             EEESCCCCHHHHT---TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTC
T ss_pred             ccccCcccchhhc---CCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC-CcEEEEEEcCCCccccCHHHHHHHHHHcCC
Confidence            4566666655433   679999999999999999999999999999987 5999999964                    


Q ss_pred             -------CCchHHHHHcCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          312 -------GDQKEYAKQKLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       312 -------~~~~~l~~~~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                             .+ ..++ +.|+|.++|+++++ ++|+ ....+.| ..+.++|.++|+++
T Consensus        91 ~~~~~~d~~-~~~~-~~~~v~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~~  143 (148)
T 2b5x_A           91 TQPIFVDSD-HALT-DAFENEYVPAYYVFDKTGQ-LRHFQAG-GSGMKMLEKRVNRV  143 (148)
T ss_dssp             CSCEEECSS-CHHH-HHTCCCCSSEEEEECTTCB-EEEEEES-CSTTHHHHHHHHHH
T ss_pred             CcceEECCc-hhHH-HHhCCCCCCEEEEECCCCc-EEEEecC-CCCHHHHHHHHHHH
Confidence                   34 6788 89999999999999 4554 2444555 67889999999875

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.49  E-value=7e-14  Score=100.28  Aligned_cols=74  Identities=15%  Similarity=0.252  Sum_probs=64.3

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCC-CH
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR-DV  350 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~-~~  350 (361)
                      ..|.||++||++|+.+.|.++++++.+++ ++.++.||   + .+++ ++|+|.++||+++  +|+  .+.. | .. +.
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~---~-~~~~-~~~~v~~~Pt~~~--~G~--~~~~-G-~~~~~   69 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKIK---E-MDQI-LEAGLTALPGLAV--DGE--LKIM-G-RVASK   69 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC---S-HHHH-HHHTCSSSSCEEE--TTE--EEEC-S-SCCCH
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC-ceEEEEec---C-HHHH-HHCCCCcCCEEEE--CCE--EEEc-C-CCCCH
Confidence            46899999999999999999999999986 79999998   5 7899 8999999999999  676  4444 5 66 89


Q ss_pred             HHHHHHH
Q 018045          351 DSLMAFV  357 (361)
Q Consensus       351 ~~l~~~i  357 (361)
                      ++|.++|
T Consensus        70 ~~l~~~l   76 (77)
T 1ilo_A           70 EEIKKIL   76 (77)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998875

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A

Probab=99.49  E-value=4.3e-14  Score=128.90  Aligned_cols=167  Identities=19%  Similarity=0.264  Sum_probs=101.9

Q ss_pred             hHhC-CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHH-HHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045            6 EKFG-NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDE-VEKHFGIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus         6 ~~~~-~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~-~~~~~g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      +..+ ++++|++|||+||+++ +|+.+. +.++.++|+|+|...++..+.+.+ +++++|++++++..+.. +..  ...
T Consensus        16 ~~v~~~kvlvalSGGvDSsvla~ll~~~~g~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~-f~~--~l~   92 (308)
T 2dpl_A           16 ETVGDSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPEFVVKTFRDEFGMNLHYVDAQDR-FFS--ALK   92 (308)
T ss_dssp             HHHTTSCEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCCCTTHHHHHHHHHTTTTCCEEEEEECHHH-HHH--HTT
T ss_pred             HHhCCCCEEEEEeChHHHHHHHHHHHHhhCCCEEEEEEcCCCCChHHHHHHHHHHHHHcCCcEEEEECCHH-HHH--hhh
Confidence            3344 7899999999999877 888776 888999999999865444555665 66789999998866432 111  112


Q ss_pred             CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG  159 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~  159 (361)
                      +. ..+......||.. ....+.+..+  +.+.+++|+.++|....+..+....  +. .+ .....+...++||.+|++
T Consensus        93 ~~-~~pe~~~~~~~~~-~~~~l~~~A~~~g~~~la~Gh~~dD~~Et~~~iks~~--~~-~~-l~~~~~~~virPL~~l~K  166 (308)
T 2dpl_A           93 GV-TDPEEKRKIIGRV-FIEVFEEVAKKIGAEYLIQGTIAPDWIESQGKIKSHH--NV-GG-LPEKLNLKLIEPLRDLYK  166 (308)
T ss_dssp             TC-CCHHHHHHHHHHH-HHHHHHHHHHHHTCSEEECCCCCC-------------------------CCCEEECTTTTCCH
T ss_pred             CC-CCHHHHHHHHHHH-HHHHHHHHHHHcCcCEEEECCCCccchhhccchhhhh--cc-cc-CCccCCCeEEEEcccCCH
Confidence            22 1111112234443 3445555554  6789999999886532222121110  00 00 000123567999999999


Q ss_pred             HHHHHHHHhCCCCCCccccCCC
Q 018045          160 NDIWNFLRTMDVPINSLHSQGY  181 (361)
Q Consensus       160 ~dv~~yi~~~~lp~~~lY~~g~  181 (361)
                      +||++|.+.+|+|++..+.+.|
T Consensus       167 ~EI~~~a~~~glp~~i~~~~P~  188 (308)
T 2dpl_A          167 DEVRELAKFLGLPEKIYNRMPF  188 (308)
T ss_dssp             HHHHHHHHHTTCCHHHHTCCCC
T ss_pred             HHHHHHHHHhCCCceeeecCCC
Confidence            9999999999999876665443

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.48  E-value=8.2e-14  Score=121.50  Aligned_cols=99  Identities=15%  Similarity=0.228  Sum_probs=79.7

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC--CchHHHHHcCCCCCCCeEEEE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQKEYAKQKLQLGSFPTILFF  333 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--~~~~l~~~~~~v~~~Pt~~~~  333 (361)
                      +++++++.....+..+++.||++ ||++|+.+.|.++++++. .+ ++.|+.||++.  + ++++ ++|+|.++||+++|
T Consensus        10 ~~~~~~~~~~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~~-~v~~~~vd~~~~~~-~~~~-~~~~v~~~Pt~~~~   85 (226)
T 1a8l_A           10 KVIKEEFFSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-TD-KLSYEIVDFDTPEG-KELA-KRYRIDRAPATTIT   85 (226)
T ss_dssp             HHHHHHTGGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-CT-TEEEEEEETTSHHH-HHHH-HHTTCCSSSEEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-CC-ceEEEEEeCCCccc-HHHH-HHcCCCcCceEEEE
Confidence            45555551122456678999999 999999999999999865 34 69999999998  8 9999 99999999999999


Q ss_pred             eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          334 PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+.....|.| ..+.+++.+|+..+
T Consensus        86 ~~g~~~~~~~~G-~~~~~~l~~~l~~~  111 (226)
T 1a8l_A           86 QDGKDFGVRYFG-LPAGHEFAAFLEDI  111 (226)
T ss_dssp             ETTBCCSEEEES-CCCTTHHHHHHHHH
T ss_pred             cCCceeeEEEec-cCcHHHHHHHHHHH
Confidence            988754467766 56778888887653

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.48  E-value=2.2e-13  Score=108.40  Aligned_cols=86  Identities=21%  Similarity=0.257  Sum_probs=74.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----------------------CchHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----------------------DQKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----------------------~~~~l~~~~~~v  324 (361)
                      .+++++|.||++||++|+.+.|.++++++.++  ++.|+.|+++.                       + ..++ +.|+|
T Consensus        24 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~i   99 (136)
T 1zzo_A           24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTD-GSVW-ANFGV   99 (136)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTT-CHHH-HHTTC
T ss_pred             CCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCC-cHHH-HHcCC
Confidence            57899999999999999999999999999997  59999999854                       4 6788 89999


Q ss_pred             CCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++|++++++ +|+  ...+.| ..+.++|.++|+++
T Consensus       100 ~~~P~~~~id~~g~--i~~~~g-~~~~~~l~~~l~~~  133 (136)
T 1zzo_A          100 TQQPAYAFVDPHGN--VDVVRG-RMSQDELTRRVTAL  133 (136)
T ss_dssp             CSSSEEEEECTTCC--EEEEES-CCCHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCC--EEEEec-CCCHHHHHHHHHHH
Confidence            9999999995 555  335665 68899999999876

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.47  E-value=9.9e-14  Score=114.52  Aligned_cols=104  Identities=14%  Similarity=0.274  Sum_probs=81.1

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-------------------
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-------------------  310 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-------------------  310 (361)
                      .+..++.+.+.....   .++++||+||++||++|+.+.|.++++++.++..++.|+.|++                   
T Consensus        22 ~l~~~~g~~~~~~~~---~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~   98 (164)
T 2h30_A           22 TMKTADNRPASVYLK---KDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGL   98 (164)
T ss_dssp             TCEETTSSBGGGGCC---TTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTS
T ss_pred             ccCCCCCCEeeHHHh---CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhC
Confidence            456666666654332   6889999999999999999999999999998655677776664                   


Q ss_pred             ---------CCCchHHHHHcCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          311 ---------DGDQKEYAKQKLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       311 ---------~~~~~~l~~~~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                               +.+ ..++ ++|+|.++|+++++ ++|+ ....+.| ..+.++|.++|+++
T Consensus        99 ~~~~~~~~~d~~-~~~~-~~~~v~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~i~~~  154 (164)
T 2h30_A           99 NYPKLPVVTDNG-GTIA-QNLNISVYPSWALIGKDGD-VQRIVKG-SINEAQALALIRNP  154 (164)
T ss_dssp             CCTTSCEEECTT-CHHH-HHTTCCSSSEEEEECTTSC-EEEEEES-CCCHHHHHHHHHCT
T ss_pred             CCCcceEEEcCc-hHHH-HHcCCCccceEEEECCCCc-EEEEEcC-CCCHHHHHHHHHHH
Confidence                     333 6788 89999999999999 5565 2444555 68999999999875

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.46  E-value=1.9e-13  Score=119.46  Aligned_cols=88  Identities=18%  Similarity=0.269  Sum_probs=75.6

Q ss_pred             CCCcEEEEEE-----CCCChhHHhhHHHHHHHHHHh--cCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCe
Q 018045          268 RQEPWLVVLY-----APWCQFCQAMEGSYVELADKL--AGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKP  340 (361)
Q Consensus       268 ~~~~vlv~F~-----a~wC~~C~~~~p~~~~la~~~--~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~  340 (361)
                      ..++++|.||     +|||++|+.+.|.|+++++.+  .+ .+.|++|||+.+ +++| ++|+|+++||+++|++|+ ..
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~-~v~~~~vd~~~~-~~l~-~~~~v~~~Ptl~~~~~~~-~~   94 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQD-KIKLDIYSPFTH-KEET-EKYGVDRVPTIVIEGDKD-YG   94 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTT-TEEEEEECTTTC-HHHH-HHTTCCBSSEEEEESSSC-CC
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCC-ceEEEEecCccc-HHHH-HHcCCCcCcEEEEECCCc-cc
Confidence            5677777777     899999999999999999888  44 799999999999 9999 999999999999998654 36


Q ss_pred             eecCCCCCCHHHHHHHHHHh
Q 018045          341 IKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       341 ~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ..|.| ..+.++|.+|+.++
T Consensus        95 ~~~~G-~~~~~~l~~~~~~~  113 (229)
T 2ywm_A           95 IRYIG-LPAGLEFTTLINGI  113 (229)
T ss_dssp             EEEES-CCCTTHHHHHHHHH
T ss_pred             ceecC-CccHHHHHHHHHHH
Confidence            77877 67888899888753

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.46  E-value=2.2e-13  Score=109.73  Aligned_cols=87  Identities=13%  Similarity=0.276  Sum_probs=74.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------------------------CchHHHHHcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------------------------DQKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------------------------~~~~l~~~~~  322 (361)
                      .+++++|.||++||++|+.+.|.+.++++.++..++.|+.|+++.                         + ..++ +.|
T Consensus        33 ~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~  110 (145)
T 3erw_A           33 KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSK-GELM-KEY  110 (145)
T ss_dssp             TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSS-SHHH-HHT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCc-hhHH-Hhc
Confidence            678999999999999999999999999999984479999999964                         4 6888 899


Q ss_pred             CCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          323 QLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       323 ~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      +|.++|+++++ ++|+ ....+.| ..+.++|.++|+
T Consensus       111 ~v~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~  145 (145)
T 3erw_A          111 HIITIPTSFLLNEKGE-IEKTKIG-PMTAEQLKEWTE  145 (145)
T ss_dssp             TCCEESEEEEECTTCC-EEEEEES-CCCHHHHHHHHC
T ss_pred             CcCccCeEEEEcCCCc-EEEEEcC-CcCHHHHHHhhC
Confidence            99999999999 5555 3445555 789999998874

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.46  E-value=4.3e-13  Score=109.20  Aligned_cols=90  Identities=9%  Similarity=0.282  Sum_probs=75.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------chHHHHHcCCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~~~l~~~~~~v~~  326 (361)
                      .++++||.||++||++|+.+.|.+.++++.+++.++.|+.|+++..                     +..++ +.|+|.+
T Consensus        25 ~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~~  103 (151)
T 2f9s_A           25 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVL-DAYDVSP  103 (151)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHH-HHTTCCS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHH-HhcCCCC
Confidence            5789999999999999999999999999999765699999999763                     14788 8999999


Q ss_pred             CCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+++++ ++|+ ....+.| ..+.++|.++|+++
T Consensus       104 ~P~~~lid~~G~-i~~~~~G-~~~~~~l~~~l~~l  136 (151)
T 2f9s_A          104 LPTTFLINPEGK-VVKVVTG-TMTESMIHDYMNLI  136 (151)
T ss_dssp             SCEEEEECTTSE-EEEEEES-CCCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCc-EEEEEeC-CCCHHHHHHHHHHH
Confidence            9999999 4555 2444555 67999999999876

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.45  E-value=4.9e-13  Score=108.85  Aligned_cols=89  Identities=17%  Similarity=0.337  Sum_probs=76.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch-----------------------HHHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK-----------------------EYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~-----------------------~l~~~~~~v  324 (361)
                      .+++++|.||++||++|+.+.|.+.++.+.+++.++.|+.|+++.. .                       .++ +.|+|
T Consensus        29 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v  106 (152)
T 2lja_A           29 KGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKN-KKAWENMVTKDQLKGIQLHMGTDRTFM-DAYLI  106 (152)
T ss_dssp             TTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSC-HHHHHHHHHHHTCCSEEEECSSCTHHH-HHTTC
T ss_pred             CCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCc-HHHHHHHHHhcCCCCceeecCcchhHH-HHcCc
Confidence            5789999999999999999999999999999865699999999876 4                       688 89999


Q ss_pred             CCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++|++++++ +|+  .+....|..+.++|.++|+++
T Consensus       107 ~~~P~~~lid~~G~--i~~~~~g~~~~~~l~~~l~~~  141 (152)
T 2lja_A          107 NGIPRFILLDRDGK--IISANMTRPSDPKTAEKFNEL  141 (152)
T ss_dssp             CSSCCEEEECTTSC--EEESSCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCe--EEEccCCCCCHHHHHHHHHHH
Confidence            9999999997 565  444333468889999999875

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.42  E-value=5.3e-13  Score=107.88  Aligned_cols=89  Identities=12%  Similarity=0.206  Sum_probs=72.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH-------------------------HHHHcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE-------------------------YAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~-------------------------l~~~~~  322 (361)
                      .+++++|.||++||++|+.+.|.+.++.+.+++.++.|+.|+++.. .+                         ++ +.|
T Consensus        30 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~  107 (148)
T 3hcz_A           30 QAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERK-DEEWLKFIRSKKIGGWLNVRDSKNHTDFK-ITY  107 (148)
T ss_dssp             CCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSS-SHHHHHHHHHHTCTTSEEEECTTCCCCHH-HHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCC-HHHHHHHHHHcCCCCceEEeccccchhHH-Hhc
Confidence            5789999999999999999999999999999875699999999977 55                         88 899


Q ss_pred             CCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          323 QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       323 ~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +|.++|++++++..+.....+.| ..+.+++.+.+.+
T Consensus       108 ~i~~~P~~~lid~~G~i~~~~~g-~~~~~~~l~~l~~  143 (148)
T 3hcz_A          108 DIYATPVLYVLDKNKVIIAKRIG-YENLDDFLVQYEK  143 (148)
T ss_dssp             CCCSSCEEEEECTTCBEEEESCC-GGGHHHHHHHHHH
T ss_pred             CcCCCCEEEEECCCCcEEEecCC-HHHHHHHHHHHHH
Confidence            99999999999544333445554 5666666666654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.42  E-value=6.8e-13  Score=105.45  Aligned_cols=89  Identities=18%  Similarity=0.300  Sum_probs=74.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc----------------------------CCCchHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA----------------------------DGDQKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~----------------------------~~~~~~l~~  319 (361)
                      .+++++|.||++||++|+.+.|.++++++.+++ ++.++.|++                            +.+ ..++ 
T Consensus        21 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-   97 (138)
T 4evm_A           21 KGKKVYLKFWASWCSICLASLPDTDEIAKEAGD-DYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPS-GKLL-   97 (138)
T ss_dssp             TTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT-TEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTT-CHHH-
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC-CcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcc-hHHH-
Confidence            578999999999999999999999999999765 799999954                            223 5788 


Q ss_pred             HcCCCCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          320 QKLQLGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      +.|+|.++|+++++ ++|+ ....+.| ..+.++|.++|+++.
T Consensus        98 ~~~~v~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~l~  138 (138)
T 4evm_A           98 ETYGVRSYPTQAFIDKEGK-LVKTHPG-FMEKDAILQTLKELA  138 (138)
T ss_dssp             HHTTCCSSSEEEEECTTCC-EEEEEES-CCCHHHHHHHHHHCC
T ss_pred             HHcCcccCCeEEEECCCCc-EEEeecC-CCcHHHHHHHHHhhC
Confidence            89999999999999 4555 3445555 789999999999874

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}

Probab=99.42  E-value=7.2e-14  Score=119.91  Aligned_cols=144  Identities=15%  Similarity=0.199  Sum_probs=100.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH---HhcCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV---RSKGLFS   85 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~---~~~~~~~   85 (361)
                      ++++|++|||+||+++ +++.+.+.++.++++|+|...  ..++++++++.+|++++++..+........   ...+.  
T Consensus         7 ~kv~v~~SGG~DS~~ll~ll~~~g~~v~~~~v~~~~~~--~~~~~~~~a~~lgi~~~~~~~~~~~~~~~~~~~~~~~~--   82 (203)
T 3k32_A            7 MDVHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVIP--SYKLAEETAKILGFKHKVITLDRKIVEKAADMIIEHKY--   82 (203)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHTTEEEEEEEEECSSSC--TTHHHHHHHHHHTCEEEEEECCTHHHHHHHHHHHHHSS--
T ss_pred             CeEEEEEECcHHHHHHHHHHHHcCCCeEEEEEeCCCch--HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHhcCC--
Confidence            4799999999999877 888888888899999999754  568999999999999988876643222111   11221  


Q ss_pred             CCccchhchhhccccHHHHHHHccCCEEEEeeeccCCcc--CccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHH
Q 018045           86 FYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPG--TRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW  163 (361)
Q Consensus        86 ~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~--~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~  163 (361)
                          ....| ..++...+.+..++.+++++|+++||...  .|..+..+.  ..        .+...++||+.|+.+||+
T Consensus        83 ----~~~~c-~~~~~~~l~~~A~g~~~i~tGh~~dD~~et~~~~gl~~~~--~~--------~~~~iirPLl~~~k~eI~  147 (203)
T 3k32_A           83 ----PGPAI-QYVHKTVLEILADEYSILADGTRRDDRVPKLSYSEIQSLE--MR--------KNIQYITPLMGFGYKTLR  147 (203)
T ss_dssp             ----SHHHH-HHHHHHHHHHHTTTCSEEECCCCTTCCSSCCCHHHHHHHH--HH--------HTCEEECGGGGCCHHHHH
T ss_pred             ----CccHH-HHHHHHHHHHHhcCCCEEEECCCcccchhhcchhhccCcc--cc--------cCCeEEeccCCCCHHHHH
Confidence                12233 44566677766668899999999998631  111111111  00        134468899999999999


Q ss_pred             HHHHhCCCCC
Q 018045          164 NFLRTMDVPI  173 (361)
Q Consensus       164 ~yi~~~~lp~  173 (361)
                      +|.+++ +++
T Consensus       148 ~~a~~~-l~~  156 (203)
T 3k32_A          148 HLASEF-FIL  156 (203)
T ss_dssp             HHHHHH-EEE
T ss_pred             HHHHHh-CCc
Confidence            999987 544

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.42  E-value=9.1e-13  Score=108.17  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             CCCcEEEEEECCCChhHHh-hHHHHHHHHHHhcCCCeEEEEEEcC----------------------------CCchH--
Q 018045          268 RQEPWLVVLYAPWCQFCQA-MEGSYVELADKLAGNGVKVGKFRAD----------------------------GDQKE--  316 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~-~~p~~~~la~~~~~~~v~~~~vd~~----------------------------~~~~~--  316 (361)
                      .++++||+||++||++|+. +.|.++++++.+++.++.|+.|+++                            .. ..  
T Consensus        29 ~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  107 (160)
T 3lor_A           29 RGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVDMP-REGQ  107 (160)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECC-CTTC
T ss_pred             CCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEECCc-cccc
Confidence            5899999999999999999 6999999999998757999999863                            22 33  


Q ss_pred             ----HHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          317 ----YAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       317 ----l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                          ++ +.|+|.++|++++++..+.....+.| ..+.++|.+.|+++
T Consensus       108 ~~~~~~-~~~~v~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~i~~l  153 (160)
T 3lor_A          108 RIPSTM-KKYRLEGTPSIILADRKGRIRQVQFG-QVDDFVLGLLLGSL  153 (160)
T ss_dssp             SSCHHH-HHTTCCSSSEEEEECTTSBEEEEEES-CCCHHHHHHHHHHH
T ss_pred             hhhhHH-HhcccCccceEEEECCCCcEEEEecC-cCCHHHHHHHHHHH
Confidence                88 89999999999999644333445555 68899999999875

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}

Probab=99.42  E-value=3.1e-13  Score=117.44  Aligned_cols=176  Identities=13%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCCh-HHH------H-HHHHh
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDA-VEV------Q-ALVRS   80 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~-~~~------~-~~~~~   80 (361)
                      ++++|++|||+||+++ +++.+.+.++.++++|+|....+..++++++++++|++++++..+. ...      . .+...
T Consensus         4 ~~v~v~lSGG~DS~~ll~ll~~~~~~v~~~~~~~~~~~~~e~~~a~~~a~~lgi~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (219)
T 3bl5_A            4 EKAIVVFSGGQDSTTCLLWALKEFEEVETVTFHYNQRHSQEVEVAKSIAEKLGVKNHLLDMSLLNQLAPNALTRNDIEIE   83 (219)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSCTTCHHHHHHHHHHHTTCCCEEEEECGGGGGGSTGGGC-------
T ss_pred             CCEEEEccCcHHHHHHHHHHHHcCCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEeChHHhhhccccccccccccc
Confidence            5899999999999876 8888877788899999996555678999999999999998876543 100      0 01000


Q ss_pred             cCCCCCCccchhchhhcccc-HHHHHHHc--cCCEEEEeeeccCCccCccCCC----ceecCCCCcCCcCCCCCeEEEee
Q 018045           81 KGLFSFYEDGHQECCRVRKV-RPLRRALK--GLRAWITGQRKDQSPGTRSEIP----VVQVDPVFEGLEGGVGSLVKWNP  153 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~-~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~----~~~~~~~~~~~~~~~~~~~~~~P  153 (361)
                      ......  ..+...|...+. ..+.++.+  +.+++++|+.++|..+.|...+    .+.......    ...+...++|
T Consensus        84 ~~~~~~--~~~~~~~r~~~~~~~~~~~a~~~g~~~i~tG~~~dd~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ii~P  157 (219)
T 3bl5_A           84 VKDGEL--PSTFVPGRNLVFLSFASILAYQIGARHIITGVCETDFSGYPDCRDEFVKSCNVTVNLA----MEKPFVIHTP  157 (219)
T ss_dssp             ---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCC----CCGGGSHHHHHHHHHHHHHH----HTSCCEEECT
T ss_pred             ccccCC--CCceeechHHHHHHHHHHHHHHcCCCEEEEeccccccCCCCCCCHHHHHHHHHHHHhc----cCCCeEEEec
Confidence            000000  011123444444 33344443  6789999999999631111100    011000000    0023457899


Q ss_pred             CccCcHHHHHHHHHhCCCC---CCccccC--CCCCCCCCCCCC
Q 018045          154 VANVKGNDIWNFLRTMDVP---INSLHSQ--GYISIGCEPCTR  191 (361)
Q Consensus       154 i~~W~~~dv~~yi~~~~lp---~~~lY~~--g~~~~GC~~Ct~  191 (361)
                      |.+|+..||++|.+.+|||   +..-+.+  |..+.+|-.|+.
T Consensus       158 L~~~~K~ei~~~a~~~glp~~~~~~t~sc~~~~~~~~CG~C~~  200 (219)
T 3bl5_A          158 LMWLNKAETWKLADELGALDFVKNNTLTCYNGIIADGCGECPA  200 (219)
T ss_dssp             TTTCCHHHHHHHHHHTTCHHHHHHHCCCSTTSCCSSCCSCSHH
T ss_pred             cccCCHHHHHHHHHHcCCCccchhheeeccCCCCCCCCCCCHH
Confidence            9999999999999999993   2333322  333367877753

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.42  E-value=1.6e-12  Score=106.79  Aligned_cols=91  Identities=15%  Similarity=0.333  Sum_probs=74.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------------------CchHHHHHcCCCCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------------------DQKEYAKQKLQLGSFP  328 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------------------~~~~l~~~~~~v~~~P  328 (361)
                      .+++++|.||++||++|+.+.|.+.++++.+++.++.|+.|+++.                   + ..++ +.|+|.++|
T Consensus        40 ~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~v~~~P  117 (158)
T 3hdc_A           40 RGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDAT-GQVQ-QRYGANRLP  117 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTT-SHHH-HHTTCCSSS
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECch-HHHH-HHhCCCCcc
Confidence            578999999999999999999999999999985579999999987                   5 7899 999999999


Q ss_pred             eEEEEeCCCCCeeecCCC-CCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSE-RRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~-~~~~~~l~~~i~~~  360 (361)
                      +++++...+.....+.|. ..+.+++.+.+++.
T Consensus       118 ~~~lid~~G~i~~~~~G~~~~~~~~~~~~~~~~  150 (158)
T 3hdc_A          118 DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSL  150 (158)
T ss_dssp             EEEEECTTSBEEEEEESCCCTTSHHHHHHHHTT
T ss_pred             eEEEEcCCCCEEEEEeCCCccchHHHHHHHHhh
Confidence            988885444334444442 45677888877654

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.42  E-value=1e-12  Score=107.74  Aligned_cols=90  Identities=13%  Similarity=0.079  Sum_probs=73.9

Q ss_pred             CCCcEEEEEECCCChhHHhh-HHHHHHHHHHhcCCCeEEEEEEcC----------------------------CCch---
Q 018045          268 RQEPWLVVLYAPWCQFCQAM-EGSYVELADKLAGNGVKVGKFRAD----------------------------GDQK---  315 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~-~p~~~~la~~~~~~~v~~~~vd~~----------------------------~~~~---  315 (361)
                      .++++||+||++||++|+.+ .|.+.++++.+++.++.|+.|+++                            .. .   
T Consensus        27 ~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~  105 (158)
T 3eyt_A           27 RGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQP-GDGA  105 (158)
T ss_dssp             TTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEECC-CSSS
T ss_pred             CCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcCc-cchh
Confidence            57899999999999999996 999999999998657999999864                            11 2   


Q ss_pred             --HHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          316 --EYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       316 --~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                        .++ +.|+|.++|++++++..+.....+.| ..+.++|.+.|+++
T Consensus       106 ~~~~~-~~~~v~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~i~~l  150 (158)
T 3eyt_A          106 MPRTM-AAYQMRGTPSLLLIDKAGDLRAHHFG-DVSELLLGAEIATL  150 (158)
T ss_dssp             SCHHH-HHTTCCSSSEEEEECTTSEEEEEEES-CCCHHHHHHHHHHH
T ss_pred             hHHHH-HHcCCCCCCEEEEECCCCCEEEEEeC-CCCHHHHHHHHHHH
Confidence              578 89999999999999544433444555 68899999999875

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.41  E-value=4.8e-13  Score=101.81  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=68.5

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD  349 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~  349 (361)
                      ...++.|+++||++|+.++|.++++++.+   ++.|..||++.+ +++. .+|++. +|++++|.+|+  .+ ..| ..+
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId~d-~~l~-~~ygv~-VP~l~~~~dG~--~v-~~g-~~~   98 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKS---WFELEVINIDGN-EHLT-RLYNDR-VPVLFAVNEDK--EL-CHY-FLD   98 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHS---CCCCEEEETTTC-HHHH-HHSTTS-CSEEEETTTTE--EE-ECS-SCC
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhc---CCeEEEEECCCC-HHHH-HHhCCC-CceEEEEECCE--EE-Eec-CCC
Confidence            36799999999999999999999999886   389999999999 9999 899997 99999999887  44 334 588


Q ss_pred             HHHHHHHH
Q 018045          350 VDSLMAFV  357 (361)
Q Consensus       350 ~~~l~~~i  357 (361)
                      .++|.++|
T Consensus        99 ~~~L~~~L  106 (107)
T 2fgx_A           99 SDVIGAYL  106 (107)
T ss_dssp             CHHHHHHH
T ss_pred             HHHHHHHh
Confidence            89999887

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.40  E-value=2.2e-12  Score=104.97  Aligned_cols=92  Identities=14%  Similarity=0.212  Sum_probs=74.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch----------------------HHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK----------------------EYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~----------------------~l~~~~~~v~  325 (361)
                      .++++||.||++||++|+.+.|.+.++++.+++.++.|+.|+++.+ .                      .++ +.|+|.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~-~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~  104 (152)
T 3gl3_A           27 TGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAK-TGDAMKFLAQVPAEFTVAFDPKGQTP-RLYGVK  104 (152)
T ss_dssp             TTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSS-HHHHHHHHHHSCCCSEEEECTTCHHH-HHTTCC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCC-HHHHHHHHHHcCCCCceeECCcchhH-HHcCCC
Confidence            5789999999999999999999999999999875699999999876 4                      677 889999


Q ss_pred             CCCeEEEEeCCCCCeeecCCC-CCCHHHHHHHHHHhC
Q 018045          326 SFPTILFFPKHSSKPIKYPSE-RRDVDSLMAFVDALR  361 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~-~~~~~~l~~~i~~~~  361 (361)
                      ++|+++++...+.....+.|. ..+.++|.++|++++
T Consensus       105 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i~~~~  141 (152)
T 3gl3_A          105 GMPTSFLIDRNGKVLLQHVGFRPADKEALEQQILAAL  141 (152)
T ss_dssp             SSSEEEEECTTSBEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCEEEEEccCCCcCHHHHHHHHHHHH
Confidence            999999994433333444442 346789999998763

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.40  E-value=1e-12  Score=105.91  Aligned_cols=86  Identities=16%  Similarity=0.286  Sum_probs=70.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHH---HHHHhcCCCeEEEEEEcCCCchH------------------------HHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVE---LADKLAGNGVKVGKFRADGDQKE------------------------YAKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~---la~~~~~~~v~~~~vd~~~~~~~------------------------l~~~  320 (361)
                      .+++++|+|||+||++|+.+.|.+.+   +.+.+++.++.++.|+.+.. .+                        +. +
T Consensus        30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~  107 (142)
T 3eur_A           30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEE-LDEWKKHRNDFAKEWTNGYDKELVIKNK-N  107 (142)
T ss_dssp             CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSC-HHHHHHHGGGSCTTSEEEECTTCHHHHT-T
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCC-HHHHHHHHHhcccccccccCccchhhhh-h
Confidence            46999999999999999999999999   99999766899999999876 33                        36 7


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      .|+|.++|++++++..+. .+ +.+  .+.++|.++|++
T Consensus       108 ~~~v~~~P~~~lid~~G~-i~-~~~--~~~~~l~~~l~e  142 (142)
T 3eur_A          108 LYDLRAIPTLYLLDKNKT-VL-LKD--ATLQKVEQYLAE  142 (142)
T ss_dssp             CSCCTTCSEEEEECTTCB-EE-EEE--ECHHHHHHHHHC
T ss_pred             hcCCCcCCeEEEECCCCc-EE-ecC--CCHHHHHHHHhC
Confidence            899999999999965543 23 322  357999999874

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.40  E-value=1.2e-12  Score=105.75  Aligned_cols=87  Identities=16%  Similarity=0.262  Sum_probs=72.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHh-cCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL-AGNGVKVGKFRADGD------------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~-~~~~v~~~~vd~~~~------------------------~~~l~~~~~  322 (361)
                      .++++||.||++||++|+.+.|.+.++++.+ ++.++.|+.|+++..                        +..++ +.|
T Consensus        32 ~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~  110 (148)
T 3fkf_A           32 RNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETA-KQY  110 (148)
T ss_dssp             TTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHH-HHT
T ss_pred             CCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHH-Hhc
Confidence            5789999999999999999999999999999 665699999999874                        14788 899


Q ss_pred             CCCCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 QLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|.++|++++++ +|+  .+.. .  .+.++|.++|+++
T Consensus       111 ~v~~~P~~~lid~~G~--i~~~-~--~~~~~l~~~l~~l  144 (148)
T 3fkf_A          111 AILTLPTNILLSPTGK--ILAR-D--IQGEALTGKLKEL  144 (148)
T ss_dssp             TCCSSSEEEEECTTSB--EEEE-S--CCHHHHHHHHHHH
T ss_pred             CCCCcCEEEEECCCCe--EEEe-c--CCHHHHHHHHHHH
Confidence            999999999994 554  3332 2  2789999998875

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.40  E-value=1.4e-12  Score=106.28  Aligned_cols=89  Identities=19%  Similarity=0.274  Sum_probs=74.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-----------------------CCCchHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-----------------------DGDQKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-----------------------~~~~~~l~~~~~~v  324 (361)
                      .++++||.||++||++|+.+.|.+.++++.+++.++.|+.|+.                       +.+ ..++ +.|+|
T Consensus        27 ~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~i  104 (153)
T 2l5o_A           27 QGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDAD-KAVG-QAFGT  104 (153)
T ss_dssp             TTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSS-CHHH-HHHTC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCch-HHHH-HHcCC
Confidence            5789999999999999999999999999999875688887774                       344 6788 89999


Q ss_pred             CCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++|+++++ ++|+ ....+.| ..+.++|.++|+++
T Consensus       105 ~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~l  139 (153)
T 2l5o_A          105 QVYPTSVLIGKKGE-ILKTYVG-EPDFGKLYQEIDTA  139 (153)
T ss_dssp             CSSSEEEEECSSSC-CCEEEES-SCCHHHHHHHHHHH
T ss_pred             CccCeEEEECCCCc-EEEEEcC-CCCHHHHHHHHHHH
Confidence            999999999 4555 3445665 68999999999875

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.39  E-value=1.6e-12  Score=106.05  Aligned_cols=87  Identities=17%  Similarity=0.282  Sum_probs=70.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~~  323 (361)
                      .+++++|.||++||++|+.+.|.+.++++.+++.++.|+.|+++..                        +..++ +.|+
T Consensus        28 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~  106 (152)
T 2lrn_A           28 KGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVL-ESYC  106 (152)
T ss_dssp             TTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHH-HHTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHH-HHhC
Confidence            5789999999999999999999999999999875699999999872                        16788 8999


Q ss_pred             CCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 LGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |.++|+++++ ++|+. ...+.    +.++|.++|+++
T Consensus       107 v~~~P~~~lid~~G~i-~~~~~----~~~~l~~~l~~l  139 (152)
T 2lrn_A          107 IVGFPHIILVDPEGKI-VAKEL----RGDDLYNTVEKF  139 (152)
T ss_dssp             CCSSCEEEEECTTSEE-EEECC----CTTHHHHHHHHH
T ss_pred             CCcCCeEEEECCCCeE-EEeeC----CHHHHHHHHHHH
Confidence            9999999999 45552 22222    345777777654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.39  E-value=1.5e-12  Score=104.69  Aligned_cols=87  Identities=16%  Similarity=0.363  Sum_probs=70.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHH---HHHHhcCCCeEEEEEEcCCCchHH------------------------HHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVE---LADKLAGNGVKVGKFRADGDQKEY------------------------AKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~---la~~~~~~~v~~~~vd~~~~~~~l------------------------~~~  320 (361)
                      .+++++|+||++||++|+.+.|.+.+   +.+.+++.++.|+.|+++.. .+.                        + +
T Consensus        26 ~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~  103 (142)
T 3ewl_A           26 KAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDEN-REEWATKAVYMPQGWIVGWNKAGDIRTR-Q  103 (142)
T ss_dssp             CCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSC-HHHHHHHHTTSCTTCEEEECTTCHHHHT-T
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCC-HHHHHHHHHHcCCCcceeeCCccchhhH-H
Confidence            57899999999999999999999998   88888765799999999876 432                        2 3


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .|+|.++|++++++..+. . .+ + ..+.++|.++|+++
T Consensus       104 ~~~v~~~P~~~lid~~G~-i-~~-~-~~~~~~l~~~l~~~  139 (142)
T 3ewl_A          104 LYDIRATPTIYLLDGRKR-V-IL-K-DTSMEQLIDYLATQ  139 (142)
T ss_dssp             CSCCCSSSEEEEECTTCB-E-EE-C-SCCHHHHHHHHHC-
T ss_pred             HcCCCCCCeEEEECCCCC-E-Ee-c-CCCHHHHHHHHHHH
Confidence            899999999999954442 3 33 2 47899999999875

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.38  E-value=7.3e-13  Score=97.28  Aligned_cols=73  Identities=18%  Similarity=0.209  Sum_probs=62.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS  352 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~  352 (361)
                      ++.||++||++|+.++|.+++++..+      +.+||++++ ++++ .+|+++ +|++++ .+|+  .+.  | ..+.+.
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~------~~~vdid~~-~~l~-~~~g~~-vPtl~~-~~G~--~v~--g-~~~~~~   67 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA------FFSVFIDDD-AALE-SAYGLR-VPVLRD-PMGR--ELD--W-PFDAPR   67 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC------EEEEECTTC-HHHH-HHHTTT-CSEEEC-TTCC--EEE--S-CCCHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh------eEEEECCCC-HHHH-HHhCCC-cCeEEE-ECCE--EEe--C-CCCHHH
Confidence            78999999999999999998875322      688999999 9999 899998 999998 7777  443  4 689999


Q ss_pred             HHHHHHHh
Q 018045          353 LMAFVDAL  360 (361)
Q Consensus       353 l~~~i~~~  360 (361)
                      |.++|++.
T Consensus        68 L~~~l~~~   75 (87)
T 1ttz_A           68 LRAWLDAA   75 (87)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHH
Confidence            99999864

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.37  E-value=6e-12  Score=102.73  Aligned_cols=86  Identities=16%  Similarity=0.266  Sum_probs=69.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH-----------------------HHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE-----------------------YAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~-----------------------l~~~~~~v  324 (361)
                      .+++++|+||++||++|+.+.|.+.++++++++.++.|+.|+++.. .+                       +. +.|+|
T Consensus        34 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~v  111 (152)
T 2lrt_A           34 KGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDGD-EHFWKTSADNLPWVCVRDANGAYSSYI-SLYNV  111 (152)
T ss_dssp             GGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCC-HHHHHHHHTTCSSEEEECSSGGGCHHH-HHHTC
T ss_pred             CCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCC-HHHHHHHHhCCCceEEECCCCcchHHH-HHcCc
Confidence            4689999999999999999999999999999875699999999877 43                       77 89999


Q ss_pred             CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHH
Q 018045          325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAF  356 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~  356 (361)
                      .++|++++++..+.....+.| ..+.++...-
T Consensus       112 ~~~P~~~lid~~G~i~~~~~g-~~~~e~~~~~  142 (152)
T 2lrt_A          112 TNLPSVFLVNRNNELSARGEN-IKDLDEAIKK  142 (152)
T ss_dssp             CSCSEEEEEETTTEEEEETTT-CSCHHHHHHH
T ss_pred             ccCceEEEECCCCeEEEecCC-HHHHHHHHHH
Confidence            999999999644433444555 5666655443

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.36  E-value=4.1e-12  Score=106.91  Aligned_cols=89  Identities=13%  Similarity=0.315  Sum_probs=71.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCe------EEEEEEcCC-CchHHHHHcC------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGV------KVGKFRADG-DQKEYAKQKL------------------  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v------~~~~vd~~~-~~~~l~~~~~------------------  322 (361)
                      .++++||+||++||++|+.+.|.+.++++.+++.++      .|+.|+++. . .+.. ++|                  
T Consensus        58 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~-~~~~-~~~~~~~~~~~~~~~d~~~~~  135 (183)
T 3lwa_A           58 ENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYS-RDIA-QDFVTDNGLDYPSIYDPPFMT  135 (183)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCC-HHHH-HHHHHHTTCCSCEEECTTCGG
T ss_pred             CCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCC-HHHH-HHHHHHcCCCccEEECCcchH
Confidence            578999999999999999999999999999987457      999999998 5 5544 343                  


Q ss_pred             -------CCCCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 -------QLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 -------~v~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                             ++.++|+++++. +|+ ....+.| ..+.++|.++|+++
T Consensus       136 ~~~~~~~~v~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~l  179 (183)
T 3lwa_A          136 AASLGGVPASVIPTTIVLDKQHR-PAAVFLR-EVTSKDVLDVALPL  179 (183)
T ss_dssp             GGGTTTCCTTCCSEEEEECTTSC-EEEEECS-CCCHHHHHHHHHHH
T ss_pred             HHHhccCCCCCCCeEEEECCCCc-EEEEEcC-CCCHHHHHHHHHHH
Confidence                   689999887774 555 3445555 68999999999875

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1

Probab=99.36  E-value=1.6e-12  Score=124.19  Aligned_cols=153  Identities=14%  Similarity=0.167  Sum_probs=105.1

Q ss_pred             CCcEEEEecchHHHHHH-HHHHH-----cCCCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            9 GNDIAIAFSGAEDVALI-EYAHL-----TGRPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         9 ~~~i~vs~SGGKDS~~l-~l~~~-----~~~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      +++++|++|||+||++| |++.+     .+.++.++|+|+|..  .++..++++++++++|+++.++.-+..       .
T Consensus        13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~~s~~~~~~v~~~~~~lgi~~~v~~~~~~-------~   85 (433)
T 1ni5_A           13 SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLA-------Q   85 (433)
T ss_dssp             CSEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCC-------C
T ss_pred             CCEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCcccHHHHHHHHHHHHHcCCcEEEEEecCC-------C
Confidence            47899999999999877 87776     456788999999964  356788999999999999988754422       1


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCC-C-CcCC--cCCCCCeEEEeeCcc
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDP-V-FEGL--EGGVGSLVKWNPVAN  156 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~-~-~~~~--~~~~~~~~~~~Pi~~  156 (361)
                      .+      .+....|...+-..+.+.+++.+.+++|+.++|.. ....+....... . ..+.  ....++...++||++
T Consensus        86 ~~------~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~dD~a-Et~L~~l~RG~g~~gL~gm~~~~~~~~~~iiRPLl~  158 (433)
T 1ni5_A           86 EG------LGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQC-ETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLA  158 (433)
T ss_dssp             SS------STTTTHHHHHHHHHHHHTCCTTEEEECCCCHHHHH-HHHHHHHTTTCCTTGGGCCCSEEEETTEEEECGGGS
T ss_pred             CC------CCHHHHHHHHHHHHHHHHHhhCCeEEeeccchHHH-HHHHHHHHcCCCcccccCCCCccccCCceEEccCcc
Confidence            11      13344566666667777776778999999999853 211111100000 0 0000  000013557899999


Q ss_pred             CcHHHHHHHHHhCCCCCCc
Q 018045          157 VKGNDIWNFLRTMDVPINS  175 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp~~~  175 (361)
                      ++.+||.+|...++||+..
T Consensus       159 ~~k~eI~~y~~~~gl~~~~  177 (433)
T 1ni5_A          159 RTRGELVQWARQYDLRWIE  177 (433)
T ss_dssp             CCHHHHHHHHHHTTCCCBC
T ss_pred             CCHHHHHHHHHHcCCCeEE
Confidence            9999999999999999854

>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*

Probab=99.36  E-value=9.5e-13  Score=123.75  Aligned_cols=150  Identities=16%  Similarity=0.224  Sum_probs=97.6

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHH----HHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQ----ALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~----~~~~~~~   82 (361)
                      ++++|++|||+||+++ +++.+. +.++.++++|+|.  ++.+++++++++++|+ ++.++........    ..+....
T Consensus         1 ~kVvva~SGG~DSsvll~ll~~~~g~~V~av~vd~g~--~~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~~   78 (400)
T 1kor_A            1 MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQ--GEEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGA   78 (400)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSC--SSCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTC
T ss_pred             CcEEEEEeChHHHHHHHHHHHHhhCCcEEEEEEeCCC--HHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHhhHHHHHcCC
Confidence            4799999999999776 888776 8889999999997  6779999999999999 6877654422111    1122211


Q ss_pred             CCC--CC--ccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           83 LFS--FY--EDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        83 ~~~--~~--~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                      .+.  ..  ....+.|..    ..+.++++  +.+++++|.+++.....|.........          +..-.++||.+
T Consensus        79 ~~e~~y~~g~~~~R~~~~----~~L~~~A~~~G~~~IatG~~~d~nDq~~f~~g~~~l~----------p~l~ii~PL~~  144 (400)
T 1kor_A           79 VYEGYYLLGTSIARPLIA----KHLVRIAEEEGAEAIAHGATGKGNDQVRFELTAYALK----------PDIKVIAPWRE  144 (400)
T ss_dssp             CBTTTBCCTTTTHHHHHH----HHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHC----------TTCEEECGGGT
T ss_pred             ccccccccCCccchHHHH----HHHHHHHHHcCCCEEEECCCCCcccHHHHHHHHHhcC----------CCCEEEEeecc
Confidence            100  00  011222332    34455554  678999999996111123211111111          12345999999


Q ss_pred             C---cHHHHHHHHHhCCCCCCc
Q 018045          157 V---KGNDIWNFLRTMDVPINS  175 (361)
Q Consensus       157 W---~~~dv~~yi~~~~lp~~~  175 (361)
                      |   +.+||++|++.+|||+..
T Consensus       145 ~~~~tK~eI~~ya~~~gip~~~  166 (400)
T 1kor_A          145 WSFQGRKEMIAYAEAHGIPVPV  166 (400)
T ss_dssp             CCCCSHHHHHHHHHHTTCCCC-
T ss_pred             cccCCHHHHHHHHHHcCCCccc
Confidence            9   999999999999999864

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}

Probab=99.36  E-value=3.2e-12  Score=123.15  Aligned_cols=157  Identities=17%  Similarity=0.145  Sum_probs=107.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHH----cCCCceEEEccCCCC---cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL----TGRPFRVFSLDTGRL---NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~----~~~~i~v~~~dtg~~---~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      ++++|++|||+||++| +++.+    .+.++.++|+|.|..   .++..++++++++++|+++.++.-+...   +....
T Consensus        19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v~~~~~~~---~~~~~   95 (464)
T 3a2k_A           19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCETAQIDVPA---FQRSA   95 (464)
T ss_dssp             SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEEEECCCHH---HHTTT
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEEEEechhh---hhhcc
Confidence            6899999999999877 77776    567889999999975   2467889999999999999888665332   22222


Q ss_pred             CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCC-C-CcCC--cCCCCCeEEEeeCc
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDP-V-FEGL--EGGVGSLVKWNPVA  155 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~-~-~~~~--~~~~~~~~~~~Pi~  155 (361)
                      +.      +....|...+...+.++++  +.+.+++|+.++|.. ....+....... . ..+.  ....++...++||+
T Consensus        96 ~~------~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~dD~a-Et~L~~l~rG~g~~gL~gm~~~~~~~~~~iiRPLl  168 (464)
T 3a2k_A           96 GL------GAQEAARICRYRFFAELMEKHQAGYVAVGHHGDDQV-ETILMRLVRGSTSKGYAGIPVKRPFHGGYLIRPFL  168 (464)
T ss_dssp             TC------CSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHHHHH-HHHHHHHHHCCCSSSTTCSCSEEECSSSEEECGGG
T ss_pred             CC------CHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChHHHH-HHHHHHHHcCCCcccccCCCccccCCCCEEECCCc
Confidence            21      3345567777777777776  567999999999853 211111100000 0 0000  00001235689999


Q ss_pred             cCcHHHHHHHHHhCCCCCCcc
Q 018045          156 NVKGNDIWNFLRTMDVPINSL  176 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp~~~l  176 (361)
                      +++.+||.+|+..+|||+..-
T Consensus       169 ~~~k~eI~~ya~~~gl~~~~d  189 (464)
T 3a2k_A          169 AVSRAEIEAYCRQMGLSPRCD  189 (464)
T ss_dssp             GSCHHHHHHHHHHTCCSSCSC
T ss_pred             cCcHHHHHHHHHHcCCCeEEC
Confidence            999999999999999998653

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.35  E-value=3.8e-12  Score=103.77  Aligned_cols=84  Identities=19%  Similarity=0.340  Sum_probs=72.0

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc---------------------------CCCchHHHHHcC
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA---------------------------DGDQKEYAKQKL  322 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~---------------------------~~~~~~l~~~~~  322 (361)
                      ++++|.||++||++|+.+.|.+.++++.+ +  +.|+.|++                           +.. ..++ +.|
T Consensus        31 k~vll~f~~~~C~~C~~~~~~l~~l~~~~-~--v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~-~~~  105 (154)
T 3ia1_A           31 KPAVIVFWASWCTVCKAEFPGLHRVAEET-G--VPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRP-HEVA-ARF  105 (154)
T ss_dssp             SSEEEEEECTTCHHHHHHHHHHHHHHHHH-C--CCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCH-HHHH-TTS
T ss_pred             CeEEEEEEcccChhHHHHHHHHHHHHHHc-C--CeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccch-HHHH-HHh
Confidence            89999999999999999999999999999 4  88999998                           244 7888 899


Q ss_pred             CCCCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 QLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|.++|++++++ +|+ ....+.| ..+.++|.++|+++
T Consensus       106 ~v~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~~  142 (154)
T 3ia1_A          106 KVLGQPWTFVVDREGK-VVALFAG-RAGREALLDALLLA  142 (154)
T ss_dssp             SBCSSCEEEEECTTSE-EEEEEES-BCCHHHHHHHHHHT
T ss_pred             CCCcccEEEEECCCCC-EEEEEcC-CCCHHHHHHHHHhc
Confidence            999999999995 554 3445555 68999999999875

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.34  E-value=4e-12  Score=105.03  Aligned_cols=87  Identities=14%  Similarity=0.257  Sum_probs=73.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC------------------CCc---------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD------------------GDQ---------------  314 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~------------------~~~---------------  314 (361)
                      .++++||.||++||++|+.+.|.+.++.+.++  ++.|+.|+++                  ...               
T Consensus        36 ~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (165)
T 3ha9_A           36 GGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSW  113 (165)
T ss_dssp             CSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHSCTTS
T ss_pred             CCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcCCCCe
Confidence            57999999999999999999999999999998  5999999998                  330               


Q ss_pred             ------hHHHHHcCCCCCCCeEEEEe-CCCCCeeecCCCCC-CHHHHHHHHHHhC
Q 018045          315 ------KEYAKQKLQLGSFPTILFFP-KHSSKPIKYPSERR-DVDSLMAFVDALR  361 (361)
Q Consensus       315 ------~~l~~~~~~v~~~Pt~~~~~-~g~~~~~~~~~~~~-~~~~l~~~i~~~~  361 (361)
                            ..++ +.|+|.++|++++++ +|+  ... .| .. +.++|.++|+++.
T Consensus       114 ~~~~d~~~~~-~~~~v~~~P~~~lid~~G~--i~~-~g-~~~~~~~l~~~l~~l~  163 (165)
T 3ha9_A          114 IMVMDDGSLV-EKFNVRSIDYIVIMDKSSN--VLY-AG-TTPSLGELESVIKSVQ  163 (165)
T ss_dssp             EEEECCSHHH-HHTTCCSSSEEEEEETTCC--EEE-EE-ESCCHHHHHHHHHHC-
T ss_pred             eEEeChHHHH-HHhCCCCceEEEEEcCCCc--EEE-eC-CCCCHHHHHHHHHHHh
Confidence                  1678 899999999999995 455  344 44 67 8999999998863

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.34  E-value=5.2e-12  Score=101.85  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=63.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCC-----------------------chHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGD-----------------------QKEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~-----------------------~~~l~~~~~~  323 (361)
                      .++++||+||++||++|+.+.|.++++++.+++ .++.++.|+++..                       ...++ ++|+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~  105 (144)
T 1i5g_A           27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLT-TGFD  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH-HHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHH-HHcC
Confidence            578999999999999999999999999999984 4799999999863                       14688 8999


Q ss_pred             CCCCCeEEEEe--CCCCCeeecC
Q 018045          324 LGSFPTILFFP--KHSSKPIKYP  344 (361)
Q Consensus       324 v~~~Pt~~~~~--~g~~~~~~~~  344 (361)
                      |.++|++++++  +|+  .+...
T Consensus       106 v~~~P~~~lid~~~G~--i~~~~  126 (144)
T 1i5g_A          106 VKSIPTLVGVEADSGN--IITTQ  126 (144)
T ss_dssp             CCSSSEEEEEETTTCC--EEESC
T ss_pred             CCCCCEEEEEECCCCc--EEecc
Confidence            99999999997  565  44443

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.33  E-value=3.8e-12  Score=103.71  Aligned_cols=93  Identities=18%  Similarity=0.295  Sum_probs=73.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------hHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~~v~  325 (361)
                      .+++++|.||++||++|+.+.|.+.++.+.+++.++.|+.|+++.+.                      ..++ +.|+|.
T Consensus        27 ~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~  105 (154)
T 3kcm_A           27 KGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVG-KLYGTT  105 (154)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHH-HHHTCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHH-HHhCCC
Confidence            57899999999999999999999999999998767999999998741                      2377 889999


Q ss_pred             CCCeEEEEeCCCCCeeecCCC-CCCHHHHHHHHHHhC
Q 018045          326 SFPTILFFPKHSSKPIKYPSE-RRDVDSLMAFVDALR  361 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~-~~~~~~l~~~i~~~~  361 (361)
                      ++|+++++...+.....+.|. ..+.+++.++|+++.
T Consensus       106 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~  142 (154)
T 3kcm_A          106 GVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL  142 (154)
T ss_dssp             SBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC-
T ss_pred             CCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHH
Confidence            999888885444333444442 247789999998763

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.33  E-value=1.5e-11  Score=99.94  Aligned_cols=87  Identities=14%  Similarity=0.226  Sum_probs=71.7

Q ss_pred             CCCcEEEEEECCCChh--HHhhHHHHHHHHHHh-cCCCeEEEEEEcCCCc------------------------hHHHHH
Q 018045          268 RQEPWLVVLYAPWCQF--CQAMEGSYVELADKL-AGNGVKVGKFRADGDQ------------------------KEYAKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~--C~~~~p~~~~la~~~-~~~~v~~~~vd~~~~~------------------------~~l~~~  320 (361)
                      .+++++|+||++||++  |+.+.|.+.++.+.+ ++.++.|+.|+++...                        ..++ +
T Consensus        32 ~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~  110 (150)
T 3fw2_A           32 KQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVA-K  110 (150)
T ss_dssp             TTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHH-H
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHH-H
Confidence            5789999999999999  999999999999999 6656999999998761                        2788 8


Q ss_pred             cCCCCCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          321 KLQLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .|+|.++|++++++ +|+  .+...   .+.++|.+.|+++
T Consensus       111 ~~~v~~~P~~~lid~~G~--i~~~~---~~~~~l~~~l~~l  146 (150)
T 3fw2_A          111 QYSIYKIPANILLSSDGK--ILAKN---LRGEELKKKIENI  146 (150)
T ss_dssp             HTTCCSSSEEEEECTTSB--EEEES---CCHHHHHHHHHHH
T ss_pred             HcCCCccCeEEEECCCCE--EEEcc---CCHHHHHHHHHHH
Confidence            99999999999995 554  33322   2678888888765

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.32  E-value=8e-12  Score=116.77  Aligned_cols=106  Identities=9%  Similarity=0.167  Sum_probs=89.9

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--CCchHHHHHcCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--GDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--~~~~~l~~~~~~v~~  326 (361)
                      +.|.+++.+++..+..  ...++++|+||++||++|+.+.|.|+++++.+++ .+.|+.||++  .+ ..++ +.|+|.+
T Consensus       117 p~v~~~~~~~~~~~~~--~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~-~i~f~~vd~~~~~~-~~~~-~~fgi~~  191 (361)
T 3uem_A          117 PLVIEFTEQTAPKIFG--GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFIFIDSDHTDN-QRIL-EFFGLKK  191 (361)
T ss_dssp             CSEEECSTTTHHHHHS--CSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTT-TCEEEEECTTSGGG-HHHH-HHTTCCT
T ss_pred             CcceecCcccHHHHhc--CCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccC-ceEEEEecCChHHH-HHHH-HHcCCCc
Confidence            4688999999998875  2345789999999999999999999999999998 7999999999  56 8999 9999988


Q ss_pred             --CCeEEEEeCCCCCeeecC--CCCCCHHHHHHHHHHh
Q 018045          327 --FPTILFFPKHSSKPIKYP--SERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 --~Pt~~~~~~g~~~~~~~~--~~~~~~~~l~~~i~~~  360 (361)
                        +|++++|..|+. ...|.  ++..+.++|.+|++++
T Consensus       192 ~~~P~~~~~~~~~~-~~ky~~~~~~~~~~~l~~fi~~~  228 (361)
T 3uem_A          192 EECPAVRLITLEEE-MTKYKPESEELTAERITEFCHRF  228 (361)
T ss_dssp             TTCSEEEEEECC---CCEECCSSCCCCHHHHHHHHHHH
T ss_pred             cCCccEEEEEcCCc-ccccCCCccccCHHHHHHHHHHH
Confidence              999999988553 34443  4479999999999864

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.32  E-value=4.5e-12  Score=103.43  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=69.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v~  325 (361)
                      .+++++|.||++||++|+.+.|.++++++.  + ++.|+.|+++..                      +..++ +.|+|.
T Consensus        41 ~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~--~-~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~  116 (156)
T 1kng_A           41 KGKVSLVNVWASWCVPCHDEAPLLTELGKD--K-RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS-IEWGVY  116 (156)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTC--T-TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH-HHTTCC
T ss_pred             CCCEEEEEEEcccCHhHHHHHHHHHHHHhc--C-CeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHH-HhcCcC
Confidence            578999999999999999999999999876  3 689999886532                      15778 889999


Q ss_pred             CCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|+++++ ++|+ ....+.| ..+.++|.++|+++
T Consensus       117 ~~P~~~~id~~G~-i~~~~~g-~~~~~~l~~~l~~~  150 (156)
T 1kng_A          117 GVPETFVVGREGT-IVYKLVG-PITPDNLRSVLLPQ  150 (156)
T ss_dssp             SSCEEEEECTTSB-EEEEEES-CCCHHHHHHTHHHH
T ss_pred             ccCeEEEEcCCCC-EEEEEeC-CCCHHHHHHHHHHH
Confidence            99987777 5555 2344555 67888888888764

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}

Probab=99.32  E-value=1e-11  Score=116.10  Aligned_cols=161  Identities=11%  Similarity=0.063  Sum_probs=108.0

Q ss_pred             CCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--------cHHHHHHHHHHHHHhCCcEEEEcCChHHHH----
Q 018045            9 GNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEYMFPDAVEVQ----   75 (361)
Q Consensus         9 ~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--------~pet~~~v~~~~~~~g~~i~~~~p~~~~~~----   75 (361)
                      +++++|++|||+||+++ +|+.+.+.++..+|++++.+        .++..+.++++++++|++++++........    
T Consensus         9 ~~kVlVa~SGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~c~~~~d~~~a~~va~~lGIp~~vv~~~~~~~~~v~~   88 (376)
T 2hma_A            9 KTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKEYWDRVFE   88 (376)
T ss_dssp             GSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCCCC----CHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHH
T ss_pred             CCeEEEEEeCHHHHHHHHHHHHHcCCcEEEEEEECCCcccccccCCCHHHHHHHHHHHHHhCCcEEEEeChHHHHHHHHH
Confidence            36899999999999877 88888888999999999853        357789999999999999998865432211    


Q ss_pred             HHHHh--cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCC-Cceec-CC----CCcCCcCCC
Q 018045           76 ALVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEI-PVVQV-DP----VFEGLEGGV  145 (361)
Q Consensus        76 ~~~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~-~~~~~-~~----~~~~~~~~~  145 (361)
                      .++..  .|..  + .....|...+|...+.++++  +.+.++||+.+++.. .+... ..... +.    .|.-.....
T Consensus        89 ~~l~~y~~G~t--p-npc~~C~r~ik~~~l~~~A~~~G~d~IatGH~a~d~~-~~~~~~~l~rg~d~~kdqsyfL~~l~~  164 (376)
T 2hma_A           89 YFLAEYRAGRT--P-NPDVMCNKEIKFKAFLDYAITLGADYVATGHYARVAR-DEDGTVHMLRGVDNGKDQTYFLSQLSQ  164 (376)
T ss_dssp             HHHHHHHTTCC--C-CHHHHHHHHTTTTHHHHHHHTTTCSEEECCCSEEEEE-CSSSCEEEEECSSTTTCCGGGGTTCCH
T ss_pred             HHHHHHhcCCC--C-ChHHHHHHHHHHHHHHHHHHhCCCCEEEECcchhhhh-CCCchhhhhhccccccccchhccCCCh
Confidence            11222  2221  1 12335667788888887776  667999999888741 11111 11111 10    000000000


Q ss_pred             -CCeEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045          146 -GSLVKWNPVANVKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       146 -~~~~~~~Pi~~W~~~dv~~yi~~~~lp~  173 (361)
                       .....++||.+++..||.+|++++|||+
T Consensus       165 ~~l~~~i~PL~~~~K~eVr~~A~~~gl~~  193 (376)
T 2hma_A          165 EQLQKTMFPLGHLEKPEVRRLAEEAGLST  193 (376)
T ss_dssp             HHHTTEECTTTTCCHHHHHHHHHHTTCTT
T ss_pred             hhcCcEEecCcCCCHHHHHHHHHHcCCCc
Confidence             0123689999999999999999999985

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.32  E-value=4e-12  Score=105.35  Aligned_cols=85  Identities=19%  Similarity=0.336  Sum_probs=67.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-----------------------CCCchHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-----------------------DGDQKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-----------------------~~~~~~l~~~~~~v  324 (361)
                      .+++++|+||++||++|+.+.|.++++++.    ++.|+.|++                       +.+ ..++ +.|+|
T Consensus        50 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~v  123 (168)
T 2b1k_A           50 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGD-GMLG-LDLGV  123 (168)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETT-CHHH-HHHTC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEECCCChHHHHHHHHHcCCCCceeeECcc-hHHH-HHcCc
Confidence            689999999999999999999999999876    477888874                       444 6788 89999


Q ss_pred             CCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++|+++++. +|+ ....+.| ..+.++|.++|+++
T Consensus       124 ~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~~  158 (168)
T 2b1k_A          124 YGAPETFLIDGNGI-IRYRHAG-DLNPRVWEEEIKPL  158 (168)
T ss_dssp             CSSSEEEEECTTSB-EEEEEES-CCCHHHHHHTTHHH
T ss_pred             cccCEEEEECCCCe-EEEEEeC-CCCHHHHHHHHHHH
Confidence            9999776664 555 2344555 68889988888764

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.31  E-value=5.1e-12  Score=101.84  Aligned_cols=87  Identities=13%  Similarity=0.096  Sum_probs=70.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-------------------------hHHHHHcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-------------------------KEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-------------------------~~l~~~~~  322 (361)
                      .+++++|+||++||++|+.+.|.+.++.+.+++.++.|+.|+++.+.                         ..++ +.|
T Consensus        31 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~  109 (143)
T 4fo5_A           31 LGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELY-KKY  109 (143)
T ss_dssp             SCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSHHH-HHT
T ss_pred             CCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchHHH-HHc
Confidence            57899999999999999999999999999998657999999988541                         2467 789


Q ss_pred             CCCCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 QLGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|.++|++++++ +|+  .+...   .+.++|.++|+++
T Consensus       110 ~v~~~P~~~lid~~G~--i~~~~---~~~~~l~~~l~~i  143 (143)
T 4fo5_A          110 DLRKGFKNFLINDEGV--IIAAN---VTPEKLTEILKAI  143 (143)
T ss_dssp             TGGGCCCEEEECTTSB--EEEES---CCHHHHHHHHTC-
T ss_pred             CCCCCCcEEEECCCCE--EEEcc---CCHHHHHHHHHhC
Confidence            999999999997 454  33332   4578888888754

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.30  E-value=1.8e-11  Score=99.68  Aligned_cols=99  Identities=14%  Similarity=0.234  Sum_probs=76.9

Q ss_pred             ccHHHHHhhc-CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEE
Q 018045          257 TGMENLARLD-HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTIL  331 (361)
Q Consensus       257 ~~f~~~~~~~-~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~  331 (361)
                      .+|++.+... ..+|++||+||++||..|+.|....   .++++.++. ++.++++|.+..+ ..+. ++|++.++|+++
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~~~~~~~l~-~~y~v~~~P~~~  106 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYI-QFYKLGDFPYVS  106 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHH-HHHTCCSSSEEE
T ss_pred             cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecCCHhHHHHH-HHcCCCCCCEEE
Confidence            5677766433 3589999999999999999998765   667777755 6999999997642 4678 899999999999


Q ss_pred             EEeC--CCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          332 FFPK--HSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       332 ~~~~--g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+..  |+. .... ++ .++++|.++|+++
T Consensus       107 fld~~~G~~-l~~~-~g-~~~~~fl~~L~~~  134 (153)
T 2dlx_A          107 ILDPRTGQK-LVEW-HQ-LDVSSFLDQVTGF  134 (153)
T ss_dssp             EECTTTCCC-CEEE-SS-CCHHHHHHHHHHH
T ss_pred             EEeCCCCcE-eeec-CC-CCHHHHHHHHHHH
Confidence            9965  433 3333 44 8999999988764

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.29  E-value=1.2e-11  Score=99.99  Aligned_cols=69  Identities=16%  Similarity=0.288  Sum_probs=60.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCC-----------------------chHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGD-----------------------QKEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~-----------------------~~~l~~~~~~  323 (361)
                      .+++++|+||++||++|+.+.|.++++++.+++ .++.++.|+++..                       +..++ ++|+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~  105 (146)
T 1o8x_A           27 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLS-KHFN  105 (146)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHH-HHTT
T ss_pred             CCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHH-HHhC
Confidence            578999999999999999999999999999983 4799999999864                       14688 8999


Q ss_pred             CCCCCeEEEEe--CCC
Q 018045          324 LGSFPTILFFP--KHS  337 (361)
Q Consensus       324 v~~~Pt~~~~~--~g~  337 (361)
                      |.++|++++++  +|+
T Consensus       106 v~~~Pt~~lid~~~G~  121 (146)
T 1o8x_A          106 VESIPTLIGVDADSGD  121 (146)
T ss_dssp             CCSSSEEEEEETTTCC
T ss_pred             CCCCCEEEEEECCCCe
Confidence            99999999998  665

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.29  E-value=1.2e-11  Score=99.54  Aligned_cols=75  Identities=17%  Similarity=0.290  Sum_probs=63.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCC-----------------------chHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGD-----------------------QKEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~-----------------------~~~l~~~~~~  323 (361)
                      .+++++|+||++||++|+.+.|.+.++++.+++ .++.++.|+++..                       ...++ +.|+
T Consensus        27 ~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  105 (144)
T 1o73_A           27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELG-KTFG  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH-HHHT
T ss_pred             CCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHH-HHcC
Confidence            578999999999999999999999999999983 3799999999874                       14678 8999


Q ss_pred             CCCCCeEEEEe--CCCCCeeecCC
Q 018045          324 LGSFPTILFFP--KHSSKPIKYPS  345 (361)
Q Consensus       324 v~~~Pt~~~~~--~g~~~~~~~~~  345 (361)
                      |.++|++++++  +|+  .+...+
T Consensus       106 v~~~Pt~~lid~~~G~--i~~~~~  127 (144)
T 1o73_A          106 VESIPTLITINADTGA--IIGTQA  127 (144)
T ss_dssp             CCSSSEEEEEETTTCC--EEESCH
T ss_pred             CCCCCEEEEEECCCCe--EEecch
Confidence            99999999998  565  454443

>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1

Probab=99.28  E-value=2.8e-11  Score=106.01  Aligned_cols=178  Identities=14%  Similarity=0.137  Sum_probs=103.6

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCCh-HHHH-HHHHhcC--C
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDA-VEVQ-ALVRSKG--L   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~-~~~~-~~~~~~~--~   83 (361)
                      ++++|++|||+||+++ +++.+.+.++.++++|.|....+-.++++++++++|++ ++++.-+. ..+. ..+....  .
T Consensus         3 ~kvvv~lSGG~DS~~~l~ll~~~~~~v~av~~~~g~~~~~e~~~a~~~a~~lgi~~~~vi~~~~l~~~~~~~l~~~~~~v   82 (232)
T 2pg3_A            3 KRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSIPV   82 (232)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHHHHHHTTCCC
T ss_pred             CCEEEEecCcHHHHHHHHHHHHcCCCEEEEEEECCCCCHHHHHHHHHHHHHhCCCceEEEeChhHHHHhhhhcccccccc
Confidence            5799999999999876 88888777788899999976667789999999999999 88876541 1111 1111111  1


Q ss_pred             CC--CCcc-chhchhhcccc--HHH-HHHHc--cCCEEEEeeeccCCccCccCCC----ceecCCCCcCCcCCCCCeEEE
Q 018045           84 FS--FYED-GHQECCRVRKV--RPL-RRALK--GLRAWITGQRKDQSPGTRSEIP----VVQVDPVFEGLEGGVGSLVKW  151 (361)
Q Consensus        84 ~~--~~~~-~~~~cc~~~K~--~pl-~~~~~--~~~~~i~G~R~~Es~~~R~~~~----~~~~~~~~~~~~~~~~~~~~~  151 (361)
                      +.  .... .+..|...++.  ..+ ..+.+  +.+.+++|+.++|....+...+    .+.....+.    ...+...+
T Consensus        83 ~~~~~~~~~~~~~~~~~R~~~~~~la~~~A~~~g~~~I~~G~~~~D~~~~~~~r~~~~~~~~~~~~~~----~~~~~~i~  158 (232)
T 2pg3_A           83 PDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIVLG----IARDIRFE  158 (232)
T ss_dssp             CC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHHHHHH----HTSCCEEE
T ss_pred             cccccccCCCCCCeEechHHHHHHHHHHHHHHcCcCEEEEccCccccCCCCCCCHHHHHHHHHHHHHh----CCCCeEEE
Confidence            00  0001 11122111111  111 22222  6789999999998631121100    000000000    00134568


Q ss_pred             eeCccCcHHHHHHHHHhCCC-CC--CccccC--CCCCCCCCCCCC
Q 018045          152 NPVANVKGNDIWNFLRTMDV-PI--NSLHSQ--GYISIGCEPCTR  191 (361)
Q Consensus       152 ~Pi~~W~~~dv~~yi~~~~l-p~--~~lY~~--g~~~~GC~~Ct~  191 (361)
                      +||.+|++.||++|.+++|+ |+  ..-+.+  |-...+|-.|+.
T Consensus       159 ~PL~~~~K~ei~~~a~~~gl~~~~~~~t~sC~~~~~~~~CG~C~~  203 (232)
T 2pg3_A          159 TPLMWLNKAETWALADYYQQLDTVRYHTLTCYNGIKGDGCGQCAA  203 (232)
T ss_dssp             CTTTTCCHHHHHHHHHHTTCHHHHHHHCCCCTTSCCTTTTSCSHH
T ss_pred             EecCCCCHHHHHHHHHHcCCCcccccccCCCcCCCCCCcCCcCHh
Confidence            99999999999999999999 64  222222  111256766653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.26  E-value=2.2e-11  Score=103.50  Aligned_cols=90  Identities=18%  Similarity=0.290  Sum_probs=72.2

Q ss_pred             CCC-cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-----------------------------CCchHH
Q 018045          268 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-----------------------------GDQKEY  317 (361)
Q Consensus       268 ~~~-~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-----------------------------~~~~~l  317 (361)
                      .++ ++||+||++||++|+.+.|.++++.+++++.++.|+.|+++                             .+ ..+
T Consensus        44 ~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~-~~~  122 (196)
T 2ywi_A           44 KSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDET-QEV  122 (196)
T ss_dssp             CCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS-CHH
T ss_pred             CCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCc-hHH
Confidence            455 59999999999999999999999999998656999999984                             33 578


Q ss_pred             HHHcCCCCCCCeEEEEe-CCCCCeeec--------CCCCCCHHHHHHHHHHh
Q 018045          318 AKQKLQLGSFPTILFFP-KHSSKPIKY--------PSERRDVDSLMAFVDAL  360 (361)
Q Consensus       318 ~~~~~~v~~~Pt~~~~~-~g~~~~~~~--------~~~~~~~~~l~~~i~~~  360 (361)
                      + +.|+|.++|++++++ +|+. ....        ..+..+.++|.+.|+++
T Consensus       123 ~-~~~~v~~~P~~~lid~~G~i-~~~~~~~~~~~~~~g~~~~~~l~~~i~~l  172 (196)
T 2ywi_A          123 A-KAYDAACTPDFYIFDRDLKC-VYRGQLDDSRPNNGIPVTGESIRAALDAL  172 (196)
T ss_dssp             H-HHHTCCEESEEEEEETTCBE-EEEECSSSCCTTTCCCCCCHHHHHHHHHH
T ss_pred             H-HHhCCCCCCeEEEEcCCCeE-EEccccCcccccccCccCHHHHHHHHHHH
Confidence            8 899999999999995 5542 2221        12356889999998875

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.26  E-value=3e-11  Score=111.97  Aligned_cols=90  Identities=14%  Similarity=0.108  Sum_probs=74.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC---------------------------CchHHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG---------------------------DQKEYAKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~---------------------------~~~~l~~~  320 (361)
                      .++++||+||++||++|+.+.|.++++++++++.++.|+.|+++.                           + ..++ +
T Consensus        81 ~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~-~~l~-~  158 (352)
T 2hyx_A           81 RGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNN-YATW-T  158 (352)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTT-SHHH-H
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCc-HHHH-H
Confidence            478999999999999999999999999999986569999998753                           2 4688 8


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .|+|.++|++++++..+.....+.| ..+.++|.++|+++
T Consensus       159 ~ygV~~~Pt~~lID~~G~Iv~~~~G-~~~~~~l~~~I~~l  197 (352)
T 2hyx_A          159 NYRNRYWPAEYLIDATGTVRHIKFG-EGDYNVTETLVRQL  197 (352)
T ss_dssp             HTTCCEESEEEEECTTSBEEEEEES-BCCHHHHHHHHHHH
T ss_pred             HcCCCccCEEEEEeCCCeEEEEEcC-CCCHHHHHHHHHHH
Confidence            9999999999999444333444555 67899999999875

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.26  E-value=2.9e-11  Score=100.10  Aligned_cols=74  Identities=16%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCc-----------------------hHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQ-----------------------KEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~-----------------------~~l~~~~~~  323 (361)
                      .++++||+||++||++|+.+.|.++++++.+++ .++.|+.|+++...                       ..++ +.|+
T Consensus        47 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~  125 (165)
T 3s9f_A           47 SGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALT-KKYS  125 (165)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHH-HHTT
T ss_pred             CCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHH-HHcC
Confidence            578999999999999999999999999999985 47999999988761                       4678 8999


Q ss_pred             CCCCCeEEEEeC--CCCCeeecC
Q 018045          324 LGSFPTILFFPK--HSSKPIKYP  344 (361)
Q Consensus       324 v~~~Pt~~~~~~--g~~~~~~~~  344 (361)
                      |.++|++++++.  |+  .+...
T Consensus       126 v~~~Pt~~lid~~~G~--iv~~~  146 (165)
T 3s9f_A          126 VESIPTLIGLNADTGD--TVTTR  146 (165)
T ss_dssp             CCSSSEEEEEETTTCC--EEESC
T ss_pred             CCCCCEEEEEeCCCCE--EEecc
Confidence            999999999974  55  44443

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.26  E-value=6.1e-11  Score=99.23  Aligned_cols=86  Identities=20%  Similarity=0.303  Sum_probs=68.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----------------------CchHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----------------------DQKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----------------------~~~~l~~~~~~v  324 (361)
                      .++++||+||++||++|+.+.|.++++++.    ++.|+.|+++.                       + ..++ +.|+|
T Consensus        57 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~v  130 (176)
T 3kh7_A           57 KGKPALVNVWGTWCPSCRVEHPELTRLAEQ----GVVIYGINYKDDNAAAIKWLNELHNPYLLSISDAD-GTLG-LDLGV  130 (176)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETT-CHHH-HHHTC
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHC----CCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCc-chHH-HHcCC
Confidence            578999999999999999999999999876    48888888533                       3 5677 78999


Q ss_pred             CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          325 GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++|++++++..+.....+.| ..+.+++.++|+++
T Consensus       131 ~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~l~~~  165 (176)
T 3kh7_A          131 YGAPETYLIDKQGIIRHKIVG-VVDQKVWREQLAPL  165 (176)
T ss_dssp             CSSCEEEEECTTCBEEEEEES-CCCHHHHHHHTHHH
T ss_pred             CCCCeEEEECCCCeEEEEEcC-CCCHHHHHHHHHHH
Confidence            999988888544433445555 67888888887754

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*

Probab=99.22  E-value=1.6e-11  Score=114.78  Aligned_cols=159  Identities=11%  Similarity=0.095  Sum_probs=104.3

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCC--------cHHHHHHHHHHHHHhCCcEEEEcCChHHH----HH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRL--------NPETYRFFDEVEKHFGIRIEYMFPDAVEV----QA   76 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~--------~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~   76 (361)
                      ++++|++|||+||+++ +|+.+.+.++..+|+|++.+        .++..+.++++++++|+++.++.......    ..
T Consensus        18 ~kVvVa~SGGvDSsv~a~lL~~~G~~V~~v~~~~~~~~~~~~~~~s~~d~~~a~~va~~LGIp~~vvd~~~~f~~~v~~~   97 (380)
T 2der_A           18 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFEL   97 (380)
T ss_dssp             CEEEEECCSCSTTHHHHHHHHTTCCEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHTHHH
T ss_pred             CEEEEEEEChHHHHHHHHHHHHcCCeEEEEEEEcCccccccCCCCCHHHHHHHHHHHHHcCCcEEEEeCcHHHHHHHHHH
Confidence            6899999999999777 88888888999999998754        35678999999999999999886543211    11


Q ss_pred             HHHh--cCCCCCCccchhchhhccccHHHHHHHc---cCCEEEEeeeccCCcc-CccCCCcee-cCC----CCcCCcCCC
Q 018045           77 LVRS--KGLFSFYEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPG-TRSEIPVVQ-VDP----VFEGLEGGV  145 (361)
Q Consensus        77 ~~~~--~~~~~~~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~-~R~~~~~~~-~~~----~~~~~~~~~  145 (361)
                      ++..  .|..  + .....|....|...+.+.+.   +.+.++||+.+++... .|.  ..+. .+.    .|.-..-..
T Consensus        98 ~~~ey~~G~t--p-npc~~Cnr~ik~~~l~~~A~~~~Gad~IatGH~a~d~~~~~~~--~l~rg~~~~kdqsy~L~~l~~  172 (380)
T 2der_A           98 FLAEYKAGRT--P-NPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKS--RLLRGLDSNKDQSYFLYTLSH  172 (380)
T ss_dssp             HHHHHHTTCC--C-CHHHHHHHHTTTTHHHHHHHHTTCCSEEECCCSCEEEEETTEE--EEECCSSTTTCCGGGGSSCCH
T ss_pred             HHHHHHcCCC--C-ChhHHHHHHHHHHHHHHHHHhhcCCCEEEEccccccccccchH--HHhcccccccccceeecCCCh
Confidence            1222  2221  1 12234556668777776654   5679999998886310 111  1111 010    010000000


Q ss_pred             CC-eEEEeeCccCcHHHHHHHHHhCCCCC
Q 018045          146 GS-LVKWNPVANVKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       146 ~~-~~~~~Pi~~W~~~dv~~yi~~~~lp~  173 (361)
                      .. ...++||.++++.||.+|++++|||+
T Consensus       173 ~~l~~~i~PL~~~~K~eVr~~A~~~Gl~~  201 (380)
T 2der_A          173 EQIAQSLFPVGELEKPQVRKIAEDLGLVT  201 (380)
T ss_dssp             HHHHHEECCGGGSCHHHHHHHHHHTTCC-
T ss_pred             hhcceeEccCCCCCHHHHHHHHHHcCCCC
Confidence            01 34799999999999999999999985

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.20  E-value=8.3e-11  Score=99.09  Aligned_cols=92  Identities=22%  Similarity=0.383  Sum_probs=71.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----hHHHHHcCCCC------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKLQLG------------------  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~~v~------------------  325 (361)
                      .+++++|+||++||++|+.+.|.++++.+.+++.++.++.|+++..+    ..+. +++++.                  
T Consensus        59 ~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~  137 (186)
T 1jfu_A           59 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFL-KEANLTRLGYFNDQKAKVFQDLKA  137 (186)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHH-HHTTCCTTCCEECTTCHHHHHHHT
T ss_pred             CCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHH-HHcCCCCCceEECCcchHHHHhcc
Confidence            57899999999999999999999999999998557999999988641    3555 666664                  


Q ss_pred             -----CCCeEEEEeCCCCCeeecCCC-CCCHHHHHHHHHHh
Q 018045          326 -----SFPTILFFPKHSSKPIKYPSE-RRDVDSLMAFVDAL  360 (361)
Q Consensus       326 -----~~Pt~~~~~~g~~~~~~~~~~-~~~~~~l~~~i~~~  360 (361)
                           ++|++++++..+.....+.|. ..+.++|.++|+++
T Consensus       138 ~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l  178 (186)
T 1jfu_A          138 IGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA  178 (186)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred             ccccCCCCEEEEECCCCCEEEEEecCCccCHHHHHHHHHHH
Confidence                 899999995443334445552 12478899998875

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.19  E-value=4.9e-11  Score=100.71  Aligned_cols=87  Identities=21%  Similarity=0.318  Sum_probs=70.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-----------------------------CCchHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-----------------------------GDQKEYA  318 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-----------------------------~~~~~l~  318 (361)
                      .++++||+||++||++|+.+.|.++++.+++++. +.|+.|+++                             .+ ..++
T Consensus        32 ~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~-~~~~  109 (188)
T 2cvb_A           32 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDET-QEVA  109 (188)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSS-SHHH
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCc-chHH
Confidence            5789999999999999999999999999999884 999999984                             33 5788


Q ss_pred             HHcCCCCCCCeEEEEe-CCCCCeeecCCC---------CCCHHHHHHHHHHh
Q 018045          319 KQKLQLGSFPTILFFP-KHSSKPIKYPSE---------RRDVDSLMAFVDAL  360 (361)
Q Consensus       319 ~~~~~v~~~Pt~~~~~-~g~~~~~~~~~~---------~~~~~~l~~~i~~~  360 (361)
                       +.|+|.++|++++++ +|+  .+.. |.         ..+.++|.+.|+++
T Consensus       110 -~~~~v~~~P~~~lid~~G~--i~~~-g~~~~~~~~~g~~~~~~l~~~i~~l  157 (188)
T 2cvb_A          110 -KAYRALRTPEVFLFDERRL--LRYH-GRVNDNPKDPSKVQSHDLEAAIEAL  157 (188)
T ss_dssp             -HHTTCCEESEEEEECTTCB--EEEE-ECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred             -HHcCCCCCCeEEEECCCCc--EEEE-EecCCccccccccCHHHHHHHHHHH
Confidence             899999999999995 454  3332 21         23678888888765

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.19  E-value=5.6e-11  Score=104.84  Aligned_cols=93  Identities=14%  Similarity=0.324  Sum_probs=75.7

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCC--ChhHHhhHHHHHHHHHHh---cCCC--eEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPW--CQFCQAMEGSYVELADKL---AGNG--VKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~w--C~~C~~~~p~~~~la~~~---~~~~--v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      ++|.+++.  +-.++++|.||++|  |++|+.+.|.++++++.+   ++ +  +.|+.+|++.+ ++++ ++|+|.++||
T Consensus        15 ~ql~~~~~--~~~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~-~~~v~~~~vd~d~~-~~~~-~~~gv~~~Pt   89 (243)
T 2hls_A           15 RELRETLA--EMVNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNG-GKLLKLNVYYRESD-SDKF-SEFKVERVPT   89 (243)
T ss_dssp             HHHHHHHT--TCCSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETT-EESEEEEEEETTTT-HHHH-HHTTCCSSSE
T ss_pred             HHHHHHHH--hCCCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCC-CceeEEEEecCCcC-HHHH-HhcCCCcCCE
Confidence            44555554  34689999999999  999999999999999884   22 2  99999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +++| +|   ...|.| ..+..++..|+..
T Consensus        90 ~~i~-~g---~~~~~G-~~~~~~l~~fv~~  114 (243)
T 2hls_A           90 VAFL-GG---EVRWTG-IPAGEEIRALVEV  114 (243)
T ss_dssp             EEET-TT---TEEEES-CCCTTHHHHHHHH
T ss_pred             EEEE-CC---ceeEcC-CCcHHHHHHHHHH
Confidence            9999 55   466666 4566677777664

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.19  E-value=7.4e-11  Score=102.30  Aligned_cols=89  Identities=19%  Similarity=0.366  Sum_probs=71.2

Q ss_pred             CCC-cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-----------------------------CCchHH
Q 018045          268 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-----------------------------GDQKEY  317 (361)
Q Consensus       268 ~~~-~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-----------------------------~~~~~l  317 (361)
                      .++ ++||+||++||++|+.+.|.++++++++++.++.|+.|+++                             .. ..+
T Consensus        57 ~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~-~~~  135 (218)
T 3u5r_E           57 KDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDAS-QSV  135 (218)
T ss_dssp             TTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTT-CHH
T ss_pred             CCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCc-cHH
Confidence            456 59999999999999999999999999998756999999994                             33 578


Q ss_pred             HHHcCCCCCCCeEEEEeCCCCCeeecCC----------CCCCHHHHHHHHHHh
Q 018045          318 AKQKLQLGSFPTILFFPKHSSKPIKYPS----------ERRDVDSLMAFVDAL  360 (361)
Q Consensus       318 ~~~~~~v~~~Pt~~~~~~g~~~~~~~~~----------~~~~~~~l~~~i~~~  360 (361)
                      + +.|+|.++|++++++..+. .+ +.|          +..+.++|.+.|+++
T Consensus       136 ~-~~~~v~~~P~~~liD~~G~-i~-~~g~~d~~~~~~~~~~~~~~l~~~i~~l  185 (218)
T 3u5r_E          136 A-KAYGAACTPDFFLYDRERR-LV-YHGQFDDARPGNGKDVTGADLRAAVDAV  185 (218)
T ss_dssp             H-HHHTCCEESEEEEECTTCB-EE-EEECSSSCCTTSCCCCCCHHHHHHHHHH
T ss_pred             H-HHcCCCCCCeEEEECCCCc-EE-EeccccccccccccccCHHHHHHHHHHH
Confidence            8 8999999999999954432 22 322          234678898888765

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=98.81  E-value=2e-12  Score=103.96  Aligned_cols=75  Identities=12%  Similarity=0.274  Sum_probs=60.7

Q ss_pred             CCC-cEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCc------------------------hHHHHH
Q 018045          268 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQ------------------------KEYAKQ  320 (361)
Q Consensus       268 ~~~-~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~------------------------~~l~~~  320 (361)
                      .++ +++|+||++||++|+.+.|.++++++.++.  .++.++.|+++...                        ..++ +
T Consensus        24 ~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  102 (143)
T 2lus_A           24 KDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVT-A  102 (143)
Confidence            466 999999999999999999999999999842  36888888887541                        2678 8


Q ss_pred             cCCCCCCCeEEEEe-CCCCCeeecCC
Q 018045          321 KLQLGSFPTILFFP-KHSSKPIKYPS  345 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~-~g~~~~~~~~~  345 (361)
                      .|+|.++|++++++ +|+  .+...+
T Consensus       103 ~~~v~~~P~~~lid~~G~--i~~~~~  126 (143)
T 2lus_A          103 KYGITGIPALVIVKKDGT--LISMNG  126 (143)
Confidence            99999999999997 666  344443

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=2e-12  Score=106.17  Aligned_cols=88  Identities=10%  Similarity=0.107  Sum_probs=66.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHH-HHHHhc-CCCeEEEEEEcCCCchHHHHHcC----------------------C
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVE-LADKLA-GNGVKVGKFRADGDQKEYAKQKL----------------------Q  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~-la~~~~-~~~v~~~~vd~~~~~~~l~~~~~----------------------~  323 (361)
                      .+++++|.||++||++|+.+.|.+.+ +.+.++ +.++.++.|+++.. .+.. ++|                      +
T Consensus        32 ~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~-~~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~  109 (159)
T 2ls5_A           32 RGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEP-LEKV-LAFAKSTGVTYPLGLDPGADIFAKYA  109 (159)
Confidence            57899999999999999999999998 988887 44799999998876 4433 333                      3


Q ss_pred             --CCCCCeEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 --LGSFPTILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 --v~~~Pt~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                        +.++|+++++ ++|+. ...+.|  .+.+++.++|+++
T Consensus       110 ~~~~~~P~~~lid~~G~i-~~~~~g--~~~~~l~~~l~~l  146 (159)
T 2ls5_A          110 LRDAGITRNVLIDREGKI-VKLTRL--YNEEEFASLVQQI  146 (159)
Confidence              5779999999 56652 333333  5677788887765

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=99.15  E-value=8.3e-12  Score=111.98  Aligned_cols=71  Identities=17%  Similarity=0.312  Sum_probs=57.2

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC------CCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCC
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD------GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~------~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~  345 (361)
                      .+|+||||||++|++++|.|++++++++       .||++      ++ ++++ ++|+|+++||+++  +|+  .  +.|
T Consensus       200 ~vV~F~A~WC~~Ck~l~p~le~lA~~l~-------~Vd~d~~d~~~~~-~~la-~~~gI~~vPT~~i--~G~--~--~~G  264 (291)
T 3kp9_A          200 GGTMYGAYWCPHCQDQKELFGAAFDQVP-------YVECSPNGPGTPQ-AQEC-TEAGITSYPTWII--NGR--T--YTG  264 (291)
T ss_dssp             TCEEEECTTCHHHHHHHHHHGGGGGGSC-------EEESCSSCSSSCC-CHHH-HTTTCCSTTEEEE--TTE--E--EES
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHcC-------EEEEeecCchhhH-HHHH-HHcCCcccCeEEE--CCE--E--ecC
Confidence            3799999999999999999999986542       34444      25 8999 9999999999655  665  2  666


Q ss_pred             CCCCHHHHHHHHH
Q 018045          346 ERRDVDSLMAFVD  358 (361)
Q Consensus       346 ~~~~~~~l~~~i~  358 (361)
                       .++.++|.+|++
T Consensus       265 -~~~~~~L~~~l~  276 (291)
T 3kp9_A          265 -VRSLEALAVASG  276 (291)
T ss_dssp             -CCCHHHHHHHTC
T ss_pred             -CCCHHHHHHHHC
Confidence             799999999874

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.15  E-value=1.8e-10  Score=94.81  Aligned_cols=91  Identities=13%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             CCCc-EEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC---------------------CCchHHHHHcCCC
Q 018045          268 RQEP-WLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD---------------------GDQKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~-vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~---------------------~~~~~l~~~~~~v  324 (361)
                      .++. ++|.|| ++||++|+...|.+.++++++++.++.|+.|++|                     .. ..++ +.|++
T Consensus        27 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~-~~~~-~~~~v  104 (161)
T 3drn_A           27 IGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKRFKEKYKLPFILVSDPD-KKIR-ELYGA  104 (161)
T ss_dssp             TTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCSEEEECTT-SHHH-HHTTC
T ss_pred             cCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCc-HHHH-HHcCC
Confidence            4666 999999 9999999999999999999998767999999987                     34 6788 89999


Q ss_pred             CC----CCeEEEEeCCCCCeeecCCC---CCCHHHHHHHHHHh
Q 018045          325 GS----FPTILFFPKHSSKPIKYPSE---RRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~----~Pt~~~~~~g~~~~~~~~~~---~~~~~~l~~~i~~~  360 (361)
                      .+    +|++++++..+.....+.|.   ..+.+++.+.|+++
T Consensus       105 ~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~l~~l  147 (161)
T 3drn_A          105 KGFILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKALKQI  147 (161)
T ss_dssp             CCSSSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHHHHHH
T ss_pred             CCcCcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHHHHHh
Confidence            99    99999996444333344441   23455666666554

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0

Probab=99.14  E-value=7.2e-11  Score=104.06  Aligned_cols=143  Identities=10%  Similarity=0.079  Sum_probs=93.8

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY   87 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~   87 (361)
                      ++++|++|||.||+++ +|+.+. +.++..++++.+...++..+.++++++.+|++++++.-+ ..+..+...  .+.  
T Consensus        27 ~~vvv~lSGGiDSsv~a~l~~~~~g~~v~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~i~-~~~~~~~~~--~~~--  101 (249)
T 3p52_A           27 QGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQ-SILDAFIKQ--SEN--  101 (249)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHHHTTSEEEEECCSCCSSCHHHHHHHHHHHHHTCEEEECCCH-HHHHHHHTT--CSC--
T ss_pred             CCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEECc-HHHHHHHHh--ccc--
Confidence            6899999999999877 777775 888999999999777788999999999999998776432 222333221  111  


Q ss_pred             ccchhch--hhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHH
Q 018045           88 EDGHQEC--CRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW  163 (361)
Q Consensus        88 ~~~~~~c--c~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~  163 (361)
                      ..+...|  |...+..-+..+.+...  ++.||. ++|..   .....     .++      .+.--++||.+++..||+
T Consensus       102 ~~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tgn-~se~~---~g~~t-----~~g------d~~~~i~PL~~l~K~eV~  166 (249)
T 3p52_A          102 TTLVSLGNFAARIRMSLLYDYSALKNSLVIGTSN-KSELL---LGYGT-----IYG------DLACAFNPIGSLYKSEIY  166 (249)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCC-HHHHH---HTCSC-----TTT------TTCCSEETTTTSCHHHHH
T ss_pred             cCCccHhHHHHHHHHHHHHHHHHHCCCeEEeCCC-HHHHH---ccchh-----hhc------cccCccccccCCcHHHHH
Confidence            1122223  45555666666655443  333443 34431   11110     111      012248999999999999


Q ss_pred             HHHHhCCCC
Q 018045          164 NFLRTMDVP  172 (361)
Q Consensus       164 ~yi~~~~lp  172 (361)
                      ++.+..|+|
T Consensus       167 ~la~~~gip  175 (249)
T 3p52_A          167 ALAKYLNLH  175 (249)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCc
Confidence            999999987

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.13  E-value=1e-10  Score=88.26  Aligned_cols=79  Identities=11%  Similarity=0.185  Sum_probs=64.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--CCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~  345 (361)
                      ...+.++.|+++||++|+.+.+.|++++    . ++.|..||++  .+ +++. ++|+ .++|++  |.+|+  ... .+
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~----~-~i~~~~vdi~~~~~-~el~-~~~g-~~vP~l--~~~g~--~~~-~~   80 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYK----D-RFILQEVDITLPEN-STWY-ERYK-FDIPVF--HLNGQ--FLM-MH   80 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTS----S-SSEEEEEETTSSTT-HHHH-HHSS-SSCSEE--EESSS--EEE-ES
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhh----h-CCeEEEEECCCcch-HHHH-HHHC-CCCCEE--EECCE--EEE-ec
Confidence            4667899999999999999999998764    2 4899999999  77 8999 8999 999986  45776  333 33


Q ss_pred             CCCCHHHHHHHHHHh
Q 018045          346 ERRDVDSLMAFVDAL  360 (361)
Q Consensus       346 ~~~~~~~l~~~i~~~  360 (361)
                       ..+.+.|.++|+++
T Consensus        81 -g~~~~~l~~~l~~~   94 (100)
T 1wjk_A           81 -RVNTSKLEKQLRKL   94 (100)
T ss_dssp             -SCCHHHHHHHHHSS
T ss_pred             -CCCHHHHHHHHHHH
Confidence             37899999999864

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A

Probab=99.12  E-value=1.6e-10  Score=103.36  Aligned_cols=144  Identities=12%  Similarity=0.077  Sum_probs=95.6

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY   87 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~   87 (361)
                      ++++|++|||+||+++ +|+.+.. .++..++++++...++..++++++++.+|++++++..+. ....+......  . 
T Consensus        26 ~~vvv~lSGGiDSsv~~~l~~~~~~~~v~av~~~~~~~~~~e~~~a~~~a~~lgi~~~~i~i~~-~~~~~~~~~~~--~-  101 (268)
T 1xng_A           26 KKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIAP-YDAIFSSHFKD--A-  101 (268)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCHH-HHHHHHHHCTT--C-
T ss_pred             CCEEEEccCcHHHHHHHHHHHHhCCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEEeChH-HHHHHHHHhhh--c-
Confidence            6899999999999877 7777764 678899999998789999999999999999988774332 12233322211  0 


Q ss_pred             ccchhch--hhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHH
Q 018045           88 EDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIW  163 (361)
Q Consensus        88 ~~~~~~c--c~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~  163 (361)
                       .+...|  |...+...+.+..+  +..++.||. .+|.. .-..       ..++      .+...++||.+|+..||+
T Consensus       102 -~~~~~~n~~~r~R~~~l~~~A~~~g~~vl~tg~-~~E~~-~Gy~-------t~~g------d~~~~i~PL~~l~K~ev~  165 (268)
T 1xng_A          102 -SLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSN-KSERM-LGYG-------TLFG------DLACAINPIGELFKTEVY  165 (268)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHH-HTCS-------CTTT------TTCCSEETTTTSCHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHCCCEEEECCc-HHHHh-cCcc-------cccC------CCCeeEEecCCCCHHHHH
Confidence             112223  23344455555544  455666665 35542 1111       0111      122358999999999999


Q ss_pred             HHHHhCCCCC
Q 018045          164 NFLRTMDVPI  173 (361)
Q Consensus       164 ~yi~~~~lp~  173 (361)
                      +|++..|+|.
T Consensus       166 ~la~~~gip~  175 (268)
T 1xng_A          166 ELARRLNIPK  175 (268)
T ss_dssp             HHHHHTTCCH
T ss_pred             HHHHHcCCcH
Confidence            9999999983

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=99.11  E-value=2.4e-10  Score=112.00  Aligned_cols=97  Identities=11%  Similarity=0.111  Sum_probs=80.6

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      ...++++.++.+.+  ...+..++.||++||++|+.+.|.+++++..+.  ++.+.+||.+.+ ++++ ++|+|.++||+
T Consensus       101 ~~~~~~~~~~~i~~--~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~~~-~~~~-~~~~i~svPt~  174 (521)
T 1hyu_A          101 PSKEAQSLLEQIRD--IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTF-QNEI-TERNVMGVPAV  174 (521)
T ss_dssp             CCCSCHHHHHHHHH--CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTC-HHHH-HHTTCCSSSEE
T ss_pred             CCCCCHHHHHHHHh--cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEechhh-HHHH-HHhCCCccCEE
Confidence            34577777777654  235677999999999999999999999999875  599999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++  +|+  .+.. | ..+.++|.++|++
T Consensus       175 ~i--~g~--~~~~-G-~~~~~~l~~~l~~  197 (521)
T 1hyu_A          175 FV--NGK--EFGQ-G-RMTLTEIVAKVDT  197 (521)
T ss_dssp             EE--TTE--EEEE-S-CCCHHHHHHHHCC
T ss_pred             EE--CCE--EEec-C-CCCHHHHHHHHhh
Confidence            77  776  3433 4 6899999999864

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.10  E-value=4.3e-10  Score=93.15  Aligned_cols=90  Identities=14%  Similarity=0.139  Sum_probs=71.2

Q ss_pred             CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcC----CCeEEEEEEcCCC--c-------------------------h
Q 018045          268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAG----NGVKVGKFRADGD--Q-------------------------K  315 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~--~-------------------------~  315 (361)
                      .++++||+||++||++ |+.+.|.++++.+.++.    .++.|+.|++|..  .                         .
T Consensus        25 ~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~~~~  104 (171)
T 2rli_A           25 RGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVA  104 (171)
T ss_dssp             TTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHHHHH
T ss_pred             CCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 99999999999999962    3799999998742  0                         1


Q ss_pred             HHHHHcCCCCCCC---------------eEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          316 EYAKQKLQLGSFP---------------TILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       316 ~l~~~~~~v~~~P---------------t~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++ +.|+|..+|               +++++ ++|+ ....+.| ..+.++|.+.|+++
T Consensus       105 ~~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~l  162 (171)
T 2rli_A          105 QAS-HSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGL-FTDYYGR-SRSAEQISDSVRRH  162 (171)
T ss_dssp             HHH-HHSCCCCEECCCCSSCCCCEECCCEEEEECTTSC-EEEEEES-SCCHHHHHHHHHHH
T ss_pred             HHH-HHhCeEEEecCCCCCCCeEEeccceEEEECCCCe-EEEEECC-CCCHHHHHHHHHHH
Confidence            577 789999888               77777 4555 2344444 68899999988865

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.09  E-value=3.6e-10  Score=92.86  Aligned_cols=90  Identities=9%  Similarity=0.101  Sum_probs=71.3

Q ss_pred             CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcC----CCeEEEEEEcCCCc---------------------------h
Q 018045          268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAG----NGVKVGKFRADGDQ---------------------------K  315 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~~---------------------------~  315 (361)
                      .++++||+||++||++ |+.+.|.++++.+.+++    .++.++.|++|...                           .
T Consensus        22 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d~~~  101 (164)
T 2ggt_A           22 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD  101 (164)
T ss_dssp             TTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHHHHH
T ss_pred             CCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHHHHH
Confidence            4789999999999998 99999999999999964    37999999987520                           1


Q ss_pred             HHHHHcCCCCCCC---------------eEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          316 EYAKQKLQLGSFP---------------TILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       316 ~l~~~~~~v~~~P---------------t~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .++ +.|+|..+|               +++++. +|+ ....+.| ..+.++|.+.|+++
T Consensus       102 ~~~-~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~-i~~~~~g-~~~~~~l~~~l~~l  159 (164)
T 2ggt_A          102 QVA-RAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGE-FLDYFGQ-NKRKGEIAASIATH  159 (164)
T ss_dssp             HHH-HTTTCCEEEEEECTTSCEEEEECCEEEEECTTSC-EEEEEET-TCCHHHHHHHHHHH
T ss_pred             HHH-HhcCeEEEecCCCCCCCeeEeccceEEEECCCCe-EEEEeCC-CCCHHHHHHHHHHH
Confidence            377 889999999               677774 555 2344444 68899999888765

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.09  E-value=3.7e-10  Score=95.63  Aligned_cols=91  Identities=15%  Similarity=0.218  Sum_probs=68.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cch---HHH-H-----------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQK---EYA-K-----------------  319 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~~---~l~-~-----------------  319 (361)
                      .++++||+||++||++|+.+.|.++++.+++++.++.++.|+++.       ...   .++ .                 
T Consensus        47 ~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~~~~  126 (190)
T 2vup_A           47 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  126 (190)
T ss_dssp             TTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeecccCcc
Confidence            578999999999999999999999999999987569999999873       101   111 0                 


Q ss_pred             -----------HcCCCCCCC------eEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          320 -----------QKLQLGSFP------TILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 -----------~~~~v~~~P------t~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                 ..|++.++|      +++++ ++|+ ....+.| ..+.++|.+.|+++
T Consensus       127 ~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~-i~~~~~g-~~~~~~l~~~i~~l  183 (190)
T 2vup_A          127 NAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGV-PVERFSP-GASVKDIEKKLIPL  183 (190)
T ss_dssp             TBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSC-EEEEECT-TCCHHHHHHHHHHH
T ss_pred             cccHHHHHHHhhcCCcCCCccccccceEEEECCCCc-EEEEECC-CCCHHHHHHHHHHH
Confidence                       124778889      77777 5555 2444555 67899999988865

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}

Probab=99.09  E-value=5.4e-11  Score=116.21  Aligned_cols=166  Identities=15%  Similarity=0.218  Sum_probs=99.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcH-HHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH-hcCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNP-ETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR-SKGLFS   85 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~p-et~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~-~~~~~~   85 (361)
                      ++++|++|||+||+++ +|+.+. +.++.++|+|+|...+ |..+.++.+++++|++++++.....    +.. ..+.. 
T Consensus       231 ~kvlvalSGGvDSsvla~ll~~~~G~~v~av~vd~g~~~~~e~~~~~~~~a~~lgi~~~vv~~~~~----~~~~l~g~~-  305 (527)
T 3tqi_A          231 EQVIVGLSGGVDSAVTATLVHKAIGDQLVCVLVDTGLLRLNEVDEVLNVFQKHLGAKVICVDAKDR----FMKALKGIS-  305 (527)
T ss_dssp             SCEEEECTTTHHHHHHHHHHHHHHGGGEEEEEECCSCSCTTHHHHHHHHHTTSSCCEEEEECCHHH----HHSSSSSCC-
T ss_pred             CeEEEEEecCcCHHHHHHHHHHHhCCeEEEEEeccCCCChhHHHHHHHHHHHHcCCcEEEEeChHH----HHHhhcCCC-
Confidence            6899999999999877 788775 8889999999997654 4545555699999999988854321    111 11111 


Q ss_pred             CCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCC----ceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045           86 FYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIP----VVQVDPVFEGLEGGVGSLVKWNPVANVKG  159 (361)
Q Consensus        86 ~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~----~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~  159 (361)
                      .+......|+. .....+.+..+  +.+.+++|+..+|-...+....    .+.......+.. ...+...++||.++++
T Consensus       306 ~~~~~r~~~~~-~~~~~~~~~A~~~g~~~la~Gh~~dD~~Et~~~~~g~~~~ik~~~~l~gl~-~~~~~~iirPL~~l~K  383 (527)
T 3tqi_A          306 DPEEKRKIAGE-QFIRVFEEQAKKLNVKWLGQGTIYPDVIESAKTKTGKGHIIKTHHNVGGLP-LNMELKLIEPLRELFK  383 (527)
T ss_dssp             CHHHHHHHHHH-HHHHHHHHTTTTTTCCEEECCCCHHHHHCC---------------------------CEECTTTTCCH
T ss_pred             ChhhhhhhhHH-HHHHHHHHHHHHcCCCEEEccccCCccccccccCCChhheeeeecccccCc-ccccCccccchhcCCH
Confidence            11111222332 23444555444  5678999997776421110000    000000000000 0012336899999999


Q ss_pred             HHHHHHHHhCCCCCCccccCCCC
Q 018045          160 NDIWNFLRTMDVPINSLHSQGYI  182 (361)
Q Consensus       160 ~dv~~yi~~~~lp~~~lY~~g~~  182 (361)
                      +||.+|.+++|+|+.-.+.+-|+
T Consensus       384 ~EIr~~a~~lGlp~~~v~~~P~p  406 (527)
T 3tqi_A          384 DEVRKLGLELGLPADLIYRHPFP  406 (527)
T ss_dssp             HHHHHHHHHHTCCHHHHTCCCCC
T ss_pred             HHHHHHHHHcCCChhhhccCCCC
Confidence            99999999999998666665444

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.08  E-value=6.8e-10  Score=93.75  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=67.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------CchHHHH--H-c----------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQKEYAK--Q-K----------------  321 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~~~l~~--~-~----------------  321 (361)
                      .++++||+||++||++|+.+.|.+.++.+++++.++.++.|+++.       ....+..  + +                
T Consensus        45 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  124 (187)
T 3dwv_A           45 KGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGE  124 (187)
T ss_dssp             TTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBTTHHHHSCCBCCCCSSCBBCCBCCSCC
T ss_pred             CCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCCceeeccccCCc
Confidence            579999999999999999999999999999987679999998862       1122220  1 1                


Q ss_pred             ----------------CCCCCCC---eEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          322 ----------------LQLGSFP---TILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       322 ----------------~~v~~~P---t~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                      +++..+|   ++++++ +|+ ....+.| ..+.++|.+.|+++
T Consensus       125 ~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~-i~~~~~g-~~~~~~l~~~i~~l  181 (187)
T 3dwv_A          125 NAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGV-PVERFSP-GASVKDIEEKLIPL  181 (187)
T ss_dssp             -CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSC-EEEEECT-TCCHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhcCCccCCCccccceeEEEECCCCC-EEEEECC-CCCHHHHHHHHHHH
Confidence                            1334667   888884 555 3445555 68899999999876

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}

Probab=99.08  E-value=3.1e-10  Score=100.07  Aligned_cols=146  Identities=16%  Similarity=0.093  Sum_probs=94.3

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCC-
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFY-   87 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~-   87 (361)
                      ++++|++|||.||+++ +|+.+...+...++++++...++..++++++++++|++++++.-.. .+..+...-.. .+. 
T Consensus        30 ~~vvv~lSGGiDSsv~a~l~~~~~~~~~av~~~~~~~~~~~~~~a~~~a~~lgi~~~~v~~~~-~~~~~~~~~~~-~~~~  107 (249)
T 3fiu_A           30 EGFVIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQHQDMQDALELIEMLNIEHYTISIQP-AYEAFLASTQS-FTNL  107 (249)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHTTSCEEEEECCCTTSCHHHHHHHHHHHHHHTCEEEECCCHH-HHHHHHHHTGG-GC--
T ss_pred             CCEEEEecCcHHHHHHHHHHHHhCCCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEEChH-HHHHHHHHHHh-hccC
Confidence            6899999999999877 8888876665589999987778899999999999999988764332 23333221100 000 


Q ss_pred             ccchhchh-----hccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045           88 EDGHQECC-----RVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN  160 (361)
Q Consensus        88 ~~~~~~cc-----~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~  160 (361)
                      ...++.||     ...+..-+..+.+  +..++.|| .++|.   +........+           +.--++||.+++..
T Consensus       108 ~~~~~~~~~~Ni~~r~R~~~l~~~A~~~g~~vl~TG-n~sE~---~~G~~t~~gd-----------~~~~i~PL~~l~K~  172 (249)
T 3fiu_A          108 QNNRQLVIKGNAQARLRMMYLYAYAQQYNRIVIGTD-NACEW---YMGYFTKFGD-----------GAADILPLVNLKKS  172 (249)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCC-CHHHH---HHTCSCTTTT-----------TCCSBCTTTTCCHH
T ss_pred             CCCcChhHHHHHHHHHHHHHHHHHHHHcCCEEEECC-CHHHH---hcCchhccCC-----------CCcceeecccCcHH
Confidence            01223344     3444445555544  44466677 45554   2222111111           12258999999999


Q ss_pred             HHHHHHHhCCCC
Q 018045          161 DIWNFLRTMDVP  172 (361)
Q Consensus       161 dv~~yi~~~~lp  172 (361)
                      ||+++.+..|||
T Consensus       173 eVr~lA~~lglp  184 (249)
T 3fiu_A          173 QVFELGKYLDVP  184 (249)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCc
Confidence            999999999986

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.07  E-value=2.1e-11  Score=88.08  Aligned_cols=61  Identities=18%  Similarity=0.285  Sum_probs=48.6

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-CCchHHHHHcCCCCCCCeEEEEeCCC
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-GDQKEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-~~~~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      -++.||++||++|+.+.|.++++++.++. .+.++.||.+ .. .+++ ++|++.++||+++  +|+
T Consensus         3 ~~~~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~-~~~~-~~~gv~~vPt~~i--~g~   64 (80)
T 2k8s_A            3 SKAIFYHAGCPVCVSAEQAVANAIDPSKY-TVEIVHLGTDKAR-IAEA-EKAGVKSVPALVI--DGA   64 (80)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHSCTTTE-EEEEEETTTCSST-HHHH-HHHTCCEEEEEEE--TTE
T ss_pred             ceEEEeCCCCCchHHHHHHHHHHHHhcCC-eEEEEEecCChhh-HHHH-HHcCCCcCCEEEE--CCE
Confidence            37889999999999999999998876643 3555555554 35 7888 8999999999987  665

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.06  E-value=2.7e-10  Score=94.64  Aligned_cols=90  Identities=19%  Similarity=0.239  Sum_probs=66.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC--------Cc--hHHH-H-----------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--------DQ--KEYA-K-----------------  319 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--------~~--~~l~-~-----------------  319 (361)
                      .++++||+|||+||++|+ ..|.+.++.+++++.++.++.|+++.        .+  ..+. +                 
T Consensus        31 ~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~~~~  109 (171)
T 3cmi_A           31 KGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGG  109 (171)
T ss_dssp             TTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBSSST
T ss_pred             CCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccCCCc
Confidence            578999999999999999 99999999999987569999998741        00  1111 0                 


Q ss_pred             -----------HcCCCCCCC------eEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          320 -----------QKLQLGSFP------TILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 -----------~~~~v~~~P------t~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                 +.|++.++|      +++++ ++|+ ....+.| ..+.++|.+.|+++
T Consensus       110 ~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~-i~~~~~g-~~~~~~l~~~i~~l  166 (171)
T 3cmi_A          110 NEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGK-VYERYSS-LTKPSSLSETIEEL  166 (171)
T ss_dssp             TBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSC-EEEEECT-TSCGGGGHHHHHHH
T ss_pred             cchHHHHHHHhccCCcCCCCcccccceEEEECCCCC-EEEEeCC-CCCHHHHHHHHHHH
Confidence                       247888999      77777 5555 2444555 67888888888765

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.06  E-value=2.9e-10  Score=94.02  Aligned_cols=90  Identities=13%  Similarity=0.206  Sum_probs=68.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---hHHHHH-cC--------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQ-KL--------------  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~-~~--------------  322 (361)
                      .++++||+||++||++|+.+.|.++++++++++.++.++.|+++.       ..   ..++ + ++              
T Consensus        31 ~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~  109 (170)
T 2p5q_A           31 KGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFV-CTRFKSEFPIFDKIDVNG  109 (170)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHH-HHHTCCCSCBBCCCBSSS
T ss_pred             CCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHH-HHhcCCCceeEeeeccCC
Confidence            578999999999999999999999999999987569999999863       10   2233 2 32              


Q ss_pred             ---------------CC--CCCC---eEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 ---------------QL--GSFP---TILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ---------------~v--~~~P---t~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                     ++  .++|   +++++ ++|+ ....+.| ..+.++|.+.|+++
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~-i~~~~~g-~~~~~~l~~~i~~l  166 (170)
T 2p5q_A          110 ENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQ-VVDRYYP-TTSPLSLERDIKQL  166 (170)
T ss_dssp             TTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSC-EEEEECT-TSCGGGGHHHHHHH
T ss_pred             CchHHHHHHHHhcCCCccCCcccccccEEEECCCCC-EEEeeCC-CCCHHHHHHHHHHH
Confidence                           34  6678   77777 4555 2444555 67888899988876

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}

Probab=99.05  E-value=2.8e-10  Score=101.22  Aligned_cols=144  Identities=17%  Similarity=0.167  Sum_probs=93.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      ++++|++|||+||+++ +|+.+. + .++.++++++|..  +..++++++++.+|++++++..+. .+..+.......  
T Consensus        23 ~~vvv~lSGGiDSs~~~~l~~~~~g~~~v~av~~~~~~~--~~~~~a~~~a~~lgi~~~~i~i~~-~~~~~~~~l~~~--   97 (257)
T 2e18_A           23 NGVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFEN--KDVEDAKLVAEKLGIGYKVINIKP-IVDSFVENLELN--   97 (257)
T ss_dssp             TCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCSSCS--THHHHHHHHHHHHTCEEEECCCHH-HHHHHHHHHCSC--
T ss_pred             CcEEEEecCCHHHHHHHHHHHHhcCCCcEEEEEeCCCCc--hHHHHHHHHHHHhCCCEEEEEChH-HHHHHHHHhccc--
Confidence            6899999999999877 777775 3 5788999999964  788999999999999988764432 122232222110  


Q ss_pred             Cccchhch--hhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHH
Q 018045           87 YEDGHQEC--CRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDI  162 (361)
Q Consensus        87 ~~~~~~~c--c~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv  162 (361)
                       ..+...|  |...+...+.+..+  +..++.||...++..  -...       .++      .+...++||.+|+..||
T Consensus        98 -~~~~~~~n~~ar~r~~~l~~~A~~~g~~vl~tg~~~e~~~--Gy~t-------~~g------~~~~~i~Pl~~l~K~ev  161 (257)
T 2e18_A           98 -LDRKGLGNIMSRTRMIMLYAHANSLGRIVLGTSNRSEFLT--GYFT-------KWG------DGASDYAPIINLYKTEV  161 (257)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHTCEEECCCCHHHHHH--TCSC-------TTS------TTCSSBCTTTTSCHHHH
T ss_pred             -cccchhHHHHHHHHHHHHHHHHHHcCCEEEEcCchhHHhc--CCee-------ccC------CCccCEeecCCCcHHHH
Confidence             0111222  22344444555444  556777887654321  1110       110      12235899999999999


Q ss_pred             HHHHHhCCCCCC
Q 018045          163 WNFLRTMDVPIN  174 (361)
Q Consensus       163 ~~yi~~~~lp~~  174 (361)
                      ++|.+.+|+|+.
T Consensus       162 ~~la~~~gip~~  173 (257)
T 2e18_A          162 WEIAKRIGVPER  173 (257)
T ss_dssp             HHHHHHHTCCHH
T ss_pred             HHHHHHcCCCHH
Confidence            999999999853

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.03  E-value=4.7e-10  Score=95.36  Aligned_cols=92  Identities=14%  Similarity=0.254  Sum_probs=72.7

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~  322 (361)
                      .++++||+|| ++||++|+.+.|.+.++.+.+++.++.|+.|+++..                        +..++ +.|
T Consensus        44 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~  122 (195)
T 2bmx_A           44 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELS-QAA  122 (195)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHH-HHH
T ss_pred             CCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhccccCCceeEEeCCchHHH-HHh
Confidence            4789999999 999999999999999999999865799999998741                        14677 789


Q ss_pred             CCC-----CCCeEEEEeCCCCCeeecCCC---CCCHHHHHHHHHHh
Q 018045          323 QLG-----SFPTILFFPKHSSKPIKYPSE---RRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~-----~~Pt~~~~~~g~~~~~~~~~~---~~~~~~l~~~i~~~  360 (361)
                      ++.     ++|++++++..+.....+.|.   ..+.++|.+.|+++
T Consensus       123 ~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  168 (195)
T 2bmx_A          123 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDAL  168 (195)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             CCcccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            999     999999996433323333331   23789999998875

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.03  E-value=9.8e-10  Score=90.70  Aligned_cols=91  Identities=15%  Similarity=0.216  Sum_probs=66.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---hHH-HHHcC--------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEY-AKQKL--------------  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l-~~~~~--------------  322 (361)
                      .++++||+||++||++|+...|.++++.+.+++.++.++.|+++.       ..   ..+ . +++              
T Consensus        30 ~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~  108 (169)
T 2v1m_A           30 RGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVT-EKYGVQFDMFSKIKVNG  108 (169)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHH-HHHCCCSEEBCCCCCSS
T ss_pred             CCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCHHHHHHHHH-HhcCCCCceEEEEeecC
Confidence            578999999999999999999999999999987569999999863       10   112 1 111              


Q ss_pred             ---------------C-----CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 ---------------Q-----LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ---------------~-----v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                     +     |..+|+++++...+.....+.| ..+.++|.+.|+++
T Consensus       109 ~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~i~~l  165 (169)
T 2v1m_A          109 SDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSP-TTAPYDIEGDIMEL  165 (169)
T ss_dssp             TTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECT-TSCGGGGHHHHHHH
T ss_pred             ccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCC-CCCHHHHHHHHHHH
Confidence                           3     4456888888544333444555 67788888888765

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.02  E-value=2.3e-10  Score=96.16  Aligned_cols=90  Identities=18%  Similarity=0.188  Sum_probs=67.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---hHHHHHc-C--------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQK-L--------------  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~~-~--------------  322 (361)
                      .++++||+||++||++|+.+.|.++++++++++.++.++.|+++.       ..   ..++ ++ +              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~-~~~~~~~~p~~~~~d~~g  126 (181)
T 2p31_A           48 RGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFA-RRTYSVSFPMFSKIAVTG  126 (181)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHH-HHHHCCCSCBBCCCCCSS
T ss_pred             CCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHH-HhhcCCCceeEeecccCC
Confidence            578999999999999999999999999999987569999999863       10   1233 22 1              


Q ss_pred             ---------CCCCCC-------eEEEE-eCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 ---------QLGSFP-------TILFF-PKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ---------~v~~~P-------t~~~~-~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                               .+.++|       +++++ ++|+ ....+.| ..+.++|.+.|+++
T Consensus       127 ~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~-i~~~~~g-~~~~~~l~~~i~~l  179 (181)
T 2p31_A          127 TGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGK-VVGAWDP-TVSVEEVRPQITAL  179 (181)
T ss_dssp             TTSCHHHHHHHHHHSCCCCSTTCEEEECTTSC-EEEEECT-TSCHHHHHHHHHTT
T ss_pred             ccchhhhhhhhhcCCCccccceeEEEEcCCCC-EEEEeCC-CCCHHHHHHHHHHH
Confidence                     134578       66666 5555 2444555 68899999999876

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.02  E-value=3.1e-10  Score=96.75  Aligned_cols=92  Identities=13%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .+++++|+|| ++||++|+.+.|.+.++++++++.++.++.|++|..                           +..++ 
T Consensus        32 ~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-  110 (198)
T 1zof_A           32 GKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS-  110 (198)
T ss_dssp             CSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH-
T ss_pred             CCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhhhhcccccCceeEEEECCchHHH-
Confidence            4789999999 999999999999999999999765799999998741                           15788 


Q ss_pred             HcCCCC-----CCCeEEEEeCCCCCeeecCCC---CCCHHHHHHHHHHh
Q 018045          320 QKLQLG-----SFPTILFFPKHSSKPIKYPSE---RRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~-----~~Pt~~~~~~g~~~~~~~~~~---~~~~~~l~~~i~~~  360 (361)
                      +.|++.     ++|++++++..+.....+.|.   ..+.++|.+.|+++
T Consensus       111 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  159 (198)
T 1zof_A          111 RDYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (198)
T ss_dssp             HHTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HHhCCcccCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            899999     999999996444323333331   13688999988875

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.02  E-value=6.5e-10  Score=93.44  Aligned_cols=90  Identities=16%  Similarity=0.128  Sum_probs=67.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---hHHHHHcC---------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKL---------------  322 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~~~---------------  322 (361)
                      .++++||+||++||++|+.+.|.++++.+++++.++.|+.|+++.       ..   ..++ +++               
T Consensus        46 ~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~-~~~~~~~p~~~~~d~~~~  124 (183)
T 2obi_A           46 RGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGD  124 (183)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHH-HTTTCCSEEBCCCCCSST
T ss_pred             CCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCCHHHHHHHH-HHcCCCceEEeeeccCCc
Confidence            578999999999999999999999999999987569999998862       10   1122 221               


Q ss_pred             ----------------C-----CCCCCeEEEEe-CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 ----------------Q-----LGSFPTILFFP-KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ----------------~-----v~~~Pt~~~~~-~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                      +     |..+|+++++. +|+ ....+.| ..+.++|.+.|+++
T Consensus       125 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~-i~~~~~g-~~~~~~l~~~i~~l  182 (183)
T 2obi_A          125 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGC-VVKRYGP-MEEPLVIEKDLPHY  182 (183)
T ss_dssp             TSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSC-EEEEECT-TSCTHHHHTTSGGG
T ss_pred             chhHHHHHhhccCCCCCcccccccccceEEEECCCCC-EEEEeCC-CCCHHHHHHHHHHh
Confidence                            2     34469988885 555 3444555 67888999888775

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.02  E-value=7.3e-10  Score=90.78  Aligned_cols=91  Identities=11%  Similarity=0.084  Sum_probs=70.6

Q ss_pred             CCC-cEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----------------------CchHHHHHcC
Q 018045          268 RQE-PWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----------------------DQKEYAKQKL  322 (361)
Q Consensus       268 ~~~-~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----------------------~~~~l~~~~~  322 (361)
                      .++ +++|+|| ++||++|+.+.|.+.++++.+++.++.++.|++|.                       + ..++ +.|
T Consensus        34 ~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~-~~~  111 (160)
T 1xvw_A           34 RGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPH-GAVS-QAY  111 (160)
T ss_dssp             TTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTT-THHH-HHT
T ss_pred             cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCCHHHHHHHHHhcCCCceEEecCCcC-hHHH-HHc
Confidence            355 8999998 99999999999999999999976579999999874                       4 6788 899


Q ss_pred             CCC----CCC--eEEEE-eCCCCCeeecCCC---CCCHHHHHHHHHHhC
Q 018045          323 QLG----SFP--TILFF-PKHSSKPIKYPSE---RRDVDSLMAFVDALR  361 (361)
Q Consensus       323 ~v~----~~P--t~~~~-~~g~~~~~~~~~~---~~~~~~l~~~i~~~~  361 (361)
                      ++.    ++|  +++++ ++|+. ...+.|.   ..+.+++.+.|++++
T Consensus       112 ~v~~~~~~~p~~~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~~l~~l~  159 (160)
T 1xvw_A          112 GVFNEQAGIANRGTFVVDRSGII-RFAEMKQPGEVRDQRLWTDALAALT  159 (160)
T ss_dssp             TCEETTTTEECSEEEEECTTSBE-EEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             CCccccCCCeeeeEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHhc
Confidence            998    999  77777 45552 3334342   236788888887764

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.02  E-value=4e-10  Score=95.05  Aligned_cols=91  Identities=16%  Similarity=0.159  Sum_probs=72.2

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~  322 (361)
                      .++++||+|| ++||++|+.+.|.+.++++++++.++.++.|+++..                        +..++ +.|
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~  108 (187)
T 1we0_A           30 KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVGSIEYIMIGDPSQTIS-RQF  108 (187)
T ss_dssp             SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHHTCCSEEEECTTCHHH-HHT
T ss_pred             CCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHHhccccCCCceEEECCchHHH-HHh
Confidence            4689999999 999999999999999999999865699999998751                        15678 889


Q ss_pred             CCC------CCCeEEEEe-CCCCCeeecCCC---CCCHHHHHHHHHHh
Q 018045          323 QLG------SFPTILFFP-KHSSKPIKYPSE---RRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~------~~Pt~~~~~-~g~~~~~~~~~~---~~~~~~l~~~i~~~  360 (361)
                      ++.      ++|++++++ +|+. ...+.|.   ..+.++|.+.|+++
T Consensus       109 ~v~~~~~g~~~P~~~lid~~G~i-~~~~~g~~~~~~~~~~l~~~l~~l  155 (187)
T 1we0_A          109 DVLNEETGLADRGTFIIDPDGVI-QAIEINADGIGRDASTLINKVKAA  155 (187)
T ss_dssp             TCEETTTTEECEEEEEECTTSBE-EEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             CCCcCCCCceeeEEEEECCCCeE-EEEEecCCCCCCCHHHHHHHHHHH
Confidence            998      999999995 5552 3333331   13788888888765

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.01  E-value=9e-10  Score=80.13  Aligned_cols=74  Identities=16%  Similarity=0.301  Sum_probs=59.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCC--CCCCCeEEEEeCCCCCeeecCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQ--LGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~--v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      ++.|+++||++|+.+.+.++++++.+++  +.+..+|++.+.   .++. ++++  +.++|++  |.+|+  .+   ++ 
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~--i~~~~vdi~~~~~~~~~l~-~~~~~~~~~vP~i--~~~g~--~i---~~-   71 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIRAEGITKEDLQ-QKAGKPVETVPQI--FVDQQ--HI---GG-   71 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHHHHTCCSHHHH-HHTCCCSCCSCEE--EETTE--EE---ES-
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCCC--ceEEEEecccChHHHHHHH-HHhCCCCceeCeE--EECCE--EE---EC-
Confidence            7889999999999999999999988764  999999997651   3788 8898  9999998  34665  33   22 


Q ss_pred             CCHHHHHHHHHH
Q 018045          348 RDVDSLMAFVDA  359 (361)
Q Consensus       348 ~~~~~l~~~i~~  359 (361)
                        .++|.+++++
T Consensus        72 --~~~l~~~~~~   81 (85)
T 1ego_A           72 --YTDFAAWVKE   81 (85)
T ss_dssp             --SHHHHHHHHH
T ss_pred             --HHHHHHHHHH
Confidence              2678888765

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.00  E-value=3.2e-10  Score=93.94  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcCC---CeEEEEEEcCCC--c-------------------------hH
Q 018045          268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAGN---GVKVGKFRADGD--Q-------------------------KE  316 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~~---~v~~~~vd~~~~--~-------------------------~~  316 (361)
                      .++++||+||++||++ |+.+.|.+.++.+.+++.   ++.|+.|+++.+  .                         ..
T Consensus        34 ~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~~~~  113 (172)
T 2k6v_A           34 QDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEAVRE  113 (172)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHHHHH
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHHHHH
Confidence            5789999999999997 999999999999998742   699999998743  1                         13


Q ss_pred             HHHHcCC---------------CCCCCeEEEEeCCCCCeeecCCCCC--CHHHHHHHHHHh
Q 018045          317 YAKQKLQ---------------LGSFPTILFFPKHSSKPIKYPSERR--DVDSLMAFVDAL  360 (361)
Q Consensus       317 l~~~~~~---------------v~~~Pt~~~~~~g~~~~~~~~~~~~--~~~~l~~~i~~~  360 (361)
                      ++ +.|+               |.++|+++++++|+ ....+.| ..  +.++|.+.|+++
T Consensus       114 ~~-~~~gv~~~~~~~~~~~~~~i~~~P~~~lid~G~-i~~~~~g-~~~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          114 AA-QTFGVFYQKSQYRGPGEYLVDHTATTFVVKEGR-LVLLYSP-DKAEATDRVVADLQAL  171 (172)
T ss_dssp             HH-HHHTCCEEEEEEEETTEEEEEECCCEEEEETTE-EEEEECH-HHHTCHHHHHHHHHHC
T ss_pred             HH-HhcCeEEEeccCCCCCCceEecCCEEEEEECCE-EEEEECC-CCCCCHHHHHHHHHHh
Confidence            44 4554               46889999999444 3444554 56  899999999886

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1

Probab=99.00  E-value=7.5e-10  Score=104.93  Aligned_cols=145  Identities=10%  Similarity=0.116  Sum_probs=95.6

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-CCcHHHHHHHHHHHHHh-----CCcEEEEcCChHHHHHHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHF-----GIRIEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-~~~pet~~~v~~~~~~~-----g~~i~~~~p~~~~~~~~~~~~~   82 (361)
                      ++++|++|||+||+++ +++.+.+.++.++|+|++ +..++..+.+.++++.+     |++++++..... .......  
T Consensus       188 ~kvlvalSGGvDS~vll~ll~~~G~~v~av~v~~~~~~~~~~~~~v~~~a~~l~~~~ggi~~~vv~~~~~-~~~i~~~--  264 (413)
T 2c5s_A          188 GKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEV-QKTINKE--  264 (413)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHH-HHHHHHH--
T ss_pred             CeEEEEeCCCChHHHHHHHHHHcCCcEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcHH-HHHHHhc--
Confidence            5799999999999877 888888888889999986 44467778888888888     899888754322 1122111  


Q ss_pred             CCCCCccchhchhhcccc---HHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           83 LFSFYEDGHQECCRVRKV---RPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~---~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      .   +   ...-|..+|.   ..+.+..+  +.+++++|+..+|-. .............        .+...++||+.+
T Consensus       265 ~---~---~~~~c~~~Rr~~~~~~~~~A~~~g~~~I~tG~~~dD~a-e~~l~~l~~~~~~--------~~~~virPL~~l  329 (413)
T 2c5s_A          265 I---P---SSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVA-SQTLDSMHTINEV--------TNYPVIRPLITM  329 (413)
T ss_dssp             S---C---GGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTT-SCCHHHHHHHGGG--------CCSCEECTTTTC
T ss_pred             C---C---cccHHHHHHHHHHHHHHHHHHHcCCCEEEEcccchhhH-HHHHHHHhccccc--------CCCEEEeccCCC
Confidence            1   1   1112333332   33334443  567899999998853 2111111111100        123468999999


Q ss_pred             cHHHHHHHHHhCCCC
Q 018045          158 KGNDIWNFLRTMDVP  172 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp  172 (361)
                      +.+||.+|.++.|++
T Consensus       330 ~K~eI~~~a~~~Gl~  344 (413)
T 2c5s_A          330 DKLEIIKIAEEIGTY  344 (413)
T ss_dssp             CHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHcCCC
Confidence            999999999999984

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.98  E-value=2e-10  Score=88.90  Aligned_cols=81  Identities=15%  Similarity=0.279  Sum_probs=54.7

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----hHHHHHcCCCCCCCeEEEEeCCCCCeeecC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKLQLGSFPTILFFPKHSSKPIKYP  344 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~  344 (361)
                      ++.+++ ||++||++|+.+.|.|+++..     .+.++.||.+.+.    ..++ ++|++.++||+  |.+|+. ...+.
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~-----~~~~v~v~~~~~~~~~~~~l~-~~~~v~~~Pt~--~~~g~~-v~~~~   88 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA-----SYKVVELDELSDGSQLQSALA-HWTGRGTVPNV--FIGGKQ-IGGCD   88 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTC-----CCEEEEGGGSTTHHHHHHHHH-HHHSCCSSCEE--EETTEE-EECHH
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCC-----CeEEEEccCCCChHHHHHHHH-HHhCCCCcCEE--EECCEE-ECChH
Confidence            456666 999999999999999988742     3455555554431    3588 89999999999  456762 22222


Q ss_pred             CCCC---CHHHHHHHHHHh
Q 018045          345 SERR---DVDSLMAFVDAL  360 (361)
Q Consensus       345 ~~~~---~~~~l~~~i~~~  360 (361)
                      + ..   +.+.|.++|+++
T Consensus        89 ~-~~~~~~~~~l~~~l~~~  106 (116)
T 2e7p_A           89 T-VVEKHQRNELLPLLQDA  106 (116)
T ss_dssp             H-HHHHHHTTCHHHHHHHT
T ss_pred             H-HHHHHhCChHHHHHHHc
Confidence            2 22   455777777753

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.98  E-value=2e-09  Score=92.53  Aligned_cols=44  Identities=20%  Similarity=0.117  Sum_probs=40.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .++++||+|||+||++|+...|.|+++++++++.++.++.|+++
T Consensus        46 ~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d   89 (208)
T 2f8a_A           46 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCN   89 (208)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECC
Confidence            57899999999999999999999999999998756999999986

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.91  E-value=3.7e-09  Score=88.50  Aligned_cols=45  Identities=22%  Similarity=0.172  Sum_probs=41.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG  312 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~  312 (361)
                      .++++||+||++||++|+...|.++++.+.+++.++.++.|+++.
T Consensus        37 ~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~   81 (180)
T 3kij_A           37 KGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQ   81 (180)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCC
T ss_pred             CCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCc
Confidence            578999999999999999999999999999987679999998764

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.91  E-value=3.5e-09  Score=89.12  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=66.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------Cc---hHHHHHcCC--------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------DQ---KEYAKQKLQ--------------  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~~---~~l~~~~~~--------------  323 (361)
                      .++++||+||++||++|+...|.++++.+++++.++.++.|+++.       ..   .+++ ++++              
T Consensus        48 ~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~d~~~~  126 (185)
T 2gs3_A           48 RGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGD  126 (185)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHH-HHTTCCSEEBCCCBSSST
T ss_pred             CCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCCHHHHHHHH-HHcCCCCeeeeeeccCCh
Confidence            578999999999999999999999999999987569999998863       10   2232 2222              


Q ss_pred             ----------------------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 ----------------------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 ----------------------v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                            +..+|+++++...+.....+.| ..+.++|.+.|+++
T Consensus       127 ~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g-~~~~~~l~~~i~~l  184 (185)
T 2gs3_A          127 DAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGP-MEEPLVIEKDLPHY  184 (185)
T ss_dssp             TBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECT-TSCGGGGGGGHHHH
T ss_pred             hhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCC-CCCHHHHHHHHHHh
Confidence                                  2235888888543333444555 67888898888876

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1

Probab=98.90  E-value=1.4e-09  Score=106.23  Aligned_cols=165  Identities=13%  Similarity=0.129  Sum_probs=98.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHH-HHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDE-VEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~-~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      +++++++|||+||+++ +|+.+. +.++.++|+|+|.......+.+.+ +++.+|++++++..... +...  ..+.. -
T Consensus       228 ~~vvvalSGGvDSsv~a~ll~~a~G~~v~av~v~~g~~~~~e~~~~~~~la~~lgi~~~~v~~~~~-f~~~--l~~~~-~  303 (525)
T 1gpm_A          228 DKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPAEDR-FLSA--LAGEN-D  303 (525)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEECHHH-HHHH--HTTCC-C
T ss_pred             cceEEEecCCCCHHHHHHHHHHHhCCCEEEEEEeCCCCCchHHHHHHHHHHHHhCCcEEEEeccHH-HHHh--hcCCC-C
Confidence            6899999999999877 777775 788999999999765445555644 78899999988855432 1111  12221 1


Q ss_pred             CccchhchhhccccHHHHHHHc---cCCEEEEeeeccCCccC-c----cCCCceecCCCCcCCcCCCCCeEEEeeCccCc
Q 018045           87 YEDGHQECCRVRKVRPLRRALK---GLRAWITGQRKDQSPGT-R----SEIPVVQVDPVFEGLEGGVGSLVKWNPVANVK  158 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~---~~~~~i~G~R~~Es~~~-R----~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~  158 (361)
                      +......|+ ......+.+..+   +.+.+++|+..+|-... +    ..-.+..... ..+.. .......+.||.+++
T Consensus       304 pe~~~~~~~-~~~~~~l~~~A~~~~g~~~l~~Gt~~~D~~E~~~~~~~~s~~iks~~~-l~gl~-~~~~~~~i~PL~~l~  380 (525)
T 1gpm_A          304 PEAKRKIIG-RVFVEVFDEEALKLEDVKWLAQGTIYPDVIESAASATGKAHVIKSHHN-VGGLP-KEMKMGLVEPLKELF  380 (525)
T ss_dssp             HHHHHHHHH-HHHHHHHHHHHHHSSSEEEEECCCCHHHHHHTTC------------------------CCEEECTTTTCC
T ss_pred             hHHhhhhhh-HHHHHHHHHHHHhcCCCCEEEeCCCCcchhhhcCcccccccccccccc-ccccc-cccCCcEEehhhcCC
Confidence            111112233 233455666555   44688999965432101 1    0000000000 00000 001234689999999


Q ss_pred             HHHHHHHHHhCCCCCCccccCCC
Q 018045          159 GNDIWNFLRTMDVPINSLHSQGY  181 (361)
Q Consensus       159 ~~dv~~yi~~~~lp~~~lY~~g~  181 (361)
                      .+||++|.++.|+|+.-++++-|
T Consensus       381 K~EVr~la~~lglp~~i~~~~P~  403 (525)
T 1gpm_A          381 KDEVRKIGLELGLPYDMLYRHPF  403 (525)
T ss_dssp             HHHHHHHHHHTTCCHHHHTSCCC
T ss_pred             HHHHHHHHHHcCCCHHhcccCCC
Confidence            99999999999999766666544

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.90  E-value=2.3e-08  Score=87.06  Aligned_cols=106  Identities=11%  Similarity=0.132  Sum_probs=86.8

Q ss_pred             CCceecCcccHHHHHhhcCCCC-cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC--CchHHHHHcCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG--DQKEYAKQKLQLG  325 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~-~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~--~~~~l~~~~~~v~  325 (361)
                      +.|.++|.+|+.++..   .+. .+++.|+.+||+.|..+.+.|+++|+.+++ .+.|+.+|++.  + ..++ +.|++.
T Consensus       113 plv~e~t~~n~~~~~~---~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~-~i~F~~vd~~~~~~-~~~l-~~fgl~  186 (227)
T 4f9z_D          113 HMVTEYNPVTVIGLFN---SVIQIHLLLIMNKASPEYEENMHRYQKAAKLFQG-KILFILVDSGMKEN-GKVI-SFFKLK  186 (227)
T ss_dssp             CSEEECCHHHHHHHHH---SSCCEEEEEEECTTSTTHHHHHHHHHHHHHHTTT-TCEEEEEETTSGGG-HHHH-HHTTCC
T ss_pred             CceeecCcccHHHHhc---cCCceEEEEEEcCCcchHHHHHHHHHHHHHHhhC-CEEEEEeCCccHhH-HHHH-HHcCCC
Confidence            4589999999998876   544 455667789999999999999999999998 79999999974  5 6788 899998


Q ss_pred             --CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 --SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 --~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                        .+|+++++.........+..+..+.+.|.+|++++
T Consensus       187 ~~~~P~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~  223 (227)
T 4f9z_D          187 ESQLPALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGF  223 (227)
T ss_dssp             GGGCSEEEEEESSSCCEEEETTCCCCHHHHHHHHHHH
T ss_pred             cccCCEEEEEECCCCccccCCcCCCCHHHHHHHHHHH
Confidence              89999999855433344443478999999999875

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*

Probab=98.89  E-value=1.2e-09  Score=103.27  Aligned_cols=160  Identities=16%  Similarity=0.202  Sum_probs=98.7

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHH---HHHhcCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQA---LVRSKGLF   84 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~---~~~~~~~~   84 (361)
                      ++|+|+||||.||+++ +++.+.+.++.++++|.|..-.+-.++++++++++|+ ++.++.-......+   .+..... 
T Consensus        11 ~KVvVA~SGGlDSSvll~~L~e~G~eViavtvd~Gq~~~~ele~a~~~A~~lGi~~~~vvD~~eef~~~v~p~i~~na~-   89 (455)
T 1k92_A           11 QRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAF-   89 (455)
T ss_dssp             SEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHTCC-
T ss_pred             CeEEEEEcChHHHHHHHHHHHHcCCEEEEEEEEcCCCCHHHHHHHHHHHHHhCCCeEEEEeChHHHHHHhHHHHHcCCc-
Confidence            6899999999999877 8888888889999999996433457899999999999 78777543221111   1111111 


Q ss_pred             CCCc-cchhchhhcccc--------HHHHHHHc--cCCEEEEeeec--cCCccCccCCCceecCCCCcCCcCCCCCeEEE
Q 018045           85 SFYE-DGHQECCRVRKV--------RPLRRALK--GLRAWITGQRK--DQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW  151 (361)
Q Consensus        85 ~~~~-~~~~~cc~~~K~--------~pl~~~~~--~~~~~i~G~R~--~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  151 (361)
                        +. ...  -|+.++.        .-+.++.+  +.+.+++|+..  ++.  .|.........          +++-.+
T Consensus        90 --y~~eg~--rcY~l~t~~aRp~i~~~l~e~A~e~Gad~IAtGht~kgnDq--~rf~~~~~al~----------p~l~vi  153 (455)
T 1k92_A           90 --HNTTGG--LTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDI--ERFYRYGLLTN----------AELQIY  153 (455)
T ss_dssp             --CCEETT--EECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHH--HHHHHHHHHHC----------TTCEEE
T ss_pred             --ccccCc--eecccCCcchHHHHHHHHHHHHHHcCCCEEEECCcCCCCCH--HHHHHHHHhcC----------CCCEEE
Confidence              10 000  0111111        12233333  67899999963  221  23211111111          235568


Q ss_pred             eeCcc-------CcHHHHHHHHHhCCCCCCccccCCCCCCCC
Q 018045          152 NPVAN-------VKGNDIWNFLRTMDVPINSLHSQGYISIGC  186 (361)
Q Consensus       152 ~Pi~~-------W~~~dv~~yi~~~~lp~~~lY~~g~~~~GC  186 (361)
                      .|+.+       ++.+||.+|.+++|||+..--++-|++--|
T Consensus       154 aPlr~~~ll~~~lsK~EI~~yA~~~GIp~~~t~~~pyS~d~n  195 (455)
T 1k92_A          154 KPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSN  195 (455)
T ss_dssp             CGGGCHHHHHHSSSHHHHHHHHHHTTCCCCCCCCCSSEEEEE
T ss_pred             CeeccccccccCCCHHHHHHHHHHcCCCcccCCCCCCccCCc
Confidence            99988       699999999999999996434444555333

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=98.88  E-value=4.1e-09  Score=90.01  Aligned_cols=92  Identities=13%  Similarity=0.216  Sum_probs=71.8

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++++||+|| ++||++|+.+.|.+.++++++++.++.|+.|++|..                           +..++ 
T Consensus        35 ~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D~~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~-  113 (202)
T 1uul_A           35 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM-  113 (202)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH-
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCCceeEEECCchHHH-
Confidence            4689999999 999999999999999999999765799999998741                           14677 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      .+|++++++..+.....+.|   ...+.++|.+.|+++
T Consensus       114 ~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~l~~l  163 (202)
T 1uul_A          114 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF  163 (202)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHHHHHh
Confidence            789998      99999999544432222222   135679999888875

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=98.88  E-value=2.9e-09  Score=90.18  Aligned_cols=92  Identities=16%  Similarity=0.226  Sum_probs=71.1

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++++||+|| ++||++|+.+.|.+.++++++++.++.++.|++|..                           +..++ 
T Consensus        30 ~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~-  108 (192)
T 2h01_A           30 GKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA-  108 (192)
T ss_dssp             TTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH-
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhHHhhCCccCCCcCeEECCcHHHH-
Confidence            4689999999 999999999999999999999755799999988741                           14677 


Q ss_pred             HcCCCC-----CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG-----SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~-----~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.     .+|++++++..+.....+.+   ...+.+++.+.|+++
T Consensus       109 ~~~gv~~~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~l~~l  157 (192)
T 2h01_A          109 RSYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  157 (192)
T ss_dssp             HHTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HHhCCcCcCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence            889999     89999999544332323323   124688888888765

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=98.88  E-value=4.6e-09  Score=91.03  Aligned_cols=92  Identities=11%  Similarity=0.186  Sum_probs=71.7

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++++||+|| ++||++|+.+.|.+.++++++++.++.|+.|+++..                           +..++ 
T Consensus        55 ~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~-  133 (220)
T 1zye_A           55 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS-  133 (220)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH-
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHhCCCcCCceEEEECCcHHHH-
Confidence            4689999999 999999999999999999999765799999988641                           14678 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      .+|++++++..+.....+.+   ...+.+++.+.|+++
T Consensus       134 ~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~l~~l  183 (220)
T 1zye_A          134 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAF  183 (220)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            899998      99999999544332222222   135788999888865

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=98.85  E-value=6.4e-09  Score=89.68  Aligned_cols=92  Identities=14%  Similarity=0.195  Sum_probs=71.3

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++++||+|| ++||++|+.+.|.+.++++++++.++.|+.|++|..                           +..++ 
T Consensus        51 ~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~-  129 (213)
T 2i81_A           51 GKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVDSKYTHLAWKKTPLAKGGIGNIKHTLLSDITKSIS-  129 (213)
T ss_dssp             TTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHSSCGGGTCCCSCSSEEEECTTSHHH-
T ss_pred             CCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCccCCCceEEECCchHHH-
Confidence            4689999999 999999999999999999999755799999987641                           14677 


Q ss_pred             HcCCCC-----CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG-----SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~-----~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.     .+|++++++..+.....+.+   ...+.+++.+.|+++
T Consensus       130 ~~ygv~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~l~~l  178 (213)
T 2i81_A          130 KDYNVLFDDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRIIDAI  178 (213)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            889998     89999999644432222222   125688999888865

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=98.85  E-value=2.4e-08  Score=82.26  Aligned_cols=90  Identities=14%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             CCCcEEEEEECCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCC
Q 018045          268 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v  324 (361)
                      .+++++|.||++| |++|+...|.++++++++ . ++.++.|+.|..                      +..+. +.|++
T Consensus        43 ~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-~-~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~v  119 (167)
T 2jsy_A           43 KGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-G-DVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFG-EAFGV  119 (167)
T ss_dssp             TTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-S-SCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHH-HHTTC
T ss_pred             CCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-C-CCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHH-HHhCC
Confidence            4789999999999 999999999999999999 4 699999988741                      14577 78998


Q ss_pred             CC------CCeEEEEeCCCCCeeecCC----CCCCHHHHHHHHHHh
Q 018045          325 GS------FPTILFFPKHSSKPIKYPS----ERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~------~Pt~~~~~~g~~~~~~~~~----~~~~~~~l~~~i~~~  360 (361)
                      ..      .|++++++..+.....+.|    ...+.+++.+.|+++
T Consensus       120 ~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~~~l~~l  165 (167)
T 2jsy_A          120 YIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPIEAAKAL  165 (167)
T ss_dssp             BBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHHHHHHHH
T ss_pred             ccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHHHHHHHh
Confidence            76      4999999544433333332    123568888888775

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=98.82  E-value=1e-08  Score=88.99  Aligned_cols=92  Identities=13%  Similarity=0.231  Sum_probs=70.7

Q ss_pred             CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++++||+||+ +||++|+...|.+.++.++|++.++.|+.|++|..                           +..++ 
T Consensus        68 ~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~-  146 (222)
T 3ztl_A           68 RGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTDSQYSHLAWDNLDRKSGGLGHMKIPLLADRKQEIS-  146 (222)
T ss_dssp             TTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTSCCSCSSCEEECSSSHHH-
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhhccccccceeEEeCCchHHH-
Confidence            57899999996 99999999999999999999875799999998752                           13567 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      .+|++++++..+.....+.+   .....+++.+.|+.+
T Consensus       147 ~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~l~~l  196 (222)
T 3ztl_A          147 KAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRLLDAF  196 (222)
T ss_dssp             HHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            789998      89999999644432333222   124578888888765

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=98.82  E-value=2.3e-08  Score=82.05  Aligned_cols=92  Identities=9%  Similarity=0.081  Sum_probs=69.6

Q ss_pred             CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCCC
Q 018045          268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~~  326 (361)
                      .+++++|+||+ +||++|....|.+.++.+++++.++.++.|.+|..                    +..++ +.|++..
T Consensus        34 ~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~~  112 (163)
T 3gkn_A           34 AGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALC-RAFDVIK  112 (163)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHCCSSCEEECTTCHHH-HHTTCEE
T ss_pred             CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCCceEEECCcHHHH-HHhCCcc
Confidence            46799999998 99999999999999999999876799999988732                    13567 7888877


Q ss_pred             ------------CCeEEEEeCCCCCeeecCCC--CCCHHHHHHHHHHh
Q 018045          327 ------------FPTILFFPKHSSKPIKYPSE--RRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ------------~Pt~~~~~~g~~~~~~~~~~--~~~~~~l~~~i~~~  360 (361)
                                  +|++++++..+.....+.+.  ....+++.+.|+++
T Consensus       113 ~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~~~il~~l~~l  160 (163)
T 3gkn_A          113 EKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH  160 (163)
T ss_dssp             EEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             ccccccccccCcceEEEEECCCCeEEEEEcCCCcccCHHHHHHHHHHH
Confidence                        99999996544333333321  23457777777765

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}

Probab=98.81  E-value=4.1e-09  Score=99.28  Aligned_cols=148  Identities=16%  Similarity=0.213  Sum_probs=92.4

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHH----HHHhcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQA----LVRSKGL   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~~~~----~~~~~~~   83 (361)
                      ++++|++|||+||+++ +++.+.+.++.++++|.|..  +-.++++++++++|++ +.++........+    .+.....
T Consensus         6 ~kVvvalSGGlDSsvll~lL~e~G~eV~av~vd~g~~--~e~e~a~~~A~~lGi~~~~vvd~~~ef~~~~~~~~i~~~a~   83 (413)
T 2nz2_A            6 GSVVLAYSGGLDTSCILVWLKEQGYDVIAYLANIGQK--EDFEEARKKALKLGAKKVFIEDVSREFVEEFIWPAIQSSAL   83 (413)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHTTEEEEEEEEESSCC--CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHHTTCC
T ss_pred             CeEEEEEcChHHHHHHHHHHHHcCCEEEEEEEECCcH--HHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHHhCcc
Confidence            5899999999999776 88888777888999999964  4578999999999997 7666443211111    1111111


Q ss_pred             CCCCccchhchhhcccc-----HHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc-
Q 018045           84 FSFYEDGHQECCRVRKV-----RPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA-  155 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~-----~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~-  155 (361)
                         +  ..+.-|....-     .-+.++++  +.+++++|+........|..+-.....          ++.-.+.|+. 
T Consensus        84 ---~--e~~y~~g~~~aRp~i~~~l~~~A~~~Ga~~IatGh~~~~nDq~rf~lg~~~l~----------p~l~ii~Pl~d  148 (413)
T 2nz2_A           84 ---Y--EDRYLLGTSLARPCIARKQVEIAQREGAKYVSHGATGKGNDQVRFELSCYSLA----------PQIKVIAPWRM  148 (413)
T ss_dssp             ---B--TTTBCCTTTTHHHHHHHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHC----------TTCEEECGGGC
T ss_pred             ---c--ccccccccccchHHHHHHHHHHHHHcCCCEEEECCcCcccchHHHHHHHHhcC----------CCCceeccccc
Confidence               0  00111221111     12223333  678999999974221123211000011          2345689999 


Q ss_pred             -----cC-cHHHHHHHHHhCCCCCC
Q 018045          156 -----NV-KGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       156 -----~W-~~~dv~~yi~~~~lp~~  174 (361)
                           +| +.+||.+|.+++|||+.
T Consensus       149 ~~~ll~~~sK~EI~~yA~~~Gip~~  173 (413)
T 2nz2_A          149 PEFYNRFKGRNDLMEYAKQHGIPIP  173 (413)
T ss_dssp             HHHHTTCC-CHHHHHHHHHTTCCCC
T ss_pred             hhhhccCCCHHHHHHHHHHcCCCee
Confidence                 89 99999999999999985

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.77  E-value=2.4e-08  Score=82.69  Aligned_cols=92  Identities=17%  Similarity=0.313  Sum_probs=66.5

Q ss_pred             CCCcEEEEEECCCCh-hHHhhHHHHHHHHHHhcCC--CeEEEEEEcCCC--c-------------------------hHH
Q 018045          268 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLAGN--GVKVGKFRADGD--Q-------------------------KEY  317 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~-~C~~~~p~~~~la~~~~~~--~v~~~~vd~~~~--~-------------------------~~l  317 (361)
                      .++++||+||++||+ +|+...|.+.++.+.++..  ++.|+.|+++..  +                         ..+
T Consensus        32 ~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~~~~  111 (174)
T 1xzo_A           32 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSE  111 (174)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSCHHH
T ss_pred             CCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCCHHH
Confidence            578999999999999 9999999999999999763  399999998721  0                         111


Q ss_pred             HHHc----------------CCCCCCCeEEEEeCCCCCeeecCCCC-CCHHHHHHHHHHh
Q 018045          318 AKQK----------------LQLGSFPTILFFPKHSSKPIKYPSER-RDVDSLMAFVDAL  360 (361)
Q Consensus       318 ~~~~----------------~~v~~~Pt~~~~~~g~~~~~~~~~~~-~~~~~l~~~i~~~  360 (361)
                      . +.                +++..+|+++++...+.....+.|.. .+.++|.+.|+++
T Consensus       112 ~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l  170 (174)
T 1xzo_A          112 I-EEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSA  170 (174)
T ss_dssp             H-HHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCHHHHHHHHHHH
T ss_pred             H-HHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence            1 11                34667898888854443344444522 2589999999876

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.76  E-value=1.1e-07  Score=81.97  Aligned_cols=43  Identities=21%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .+|++||+|||+||++|+ ..|.|+++.++|++.++.++.|.++
T Consensus        55 ~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d   97 (215)
T 2i3y_A           55 VGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCN   97 (215)
T ss_dssp             TTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEcc
Confidence            578999999999999999 8999999999998767999999875

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.76  E-value=2.6e-08  Score=82.79  Aligned_cols=82  Identities=18%  Similarity=0.233  Sum_probs=64.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD------------------------------------  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~------------------------------------  311 (361)
                      ..+++|+.|+.+|||+|+.+.|.++++.+.+.+  +.+...+..                                    
T Consensus        21 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~~p~~~~~s~~aa~~~~~a~~~~~~~~~~~~lf~~~~~~   98 (175)
T 3gyk_A           21 EGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN--VRLVYREWPILGEGSDFAARAALAARQQGKYEAFHWALMGMSGKA   98 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEECCCSCHHHHHHHHHHHHGGGGTCHHHHHHHHHTCSSCC
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC--EEEEEEeCCCCCCChHHHHHHHHHHHHHhHHHHHHHHHHhcCCCC
Confidence            467899999999999999999999999988754  666666531                                    


Q ss_pred             ---------------------------------CCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          312 ---------------------------------GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       312 ---------------------------------~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                                                       .+ ..++ ++++|.++||+++  +|+    .+.| ..+.+.|.+.|+
T Consensus        99 ~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~-~~~a-~~~gv~gtPt~~i--~g~----~~~G-~~~~~~l~~~i~  169 (175)
T 3gyk_A           99 NETGVLRIAREVGLDTEQLQRDMEAPEVTAHIAQS-MALA-QKLGFNGTPSFVV--EDA----LVPG-FVEQSQLQDAVD  169 (175)
T ss_dssp             SHHHHHHHHHHTTCCHHHHHHHTTCHHHHHHHHHH-HHHH-HHHTCCSSSEEEE--TTE----EECS-CCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHH-HHHH-HHcCCccCCEEEE--CCE----EeeC-CCCHHHHHHHHH
Confidence                                             22 4466 7899999999987  553    3345 688999999998


Q ss_pred             Hh
Q 018045          359 AL  360 (361)
Q Consensus       359 ~~  360 (361)
                      ++
T Consensus       170 ~~  171 (175)
T 3gyk_A          170 RA  171 (175)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.73  E-value=4.8e-08  Score=83.21  Aligned_cols=45  Identities=9%  Similarity=-0.031  Sum_probs=39.0

Q ss_pred             CCCcEEEEEECCCChh-HHhhHHHHHHHHHHhcC---CCeEEEEEEcCC
Q 018045          268 RQEPWLVVLYAPWCQF-CQAMEGSYVELADKLAG---NGVKVGKFRADG  312 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~-C~~~~p~~~~la~~~~~---~~v~~~~vd~~~  312 (361)
                      .++++||+||++||++ |+.+.|.+.++.+.+..   .++.++.|++|.
T Consensus        40 ~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~   88 (200)
T 2b7k_A           40 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   88 (200)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             CCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC
Confidence            5789999999999997 99999999998887752   268999998873

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.72  E-value=1.8e-08  Score=87.08  Aligned_cols=81  Identities=12%  Similarity=0.299  Sum_probs=60.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-------------------------------------  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-------------------------------------  310 (361)
                      ..+.+++.||++||++|+.+.|.++++.+.    ++.+..+..                                     
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~  160 (216)
T 1eej_A           85 QEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  160 (216)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCCh
Confidence            467899999999999999999999998752    355554432                                     


Q ss_pred             -------CCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          311 -------DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       311 -------~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                             +.+ ..++ ++++|.++||+ ++.+|.  .  +.| ..+.++|.++|+++
T Consensus       161 ~~~~~~v~~~-~~l~-~~~gV~gtPt~-v~~dG~--~--~~G-~~~~~~l~~~l~~~  209 (216)
T 1eej_A          161 ASCDVDIADH-YALG-VQLGVSGTPAV-VLSNGT--L--VPG-YQPPKEMKEFLDEH  209 (216)
T ss_dssp             CCCSCCHHHH-HHHH-HHHTCCSSSEE-ECTTSC--E--EES-CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHH-HHHH-HHcCCCccCEE-EEcCCe--E--ecC-CCCHHHHHHHHHHh
Confidence                   122 5677 88999999998 555664  2  234 67889999998764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=98.71  E-value=2.4e-08  Score=83.19  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=54.4

Q ss_pred             CCCcEEEEEECCC-ChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------chHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPW-CQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~w-C~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~~~l~~~~~~v~  325 (361)
                      .++++||+||++| |++|+...|.+.++.++  . ++.|+.|+.|..                     +..++ +.|++.
T Consensus        43 ~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~--~-~v~vv~Is~D~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~  118 (175)
T 1xvq_A           43 RGKSVLLNIFPSVDTPVCATSVRTFDERAAA--S-GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFG-EDYGVT  118 (175)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHH--T-TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHH-HHTTCB
T ss_pred             CCCEEEEEEEeCCCCchHHHHHHHHHHHHhh--c-CCEEEEEECCCHHHHHHHHHHcCCCCceEeeCCHHHHH-HHhCCc
Confidence            4789999999999 99999999999999988  3 699999988721                     14577 789998


Q ss_pred             CC---------CeEEEEe-CCC
Q 018045          326 SF---------PTILFFP-KHS  337 (361)
Q Consensus       326 ~~---------Pt~~~~~-~g~  337 (361)
                      ..         |++++++ +|+
T Consensus       119 ~~~~~~~g~~~p~~~lid~~G~  140 (175)
T 1xvq_A          119 IADGPMAGLLARAIVVIGADGN  140 (175)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSB
T ss_pred             ccccccCCcccceEEEECCCCe
Confidence            77         8888885 454

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.70  E-value=3.6e-08  Score=84.81  Aligned_cols=82  Identities=13%  Similarity=0.225  Sum_probs=62.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD------------------------------------  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~------------------------------------  311 (361)
                      ..+.+++.|+++||++|+.+.|.++++.+.    ++.+..+...                                    
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~----~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~  160 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKE  160 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSS
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC----CcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCCh
Confidence            467899999999999999999999997652    3555433221                                    


Q ss_pred             --------CCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          312 --------GDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       312 --------~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                              .+ ..++ ++++|+++||+++ .+|+    .+.| ..+.++|.++|++.+
T Consensus       161 ~~~~~~v~~~-~~l~-~~~gV~gTPt~vi-~nG~----~~~G-~~~~~~l~~~l~~~~  210 (211)
T 1t3b_A          161 VKTPNIVKKH-YELG-IQFGVRGTPSIVT-STGE----LIGG-YLKPADLLRALEETA  210 (211)
T ss_dssp             CCCSSHHHHH-HHHH-HHHTCCSSCEEEC-TTSC----CCCS-CCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHH-HHHH-HHcCCCcCCEEEE-eCCE----EecC-CCCHHHHHHHHHhcc
Confidence                    22 5677 7899999999988 6675    2344 678999999998753

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=98.65  E-value=7.7e-08  Score=78.62  Aligned_cols=66  Identities=14%  Similarity=0.148  Sum_probs=53.1

Q ss_pred             CCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCCCC
Q 018045          269 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGSF  327 (361)
Q Consensus       269 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~~~  327 (361)
                      +++++|+|| ++||++|....|.|.++.+++++.+ .++.|.+|..                    +..++ +.|++...
T Consensus        35 ~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~~  112 (159)
T 2a4v_A           35 NRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFI-GLLGAKKT  112 (159)
T ss_dssp             CSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHH-HHHTCBSS
T ss_pred             CCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCCCHHHHHHHHHHhCCCceEEECCccHHH-HHhCCccc
Confidence            347889987 9999999999999999999998756 8888877532                    14577 78999999


Q ss_pred             C-------eEEEEeCCC
Q 018045          328 P-------TILFFPKHS  337 (361)
Q Consensus       328 P-------t~~~~~~g~  337 (361)
                      |       ++++ ++|+
T Consensus       113 p~~g~~~~~~li-~~G~  128 (159)
T 2a4v_A          113 PLSGSIRSHFIF-VDGK  128 (159)
T ss_dssp             SSSCBCCEEEEE-ETTE
T ss_pred             ccCCccceEEEE-cCCE
Confidence            8       5555 7776

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=98.65  E-value=2.6e-07  Score=72.20  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=79.4

Q ss_pred             Cceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      .+..| +.+++++++.   .++.++|-|+++||++|   .+.|.++|+.+ + ++.|+.++   + .+++ ++|++. .|
T Consensus        22 ~~~~i~s~~e~e~fi~---~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~-d~~F~~t~---~-~~v~-~~~~v~-~~   87 (124)
T 2l4c_A           22 EPTWLTDVPAAMEFIA---ATEVAVIGFFQDLEIPA---VPILHSMVQKF-P-GVSFGIST---D-SEVL-THYNIT-GN   87 (124)
T ss_dssp             CCEECCSHHHHHHHHH---TSSEEEEEECSCTTSTH---HHHHHHHHHHC-T-TSEEEEEC---C-HHHH-HHTTCC-SS
T ss_pred             cceEcCCHHHHHHHHh---cCCCEEEEEECCCCChh---HHHHHHHHHhC-C-CceEEEEC---h-HHHH-HHcCCC-CC
Confidence            34556 4567888886   78899999999999998   67999999999 5 69998764   3 6788 899998 89


Q ss_pred             eEEEEeCCCCCeeecCC---CCCCHHHHHHHHHH
Q 018045          329 TILFFPKHSSKPIKYPS---ERRDVDSLMAFVDA  359 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~  359 (361)
                      ++++|++.......|.|   +..+.++|.+||+.
T Consensus        88 ~vvlfkkfde~~~~~~g~~~~~~~~~~L~~FI~~  121 (124)
T 2l4c_A           88 TICLFRLVDNEQLNLEDEDIESIDATKLSRFIEI  121 (124)
T ss_dssp             CEEEEETTTTEEEEECHHHHTTCCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCceeecCcccCCCCHHHHHHHHHH
Confidence            99999987655777875   46899999999985

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=98.64  E-value=3.6e-08  Score=70.83  Aligned_cols=71  Identities=14%  Similarity=0.193  Sum_probs=53.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH--HcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILFFPKHSSKPIKYPSERRDV  350 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~  350 (361)
                      ++.|+++||++|+.+.+.+++.       ++.|..+|++.+ +++..  .++++.++|+++  .+|+  .+  .|  .+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-------~i~~~~vdi~~~-~~~~~~~~~~g~~~vP~~~--~~g~--~~--~g--~~~   66 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-------GFDFEMINVDRV-PEAAEALRAQGFRQLPVVI--AGDL--SW--SG--FRP   66 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTC-HHHHHHHHHTTCCSSCEEE--ETTE--EE--ES--CCH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-------CCCeEEEECCCC-HHHHHHHHHhCCCccCEEE--ECCE--EE--ec--CCH
Confidence            6789999999999999998863       477888999987 55541  258999999983  4564  22  22  567


Q ss_pred             HHHHHHHHH
Q 018045          351 DSLMAFVDA  359 (361)
Q Consensus       351 ~~l~~~i~~  359 (361)
                      ++|.++|++
T Consensus        67 ~~l~~~l~~   75 (81)
T 1h75_A           67 DMINRLHPA   75 (81)
T ss_dssp             HHHGGGSCC
T ss_pred             HHHHHHHhc
Confidence            888877754

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=98.64  E-value=6.9e-08  Score=68.05  Aligned_cols=69  Identities=13%  Similarity=0.199  Sum_probs=54.2

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHH---cCCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQ---KLQLGSFPTILFFPKHSSKPIKYPSERRD  349 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~---~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~  349 (361)
                      ++.|+++||++|+.+.+.++++       ++.|..+|++.+ +++. +   ++++.++|++++  +|+  .  ..|  .+
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~di~~~-~~~~-~~~~~~~~~~vP~l~~--~g~--~--~~g--~~   65 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------GLAYNTVDISLD-DEAR-DYVMALGYVQAPVVEV--DGE--H--WSG--FR   65 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTC-HHHH-HHHHHTTCBCCCEEEE--TTE--E--EES--CC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCCcEEEECCCC-HHHH-HHHHHcCCCccCEEEE--CCe--E--EcC--CC
Confidence            6789999999999999998864       377888999987 6655 4   799999999874  554  2  223  57


Q ss_pred             HHHHHHHHH
Q 018045          350 VDSLMAFVD  358 (361)
Q Consensus       350 ~~~l~~~i~  358 (361)
                      .++|.++|+
T Consensus        66 ~~~l~~~l~   74 (75)
T 1r7h_A           66 PERIKQLQA   74 (75)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHh
Confidence            888888874

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1

Probab=98.64  E-value=7.2e-08  Score=90.24  Aligned_cols=151  Identities=13%  Similarity=0.199  Sum_probs=91.3

Q ss_pred             hCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCChHHHHH----HHHhc
Q 018045            8 FGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDAVEVQA----LVRSK   81 (361)
Q Consensus         8 ~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~~~~~~----~~~~~   81 (361)
                      ..++++|+||||-||+++ .++.+.+.++..+++|.|..  +-++.++++++++|+ ++.++.-......+    .+...
T Consensus        13 ~~~KVVVA~SGGlDSSv~a~~Lke~G~eViavt~d~Gq~--~Ele~A~~vA~~lGi~~~~VvDl~eef~~~v~~p~i~~n   90 (421)
T 1vl2_A           13 MKEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQK--DDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGN   90 (421)
T ss_dssp             -CCEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEESSCC--CCHHHHHHHHHHHTCSEEEEEECHHHHHHHTHHHHHTTT
T ss_pred             ccCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEEEcCCH--HHHHHHHHHHHHcCCceEEEEecHHHHHHhhhhHHHhcC
Confidence            347899999999999766 78878888999999999963  446789999999999 78777543222111    11111


Q ss_pred             CCC-C-CCc--cchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCc
Q 018045           82 GLF-S-FYE--DGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVA  155 (361)
Q Consensus        82 ~~~-~-~~~--~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~  155 (361)
                      ... . .+.  ...+.|.    ..-+..+.+  +.+.+++|.........|....+...+          +..--+.|+.
T Consensus        91 a~yeg~Y~~g~~l~Rp~i----~~~l~~~A~~~Gad~IA~G~~~kgnDq~rf~~~~~al~----------p~~~IiaPl~  156 (421)
T 1vl2_A           91 AMYEGRYLLGTAIARPLI----AKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYAALN----------PNLKVISPWK  156 (421)
T ss_dssp             CCBTTTBCCHHHHHHHHH----HHHHHHHHHHHTCSEEECCCCTTSSHHHHHHHHHHHHC----------TTSEEECGGG
T ss_pred             CcccCceeCCCcccHHHH----HHHHHHHHHHcCCCEEEECCeeCCCChHHHHHHHHhcC----------CCCeEEcccC
Confidence            000 0 000  0022232    122333333  788999999863211122211111111          1234678999


Q ss_pred             c-------CcHHHHHHHHHhCCCCCC
Q 018045          156 N-------VKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       156 ~-------W~~~dv~~yi~~~~lp~~  174 (361)
                      +       ++.+||.+|.+++|||+.
T Consensus       157 d~~~l~~~lsK~Eir~~A~e~Glp~~  182 (421)
T 1vl2_A          157 DPEFLAKFKGRTDLINYAMEKGIPIK  182 (421)
T ss_dssp             CHHHHHHTC--CHHHHHHHHHTCCCC
T ss_pred             chhhccccCCHHHHHHHHHHcCCCcc
Confidence            9       599999999999999985

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.62  E-value=1.4e-07  Score=79.85  Aligned_cols=43  Identities=16%  Similarity=0.213  Sum_probs=39.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .++++|+.|+++||++|+.+.|.++++.+.+.+ ++.|..++++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            578899999999999999999999999999987 7999998875

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=98.62  E-value=8.2e-08  Score=83.13  Aligned_cols=92  Identities=11%  Similarity=0.197  Sum_probs=68.8

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~  319 (361)
                      .++++||+|| ++||++|+...|.|.++.+++++.++.++.|++|..+                           ..++ 
T Consensus        55 ~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~-  133 (221)
T 2c0d_A           55 GQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVDSVYSHLAWKNMPIEKGGIGNVEFTLVSDINKDIS-  133 (221)
T ss_dssp             TTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSEEEECTTSHHH-
T ss_pred             CCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhhhhcCccCCceEEEECCchHHH-
Confidence            4689999999 9999999999999999999997557999998876420                           2455 


Q ss_pred             HcCCC-----CCCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQL-----GSFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v-----~~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++     ..+|++++++..+.....+.+   ...+.+++.+.|+++
T Consensus       134 ~~ygv~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~L  182 (221)
T 2c0d_A          134 KNYNVLYDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRTIDSI  182 (221)
T ss_dssp             HHTTCEETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHcCCcccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            66777     368999999654432222222   135788999888865

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=98.61  E-value=1e-07  Score=79.71  Aligned_cols=92  Identities=5%  Similarity=-0.025  Sum_probs=67.5

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~~  326 (361)
                      .+++++|+|| ++||++|....|.|.++.+++++.++.++.|.+|..+                    ..++ +.|++..
T Consensus        50 ~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D~~~~~~~~~~~~~~~f~~l~D~~~~~~-~~~gv~~  128 (179)
T 3ixr_A           50 TNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRDSVKSHDSFCAKQGFTFPLVSDSDAILC-KAFDVIK  128 (179)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTCHHH-HHTTCEE
T ss_pred             CCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCceEEEECCchHHH-HHcCCcc
Confidence            4678999998 9999999999999999999998767999999886431                    3566 6788753


Q ss_pred             ------------CCeEEEEeCCCCCeeecCC--CCCCHHHHHHHHHHh
Q 018045          327 ------------FPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ------------~Pt~~~~~~g~~~~~~~~~--~~~~~~~l~~~i~~~  360 (361)
                                  .|++++++..+.....+.+  ...+.+++.+.|+++
T Consensus       129 ~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~il~~l~~l  176 (179)
T 3ixr_A          129 EKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPGHAEEVLNKLKAH  176 (179)
T ss_dssp             EECCC--CEEEECCEEEEECTTSBEEEEECSCCSTTHHHHHHHHHHHH
T ss_pred             cccccCcccCCcceEEEEECCCCEEEEEEcCCCCCCCHHHHHHHHHHH
Confidence                        6889999644432323322  124567777777765

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}

Probab=98.61  E-value=4.2e-08  Score=96.18  Aligned_cols=166  Identities=14%  Similarity=0.178  Sum_probs=98.4

Q ss_pred             CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCC-cHHHHHHHHHHHHHh-CCcEEEEcCChHHHHHHHHhcCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHF-GIRIEYMFPDAVEVQALVRSKGLFS   85 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~-g~~i~~~~p~~~~~~~~~~~~~~~~   85 (361)
                      ++++|++|||.||+++ +|+.+ .+.++.++|+|+|.. ..|..+.++.+++++ |++++++........   ...+.. 
T Consensus       256 ~~vvvalSGGvDSsv~a~ll~~~~G~~v~~v~vd~g~~~~~e~~~~~~~~~~~l~gi~~~~vd~~~~f~~---~l~g~~-  331 (556)
T 3uow_A          256 HYVIAAMSGGIDSTVAAAYTHKIFKERFFGIFIDNGLLRKNEAENVYTFLKSTFPDMNITKIDASENFLS---NLQGVT-  331 (556)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHHHHCTTSEEEEEECHHHHHH---HTTTCC-
T ss_pred             ceEEEEcccCCCHHHHHHHHHHHhCCeEEEEEEecCCCChHHHHHHHHHHHHhcCCCCeEEeccHHHHHH---hhcCCC-
Confidence            6899999999999877 77766 477899999999964 456666668899999 999998855432111   112221 


Q ss_pred             CCccchhchhhccccHHHHHHHcc---C---CEEEEeeeccCCccCccCC---CceecCCCCcCCcCCCCCeEEEeeCcc
Q 018045           86 FYEDGHQECCRVRKVRPLRRALKG---L---RAWITGQRKDQSPGTRSEI---PVVQVDPVFEGLEGGVGSLVKWNPVAN  156 (361)
Q Consensus        86 ~~~~~~~~cc~~~K~~pl~~~~~~---~---~~~i~G~R~~Es~~~R~~~---~~~~~~~~~~~~~~~~~~~~~~~Pi~~  156 (361)
                      -+...... |....+.-+.+..+.   .   +.+++|+..+|-...+...   ..+.......+.. .......+.||.+
T Consensus       332 ~pe~kr~i-ig~~f~~vf~~~A~~~~~~~~~~~la~Gt~y~D~ies~~~~g~~~~iks~~n~~gl~-~~~~~~li~PL~~  409 (556)
T 3uow_A          332 DPEQKRKI-IGKLFIEEFEKAVNNIDIDINKTFLLQGTLYPDIIESKCSKNLSDTIKTHHNVGGLP-KNLKFKLFEPFKY  409 (556)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHTTCCCGGGEEEECCCCHHHHHHHSCC--------------------CCCEEECTTTT
T ss_pred             ChHHHHHH-HHHHHHHHHHHHHHHcCCcccccccccCccChHHHhhcccccccceecccccccccc-cccccceEeeccc
Confidence            11111122 222233444554442   2   5788898665532111110   0000000000000 0012446899999


Q ss_pred             CcHHHHHHHHHhCCCCCCccccCCC
Q 018045          157 VKGNDIWNFLRTMDVPINSLHSQGY  181 (361)
Q Consensus       157 W~~~dv~~yi~~~~lp~~~lY~~g~  181 (361)
                      ++++||.++.++.|||+.-.+++-|
T Consensus       410 l~K~EVr~la~~lGlp~~~~~r~P~  434 (556)
T 3uow_A          410 LFKDDVKTLSRELNLPEEITNRHPF  434 (556)
T ss_dssp             CCHHHHHHHHHTTTCCHHHHHCCCC
T ss_pred             CcHHHHHHHHHHcCCCHHHhCCCCC
Confidence            9999999999999999766666633

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.58  E-value=8.6e-08  Score=84.29  Aligned_cols=92  Identities=18%  Similarity=0.154  Sum_probs=69.1

Q ss_pred             CCC-cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHH
Q 018045          268 RQE-PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ  320 (361)
Q Consensus       268 ~~~-~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~  320 (361)
                      .++ .+|+.|+++||++|....+.+.+++++|+..++.++.|++|..                          +..++ +
T Consensus        32 ~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~Ds~~~~~~w~~~~~~~~~~~i~fPil~D~~~~ia-~  110 (249)
T 3a2v_A           32 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA-R  110 (249)
T ss_dssp             TTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHTCCCCCSCEEECTTSHHH-H
T ss_pred             CCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHHHHHHHHHHHhcCCCCceeEEECCchHHH-H
Confidence            356 4566889999999999999999999999865799999998652                          13577 7


Q ss_pred             cCCCC-------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          321 KLQLG-------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~-------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      .|++.       .+|++++++..+.......+   ..++.++|...|+++
T Consensus       111 ~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr~I~al  160 (249)
T 3a2v_A          111 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKAL  160 (249)
T ss_dssp             HHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHHHHHHH
Confidence            88887       89999999644432222222   125889999998876

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.56  E-value=3.6e-07  Score=78.19  Aligned_cols=43  Identities=19%  Similarity=0.122  Sum_probs=39.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      .++++||+|||+||++| ...|.|+++.++|++.++.++.|+++
T Consensus        37 kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d   79 (207)
T 2r37_A           37 AGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCN   79 (207)
T ss_dssp             TTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECC
T ss_pred             CCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECc
Confidence            57899999999999999 68899999999998767999999875

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=98.56  E-value=5.1e-08  Score=79.67  Aligned_cols=92  Identities=16%  Similarity=0.275  Sum_probs=62.1

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCC-
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG-  325 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~-  325 (361)
                      .++.++|+|| ++||++|+...|.+.++.++++..++.++.|+.|..+                    .+++ +.|+|. 
T Consensus        29 ~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d~~~~~~~~~~~~~~~~p~l~D~~~~v~-~~ygv~~  107 (157)
T 4g2e_A           29 KGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVDPPFSNKAFKEHNKLNFTILSDYNREVV-KKYNVAW  107 (157)
T ss_dssp             TTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHH-HHTTCEE
T ss_pred             CCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeecccchhHHHHHHHHcCCcEEEEEcCCcHHH-HHcCCcc
Confidence            5789999999 9999999999999999999988767899988876531                    3466 677763 


Q ss_pred             ----------CCCeEEEEeCCCCCeeec----CCCCCCHHHHHHHHHHh
Q 018045          326 ----------SFPTILFFPKHSSKPIKY----PSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ----------~~Pt~~~~~~g~~~~~~~----~~~~~~~~~l~~~i~~~  360 (361)
                                ..|++++++..+.....+    ..+..+.+++.+.|++|
T Consensus       108 ~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L  156 (157)
T 4g2e_A          108 EFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL  156 (157)
T ss_dssp             ECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred             ccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence                      367788885433222221    12345789999999876

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=98.55  E-value=2.1e-07  Score=78.27  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=67.7

Q ss_pred             CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc------------------------hHHHHHcC
Q 018045          268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ------------------------KEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~------------------------~~l~~~~~  322 (361)
                      .++++||+||+ +||++|....|.|.++.+++++.++.++.|.++..+                        ..++ +.|
T Consensus        29 ~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~-~~y  107 (186)
T 1n8j_A           29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHH-HHT
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCcccCCceeEEECCchHHH-HHh
Confidence            46899999995 999999999999999999997657999999876421                        2355 567


Q ss_pred             CCC------CCCeEEEEeCCCCCeeecCCC---CCCHHHHHHHHHHh
Q 018045          323 QLG------SFPTILFFPKHSSKPIKYPSE---RRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~------~~Pt~~~~~~g~~~~~~~~~~---~~~~~~l~~~i~~~  360 (361)
                      ++.      .+|++++++..+.....+.+.   ..+.+++.+.|+++
T Consensus       108 gv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~l~~l  154 (186)
T 1n8j_A          108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA  154 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            775      369999996444333333321   23688899888865

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=98.53  E-value=2.4e-07  Score=79.62  Aligned_cols=92  Identities=11%  Similarity=0.161  Sum_probs=68.9

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~  319 (361)
                      .++++||+|| ++||++|....|.|.++.++++..++.++.|.+|..+                           ..++ 
T Consensus        47 ~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~-  125 (211)
T 2pn8_A           47 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS-  125 (211)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH-
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHhhhccCccCCceEEEECCchHHH-
Confidence            4689999999 9999999999999999999997657999999875420                           2455 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      .+|++++++..+.....+.+   ...+.+++.+.|+++
T Consensus       126 ~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~l~~l  175 (211)
T 2pn8_A          126 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  175 (211)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            667774      58999999654432322222   125788898888765

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.50  E-value=2.3e-07  Score=78.34  Aligned_cols=42  Identities=26%  Similarity=0.343  Sum_probs=37.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~  310 (361)
                      ..+++|+.|+.+||++|+.+.|.+.++.+.+.+ ++.|..+.+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEeh
Confidence            578899999999999999999999999999987 788876655

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.49  E-value=2.4e-07  Score=81.32  Aligned_cols=85  Identities=15%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD------------------------------------  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~------------------------------------  311 (361)
                      ..+.+|+.|+.+|||+|+.+.+.+.++.+.  + +|.|..+...                                    
T Consensus        96 ~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~--g-~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~l~  172 (241)
T 1v58_A           96 DAPVIVYVFADPFCPYCKQFWQQARPWVDS--G-KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLN  172 (241)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHT--T-SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCC
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHhC--C-cEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHHHHhccCCCC
Confidence            356789999999999999999999987764  3 5777665541                                    


Q ss_pred             --------------CCchHHHHHcCCCCCCCeEEEEeC-CCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          312 --------------GDQKEYAKQKLQLGSFPTILFFPK-HSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       312 --------------~~~~~l~~~~~~v~~~Pt~~~~~~-g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                    .+ ..++ ++++|.++||+++.+. |+  .....| ..+.+.|.++|++.
T Consensus       173 ~~~~~~~~~~~~v~~~-~~l~-~~~gv~gtPt~vi~~~~G~--~~~~~G-~~~~~~L~~~l~~~  231 (241)
T 1v58_A          173 VPANVSTEQMKVLSDN-EKLM-DDLGANVTPAIYYMSKENT--LQQAVG-LPDQKTLNIIMGNK  231 (241)
T ss_dssp             CCSSCCHHHHHHHHHH-HHHH-HHHTCCSSCEEEEEETTTE--EEEEES-SCCHHHHHHHTTC-
T ss_pred             ccccCCHHHHHHHHHH-HHHH-HHcCCCCCCEEEEECCCCC--EEEecC-CCCHHHHHHHHHHH
Confidence                          11 3466 7899999999999863 43  334455 68899999988764

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.49  E-value=3.1e-07  Score=79.75  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=80.0

Q ss_pred             CCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..+++| +.+++++++.   .++.++|-|+++|   |..+.+.|.++|+.+ . .+.|+..   .+ .+++ ++|++.+ 
T Consensus         9 ~~~~~l~s~~~~~~~l~---~~~v~vVgff~~~---~~~~~~~f~~~A~~l-~-~~~F~~t---~~-~~v~-~~~~v~~-   74 (227)
T 4f9z_D            9 QEPTWLTDVPAAMEFIA---ATEVAVIGFFQDL---EIPAVPILHSMVQKF-P-GVSFGIS---TD-SEVL-THYNITG-   74 (227)
T ss_dssp             CCCEECCSHHHHHHHHH---TSSEEEEEECSCS---CSTHHHHHHHHTTTC-T-TSEEEEE---CC-HHHH-HHTTCCS-
T ss_pred             CCCeeeCCHHHHHHHHh---cCCeEEEEEecCC---CchhHHHHHHHHHhC-C-CceEEEE---CC-HHHH-HHcCCCC-
Confidence            345666 5588999887   7899999999998   567899999999999 4 6899874   35 7899 8999998 


Q ss_pred             CeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHH
Q 018045          328 PTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDA  359 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~  359 (361)
                      |++++|+++......|.+   |.++.++|.+||+.
T Consensus        75 p~i~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~  109 (227)
T 4f9z_D           75 NTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEI  109 (227)
T ss_dssp             SEEEEEETTTTEEEEECHHHHHTCCHHHHHHHHHH
T ss_pred             CeEEEEEecCcccccccccccCCCCHHHHHHHHHH
Confidence            999999976544677875   36899999999975

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.46  E-value=6.5e-07  Score=74.04  Aligned_cols=92  Identities=11%  Similarity=0.106  Sum_probs=67.5

Q ss_pred             CCCcEEEEEECCCCh-hHHhhHHHHHHHHHHhcC--CCeEEEEEEcCC-C-----------------------------c
Q 018045          268 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLAG--NGVKVGKFRADG-D-----------------------------Q  314 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~-~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~-~-----------------------------~  314 (361)
                      .+++++|+||++||+ .|....|.+.++.+.++.  .++.++.|.+|. .                             .
T Consensus        27 ~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~  106 (170)
T 3me7_A           27 KGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTSEDL  106 (170)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSHHHH
T ss_pred             CCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCHHHH
Confidence            478999999999997 699999999999999963  368888888762 0                             0


Q ss_pred             hHHHHHcCC---------CCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          315 KEYAKQKLQ---------LGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       315 ~~l~~~~~~---------v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ..++ +.|+         +...|++++++..+.....+.|...+.++|.+.|+++
T Consensus       107 ~~~~-~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i~~~l~~~  160 (170)
T 3me7_A          107 FKLL-DAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEFVNALRLA  160 (170)
T ss_dssp             HHHH-HHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHHHHHHHHH
T ss_pred             HHHH-HHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            2345 4544         3456888888544433334455457899999999875

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}

Probab=98.46  E-value=2.4e-07  Score=92.88  Aligned_cols=164  Identities=9%  Similarity=0.107  Sum_probs=95.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      +++++++|||.||+++ +|+.+. + .++.++|+|.|.......+.++++++++|++++++..+.. +    ........
T Consensus       241 ~~vvv~lSGGvDSsVla~Ll~~alG~~~V~aV~vd~g~~~~~e~e~a~~~a~~lGI~~~vvdi~~~-f----~~~~~~l~  315 (697)
T 2vxo_A          241 SKVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVINAAHS-F----YNGTTTLP  315 (697)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHSCGGGEEEEEEECSCCCSSTTHHHHHHHHHTTCCEEEEECHHH-H----HTCCCBCC
T ss_pred             cceEEEccCchHHHHHHHHHHHhcCCceEEEEEeccccCCcchHHHHHHHHHHhCCcEEEecchHH-H----Hhhhhhhc
Confidence            6899999999999877 777775 6 6789999999976555678899999999999988754321 1    11100000


Q ss_pred             -------C----c-cchhchhhccccHH----HHHH----Hc--cCC----EEEEeeeccCCccCccCCCceecCCCCcC
Q 018045           87 -------Y----E-DGHQECCRVRKVRP----LRRA----LK--GLR----AWITGQRKDQSPGTRSEIPVVQVDPVFEG  140 (361)
Q Consensus        87 -------~----~-~~~~~cc~~~K~~p----l~~~----~~--~~~----~~i~G~R~~Es~~~R~~~~~~~~~~~~~~  140 (361)
                             +    . .....|-...|...    +.+.    .+  +.+    .+++|..++|.. ..............+.
T Consensus       316 ~~~~~~~Y~~g~~~~l~~v~~~~~kR~iig~~~~~v~~~~A~~~g~~~~~~~LatG~~~~D~i-Es~~~~l~~g~~~iks  394 (697)
T 2vxo_A          316 ISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNLKPEEVFLAQGTLRPDLI-ESASLVASGKAELIKT  394 (697)
T ss_dssp             ----------CBCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTCCCTTSEEEECCCSSCCSB-CCHHHHHHSCCCGGGS
T ss_pred             ccccccchhcccCcCcccccCHHHHHhHHHHHHHHHHHHHHHHcCCCcccEEEEEeccChhhh-hhhhhhhhcCcccccc
Confidence                   0    0 00111222223321    2111    12  334    788999888652 2111000000000000


Q ss_pred             Cc--CC-----CCCeEEEeeCccCcHHHHHHHHHhCCCCCCccccC
Q 018045          141 LE--GG-----VGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHSQ  179 (361)
Q Consensus       141 ~~--~~-----~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~~  179 (361)
                      .+  .+     ..+...+.||.++++.||.+|.++.|||..-.+.+
T Consensus       395 ~~nv~g~~~~~~~~~~~i~PL~~L~K~EVr~la~~lGlP~~i~~r~  440 (697)
T 2vxo_A          395 HHNDTELIRKLREEGKVIEPLKDFHKDEVRILGRELGLPEELVSRH  440 (697)
T ss_dssp             CCSSCHHHHHHHHTTCEECGGGGSCHHHHHHHHHHTTCCHHHHTCC
T ss_pred             ccccchhhHHhccCCEEEEecccCCHHHHHHHHHHcCCCcceeeCC
Confidence            00  00     00123689999999999999999999998544444

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=98.45  E-value=8.2e-08  Score=79.09  Aligned_cols=92  Identities=12%  Similarity=0.236  Sum_probs=67.6

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--------------------hHHHHHcCCCC-
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--------------------KEYAKQKLQLG-  325 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--------------------~~l~~~~~~v~-  325 (361)
                      ++++++|.|| ++||++|....|.+.++.+++++.++.++.|+.|..+                    .+++ +.|+|. 
T Consensus        32 ~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d~~~~~~~~~~~~~~~fp~l~D~~~~v~-~~ygv~~  110 (164)
T 4gqc_A           32 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVI-KLYNVYH  110 (164)
T ss_dssp             TSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESSCHHHHHHHHHHTTCCSEEEECTTSHHH-HHTTCEE
T ss_pred             CCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCCCHHHHHHHHHhcCcccceeecCchHHH-HHcCCcc
Confidence            6889999998 9999999999999999999998767999999876431                    3566 678773 


Q ss_pred             ---------CCCeEEEEeCCCCCeeecC----CCCCCHHHHHHHHHHh
Q 018045          326 ---------SFPTILFFPKHSSKPIKYP----SERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ---------~~Pt~~~~~~g~~~~~~~~----~~~~~~~~l~~~i~~~  360 (361)
                               ..|++++++..+.+...+.    .+..+.+++.+.|+++
T Consensus       111 ~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~l  158 (164)
T 4gqc_A          111 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI  158 (164)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCHHHHHHHHHHH
T ss_pred             cccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence                     3688888854443222211    1234788888888765

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=98.44  E-value=1.1e-06  Score=72.05  Aligned_cols=90  Identities=10%  Similarity=0.064  Sum_probs=64.5

Q ss_pred             CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------hHHHHHcCCC
Q 018045          268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~~v  324 (361)
                      .+++++|+||+ +||++|....|.+.++.+++ . ++.++.|+.|..+                      ..++ +.|++
T Consensus        41 ~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-~-~v~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv  117 (163)
T 1psq_A           41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-D-NTVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFG-RDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-TEEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHH-HHHTC
T ss_pred             CCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-C-CcEEEEEECCCHHHHHHHHHhcCCCCcEEecCCchhHHH-HHhCC
Confidence            47899999995 99999999999999999888 4 6888888875420                      2455 56666


Q ss_pred             C----C--CCeEEEEeCCCCCeeecCC----CCCCHHHHHHHHHHh
Q 018045          325 G----S--FPTILFFPKHSSKPIKYPS----ERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~----~--~Pt~~~~~~g~~~~~~~~~----~~~~~~~l~~~i~~~  360 (361)
                      .    +  .|++++++..+.....+.|    ...+.+++.+.|+++
T Consensus       118 ~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~l~~l~~l  163 (163)
T 1psq_A          118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             ccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHHHHHHHhC
Confidence            5    3  3999999644433333322    234568888888764

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=98.43  E-value=6.9e-07  Score=78.28  Aligned_cols=92  Identities=11%  Similarity=0.177  Sum_probs=69.8

Q ss_pred             CCCcEEEEEEC-CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045          268 RQEPWLVVLYA-PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a-~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~  319 (361)
                      .++++||+||+ +||++|....|.|.++.+++++.++.++.|.+|...                           ..++ 
T Consensus        76 ~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D~~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~-  154 (240)
T 3qpm_A           76 RGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVDSQFTHLAWIITPRKQGGLGPMKIPLLSDLTHQIS-  154 (240)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTSHHH-
T ss_pred             CCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHhhcCCCCCceeEEeCchHHHH-
Confidence            47899999999 999999999999999999998767999999876421                           3466 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      .+|++++++..+.....+.+   ...+.+++.+.|+.+
T Consensus       155 ~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~l~~l  204 (240)
T 3qpm_A          155 KDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRLVQAF  204 (240)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence            678887      68999999644432222111   135788888888765

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=98.37  E-value=1.2e-06  Score=76.69  Aligned_cols=90  Identities=13%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             CCCcEEEEEE-CCCChhHH-hhHHHHHHHHHHhcCCCe-EEEEEEcCCC---------------------chHHHHHcCC
Q 018045          268 RQEPWLVVLY-APWCQFCQ-AMEGSYVELADKLAGNGV-KVGKFRADGD---------------------QKEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~-~~~p~~~~la~~~~~~~v-~~~~vd~~~~---------------------~~~l~~~~~~  323 (361)
                      .+++++|+|| ++||++|. ...|.|.++++.+++.++ .++.|+.+..                     +..++ +.|+
T Consensus        32 ~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~g  110 (241)
T 1nm3_A           32 DNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKEDEKSENISFIPDGNGEFT-EGMG  110 (241)
T ss_dssp             TTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTSEEEECTTSHHH-HHTT
T ss_pred             CCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHHhcCCCceEEEECCCcHHH-HHhC
Confidence            4789999999 99999999 999999999999976579 8999987642                     03466 6788


Q ss_pred             CC-----------CCCeEEEEeCCCCCeeecCCC--C------CCHHHHHHHHHH
Q 018045          324 LG-----------SFPTILFFPKHSSKPIKYPSE--R------RDVDSLMAFVDA  359 (361)
Q Consensus       324 v~-----------~~Pt~~~~~~g~~~~~~~~~~--~------~~~~~l~~~i~~  359 (361)
                      +.           ..|+.+++++|+.. ..+.+.  .      .+.+++.+.|+.
T Consensus       111 v~~~~~~~g~~~~~~p~t~li~~G~i~-~~~~~~~~~~~~~~~~~~~~il~~l~~  164 (241)
T 1nm3_A          111 MLVGKEDLGFGKRSWRYSMLVKNGVVE-KMFIEPNEPGDPFKVSDADTMLKYLAP  164 (241)
T ss_dssp             CEEECTTTTCCEEECCEEEEEETTEEE-EEEECCSCSSCCCSSSSHHHHHHHHCT
T ss_pred             ceeecccccCcccceeEEEEEECCEEE-EEEEeccCCCccceecCHHHHHHHhhh
Confidence            75           35877777777632 222221  1      467777777653

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=98.36  E-value=9.8e-07  Score=74.00  Aligned_cols=92  Identities=12%  Similarity=0.218  Sum_probs=62.2

Q ss_pred             CCCcE-EEEEECCCChhHHh-hHHHHHHHHHHhcCCCeE-EEEEEcCCCc----------------------hHHHHHcC
Q 018045          268 RQEPW-LVVLYAPWCQFCQA-MEGSYVELADKLAGNGVK-VGKFRADGDQ----------------------KEYAKQKL  322 (361)
Q Consensus       268 ~~~~v-lv~F~a~wC~~C~~-~~p~~~~la~~~~~~~v~-~~~vd~~~~~----------------------~~l~~~~~  322 (361)
                      .++.+ |+.|+++||++|+. ..|.|+++++++++.++. ++.|+.+...                      ..++ +.|
T Consensus        55 ~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~~~~~~~fp~l~D~~~~va-~~y  133 (184)
T 3uma_A           55 KGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATHSGGMGKIHFLSDWNAAFT-KAI  133 (184)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHHTCTTTSEEEECTTCHHH-HHT
T ss_pred             CCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHHhCCCCceEEEEcCchHHH-HHc
Confidence            35654 55566999999999 799999999999876788 8888876520                      3466 678


Q ss_pred             CCC-----------CCCeEEEEeCCCCCeeecC--CCCCCHHHHHHHHHHh
Q 018045          323 QLG-----------SFPTILFFPKHSSKPIKYP--SERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~-----------~~Pt~~~~~~g~~~~~~~~--~~~~~~~~l~~~i~~~  360 (361)
                      ++.           ..|+.+++++|+.......  .+..+..++.+.|++|
T Consensus       134 Gv~~~~~~~g~g~~~~r~tfiIddG~I~~~~~~~~~g~~~~~~~~~vL~~L  184 (184)
T 3uma_A          134 GMEIDLSAGTLGIRSKRYSMLVEDGVVKALNIEESPGQATASGAAAMLELL  184 (184)
T ss_dssp             TCEEEEGGGTCEEEECCEEEEEETTEEEEEEECSSTTCCSTTSHHHHHHHC
T ss_pred             CCceeccccCCcccceeEEEEECCCEEEEEEEeCCCCCCcCCCHHHHHhhC
Confidence            775           3577777787764222221  1345556666666653

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=98.33  E-value=1.3e-06  Score=71.95  Aligned_cols=70  Identities=11%  Similarity=0.120  Sum_probs=53.7

Q ss_pred             CCCcEEEEEE-CCCChhHHh-hHHHHHHHHHHhcCCCe-EEEEEEcCCCc----------------------hHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQA-MEGSYVELADKLAGNGV-KVGKFRADGDQ----------------------KEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~-~~p~~~~la~~~~~~~v-~~~~vd~~~~~----------------------~~l~~~~~  322 (361)
                      .+++++|+|| ++||++|+. ..|.|+++++++++.++ .++.|+.+...                      ..++ +.|
T Consensus        30 ~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~~~~~~fp~l~D~~~~~~-~~~  108 (167)
T 2wfc_A           30 AGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAHGADDKVQMLADPGGAFT-KAV  108 (167)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECTTSHHH-HHT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhcCCCcceEEEECCCCcHH-HHc
Confidence            4677888887 999999999 99999999999976579 99999876420                      3456 667


Q ss_pred             CCCCC-----------CeEEEEeCCCC
Q 018045          323 QLGSF-----------PTILFFPKHSS  338 (361)
Q Consensus       323 ~v~~~-----------Pt~~~~~~g~~  338 (361)
                      ++...           |+.+++++|+.
T Consensus       109 gv~~~~~~~~g~~~~~p~t~lI~~G~I  135 (167)
T 2wfc_A          109 DMELDLSAVLGNVRSKRYSLVIEDGVV  135 (167)
T ss_dssp             TCEECCHHHHSSCEECCEEEEEETTEE
T ss_pred             CCccccccccCcccceEEEEEEeCCEE
Confidence            77543           87777777763

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=98.32  E-value=8.5e-07  Score=66.94  Aligned_cols=59  Identities=19%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc------hHHHHHcCCCCCCCeEEEEeCCC
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ------KEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~------~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      .++.|+++||++|+.+.+.|+++...++  +  |..+|++.+.      ..+. +.+++.++|++  |.+|+
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~~--~--~~~vdi~~~~~~~~~~~~l~-~~~g~~~vP~i--~~~g~   77 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKEG--L--LEFVDITATSDTNEIQDYLQ-QLTGARTVPRV--FIGKE   77 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCTT--S--EEEEEGGGSTTHHHHHHHHH-HHHSCCCSCEE--EETTE
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCCC--c--cEEEEccCCCCHHHHHHHHH-HHhCCCCcCeE--EECCE
Confidence            3677999999999999999988654432  2  5556766541      2467 78899999997  34665

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=98.32  E-value=4.5e-07  Score=69.80  Aligned_cols=58  Identities=14%  Similarity=0.214  Sum_probs=44.9

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeE---EEEEEcCCCc------hHHHHHcCCCCCCCeEEEEeCCC
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVK---VGKFRADGDQ------KEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~---~~~vd~~~~~------~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ...++.|+++||++|+.+.+.|+++.       +.   |..+|++.+.      ..+. +.+++.++|++++  +|+
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~~~-------~~~~~~~~vdi~~~~~~~~~~~~l~-~~~g~~~vP~v~i--~g~   84 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNKFS-------FKRGAYEIVDIKEFKPENELRDYFE-QITGGKTVPRIFF--GKT   84 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTTSC-------BCTTSEEEEEGGGSSSHHHHHHHHH-HHHSCCSSCEEEE--TTE
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHHcC-------CCcCceEEEEccCCCChHHHHHHHH-HHhCCCCcCEEEE--CCE
Confidence            34578899999999999999887643       44   7788888761      2677 7899999998743  565

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=98.31  E-value=9.2e-06  Score=67.05  Aligned_cols=44  Identities=20%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             CCCcEEEEEECCCCh-hHHhhHHHHHHHHHHhcC--CCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLAG--NGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~-~C~~~~p~~~~la~~~~~--~~v~~~~vd~~  311 (361)
                      .+|++||+||.+||+ .|....+.+.++.+.++.  .++.++.|.+|
T Consensus        31 ~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvD   77 (170)
T 4hde_A           31 KGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVD   77 (170)
T ss_dssp             TTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecC
Confidence            589999999999996 799999999999888854  36888888776

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=98.29  E-value=1.9e-06  Score=71.45  Aligned_cols=92  Identities=12%  Similarity=0.139  Sum_probs=61.3

Q ss_pred             CCCcEEEEEE-CCCChhHH-hhHHHHHHHHHHhcCCCeEEEE-EEcCCC----------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQ-AMEGSYVELADKLAGNGVKVGK-FRADGD----------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~-~~~p~~~~la~~~~~~~v~~~~-vd~~~~----------------------~~~l~~~~~  322 (361)
                      .+++++|.|| ++||++|. ...|.|.+++++|+..++.++. |..|..                      +.+++ +.|
T Consensus        42 ~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~~~~~~~fp~l~D~~~~va-~~y  120 (173)
T 3mng_A           42 KGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRAHKAEGKVRLLADPTGAFG-KET  120 (173)
T ss_dssp             TTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHHTTCTTTCEEEECTTCHHH-HHH
T ss_pred             CCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHhCCCCceEEEECCChHHH-HHh
Confidence            3565655555 99999999 5899999999999875677775 766542                      03566 677


Q ss_pred             CCC-------------CCCeEEEEeCCCCCeeecC--CCCCCHHHHHHHHHHh
Q 018045          323 QLG-------------SFPTILFFPKHSSKPIKYP--SERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~-------------~~Pt~~~~~~g~~~~~~~~--~~~~~~~~l~~~i~~~  360 (361)
                      ++.             ..|+.+++++|+.......  +..++.++....|++|
T Consensus       121 Gv~~~~~~~~~~g~~~~~r~tfvIDdG~I~~~~v~~~~~g~~~~~~~~vl~~l  173 (173)
T 3mng_A          121 DLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSLAPNIISQL  173 (173)
T ss_dssp             TCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSSTTSHHHHHHHC
T ss_pred             CCCcccccccccCCcceEEEEEEEECCEEEEEEEeCCCCCcchHHHHHHHHhC
Confidence            764             3599999986653222111  1135666777666654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=98.29  E-value=1e-06  Score=72.41  Aligned_cols=68  Identities=12%  Similarity=0.144  Sum_probs=52.9

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v  324 (361)
                      .+++++|+|| +.||++|....|.+.++.+++ . ++.++.|+.|..                      +..++ +.|++
T Consensus        42 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv  118 (165)
T 1q98_A           42 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-S-NTIVLCISADLPFAQARFCGAEGIENAKTVSTFRNHALH-SQLGV  118 (165)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-T-TEEEEEEESSCHHHHTTCTTTTTCTTEEEEECTTCTHHH-HHTTC
T ss_pred             CCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHcCCCceEEeeccccchHH-HHhCc
Confidence            4689999999 899999999999999999998 4 688888876532                      13466 67777


Q ss_pred             CC---------CCeEEEEeCCCC
Q 018045          325 GS---------FPTILFFPKHSS  338 (361)
Q Consensus       325 ~~---------~Pt~~~~~~g~~  338 (361)
                      ..         .|++++++..+.
T Consensus       119 ~~~~~~~~g~~~p~~~liD~~G~  141 (165)
T 1q98_A          119 DIQTGPLAGLTSRAVIVLDEQNN  141 (165)
T ss_dssp             EECSSTTTTSBCCEEEEECTTSB
T ss_pred             eecccccCCccceeEEEEcCCCE
Confidence            43         499999964443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=98.28  E-value=9.7e-06  Score=75.01  Aligned_cols=109  Identities=9%  Similarity=0.044  Sum_probs=84.5

Q ss_pred             CCceecCcccHHHHHhhcCC-CCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHH---HcCC
Q 018045          249 QNLVTLNRTGMENLARLDHR-QEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAK---QKLQ  323 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~---~~~~  323 (361)
                      +.|.++|.+++.++..  +. .+..++.|+.++|+.|..+.+.++++|+++.+ .++.|+.+|++.. ..++.   +.|+
T Consensus       226 p~v~elt~~~~~~~~~--~~~~~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~~-~~~~~~~~~~~g  302 (350)
T 1sji_A          226 PTLRRLRPEDMFETWE--DDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDDF-PLLVAYWEKTFK  302 (350)
T ss_dssp             CSEEECCTTTHHHHHH--SCSSSEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGGC-HHHHHHHHHHCC
T ss_pred             cchhhcChhhHHHHhc--CCCCCcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchhh-HHHHHHHHhhcC
Confidence            5789999999998765  11 25566779999999999999999999999974 4699999999988 66551   4688


Q ss_pred             CC-CCCeEEEEeCCCCCeee--cCC--CCCCHHHHHHHHHHh
Q 018045          324 LG-SFPTILFFPKHSSKPIK--YPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~-~~Pt~~~~~~g~~~~~~--~~~--~~~~~~~l~~~i~~~  360 (361)
                      +. ++|++++++..+.....  +..  +..+.++|.+||+++
T Consensus       303 i~~~~P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~  344 (350)
T 1sji_A          303 IDLFKPQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDV  344 (350)
T ss_dssp             SCTTSCEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHH
T ss_pred             CCccCCcEEEEecccccccccCCCcccccCCHHHHHHHHHHH
Confidence            87 58999999763321233  221  368999999999875

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A

Probab=98.26  E-value=1.5e-06  Score=77.52  Aligned_cols=143  Identities=12%  Similarity=0.065  Sum_probs=80.7

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC---------CCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCCh--HHHHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG---------RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDA--VEVQA   76 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~---------~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~--~~~~~   76 (361)
                      .+++|++|||.||+++ .|+.+..         .++..++++.+...  ..+.++++++.+|+ +++++.-..  ..+..
T Consensus        39 ~~vvvgLSGGvDSsv~a~La~~a~~~lg~~~~~~~v~av~~~~~~~~--d~~~A~~va~~lgi~~~~~i~i~~~~~~~~~  116 (271)
T 1kqp_A           39 KGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGTQQ--DEDDAQLALKFIKPDKSWKFDIKSTVSAFSD  116 (271)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSSCT--THHHHHHHHHHHCCSEEEECCCHHHHHHHHH
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEeCCCCCC--CHHHHHHHHHhcCCCeEEEeccHHHHHHHHH
Confidence            5899999999999877 6666543         35677888876432  47889999999998 776653221  11111


Q ss_pred             HHHh-cCCCCCCccchhchhh--ccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEE
Q 018045           77 LVRS-KGLFSFYEDGHQECCR--VRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKW  151 (361)
Q Consensus        77 ~~~~-~~~~~~~~~~~~~cc~--~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~  151 (361)
                      .... .+.+   ..+...|..  ..+...+..+..  +..++-||. .+|..   .....     .++      .+.--+
T Consensus       117 ~l~~~~~~~---~~~~~~~N~~aR~r~~~l~~~A~~~g~lvl~tgn-~~E~~---~Gy~t-----~~g------d~~~~~  178 (271)
T 1kqp_A          117 QYQQETGDQ---LTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDH-AAEAV---TGFFT-----KYG------DGGADL  178 (271)
T ss_dssp             HHHHHHSCC---CCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCC-HHHHT---TTCSC-----TTT------TTCCSB
T ss_pred             HHhhhcCCC---CcchhhhhHHHHHHHHHHHHHHHHCCCEEEECcc-HHHhc---cCCcc-----ccc------cccccc
Confidence            1111 1321   112222221  123333333333  333333443 44431   11111     111      011238


Q ss_pred             eeCccCcHHHHHHHHHhCCCC
Q 018045          152 NPVANVKGNDIWNFLRTMDVP  172 (361)
Q Consensus       152 ~Pi~~W~~~dv~~yi~~~~lp  172 (361)
                      .||.+++..||+...+..|+|
T Consensus       179 ~Pl~~l~K~eVr~la~~lglp  199 (271)
T 1kqp_A          179 LPLTGLTKRQGRTLLKELGAP  199 (271)
T ss_dssp             CTTTTCCHHHHHHHHHHTTCC
T ss_pred             cccccCCHHHHHHHHHHcCCC
Confidence            899999999999999999987

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.26  E-value=6.4e-06  Score=71.29  Aligned_cols=89  Identities=19%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc------------------------------hHHHHH
Q 018045          271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ------------------------------KEYAKQ  320 (361)
Q Consensus       271 ~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~------------------------------~~l~~~  320 (361)
                      .+|+.|+++||++|....+.+.+++++++..++.++.|.+|...                              ..++ +
T Consensus        34 vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D~~~~~~~~~~~i~~~~~~~~~~~~~fpil~D~~~~va-~  112 (224)
T 1prx_A           34 GILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELA-I  112 (224)
T ss_dssp             EEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHH-H
T ss_pred             EEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhCcccccCcCcceeecCchHHH-H
Confidence            56666789999999999999999999998767999998876420                              2455 6


Q ss_pred             cCCCC------------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          321 KLQLG------------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~------------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      .|++.            .+|++++++..+.....+.+   ..++.+++...|+.+
T Consensus       113 ~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eil~~i~~l  167 (224)
T 1prx_A          113 LLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISL  167 (224)
T ss_dssp             HTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHH
T ss_pred             HhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            67763            37999999654433222221   136889999988876

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=98.26  E-value=2.7e-06  Score=69.85  Aligned_cols=89  Identities=12%  Similarity=0.081  Sum_probs=63.5

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------hHHHHHcCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------KEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------------------~~l~~~~~~v  324 (361)
                      .+++++|+|| +.||++|....|.++++.++ .  ++.++.|..|..+                      ..++ +.|++
T Consensus        45 ~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~-~--~~~vv~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~~~gv  120 (166)
T 3p7x_A           45 AGKKKLISVVPSIDTGVCDQQTRKFNSDASK-E--EGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFG-ENYGV  120 (166)
T ss_dssp             TTSCEEEEECSCTTSHHHHHHHHHHHHHSCT-T--TSEEEEEESSCHHHHHHHHHHHTCSSCEEEECTTTCHHH-HHHTC
T ss_pred             CCCcEEEEEECCCCCCccHHHHHHHHHHhhc-C--CCEEEEEECCCHHHHHHHHHHcCCCceEEccCCchhHHH-HHhCC
Confidence            4788999999 78999999999999999877 3  5888888765421                      3455 56777


Q ss_pred             CC------CCeEEEEeCCCCCeee-c---CCCCCCHHHHHHHHHHh
Q 018045          325 GS------FPTILFFPKHSSKPIK-Y---PSERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~------~Pt~~~~~~g~~~~~~-~---~~~~~~~~~l~~~i~~~  360 (361)
                      ..      .|++++++..+..... +   .....+.+++.+.|+++
T Consensus       121 ~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~il~~l~~l  166 (166)
T 3p7x_A          121 VMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI  166 (166)
T ss_dssp             EETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHTC
T ss_pred             ccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHHHHHHhcC
Confidence            64      8999999644432222 2   12245678888888764

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=98.25  E-value=1.3e-06  Score=77.07  Aligned_cols=92  Identities=11%  Similarity=0.159  Sum_probs=68.4

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~  319 (361)
                      .++.+||+|| ++||++|....|.|.+++++|++.++.++.|.+|...                           ..++ 
T Consensus        90 kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D~~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va-  168 (254)
T 3tjj_A           90 RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQIS-  168 (254)
T ss_dssp             TTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTSCCSCSSCEEECTTSHHH-
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhcCCcccccceeeCcHHHHH-
Confidence            4789999999 9999999999999999999998767999999886431                           2455 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCCeeecC---CCCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------SFPTILFFPKHSSKPIKYP---SERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~~~~~~---~~~~~~~~l~~~i~~~  360 (361)
                      +.|++.      .+|++++++..+.....+.   ....+.+++.+.|+.+
T Consensus       169 ~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L~al  218 (254)
T 3tjj_A          169 KDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAF  218 (254)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHH
T ss_pred             HHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHhh
Confidence            667774      4799999964443222211   1236788888888765

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}

Probab=98.24  E-value=1.3e-06  Score=86.55  Aligned_cols=142  Identities=17%  Similarity=0.189  Sum_probs=89.2

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-C-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-G-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSF   86 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~   86 (361)
                      ++++|++|||.||+++ .|+.+. + .++..++++++...+++.+.++++++++|++++++.-.. .+..+........+
T Consensus       327 ~~vvvglSGGvDSsv~a~la~~alG~~~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~i~~-~~~~~~~~l~~~~~  405 (590)
T 3n05_A          327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEP-MFDAYMASLGLTGL  405 (590)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCSSCCHHHHHHHHHHHHHHTCEEEECCSHH-HHHHHHHHHCCCTH
T ss_pred             CcEEEEcCCCHHHHHHHHHHHHHhCcccEEEEEECCCCCCHHHHHHHHHHHHHcCCcEEEEEChH-HHHHHHHHhcccch
Confidence            6899999999999877 677664 6 678899999998889999999999999999988774332 22333222211000


Q ss_pred             CccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHH
Q 018045           87 YEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWN  164 (361)
Q Consensus        87 ~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~  164 (361)
                         .........+...+..+..  +..++.|| .++|.. .  .......+           ..--+.||.+++..+|+.
T Consensus       406 ---~~~n~~ar~r~~~l~~~A~~~g~~vl~TG-n~se~~-~--Gy~t~~gd-----------~~~~~~Pl~~l~K~eVr~  467 (590)
T 3n05_A          406 ---AEENLQSRLRGTTLMAISNQEGHIVLAPG-NKSELA-V--GYSTLYGD-----------SVGAYGPIKDVYKTSIFR  467 (590)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHTCEEBCCC-CHHHHH-H--TCCCSSCT-----------TSCSBCTTTTSCHHHHHH
T ss_pred             ---hhhHHHHHHHHHHHHHHHHhcCCEEEeCC-CHHHHh-c--CchhhcCC-----------CccceeecCCCcHHHHHH
Confidence               0001111122333333333  45677788 555542 1  11110011           112378999999999999


Q ss_pred             HHHhCC
Q 018045          165 FLRTMD  170 (361)
Q Consensus       165 yi~~~~  170 (361)
                      ..+..|
T Consensus       468 la~~lg  473 (590)
T 3n05_A          468 LAEWRN  473 (590)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            998776

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=98.23  E-value=3.8e-06  Score=69.27  Aligned_cols=91  Identities=14%  Similarity=0.180  Sum_probs=63.6

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHH------------------HcCCCC-
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAK------------------QKLQLG-  325 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~------------------~~~~v~-  325 (361)
                      .+++++|+|| ++||++|....|.+.++.+++ . ++.++.|.+|..+  ...++                  +.|++. 
T Consensus        46 ~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~  123 (171)
T 2yzh_A           46 KDVVQVIITVPSLDTPVCETETKKFNEIMAGM-E-GVDVTVVSMDLPFAQKRFCESFNIQNVTVASDFRYRDMEKYGVLI  123 (171)
T ss_dssp             CSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-T-TEEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTTCGGGGGTCBB
T ss_pred             CCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-C-CceEEEEeCCCHHHHHHHHHHcCCCCeEEeecCccCcHHHhCCEe
Confidence            4789999999 899999999999999999988 4 7999999886531  11220                  233332 


Q ss_pred             --------CCCeEEEEeCCCCCeeecCC----CCCCHHHHHHHHHHh
Q 018045          326 --------SFPTILFFPKHSSKPIKYPS----ERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 --------~~Pt~~~~~~g~~~~~~~~~----~~~~~~~l~~~i~~~  360 (361)
                              ..|++++++..+.....+.+    ...+.+++.+.|+++
T Consensus       124 ~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~ll~~l~~l  170 (171)
T 2yzh_A          124 GEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNYDEVVNKVKEL  170 (171)
T ss_dssp             CSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCCHHHHHHHHHC
T ss_pred             cccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCHHHHHHHHHhh
Confidence                    15899999644433333322    245678899988876

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=98.22  E-value=1.5e-06  Score=73.82  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v  324 (361)
                      .+++++|+|| +.||++|....|.++++.+++ . ++.++.|..|..                      +..++ +.|++
T Consensus        77 ~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-~-~v~vv~Is~D~~~~~~~~~~~~~~~~f~~l~D~~~~~~~-~~ygv  153 (200)
T 3zrd_A           77 AGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-E-NTVVLCISSDLPFAQSRFCGAEGLSNVITLSTLRGADFK-QAYGV  153 (200)
T ss_dssp             TTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-T-TEEEEEEESSCHHHHTTCTTTTTCTTEEEEETTSCTHHH-HHTTC
T ss_pred             CCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-C-CCEEEEEECCCHHHHHHHHHHcCCCCceEEecCchHHHH-HHhCc
Confidence            5789999999 789999999999999999999 4 699998887642                      13455 66776


Q ss_pred             C---------CCCeEEEEeCCC
Q 018045          325 G---------SFPTILFFPKHS  337 (361)
Q Consensus       325 ~---------~~Pt~~~~~~g~  337 (361)
                      .         ..|++++++..+
T Consensus       154 ~~~~~~~~g~~~p~~~lID~~G  175 (200)
T 3zrd_A          154 AITEGPLAGLTARAVVVLDGQD  175 (200)
T ss_dssp             EECSSTTTTSBCCEEEEECTTS
T ss_pred             eeecccCCCccccEEEEECCCC
Confidence            4         369999995443

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=1.4e-05  Score=66.37  Aligned_cols=105  Identities=13%  Similarity=0.103  Sum_probs=77.1

Q ss_pred             cCcccHHHHHhhc-----CCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-----------
Q 018045          254 LNRTGMENLARLD-----HRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-----------  314 (361)
Q Consensus       254 l~~~~f~~~~~~~-----~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-----------  314 (361)
                      .-..+|++.++..     ++.|+++|+++++||..|..+....   +++.+.++. ++.+...|++..+           
T Consensus        35 F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~-nfV~w~~dv~~~e~~~~~~~~~~~  113 (178)
T 2ec4_A           35 FFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLTKDSNRARFLTMCNR  113 (178)
T ss_dssp             CCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH-TEEEEEEECCSHHHHHHHHHHHHH
T ss_pred             eeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc-CEEEEEEeCCCchhhhhhhhhhhh
Confidence            3457788777654     4689999999999999999998654   667777776 7999999998762           


Q ss_pred             ---hHHHH--HcCCCCCCCeEEEEeCC--CCCeeecCCCCCCHHHHHHHHHH
Q 018045          315 ---KEYAK--QKLQLGSFPTILFFPKH--SSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       315 ---~~l~~--~~~~v~~~Pt~~~~~~g--~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                         ..++.  +.|++.++|+++++...  ....+....|..++++|.+.|.+
T Consensus       114 ~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~  165 (178)
T 2ec4_A          114 HFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMA  165 (178)
T ss_dssp             HTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHH
Confidence               12330  23899999999999432  22233333347899999888764

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0

Probab=98.17  E-value=4.4e-06  Score=74.37  Aligned_cols=151  Identities=12%  Similarity=0.113  Sum_probs=86.6

Q ss_pred             HhHhC-CcEEEEecchHHHHHH-HHHHHc-----------CCCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCC
Q 018045            5 LEKFG-NDIAIAFSGAEDVALI-EYAHLT-----------GRPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPD   70 (361)
Q Consensus         5 ~~~~~-~~i~vs~SGGKDS~~l-~l~~~~-----------~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~   70 (361)
                      +++.+ ++++|++|||.||+++ .|+.+.           +.++..++++.+.  .+..+.++++++.+|+ +.+++.- 
T Consensus        35 l~~~g~~~vvvglSGGvDSal~a~l~~~A~~~Lg~~~~~~~~~v~av~~p~~~--~~~~~~A~~~a~~lgi~~~~~i~i-  111 (279)
T 3q4g_A           35 LTEARYKSLVLGISGGVDSTTCGRLAQLAVEELNQQHNTTEYQFIAVRLPYGE--QKDEDEAQLALSFIRPTHSVSVNI-  111 (279)
T ss_dssp             HHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEECCSSS--CSCHHHHHHHHHHHCCSEEEECCC-
T ss_pred             HHHcCCCCEEEEccCCHHHHHHHHHHHHHHHHhCcccccCCceEEEEEecCCC--hHHHHHHHHHHHHhCCCeEEEEEC-
Confidence            34444 6899999999999877 664442           3457778888664  3347889999999999 6666532 


Q ss_pred             hHHHHHH-------HHhcCCC--CCCccchhchh--hccccHHHHHHHccCCEEEEee-eccCCccCccCCCceecCCCC
Q 018045           71 AVEVQAL-------VRSKGLF--SFYEDGHQECC--RVRKVRPLRRALKGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVF  138 (361)
Q Consensus        71 ~~~~~~~-------~~~~~~~--~~~~~~~~~cc--~~~K~~pl~~~~~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~  138 (361)
                      ...+..+       ....+..  .....+...|.  ...++..+..+.......+.|. +++|..   ...     -.+|
T Consensus       112 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~NiqaR~R~~~Ly~~A~~~g~lVlgTgn~sE~~---~Gy-----~Tky  183 (279)
T 3q4g_A          112 KAGVDGLHAASHHALANTGLIPSDPAKVDFIKGNVKARARMVAQYEIAGYVGGLVLGTDHSAENI---TGF-----YTKF  183 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHTEEEBCCCCHHHHH---HTC-----SCTT
T ss_pred             HHHHHHHHHHHHHHhhhhcccccCCCcccchhhhHHHHHHHHHHHHHHHHCCCEEecCccHHhhh---ccc-----hhhc
Confidence            2222222       1112211  00111222232  4444544544444444555554 444431   111     1112


Q ss_pred             cCCcCCCCCeEEEeeCccCcHHHHHHHHHhCCCC
Q 018045          139 EGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVP  172 (361)
Q Consensus       139 ~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp  172 (361)
                      +.      +---++||.+.+..+|++..+..|+|
T Consensus       184 GD------~~~di~Pl~dl~Kt~Vr~LA~~lgiP  211 (279)
T 3q4g_A          184 GD------GACDLAPLFGLNKRQVRLLAKTLGAP  211 (279)
T ss_dssp             TT------TCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred             CC------cccceeecCCCcHHHHHHHHHHhCCc
Confidence            10      12248999999999999999999875

>3bj5_A Protein disulfide-isomerase; thioredoxin fold, chaperone, endoplasmic reticulum, isomeras membrane, redox-active center; 2.20A {Homo sapiens}

Probab=98.17  E-value=2.3e-05  Score=62.97  Aligned_cols=106  Identities=8%  Similarity=0.113  Sum_probs=78.6

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEE-EECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc--CCCchHHHHHcCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVV-LYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA--DGDQKEYAKQKLQLG  325 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~-F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~--~~~~~~l~~~~~~v~  325 (361)
                      +-|.++|.+++..+..   ..-++.++ |....-..-..+.+.+.++|+.+++ .+.|+.||.  +.+ ..+. +.|++.
T Consensus        14 PLV~e~t~en~~~~~~---~~~~~~~l~f~~~~~~~~~~~~~~~~~vAk~fkg-ki~Fv~vd~~~~~~-~~~l-~~fGl~   87 (147)
T 3bj5_A           14 PLVIEFTEQTAPKIFG---GEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-KILFAFIDSDHTDN-QRIL-EFFGLK   87 (147)
T ss_dssp             -CEEECCTTTHHHHHS---SSCCEEEEEECCTTSSSHHHHHHHHHHHHHTTTT-TCEEEEECTTCGGG-HHHH-HHTTCC
T ss_pred             CeeEEeccccHHHHhc---CCCceEEEEEecCCcHhHHHHHHHHHHHHHHcCC-ceEEEEEecchHhH-HHHH-HHcCCC
Confidence            4588999999988875   55555544 4433334466788999999999998 899999999  555 5677 899998


Q ss_pred             C--CCeEEEEeC-CCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 S--FPTILFFPK-HSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~--~Pt~~~~~~-g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .  +|+++++.. +...-..+..+..+.+.|.+|++++
T Consensus        88 ~~~~P~v~i~~~~~~~~Ky~~~~~~~t~~~i~~Fv~d~  125 (147)
T 3bj5_A           88 KEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRF  125 (147)
T ss_dssp             GGGCSEEEEEECSSSCEEECCSCCCCCHHHHHHHHHHH
T ss_pred             cccCCEEEEEecccccccCCCCcccCCHHHHHHHHHHH
Confidence            6  999999975 3321233333478999999999875

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=98.15  E-value=7.3e-06  Score=71.31  Aligned_cols=91  Identities=14%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             CCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----------------------------hHHHH
Q 018045          269 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----------------------------KEYAK  319 (361)
Q Consensus       269 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----------------------------~~l~~  319 (361)
                      ++.+||+|| ++||+.|....+.+.++.++++..++.++.|.+|...                            ..++ 
T Consensus        29 k~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D~~~~~~~~~~~i~~~~~~~~~~~fpil~D~~~~va-  107 (233)
T 2v2g_A           29 NSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCDNVADHKEWSEDVKCLSGVKGDMPYPIIADETRELA-  107 (233)
T ss_dssp             SSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHTCCSSCSSCEEECTTCHHH-
T ss_pred             CCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHHHHhhCcccCCceEEEECChHHHH-
Confidence            348889998 9999999999999999999997667999988876420                            2455 


Q ss_pred             HcCCCC------------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          320 QKLQLG------------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~------------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.|++.            .+|++++++..+.....+.+   ..++.+++...|+.+
T Consensus       108 ~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~~~eilr~l~~L  163 (233)
T 2v2g_A          108 VKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRNFSEILRVIDSL  163 (233)
T ss_dssp             HHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             HHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            567764            47999999654433222211   136889999988876

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.13  E-value=9.2e-07  Score=75.00  Aligned_cols=45  Identities=22%  Similarity=0.449  Sum_probs=41.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGD  313 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~  313 (361)
                      +.+++||.||+.||++|+.+.|.+   +++++.+++ ++.|.+++++.+
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~~~  159 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVNFM  159 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECSSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccCcC
Confidence            357899999999999999999999   999999987 899999999875

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.12  E-value=6.1e-06  Score=69.54  Aligned_cols=42  Identities=10%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~  310 (361)
                      ..+++|+.|+.+|||+|..+.|.+.++.+.+++ ++.|..+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence            467889999999999999999999999999876 677776664

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.12  E-value=4.8e-06  Score=61.23  Aligned_cols=74  Identities=15%  Similarity=0.318  Sum_probs=53.7

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---Hc-CCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QK-LQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~-~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      -++.|.++|||+|++.+..|++.       ++.|..+|++.+ ++...   +. .+.+++|++++ .+|.  ...    .
T Consensus         5 ~I~vYs~~~Cp~C~~aK~~L~~~-------gi~y~~idi~~d-~~~~~~~~~~~~G~~tVP~I~i-~Dg~--~l~----~   69 (92)
T 2lqo_A            5 ALTIYTTSWCGYCLRLKTALTAN-------RIAYDEVDIEHN-RAAAEFVGSVNGGNRTVPTVKF-ADGS--TLT----N   69 (92)
T ss_dssp             CEEEEECTTCSSHHHHHHHHHHT-------TCCCEEEETTTC-HHHHHHHHHHSSSSSCSCEEEE-TTSC--EEE----S
T ss_pred             cEEEEcCCCCHhHHHHHHHHHhc-------CCceEEEEcCCC-HHHHHHHHHHcCCCCEeCEEEE-eCCE--EEe----C
Confidence            47889999999999999887652       588999999987 55430   22 26789999754 5565  222    2


Q ss_pred             CCHHHHHHHHHHh
Q 018045          348 RDVDSLMAFVDAL  360 (361)
Q Consensus       348 ~~~~~l~~~i~~~  360 (361)
                      .+.++|.++|.++
T Consensus        70 ~~~~el~~~L~el   82 (92)
T 2lqo_A           70 PSADEVKAKLVKI   82 (92)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            5678898888765

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*

Probab=98.12  E-value=6.2e-06  Score=73.52  Aligned_cols=143  Identities=10%  Similarity=0.098  Sum_probs=80.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcC-----------CCceEEEccCCCCcHHHHHHHHHHHHHhCC-cEEEEcCCh--HHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTG-----------RPFRVFSLDTGRLNPETYRFFDEVEKHFGI-RIEYMFPDA--VEV   74 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~-----------~~i~v~~~dtg~~~pet~~~v~~~~~~~g~-~i~~~~p~~--~~~   74 (361)
                      .+++|++|||-||+++ .|+.+..           .++..++++.+..  ...+.++++++.+|+ +++++.-..  ..+
T Consensus        41 ~~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~--~~~~dA~~va~~lgi~~~~~i~i~~~~~~~  118 (275)
T 1wxi_A           41 KSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQ--ADEQDCQDAIAFIQPDRVLTVNIKGAVLAS  118 (275)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSC--TTHHHHHHHHHHHCCSEEEECCCHHHHHHH
T ss_pred             CCEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCc--cCHHHHHHHHHHcCCCeEEEEecHHHHHHH
Confidence            4799999999999877 6665531           2677788887643  357889999999998 776653221  111


Q ss_pred             HHHHHhcCCCCCCccchhchhh--ccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEE
Q 018045           75 QALVRSKGLFSFYEDGHQECCR--VRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVK  150 (361)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~cc~--~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~  150 (361)
                      .......|.+   ..+...|..  ..+...+..+.....  ++-||.. +|..   ....     ..++      .+.--
T Consensus       119 ~~~l~~~g~~---~~~~~~~N~~aR~r~~~l~~~A~~~g~lvlgTgn~-~E~~---~Gy~-----t~~g------d~~~~  180 (275)
T 1wxi_A          119 EQALREAGIE---LSDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHA-AEAI---TGFF-----TKYG------DGGTD  180 (275)
T ss_dssp             HHHHHHHTCC---CCHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHT---TTCS-----CTTT------TTCCS
T ss_pred             HHHHHhcCCC---CCCchhhhhhhhHHHHHHHHHHHHCCCEEEECccH-HHHc---cCcc-----cccC------CCccc
Confidence            1112222321   112112221  222333333333333  3334433 3321   1111     0111      01123


Q ss_pred             EeeCccCcHHHHHHHHHhCCCC
Q 018045          151 WNPVANVKGNDIWNFLRTMDVP  172 (361)
Q Consensus       151 ~~Pi~~W~~~dv~~yi~~~~lp  172 (361)
                      +.||.+++..||+...+..|+|
T Consensus       181 ~~PL~~l~K~eVr~la~~lglp  202 (275)
T 1wxi_A          181 INPLYRLNKRQGKQLLAALACP  202 (275)
T ss_dssp             BCTTTTCCHHHHHHHHHHTTCC
T ss_pred             eeeccCCCHHHHHHHHHHhCCc
Confidence            8999999999999999999986

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=98.11  E-value=6.1e-06  Score=61.64  Aligned_cols=60  Identities=22%  Similarity=0.340  Sum_probs=45.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcC-CCCCCCeEEEEeCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKL-QLGSFPTILFFPKHS  337 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~-~v~~~Pt~~~~~~g~  337 (361)
                      ++..-++.|+++||++|+.+++.|++.       ++.|..+|++.+ ++...   +.. +..++|++  |.+|+
T Consensus        13 ~~~~~v~vy~~~~Cp~C~~ak~~L~~~-------~i~y~~idI~~~-~~~~~~l~~~~~g~~~vP~i--fi~g~   76 (99)
T 3qmx_A           13 AVSAKIEIYTWSTCPFCMRALALLKRK-------GVEFQEYCIDGD-NEAREAMAARANGKRSLPQI--FIDDQ   76 (99)
T ss_dssp             CCCCCEEEEECTTCHHHHHHHHHHHHH-------TCCCEEEECTTC-HHHHHHHHHHTTTCCCSCEE--EETTE
T ss_pred             cCCCCEEEEEcCCChhHHHHHHHHHHC-------CCCCEEEEcCCC-HHHHHHHHHHhCCCCCCCEE--EECCE
Confidence            456678889999999999999999875       367788899887 54430   334 89999987  34665

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.10  E-value=4.2e-06  Score=65.90  Aligned_cols=66  Identities=11%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--ch----HHHHHcCCCCCCCeE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--QK----EYAKQKLQLGSFPTI  330 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--~~----~l~~~~~~v~~~Pt~  330 (361)
                      +.+++++.   .. .+ +.|+++||++|+.+.+.|+++.       +.|..+|++..  .+    .+. +.+++.++|++
T Consensus        18 ~~~~~~i~---~~-~v-vvf~~~~Cp~C~~~~~~L~~~~-------i~~~~vdid~~~~~~~~~~~l~-~~~g~~~vP~l   84 (130)
T 2cq9_A           18 NQIQETIS---DN-CV-VIFSKTSCSYCTMAKKLFHDMN-------VNYKVVELDLLEYGNQFQDALY-KMTGERTVPRI   84 (130)
T ss_dssp             HHHHHHHH---HS-SE-EEEECSSCSHHHHHHHHHHHHT-------CCCEEEETTTSTTHHHHHHHHH-HHHSSCCSSEE
T ss_pred             HHHHHHHc---CC-cE-EEEEcCCChHHHHHHHHHHHcC-------CCcEEEECcCCcCcHHHHHHHH-HHhCCCCcCEE
Confidence            44566554   33 34 4499999999999999998762       45566777654  12    377 78899999998


Q ss_pred             EEEeCCC
Q 018045          331 LFFPKHS  337 (361)
Q Consensus       331 ~~~~~g~  337 (361)
                      +  .+|+
T Consensus        85 ~--i~G~   89 (130)
T 2cq9_A           85 F--VNGT   89 (130)
T ss_dssp             E--ETTE
T ss_pred             E--ECCE
Confidence            4  3665

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=98.09  E-value=6.4e-06  Score=62.19  Aligned_cols=65  Identities=15%  Similarity=0.269  Sum_probs=47.1

Q ss_pred             ccHHHHHhhcCCCCcEEEEEEC-----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYA-----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSF  327 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~  327 (361)
                      +.++++++   .+ .++| |++     +||++|+.+.+.|.++       ++.|..+|++.+ +.    +. ..+++.++
T Consensus         8 ~~~~~~i~---~~-~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~~~-~~~~~~l~-~~~g~~~v   73 (105)
T 2yan_A            8 ERLKVLTN---KA-SVML-FMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILED-EEVRQGLK-AYSNWPTY   73 (105)
T ss_dssp             HHHHHHHT---SS-SEEE-EESBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGGGC-HHHHHHHH-HHHTCCSS
T ss_pred             HHHHHHhc---cC-CEEE-EEecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECCCC-HHHHHHHH-HHHCCCCC
Confidence            34555553   33 4444 777     9999999999999876       377888999887 55    44 55789999


Q ss_pred             CeEEEEeCCC
Q 018045          328 PTILFFPKHS  337 (361)
Q Consensus       328 Pt~~~~~~g~  337 (361)
                      |+++  .+|+
T Consensus        74 P~v~--i~g~   81 (105)
T 2yan_A           74 PQLY--VKGE   81 (105)
T ss_dssp             CEEE--ETTE
T ss_pred             CeEE--ECCE
Confidence            9983  4665

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.09  E-value=2.1e-05  Score=73.28  Aligned_cols=110  Identities=11%  Similarity=0.064  Sum_probs=84.6

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC-CeEEEEEEcCCCchHHH---HHcCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYA---KQKLQL  324 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-~v~~~~vd~~~~~~~l~---~~~~~v  324 (361)
                      +.|.+++.+++.++.. ....++.++.|+.++|+.|..+.+.++++|+.+++. .+.|+.||++.. ....   .+.|++
T Consensus       228 p~v~elt~~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~-~~~l~~~~~~fgl  305 (367)
T 3us3_A          228 STLRKLKPESMYETWE-DDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDF-PLLVPYWEKTFDI  305 (367)
T ss_dssp             CSEEECCGGGHHHHHH-SCBTTEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGC-TTTHHHHHHHHTC
T ss_pred             cceeecChhhHHHHHh-hccCCcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccc-hhHHHHHHHhcCC
Confidence            5689999999887764 112456778899999999999999999999999974 599999999987 5332   045788


Q ss_pred             C-CCCeEEEEeCCCCC--eeecCC--CCCCHHHHHHHHHHh
Q 018045          325 G-SFPTILFFPKHSSK--PIKYPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~-~~Pt~~~~~~g~~~--~~~~~~--~~~~~~~l~~~i~~~  360 (361)
                      . .+|+++++...+..  ...+.+  +..+.++|.+|++++
T Consensus       306 ~~~~P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~  346 (367)
T 3us3_A          306 DLSAPQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDV  346 (367)
T ss_dssp             CTTSCEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHH
T ss_pred             CCCCCeEEEEecccccceeecCCcccccCCHHHHHHHHHHH
Confidence            7 89999999765431  222333  368999999999875

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=98.08  E-value=6.8e-06  Score=60.26  Aligned_cols=71  Identities=10%  Similarity=0.057  Sum_probs=51.7

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----c----hHHHHHcCCCCCCCeEEEEeCCCCCeeec
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----Q----KEYAKQKLQLGSFPTILFFPKHSSKPIKY  343 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----~----~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~  343 (361)
                      -++.|+++||++|+.+.+.++++.       +.+-.+|++..    .    .++. +.+++.++|++++  +|+  .  .
T Consensus        13 ~v~ly~~~~Cp~C~~~~~~L~~~g-------i~~~~~~v~~~~~~~~~~~~~~l~-~~~g~~~vP~l~~--~g~--~--i   78 (92)
T 3ic4_A           13 EVLMYGLSTCPHCKRTLEFLKREG-------VDFEVIWIDKLEGEERKKVIEKVH-SISGSYSVPVVVK--GDK--H--V   78 (92)
T ss_dssp             SSEEEECTTCHHHHHHHHHHHHHT-------CCCEEEEGGGCCHHHHHHHHHHHH-HHHSSSCSCEEEE--TTE--E--E
T ss_pred             eEEEEECCCChHHHHHHHHHHHcC-------CCcEEEEeeeCCccchHHHHHHHH-HhcCCCCcCEEEE--CCE--E--E
Confidence            377899999999999999888762       44555666631    1    4555 6788999999987  554  2  2


Q ss_pred             CCCCCCHHHHHHHHH
Q 018045          344 PSERRDVDSLMAFVD  358 (361)
Q Consensus       344 ~~~~~~~~~l~~~i~  358 (361)
                      .|  .+.++|.++|+
T Consensus        79 ~G--~~~~~l~~~l~   91 (92)
T 3ic4_A           79 LG--YNEEKLKELIR   91 (92)
T ss_dssp             ES--CCHHHHHHHHH
T ss_pred             eC--CCHHHHHHHhc
Confidence            23  58899999886

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=98.08  E-value=2.7e-06  Score=65.82  Aligned_cols=69  Identities=14%  Similarity=0.242  Sum_probs=49.0

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhh-HHHHHHHHHHhcCCCeEEEEEEcCCCc------hHHHHHcCCCCCCCe
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAM-EGSYVELADKLAGNGVKVGKFRADGDQ------KEYAKQKLQLGSFPT  329 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~-~p~~~~la~~~~~~~v~~~~vd~~~~~------~~l~~~~~~v~~~Pt  329 (361)
                      +.+++++.   ..  .++.|+++||++|+.+ ++.++++..   . .+.|..+|++.+.      .++. +.+++.++|+
T Consensus        16 ~~~~~~i~---~~--~Vvvf~~~~Cp~C~~alk~~L~~~~~---~-~i~~~~vdid~~~~~~~~~~~l~-~~~g~~tvP~   85 (118)
T 3c1r_A           16 KHVKDLIA---EN--EIFVASKTYCPYCHAALNTLFEKLKV---P-RSKVLVLQLNDMKEGADIQAALY-EINGQRTVPN   85 (118)
T ss_dssp             HHHHHHHH---HS--SEEEEECSSCHHHHHHHHHHHTTSCC---C-GGGEEEEEGGGSTTHHHHHHHHH-HHHSCCSSCE
T ss_pred             HHHHHHHc---cC--cEEEEEcCCCcCHHHHHHHHHHHcCC---C-CCCeEEEECccCCChHHHHHHHH-HHhCCCCcCE
Confidence            44555554   33  2666999999999999 887766531   1 3788888988761      2577 7889999998


Q ss_pred             EEEEeCCC
Q 018045          330 ILFFPKHS  337 (361)
Q Consensus       330 ~~~~~~g~  337 (361)
                      +  |.+|+
T Consensus        86 v--fi~g~   91 (118)
T 3c1r_A           86 I--YINGK   91 (118)
T ss_dssp             E--EETTE
T ss_pred             E--EECCE
Confidence            7  44666

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.07  E-value=6.1e-06  Score=71.22  Aligned_cols=89  Identities=12%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHHHcCC
Q 018045          271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAKQKLQ  323 (361)
Q Consensus       271 ~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~~~~~  323 (361)
                      .+|+.|+++||+.|....+.+.++.++++..++.++.|.+|...                           ..++ +.|+
T Consensus        34 vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D~~~~~~~~~~~i~~~~~~~~~~fpil~D~~~~va-~~yg  112 (220)
T 1xcc_A           34 AILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA-NKLK  112 (220)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHH-HHHT
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHHHhcCCCCcceeEECchhHHH-HHhC
Confidence            45555689999999999999999999998767999999886420                           2455 5677


Q ss_pred             CC------------CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          324 LG------------SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~------------~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      +.            .+|++++++..+.....+.+   ..++.++|...|+++
T Consensus       113 v~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~~ell~~i~~l  164 (220)
T 1xcc_A          113 IMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSL  164 (220)
T ss_dssp             CEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHH
T ss_pred             CCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHH
Confidence            63            37999999654432222211   136899999998876

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=98.07  E-value=3e-06  Score=61.82  Aligned_cols=55  Identities=22%  Similarity=0.395  Sum_probs=44.1

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC--CCchHHHHHcC-CCCCCCeEEEEeCCC
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD--GDQKEYAKQKL-QLGSFPTILFFPKHS  337 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~--~~~~~l~~~~~-~v~~~Pt~~~~~~g~  337 (361)
                      -++.|+++||++|+.+.+.+++.       ++.|..+|++  .. .++. +.+ ++.++|++++  +|+
T Consensus         7 ~v~~y~~~~C~~C~~~~~~L~~~-------~i~~~~vdv~~~~~-~~l~-~~~~~~~~vP~l~~--~g~   64 (89)
T 2klx_A            7 EIILYTRPNCPYCKRARDLLDKK-------GVKYTDIDASTSLR-QEMV-QRANGRNTFPQIFI--GDY   64 (89)
T ss_dssp             CEEEESCSCCTTTHHHHHHHHHH-------TCCEEEECSCHHHH-HHHH-HHHHSSCCSCEEEE--TTE
T ss_pred             eEEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCHHHH-HHHH-HHhCCCCCcCEEEE--CCE
Confidence            47789999999999999998875       3667788887  44 6777 788 9999999853  565

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=98.06  E-value=4.9e-06  Score=66.86  Aligned_cols=66  Identities=11%  Similarity=0.178  Sum_probs=46.5

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--ch----HHHHHcCCCCCCCeE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--QK----EYAKQKLQLGSFPTI  330 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--~~----~l~~~~~~v~~~Pt~  330 (361)
                      +.+++++.   .. .+ +.|+++||++|+.+.+.|+++.       +.|..+|++..  .+    .+. +.+++.++|++
T Consensus        40 ~~~~~~i~---~~-~V-vvf~~~~Cp~C~~~k~~L~~~~-------i~~~~vdId~~~~~~~~~~~L~-~~~g~~tvP~i  106 (146)
T 2ht9_A           40 NQIQETIS---DN-CV-VIFSKTSCSYCTMAKKLFHDMN-------VNYKVVELDLLEYGNQFQDALY-KMTGERTVPRI  106 (146)
T ss_dssp             HHHHHHHH---HC-SE-EEEECTTCHHHHHHHHHHHHHT-------CCCEEEEGGGCTTHHHHHHHHH-HHHSCCCSCEE
T ss_pred             HHHHHHhc---CC-CE-EEEECCCChhHHHHHHHHHHcC-------CCeEEEECccCcCCHHHHHHHH-HHhCCCCcCeE
Confidence            45666664   33 44 4499999999999999998762       44556666643  12    377 78999999998


Q ss_pred             EEEeCCC
Q 018045          331 LFFPKHS  337 (361)
Q Consensus       331 ~~~~~g~  337 (361)
                      +  .+|+
T Consensus       107 f--i~G~  111 (146)
T 2ht9_A          107 F--VNGT  111 (146)
T ss_dssp             E--ETTE
T ss_pred             E--ECCE
Confidence            4  3665

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=98.06  E-value=4e-06  Score=69.36  Aligned_cols=44  Identities=18%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             CCcEEEEEECCCChhHHhh-HHHHHHHHHHhcCCCeE-EEEEEcCC
Q 018045          269 QEPWLVVLYAPWCQFCQAM-EGSYVELADKLAGNGVK-VGKFRADG  312 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~-~p~~~~la~~~~~~~v~-~~~vd~~~  312 (361)
                      ++.+|++||++||++|+.. .|.|.++.+++++.++. ++.|+.+.
T Consensus        44 k~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~   89 (171)
T 2pwj_A           44 KKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAIND   89 (171)
T ss_dssp             SEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSC
T ss_pred             CCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            3577888999999999999 99999999999765688 88888764

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0

Probab=98.03  E-value=5e-06  Score=74.05  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=82.5

Q ss_pred             HhHhC-CcEEEEecchHHHHHH-HHHHHc-------CC--CceEEEccCCCCcHHHHHHHHHHHHHhC-CcEEEEcCC--
Q 018045            5 LEKFG-NDIAIAFSGAEDVALI-EYAHLT-------GR--PFRVFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPD--   70 (361)
Q Consensus         5 ~~~~~-~~i~vs~SGGKDS~~l-~l~~~~-------~~--~i~v~~~dtg~~~pet~~~v~~~~~~~g-~~i~~~~p~--   70 (361)
                      ++..+ ++++|++|||.||+++ .|+.+.       +.  .+..+.+..+  .+...+-++++++.+| ++.+++.-.  
T Consensus        41 l~~~g~~~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~--~~~~~~dA~~~a~~lg~i~~~~i~i~~~  118 (285)
T 3dpi_A           41 LRTAGLRACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYG--AQHDEADARRALAFVRADETLTVDVKPA  118 (285)
T ss_dssp             HHHHTCCEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSC--C---CHHHHHHHHHHCCSEEEECCCHHH
T ss_pred             HHHcCCCcEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCC--CHHHHHHHHHHHHHcCCCcEEEEEChHH
Confidence            34444 6899999999999877 555442       22  3445555544  3456677889999998 677665322  


Q ss_pred             hHHHHHHHHhcCCCCCC--ccchhchh--hccccHHHHHHHccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCC
Q 018045           71 AVEVQALVRSKGLFSFY--EDGHQECC--RVRKVRPLRRALKGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGV  145 (361)
Q Consensus        71 ~~~~~~~~~~~~~~~~~--~~~~~~cc--~~~K~~pl~~~~~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~  145 (361)
                      ...+.......|...-.  ..+...|.  ..+++..+..+.......+.|. +++|..        ......++      
T Consensus       119 ~~~~~~~l~~~g~~~~~~~~~~~~~~NiqaR~Rm~~L~~~A~~~g~lVlgTgn~sE~~--------~Gy~T~~G------  184 (285)
T 3dpi_A          119 ADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGARNGVVIGTDHAAESV--------MGFFTKFG------  184 (285)
T ss_dssp             HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCHHHHH--------HHHHHCCC------
T ss_pred             HHHHHHHHHhcCccccccCCCchhhhhHHHHHHHHHHHHHHHHCCCEEEeCccHHhhh--------CCcccccC------
Confidence            12222222222321100  01112232  4445555555555555555555 333321        01111111      


Q ss_pred             CCeEEEeeCccCcHHHHHHHHHhCCCC
Q 018045          146 GSLVKWNPVANVKGNDIWNFLRTMDVP  172 (361)
Q Consensus       146 ~~~~~~~Pi~~W~~~dv~~yi~~~~lp  172 (361)
                      .+.--++||.+.+..||++..+..|+|
T Consensus       185 D~~~~~~Pl~~l~K~eV~~la~~lg~p  211 (285)
T 3dpi_A          185 DGGADVLPLAGLTKRRVRALARMLGAD  211 (285)
T ss_dssp             CCCCSBCTTTTCCHHHHHHHHHHTTCC
T ss_pred             CCceeEeeecCCcHHHHHHHHHHcCCC
Confidence            011248999999999999999998875

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=98.02  E-value=1.9e-05  Score=59.29  Aligned_cols=76  Identities=14%  Similarity=0.195  Sum_probs=50.5

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----hHHH---HHcCCCCCCCeEEEEeCCCCCee
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----KEYA---KQKLQLGSFPTILFFPKHSSKPI  341 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~~l~---~~~~~v~~~Pt~~~~~~g~~~~~  341 (361)
                      .+.-++.|+++||++|+.+++.+++.       ++.+-.+|++..+    .++.   .+.+++.++|++++  +|+. . 
T Consensus        20 ~~~~v~ly~~~~Cp~C~~ak~~L~~~-------~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i--~~~~-~-   88 (103)
T 3nzn_A           20 DRGKVIMYGLSTCVWCKKTKKLLTDL-------GVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTII--NDEK-A-   88 (103)
T ss_dssp             CCSCEEEEECSSCHHHHHHHHHHHHH-------TBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEE--TTTE-E-
T ss_pred             CCCeEEEEcCCCCchHHHHHHHHHHc-------CCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEE--CCCE-E-
Confidence            34457789999999999999999875       2455566766420    1222   03468999999876  3321 2 


Q ss_pred             ecCCCCCCHHHHHHHHH
Q 018045          342 KYPSERRDVDSLMAFVD  358 (361)
Q Consensus       342 ~~~~~~~~~~~l~~~i~  358 (361)
                        .| ..+.++|.++|+
T Consensus        89 --ig-g~~~~~l~~~L~  102 (103)
T 3nzn_A           89 --IV-GFKEKEIRESLG  102 (103)
T ss_dssp             --EE-SCCHHHHHHHTT
T ss_pred             --EE-cCCHHHHHHHhC
Confidence              23 377888888763

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=98.02  E-value=3.2e-05  Score=68.05  Aligned_cols=97  Identities=10%  Similarity=0.235  Sum_probs=77.5

Q ss_pred             CCceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      +.|.+|+ .+++++++.   .++.++|-|+++|   |....+.|.++|+.+.+ .+.|+.+   .+ .+++ ++|++.. 
T Consensus         6 P~v~~l~s~~~~~~~l~---~~~v~vvgff~~~---~~~~~~~f~~~A~~lr~-~~~F~~~---~~-~~v~-~~~~~~~-   72 (252)
T 2h8l_A            6 PASVPLRTEEEFKKFIS---DKDASIVGFFDDS---FSEAHSEFLKAASNLRD-NYRFAHT---NV-ESLV-NEYDDNG-   72 (252)
T ss_dssp             CCEEECCSHHHHHHHHT---SSSCEEEEEESCT---TSHHHHHHHHHHHHTTT-TSCEEEE---CC-HHHH-HHHCSSS-
T ss_pred             CCceeecCHHHHHHHhh---cCCeEEEEEECCC---CChHHHHHHHHHHhccc-CcEEEEE---Ch-HHHH-HHhCCCC-
Confidence            4577884 566777776   7788999999998   55678899999999977 7888877   34 6788 8999997 


Q ss_pred             CeEEEEeCCC------CCeeec-CCCCCCHHHHHHHHHH
Q 018045          328 PTILFFPKHS------SKPIKY-PSERRDVDSLMAFVDA  359 (361)
Q Consensus       328 Pt~~~~~~g~------~~~~~~-~~~~~~~~~l~~~i~~  359 (361)
                      |++++|+.+.      .....| .| ..+.++|.+||+.
T Consensus        73 p~i~~fk~~~~~~kf~e~~~~y~~g-~~~~~~l~~fi~~  110 (252)
T 2h8l_A           73 EGIILFRPSHLTNKFEDKTVAYTEQ-KMTSGKIKKFIQE  110 (252)
T ss_dssp             EEEEEECCGGGCCTTSCSEEECCCS-SCCHHHHHHHHHH
T ss_pred             CcEEEEcchhhcccccccccccCCC-CcCHHHHHHHHHh
Confidence            9999998641      236788 77 5899999999986

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A

Probab=98.01  E-value=5.5e-06  Score=71.73  Aligned_cols=126  Identities=17%  Similarity=0.236  Sum_probs=79.7

Q ss_pred             cEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCc------HHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLN------PETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGL   83 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~------pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~   83 (361)
                      ++++++||||||++. +++.+.+.++..++...+...      ..-.+.++.+++.+|+++.++.....           
T Consensus         6 Kvvvl~SGGkDSs~al~~l~~~G~eV~~L~~~~~~~~~s~~~h~~~~e~a~~~A~~LGIpl~~v~~~g~-----------   74 (237)
T 3rjz_A            6 DVAVLYSGGKDSNYALYWAIKNRFSVKFLVTMVSENEESYMYHTINANLTDLQARALGIPLVKGFTQGE-----------   74 (237)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECC--------CCSSSHHHHHHHHHTCCEEEEEC--------------
T ss_pred             EEEEEecCcHHHHHHHHHHHHcCCeEEEEEEEcCCCCCccccCCccHHHHHHHHHHcCCCEEEEECCCC-----------
Confidence            799999999999866 788888877766654433221      11145788899999999987743211           


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                                  .....+.+.++++  +.+.+++|--..+.  +|......-..          -++..+.||.....++
T Consensus        75 ------------~~~e~e~l~~~l~~~~i~~vv~Gdi~s~y--qr~r~e~vc~~----------~gl~~~~PLW~~d~~~  130 (237)
T 3rjz_A           75 ------------KEKEVEDLKRVLSGLKIQGIVAGALASKY--QRKRIEKVAKE----------LGLEVYTPAWGRDAKE  130 (237)
T ss_dssp             ---------------CHHHHHHHHTTSCCSEEECC---CCS--HHHHHHHHHHH----------TTCEEECSSSSCCHHH
T ss_pred             ------------chHHHHHHHHHHHhcCCcEEEECCcchHH--HHHHHHHHHHH----------cCCEEEccccCCCHHH
Confidence                        0112345556665  56788888888775  44433221111          1466799999999999


Q ss_pred             HHHHHHhCCC
Q 018045          162 IWNFLRTMDV  171 (361)
Q Consensus       162 v~~yi~~~~l  171 (361)
                      +..-+...|+
T Consensus       131 Ll~e~i~~G~  140 (237)
T 3rjz_A          131 YMRELLNLGF  140 (237)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHCCC
Confidence            8887777665

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.98  E-value=1.1e-05  Score=64.94  Aligned_cols=80  Identities=19%  Similarity=0.358  Sum_probs=59.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-----C-----------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-----D-----------------------------  313 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-----~-----------------------------  313 (361)
                      ..+.+|+.|+.++|++|+++.+.++++     + ++.+..++.--     +                             
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l-----~-~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~~~~g~~~~   86 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM-----T-DVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDWMRKGKFPV   86 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC-----C-SEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHHHHHCCCCT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc-----C-ceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHHHhCCCCCC
Confidence            567899999999999999999998765     2 46655443210     0                             


Q ss_pred             -----------chHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          314 -----------QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       314 -----------~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                                 +..++ ++++|+++||+++ .+|+  .  ..| ..+.+.|.++|++.
T Consensus        87 ~~~~~~~~v~~~~~la-~~~gI~gtPt~vi-~nG~--~--i~G-~~~~~~l~~~i~~~  137 (147)
T 3gv1_A           87 GGSICDNPVAETTSLG-EQFGFNGTPTLVF-PNGR--T--QSG-YSPMPQLEEIIRKN  137 (147)
T ss_dssp             TCCCCSCSHHHHHHHH-HHTTCCSSCEEEC-TTSC--E--EES-CCCTTHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHH-HHhCCCccCEEEE-ECCE--E--eeC-CCCHHHHHHHHHHH
Confidence                       14677 7899999999998 6665  2  334 67889999999875

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.97  E-value=3.1e-05  Score=63.99  Aligned_cols=42  Identities=14%  Similarity=0.128  Sum_probs=35.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHh--cCCCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL--AGNGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~--~~~~v~~~~vd~  310 (361)
                      ..+..|+.|+..+||+|+.+.|.+.++.+.+  .+ ++.+...+.
T Consensus        26 ~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~   69 (175)
T 1z6m_A           26 NAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLF   69 (175)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEEC
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeC
Confidence            4667899999999999999999999998888  55 677776554

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1

Probab=97.97  E-value=1.2e-05  Score=72.81  Aligned_cols=118  Identities=11%  Similarity=0.042  Sum_probs=80.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHh-------CCcEEEEcCChHHHHHHHHhc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHF-------GIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~-------g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      ++++|++|| .||+++ +|+.+.|.++..+|++++.   ...+.++++++++       +++++++.+    +.+..   
T Consensus       180 ~kvlvllSG-vDS~vaa~ll~~~G~~v~~v~~~~~~---~~~~~a~~~a~~l~~~~~~~~i~~~vv~~----~~~~~---  248 (307)
T 1vbk_A          180 GRMIGILHD-ELSALAIFLMMKRGVEVIPVYIGKDD---KNLEKVRSLWNLLKRYSYGSKGFLVVAES----FDRVL---  248 (307)
T ss_dssp             CEEEEECSS-HHHHHHHHHHHHBTCEEEEEEESCSS---HHHHHHHHHHHHHHTTCTTSCCCCEEESS----HHHHH---
T ss_pred             CcEEEEEeC-CcHHHHHHHHHhCCCeEEEEEEEECH---HHHHHHHHHHHHHhhhccCCCCcEEEeCC----CHHHH---
Confidence            589999999 999777 8889999999999999553   4567788888888       677776631    11111   


Q ss_pred             CCCCCCccchhchhhccccHHHHHHH--ccCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcH
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRRAL--KGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKG  159 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~  159 (361)
                                             .+.  .+.+.++||+...|-..++..+..  .+..        ....-++||..++.
T Consensus       249 -----------------------~~A~~~ga~~I~tG~~~~~~~~qt~~l~~--~~~~--------~~~~vl~PL~~~~K  295 (307)
T 1vbk_A          249 -----------------------KLIRDFGVKGVIKGLRPNDLNSEVSEITE--DFKM--------FPVPVYYPLIALPE  295 (307)
T ss_dssp             -----------------------HHHHHHTCCEEECCCCGGGCCTTCHHHHH--HHHH--------CSSCEECHHHHSCH
T ss_pred             -----------------------HHHHHcCCCEEEECcccchhccccHHHhh--hccC--------cCCeEEEccCCCCH
Confidence                                   111  277899999987653112111111  1100        01235889999999


Q ss_pred             HHHHHHHHhCCC
Q 018045          160 NDIWNFLRTMDV  171 (361)
Q Consensus       160 ~dv~~yi~~~~l  171 (361)
                      +||.++.++.|+
T Consensus       296 ~eI~~~a~~iGl  307 (307)
T 1vbk_A          296 EYIKSVKERLGL  307 (307)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCC
Confidence            999999988764

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=97.94  E-value=6.5e-05  Score=62.97  Aligned_cols=42  Identities=14%  Similarity=0.235  Sum_probs=35.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~  310 (361)
                      ..+..|+.|+.++||+|..+.|.+.++.+.+.+ ++.|..+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            356689999999999999999999999998876 687776654

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=97.94  E-value=1.6e-05  Score=64.86  Aligned_cols=69  Identities=14%  Similarity=0.210  Sum_probs=54.4

Q ss_pred             CCCcEEEEEE-CCCChhHH-hhHHHHHHHHHHhcCCCeE-EEEEEcCCC----------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQ-AMEGSYVELADKLAGNGVK-VGKFRADGD----------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~-~~~p~~~~la~~~~~~~v~-~~~vd~~~~----------------------~~~l~~~~~  322 (361)
                      .+++++|+|| ++||++|. ...|.|.++.+++++.++. ++.|..+..                      +..++ +.|
T Consensus        34 ~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~  112 (162)
T 1tp9_A           34 AGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYT-HAL  112 (162)
T ss_dssp             TTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHTCTTCSSEEEEECTTSHHH-HHT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHhcCCCCCeEEEECCCchHH-HHc
Confidence            5789999999 89999999 8999999999999755688 888876532                      13466 677


Q ss_pred             CCC------C-----CCeEEEEeCCC
Q 018045          323 QLG------S-----FPTILFFPKHS  337 (361)
Q Consensus       323 ~v~------~-----~Pt~~~~~~g~  337 (361)
                      ++.      +     .|+.+++++|+
T Consensus       113 gv~~~~~~~g~~~~~~p~~~vid~G~  138 (162)
T 1tp9_A          113 GLELDLQEKGLGTRSRRFALLVDDLK  138 (162)
T ss_dssp             TCEEEETTTTSEEEECCEEEEEETTE
T ss_pred             CcccccccCCCCccceeEEEEEECCE
Confidence            775      2     79988888555

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.94  E-value=4.4e-05  Score=67.06  Aligned_cols=98  Identities=8%  Similarity=0.086  Sum_probs=78.1

Q ss_pred             CCceecCc-ccHHHHHhhcCC-CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTLNR-TGMENLARLDHR-QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l~~-~~f~~~~~~~~~-~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      +.|.+|++ +++++++.   . ++.++|-|++++|   ....+.|.++|+.+.+ .+.|+.+.   + .+++ ++|++..
T Consensus         6 P~v~~l~s~~~~~~~~~---~~~~v~vVgff~~~~---~~~~~~F~~~A~~lr~-~~~F~~t~---~-~~v~-~~~~v~~   73 (250)
T 3ec3_A            6 PPSKEILTLKQVQEFLK---DGDDVVILGVFQGVG---DPGYLQYQDAANTLRE-DYKFHHTF---S-TEIA-KFLKVSL   73 (250)
T ss_dssp             CSSEECCCHHHHHHHHH---HCSSCEEEEECSCTT---CHHHHHHHHHHHHHTT-TCCEEEEC---C-HHHH-HHHTCCS
T ss_pred             CCceecCCHHHHHHHHh---cCCCeEEEEEEcCCC---chHHHHHHHHHHhhhc-CcEEEEEC---c-HHHH-HHcCCCC
Confidence            45777854 77888776   6 8899999999984   5788899999999977 78898753   4 6888 8899987


Q ss_pred             CCeEEEEeCC------CCCeeecCC-CCCCHHHHHHHHHH
Q 018045          327 FPTILFFPKH------SSKPIKYPS-ERRDVDSLMAFVDA  359 (361)
Q Consensus       327 ~Pt~~~~~~g------~~~~~~~~~-~~~~~~~l~~~i~~  359 (361)
                       |++++|+.+      ......|.| +..+.++|.+||+.
T Consensus        74 -p~ivlfk~~~~~~kfde~~~~y~g~~~~~~~~l~~fi~~  112 (250)
T 3ec3_A           74 -GKLVLMQPEKFQSKYEPRMHVMDVQGSTEASAIKDYVVK  112 (250)
T ss_dssp             -SEEEEECCGGGCCTTSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred             -CeEEEEecchhhccccccceeccCCCCCCHHHHHHHHHH
Confidence             999999853      122567775 47899999999975

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.90  E-value=2.2e-05  Score=55.97  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=49.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRD  349 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~  349 (361)
                      ++.|+++||++|+.+.+.+++.       ++.|..+|++.+.   .++. +.+++.++|+++  .+|+  .+   +|   
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~~i~~~~~~~~~~~-~~~~~~~vP~l~--~~g~--~i---~g---   64 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPIDGNAAKREEMI-KRSGRTTVPQIF--IDAQ--HI---GG---   64 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECTTCSHHHHHHH-HHHSSCCSCEEE--ETTE--EE---ES---
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------CCCcEEEECCCCHHHHHHHH-HHhCCCCcCEEE--ECCE--EE---eC---
Confidence            6789999999999999988864       3667778887651   2355 678999999984  3665  22   21   


Q ss_pred             HHHHHHHHHH
Q 018045          350 VDSLMAFVDA  359 (361)
Q Consensus       350 ~~~l~~~i~~  359 (361)
                      .++|.+++++
T Consensus        65 ~~~i~~~~~~   74 (82)
T 1fov_A           65 YDDLYALDAR   74 (82)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            3567666653

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=97.88  E-value=5.2e-05  Score=70.98  Aligned_cols=104  Identities=13%  Similarity=0.046  Sum_probs=81.5

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCC-hhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCC--
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWC-QFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG--  325 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC-~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~--  325 (361)
                      +.|.+++.+++.++..   .+.+++|.|+.++| ..++.+...+.+++..+++ .+.|+.+|++.. ..++ +.|++.  
T Consensus       219 p~v~elt~~~~~~~~~---~~~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~-~i~f~~id~~~~-~~~~-~~~gl~~~  292 (382)
T 2r2j_A          219 PLVREITFENGEELTE---EGLPFLILFHMKEDTESLEIFQNEVARQLISEKG-TINFLHADCDKF-RHPL-LHIQKTPA  292 (382)
T ss_dssp             CSSEECCHHHHHHHHT---TCCCEEEEEECTTCCHHHHHHHHHHHHHTGGGTT-TSEEEEEETTTT-HHHH-HHTTCCGG
T ss_pred             CceEecChhhHHHHhc---CCCcEEEEEecCCchHHHHHHHHHHHHHHHHhCC-eeEEEEEchHHh-HHHH-HHcCCCcc
Confidence            5688999999988775   78899999999987 4466666777777767776 899999999998 8888 899997  


Q ss_pred             CCCeEEEEeCCCCCeeecCC--CCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~--~~~~~~~l~~~i~~~  360 (361)
                      .+|.++++..++  ...+..  +..+.+.|.+||+++
T Consensus       293 ~~P~i~i~~~~~--~y~~~~~~~~~~~~~i~~F~~d~  327 (382)
T 2r2j_A          293 DCPVIAIDSFRH--MYVFGDFKDVLIPGKLKQFVFDL  327 (382)
T ss_dssp             GCSEEEEECSSC--EEECCCSGGGGSTTHHHHHHHHH
T ss_pred             CCCEEEEEcchh--cCCCCccccccCHHHHHHHHHHH
Confidence            689999987554  333332  134678999999875

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.88  E-value=1.9e-05  Score=57.80  Aligned_cols=55  Identities=18%  Similarity=0.403  Sum_probs=42.5

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCCCeEEEEeCCC
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      -++.|+++||++|+.+.+.+++.       ++.|..+|++.+ +.    +. +.+++.++|++  |.+|+
T Consensus         7 ~v~ly~~~~C~~C~~~~~~L~~~-------~i~~~~~di~~~-~~~~~~l~-~~~~~~~vP~l--~~~g~   65 (92)
T 2khp_A            7 DVIIYTRPGCPYCARAKALLARK-------GAEFNEIDASAT-PELRAEMQ-ERSGRNTFPQI--FIGSV   65 (92)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHHT-------TCCCEEEESTTS-HHHHHHHH-HHHTSSCCCEE--EETTE
T ss_pred             cEEEEECCCChhHHHHHHHHHHc-------CCCcEEEECCCC-HHHHHHHH-HHhCCCCcCEE--EECCE
Confidence            47889999999999999988764       377888898876 43    44 47889999975  44665

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.88  E-value=1.4e-05  Score=61.06  Aligned_cols=55  Identities=18%  Similarity=0.384  Sum_probs=40.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---ch----HHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---QK----EYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---~~----~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|+++||++|+.+++.|+++       ++.+..+|++..   ..    .+. +.+++.++|++  |.+|+
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~~~~~l~-~~~g~~tvP~i--fi~g~   82 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL-------GVQPLVVELDQLGPQGPQLQKVLE-RLTGQHTVPNV--FVCGK   82 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEEGGGSTTHHHHHHHHHH-HHHSCCSSCEE--EETTE
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCCeEEEeecCCCChHHHHHHHH-HHhCCCCcCEE--EECCE
Confidence            6779999999999999999864       355666777652   12    244 45689999998  44665

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.87  E-value=5.9e-05  Score=62.55  Aligned_cols=41  Identities=22%  Similarity=0.478  Sum_probs=34.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR  309 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd  309 (361)
                      .++++||.|+.-.||+|+.+.|.+.++.+.+.+ ++.+..+.
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~~   60 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE-GAKFQKNH   60 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TCEEEEEE
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCC-ceEEEEEe
Confidence            467899999999999999999999999999876 56666553

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=97.82  E-value=7.1e-05  Score=54.07  Aligned_cols=74  Identities=12%  Similarity=0.128  Sum_probs=49.0

Q ss_pred             cEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCC-----CCCCeEEEEeCCCCCeee
Q 018045          271 PWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQL-----GSFPTILFFPKHSSKPIK  342 (361)
Q Consensus       271 ~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v-----~~~Pt~~~~~~g~~~~~~  342 (361)
                      ..++.|+++||++|+.++..+++..    - .+.+..||.+.+.   .++. +.++.     .++|++++  +|+  .+.
T Consensus         4 m~v~ly~~~~Cp~C~~~~~~L~~~~----i-~~~~~~vd~~~~~~~~~el~-~~~g~~~~~~~~vP~i~i--~g~--~i~   73 (89)
T 3msz_A            4 MKVKIYTRNGCPYCVWAKQWFEENN----I-AFDETIIDDYAQRSKFYDEM-NQSGKVIFPISTVPQIFI--DDE--HIG   73 (89)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHTT----C-CCEEEECCSHHHHHHHHHHH-HTTTCCSSCCCSSCEEEE--TTE--EEE
T ss_pred             eEEEEEEcCCChhHHHHHHHHHHcC----C-CceEEEeecCCChhHHHHHH-HHhCCCCCCCCccCEEEE--CCE--EEe
Confidence            3488899999999999998886642    1 3455555554331   3466 67777     99999865  565  222


Q ss_pred             cCCCCCCHHHHHHHHHHh
Q 018045          343 YPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       343 ~~~~~~~~~~l~~~i~~~  360 (361)
                        |    .+++.++++++
T Consensus        74 --g----~~~i~~~~~~~   85 (89)
T 3msz_A           74 --G----FTELKANADKI   85 (89)
T ss_dssp             --S----HHHHHHTHHHH
T ss_pred             --C----hHHHHHHHHHH
Confidence              2    46777766653

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.00019  Score=61.17  Aligned_cols=93  Identities=13%  Similarity=0.191  Sum_probs=69.2

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .+|.+|++|| ++||+.|....+.|++..++|+..++.++.|.+|..                           +.+++ 
T Consensus        51 ~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~va-  129 (216)
T 3sbc_A           51 KGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSLS-  129 (216)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHHH-
T ss_pred             CCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHHH-
Confidence            5788999999 999999999999999999999876899999987642                           14577 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCC-eee-cC-CCCCCHHHHHHHHHHhC
Q 018045          320 QKLQLG------SFPTILFFPKHSSK-PIK-YP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~-~~~-~~-~~~~~~~~l~~~i~~~~  361 (361)
                      +.|+|-      .++.+++++..+.+ .+. +. .-.++.+++...|+.++
T Consensus       130 k~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l~AlQ  180 (216)
T 3sbc_A          130 RDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLVEAFQ  180 (216)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHHHHhh
Confidence            788873      35777777554432 111 11 12479999999888763

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=97.62  E-value=0.00012  Score=55.50  Aligned_cols=65  Identities=15%  Similarity=0.352  Sum_probs=47.3

Q ss_pred             ccHHHHHhhcCCCCcEEEEEEC-----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCCCCCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYA-----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQLGSF  327 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~v~~~  327 (361)
                      +.+++++.   +++  ++.|+.     +||++|+.+++.|++.       ++.|..+|++.+ ++    +. +..+..++
T Consensus         6 ~~~~~~i~---~~~--vvvy~~g~~~~~~Cp~C~~ak~~L~~~-------~i~~~~vdi~~~-~~~~~~l~-~~~g~~~v   71 (109)
T 1wik_A            6 SGLKVLTN---KAS--VMLFMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILED-EEVRQGLK-TFSNWPTY   71 (109)
T ss_dssp             CCHHHHHT---TSS--EEEEESSTTTCCCSSTHHHHHHHHHHT-------CSCEEEEESSSC-HHHHHHHH-HHHSCCSS
T ss_pred             HHHHHHhc---cCC--EEEEEecCCCCCCCchHHHHHHHHHHc-------CCCeEEEECCCC-HHHHHHHH-HHhCCCCC
Confidence            45677664   343  445777     9999999999998764       478999999987 54    34 45678899


Q ss_pred             CeEEEEeCCC
Q 018045          328 PTILFFPKHS  337 (361)
Q Consensus       328 Pt~~~~~~g~  337 (361)
                      |++  |.+|+
T Consensus        72 P~i--fi~g~   79 (109)
T 1wik_A           72 PQL--YVRGD   79 (109)
T ss_dssp             CEE--ECSSS
T ss_pred             CEE--EECCE
Confidence            984  55666

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=97.59  E-value=5.5e-05  Score=59.30  Aligned_cols=69  Identities=16%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhh-HHHHHHHHHHhcCCCeEEEEEEcCCCc------hHHHHHcCCCCCCCe
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAM-EGSYVELADKLAGNGVKVGKFRADGDQ------KEYAKQKLQLGSFPT  329 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~-~p~~~~la~~~~~~~v~~~~vd~~~~~------~~l~~~~~~v~~~Pt  329 (361)
                      +.+++++.   ..+  ++.|+++||++|+.+ ++.++++...    .+.+..+|++...      .++. +.+++.++|+
T Consensus        28 ~~v~~~i~---~~~--Vvvy~~~~Cp~C~~a~k~~L~~~~~~----~i~~~~vdvd~~~~~~~~~~~L~-~~~g~~tVP~   97 (129)
T 3ctg_A           28 AHVKDLIG---QKE--VFVAAKTYCPYCKATLSTLFQELNVP----KSKALVLELDEMSNGSEIQDALE-EISGQKTVPN   97 (129)
T ss_dssp             HHHHHHHH---HSS--EEEEECTTCHHHHHHHHHHHTTSCCC----GGGEEEEEGGGSTTHHHHHHHHH-HHHSCCSSCE
T ss_pred             HHHHHHHc---CCC--EEEEECCCCCchHHHHHHHHHhcCcc----CCCcEEEEccccCCHHHHHHHHH-HHhCCCCCCE
Confidence            44555554   333  778999999999999 8877765311    1556666666541      3566 7789999999


Q ss_pred             EEEEeCCC
Q 018045          330 ILFFPKHS  337 (361)
Q Consensus       330 ~~~~~~g~  337 (361)
                      +  |.+|+
T Consensus        98 v--fi~g~  103 (129)
T 3ctg_A           98 V--YINGK  103 (129)
T ss_dssp             E--EETTE
T ss_pred             E--EECCE
Confidence            6  44665

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=97.59  E-value=0.00018  Score=59.45  Aligned_cols=99  Identities=15%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             cHHHHHhhcCCCCcEEEEEECCCChhHHh-hHHHHHHHHHHhcCCCe-EEEEEEcCCC----------------------
Q 018045          258 GMENLARLDHRQEPWLVVLYAPWCQFCQA-MEGSYVELADKLAGNGV-KVGKFRADGD----------------------  313 (361)
Q Consensus       258 ~f~~~~~~~~~~~~vlv~F~a~wC~~C~~-~~p~~~~la~~~~~~~v-~~~~vd~~~~----------------------  313 (361)
                      ++.++++   .++.||+.|+++||+.|.. ..|.|.+.+++++..++ .++.|.+|..                      
T Consensus        40 sLsd~~~---Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~VigIS~D~~~~~~~f~~~~~l~~~f~lLsD~  116 (176)
T 4f82_A           40 SVRDQVA---GKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWCVSVNDAFVMGAWGRDLHTAGKVRMMADG  116 (176)
T ss_dssp             EHHHHHT---TCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHTTCTTTSEEEECT
T ss_pred             eHHHHhC---CCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHHHhCCCCCceEEEcC
Confidence            3455443   3335566677999999999 99999999999976578 8888877542                      


Q ss_pred             chHHHHHcCCCC-----------CCCeEEEEeCCCCCeeec-CCCCCCHHHHHHHHHHh
Q 018045          314 QKEYAKQKLQLG-----------SFPTILFFPKHSSKPIKY-PSERRDVDSLMAFVDAL  360 (361)
Q Consensus       314 ~~~l~~~~~~v~-----------~~Pt~~~~~~g~~~~~~~-~~~~~~~~~l~~~i~~~  360 (361)
                      +.+++ +.|++.           ..|+.+++++|+...... ..+..+..+..+.|++|
T Consensus       117 ~~~va-~ayGv~~~~~~~G~g~~s~R~tfII~dG~I~~~~~~~~~~~~~~~a~~vL~~L  174 (176)
T 4f82_A          117 SAAFT-HALGLTQDLSARGMGIRSLRYAMVIDGGVVKTLAVEAPGKFEVSDAASVLATL  174 (176)
T ss_dssp             TCHHH-HHHTCEEECGGGTCCEEECCEEEEEETTEEEEEEECCTTCCSSSSHHHHHHTC
T ss_pred             chHHH-HHhCCCccccccCCCcccccEEEEEcCCEEEEEEEcCCCCcchhhHHHHHHHh
Confidence            13566 677663           247666667776432222 12233444445555444

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=97.58  E-value=8e-05  Score=56.97  Aligned_cols=66  Identities=15%  Similarity=0.324  Sum_probs=45.7

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--c----hHHHHHcCCCCCCCeE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--Q----KEYAKQKLQLGSFPTI  330 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--~----~~l~~~~~~v~~~Pt~  330 (361)
                      +.++++++   +++  ++.|+++|||+|+.+++.|+++       ++.|..+|++..  .    ..+. +..+..++|++
T Consensus         8 ~~~~~~i~---~~~--v~vy~~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd~~~~~~~~~~~l~-~~~g~~tvP~v   74 (114)
T 3h8q_A            8 RHLVGLIE---RSR--VVIFSKSYCPHSTRVKELFSSL-------GVECNVLELDQVDDGARVQEVLS-EITNQKTVPNI   74 (114)
T ss_dssp             HHHHHHHH---HCS--EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTSTTHHHHHHHHH-HHHSCCSSCEE
T ss_pred             HHHHHHhc---cCC--EEEEEcCCCCcHHHHHHHHHHc-------CCCcEEEEecCCCChHHHHHHHH-HHhCCCccCEE
Confidence            44566554   333  4459999999999999998874       356777777752  1    2244 56688999998


Q ss_pred             EEEeCCC
Q 018045          331 LFFPKHS  337 (361)
Q Consensus       331 ~~~~~g~  337 (361)
                      ++  +|+
T Consensus        75 fi--~g~   79 (114)
T 3h8q_A           75 FV--NKV   79 (114)
T ss_dssp             EE--TTE
T ss_pred             EE--CCE
Confidence            66  555

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.55  E-value=9e-05  Score=62.36  Aligned_cols=43  Identities=9%  Similarity=0.205  Sum_probs=39.0

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~  311 (361)
                      +.+++||.|++.||++|+.+.|.+.++.+.+.+ ++.|..+.+.
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            568899999999999999999999999999887 7999888864

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.51  E-value=0.00065  Score=59.55  Aligned_cols=103  Identities=10%  Similarity=0.097  Sum_probs=76.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCCh---h-HHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQ---F-CQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKL  322 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~---~-C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~  322 (361)
                      +.|.++|.+++..+.     +.+++|.|+..-+.   . ...+...+.++|+.+++  ..+.|+.+|.+.. ..+. +.|
T Consensus       114 Plv~e~t~~n~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~vA~~~~~k~~~~~F~~~d~~~~-~~~~-~~f  186 (252)
T 2h8l_A          114 GICPHMTEDNKDLIQ-----GKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKKFLDAGHKLNFAVASRKTF-SHEL-SDF  186 (252)
T ss_dssp             CSSCEECTTTHHHHS-----SSSEEEEEECCBTTTBHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEETTTT-HHHH-GGG
T ss_pred             CCeeecccccHhhhc-----CCCeEEEEeecchhhcchhHHHHHHHHHHHHHHccccCceEEEEEEchHHH-HHHH-HHc
Confidence            468899999998852     34667777754332   1 22477889999999986  1399999999988 7788 899


Q ss_pred             CC----CCCCeEEEEeCCCCCeeecCCCCCCHHH--HHHHHHHh
Q 018045          323 QL----GSFPTILFFPKHSSKPIKYPSERRDVDS--LMAFVDAL  360 (361)
Q Consensus       323 ~v----~~~Pt~~~~~~g~~~~~~~~~~~~~~~~--l~~~i~~~  360 (361)
                      ++    ..+|.++++...+. ...+.+ ..+.+.  |.+|++++
T Consensus       187 gl~~~~~~~P~v~i~~~~~~-ky~~~~-~~t~~~~~i~~F~~~~  228 (252)
T 2h8l_A          187 GLESTAGEIPVVAIRTAKGE-KFVMQE-EFSRDGKALERFLQDY  228 (252)
T ss_dssp             TCCCCSCSSCEEEEECTTSC-EEECCS-CCCTTSHHHHHHHHHH
T ss_pred             CCCCccCCCCEEEEEeCcCc-EecCCc-ccCcchHHHHHHHHHH
Confidence            99    36999999964332 444554 677788  99999875

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=97.51  E-value=0.00033  Score=60.12  Aligned_cols=87  Identities=10%  Similarity=0.112  Sum_probs=61.2

Q ss_pred             CCCcEEEEEECCC-ChhHH-----hhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHH
Q 018045          268 RQEPWLVVLYAPW-CQFCQ-----AMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a~w-C~~C~-----~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~  319 (361)
                      .++++||+||+.| |++|.     ...+.|.++   +.  ++.++.|..|..                      +..++ 
T Consensus        47 ~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~~--gv~VvgIS~Ds~~~~~~f~~~~gl~~fplLsD~~~~~va-  120 (224)
T 3keb_A           47 SHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---WP--HLKLIVITVDSPSSLARARHEHGLPNIALLSTLRGRDFH-  120 (224)
T ss_dssp             TTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---CT--TSEEEEEESSCHHHHHHHHHHHCCTTCEEEESTTCTTHH-
T ss_pred             CCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---cC--CCEEEEEECCCHHHHHHHHHHcCCCCceEEEcCCchHHH-
Confidence            4789999999988 99999     777777776   53  588888876532                      14677 


Q ss_pred             HcCCCCC---------CCeEEEEe-CCCCCeeecC---CCCCCHHHHHHHHHHh
Q 018045          320 QKLQLGS---------FPTILFFP-KHSSKPIKYP---SERRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~~---------~Pt~~~~~-~g~~~~~~~~---~~~~~~~~l~~~i~~~  360 (361)
                      +.|+|..         .|++++++ +|+.......   .+..+.+++.+.|+++
T Consensus       121 k~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd~~evl~~L~~l  174 (224)
T 3keb_A          121 KRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFDFDAIEKLLQEG  174 (224)
T ss_dssp             HHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCCHHHHHHHHHHH
T ss_pred             HHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCCHHHHHHHHHHh
Confidence            7888864         79999996 5542211111   1246788888888765

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=97.47  E-value=0.00021  Score=59.99  Aligned_cols=42  Identities=24%  Similarity=0.534  Sum_probs=35.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~  310 (361)
                      ..++.||.|+..+||+|+.+.|.+   .++.+.+.+ ++.|..++.
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~-~v~~~~~~~   64 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPE-GTKMTKYHV   64 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCT-TCCEEEEEC
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCC-CcEEEEEec
Confidence            357899999999999999999987   689999876 577776664

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*

Probab=97.42  E-value=0.0002  Score=71.79  Aligned_cols=64  Identities=17%  Similarity=0.160  Sum_probs=43.4

Q ss_pred             HhHhC-CcEEEEecchHHHHHH-HHHHH----cC---CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEc
Q 018045            5 LEKFG-NDIAIAFSGAEDVALI-EYAHL----TG---RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMF   68 (361)
Q Consensus         5 ~~~~~-~~i~vs~SGGKDS~~l-~l~~~----~~---~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~   68 (361)
                      +++.+ ++++|++|||.||+++ .|+.+    ++   .++..++++.....+++++.++++++.+|++++++.
T Consensus       356 l~~~g~~~vvvglSGGvDSsvaa~l~~~a~~~lg~~~~~v~~v~m~~~~~~~~~~~~A~~la~~lgi~~~~i~  428 (680)
T 3sdb_A          356 LRALDYPKVVIGVSGGLDSTHALIVATHAMDREGRPRSDILAFALPGFATGEHTKNNAIKLARALGVTFSEID  428 (680)
T ss_dssp             HHHTTSCEEEEECCSSHHHHHHHHHHHHHHHHTTCCGGGEEEEECCC--------CHHHHHHHHHTCEEEECC
T ss_pred             HHHcCCCcEEEEecCCccHHHHHHHHHHHHHHhCCCCceEEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence            44445 6899999999999865 44433    33   467889999877778899999999999999987763

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}

Probab=97.41  E-value=0.00031  Score=70.00  Aligned_cols=151  Identities=15%  Similarity=0.080  Sum_probs=85.8

Q ss_pred             hHhC-CcEEEEecchHHHHHH-HH--------HHHcCCC---------------------------------ceEEEccC
Q 018045            6 EKFG-NDIAIAFSGAEDVALI-EY--------AHLTGRP---------------------------------FRVFSLDT   42 (361)
Q Consensus         6 ~~~~-~~i~vs~SGGKDS~~l-~l--------~~~~~~~---------------------------------i~v~~~dt   42 (361)
                      ++.+ ++++|++|||-||+++ .|        +...+.+                                 +..+|+.+
T Consensus       299 ~~~g~~~vvlglSGGvDSsv~A~Lv~~~~~~a~~alG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~m~~  378 (634)
T 3ilv_A          299 RKSRSKGFVLSLSGGADSSACAIMVAEMIRKGLKELGLTAFLQKSNMETLFDLPALQHLPFEEQAKKITAVFLTTAYQST  378 (634)
T ss_dssp             HHTTCCSEEEECCSSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCGGGCCSSCSSCTTSHHHHHHHHHHHEEEEEEEC
T ss_pred             HHhCCCeEEEEccCCHHHHHHHHHHHHHHHHHHHHhCchhhhhhhhcccccccccccccccccchhHhhhheeeeeecCC
Confidence            3434 6899999999999865 44        1334544                                 55778777


Q ss_pred             CCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHH----HhcCCCCCCc-cc--hhchhhccccHHHHHHHc--cCCEE
Q 018045           43 GRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALV----RSKGLFSFYE-DG--HQECCRVRKVRPLRRALK--GLRAW  113 (361)
Q Consensus        43 g~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~----~~~~~~~~~~-~~--~~~cc~~~K~~pl~~~~~--~~~~~  113 (361)
                      ...-+++++-++++++.+|+++.++.-.. .+..+.    ...|...-+. .+  ...++...+...+.....  +..++
T Consensus       379 ~~ss~~~~~dA~~la~~LGi~~~~IdI~~-~~~~~~~~~~~~~g~~p~~~~~~~~~~N~qaR~R~~~l~~~A~~~g~lvl  457 (634)
T 3ilv_A          379 RNSGDETYTSAKTLAESIGATFYNWSVDE-EIEQYKATIENVIERPLTWEKDDITLQNIQARGRAPIIWMLTNVKQALLI  457 (634)
T ss_dssp             TTCCSHHHHHHHHHHHHHTCEEEEEECHH-HHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHTTHHHHHHHHHHHTCEEB
T ss_pred             CCCCHHHHHHHHHHHHHhCCcEEEEccHH-HHHHHHHHHHHhhCCCcccccCcchhhhhhHHHHHHHHHHHHHhcCCEEe
Confidence            66678999999999999999988764332 222222    1122211111 11  122334444444444433  33333


Q ss_pred             EEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHHHHhC----CCC
Q 018045          114 ITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTM----DVP  172 (361)
Q Consensus       114 i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~----~lp  172 (361)
                      -||. .+|+.  . ..     ...|..      ..--++||.+.++.+|++..+..    +||
T Consensus       458 gTgn-ksE~~--~-Gy-----~T~ygD------~~~~~~Pl~~l~KteVr~la~~l~~~~glp  505 (634)
T 3ilv_A          458 TTSN-RSEGD--V-GY-----ATMDGD------TAGGIAPIAGVDKDFIRSWLRWAEKNRNQH  505 (634)
T ss_dssp             CCCC-HHHHH--T-TC-----SCTTTT------TCSSBBTTTTSCHHHHHHHHHHHHHHSCCG
T ss_pred             ccCc-hhhHh--h-CC-----ccccCC------cccCCcccCCCcHHHHHHHHHHHHHcCCCc
Confidence            3443 33331  1 11     111110      01137899999999999988877    665

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=97.37  E-value=0.0013  Score=56.19  Aligned_cols=105  Identities=10%  Similarity=0.197  Sum_probs=74.2

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-------------
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-------------  313 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-------------  313 (361)
                      +....+++-.+|        .++.+||+|| ++||+.|......|.+..++|+..++.++.|.+|..             
T Consensus        43 d~~g~~vsLsd~--------~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~Ds~~sh~~w~~~~~~~  114 (219)
T 3tue_A           43 NGSFKKISLSSY--------KGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSIDSEYAHLQWTLQDRKK  114 (219)
T ss_dssp             TSCEEEEEGGGG--------TTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGG
T ss_pred             CCCCcEEehHHh--------CCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCCchhhHHHHhhhhHHh
Confidence            344555555555        5788999999 999999999999999999999887899999988652             


Q ss_pred             --------------chHHHHHcCCCC----CC--CeEEEEeC-CCCCeee-cC-CCCCCHHHHHHHHHHhC
Q 018045          314 --------------QKEYAKQKLQLG----SF--PTILFFPK-HSSKPIK-YP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       314 --------------~~~l~~~~~~v~----~~--Pt~~~~~~-g~~~~~~-~~-~~~~~~~~l~~~i~~~~  361 (361)
                                    +.+++ +.|+|-    ++  -.+++++. |....+. +. .-.++.+++...|+.++
T Consensus       115 ~~~~~l~fpllsD~~~~va-~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr~l~aLQ  184 (219)
T 3tue_A          115 GGLGTMAIPILADKTKNIA-RSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLRLLEAFQ  184 (219)
T ss_dssp             TCCCSCSSCEEECTTSHHH-HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             cCccccccccccCcccHHH-HHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHHHHHHhh
Confidence                          14577 788873    33  35566644 4322222 21 22478999999888763

>3ec3_A Protein disulfide-isomerase A4; thioredoxin-like fold, endoplasmic reticulum, glycoprotein, redox-active center; 1.92A {Rattus norvegicus}

Probab=97.32  E-value=0.0028  Score=55.39  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=76.5

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECC-CC---h-hHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAP-WC---Q-FCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQ  323 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~-wC---~-~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~  323 (361)
                      +-|.++|.+|+..+.    .++++++.|+.. ..   . ....+...+.++|+.++  .+.|+.+|.+.. .... +.|+
T Consensus       116 Plv~e~t~~n~~~~~----~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~vAk~~k--ki~F~~~d~~~~-~~~l-~~fg  187 (250)
T 3ec3_A          116 PLVGHRKTSNDAKRY----SKRPLVVVYYSVDFSFDYRTATQFWRNKVLEVAKDFP--EYTFAIADEEDY-ATEV-KDLG  187 (250)
T ss_dssp             CTEEEECTTTHHHHS----CSSSEEEEEECCCCSTTTHHHHHHHHHHHHHHHTTCT--TSEEEEEETTTT-HHHH-HHTT
T ss_pred             CceeecCccchhhhh----ccCccEEEEEecccccccchhHHHHHHHHHHHHHhhc--ceeEEEEcHHHH-HHHH-HHcC
Confidence            458899999988755    367777777753 32   3 34557889999999998  599999999988 7778 7899


Q ss_pred             CCC--C-CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          324 LGS--F-PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       324 v~~--~-Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +..  . |.++++.... ....+..+..+.+.|.+|++++
T Consensus       188 l~~~~~~p~~~~~~~~~-~ky~~~~~~~t~~~i~~Fv~~~  226 (250)
T 3ec3_A          188 LSESGGDVNAAILDESG-KKFAMEPEEFDSDALREFVMAF  226 (250)
T ss_dssp             CSSCSCSCEEEEECTTS-CEEECCCCSCCHHHHHHHHHHH
T ss_pred             CCccCCCcEEEEEcCCC-ceecCCcccCCHHHHHHHHHHH
Confidence            864  4 4777775433 2445553468999999999875

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.30  E-value=0.00011  Score=61.56  Aligned_cols=43  Identities=19%  Similarity=0.411  Sum_probs=36.8

Q ss_pred             CCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADG  312 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~  312 (361)
                      .++++|.|++.|||+|+.+.|.+   .++.+.+.+ ++.|..+++.-
T Consensus        14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~   59 (189)
T 3l9v_A           14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVSL   59 (189)
T ss_dssp             TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECSS
T ss_pred             CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEechh
Confidence            57899999999999999999987   688888876 78888888753

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.0011  Score=51.52  Aligned_cols=69  Identities=9%  Similarity=0.073  Sum_probs=44.1

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--c----hHHHHHcCCCCCCCeE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--Q----KEYAKQKLQLGSFPTI  330 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--~----~~l~~~~~~v~~~Pt~  330 (361)
                      ++|+++++   ..+  ++.|..+|||+|+.++..|.+.   ..- ++.|..+|++..  .    ..+. +..+..++|++
T Consensus         5 ~~~~~ii~---~~~--Vvvysk~~Cp~C~~ak~lL~~~---~~~-~v~~~~idid~~~d~~~~~~~l~-~~~G~~tVP~I   74 (127)
T 3l4n_A            5 KEYSLILD---LSP--IIIFSKSTCSYSKGMKELLENE---YQF-IPNYYIIELDKHGHGEELQEYIK-LVTGRGTVPNL   74 (127)
T ss_dssp             HHHHHHHT---SCS--EEEEECTTCHHHHHHHHHHHHH---EEE-ESCCEEEEGGGSTTHHHHHHHHH-HHHSCCSSCEE
T ss_pred             HHHHHHHc---cCC--EEEEEcCCCccHHHHHHHHHHh---ccc-CCCcEEEEecCCCCHHHHHHHHH-HHcCCCCcceE
Confidence            45777765   443  8889999999999999888874   110 234455555532  1    1233 34578899998


Q ss_pred             EEEeCCC
Q 018045          331 LFFPKHS  337 (361)
Q Consensus       331 ~~~~~g~  337 (361)
                      ++  +|+
T Consensus        75 fI--~G~   79 (127)
T 3l4n_A           75 LV--NGV   79 (127)
T ss_dssp             EE--TTE
T ss_pred             EE--CCE
Confidence            54  554

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.006  Score=54.79  Aligned_cols=101  Identities=11%  Similarity=0.162  Sum_probs=71.5

Q ss_pred             CCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH-HcCC---
Q 018045          249 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK-QKLQ---  323 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~-~~~~---  323 (361)
                      ..+..+ +.+++++++.  ..++++++.|...     ....+.|.++|..+.+ .+.|+.++-.+. ..+.. ++|+   
T Consensus       143 ~~v~~i~~~~~l~~~l~--~~~~~~vi~fs~~-----~~~~~~f~~~A~~~~~-~~~F~~v~~~~~-a~~~~~~~~~~~~  213 (298)
T 3ed3_A          143 SYVKKFVRIDTLGSLLR--KSPKLSVVLFSKQ-----DKISPVYKSIALDWLG-KFDFYSISNKKL-KQLTDMNPTYEKT  213 (298)
T ss_dssp             CCEEECSCGGGHHHHHT--SCSSEEEEEEESS-----SSCCHHHHHHHHHTBT-TEEEEEEEGGGC-CCCCTTCTTSTTC
T ss_pred             cccEEcCCHHHHHHHHh--cCCceEEEEEcCC-----CcchHHHHHHHHHhhc-CcEEEEEcchHh-hhhhhhhhhcccC
Confidence            456777 4477888876  2256677766432     2456899999999988 899999986543 11100 0111   


Q ss_pred             --C-------------CCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          324 --L-------------GSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       324 --v-------------~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                        |             ...|++++|+.....+..|.|+..+.++|.+||.
T Consensus       214 p~i~~~~~~~~~~~~~~~~P~lv~~~~~~~~~~~y~g~~~~~~~i~~fi~  263 (298)
T 3ed3_A          214 PEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKNDISKFLR  263 (298)
T ss_dssp             HHHHHHHHHHHHHHTTCSSCEEEEEETTTTEEEECCCSSCCHHHHHHHHH
T ss_pred             cchhhhhhcccccccccCCCeEEEEcCCCCceEEeccccCCHHHHHHHHH
Confidence              2             6799999998765568999976799999999997

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=96.87  E-value=0.0007  Score=56.41  Aligned_cols=39  Identities=21%  Similarity=0.403  Sum_probs=33.9

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA  310 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~  310 (361)
                      ++++||.|++.|||+|+.+.|.+.++.+.+ +  +.|..+.+
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~-~--v~~~~~p~   60 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA-G--TDIGKMHI   60 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH-T--SCCEEEEC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh-C--CeEEEEec
Confidence            688999999999999999999999999998 4  56666654

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=96.85  E-value=0.0066  Score=51.20  Aligned_cols=43  Identities=12%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHH-HHHHHHhcC-CCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSY-VELADKLAG-NGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~-~~la~~~~~-~~v~~~~vd~  310 (361)
                      ..+..|+.|+...||+|+.+.+.+ ..+.+.|.+ .+|.|...+.
T Consensus        28 ~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~   72 (202)
T 3gha_A           28 DAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNV   72 (202)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEec
Confidence            467789999999999999999986 667777742 3688887664

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=96.82  E-value=0.0027  Score=57.75  Aligned_cols=88  Identities=6%  Similarity=0.027  Sum_probs=60.4

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCC-
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLG-  325 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~-  325 (361)
                      .+|.+||+|| +.||+.|....+.|.+.  .+  .++.++.|+.|..                    +..++ +.|+|. 
T Consensus        23 ~Gk~vvl~F~p~~~tp~C~~e~~~~~~~--~~--~~~~v~gis~D~~~~~~~f~~~~~l~fp~l~D~~~~v~-~~ygv~~   97 (322)
T 4eo3_A           23 YGKYTILFFFPKAGTSGSTREAVEFSRE--NF--EKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILH-EFFNVLE   97 (322)
T ss_dssp             TTSEEEEEECSSTTSHHHHHHHHHHHHS--CC--TTEEEEEEESCCHHHHHHHHHHHTCCSEEEECTTCHHH-HHTTCEE
T ss_pred             CCCeEEEEEECCCCCCCCHHHHHHHHHH--hh--CCCEEEEEeCCCHHHHHHHHHhhCCceEEEEcCchHHH-HhcCCCC
Confidence            5789999999 68999999887777541  12  3688888887642                    14677 789983 


Q ss_pred             ---CCCeEEEEeCCCCCeeecCC--CCCCHHHHHHHHHHh
Q 018045          326 ---SFPTILFFPKHSSKPIKYPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ---~~Pt~~~~~~g~~~~~~~~~--~~~~~~~l~~~i~~~  360 (361)
                         .+|+.++++..+.+...+.+  -...++++.++|+++
T Consensus        98 ~~~~~r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~  137 (322)
T 4eo3_A           98 NGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRL  137 (322)
T ss_dssp             TTEECCEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHH
T ss_pred             CCcCccEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhh
Confidence               57888888554433222222  134678888888875

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=96.71  E-value=0.0015  Score=51.32  Aligned_cols=67  Identities=12%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             ccHHHHHhhcCCCCcEEEEEEC----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCe
Q 018045          257 TGMENLARLDHRQEPWLVVLYA----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPT  329 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt  329 (361)
                      +.+++++.    ...|+|+.++    +||++|+.++..|.+.       ++.|..+|++.+ +++..   +..+..++|.
T Consensus        26 ~~v~~~i~----~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~-------gv~y~~vdI~~d-~~~~~~L~~~~G~~tvP~   93 (135)
T 2wci_A           26 EKIQRQIA----ENPILLYMKGSPKLPSCGFSAQAVQALAAC-------GERFAYVDILQN-PDIRAELPKYANWPTFPQ   93 (135)
T ss_dssp             HHHHHHHH----HCSEEEEESBCSSSBSSHHHHHHHHHHHTT-------CSCCEEEEGGGC-HHHHHHHHHHHTCCSSCE
T ss_pred             HHHHHHhc----cCCEEEEEEecCCCCCCccHHHHHHHHHHc-------CCceEEEECCCC-HHHHHHHHHHHCCCCcCE
Confidence            33444443    3345554444    9999999999888654       477888899876 54330   3457788998


Q ss_pred             EEEEeCCC
Q 018045          330 ILFFPKHS  337 (361)
Q Consensus       330 ~~~~~~g~  337 (361)
                      ++  -+|+
T Consensus        94 Vf--I~G~   99 (135)
T 2wci_A           94 LW--VDGE   99 (135)
T ss_dssp             EE--ETTE
T ss_pred             EE--ECCE
Confidence            64  4565

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=96.56  E-value=0.0051  Score=53.25  Aligned_cols=58  Identities=12%  Similarity=0.245  Sum_probs=43.7

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEEEeCCC
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ...++.|+.+||+.|+..+..|++.       ++.+-.+|++.+.  .++. +.++..++|++++  +|+
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~~-------~i~~~~~~i~~~~~~~~l~-~~~g~~~vP~~~~--~g~  228 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILGHDATIVSVR-AVSGRTTVPQVFI--GGK  228 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCCHHHHH-HHTCCSSSCEEEE--TTE
T ss_pred             cceEEEEECCCChHHHHHHHHHHHc-------CCceEEEECCCchHHHHHH-HHhCCCCcCEEEE--CCE
Confidence            4568889999999999999888764       3666677876651  3466 7889999999753  554

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=96.53  E-value=0.02  Score=49.20  Aligned_cols=42  Identities=7%  Similarity=0.139  Sum_probs=32.5

Q ss_pred             CCCcEEEEEECCCChhHHhhHHH-HHHHHHHhcC-CCeEEEEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGS-YVELADKLAG-NGVKVGKFR  309 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~-~~~la~~~~~-~~v~~~~vd  309 (361)
                      ..+..|+.|+...||+|+.+.+. +.++.+.|.+ .+|.|+..+
T Consensus        38 ~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~   81 (226)
T 3f4s_A           38 KAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRH   81 (226)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEE
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEe
Confidence            45677999999999999999996 4788878832 267777654

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=96.53  E-value=0.021  Score=49.34  Aligned_cols=97  Identities=14%  Similarity=0.184  Sum_probs=66.5

Q ss_pred             eecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          252 VTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       252 ~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      ..++.++++.++.. +..+++.+.|....|..       ..+++..+.. ..+.+..++- .+ ..++ ++|+|+++|++
T Consensus       141 ~~~~~~~l~~~~~~-~~~~~~al~f~~~~~~~-------~~~~~~d~~~~~~i~v~~~~~-~~-~~l~-~~f~v~~~Psl  209 (244)
T 3q6o_A          141 EPAXLEEIDGFFAR-NNEEYLALIFEXGGSYL-------AREVALDLSQHKGVAVRRVLN-TE-ANVV-RKFGVTDFPSC  209 (244)
T ss_dssp             SCCCHHHHHTHHHH-CCCSEEEEEEECTTCCH-------HHHHHHHTTTCTTEEEEEEET-TC-HHHH-HHHTCCCSSEE
T ss_pred             ccccHHHHHHHhhc-CCCceEEEEEEECCcch-------HHHHHHHhccCCceEEEEEeC-ch-HHHH-HHcCCCCCCeE
Confidence            34556777776652 46678888888876543       3334444443 3677776663 45 7899 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|..++. ...+.....+.+.+..+|+++
T Consensus       210 vl~~~~g~-~~~~~~~~~~r~~~~~~l~~~  238 (244)
T 3q6o_A          210 YLLFRNGS-VSRVPVLMESRSFYTAYLQRL  238 (244)
T ss_dssp             EEEETTSC-EEECCCSSSSHHHHHHHHHTC
T ss_pred             EEEeCCCC-eEeeccccccHHHHHHHHHhC
Confidence            99875543 666665566788888888765

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=96.52  E-value=0.0046  Score=44.34  Aligned_cols=56  Identities=18%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             EEEEECC----CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-----CCc---hHHHHHcCCCC-----CCCeEEEEeC
Q 018045          273 LVVLYAP----WCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-----GDQ---KEYAKQKLQLG-----SFPTILFFPK  335 (361)
Q Consensus       273 lv~F~a~----wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-----~~~---~~l~~~~~~v~-----~~Pt~~~~~~  335 (361)
                      ++.|+.+    ||+.|++++..|++.       ++.+-.+|++     .+.   .++. +..+..     ++|++++ .+
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~~-------gi~y~~idI~~~~~~~~~~~~~~l~-~~~g~~~~~~~tvP~v~i-~~   72 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTVK-------KQPFEFINIMPEKGVFDDEKIAELL-TKLGRDTQIGLTMPQVFA-PD   72 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHHT-------TCCEEEEESCSBTTBCCHHHHHHHH-HHHTCSCCTTCCSCEEEC-TT
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHHc-------CCCEEEEEeeccccccCHHHHHHHH-HHhCCCCCCCCccCEEEE-EC
Confidence            5678899    999999999888763       4677778887     441   2345 566777     8998754 35


Q ss_pred             CC
Q 018045          336 HS  337 (361)
Q Consensus       336 g~  337 (361)
                      |+
T Consensus        73 g~   74 (87)
T 1aba_A           73 GS   74 (87)
T ss_dssp             SC
T ss_pred             CE
Confidence            55

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*

Probab=96.43  E-value=0.0031  Score=61.15  Aligned_cols=107  Identities=21%  Similarity=0.175  Sum_probs=65.3

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH----HHHHHhcCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV----QALVRSKGLF   84 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~----~~~~~~~~~~   84 (361)
                      .++.+.+|||-||+++ .|+.+...++..+.+.... .+| .++++++++++|++.+++......+    ...+.....+
T Consensus       242 ~~vgv~LSGGlDSS~vaala~~~~~~v~tfti~~~~-~~E-~~~A~~vA~~lg~~h~~i~i~~~~~~~~l~~~~~~~~~~  319 (513)
T 1jgt_A          242 DTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDT-SNE-FREARAVVDHLRTRHREITIPTTELLAQLPYAVWASESV  319 (513)
T ss_dssp             CCCEEECCSSHHHHHHHHHHHHHHSSCEEEEEECSS-CCC-HHHHHHHHHHHTCEEEEEECCHHHHHTTHHHHHHHHCCC
T ss_pred             CcEEEECCCcHHHHHHHHHHHHhCCCceEEEcCCCC-CCH-HHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999877 7777765567777665532 333 5789999999999998876654322    2222211111


Q ss_pred             CCCccchhchhhccccHHHHHHH-ccCCEEEEeeeccCCc
Q 018045           85 SFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSP  123 (361)
Q Consensus        85 ~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es~  123 (361)
                           ++..-+......-+.+.. .+.+++++|.-+||-.
T Consensus       320 -----~p~~~~~~~~~~~l~~~a~~g~~VvltG~GaDElf  354 (513)
T 1jgt_A          320 -----DPDIIEYLLPLTALYRALDGPERRILTGYGADIPL  354 (513)
T ss_dssp             -----CHHHHHHHHHHHHHHHHCCSSCCEEECCTTTHHHH
T ss_pred             -----CcccchhHHHHHHHHHHHHcCCCEEEeCCChhhcc
Confidence                 010001111222333333 3667999999999964

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=96.42  E-value=0.0046  Score=46.56  Aligned_cols=49  Identities=14%  Similarity=0.268  Sum_probs=34.8

Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045          279 PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       279 ~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~  337 (361)
                      |||++|+..+..|.+.       ++.|..+|++.+ +++..   +..+..++|.+++  +|+
T Consensus        31 p~Cp~C~~ak~~L~~~-------gi~~~~~dI~~~-~~~~~~l~~~~g~~tvP~ifi--~g~   82 (109)
T 3ipz_A           31 PMCGFSNTVVQILKNL-------NVPFEDVNILEN-EMLRQGLKEYSNWPTFPQLYI--GGE   82 (109)
T ss_dssp             BSSHHHHHHHHHHHHT-------TCCCEEEEGGGC-HHHHHHHHHHHTCSSSCEEEE--TTE
T ss_pred             CCChhHHHHHHHHHHc-------CCCcEEEECCCC-HHHHHHHHHHHCCCCCCeEEE--CCE
Confidence            5999999999888774       477888888776 44330   3347789997643  554

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1

Probab=96.39  E-value=0.01  Score=57.98  Aligned_cols=107  Identities=15%  Similarity=0.239  Sum_probs=64.2

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCC--------------ceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRP--------------FRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV   74 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~--------------i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~   74 (361)
                      .++.|.+|||.||+++ .++.+...+              +..+.+.... .+| .++++++++++|++.+++.......
T Consensus       227 vpvgv~LSGGlDSS~iaala~~~~~~~~~~~~~~~a~~~~l~tfsig~~~-~~E-~~~A~~vA~~lg~~h~~i~~~~~~~  304 (553)
T 1ct9_A          227 VPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLPG-SPD-LKAAQEVANHLGTVHHEIHFTVQEG  304 (553)
T ss_dssp             SCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEESTT-CHH-HHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             CceEEeCCCCccHHHHHHHHHHhhccccccccccccccCceeEEEecCCC-CcH-HHHHHHHHHHhCCCCEEEECCHHHH
Confidence            4789999999999877 777775432              5556554432 255 5889999999999998876654322


Q ss_pred             ----HHHHHhcCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCc
Q 018045           75 ----QALVRSKGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSP  123 (361)
Q Consensus        75 ----~~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~  123 (361)
                          .+.+.....+   . .....|. ....-+.+.++  +.+++++|.-+||-.
T Consensus       305 ~~~l~~~i~~~~~~---~-~~~~~~~-~~~~~l~~~a~~~g~~vvLsG~GaDElf  354 (553)
T 1ct9_A          305 LDAIRDVIYHIETY---D-VTTIRAS-TPMYLMSRKIKAMGIKMVLSGEGSDEVF  354 (553)
T ss_dssp             HHHHHHHHHHHCCC---C-HHHHHHH-HHHHHHHHHHHHTTCCEEECCTTHHHHH
T ss_pred             HHHHHHHHHHhcCC---C-cccchHH-HHHHHHHHHHHHcCCeEEEECCCchhcc
Confidence                2333222221   1 1111111 12233444333  578999999999853

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=96.34  E-value=0.0066  Score=44.14  Aligned_cols=54  Identities=9%  Similarity=-0.022  Sum_probs=38.6

Q ss_pred             EEEEECCCChhH------HhhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcCC--CCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFC------QAMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKLQ--LGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C------~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~~--v~~~Pt~~~~~~g~  337 (361)
                      ++.|++++|+.|      +.+...|++       .++.|..+|++.+ ++    +. +.++  ...+|.+++  +|+
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~~-------~~i~~~~~di~~~-~~~~~~l~-~~~g~~~~~vP~ifi--~g~   69 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILDG-------KRIQYQLVDISQD-NALRDEMR-TLAGNPKATPPQIVN--GNH   69 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH-------TTCCCEEEETTSC-HHHHHHHH-HHTTCTTCCSCEEEE--TTE
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHHH-------CCCceEEEECCCC-HHHHHHHH-HHhCCCCCCCCEEEE--CCE
Confidence            678899999999      666665553       2578888999876 33    44 4667  679998743  554

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.34  E-value=0.008  Score=45.41  Aligned_cols=56  Identities=13%  Similarity=0.048  Sum_probs=39.0

Q ss_pred             cEEEEEECCCChhHH------hhHHHHHHHHHHhcCCCeEEEEEEcCCCchH----HHHHcC--------CCCCCCeEEE
Q 018045          271 PWLVVLYAPWCQFCQ------AMEGSYVELADKLAGNGVKVGKFRADGDQKE----YAKQKL--------QLGSFPTILF  332 (361)
Q Consensus       271 ~vlv~F~a~wC~~C~------~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~----l~~~~~--------~v~~~Pt~~~  332 (361)
                      .-++.|+.++|+.|+      .++..|++       .++.|..+|++.+ ++    +. ..+        +...+|.+++
T Consensus         8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~-------~gi~y~~vdI~~~-~~~~~~l~-~~~~~~~~~~~g~~tvP~vfi   78 (111)
T 2ct6_A            8 MVIRVFIASSSGFVAIKKKQQDVVRFLEA-------NKIEFEEVDITMS-EEQRQWMY-KNVPPEKKPTQGNPLPPQIFN   78 (111)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHH-------TTCCEEEEETTTC-HHHHHHHH-HSCCTTTCCSSSSCCSCEEEE
T ss_pred             cEEEEEEcCCCCCcccchhHHHHHHHHHH-------cCCCEEEEECCCC-HHHHHHHH-HHhcccccccCCCCCCCEEEE
Confidence            347788999999999      55555543       2588899999877 44    44 444        6677898743


Q ss_pred             EeCCC
Q 018045          333 FPKHS  337 (361)
Q Consensus       333 ~~~g~  337 (361)
                        +|+
T Consensus        79 --~g~   81 (111)
T 2ct6_A           79 --GDR   81 (111)
T ss_dssp             --TTE
T ss_pred             --CCE
Confidence              454

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=96.29  E-value=0.0054  Score=46.40  Aligned_cols=55  Identities=15%  Similarity=0.314  Sum_probs=39.4

Q ss_pred             EEEEEC-----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYA-----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a-----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~  337 (361)
                      +|.|..     +||++|+..+..|.+.       ++.|..+|++.+ +++..   +..+...+|.+++  +|+
T Consensus        18 Vvlf~kg~~~~~~Cp~C~~ak~~L~~~-------gi~y~~~di~~d-~~~~~~l~~~~g~~tvP~ifi--~g~   80 (111)
T 3zyw_A           18 CMLFMKGTPQEPRCGFSKQMVEILHKH-------NIQFSSFDIFSD-EEVRQGLKAYSSWPTYPQLYV--SGE   80 (111)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHHT-------TCCCEEEEGGGC-HHHHHHHHHHHTCCSSCEEEE--TTE
T ss_pred             EEEEEecCCCCCcchhHHHHHHHHHHc-------CCCeEEEECcCC-HHHHHHHHHHHCCCCCCEEEE--CCE
Confidence            456777     9999999999888753       467788898876 44330   2337788999754  554

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=96.22  E-value=0.042  Score=48.15  Aligned_cols=80  Identities=16%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-----------------chHHHHHcCCCCCC--Ce
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-----------------QKEYAKQKLQLGSF--PT  329 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-----------------~~~l~~~~~~v~~~--Pt  329 (361)
                      ....+..|++++|++|...+..+.+++..+   ++....++++..                 +..+. ++++..++  |.
T Consensus        42 ~~~~VelyTs~gCp~C~~Ak~lL~~~~~~~---~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~-~~~G~~tVyTPq  117 (270)
T 2axo_A           42 VKGVVELFTSQGCASCPPADEALRKMIQKG---DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYM-RALGRNGVYTPQ  117 (270)
T ss_dssp             CCCEEEEEECTTCTTCHHHHHHHHHHHHHT---SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHH-HHTTCSCCCSSE
T ss_pred             CCcEEEEEeCCCCCChHHHHHHHHHhhccC---CeeeEEEEEEEecccccccchhhhhhhHHHHHHH-HHhCCCcccCCE
Confidence            346788899999999999999999998764   353333343211                 03466 78899999  99


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +++  +|+   ....|  .+.+.|.+.|.+
T Consensus       118 I~I--ng~---~~v~G--~d~~~l~~~l~~  140 (270)
T 2axo_A          118 AIL--NGR---DHVKG--ADVRGIYDRLDA  140 (270)
T ss_dssp             EEE--TTT---EEEET--TCHHHHHHHHHH
T ss_pred             EEE--CCE---EeecC--CCHHHHHHHHHH
Confidence            766  555   22333  457788777754

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*

Probab=95.97  E-value=0.0023  Score=61.99  Aligned_cols=107  Identities=18%  Similarity=0.225  Sum_probs=64.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH----HHHhcCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA----LVRSKGLF   84 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~----~~~~~~~~   84 (361)
                      .++.+.+|||-||+++ .++.+...++..+.+.... .+| .++++++++++|++++++......+.+    .+.....+
T Consensus       239 ~~v~v~LSGGlDSs~vaala~~~~~~~~~~t~~~~~-~~E-~~~A~~vA~~lg~~h~~i~~~~~~~~~~l~~~~~~~~~~  316 (503)
T 1q15_A          239 DTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTEL-SNE-FEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIF  316 (503)
T ss_dssp             SEEEEECCSSHHHHHHHHHHTTTCSEEEEEEEEETT-BCC-HHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCC
T ss_pred             CcEEEECCCCHHHHHHHHHHHHhCCCcEEEEEeCCC-ccH-HHHHHHHHHHhCCceEEEECCHHHHHHHHHHHHHHhcCC
Confidence            4789999999999877 6777766556656554431 233 578999999999999887666532222    11111111


Q ss_pred             CCCccchhchhhccccHHHHHHH-ccCCEEEEeeeccCCc
Q 018045           85 SFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQSP  123 (361)
Q Consensus        85 ~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es~  123 (361)
                           ++..-+.......+.+.. .+.+++++|.-+||-.
T Consensus       317 -----~p~~~~~~~~~~~l~~~a~~~~~VvltG~GaDElf  351 (503)
T 1q15_A          317 -----DGLSAEIQSGLFNVYRQAQGQVSCMLTGYGSDLLF  351 (503)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHBTTBSEEECCTTHHHHH
T ss_pred             -----CcccchhHHHHHHHHHHHHCCCCEEEeCCChhhhc
Confidence                 010001111222333333 3667999999999863

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.015  Score=44.64  Aligned_cols=49  Identities=20%  Similarity=0.361  Sum_probs=34.6

Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCeE---EEEEEcCCCchHHHH---HcCCCCCCCeEEEEeCCC
Q 018045          279 PWCQFCQAMEGSYVELADKLAGNGVK---VGKFRADGDQKEYAK---QKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       279 ~wC~~C~~~~p~~~~la~~~~~~~v~---~~~vd~~~~~~~l~~---~~~~v~~~Pt~~~~~~g~  337 (361)
                      |||++|+..+..|.+.       ++.   |..+|++.+ .++..   +..+...+|.+++  +|+
T Consensus        29 p~Cp~C~~ak~lL~~~-------gv~~~~~~~~dv~~~-~~~~~~l~~~sg~~tvP~vfI--~g~   83 (121)
T 3gx8_A           29 PKCGFSRATIGLLGNQ-------GVDPAKFAAYNVLED-PELREGIKEFSEWPTIPQLYV--NKE   83 (121)
T ss_dssp             BCTTHHHHHHHHHHHH-------TBCGGGEEEEECTTC-HHHHHHHHHHHTCCSSCEEEE--TTE
T ss_pred             CCCccHHHHHHHHHHc-------CCCcceEEEEEecCC-HHHHHHHHHHhCCCCCCeEEE--CCE
Confidence            5999999999998875       244   777888776 44320   3447788999744  554

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}

Probab=95.57  E-value=0.027  Score=55.13  Aligned_cols=58  Identities=19%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHH-cCC-CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEE
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL-TGR-PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYM   67 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~-~~~-~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~   67 (361)
                      .+++|+.|||-||+++ .|+.+ .++ +|..+++-+-...++|++-...+++.+|+....+
T Consensus       301 ~~~vlglSGGiDSal~~~la~~alg~~~v~~v~mp~~~ts~~t~~~a~~la~~lg~~~~~i  361 (565)
T 4f4h_A          301 PGAIIGLSGGVDSALVLAVAVDALGAERVRAVMMPSRYTAGISTTDAADMARRVGVRYDEI  361 (565)
T ss_dssp             CCEEEECCSSHHHHHHHHHHHHHHCGGGEEEEECCCTTCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred             CcEEEecCCCccHHHHHHHHHHHhCCccEEEEeccccccccchHHHHHHHHHHhCCceeee
Confidence            6899999999999877 55544 444 4777888888889999999999999999998776

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=95.46  E-value=0.051  Score=52.67  Aligned_cols=97  Identities=11%  Similarity=0.163  Sum_probs=63.3

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      +..++.++++.++. .+..++++|.|....       .+...+++..+.. .++.+..++ +.+ .+++ ++|+|..+|+
T Consensus       140 l~~it~~~l~~~l~-~~~~~~vallF~~~~-------s~~~~~~~ldl~~~~~v~v~~v~-~~~-~~l~-~kfgV~~~Ps  208 (519)
T 3t58_A          140 LEPAKLNDIDGFFT-RNKADYLALVFERED-------SYLGREVTLDLSQYHAVAVRRVL-NTE-SDLV-NKFGVTDFPS  208 (519)
T ss_dssp             CSBCCHHHHTTGGG-SCCCSEEEEEEECTT-------CCHHHHHHHHTTTCTTEEEEEEE-TTC-HHHH-HHHTCCCSSE
T ss_pred             cCcCCHHHHHHHhc-cCCCCeEEEEecCCc-------hHHHHHHHHHhhccCCeeEEEec-Cch-HHHH-HHcCCCCCCe
Confidence            44466677777665 245678888888764       2355666666664 357776654 445 7999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +++|..+++ .............+..+|++
T Consensus       209 lvl~~~nGk-~~~~~v~~~~r~~~~~~l~~  237 (519)
T 3t58_A          209 CYLLLRNGS-VSRVPVLVESRSFYTSYLRG  237 (519)
T ss_dssp             EEEEETTSC-EEECCCSSCSHHHHHHHHTT
T ss_pred             EEEEeCCCc-eeecccccccHHHHHHHHHH
Confidence            999976654 33333322334555566554

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=94.96  E-value=0.045  Score=45.25  Aligned_cols=41  Identities=17%  Similarity=0.359  Sum_probs=34.8

Q ss_pred             CCcEEEEEECCCChhHHhhHHHH-HHHHHHhcCCCeEEEEEEc
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSY-VELADKLAGNGVKVGKFRA  310 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~-~~la~~~~~~~v~~~~vd~  310 (361)
                      .++++|.|+...||+|..+.+.+ .++.+.+.+ .+.+..+..
T Consensus        17 ~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~-~v~~~~~~l   58 (195)
T 3c7m_A           17 ADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKD-IVAFTPFHL   58 (195)
T ss_dssp             CTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTT-TCEEEEEEC
T ss_pred             CCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCC-ceEEEEEec
Confidence            56788999999999999999999 999998876 677766654

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=94.86  E-value=0.053  Score=44.78  Aligned_cols=92  Identities=10%  Similarity=0.168  Sum_probs=61.7

Q ss_pred             CCCcEEEEEE-CCCChhHH-hhHHHHHHHHHHh-cCCCeE-EEEEEcCCC---------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQ-AMEGSYVELADKL-AGNGVK-VGKFRADGD---------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~-~~~p~~~~la~~~-~~~~v~-~~~vd~~~~---------------------~~~l~~~~~  322 (361)
                      .++.++|.|| +.||+.|. ...+.|.+..+++ +..++. ++.|.+|..                     +.+++ +.|
T Consensus        42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~~V~gvS~D~~~~~~~~~~~~~~~~f~lLsD~~~~~a-~~y  120 (182)
T 1xiy_A           42 NNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDDIYCITNNDIYVLKSWFKSMDIKKIKYISDGNSSFT-DSM  120 (182)
T ss_dssp             TTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSEEEEEESSCHHHHHHHHHHTTCCSSEEEECTTSHHH-HHT
T ss_pred             CCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCCCHHHHHHHHHHcCCCCceEEEeCchHHH-HHh
Confidence            4667777777 78999999 8899999999999 655663 776665431                     14677 788


Q ss_pred             CCC-----------CCCeEEEEeCCCCCeeecCC--C---------CCCHHHHHHHHHHh
Q 018045          323 QLG-----------SFPTILFFPKHSSKPIKYPS--E---------RRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~-----------~~Pt~~~~~~g~~~~~~~~~--~---------~~~~~~l~~~i~~~  360 (361)
                      ++.           ...+.+++++|+........  +         ..+++++.+.|++.
T Consensus       121 Gv~~~~~~~G~g~~~~R~tfvIddG~V~~~~v~~~~~~~~~~~~~~~~~~~~vL~~L~~~  180 (182)
T 1xiy_A          121 NMLVDKSNFFMGMRPWRFVAIVENNILVKMFQEKDKQHNIQTDPYDISTVNNVKEFLKNN  180 (182)
T ss_dssp             TCEEECGGGTCCEEECCEEEEEETTEEEEEEECSSCCTTCSSCCCSTTSHHHHHHHHHCC
T ss_pred             CCceeccccCCCCceEEEEEEEcCCEEEEEEEeCCcccccccCcccCCCHHHHHHHHHhc
Confidence            763           24566777866643222211  1         25688888888753

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=94.17  E-value=0.1  Score=39.87  Aligned_cols=58  Identities=12%  Similarity=0.058  Sum_probs=35.7

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcC--------CCCCCCeEE
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKL--------QLGSFPTIL  331 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~--------~v~~~Pt~~  331 (361)
                      ||+.|+++.|+.|+-.... ..+...+...+|.|-.+|++.++   .++. ++.        +...+|.++
T Consensus         1 ~V~vYtt~~c~~c~~kk~c-~~aK~lL~~kgV~feEidI~~d~~~r~eM~-~~~~~~~~~~~G~~tvPQIF   69 (121)
T 1u6t_A            1 VIRVYIASSSGSTAIKKKQ-QDVLGFLEANKIGFEEKDIAANEENRKWMR-ENVPENSRPATGYPLPPQIF   69 (121)
T ss_dssp             CEEEEECTTCSCHHHHHHH-HHHHHHHHHTTCCEEEEECTTCHHHHHHHH-HHSCGGGSCSSSSCCSCEEE
T ss_pred             CEEEEecCCCCCccchHHH-HHHHHHHHHCCCceEEEECCCCHHHHHHHH-HhccccccccCCCcCCCEEE
Confidence            4778899999999532211 11222233347999999998762   2344 455        666778654

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=93.76  E-value=0.6  Score=38.93  Aligned_cols=33  Identities=21%  Similarity=0.472  Sum_probs=27.6

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEE
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKV  305 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~  305 (361)
                      .|..|+.+-||.|-...|.++++.+.+.+ ++.+
T Consensus         4 ~I~~~~D~~CP~cy~~~~~l~~l~~~~~~-~v~v   36 (208)
T 3kzq_A            4 KLYYVHDPMCSWCWGYKPTIEKLKQQLPG-VIQF   36 (208)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHSCT-TSEE
T ss_pred             EEEEEECCCCchhhhhhHHHHHHHHhCCC-CceE
Confidence            57788889999999999999999999864 3444

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=91.99  E-value=0.21  Score=37.96  Aligned_cols=66  Identities=18%  Similarity=0.330  Sum_probs=40.8

Q ss_pred             ccHHHHHhhcCCCCcEEEEEEC-----CCChhHHhhHHHHHHHHHHhcCCCe-EEEEEEcCCCchHHHH---HcCCCCCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYA-----PWCQFCQAMEGSYVELADKLAGNGV-KVGKFRADGDQKEYAK---QKLQLGSF  327 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~~~~la~~~~~~~v-~~~~vd~~~~~~~l~~---~~~~v~~~  327 (361)
                      +..+++++   ++ +| |.|..     |.|++|.+....|...       ++ .|..+|++.+ +++..   +.-+-..+
T Consensus        11 e~i~~~i~---~~-~V-vvF~Kgt~~~P~C~fc~~ak~lL~~~-------gv~~~~~~~v~~~-~~~r~~l~~~sg~~Tv   77 (118)
T 2wul_A           11 EQLDALVK---KD-KV-VVFLKGTPEQPQCGFSNAVVQILRLH-------GVRDYAAYNVLDD-PELRQGIKDYSNWPTI   77 (118)
T ss_dssp             HHHHHHHH---HS-SE-EEEESBCSSSBSSHHHHHHHHHHHHT-------TCCSCEEEETTSC-HHHHHHHHHHHTCCSS
T ss_pred             HHHHHHHh---cC-CE-EEEEcCCCCCCCCHHHHHHHHHHHHh-------CCcCeEeecccCC-HHHHHHHHHhccCCCC
Confidence            44566664   33 33 44443     6799999998877543       34 3777888777 44330   34466788


Q ss_pred             CeEEEEeCCC
Q 018045          328 PTILFFPKHS  337 (361)
Q Consensus       328 Pt~~~~~~g~  337 (361)
                      |.+++  +|+
T Consensus        78 PqIFI--~g~   85 (118)
T 2wul_A           78 PQVYL--NGE   85 (118)
T ss_dssp             CEEEE--TTE
T ss_pred             CeEeE--CCE
Confidence            98743  555

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=91.64  E-value=0.49  Score=35.89  Aligned_cols=34  Identities=6%  Similarity=0.015  Sum_probs=26.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD  313 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~  313 (361)
                      +..|+.++|+.|++....+++.       ++.|-.+|+..+
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~~-------gi~y~~~di~~~   40 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLEDH-------GIDYTFHDYKKE   40 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCEEEEEHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc-------CCcEEEEeeeCC
Confidence            6678899999999998888763       466767777543

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=90.55  E-value=0.12  Score=47.27  Aligned_cols=60  Identities=13%  Similarity=0.170  Sum_probs=35.4

Q ss_pred             EEEEECCCChhHHhhHH-HHHHHHHHhcCCCeEEEEEEcCCCc----hHHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEG-SYVELADKLAGNGVKVGKFRADGDQ----KEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p-~~~~la~~~~~~~v~~~~vd~~~~~----~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|..+||+.|++.+. .|++..-.+.  .+.++.+|-...+    ..+. +..+...+|++++  +|+
T Consensus       263 VvVYsk~~CPyC~~Ak~~LL~~~gV~y~--eidVlEld~~~~~~e~~~~L~-~~tG~~TVPqVFI--~Gk  327 (362)
T 2jad_A          263 IFVASKTYCPYSHAALNTLFEKLKVPRS--KVLVLQLNDMKEGADIQAALY-EINGQRTVPNIYI--NGK  327 (362)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTTCCCTT--TEEEEEGGGSTTHHHHHHHHH-HHHCCCSSCEEEE--TTE
T ss_pred             EEEEEcCCCcchHHHHHHHHHHcCCCcc--eEEEEEeccccCCHHHHHHHH-HHHCCCCcCEEEE--CCE
Confidence            66789999999999875 4554432222  2444433321211    2344 5568899998754  554

>1t4y_A Adaptive-response sensory-kinase SASA; alpha/beta protein, thioredoxin fold, transferase; NMR {Synechococcus elongatus} SCOP: c.47.1.15 PDB: 1t4z_A

Probab=90.42  E-value=4  Score=29.82  Aligned_cols=82  Identities=10%  Similarity=0.063  Sum_probs=64.1

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhc-CCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLA-GNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV  350 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~-~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~  350 (361)
                      ....|.|..-+.++.....+.++-+.+. +..+.+--||+.++ +.++ +.++|-.+||++=....-  .....| ..-.
T Consensus        13 L~lLyvag~tp~S~~ai~nL~~i~e~~l~~~~y~LeVIDv~eq-PeLA-E~~~IvATPTLIK~~P~P--~rriiG-d~i~   87 (105)
T 1t4y_A           13 LLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQ-PQLV-EYYRLVVTPALVKIGPGS--RQVLSG-IDLT   87 (105)
T ss_dssp             EEEEEEECSCHHHHHHHHHHHHHHHHHCCSSCEEEEEEETTTC-HHHH-HHTTCCSSSEEEEEESSS--CEEEES-SCHH
T ss_pred             hheeeEeCCCccHHHHHHHHHHHHHHhccCCceEEEEeecccC-HHHH-hHcCeeeccHhhccCCCC--ceEEeC-hHHH
Confidence            5557778888889988888888877765 44788999999999 9999 999999999999876543  344455 4556


Q ss_pred             HHHHHHHH
Q 018045          351 DSLMAFVD  358 (361)
Q Consensus       351 ~~l~~~i~  358 (361)
                      +.|..|.-
T Consensus        88 ~ql~~wwp   95 (105)
T 1t4y_A           88 DQLANQLP   95 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhH
Confidence            77777753

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=90.27  E-value=0.45  Score=39.01  Aligned_cols=41  Identities=17%  Similarity=0.127  Sum_probs=32.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHh-cCCCeEEEEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKL-AGNGVKVGKFR  309 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~-~~~~v~~~~vd  309 (361)
                      ..+.+|+.|....||+|+.+.+.+.++.+.+ .+ +|.|+.-+
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g-~v~~v~r~   54 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGED-NVTVRIRL   54 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTT-TEEEEEEE
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCC-CEEEEEEE
Confidence            4567788888999999999999998877776 44 68777655

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=90.23  E-value=0.21  Score=40.67  Aligned_cols=45  Identities=13%  Similarity=0.194  Sum_probs=35.8

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeE-EEEEEcCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVK-VGKFRADG  312 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~-~~~vd~~~  312 (361)
                      .++.+|+.|| +.||+.|....+.|.+..++++..++. ++.|.+|.
T Consensus        41 ~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D~   87 (171)
T 2xhf_A           41 RGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVND   87 (171)
T ss_dssp             TTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESSC
T ss_pred             CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            4667777777 679999999999999999998765674 77776654

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=90.08  E-value=0.65  Score=37.88  Aligned_cols=42  Identities=17%  Similarity=0.329  Sum_probs=32.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHH-HHHHHHhcC-CCeEEEEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSY-VELADKLAG-NGVKVGKFR  309 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~-~~la~~~~~-~~v~~~~vd  309 (361)
                      ..+..|+.|+...||+|..+.+.+ ..+.+.|.+ .++.+....
T Consensus        10 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~   53 (186)
T 3bci_A           10 NGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVN   53 (186)
T ss_dssp             -CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEE
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEe
Confidence            467789999999999999999998 578777753 256666544

>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}

Probab=88.55  E-value=0.54  Score=39.32  Aligned_cols=43  Identities=12%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          315 KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       315 ~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ...+ .+++|.++||++++.+|+. ...+.| ..+.+.|.+.|+++
T Consensus       166 ~~~a-~~~gv~g~Pt~~i~~~G~~-~~~~~G-~~~~~~l~~~l~~~  208 (216)
T 2in3_A          166 FQRV-AQWGISGFPALVVESGTDR-YLITTG-YRPIEALRQLLDTW  208 (216)
T ss_dssp             HHHH-HHTTCCSSSEEEEEETTEE-EEEESS-CCCHHHHHHHHHHH
T ss_pred             HHHH-HHcCCcccceEEEEECCEE-EEeccC-CCCHHHHHHHHHHH
Confidence            5667 7899999999999988872 224455 68899999998764

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=87.93  E-value=1.1  Score=37.35  Aligned_cols=43  Identities=12%  Similarity=0.039  Sum_probs=32.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHH-Hhc-CCCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELAD-KLA-GNGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~-~~~-~~~v~~~~vd~  310 (361)
                      ..+.+||.|...-||+|+.+.+.+....+ .|- ..+|.++..+.
T Consensus        14 ~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A           14 AAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence            45667889999999999999998865544 772 23788876664

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=87.63  E-value=0.45  Score=41.65  Aligned_cols=30  Identities=17%  Similarity=0.366  Sum_probs=26.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADK  297 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~  297 (361)
                      ..+.+++.|+-+.||+|+++.+.+++..+.
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~  175 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE  175 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC
Confidence            467899999999999999999999966554

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=86.60  E-value=0.56  Score=46.06  Aligned_cols=66  Identities=14%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--c----hHHHHHcCCCCCCCeE
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--Q----KEYAKQKLQLGSFPTI  330 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--~----~~l~~~~~~v~~~Pt~  330 (361)
                      +.+++++.   +.  -++.|..+||+.|+.++..|.+.       ++.+-.+|++..  .    ..+. +..+...+|.+
T Consensus         9 ~~v~~~i~---~~--~v~vy~~~~Cp~C~~~k~~L~~~-------~i~~~~~dv~~~~~~~~~~~~l~-~~~g~~tvP~v   75 (598)
T 2x8g_A            9 QWLRKTVD---SA--AVILFSKTTCPYCKKVKDVLAEA-------KIKHATIELDQLSNGSAIQKCLA-SFSKIETVPQM   75 (598)
T ss_dssp             HHHHHHHH---HC--SEEEEECTTCHHHHHHHHHHHHT-------TCCCEEEEGGGSTTHHHHHHHTH-HHHSCCCSCEE
T ss_pred             HHHHHHhc---cC--CEEEEECCCChhHHHHHHHHHHC-------CCCcEEEEcccCcchHHHHHHHH-HHhCCceeCEE
Confidence            34555554   33  37789999999999999888754       355556676642  1    2233 34578899987


Q ss_pred             EEEeCCC
Q 018045          331 LFFPKHS  337 (361)
Q Consensus       331 ~~~~~g~  337 (361)
                        |-+|+
T Consensus        76 --~i~g~   80 (598)
T 2x8g_A           76 --FVRGK   80 (598)
T ss_dssp             --EETTE
T ss_pred             --EECCE
Confidence              34554

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=85.02  E-value=1.6  Score=32.57  Aligned_cols=36  Identities=17%  Similarity=0.439  Sum_probs=29.6

Q ss_pred             CcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc
Q 018045          270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA  310 (361)
Q Consensus       270 ~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~  310 (361)
                      |.++|.|..|.|+-|......+.++    .+ ...+.+||+
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~l----ed-eY~ilrVNI   37 (124)
T 2g2q_A            2 KNVLIIFGKPYCSICENVSDAVEEL----KS-EYDILHVDI   37 (124)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHTT----TT-TEEEEEEEC
T ss_pred             CceEEEeCCCccHHHHHHHHHHHHh----hc-cccEEEEEe
Confidence            5689999999999999988888444    44 578888887

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=84.10  E-value=1.2  Score=34.25  Aligned_cols=34  Identities=12%  Similarity=0.195  Sum_probs=27.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD  313 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~  313 (361)
                      ++.|+.++|+.|+.....+++.       ++.|-.+|++.+
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~~-------gi~y~~~di~~~   36 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEEH-------EIPFVERNIFSE   36 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCEEEEETTTS
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCceEEEEccCC
Confidence            6678999999999998888762       477777888764

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=80.79  E-value=2  Score=32.47  Aligned_cols=34  Identities=12%  Similarity=0.231  Sum_probs=26.9

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD  313 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~  313 (361)
                      +..|+.|+|+.|+.....+++.       ++.|-.+|+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~~~-------gi~~~~~di~~~   35 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLNRH-------DVVFQEHNIMTS   35 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHT-------TCCEEEEETTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc-------CCCeEEEecccC
Confidence            5678899999999998777642       577888888664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1sura_	215	c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) redu	2e-43
d1zuna1	211	c.26.2.2 (A:1-211) Sulfate adenylyltransferase sub	2e-24
d2c0ga2	122	c.47.1.7 (A:1024-1145) Windbeutel, N-terminal doma	3e-11
d1g7ea_	122	c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,	4e-09
d1a8ya1	124	c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctola	7e-09
d2djja1	116	c.47.1.2 (A:6-121) Protein disulfide isomerase, PD	4e-08
d1meka_	120	c.47.1.2 (A:) Protein disulfide isomerase, PDI {Hu	4e-07
d2es7a1	119	c.47.1.20 (A:7-125) Hydrogenase-1 operon protein H	6e-07
d2trxa_	108	c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId	2e-06
d2hfda1	132	c.47.1.20 (A:1-132) Hydrogenase-1 operon protein H	3e-06
d2b5ea1	140	c.47.1.2 (A:365-504) Protein disulfide isomerase,	6e-06
d1thxa_	108	c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120	7e-06
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	4e-05
d1nw2a_	105	c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidoc	4e-04
d1nhoa_	85	c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-lik	6e-04
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	0.001

>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]} Length = 215

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PAPS reductase-like
domain: Phosphoadenylyl sulphate (PAPS) reductase
species: Escherichia coli [TaxId: 562]

 Score =  147 bits (373), Expect = 2e-43
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 14/189 (7%)

Query: 1   MDRALEKFGNDIAIAFS-GAEDVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKH 59
           +  AL+    +  ++ S G +    +   +       V   DTG L PETYRF DE+   
Sbjct: 36  VAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDK 95

Query: 60  FGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRA--WITGQ 117
             + ++             R   L+    +G ++   + KV P+ RALK L A  W  G 
Sbjct: 96  LKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGL 155

Query: 118 RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLH 177
           R++QS  +R+ +PV+ +             + K  P+ +     I+ +L+   +  + L 
Sbjct: 156 RREQSG-SRANLPVLAIQ----------RGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLW 204

Query: 178 SQGYISIGC 186
            +GY+S+G 
Sbjct: 205 DEGYLSVGD 213

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]} Length = 211

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PAPS reductase-like
domain: Sulfate adenylyltransferase subunit 2, CysD
species: Pseudomonas syringae pv. tomato [TaxId: 323]

 Score = 97.4 bits (241), Expect = 2e-24
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 17/192 (8%)

Query: 1   MDRALEKFGNDIAIAFSGAEDVALIEYAHLTG-----RPFRVFSLDTGRLNPETYRFFDE 55
           +     +F N   + +S  +D A++ +           PF V  +DT     E YRF D+
Sbjct: 19  IREVAAEFDN-PVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQ 77

Query: 56  VEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQEC--CRVRKVRPLRRALKGLRAW 113
           + +  G+ +          Q +       + + D  +     +         A  G R  
Sbjct: 78  MVEEMGLDLITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRD 137

Query: 114 ITGQRKDQSPGTRSEIPVVQVDPVFEGLEG--------GVGSLVKWNPVANVKGNDIWNF 165
               R  +           + DP  +  E           G  ++  P++N    DIW +
Sbjct: 138 EEKSRAKE-RVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQY 196

Query: 166 LRTMDVPINSLH 177
           +    +PI  L+
Sbjct: 197 IYLEGIPIVPLY 208

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 14/107 (13%), Positives = 34/107 (31%), Gaps = 10/107 (9%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG--VKVGKFRADGDQKEY 317
            +  +   R    +V          +     +   +         + +         +  
Sbjct: 10  LSFEKTVERFPYSVVKFDIASPYGEKHEA--FTAFSKSAHKATKDLLIATVGVKDYGELE 67

Query: 318 -----AKQKLQLGSFPTILFFPKHSSKPIKYPSER-RDVDSLMAFVD 358
                 + K+   +FP+I  F  ++ + ++ PS     +D+L AFV 
Sbjct: 68  NKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVS 114

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.0 bits (124), Expect = 4e-09
 Identities = 17/119 (14%), Positives = 41/119 (34%), Gaps = 13/119 (10%)

Query: 247 NSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNG---- 302
           +++  + L+        ++  + +  LV     +    +  E  +  LA+  A +     
Sbjct: 2   HTKGALPLD---TVTFYKVIPKSKFVLVKFDTQYPYGEKQDE--FKRLAENSASSDDLLV 56

Query: 303 --VKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHS-SKPIKYPSERRDVDSLMAFVD 358
             V +  +    + +   K KL   S+P    F       P+ Y      V ++  ++ 
Sbjct: 57  AEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYSGAV-KVGAIQRWLK 114

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 51.4 bits (122), Expect = 7e-09
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 260 ENLARLDHRQEPWLVVLYAPWC------QFCQAMEGSYVELADKLAGNGVKVGKFRADGD 313
           +N   +  + E   ++ + P        +  +  E      A  L   GV  G   ++ D
Sbjct: 19  KNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD 78

Query: 314 QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
                K  L      +I  F +   + I+Y  E    D+L+ F+ 
Sbjct: 79  AAVAKKLGLT--EEDSIYVFKED--EVIEYDGE-FSADTLVEFLL 118

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]} Length = 116

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

 Score = 48.7 bits (115), Expect = 4e-08
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           +  L+  YAPWC  C+A+   Y EL    A +  K     A  D           G FPT
Sbjct: 21  KDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATANDVPDEIQG-FPT 79

Query: 330 ILFFPKHS-SKPIKYPSERRDVDSLMAFVD 358
           I  +P  +  +P+ Y    R V+ L+ F+ 
Sbjct: 80  IKLYPAGAKGQPVTYSGS-RTVEDLIKFIA 108

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR 309
           +++ L +    N A      +  LV  YAPWC  C+A+   Y + A KL   G ++   +
Sbjct: 8   HVLVLRK---SNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAK 64

Query: 310 ADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
            D  ++    Q+  +  +PTI FF    +   K  +  R+ D ++ ++ 
Sbjct: 65  VDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLK 113

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.4 bits (107), Expect = 6e-07
 Identities = 15/95 (15%), Positives = 25/95 (26%), Gaps = 4/95 (4%)

Query: 266 DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLG 325
                  L+                  EL  +      +V    AD +Q E    +  + 
Sbjct: 27  RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAV--ADLEQSEAIGDRFNVR 84

Query: 326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
            FP  L F     K     S       L+  + ++
Sbjct: 85  RFPATLVFTDG--KLRGALSGIHPWAELLTLMRSI 117

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

 Score = 43.6 bits (102), Expect = 2e-06
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP 328
               LV  +A WC  C+ +     E+AD+      K+   + + DQ      K  +   P
Sbjct: 20  DGAILVDFWAEWCGPCKMIAPILDEIADE---YQGKLTVAKLNIDQNPGTAPKYGIRGIP 76

Query: 329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           T+L F     +             L  F+DA 
Sbjct: 77  TLLLFKN--GEVAATKVGALSKGQLKEFLDAN 106

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

 Score = 43.9 bits (103), Expect = 3e-06
 Identities = 10/94 (10%), Positives = 20/94 (21%), Gaps = 4/94 (4%)

Query: 267 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS 326
                 L+                  EL  +      +V     +  +    +  +    
Sbjct: 34  APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVF--R 91

Query: 327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
           FP  L F           +       L+  +  L
Sbjct: 92  FPATLVFTGG--NYRGVLNGIHPWAELINLMRGL 123

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (101), Expect = 6e-06
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)

Query: 270 EPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT 329
           +  LV+ YAPWC  C+ +  +Y ELAD  A     V   + D  + +     ++   +PT
Sbjct: 31  KDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVRGVVIE--GYPT 88

Query: 330 ILFFPK-HSSKPIKYPSERRDVDSLMAFVD 358
           I+ +P    S+ + Y    R +DSL  F+ 
Sbjct: 89  IVLYPGGKKSESVVYQGS-RSLDSLFDFIK 117

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

 Score = 42.1 bits (98), Expect = 7e-06
 Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 307
           S+ ++T+     E+   +   ++P LV  +A WC  CQ M       A+  +        
Sbjct: 1   SKGVITITDAEFESE--VLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLK---V 55

Query: 308 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVD 358
            + + D      +K ++   P +        + +         D L++F+D
Sbjct: 56  VKLEIDPNPTTVKKYKVEGVPALRLVKG--EQILDSTEGVISKDKLLSFLD 104

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 40.3 bits (93), Expect = 4e-05
 Identities = 10/110 (9%), Positives = 26/110 (23%), Gaps = 1/110 (0%)

Query: 248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGK 307
             N+  L  T +        ++E     +    C +C+   G+   +  +   +   +  
Sbjct: 5   LDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFINS 64

Query: 308 FRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV 357
                     A +                    ++  S       +  F 
Sbjct: 65  EEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINVRCDSS-MSAQEIKDFA 113

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 24/101 (23%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 319
            N  +     +P LV  +A WC  C+ M     E A+  A   V V K   + D+     
Sbjct: 8   ANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAK--LNVDENPETT 64

Query: 320 QKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL 360
            +  + S PT++ F     +P+K     +  + L A +  +
Sbjct: 65  SQFGIMSIPTLILFKGG--EPVKQLIGYQPKEQLEAQLADV 103

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 9/88 (10%)

Query: 273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILF 332
           + V  +P C +C         + +     G K+   + D         +  L + P I  
Sbjct: 5   IEVFTSPTCPYCPMAI---EVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI 61

Query: 333 FPKHSSKPIKYPSERRDVDSLMAFVDAL 360
                   +++       + L   ++  
Sbjct: 62  NGV-----VRF-VGAPSREELFEAINDE 83

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 1/84 (1%)

Query: 260 ENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK 319
           +          P +V+++  WC  C+A++  + E  +    +   V     + +++   +
Sbjct: 16  DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFV-MVNLEDEEEPKDE 74

Query: 320 QKLQLGSFPTILFFPKHSSKPIKY 343
                G +   + F   S K    
Sbjct: 75  DFSPDGGYIPRILFLDPSGKVHPE 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1sura_	215	Phosphoadenylyl sulphate (PAPS) reductase {Escheri	100.0
d1zuna1	211	Sulfate adenylyltransferase subunit 2, CysD {Pseud	99.94
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.9
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.9
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.89
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.89
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.89
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.89
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.86
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.86
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.86
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.86
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.84
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.84
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.84
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.84
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.83
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.83
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.83
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.82
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.82
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.81
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.78
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.78
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.77
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.74
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.73
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.72
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	99.72
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.69
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.66
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.66
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	99.53
d1wy5a1	216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	99.53
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.43
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.42
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.42
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.39
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.35
d1ni5a1	227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	99.33
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.3
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.3
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.29
d2c5sa1	218	Thiamine biosynthesis protein ThiI, C-terminal dom	99.27
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.27
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.26
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.23
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.19
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.15
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.14
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.04
d1k92a1	188	Argininosuccinate synthetase, N-terminal domain {E	98.92
d1vl2a1	168	Argininosuccinate synthetase, N-terminal domain {T	98.87
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.87
d1j20a1	165	Argininosuccinate synthetase, N-terminal domain {T	98.81
d1xnga1	255	NH3-dependent NAD+-synthetase {Helicobacter pylori	98.62
d1gpma1	197	GMP synthetase, central domain {Escherichia coli [	98.47
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	98.39
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.35
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	98.34
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	98.34
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	98.32
d2pg3a1	230	Queuosine biosynthesis protein QueC {Erwinia carot	98.26
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	98.24
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	98.19
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	98.11
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.1
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	98.0
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.9
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	97.88
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.88
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	97.83
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.78
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	97.73
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	97.72
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	97.71
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.66
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.58
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.56
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.54
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.53
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	97.5
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	97.34
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	97.31
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	97.3
d1a8ya2	102	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	97.23
d2d13a1	226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	97.19
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.18
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	97.18
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	97.17
d1bjxa_	110	Protein disulfide isomerase, PDI {Human (Homo sapi	97.15
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	97.05
d1kqpa_	271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	97.0
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	96.98
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.95
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	96.91
d1vbka1	132	Hypothetical protein PH1313, C-terminal domain {Ar	96.8
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	96.8
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	96.76
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	96.58
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	96.37
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	96.35
d1wxia1	274	NH3-dependent NAD+-synthetase {Escherichia coli [T	96.21
d1q15a1	296	beta-Lactam synthetase {Pectobacterium carotovorum	96.03
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	95.72
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	95.35
d1jgta1	299	beta-Lactam synthetase {Streptomyces clavuligerus	95.34
d1ct9a1	324	Asparagine synthetase B, C-terminal domain {Escher	94.59
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	90.0
d1hyua3	102	Alkyl hydroperoxide reductase subunit F (AhpF), N-	89.24
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	85.1
d1t4za_	105	Adaptive-response sensory-kinase SasA, N-terminal	84.64
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	81.2

>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PAPS reductase-like
domain: Phosphoadenylyl sulphate (PAPS) reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-48  Score=336.70  Aligned_cols=177  Identities=25%  Similarity=0.442  Sum_probs=156.8

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVR   79 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~   79 (361)
                      |+|++++|+++++|++||||||+|+ ||+.+.+++++++|+|||.+||||++|+++++++||++++++.|..........
T Consensus        36 i~~~~~~~~~~v~vs~SgGkDS~vllhl~~~~~~~~~vvf~DTg~~fpeT~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~  115 (215)
T d1sura_          36 VAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEAR  115 (215)
T ss_dssp             HHHHHHHCCSEEEEECCCCTTHHHHHHHHHHHSTTCEEEEEECSCBCHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEecCChHHHHHHHHHHhcCCCccEEEEECCcCcHHHHHHHHHHHHhcCceeeEEeccchHHHHHhh
Confidence            5799999998999999999999877 999999999999999999999999999999999999999999987654444443


Q ss_pred             hcCCCCCCccchhchhhccccHHHHHHHccCC--EEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           80 SKGLFSFYEDGHQECCRVRKVRPLRRALKGLR--AWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        80 ~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~--~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      ..+.+.......++||.++|+.|+++++++..  +|++|+|++||. .|+.++.++.+          ++.++++||++|
T Consensus       116 ~~~~~~~~~~~~~~~c~~~K~~P~~~~l~~~~~~~~i~G~Rr~Es~-~Ra~~~~~~~~----------~~~~kv~Pi~~W  184 (215)
T d1sura_         116 YGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSG-SRANLPVLAIQ----------RGVFKVLPIIDW  184 (215)
T ss_dssp             HCCGGGSHHHHHHHHHHHHTHHHHHHHHHHTTEEEEECCCCTTSSS-TTTTCCSEEEE----------TTEEEECTTTTC
T ss_pred             cCCcccCCcchhhhhhcchhccchhhhhhccCceehHHHHhhcchH-hHhcCCceeec----------CCEEEEechHhC
Confidence            33333333455689999999999999999665  699999999996 99999988876          368899999999


Q ss_pred             cHHHHHHHHHhCCCCCCccccCCCCCCCCCC
Q 018045          158 KGNDIWNFLRTMDVPINSLHSQGYISIGCEP  188 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~lY~~g~~~~GC~~  188 (361)
                      +.+|||+||+++||||||||++||+|||||+
T Consensus       185 t~~dVw~Yi~~~~lP~npLY~~Gy~siGC~h  215 (215)
T d1sura_         185 DNRTIYQYLQKHGLKYHPLWDEGYLSVGDTH  215 (215)
T ss_dssp             CHHHHHHHHHHHTCCCCGGGGGTCSCCCBCC
T ss_pred             CHHHHHHHHHHcCCCCCchhhcCCCCCCccC
Confidence            9999999999999999999999999999986

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PAPS reductase-like
domain: Sulfate adenylyltransferase subunit 2, CysD
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.94  E-value=7.6e-27  Score=199.61  Aligned_cols=171  Identities=19%  Similarity=0.246  Sum_probs=111.9

Q ss_pred             CHHHHhHhCCcEEEEecchHHHHHH-HHHHHc----CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHH
Q 018045            1 MDRALEKFGNDIAIAFSGAEDVALI-EYAHLT----GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQ   75 (361)
Q Consensus         1 i~~~~~~~~~~i~vs~SGGKDS~~l-~l~~~~----~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~   75 (361)
                      |+++++.+ ++++|||||||||++| ||+.+.    ..++.++|+|||.++|||+++++++++++|+++++..+......
T Consensus        19 ir~~~~~~-d~i~va~SGGKDS~vlL~L~~~~~~~~~~~~~~v~~d~~~~~~et~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (211)
T d1zuna1          19 IREVAAEF-DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRWKFQEMYRFRDQMVEEMGLDLITHINPDGVAQ   97 (211)
T ss_dssp             HHHHHHHC-SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSCCCHHHHHHHHHHHHTTTCCEEEECC------
T ss_pred             HHHHHHhc-CCEEEEeCCcHHHHHHHHHHHhhcccccCCeeEEEecCcccchhhHHHHHHHHHHhCCceEEeechhHHHh
Confidence            46778888 6999999999999877 888663    55688999999999999999999999999999987765443222


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHccCCEEEEeeeccCCccCccCCCceecCCCCc---------------C
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFE---------------G  140 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~---------------~  140 (361)
                      ......+.     .....++...+..+......+.+..+.+.++.++. .|.............               .
T Consensus        98 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (211)
T d1zuna1          98 GINPFTHG-----SAKHTDIMKTEGLKQALDKHGFDAAFGGARRDEEK-SRAKERVYSFRDSKHRWDPKNQRPELWNVYN  171 (211)
T ss_dssp             -------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTSSG-GGGGCCSEEEECTTCCBCGGGCCCCCSSCCC
T ss_pred             cccccccC-----cccccchhhhhhHHHHHHhhcchhhhccchhhhhh-hhhccchhhhhccccccccccccchhhcccc
Confidence            21111111     11222333333333333333556666677666664 554433332111000               0


Q ss_pred             CcCCCCCeEEEeeCccCcHHHHHHHHHhCCCCCCcccc
Q 018045          141 LEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHS  178 (361)
Q Consensus       141 ~~~~~~~~~~~~Pi~~W~~~dv~~yi~~~~lp~~~lY~  178 (361)
                      .....++.++++||++|+.+|||+|++.+||||||||.
T Consensus       172 ~~~~~~~~~ri~PI~~Wt~~DVw~yl~~~~ipy~~lY~  209 (211)
T d1zuna1         172 GNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYF  209 (211)
T ss_dssp             CCCCTTCEEEECTTTTCCHHHHHHHHHHHTCCCCSCCS
T ss_pred             ccCCCCCEEEEechhhCCHHHHHHHHHHcCCCCCCcCc
Confidence            01123568899999999999999999999999999994

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=2.5e-23  Score=161.88  Aligned_cols=107  Identities=19%  Similarity=0.500  Sum_probs=97.2

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ++.|++|+.++|+++++   +++.+||.||++||++|+.+.|.|+++++.+.+.++.|++|||+.+ .+++ .+|+|.++
T Consensus         9 ~s~v~~lt~~~f~~~i~---~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~-~~l~-~~~~v~~~   83 (119)
T d2b5ea4           9 DSAVVKLATDSFNEYIQ---SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTEN-QDLC-MEHNIPGF   83 (119)
T ss_dssp             TSSCEECCTTTHHHHHT---TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             CCccEEcCHHHHHHHHh---cCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccch-HHHH-HHhccccC
Confidence            35789999999999887   7899999999999999999999999999999765799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+.. ...|.| .++.++|++||++.
T Consensus        84 Pti~~f~~g~~~~~~~y~g-~~~~~~l~~fi~k~  116 (119)
T d2b5ea4          84 PSLKIFKNSDVNNSIDYEG-PRTAEAIVQFMIKQ  116 (119)
T ss_dssp             SEEEEEETTCTTCEEECCS-CCSHHHHHHHHHHH
T ss_pred             CeEEEEECCEEeeeEEecC-CCCHHHHHHHHHHh
Confidence            999999988653 567877 79999999999875

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.90  E-value=2.4e-23  Score=159.20  Aligned_cols=105  Identities=21%  Similarity=0.348  Sum_probs=94.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ..|.+||+++|++.+.  +.+++++|.|||+||++|+.+.|.|+++++.+.+ .+.|+.||++++ ++++ ++|+|+++|
T Consensus         2 ~~V~~lt~~~f~~~v~--~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~d~~-~~l~-~~~~I~~~P   76 (108)
T d1thxa_           2 KGVITITDAEFESEVL--KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSD-RLKVVKLEIDPN-PTTV-KKYKVEGVP   76 (108)
T ss_dssp             CSEEECCGGGHHHHTT--TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTT-TCEEEEEESTTC-HHHH-HHTTCCSSS
T ss_pred             CCceECCHHHHHHHHH--hCCCcEEEEEECCCCCCccccchHHHHHHHhcCC-cceeceeccccc-HHHH-HHhcccCCC
Confidence            4699999999998553  4788999999999999999999999999999987 799999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.| .++.++|.+||++.
T Consensus        77 t~~~~~~g~~-v~~~~G-~~~~~~l~~~i~~~  106 (108)
T d1thxa_          77 ALRLVKGEQI-LDSTEG-VISKDKLLSFLDTH  106 (108)
T ss_dssp             EEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEECCEE-EEEEeC-CCCHHHHHHHHHHh
Confidence            9999998873 445565 79999999999874

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.89  E-value=1.7e-23  Score=159.24  Aligned_cols=102  Identities=24%  Similarity=0.401  Sum_probs=93.3

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      .++||+++|+++++   ++++++|+|||+||++|+.+.|.++++++.+++ .+.|++||++.+ ++++ ++|+|.++||+
T Consensus         2 ~i~lt~~~f~~~i~---~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~vd~~~~-~~~~-~~~~V~~~Pt~   75 (105)
T d1nw2a_           2 TMTLTDANFQQAIQ---GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHAD-KVTVAKLNVDEN-PETT-SQFGIMSIPTL   75 (105)
T ss_dssp             CEEECTTTHHHHTT---SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTTC-HHHH-HHTTCCBSSEE
T ss_pred             EEEECHHHHHHHHh---CCCcEEEEEECCCCCCcccccchhhhhhhhcCC-ceEEEEEECCCC-cccH-HHCCcceeeEE
Confidence            57899999999886   889999999999999999999999999999987 899999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++|+. ...+.| ..+.++|.++|+++
T Consensus        76 ~~~~~G~~-~~~~~G-~~~~~~l~~~i~~~  103 (105)
T d1nw2a_          76 ILFKGGEP-VKQLIG-YQPKEQLEAQLADV  103 (105)
T ss_dssp             EEEETTEE-EEEEES-CCCHHHHHHHTTTT
T ss_pred             EEEECCEE-EEEEEC-CCCHHHHHHHHHHH
Confidence            99999884 445555 78999999999875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.89  E-value=2.8e-23  Score=157.77  Aligned_cols=103  Identities=22%  Similarity=0.409  Sum_probs=93.3

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeE
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~  330 (361)
                      |.+||+++|++.+.  +++++++|+|||+||++|+.+.|.++++++.+.+ .+.++.||++.+ ++++ ++|+|+++||+
T Consensus         1 v~el~d~~f~~~v~--~~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~-~~~~~~v~~d~~-~~l~-~~~~V~~~Pt~   75 (104)
T d1fb6a_           1 VQDVNDSSWKEFVL--ESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSG-KIAVYKLNTDEA-PGIA-TQYNIRSIPTV   75 (104)
T ss_dssp             CEECCTTTHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHTTCCSSSEE
T ss_pred             CeECchhhHHHHHH--cCCCcEEEEEEcCccCCccccCchhHHHHHhhcC-ccceeEEecccc-hhhh-hhcceeeeeEE
Confidence            57899999999764  4688999999999999999999999999999987 789999999999 9999 99999999999


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++|+. ...+.| ..+.+.|.+||+++
T Consensus        76 ~~~~~G~~-v~~~~G-~~~~~~l~~~i~~~  103 (104)
T d1fb6a_          76 LFFKNGER-KESIIG-AVPKSTLTDSIEKY  103 (104)
T ss_dssp             EEEETTEE-EEEEEE-CCCHHHHHHHHHHH
T ss_pred             EEEEcCeE-EEEEeC-CCCHHHHHHHHHHh
Confidence            99999874 445665 78999999999985

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=4.4e-23  Score=157.73  Aligned_cols=106  Identities=24%  Similarity=0.397  Sum_probs=94.5

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      +.+|.+||+++|++.+.  +.+++++|+|||+||++|+.+.|.+.+++..+.+ ++.++.+|++++ +.++ .+|+|.++
T Consensus         1 s~~v~~lt~~~f~~~v~--~~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~vd~d~~-~~l~-~~~~v~~~   75 (108)
T d2trxa_           1 SDKIIHLTDDSFDTDVL--KADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQN-PGTA-PKYGIRGI   75 (108)
T ss_dssp             CTTEEECCTTTHHHHTT--TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC-TTHH-HHTTCCSS
T ss_pred             CCCceECCHHHHHHHHH--hCCCcEEEEEECCCCCCccccCcHHHHHHHHhhc-ceeeeeccccch-hhHH-HHhCCCcE
Confidence            35799999999998543  4789999999999999999999999999999887 899999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+. ...+.| .++.++|.+||++.
T Consensus        76 PT~~~~~~G~~-v~~~~G-~~~~~~l~~~i~~~  106 (108)
T d2trxa_          76 PTLLLFKNGEV-AATKVG-ALSKGQLKEFLDAN  106 (108)
T ss_dssp             SEEEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEEECCEE-EEEEeC-CCCHHHHHHHHHHh
Confidence            99999999874 445665 78999999999874

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.89  E-value=7.2e-23  Score=156.24  Aligned_cols=104  Identities=21%  Similarity=0.338  Sum_probs=93.5

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      .+..+|+++|++.+.  +++++|||+|||+||++|+.+.|.+.++++.+.+ ++.|+.||++.+ ++++ ++|+|+++||
T Consensus         2 ~~~~i~~~~f~~~v~--~s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~d~~-~~l~-~~~~V~~~Pt   76 (107)
T d1dbya_           2 EAGAVNDDTFKNVVL--ESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKD-KLKCVKLNTDES-PNVA-SEYGIRSIPT   76 (107)
T ss_dssp             CCEEECHHHHHHHTT--TCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TCEEEEEETTTC-HHHH-HHHTCCSSCE
T ss_pred             CceEecHHHHHHHHH--hCCCcEEEEEECCCCCCccccChHHHHHHHhhcc-cceEEEEecccc-hhHH-HHhcccceEE
Confidence            367789999998764  4688999999999999999999999999999987 899999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| ..+.++|.++|+++
T Consensus        77 ~~~~~~G~~-v~~~~G-~~~~~~l~~~i~~~  105 (107)
T d1dbya_          77 IMVFKGGKK-CETIIG-AVPKATIVQTVEKY  105 (107)
T ss_dssp             EEEESSSSE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEECCeE-EEEEeC-CCCHHHHHHHHHHh
Confidence            999998884 455666 78999999999986

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-22  Score=156.95  Aligned_cols=106  Identities=25%  Similarity=0.590  Sum_probs=96.0

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      .+|..|+.++|+++++   +++.+||.|||+||++|+.+.|.|+++++.+.+  ..+.++.||++.+ ..++ .+|+|.+
T Consensus         7 ~~V~~l~~~~f~~~l~---~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~-~~~~i~~   81 (120)
T d1meka_           7 DHVLVLRKSNFAEALA---AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEE-SDLA-QQYGVRG   81 (120)
T ss_dssp             TTEEECCTTTHHHHHH---HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTC-CSSH-HHHTCCS
T ss_pred             CCeEEcCHHHHHHHHh---cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccc-hhHH-HHhCCcc
Confidence            4799999999999887   789999999999999999999999999999865  3699999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+.. ...|.| .++.++|.+||++.
T Consensus        82 ~Pt~~~~~~G~~~~~~~~~g-~~~~~~l~~fi~~~  115 (120)
T d1meka_          82 YPTIKFFRNGDTASPKEYTA-GREADDIVNWLKKR  115 (120)
T ss_dssp             SSEEEEEESSCSSSCEECCC-CSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCeEeeeEEecC-CCCHHHHHHHHHHh
Confidence            9999999998754 466777 79999999999874

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.86  E-value=1.8e-21  Score=152.34  Aligned_cols=104  Identities=21%  Similarity=0.264  Sum_probs=91.0

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChh------HHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQF------CQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL  322 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~------C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~  322 (361)
                      ..|.+||++||+++++   +++.++|+||||||++      |..+.+.++.+++.+.+.++.|++|||+++ .++| ++|
T Consensus        11 ~~V~~L~~~nf~~~l~---~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~-~~l~-~~~   85 (124)
T d1a8ya1          11 DRVINVNAKNYKNVFK---KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKD-AAVA-KKL   85 (124)
T ss_dssp             CCCEECCTTTHHHHHH---HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTS-HHHH-HTT
T ss_pred             CccEECCHHHHHHHHH---hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecc-cchh-hcc
Confidence            5699999999999987   7788999999999986      455556666677766655799999999999 9999 999


Q ss_pred             CCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          323 QLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       323 ~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+++||+++|++|+  .+.|.| .++.+.|++||.++
T Consensus        86 ~I~~yPTi~~f~~g~--~~~y~G-~r~~~~l~~fi~~~  120 (124)
T d1a8ya1          86 GLTEEDSIYVFKEDE--VIEYDG-EFSADTLVEFLLDV  120 (124)
T ss_dssp             TCCSTTCEEEEESSS--EEECCS-CCSHHHHHHHHHHH
T ss_pred             ccccCCcEEEeccCc--cEEeeC-CCCHHHHHHHHHHh
Confidence            999999999999987  789988 79999999999864

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.86  E-value=9.3e-22  Score=150.95  Aligned_cols=106  Identities=21%  Similarity=0.399  Sum_probs=91.8

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      +.|.+++.++|+++++ ...+++++|+||++||++|+.+.|.|+++++++.+  +.|+.||++..+++++ ++|+|+++|
T Consensus         6 g~v~~~~~d~f~~~l~-~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--v~~~~vd~~~~~~~l~-~~~~V~~~P   81 (112)
T d1f9ma_           6 GKVTEVNKDTFWPIVK-AAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQENKTLA-KELGIRVVP   81 (112)
T ss_dssp             TSEEEECTTTHHHHHH-TCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSTTHHHH-HHHCCSSSS
T ss_pred             eeeEEeCHHHHHHHHH-HcCCCEEEEEEEcCCCcchHHHHHHHhhhcccccc--ceeecccccccchhhH-hheeeccCC
Confidence            5789999999999886 23468999999999999999999999999999975  8999999986338999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      |+++|++|+. ...+.|  .+.+++.++|++.|
T Consensus        82 t~~~~k~G~~-v~~~~G--~~~~~l~e~i~~~~  111 (112)
T d1f9ma_          82 TFKILKENSV-VGEVTG--AKYDKLLEAIQAAR  111 (112)
T ss_dssp             EEEEEETTEE-EEEEES--SCHHHHHHHHHHHH
T ss_pred             EEEEEECCEE-EEEEeC--CCHHHHHHHHHHcc
Confidence            9999998884 445555  57899999998764

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.86  E-value=8.7e-22  Score=151.24  Aligned_cols=106  Identities=18%  Similarity=0.312  Sum_probs=92.2

Q ss_pred             CCceec-CcccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      ++|..+ +.++|++.+.. .+++++++|+|||+||++|+.+.|.|+++++.+++ ++.|+.||++++ ++++ ++|+|++
T Consensus         2 g~v~~i~t~~~fd~~l~~~~~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~-~~l~-~~~~v~~   78 (112)
T d1ep7a_           2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDAV-AAVA-EAAGITA   78 (112)
T ss_dssp             CSEEEECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTT-HHHH-HHHTCCB
T ss_pred             CCEEEEeCHHHHHHHHHHHhhcCCeEEEEEEcCCcCCCcccchhhhhhhhcccc-eEEEEEeecccc-cccc-ccccccC
Confidence            467888 67888877653 23579999999999999999999999999999987 799999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.|  .+.++|.+||++.
T Consensus        79 ~Pt~~~~~~G~~-v~~~~G--~~~~~l~~~i~k~  109 (112)
T d1ep7a_          79 MPTFHVYKDGVK-ADDLVG--ASQDKLKALVAKH  109 (112)
T ss_dssp             SSEEEEEETTEE-EEEEES--CCHHHHHHHHHHH
T ss_pred             CCEEEEEECCEE-EEEEeC--cCHHHHHHHHHHH
Confidence            999999999884 444555  5899999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-21  Score=146.22  Aligned_cols=102  Identities=19%  Similarity=0.356  Sum_probs=88.1

Q ss_pred             ceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |.++ +.++|+++++ ...+++++|+|||+||++|+.+.|.++++++.+++  +.|++||++++ ++++ ++|+|+++||
T Consensus         2 v~~i~s~~~f~~~l~-~~~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~d~~-~~~~-~~~~V~~~Pt   76 (105)
T d2ifqa1           2 VKQIESKTAFQEALD-AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDDC-QDVA-SECEVKCMPT   76 (105)
T ss_dssp             CEEECSHHHHHHHHH-HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTC-HHHH-HHTTCCBSSE
T ss_pred             eEEcCCHHHHHHHHH-hCCCCEEEEEEEcCCccchhhhhhhhhhhcccccc--ceeeecccccC-HhHH-HHcCceEEEE
Confidence            4566 5577888886 23578999999999999999999999999999875  78999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.|  .+.++|.++|+++
T Consensus        77 ~~~~~~G~~-v~~~~G--~~~~~l~~~i~~~  104 (105)
T d2ifqa1          77 FQFFKKGQK-VGEFSG--ANKEKLEATINEL  104 (105)
T ss_dssp             EEEEETTEE-EEEEES--CCHHHHHHHHHHH
T ss_pred             EEEEECCEE-EEEEeC--CCHHHHHHHHHhh
Confidence            999999984 444555  4789999999986

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.84  E-value=7.7e-21  Score=145.93  Aligned_cols=101  Identities=18%  Similarity=0.256  Sum_probs=87.5

Q ss_pred             Cceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCC
Q 018045          250 NLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFP  328 (361)
Q Consensus       250 ~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~P  328 (361)
                      ++.++ +.++|+++++   ++++++|+|||+||++|+.+.|.|+++++.+.+  +.|++||++++ ++++ ++|+|.++|
T Consensus         9 ~vi~i~s~~~~~~~~~---~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~~-~~l~-~~~~V~~~P   81 (113)
T d1r26a_           9 SVVDVYSVEQFRNIMS---EDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT--VKFAKVDADNN-SEIV-SKCRVLQLP   81 (113)
T ss_dssp             CCEEECCHHHHHHHHH---SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTTC-HHHH-HHTTCCSSS
T ss_pred             ceEEeCCHHHHHHHHc---CCCeEEEEEECCCCccchhhceecccccccccc--ccccccccccc-hhhH-HHccccCCC
Confidence            45666 6788999887   899999999999999999999999999999964  99999999999 9999 999999999


Q ss_pred             eEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          329 TILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       329 t~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |+++|++|+. ...+.|  .+.+.+.+.|+++
T Consensus        82 t~~~~~~G~~-v~~~~G--~~~~~l~~~l~~~  110 (113)
T d1r26a_          82 TFIIARSGKM-LGHVIG--ANPGMLRQKLRDI  110 (113)
T ss_dssp             EEEEEETTEE-EEEEES--SCHHHHHHHHHHH
T ss_pred             EEEEEECCEE-EEEEeC--CCHHHHHHHHHHH
Confidence            9999999984 334455  4678888887764

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=8.7e-21  Score=145.44  Aligned_cols=104  Identities=18%  Similarity=0.375  Sum_probs=90.0

Q ss_pred             CCceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..|.++ +.++|+..+. ..++++++|+|||+||++|+.+.|.++++++.+++ .+.++.||++++ ++++ ++|+|+++
T Consensus         5 ~~v~~i~~~~~~~~~l~-~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~~~~~i~~d~~-~~l~-~~~~V~~~   80 (111)
T d1xwaa_           5 AMVYQVKDKADLDGQLT-KASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDEC-EDIA-MEYNISSM   80 (111)
T ss_dssp             CCEEECCSHHHHHHHHH-HHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTTC-HHHH-HHTTCCSS
T ss_pred             CeEEEECCHHHHHHHHH-hcCCCEEEEEEECCcccCccccchhHHHHhhhccc-ceEEEEEEeecC-cchh-hcCCCccc
Confidence            356777 4577988775 23688999999999999999999999999999987 799999999999 9999 99999999


Q ss_pred             CeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          328 PTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       328 Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ||+++|++|+. ...+.|  .+.++|.++|++
T Consensus        81 Pt~~~~~~G~~-v~~~~G--~~~~~l~~~I~~  109 (111)
T d1xwaa_          81 PTFVFLKNGVK-VEEFAG--ANAKRLEDVIKA  109 (111)
T ss_dssp             SEEEEEETTEE-EEEEES--CCHHHHHHHHHH
T ss_pred             cEEEEEECCEE-EEEEeC--CCHHHHHHHHHh
Confidence            99999999884 455555  467899999986

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-20  Score=143.34  Aligned_cols=102  Identities=12%  Similarity=0.143  Sum_probs=88.5

Q ss_pred             ceec-CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          251 LVTL-NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       251 v~~l-~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |..+ |.++|++.+. ...+++++|+|||+||++|+.+.|.|+++++.+++  +.|++||++++ ++++ ++|+|.++||
T Consensus         3 v~~i~s~~~f~~~l~-~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~--~~f~~vd~d~~-~~l~-~~~~v~~~Pt   77 (107)
T d1gh2a_           3 VKPVGSDPDFQPELS-GAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ--AVFLEVDVHQC-QGTA-ATNNISATPT   77 (107)
T ss_dssp             EEEECSGGGHHHHHH-HTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTS-HHHH-HHTTCCSSSE
T ss_pred             eEEcCCHHHHHHHHH-hCCCCEEEEEEECCCCCCccccchhhhcccccccc--ccccccccccc-hhhh-hhcCceeceE
Confidence            4555 6789999875 33588999999999999999999999999999875  99999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.|  .+.+.|.++|++.
T Consensus        78 ~~~~~~G~~-v~~~~G--~~~~~l~~~i~k~  105 (107)
T d1gh2a_          78 FQFFRNKVR-IDQYQG--ADAVGLEEKIKQH  105 (107)
T ss_dssp             EEEEETTEE-EEEEES--SCHHHHHHHHHHH
T ss_pred             EEEEECCEE-EEEEeC--CCHHHHHHHHHHh
Confidence            999999984 444444  5899999999874

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=1.3e-20  Score=145.08  Aligned_cols=105  Identities=19%  Similarity=0.271  Sum_probs=89.6

Q ss_pred             CCceec-CcccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      +.|+.+ +.++|++.+.. .+.++++||+|||+||++|+.+.|.++++++.+++  +.|+.||++++ ++++ ++|+|++
T Consensus         6 ~~vi~i~s~~~~~~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~~~~-~~l~-~~~~V~~   81 (114)
T d1xfla_           6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--VLFLKVDTDEL-KSVA-SDWAIQA   81 (114)
T ss_dssp             SCCEEESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS--EEEEEEETTTS-HHHH-HHTTCCS
T ss_pred             CcEEEEcCHHHHHHHHHHhhccCCeEEEEEEcCCCCCccccccchhhhcccccc--cceeEEEeeec-eeec-cccceee
Confidence            456666 77888876643 34688999999999999999999999999999975  99999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+. ...+.|  .+.++|.++|++.
T Consensus        82 ~Pt~~~~~~G~~-v~~~~G--~~~~~l~~~i~k~  112 (114)
T d1xfla_          82 MPTFMFLKEGKI-LDKVVG--AKKDELQSTIAKH  112 (114)
T ss_dssp             SSEEEEEETTEE-EEEEES--CCHHHHHHHHHHH
T ss_pred             eEEEEEEECCEE-EEEEeC--cCHHHHHHHHHHh
Confidence            999999999984 444455  4789999999874

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.83  E-value=6e-21  Score=146.81  Aligned_cols=105  Identities=21%  Similarity=0.318  Sum_probs=87.6

Q ss_pred             CCceec-CcccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC
Q 018045          249 QNLVTL-NRTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS  326 (361)
Q Consensus       249 ~~v~~l-~~~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~  326 (361)
                      +.|+.+ +.++|++.++. ...++++||+|||+||++|+.+.|.|+++++.+.+  +.|+.||++.+ ++++ ++|+|++
T Consensus         4 g~vi~i~s~e~~~~~l~~~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~~-~~l~-~~~~I~~   79 (113)
T d1ti3a_           4 GQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--VTFLKVDVDEL-KAVA-EEWNVEA   79 (113)
T ss_dssp             CCEEEECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS--EEEEEEETTTC-HHHH-HHHHCSS
T ss_pred             CcEEEEeCHHHHHHHHHHHHcCCCEEEEEEEcCccccchhhhhhhhhhhccCCC--ceEEeeeeecc-cccc-ccCeecc
Confidence            456666 44566665443 34688999999999999999999999999999865  89999999999 9999 9999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +||+++|++|+  .+.+..| .+.++|.+||++.
T Consensus        80 ~Pt~~~~k~G~--~v~~~~G-~~~~~l~~~i~k~  110 (113)
T d1ti3a_          80 MPTFIFLKDGK--LVDKTVG-ADKDGLPTLVAKH  110 (113)
T ss_dssp             TTEEEEEETTE--EEEEEEC-CCTTHHHHHHHHH
T ss_pred             cceEEEEECCE--EEEEEcC-CCHHHHHHHHHHH
Confidence            99999999998  4444443 5789999999874

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.83  E-value=8.6e-21  Score=143.45  Aligned_cols=96  Identities=19%  Similarity=0.328  Sum_probs=86.1

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      +.++|+++++   ++++++|+|||+||++|+.+.|.++++++.+++  +.|+++|++++ ++++ ++|+|.++||+++|+
T Consensus         7 s~~~f~~~i~---~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~vd~d~~-~~~~-~~~~V~~~Pt~i~~k   79 (103)
T d1syra_           7 SQAEFDSIIS---QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDEV-SEVT-EKENITSMPTFKVYK   79 (103)
T ss_dssp             SHHHHHHHHH---HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTTT-HHHH-HHTTCCSSSEEEEEE
T ss_pred             CHHHHHHHHh---CCCcEEEEEeCCcccCcccccccchhhhhcccc--eEEEeeccccC-ccee-eeeeeecceEEEEEE
Confidence            6688999887   789999999999999999999999999999965  78999999999 9999 999999999999999


Q ss_pred             CCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          335 KHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|+. ...+.|  .+.++|.++|++.
T Consensus        80 ~G~~-v~~~~G--~~~~~l~~~i~k~  102 (103)
T d1syra_          80 NGSS-VDTLLG--ANDSALKQLIEKY  102 (103)
T ss_dssp             TTEE-EEEEES--CCHHHHHHHHHTT
T ss_pred             CCEE-EEEEeC--cCHHHHHHHHHhh
Confidence            9884 445555  4789999999975

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=5e-21  Score=153.15  Aligned_cols=105  Identities=26%  Similarity=0.588  Sum_probs=89.7

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCCchHHHHHcCCCC
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGDQKEYAKQKLQLG  325 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~~~~l~~~~~~v~  325 (361)
                      .+.|.+|+.++|++++.  +.+++|||.||||||++|+.+.|.|+++++.+++  ..+.++.+|++   .+++ ++|+|.
T Consensus        11 ~~~V~~l~~~nf~~~v~--~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~---~~~~-~~~~v~   84 (140)
T d2b5ea1          11 DSSVFQLVGKNHDEIVN--DPKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHT---ENDV-RGVVIE   84 (140)
T ss_dssp             SCSEEEECTTTHHHHHH--CTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGG---GCCC-SSCCCS
T ss_pred             CCCcEEecCcCHHHHHh--cCCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeeecc---chhc-cccccc
Confidence            35799999999999875  4678999999999999999999999999999875  25677777665   4578 899999


Q ss_pred             CCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 018045          326 SFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++||+++|++|+.. .+.|.| .++.+.|.+||++
T Consensus        85 ~~Ptl~~f~~g~~~~~~~y~G-~~t~~~l~~fi~~  118 (140)
T d2b5ea1          85 GYPTIVLYPGGKKSESVVYQG-SRSLDSLFDFIKE  118 (140)
T ss_dssp             SSSEEEEECCTTSCCCCBCCS-CCCHHHHHHHHHH
T ss_pred             cCCeEEEEECCEEcceeEeCC-CCCHHHHHHHHHH
Confidence            99999999988753 566877 6999999999986

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=4.3e-20  Score=143.90  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=88.4

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEcCCC----chHHHHHcCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRADGD----QKEYAKQKLQ  323 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~~~~----~~~l~~~~~~  323 (361)
                      .+++|+++||++++.   +++.+||.||||||++|+  .|+|+++++.+..  ..+.+++|||+..    +.+++ ++|+
T Consensus         3 g~v~L~~~nFd~~v~---~~~~~lV~Fya~wC~~ck--~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~-~~~~   76 (122)
T d2c0ga2           3 GCVDLDELSFEKTVE---RFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALG-DRYK   76 (122)
T ss_dssp             TCEECCTTTHHHHHT---TSSEEEEEEEESSCCSHH--HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHH-HHTT
T ss_pred             ceEEcChHhHHHHHh---cCCcEEEEEECCCCCccc--CHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHH-HHhh
Confidence            478999999999997   789999999999999999  4999999998754  4799999999642    28999 9998


Q ss_pred             C--CCCCeEEEEeCCCCCee--ecCCCCCCHHHHHHHHHH
Q 018045          324 L--GSFPTILFFPKHSSKPI--KYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       324 v--~~~Pt~~~~~~g~~~~~--~~~~~~~~~~~l~~~i~~  359 (361)
                      |  +++||+++|++|+....  .+.| .++.++|.+||++
T Consensus        77 i~~~~~PTi~~f~~g~~~~~~~~~~g-~rt~~~l~~fv~~  115 (122)
T d2c0ga2          77 VDDKNFPSIFLFKGNADEYVQLPSHV-DVTLDNLKAFVSA  115 (122)
T ss_dssp             CCTTSCCEEEEESSSSSSEEECCTTS-CCCHHHHHHHHHH
T ss_pred             cccCCCCcEEEEeCCcccccccccCC-CCCHHHHHHHHHH
Confidence            8  58999999998876543  4555 7999999999986

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.82  E-value=4.7e-21  Score=148.24  Aligned_cols=103  Identities=25%  Similarity=0.531  Sum_probs=85.2

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC----CeEEEEEEcCCCchHHHHHcCCC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN----GVKVGKFRADGDQKEYAKQKLQL  324 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~----~v~~~~vd~~~~~~~l~~~~~~v  324 (361)
                      +.|..|+.+||++++.  ++++++||.|||+||++|++|.|.|+++++.+.+.    .+.+...|++    .++ .+++|
T Consensus         2 g~V~~lt~~nF~~~v~--~~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~----~~~-~~~~v   74 (116)
T d2djja1           2 GPVTVVVAKNYNEIVL--DDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT----AND-VPDEI   74 (116)
T ss_dssp             CSSEECCTTTTTTSSS--CTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT----TSC-CSSCC
T ss_pred             cCcEEcccCCHHHHHh--cCCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc----hhh-hcccc
Confidence            5799999999998763  47899999999999999999999999999999762    2344444444    446 68999


Q ss_pred             CCCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 018045          325 GSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       325 ~~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~  359 (361)
                      .++||+++|++|+.. ...|.| .++.++|.+||++
T Consensus        75 ~~~Pti~~f~~g~~~~~~~~~g-~~~~~~l~~fi~~  109 (116)
T d2djja1          75 QGFPTIKLYPAGAKGQPVTYSG-SRTVEDLIKFIAE  109 (116)
T ss_dssp             SSSSEEEEECSSCTTSCCCCCC-CSCHHHHHHHHHH
T ss_pred             cCCCEEEEEECCccCceEEecC-CCCHHHHHHHHHH
Confidence            999999999888653 567777 7999999999986

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.5e-20  Score=145.93  Aligned_cols=102  Identities=12%  Similarity=0.178  Sum_probs=86.2

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      +..+|++++. ..++++|+|.|||+||++|+.|.|.++++++.+++ .+.|++||++++ ++++ ++|+|+++||+++|+
T Consensus         9 s~~~~dq~i~-~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~-~v~~~~VDvd~~-~~la-~~~~I~~~PT~~~f~   84 (137)
T d1qgva_           9 NGWQVDQAIL-SEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKN-FAVIYLVDITEV-PDFN-KMYELYDPCTVMFFF   84 (137)
T ss_dssp             SHHHHHHHHH-TCSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTT-TEEEEEEETTTC-CTTT-TSSCSCSSCEEEEEE
T ss_pred             CHHHHHHHHH-hCCCCEEEEEEECCCCccchhcChHHHHHHHHhhc-cceEEEeecccc-chhh-hhcCeeeEEEEEEEe
Confidence            5568998886 34578999999999999999999999999999987 799999999999 9999 999999999999999


Q ss_pred             CCCCCeeecC--------CCCCCHHHHHHHHHHh
Q 018045          335 KHSSKPIKYP--------SERRDVDSLMAFVDAL  360 (361)
Q Consensus       335 ~g~~~~~~~~--------~~~~~~~~l~~~i~~~  360 (361)
                      +|+.....+.        +...+.+++++.|+.+
T Consensus        85 ~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i  118 (137)
T d1qgva_          85 RNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETV  118 (137)
T ss_dssp             TTEEEEEECC------CCSCCSCHHHHHHHHHHH
T ss_pred             CCcEEEEEecCCCcceeeeehhhhHHHHHHHHHH
Confidence            9985332332        1234788888888764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.78  E-value=9e-20  Score=140.93  Aligned_cols=106  Identities=8%  Similarity=0.087  Sum_probs=80.2

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      ....++..+|++++. ...+++|++.|+|+||++|+.+.|.|+++++.+.+.++.++.||++.+ ++++ ++|+|+++||
T Consensus        12 g~~~v~~~~ld~~~~-~~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d~~-~~l~-~~~~V~~~Pt   88 (119)
T d2es7a1          12 GWQPVEASTVDDWIK-RVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQS-EAIG-DRFNVRRFPA   88 (119)
T ss_dssp             TCEECCCC---------CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHHHH-HHHH-HTTTCCSSSE
T ss_pred             CCceecccCHHHHHH-hCCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECCCC-HHHH-HhcCcCcceE
Confidence            456788899998876 345778999999999999999999999999999875799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. .-.+.| ..+.+++.++|+++
T Consensus        89 ~~~~~~G~~-v~~~~G-~~~~~~l~~~i~~l  117 (119)
T d2es7a1          89 TLVFTDGKL-RGALSG-IHPWAELLTLMRSI  117 (119)
T ss_dssp             EEEESCC-----CEES-CCCHHHHHHHHHHH
T ss_pred             EEEEEcCeE-EEEeeC-CCCHHHHHHHHHHH
Confidence            999999884 344444 79999999999875

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.78  E-value=6.7e-19  Score=133.84  Aligned_cols=100  Identities=11%  Similarity=0.153  Sum_probs=82.2

Q ss_pred             cCcccHHHHHhhcCCCCcE-EEEEECCCChhHHhhHHHHHHHHHHhcC---CCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          254 LNRTGMENLARLDHRQEPW-LVVLYAPWCQFCQAMEGSYVELADKLAG---NGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       254 l~~~~f~~~~~~~~~~~~v-lv~F~a~wC~~C~~~~p~~~~la~~~~~---~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      |+++.++.+.+   .++++ ++.|||+||++|+.+.|.+++++.....   ..|.+..+|++++ ++++ ++|+|.++||
T Consensus         2 l~~~~~e~~~~---~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~-~~l~-~~~~V~~vPT   76 (107)
T d1a8la2           2 LMDETKQAIRN---IDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEY-PEWA-DQYNVMAVPK   76 (107)
T ss_dssp             CCHHHHHHHTT---CCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGC-HHHH-HHTTCCSSCE
T ss_pred             CCHHHHHHHHh---cCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEeccccc-cccc-cccccccceE
Confidence            56666666554   55655 5569999999999999999999876332   3799999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++++++|+. ...+.| ..+.+.|.++|++.
T Consensus        77 i~i~~~G~~-~~~~~G-~~~~~~~~~~i~~a  105 (107)
T d1a8la2          77 IVIQVNGED-RVEFEG-AYPEKMFLEKLLSA  105 (107)
T ss_dssp             EEEEETTEE-EEEEES-CCCHHHHHHHHHHH
T ss_pred             EEEEeCCeE-EEEEEC-CCCHHHHHHHHHHh
Confidence            999999884 445555 79999999999864

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=6.3e-20  Score=144.24  Aligned_cols=106  Identities=9%  Similarity=0.058  Sum_probs=92.6

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCe
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPT  329 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt  329 (361)
                      ....++.++|++++. ...+++|+|.|||+||++|+.+.|.|+++++.+.+..+.+++||++.+ ++++ ++|+|.++||
T Consensus        18 g~~~~~~~~~d~~~~-~~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~-~~la-~~~~V~~~PT   94 (132)
T d2hfda1          18 GWTPVSESRLDDWLT-QAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-EAIG-DRFGVFRFPA   94 (132)
T ss_dssp             TCEEECHHHHHHHHH-HCSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHH-HHHH-HHHTCCSCCE
T ss_pred             CCcccccccHHHHHH-hCCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEecCC-HHHH-HhhccCccee
Confidence            456788999999876 344678999999999999999999999999999875578999999999 9999 9999999999


Q ss_pred             EEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          330 ILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       330 ~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++|++|+. ...+.| .++.++|.++|+++
T Consensus        95 ~~~~~~G~~-v~~~~G-~~~~~~l~~~i~~l  123 (132)
T d2hfda1          95 TLVFTGGNY-RGVLNG-IHPWAELINLMRGL  123 (132)
T ss_dssp             EEEEETTEE-EEEECC-CSCHHHHHHHHHHH
T ss_pred             EEEEEcCcE-eeeecC-CCCHHHHHHHHHHH
Confidence            999999983 344444 89999999999875

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.74  E-value=6.1e-19  Score=128.23  Aligned_cols=83  Identities=16%  Similarity=0.269  Sum_probs=74.8

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR  348 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~  348 (361)
                      +|..+++|||+||++|+.+.|.++++++.+++ .+.+..+|++.+ ++++ ++|+|.++||++++++|+     +.| ..
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~d~~-~~la-~~~~V~~~Pt~~i~~~g~-----~~G-~~   72 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVMEN-PQKA-MEYGIMAVPTIVINGDVE-----FIG-AP   72 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSSS-CCTT-TSTTTCCSSEEEETTEEE-----CCS-SS
T ss_pred             CceEEEEEECCCCcChHhhhhhcccccccccc-cccccccccccc-cccc-ccCCceEeeEEEEECCcE-----EEC-CC
Confidence            57789999999999999999999999999987 799999999999 9999 999999999999887664     345 68


Q ss_pred             CHHHHHHHHHHh
Q 018045          349 DVDSLMAFVDAL  360 (361)
Q Consensus       349 ~~~~l~~~i~~~  360 (361)
                      +.++|.++|++.
T Consensus        73 ~~~~l~~~i~~~   84 (85)
T d1fo5a_          73 TKEALVEAIKKR   84 (85)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            899999999874

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.1e-18  Score=131.61  Aligned_cols=102  Identities=11%  Similarity=0.227  Sum_probs=82.5

Q ss_pred             ceecCcccHHHHHhhcCCCCcEEEEEECC-------CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcC-------CCchH
Q 018045          251 LVTLNRTGMENLARLDHRQEPWLVVLYAP-------WCQFCQAMEGSYVELADKLAGNGVKVGKFRAD-------GDQKE  316 (361)
Q Consensus       251 v~~l~~~~f~~~~~~~~~~~~vlv~F~a~-------wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~-------~~~~~  316 (361)
                      |...+.++|++++. ..++++++|+|||+       ||++|+.+.|.++++++.+++ ++.|+.||++       .+ ..
T Consensus         4 i~v~~~~e~~~~l~-~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~-~~~~~~vdv~~~~~~~d~~-~~   80 (119)
T d1woua_           4 VSVSGFEEFHRAVE-QHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVGEKPYWKDPN-ND   80 (119)
T ss_dssp             EEEESHHHHHHHHH-TTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECCCHHHHHCTT-CH
T ss_pred             EEeCCHHHHHHHHH-HcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCC-ceEEEEEECCCCcccchhh-hh
Confidence            34456677877775 34577999999995       999999999999999999987 7999999984       44 67


Q ss_pred             HHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          317 YAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       317 l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++ ++|+|.++||+++|++|++ .....+  .+.+.+.+|+++
T Consensus        81 l~-~~~~V~~iPT~i~~~~g~~-l~~~~~--~~~~ll~~~~~e  119 (119)
T d1woua_          81 FR-KNLKVTAVPTLLKYGTPQK-LVESEC--LQANLVEMLFSE  119 (119)
T ss_dssp             HH-HHHCCCSSSEEEETTSSCE-EEGGGG--GCHHHHHHHHHC
T ss_pred             HH-HhCCeEEEEEEEEEECCeE-Eeeeec--CCHHHHHHHhcC
Confidence            88 8999999999999998884 444443  677888888763

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.72  E-value=1.3e-17  Score=128.31  Aligned_cols=102  Identities=8%  Similarity=0.200  Sum_probs=82.3

Q ss_pred             CceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCC
Q 018045          250 NLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGS  326 (361)
Q Consensus       250 ~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~  326 (361)
                      .+..++.+.+++.+.   ++++++|+||++||++|+.+.|.|+++++.++. .+.++.+|...+.   .+++ ++|+|.+
T Consensus        10 ~~~~~t~~~~~~~i~---~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~-~v~~v~~~~~~~~~~~~~~~-~~~~V~~   84 (115)
T d1zmaa1          10 DLEVTTVVRAQEALD---KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-HIYFINSEEPSQLNDLQAFR-SRYGIPT   84 (115)
T ss_dssp             TSEECCHHHHHHHHH---TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-CCEEEETTCGGGHHHHHHHH-HHHTCCS
T ss_pred             eeeeCCHHHHHHHHh---cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh-hhhhheeecccccccccccc-ccccccc
Confidence            456667777777776   899999999999999999999999999999976 5666544433221   3677 8999999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHH
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVD  358 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~  358 (361)
                      +||+++|++|+. ...+.| ..+.++|.+||.
T Consensus        85 ~PTli~~~~gk~-~~~~~G-~~~~~el~~fla  114 (115)
T d1zmaa1          85 VPGFVHITDGQI-NVRCDS-SMSAQEIKDFAG  114 (115)
T ss_dssp             SCEEEEEETTEE-EEECCT-TCCHHHHHHHHT
T ss_pred             ccEEEEEECCEE-EEEEcC-CCCHHHHHHHHc
Confidence            999999999984 555665 799999999984

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=9.2e-18  Score=130.46  Aligned_cols=104  Identities=14%  Similarity=0.279  Sum_probs=86.3

Q ss_pred             CCCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CC-----eEEEEEEcCCCchHHHHHc
Q 018045          248 SQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NG-----VKVGKFRADGDQKEYAKQK  321 (361)
Q Consensus       248 ~~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~-----v~~~~vd~~~~~~~l~~~~  321 (361)
                      ...+++||++||++++.   +++.+||.||+|||..|..  |.++++++.+.+ .+     |.++.+|++.+ ++++ .+
T Consensus         3 ~~~~v~L~~~nFd~~i~---~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n-~~l~-~~   75 (122)
T d1g7ea_           3 TKGALPLDTVTFYKVIP---KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGISDYGDKLN-MELS-EK   75 (122)
T ss_dssp             CSSSCSCSHHHHHHHGG---GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEESCCTTSCHH-HHHH-HH
T ss_pred             CCceEECCHHhHHHHHh---hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccceeecccccc-HHHH-Hh
Confidence            45689999999999997   8899999999999988864  899999999876 23     34445567777 8899 66


Q ss_pred             C--CCCCCCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHH
Q 018045          322 L--QLGSFPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       322 ~--~v~~~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +  +|+++||+++|++|+.. ++.|.| .++.++|.+||++
T Consensus        76 ~~~~I~~yPTi~~f~~G~~~~~~~y~G-~rt~~~l~~fi~~  115 (122)
T d1g7ea_          76 YKLDKESYPVFYLFRDGDFENPVPYSG-AVKVGAIQRWLKG  115 (122)
T ss_dssp             HTCSSSSCEEEEEEESSCCCCCEEEES-CCCHHHHHHHHHT
T ss_pred             hcccccCCCeEEEEecCcccCceecCC-CCCHHHHHHHHHh
Confidence            4  68899999999998753 678888 7999999999986

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=1.2e-17  Score=121.12  Aligned_cols=80  Identities=18%  Similarity=0.287  Sum_probs=70.3

Q ss_pred             EEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHH
Q 018045          272 WLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVD  351 (361)
Q Consensus       272 vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~  351 (361)
                      .++.||||||++|+.+.|.|+++++.+++ ++.|+.+|++++ ++++ ++|+|.++||+++  +|+   ..+.| ..+.+
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~-~v~~~~vd~d~~-~~l~-~~~~V~~~Pt~~~--~~~---~~~~G-~~~~~   74 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMVD-REKA-IEYGLMAVPAIAI--NGV---VRFVG-APSRE   74 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTTC-GGGG-GGTCSSCSSEEEE--TTT---EEEEC-SSCCH
T ss_pred             EEEEEECCCCcchHHHHHHHhhhcccccc-cccccccccccc-hhhH-HhcCceEeCEEEE--CCc---EEEEc-CCCHH
Confidence            46679999999999999999999999987 899999999999 9999 9999999999877  343   23455 68999


Q ss_pred             HHHHHHHHh
Q 018045          352 SLMAFVDAL  360 (361)
Q Consensus       352 ~l~~~i~~~  360 (361)
                      .|.++|++.
T Consensus        75 ~l~~~i~~~   83 (85)
T d1nhoa_          75 ELFEAINDE   83 (85)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999874

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3.3e-16  Score=120.67  Aligned_cols=100  Identities=20%  Similarity=0.392  Sum_probs=75.4

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCC
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFP  328 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~P  328 (361)
                      +.++++..+. ..+++++||+|||+||++|+.|.|.+   .++.+.+.  ++.++.+|++.+.   .+++ ++|+|.++|
T Consensus         9 ~~~~~~~~l~-~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~-~~~~v~~~P   84 (117)
T d2fwha1           9 TVDELNQALV-EAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTANDAQDVALL-KHLNVLGLP   84 (117)
T ss_dssp             SHHHHHHHHH-HHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTTCCHHHHHHH-HHTTCCSSS
T ss_pred             CHHHHHHHHH-HcCCCeEEEEEecccCCcccccchhHHhHHHHHHhcc--ceEEEecccccchhHHHHHH-hhhehhhce
Confidence            3456666654 23588999999999999999999998   45555554  4788888876542   5788 899999999


Q ss_pred             eEEEEe-CCCCCee-ecCCCCCCHHHHHHHHHH
Q 018045          329 TILFFP-KHSSKPI-KYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       329 t~~~~~-~g~~~~~-~~~~~~~~~~~l~~~i~~  359 (361)
                      |+++|+ +|+.... .+.| .+++++|.++|++
T Consensus        85 t~~~~~~~G~~~~~~~~~G-~~~~~~~~~~l~~  116 (117)
T d2fwha1          85 TILFFDGQGQEHPQARVTG-FMDAETFSAHLRD  116 (117)
T ss_dssp             EEEEECTTSCBCGGGCBCS-CCCHHHHHHHHHH
T ss_pred             EEEEEeCCCcEEecccccc-cCCHHHHHHHHhc
Confidence            999995 5553222 2344 7999999999975

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.66  E-value=2e-16  Score=117.19  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=69.5

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERR  348 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~  348 (361)
                      +...++.|+++||++|+.+.|.++++++.+.  ++.|..||++.+ ++++ ++|+|.++||+++  +|+  .+ +.| .+
T Consensus        15 ~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~--~i~~~~vd~~~~-~~l~-~~~~I~~vPt~~~--ng~--~~-~~G-~~   84 (96)
T d1hyua4          15 GDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGGTF-QNEI-TERNVMGVPAVFV--NGK--EF-GQG-RM   84 (96)
T ss_dssp             SCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETTTC-HHHH-HHTTCCSSSEEEE--TTE--EE-EES-CC
T ss_pred             CCeEEEEEECCCCcchHHHHHHHHHHHHhCC--ceEEEEEecccc-hHHH-hhcccccccEEEE--CCE--EE-Eec-CC
Confidence            4567888999999999999999999998865  599999999999 9999 9999999999855  666  33 555 78


Q ss_pred             CHHHHHHHHH
Q 018045          349 DVDSLMAFVD  358 (361)
Q Consensus       349 ~~~~l~~~i~  358 (361)
                      +.++|+++|+
T Consensus        85 ~~~~l~~~le   94 (96)
T d1hyua4          85 TLTEIVAKVD   94 (96)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHHh
Confidence            9999999885

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=3.4e-15  Score=127.19  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=87.9

Q ss_pred             CCceecC-cccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCC
Q 018045          249 QNLVTLN-RTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSF  327 (361)
Q Consensus       249 ~~v~~l~-~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~  327 (361)
                      ..|.+|+ .++|.+.+....++..|+|+||++||++|+.|.|.|..||..|.+  +.|++||++.. + +. .+|+|.++
T Consensus        99 G~v~~i~~~~~f~~~v~~~~~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~--vkF~ki~~~~~-~-~~-~~~~i~~l  173 (217)
T d2trcp_          99 GFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM--VKFCKIRASNT-G-AG-DRFSSDVL  173 (217)
T ss_dssp             CSEEECCSHHHHHHHHHHSCTTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT--SEEEEEEHHHH-T-CS-TTSCGGGC
T ss_pred             CeEEEcCCHHHHHHHHHhcCCCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc--ceEEEEccccc-h-hH-HhCCCCCC
Confidence            5688896 578988887555677899999999999999999999999999975  99999999866 4 56 79999999


Q ss_pred             CeEEEEeCCCCC-----eeecCCCCCCHHHHHHHHHHh
Q 018045          328 PTILFFPKHSSK-----PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       328 Pt~~~~~~g~~~-----~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ||+++|++|+..     +....|...+.++|..||.+.
T Consensus       174 Ptl~~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~  211 (217)
T d2trcp_         174 PTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEY  211 (217)
T ss_dssp             SEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTT
T ss_pred             CeEEEEECCEEEEEEECccccccccCCHHHHHHHHHHc
Confidence            999999999842     112233456889999998753

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.53  E-value=2.3e-15  Score=128.40  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=104.5

Q ss_pred             CCcEEEEecchHHHHHH-HHHHHcC-----CCceEEEccCCCC--cHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHh
Q 018045            9 GNDIAIAFSGAEDVALI-EYAHLTG-----RPFRVFSLDTGRL--NPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRS   80 (361)
Q Consensus         9 ~~~i~vs~SGGKDS~~l-~l~~~~~-----~~i~v~~~dtg~~--~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~   80 (361)
                      +++|+||+|||+||++| |++.+..     ..+.++++|+|..  ..+..++++++++.+|+++.+...+.....   ..
T Consensus        24 ~~kv~Va~SGG~DS~~Ll~lL~~~~~~~~~~~i~~~~vdh~~r~~s~~~~~~~~~~~~~l~i~~~i~~~~~~~~~---~~  100 (216)
T d1wy5a1          24 ERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLRESAERDEEFCKEFAKERNMKIFVGKEDVRAFA---KE  100 (216)
T ss_dssp             CCEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSSTHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH---HH
T ss_pred             CCeEEEEeCCcHHHHHHHHHHHHHHHhcCCCcEEEEEeecccccchhhhhhHHHHHHHhhhhhhhhhccchhhhc---cC
Confidence            46899999999999877 8887742     2477889999953  235567899999999999988765543221   11


Q ss_pred             cCCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcC-CCCCeEEEeeCccC
Q 018045           81 KGLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEG-GVGSLVKWNPVANV  157 (361)
Q Consensus        81 ~~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~-~~~~~~~~~Pi~~W  157 (361)
                      .      ......||+..+..-+.++.+  +.++++||+.+||.. .-..+..+.... ..+..+ .......++||+++
T Consensus       101 ~------~~~~~~~~R~~Ry~~l~~~a~~~~~~~ia~GH~~dD~~-Et~l~~l~rg~~-~~~l~~~~~~~~~i~RPLl~~  172 (216)
T d1wy5a1         101 N------RMSLEEAGRFLRYKFLKEILESEGFDCIATAHHLNDLL-ETSLLFFTRGTG-LDGLIGFLPKEEVIRRPLYYV  172 (216)
T ss_dssp             T------TCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCHHHHH-HHHHHHHHHCCC-HHHHHCSCSEETTEECTTTTC
T ss_pred             C------ccchHHHHHHHHHHHhhhhccccccceeEeeeeccchH-HHHHHHhhcCCc-cccccCCCcccceecchhhcC
Confidence            1      124567888777777777776  678999999999853 221111111000 000000 00112247999999


Q ss_pred             cHHHHHHHHHhCCCCCCc
Q 018045          158 KGNDIWNFLRTMDVPINS  175 (361)
Q Consensus       158 ~~~dv~~yi~~~~lp~~~  175 (361)
                      +++||..|.+.+||||-.
T Consensus       173 ~k~eI~~~a~~~~l~~~~  190 (216)
T d1wy5a1         173 KRSEIEEYAKFKGLRWVE  190 (216)
T ss_dssp             CHHHHHHHHHHTTCCCCC
T ss_pred             CHHHHHHHHHHcCCcEEE
Confidence            999999999999999843

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.43  E-value=3.2e-13  Score=107.27  Aligned_cols=91  Identities=16%  Similarity=0.300  Sum_probs=73.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~~  320 (361)
                      ++|+++|+|||+||++|+...|.+.++.++++..++.++.|..+..                           +..++ +
T Consensus        22 ~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~  100 (143)
T d2fy6a1          22 KDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLNYPKLPVVTDNGGTIA-Q  100 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEEECTTCHHH-H
T ss_pred             CCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccccchhhhhhhhhhcCCcccccccccchHHH-H
Confidence            6899999999999999999999999999998876788887775321                           14678 8


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .|++.++|++++++..++....+.| ..+.+++.++|+++
T Consensus       101 ~~~v~~~P~~~liD~~G~i~~~~~G-~~~~~~~~~~l~~~  139 (143)
T d2fy6a1         101 SLNISVYPSWALIGKDGDVQRIVKG-SINEAQALALIRDP  139 (143)
T ss_dssp             HTTCCSSSEEEEECTTSCEEEEEES-CCCHHHHHHHHHCT
T ss_pred             HcCCCccCEEEEECCCCEEEEEEEC-CCCHHHHHHHHHHH
Confidence            9999999999999544433444555 78999999999875

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=4.7e-13  Score=105.13  Aligned_cols=90  Identities=21%  Similarity=0.401  Sum_probs=71.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------chHHHHHcCCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------QKEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------~~~l~~~~~~v~~  326 (361)
                      .+|+++|.|||+||++|+...|.++++++.+++  +.++.|+.+.+                     +..++ +.|++.+
T Consensus        23 ~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~-~~~~v~~   99 (134)
T d1lu4a_          23 QGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA--VTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIW-ARYNVPW   99 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHH-HHTTCCS
T ss_pred             CCCEEEEEEeecccCCceecchhHHHHhhhhcc--ccccccccccchhhhhhhhhhhccccceeeCchHHHH-HHcCCCc
Confidence            589999999999999999999999999998764  88888887643                     14577 7899999


Q ss_pred             CCeEEEEeCCCCC-eeecCCCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSK-PIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~-~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +|++++++..+.. .+....+..+.++|.+.|++|
T Consensus       100 ~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_         100 QPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             SSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred             CCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence            9999999654432 222223468999999999875

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.42  E-value=4.1e-13  Score=105.44  Aligned_cols=88  Identities=20%  Similarity=0.265  Sum_probs=71.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v~  325 (361)
                      .++++||+|||+||++|+...|.+.++++++++  +.++.|+.+..                      +..+. +.|++.
T Consensus        24 ~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~v~v~~~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~~v~  100 (134)
T d1zzoa1          24 LGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE--VTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVW-ANFGVT  100 (134)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHH-HHTTCC
T ss_pred             CCCEEEEEecccccCcccccchhhHHHHhhhcc--cccccccccccchhHHHHHHhcCCcceeEEeeccchHH-HhcCCC
Confidence            589999999999999999999999999999875  66666665432                      14677 789999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++++++..+. ...+.| ..+.++|.+.|++|
T Consensus       101 ~~P~~~iiD~~G~-i~~~~g-~~~~~~l~~~i~~L  133 (134)
T d1zzoa1         101 QQPAYAFVDPHGN-VDVVRG-RMSQDELTRRVTAL  133 (134)
T ss_dssp             SSSEEEEECTTCC-EEEEES-CCCHHHHHHHHHHH
T ss_pred             ccCeEEEECCCCe-EEEEEC-CCCHHHHHHHHHhh
Confidence            9999999955443 344454 68999999999986

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.39  E-value=6.3e-13  Score=104.65  Aligned_cols=87  Identities=15%  Similarity=0.251  Sum_probs=65.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v~  325 (361)
                      .++++||+|||+||++|+...|.++++++.    ++.++.++.+..                      +..+. ..|+|.
T Consensus        19 ~Gk~vvl~FwatWC~pC~~e~p~l~~~~~~----~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~   93 (136)
T d1z5ye1          19 QGKPVLLNVWATWCPTSRAEHQYLNQLSAQ----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLG-LDLGVY   93 (136)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEESSCHHH-HHHTCC
T ss_pred             CCCEEEEEEEcCcCCCcCccccchhhhhhh----hhhhcccccccchhhhHHHHHHcCCccceeecccchhHH-HhcccC
Confidence            689999999999999999999999998653    355555555432                      14577 789999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ++|++++++..+.....+.| ..+.+++.+.|+++
T Consensus        94 ~~P~~~liD~~G~i~~~~~G-~~~~~~l~~~i~~l  127 (136)
T d1z5ye1          94 GAPETFLIDGNGIIRYRHAG-DLNPRVWEEEIKPL  127 (136)
T ss_dssp             SBSEEEEECTTSCEEEEEES-CCCHHHHHHHTHHH
T ss_pred             CcceEEEEcCCCEEEEEEEc-CCCHHHHHHHHHHH
Confidence            99999999555443445555 67888777766653

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=3.8e-12  Score=100.96  Aligned_cols=90  Identities=14%  Similarity=0.220  Sum_probs=73.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHHc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQK  321 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~~  321 (361)
                      .+++++|+||++||++|+...|.++++.+.+++ ++.++.|+.+..                          +..++ +.
T Consensus        28 ~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~-~~  105 (143)
T d2b5xa1          28 GEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALT-DA  105 (143)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHH-HH
T ss_pred             CCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-cccceeEEeeccccccchhhhhhHHHhhccCccccccCccchH-HH
Confidence            689999999999999999999999999999987 788888876321                          13467 78


Q ss_pred             CCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          322 LQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       322 ~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      |++.++|++++++..+.....+.| ..+.+.|.+.|++|
T Consensus       106 ~~v~~~P~~~~id~~G~i~~~~~G-~~~~~~l~~~l~~l  143 (143)
T d2b5xa1         106 FENEYVPAYYVFDKTGQLRHFQAG-GSGMKMLEKRVNRV  143 (143)
T ss_dssp             TCCCCSSEEEEECTTCBEEEEEES-CSTTHHHHHHHHHH
T ss_pred             cCCCcCCEEEEECCCCEEEEEEEC-CCCHHHHHHHHHhC
Confidence            999999999999554433445555 68889999999875

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: tRNA-Ile-lysidine synthetase, TilS, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=9.3e-13  Score=112.99  Aligned_cols=149  Identities=13%  Similarity=0.119  Sum_probs=93.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc-----CCCceEEEccCCC--CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT-----GRPFRVFSLDTGR--LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSK   81 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~-----~~~i~v~~~dtg~--~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~   81 (361)
                      ++|+||+|||+||++| +++.+.     +.++.++|+|+|.  +-.+..+++.++++++|+++.+.......        
T Consensus        14 kkvlva~SGG~DS~~Ll~ll~~~~~~~~~~~l~~~~vdh~~r~~s~~~~~~~~~~~~~~~i~~~i~~~~~~~--------   85 (227)
T d1ni5a1          14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQ--------   85 (227)
T ss_dssp             SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCSSHHHHHHHHHHHHHHTTCCEEEECCCCCC--------
T ss_pred             CcEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCcchhhhHHHHHHHHhhccCcceeeeccccc--------
Confidence            6899999999999877 777662     3457889999995  34566788999999999999887543210        


Q ss_pred             CCCCCCccchhchhhccccHHHHH--HHccCCEEEEeeeccCCccCccCCCceecCCC--CcCC--cCCCCCeEEEeeCc
Q 018045           82 GLFSFYEDGHQECCRVRKVRPLRR--ALKGLRAWITGQRKDQSPGTRSEIPVVQVDPV--FEGL--EGGVGSLVKWNPVA  155 (361)
Q Consensus        82 ~~~~~~~~~~~~cc~~~K~~pl~~--~~~~~~~~i~G~R~~Es~~~R~~~~~~~~~~~--~~~~--~~~~~~~~~~~Pi~  155 (361)
                      .       ....++..++..-...  ...+.+++++|+.+||-. .-..+........  ..+.  ....++...++||+
T Consensus        86 ~-------~~~~e~~~~~~~~~~~~~~~~~~~~i~~gH~~dD~~-Et~l~~l~~g~~~~~l~~~~~~~~~~~~~iiRPLl  157 (227)
T d1ni5a1          86 E-------GLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQC-ETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLL  157 (227)
T ss_dssp             S-------SSTTTTHHHHHHHHHHHHTCCTTEEEECCCCHHHHH-HHHHHHHTTTCCTTGGGCCCSEEEETTEEEECGGG
T ss_pred             c-------ccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhhhHhhhcccccccccccccccccccccchhhhh
Confidence            0       0011112122211111  122556899999998852 2222211111100  0000  00113566799999


Q ss_pred             cCcHHHHHHHHHhCCCCCC
Q 018045          156 NVKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       156 ~W~~~dv~~yi~~~~lp~~  174 (361)
                      +.+++||.+|++.+|+|+.
T Consensus       158 ~~~k~eI~~~~~~~~l~~~  176 (227)
T d1ni5a1         158 ARTRGELVQWARQYDLRWI  176 (227)
T ss_dssp             SCCHHHHHHHHHHTTCCCB
T ss_pred             cCCHHHHHHHhcccccccc
Confidence            9999999999999999884

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.30  E-value=6.7e-12  Score=99.60  Aligned_cols=77  Identities=16%  Similarity=0.220  Sum_probs=61.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCc-----------------------hHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQ-----------------------KEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~-----------------------~~l~~~~~~  323 (361)
                      ++|+++|+|||+||++|+.+.|.+.++.+++++ .++.++.|+.|...                       ..+. +.|+
T Consensus        27 ~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~-~~y~  105 (144)
T d1i5ga_          27 AGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLT-TGFD  105 (144)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH-HHTT
T ss_pred             CCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHH-HHCC
Confidence            689999999999999999999999999999976 36888999887651                       2366 7899


Q ss_pred             CCCCCeEEEEeCCCCCeeecCC
Q 018045          324 LGSFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~~~~~~~  345 (361)
                      |.++||+++++..+...+...|
T Consensus       106 v~~iPt~~lid~~~G~vi~~~g  127 (144)
T d1i5ga_         106 VKSIPTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEESCH
T ss_pred             CCCcCEEEEEeCCCCEEEeehh
Confidence            9999999999642111555443

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.30  E-value=6.6e-12  Score=98.76  Aligned_cols=92  Identities=8%  Similarity=0.258  Sum_probs=75.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------hHHHHHcCCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------KEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------~~l~~~~~~v~~  326 (361)
                      .+++++|.||++||++|+.+.|.+.++.+.+.+.++.++.|+.+.+.                     ..++ +.|++.+
T Consensus        24 ~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~~  102 (137)
T d1st9a_          24 KGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVL-DAYDVSP  102 (137)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHH-HHTTCCS
T ss_pred             CCCEEEEEEeeccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhh-hhhhccc
Confidence            57899999999999999999999999999998767999999875431                     3577 7899999


Q ss_pred             CCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHhC
Q 018045          327 FPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR  361 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~~  361 (361)
                      +|++++++..+.....+.| ..+.+.+.++|+.++
T Consensus       103 ~P~~~liD~~G~i~~~~~G-~~~~~~~~~~l~~lk  136 (137)
T d1st9a_         103 LPTTFLINPEGKVVKVVTG-TMTESMIHDYMNLIK  136 (137)
T ss_dssp             SCEEEEECTTSEEEEEEES-CCCHHHHHHHHHHHC
T ss_pred             cceEEEECCCCEEEEEEEC-CCCHHHHHHHHHhhC
Confidence            9999999665543444555 778999999998775

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-11  Score=98.12  Aligned_cols=101  Identities=14%  Similarity=0.201  Sum_probs=75.3

Q ss_pred             cccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHH---HHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeE
Q 018045          256 RTGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSY---VELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTI  330 (361)
Q Consensus       256 ~~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~---~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~  330 (361)
                      ..+|++.+.. ..++|++||+|+++||++|+.|....   .++.+.++. ++.++.||.+..+ ..++ ++|+|.++|++
T Consensus        28 ~~~~~~A~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~~~e~~~~~-~~y~v~~~Pti  105 (147)
T d2dlxa1          28 KGSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHDSEEGQRYI-QFYKLGDFPYV  105 (147)
T ss_dssp             CSCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESSSHHHHHHH-HHHTCCSSSEE
T ss_pred             cCCHHHHHHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-heeEeeecccchhhhhhh-hheecCceeEE
Confidence            3456655443 23589999999999999999998865   667777765 7999999987652 5678 89999999999


Q ss_pred             EEEeC-CCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          331 LFFPK-HSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       331 ~~~~~-g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      +++.. +++ .+...+ ..+++++.+.|+++
T Consensus       106 ~~idp~~ge-~v~~~~-~~~~~~fl~~L~~f  134 (147)
T d2dlxa1         106 SILDPRTGQ-KLVEWH-QLDVSSFLDQVTGF  134 (147)
T ss_dssp             EEECTTTCC-CCEEES-SCCHHHHHHHHHHH
T ss_pred             EEEeCCCCe-EecccC-CCCHHHHHHHHHHH
Confidence            99963 333 333334 47888887777653

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Thiamine biosynthesis protein ThiI, C-terminal domain
species: Bacillus anthracis [TaxId: 1392]

Probab=99.27  E-value=4e-12  Score=108.14  Aligned_cols=150  Identities=10%  Similarity=0.069  Sum_probs=96.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCC-CCcHHHHHHHHHHHHHhCCcE---EEEc-CChHHHHHHHHhcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTG-RLNPETYRFFDEVEKHFGIRI---EYMF-PDAVEVQALVRSKGL   83 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg-~~~pet~~~v~~~~~~~g~~i---~~~~-p~~~~~~~~~~~~~~   83 (361)
                      ++++|+||||+||+++ +|+.+.+.++.++|+|.| ...++-.+.+.++++.++...   .... +............  
T Consensus         5 gKvvv~~SGG~DS~vla~ll~k~g~~v~av~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--   82 (218)
T d2c5sa1           5 GKVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHSPPFTSERAKQKVIDLAQELTKYCKRVTLHLVPFTEVQKTINKEI--   82 (218)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHBTEEEEEEEEECTTTSCHHHHHHHHHHHHHHGGGSSCEEEEEEECHHHHHHHHHHS--
T ss_pred             CEEEEEecCcHHHHHHHHHHHHcCCeEEEEEEeCCCccchHHHHHHHhhhccccccccccceEEeecchhhhhhhhcc--
Confidence            4899999999999877 888888888999999998 457778888888888886532   2111 1122222222221  


Q ss_pred             CCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           84 FSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        84 ~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                         ........|...+..-+.++..  +.+.+++|+..+|.. .-........+.        ..+..-++||++|+.+|
T Consensus        83 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~G~~~~d~~-~~~~~~l~~~~~--------~~~~~iirPll~~~K~e  150 (218)
T d2c5sa1          83 ---PSSYSMTVMRRMMMRITERIAEERNALAITTGESLGQVA-SQTLDSMHTINE--------VTNYPVIRPLITMDKLE  150 (218)
T ss_dssp             ---CGGGHHHHHHHHHHHHHHHHHHHTTCCEEECCCCSSSTT-SCCHHHHHHHGG--------GCCSCEECTTTTCCHHH
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHhccceEEeeeecCcch-hhhHHHHhccch--------hchhhHHHhhhcCCHHH
Confidence               1112223344444455555554  567999999998864 211111111111        01234689999999999


Q ss_pred             HHHHHHhCCCCC
Q 018045          162 IWNFLRTMDVPI  173 (361)
Q Consensus       162 v~~yi~~~~lp~  173 (361)
                      |.+|.+++|+|+
T Consensus       151 I~~~a~~~gi~~  162 (218)
T d2c5sa1         151 IIKIAEEIGTYD  162 (218)
T ss_dssp             HHHHHHHTTCHH
T ss_pred             HHHHHHHcCCcc
Confidence            999999999963

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.27  E-value=6.7e-12  Score=99.60  Aligned_cols=87  Identities=14%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v~  325 (361)
                      ++|++||+|||+||++|+.+.|.+.++.+.++   +.+..|..+..                      +..+. +.|++.
T Consensus        30 kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~v~  105 (144)
T d1knga_          30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKR---FQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS-IEWGVY  105 (144)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHTTCTT---SEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH-HHTTCC
T ss_pred             CCCEEEEEeeccccccccccCchhhhhhhccC---ceeEEEEeeechHHHHHHHHHcCCccccccccccchhh-hhcCcc
Confidence            68999999999999999999999998876653   45554443322                      14677 899999


Q ss_pred             CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          326 SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       326 ~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      ++|++++++..+.....+.| ..+.++|.+.|++
T Consensus       106 ~~P~~~liD~~G~i~~~~~G-~~~~~~l~~~i~~  138 (144)
T d1knga_         106 GVPETFVVGREGTIVYKLVG-PITPDNLRSVLLP  138 (144)
T ss_dssp             SSCEEEEECTTSBEEEEEES-CCCHHHHHHTHHH
T ss_pred             ccceEEEEcCCCeEEEEEeC-CCCHHHHHHHHHH
Confidence            99999999654443444555 7888988887765

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=5.9e-12  Score=98.82  Aligned_cols=80  Identities=16%  Similarity=0.334  Sum_probs=58.5

Q ss_pred             ccHHHHHhh-cCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          257 TGMENLARL-DHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       257 ~~f~~~~~~-~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      .+|++.+.. ..++|++||+|||+||++|+.++|.+.+..+..+. .++..+.||.+.. ..+.........+||++++.
T Consensus        12 ~~~~~al~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~-~~~~~~~~~~~~~Pt~~~~d   90 (135)
T d1sena_          12 RTLEDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLEDEEE-PKDEDFSPDGGYIPRILFLD   90 (135)
T ss_dssp             CCHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGS-CSCGGGCTTCSCSSEEEEEC
T ss_pred             eEHHHHHHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCCCCcC-HHHHHHHhhcccceeEEEEC
Confidence            345554432 33699999999999999999999998766544332 3689999999887 66552334556789999995


Q ss_pred             -CCC
Q 018045          335 -KHS  337 (361)
Q Consensus       335 -~g~  337 (361)
                       +|+
T Consensus        91 ~~G~   94 (135)
T d1sena_          91 PSGK   94 (135)
T ss_dssp             TTSC
T ss_pred             CCCe
Confidence             454

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.23  E-value=2.2e-11  Score=96.56  Aligned_cols=75  Identities=17%  Similarity=0.303  Sum_probs=61.3

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCc-----------------------hHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQ-----------------------KEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~-----------------------~~l~~~~~~  323 (361)
                      ++|+++|+|||+||++|+.+.|.+.++++++.. .++.++.|+.+...                       ..+. +.|+
T Consensus        27 ~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~y~  105 (144)
T d1o73a_          27 VGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELG-KTFG  105 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHH-HHHT
T ss_pred             CCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHH-HHcC
Confidence            689999999999999999999999999999964 47999999887541                       2366 7899


Q ss_pred             CCCCCeEEEEeC-CCCCeeecC
Q 018045          324 LGSFPTILFFPK-HSSKPIKYP  344 (361)
Q Consensus       324 v~~~Pt~~~~~~-g~~~~~~~~  344 (361)
                      |.++|++++++. ++. .+...
T Consensus       106 v~~~Pt~~lID~~~G~-Ii~~~  126 (144)
T d1o73a_         106 VESIPTLITINADTGA-IIGTQ  126 (144)
T ss_dssp             CCSSSEEEEEETTTCC-EEESC
T ss_pred             CCcCCEEEEEECCCCE-EEeec
Confidence            999999999974 332 55444

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.19  E-value=7.3e-12  Score=92.68  Aligned_cols=82  Identities=12%  Similarity=0.254  Sum_probs=68.7

Q ss_pred             CCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCC
Q 018045          267 HRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSE  346 (361)
Q Consensus       267 ~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~  346 (361)
                      ++..++|+.|+++||++|+.+.+.|+++...+.   ..++.+|.+.+ +++. ++|+++ +|++++  +|+  ... .+ 
T Consensus        13 ~~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~~~-~~l~-~~y~~~-VPvl~i--dg~--~~~-~g-   80 (100)
T d1wjka_          13 NRALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLPEN-STWY-ERYKFD-IPVFHL--NGQ--FLM-MH-   80 (100)
T ss_dssp             CCCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSSTT-HHHH-HHSSSS-CSEEEE--SSS--EEE-ES-
T ss_pred             CCCCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccccC-HHHH-HHhccc-CCceee--cCc--eEE-eC-
Confidence            367789999999999999999999999987764   57888999999 9999 999987 997754  666  332 23 


Q ss_pred             CCCHHHHHHHHHHh
Q 018045          347 RRDVDSLMAFVDAL  360 (361)
Q Consensus       347 ~~~~~~l~~~i~~~  360 (361)
                      ..+.+.|.++|+++
T Consensus        81 ~~d~~~L~~~L~~l   94 (100)
T d1wjka_          81 RVNTSKLEKQLRKL   94 (100)
T ss_dssp             SCCHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHHH
Confidence            68999999999876

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.15  E-value=4.7e-11  Score=98.87  Aligned_cols=89  Identities=21%  Similarity=0.369  Sum_probs=68.1

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------------chHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------------~~~l~~  319 (361)
                      .++++||+|||+||++|+...|.+.+++++|++ ++.|+.|+....                            +..++ 
T Consensus        31 kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~-~v~~v~i~snd~~~~~~~~~e~~~~~~~~~~~~~p~l~D~~~~~~-  108 (187)
T d2cvba1          31 HEPLLAVVFMCNHCPYVKGSIGELVALAERYRG-KVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQEVA-  108 (187)
T ss_dssp             CSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT-TEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSHHH-
T ss_pred             CCCeEEEEEeCCCCccchhhhhhhhhhhhhccc-cceeeeeeccccccccccchHHHHHHHHHhCCcceeeechhhhhc-
Confidence            578999999999999999999999999999987 788888874210                            14678 


Q ss_pred             HcCCCCCCCeEEEEeCCCCCeeecCCC---------CCCHHHHHHHHHHh
Q 018045          320 QKLQLGSFPTILFFPKHSSKPIKYPSE---------RRDVDSLMAFVDAL  360 (361)
Q Consensus       320 ~~~~v~~~Pt~~~~~~g~~~~~~~~~~---------~~~~~~l~~~i~~~  360 (361)
                      +.|++.++|++++++...  .+.|.|.         ..+..+|.+-|+++
T Consensus       109 ~~~~v~~~P~~~liD~~G--~i~y~G~idd~~~~~~~~~~~~L~~Ai~~l  156 (187)
T d2cvba1         109 KAYRALRTPEVFLFDERR--LLRYHGRVNDNPKDPSKVQSHDLEAAIEAL  156 (187)
T ss_dssp             HHTTCCEESEEEEECTTC--BEEEEECSSSCTTCGGGCCCCHHHHHHHHH
T ss_pred             ccccccceeeEEEEcCCC--eEEEEeeecCCCCCCCCCCHHHHHHHHHHH
Confidence            899999999999997655  3445441         12334566666654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.14  E-value=1.4e-10  Score=91.68  Aligned_cols=77  Identities=16%  Similarity=0.288  Sum_probs=61.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCCc-----------------------hHHHHHcCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGDQ-----------------------KEYAKQKLQ  323 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~~-----------------------~~l~~~~~~  323 (361)
                      .+|+++|+||++||++|+...|.+.++++++.. .++.++.|+.+...                       ..+. +.|+
T Consensus        25 ~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~-~~y~  103 (144)
T d1o8xa_          25 AGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLS-KHFN  103 (144)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHH-HHTT
T ss_pred             CCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHH-HHcC
Confidence            589999999999999999999999999999966 36888888877541                       3567 7899


Q ss_pred             CCCCCeEEEEeCCCCCeeecCC
Q 018045          324 LGSFPTILFFPKHSSKPIKYPS  345 (361)
Q Consensus       324 v~~~Pt~~~~~~g~~~~~~~~~  345 (361)
                      |.++||+++++......+...+
T Consensus       104 v~~~Pt~~liD~~~G~Vi~~~~  125 (144)
T d1o8xa_         104 VESIPTLIGVDADSGDVVTTRA  125 (144)
T ss_dssp             CCSSSEEEEEETTTCCEEESCH
T ss_pred             CCcCCEEEEEeCCCCEEEEEec
Confidence            9999999999743212555543

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.04  E-value=6.3e-10  Score=91.04  Aligned_cols=92  Identities=20%  Similarity=0.314  Sum_probs=68.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------------hHHHHH
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------------KEYAKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------------~~l~~~  320 (361)
                      .+|++||+||++||++|+...+.+.++.+.+.+.++.++.|.++..+                           ..+. .
T Consensus        55 kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-~  133 (176)
T d1jfua_          55 RGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLK-A  133 (176)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHHHH-T
T ss_pred             CCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhhhCCcceeeeecchhHHHHHHh-h
Confidence            57999999999999999999999999999998767777777765321                           1222 3


Q ss_pred             cCCCCCCCeEEEEeCCCCCeeecCCC-CCCHHHHHHHHHHh
Q 018045          321 KLQLGSFPTILFFPKHSSKPIKYPSE-RRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~~~Pt~~~~~~g~~~~~~~~~~-~~~~~~l~~~i~~~  360 (361)
                      .+++.++|++++++..+.....+.|. ..+.+++.+.|+.+
T Consensus       134 ~~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l~al  174 (176)
T d1jfua_         134 IGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAA  174 (176)
T ss_dssp             TTCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHHHHH
T ss_pred             hccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHHHHh
Confidence            46788899999996555433344441 24568899998875

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=4.2e-10  Score=92.16  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=81.9

Q ss_pred             CCcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCc-EEEEcCChHHHHH----HHHhcC
Q 018045            9 GNDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIR-IEYMFPDAVEVQA----LVRSKG   82 (361)
Q Consensus         9 ~~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~-i~~~~p~~~~~~~----~~~~~~   82 (361)
                      +++|+||||||.||++| ||+.+.+.++.+++++.|....+..+-........... ...+.-.......    ......
T Consensus        10 gkKv~vA~SGGvDSsvll~lL~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T d1k92a1          10 GQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAF   89 (188)
T ss_dssp             TSEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEECCCTTCSCTTHHHHHHHHHTCSEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHcCCcCeEEeeecCCCchHHHHHHHHHHHHcccccccccchhhhhhhhhhhHHHHHHH
Confidence            46999999999999877 99999999999999999964443333333333334333 3222211111111    111100


Q ss_pred             CCCCCc---cchhchhhccccHHHHHHHccC--CEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccC
Q 018045           83 LFSFYE---DGHQECCRVRKVRPLRRALKGL--RAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANV  157 (361)
Q Consensus        83 ~~~~~~---~~~~~cc~~~K~~pl~~~~~~~--~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W  157 (361)
                      ......   .....||...+..-+.......  ...+.|.........+.........          +..-.+.|+.+|
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~ii~P~~~~  159 (188)
T d1k92a1          90 HNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTN----------AELQIYKPWLDT  159 (188)
T ss_dssp             CCEETTEECCCHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTTSSHHHHHHHHHHHHC----------TTCEEECGGGCH
T ss_pred             HHHHhCCccccchHHHHHHHHHHHHHHHHHhCchhhhhhhcccccccccchhHHHhhC----------CCCCeechhhhh
Confidence            000000   1123345555554444444432  3444444332221000000000111          234467898887


Q ss_pred             -------cHHHHHHHHHhCCCCCC
Q 018045          158 -------KGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       158 -------~~~dv~~yi~~~~lp~~  174 (361)
                             +.+||-+|++++||||.
T Consensus       160 ~~~~~~~sk~ei~~ya~~~gi~~~  183 (188)
T d1k92a1         160 DFIDELGGRHEMSEFMIACGFDYK  183 (188)
T ss_dssp             HHHHHSSSHHHHHHHHHHTTCCCC
T ss_pred             hhhcccCCHHHHHHHHHHcCCCCC
Confidence                   79999999999999984

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.87  E-value=8.3e-10  Score=88.53  Aligned_cols=38  Identities=18%  Similarity=0.406  Sum_probs=33.6

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNP   47 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~p   47 (361)
                      ++|+||+|||+||++| +|+.+.+.++.+++++.+....
T Consensus         2 ~KIvvalSGGvDS~vl~~lL~~~~~~v~a~~~~~~~~~~   40 (168)
T d1vl2a1           2 EKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQKDD   40 (168)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEESSCCCC
T ss_pred             CEEEEEeccHHHHHHHHHHHHHcCCeEEEEEcccCCCcc
Confidence            6899999999999877 8999999999999999996543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.87  E-value=3e-09  Score=86.00  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=61.2

Q ss_pred             ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcC---CCCCCCe
Q 018045          253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKL---QLGSFPT  329 (361)
Q Consensus       253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~---~v~~~Pt  329 (361)
                      .++....+++..  -+++.+++.||++||++|+...|.++++++.+++  +.|..|+.+.+ .+.. .+|   +...+|.
T Consensus        40 ~l~~~~~~~l~~--~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~--~~~~~i~~d~~-~~~~-~~~~~~~~~~~p~  113 (166)
T d1z6na1          40 GLPSALTERLQR--IERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN--IELAIISKGRA-EDDL-RQRLALERIAIPL  113 (166)
T ss_dssp             CCCHHHHHHHHT--CCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT--EEEEEECHHHH-HHHT-TTTTTCSSCCSSE
T ss_pred             cccHHHHHHHHH--hcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC--CcEEEEECccC-HHHH-HHHHHhccccccc
Confidence            355444444432  2467889999999999999999999999998864  88888999988 8888 777   4457888


Q ss_pred             EEEEeCCC
Q 018045          330 ILFFPKHS  337 (361)
Q Consensus       330 ~~~~~~g~  337 (361)
                      ++++.+..
T Consensus       114 ~~~~d~~~  121 (166)
T d1z6na1         114 VLVLDEEF  121 (166)
T ss_dssp             EEEECTTC
T ss_pred             eeecCccc
Confidence            88886554

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Argininosuccinate synthetase, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=1.9e-09  Score=86.02  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=41.7

Q ss_pred             cEEEEecchHHHHHH-HHHHHc-CCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045           11 DIAIAFSGAEDVALI-EYAHLT-GRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD   70 (361)
Q Consensus        11 ~i~vs~SGGKDS~~l-~l~~~~-~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~   70 (361)
                      +|+||+|||+||++| +++.+. +.++..++++++...  ..+........++.........
T Consensus         2 KvlvA~SGG~DS~vll~lL~e~~~~~vi~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   61 (165)
T d1j20a1           2 KIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQGE--EVEEAREKALRTGASKAIALDL   61 (165)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHTCEEEEEEEESSCSS--CHHHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEEEeCHHHHHHHHHHHHHcCCCEEEEEEeccCChH--HHHHHHHHHHhccccceeeeeh
Confidence            689999999999877 887764 777777888887542  2344566677788776655443

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Helicobacter pylori [TaxId: 210]

Probab=98.62  E-value=5e-08  Score=84.13  Aligned_cols=150  Identities=14%  Similarity=0.128  Sum_probs=90.8

Q ss_pred             hHhC-CcEEEEecchHHHHHH-HHHHHcC-CCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcC
Q 018045            6 EKFG-NDIAIAFSGAEDVALI-EYAHLTG-RPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus         6 ~~~~-~~i~vs~SGGKDS~~l-~l~~~~~-~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~   82 (361)
                      +..| ++++|++|||-||+|+ .|+.+.+ .++..++++++...++..+-+..+++.+|++...+...  .+........
T Consensus        19 ~~~G~k~vvvglSGGVDSsv~A~L~~~a~~~~v~~v~mp~~~~~~~~~~~A~~la~~lgi~~~~i~~~--~~~~~~~~~~   96 (255)
T d1xnga1          19 QKRGFKKVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYSIA--PYDAIFSSHF   96 (255)
T ss_dssp             HHTTCCCEEEECCSSHHHHHHHHHHHHHHGGGEEEEECCCSSSCHHHHHHHHHHHHHHTCCEEECCCH--HHHHHHHHHC
T ss_pred             HHcCCCeEEEECCCCHHHHHHHHHHHHHhhhhcchhcCcchhcchhhHHHHHHHHHHhhhcchhhhhH--HHHhhhhhhc
Confidence            3445 6899999999999877 6777754 45888999999999999999999999999998776432  2222222221


Q ss_pred             CCCCCccchhchhhccccHHHHHHHccCCEEEEee-eccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHH
Q 018045           83 LFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQ-RKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGND  161 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i~G~-R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~d  161 (361)
                      ... .......++..+++.-+-.........++|. ..+|+. .......  .+           ...-+.||.+.+..|
T Consensus        97 ~~~-~~~~~~n~~ar~r~~~l~~~a~~~~~~v~gt~n~~e~~-~g~~t~~--gd-----------~~~~l~Pl~dL~K~e  161 (255)
T d1xnga1          97 KDA-SLTRKGNFCARLRMAFLYDYSLKSDSLVIGTSNKSERM-LGYGTLF--GD-----------LACAINPIGELFKTE  161 (255)
T ss_dssp             TTC-CHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHH-HTCSCTT--TT-----------TCCSEETTTTSCHHH
T ss_pred             cch-hhhhHHHHHHHHhHHHHHHHHhhcCCccCCCccHHHHh-ccccchh--hh-----------hccchhhhcCcCHHH
Confidence            110 0001122233333222222222223334443 233332 2221110  01           122589999999999


Q ss_pred             HHHHHHhCCCC
Q 018045          162 IWNFLRTMDVP  172 (361)
Q Consensus       162 v~~yi~~~~lp  172 (361)
                      |++..+..|||
T Consensus       162 Vr~LA~~lglP  172 (255)
T d1xnga1         162 VYELARRLNIP  172 (255)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCc
Confidence            99999999986

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: GMP synthetase, central domain
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=2e-07  Score=76.41  Aligned_cols=60  Identities=23%  Similarity=0.396  Sum_probs=44.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHH-cCCCceEEEccCCCC-cHHHHHHHHHHHHHhCCcEEEEcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHL-TGRPFRVFSLDTGRL-NPETYRFFDEVEKHFGIRIEYMFP   69 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~-~~~~i~v~~~dtg~~-~pet~~~v~~~~~~~g~~i~~~~p   69 (361)
                      ++++|++|||.||+|+ +|+.+ .+....+++++.+.. .....+-.+..++.+++++.++.-
T Consensus        21 ~kvvV~lSGGVDSsv~a~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~   83 (197)
T d1gpma1          21 DKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDMFGDHFGLNIVHVPA   83 (197)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHGGGEEEEEEECSCSCTTHHHHHHHHHTTTTCCCEEEEEC
T ss_pred             CcEEEEcCCCHHHHHHHHHHHHhcCceeeeeecccccccccchHHHHHHHHHhcCcccccccH
Confidence            6899999999999877 77766 566666666666643 445556677788888988877643

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.39  E-value=6.7e-07  Score=71.13  Aligned_cols=92  Identities=12%  Similarity=0.248  Sum_probs=66.3

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCC-
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLG-  325 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~-  325 (361)
                      ++|+++|.|| ++||++|....+.+.++.+.++..++.++.|..+..                    +..++ +.|++. 
T Consensus        29 ~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~-~~~gv~~  107 (160)
T d2cx4a1          29 RGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVDSPWCLKKFKDENRLAFNLLSDYNREVI-KLYNVYH  107 (160)
T ss_dssp             TSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESSCHHHHHHHHHHHTCSSEEEECTTSHHH-HHTTCEE
T ss_pred             CCCEEEEEecccccCCchhhhhhhhhcccccccccccccccccccchhhhhhhcccceeeEEEeecCCcchH-HHcCccc
Confidence            6899999999 999999999999999999988876788888876532                    14577 778773 


Q ss_pred             ---------CCCeEEEEeCCCCCeeecC----CCCCCHHHHHHHHHHh
Q 018045          326 ---------SFPTILFFPKHSSKPIKYP----SERRDVDSLMAFVDAL  360 (361)
Q Consensus       326 ---------~~Pt~~~~~~g~~~~~~~~----~~~~~~~~l~~~i~~~  360 (361)
                               ..|+++++...+.....+.    .+..+.+++.+-++++
T Consensus       108 ~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~eil~~l~~l  155 (160)
T d2cx4a1         108 EDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYDEVVREANKI  155 (160)
T ss_dssp             EEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHHHHHHHHHHH
T ss_pred             cccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHHHHHHHHHHH
Confidence                     4788888855443222221    1234677777777664

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.35  E-value=1.5e-06  Score=71.30  Aligned_cols=93  Identities=14%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .+|.+||+|| ++||+.|....+.|.++.++++..++.++.|..|..                           +.+++ 
T Consensus        32 ~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~Ds~~s~~~~~~~~~~~~~~~~l~fpllsD~~~~v~-  110 (194)
T d1uula_          32 KGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMDSEYSHLAWTSIERKRGGLGQMNIPILADKTKCIM-  110 (194)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCSCSSCEEECTTCHHH-
T ss_pred             CCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecCchhhhhhhhhhhhhhccccCCCcceeeCCcchHH-
Confidence            5789999999 999999999999999999999877899999987631                           14678 


Q ss_pred             HcCCC------CCCCeEEEEeCCCCC-eee-cC-CCCCCHHHHHHHHHHhC
Q 018045          320 QKLQL------GSFPTILFFPKHSSK-PIK-YP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v------~~~Pt~~~~~~g~~~-~~~-~~-~~~~~~~~l~~~i~~~~  361 (361)
                      +.|++      ..+|+.++++..+.+ .+. +. .-.++.+++.+.|+.++
T Consensus       111 ~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~l~alQ  161 (194)
T d1uula_         111 KSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAFQ  161 (194)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHhh
Confidence            78888      246778888554432 221 11 12468999999988763

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.34  E-value=6.5e-07  Score=72.04  Aligned_cols=93  Identities=15%  Similarity=0.264  Sum_probs=70.9

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~  322 (361)
                      .+|.++|.|| ++||+.|....+.+.+..+.++..++.++.|..+..                        +..++ +.|
T Consensus        43 ~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~vv~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~-~~y  121 (169)
T d2bmxa1          43 PGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELS-QAA  121 (169)
T ss_dssp             TTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHH-HHH
T ss_pred             CCCeEEEEEecCCCCccccccccccccccccccccCcceeeccccchhhhhhhcccccccccceEEEEeccHHHHH-HHc
Confidence            5789999999 999999999999999999999876789988887532                        14677 788


Q ss_pred             CC-----CCCCeEEEEe-CCCCCeeec-C-CCCCCHHHHHHHHHHhC
Q 018045          323 QL-----GSFPTILFFP-KHSSKPIKY-P-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       323 ~v-----~~~Pt~~~~~-~g~~~~~~~-~-~~~~~~~~l~~~i~~~~  361 (361)
                      +|     ...|+.++++ +|+...+.. . .-.++.+++.+.|++|+
T Consensus       122 gv~~~~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~l~alq  168 (169)
T d2bmxa1         122 GVLNADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRVLDALQ  168 (169)
T ss_dssp             TCBCTTSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             CCCccCCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHHHHHhc
Confidence            87     5778888886 454322221 1 11367899999998874

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.34  E-value=1.2e-06  Score=70.20  Aligned_cols=93  Identities=15%  Similarity=0.263  Sum_probs=67.2

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .+|.+||.|| ++||+.|....+.|.++.++++..++.++.|+.+..                           ...++ 
T Consensus        32 ~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~-  110 (167)
T d1e2ya_          32 KGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCDSEYSHLQWTSVDRKKGGLGPMAIPMLADKTKAIA-  110 (167)
T ss_dssp             TTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHSCGGGTCCCCCSSCEEECTTCHHH-
T ss_pred             CCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCCcHHhHHHHHhhHHHhcccccccccccccchhHHH-
Confidence            5788999999 999999999999999999999887888998887642                           03455 


Q ss_pred             HcCCCC------CCCeEEEEe-CCCCCeeecCC--CCCCHHHHHHHHHHhC
Q 018045          320 QKLQLG------SFPTILFFP-KHSSKPIKYPS--ERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~-~g~~~~~~~~~--~~~~~~~l~~~i~~~~  361 (361)
                      +.|++.      ..|++++++ +|+...+....  ..++.+++.+.|+.++
T Consensus       111 ~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~l~alq  161 (167)
T d1e2ya_         111 RAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLVEALQ  161 (167)
T ss_dssp             HHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHHh
Confidence            566662      367788886 45422121111  1357889888888763

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=98.32  E-value=2.9e-06  Score=65.24  Aligned_cols=105  Identities=13%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCC--CC
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQL--GS  326 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v--~~  326 (361)
                      +-|.++|.+|+..+.+   .+++.++.|+.+- .....+...+.++|+++++ .+.|+.+|.+.+ .... +.|++  ..
T Consensus         6 PLv~e~~~~n~~~~~~---~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~-ki~Fv~vd~~~~-~~~l-~~~gl~~~~   78 (133)
T d2djka1           6 PLIGEIGPETYSDYMS---AGIPLAYIFAETA-EERKELSDKLKPIAEAQRG-VINFGTIDAKAF-GAHA-GNLNLKTDK   78 (133)
T ss_dssp             CCSEECCHHHHHHHHH---TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTT-TSEEEEECTTTT-GGGT-TTTTCCSSS
T ss_pred             CceeccChhhHHHHhc---CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcC-ceEEEEEeHHHh-HHHH-HHhcCCccc
Confidence            5688999999999887   7889888888765 4578889999999999998 899999999988 7777 78888  56


Q ss_pred             CCeEEEEeCCCCCeeecC-CCCCCHHHHHHHHHHh
Q 018045          327 FPTILFFPKHSSKPIKYP-SERRDVDSLMAFVDAL  360 (361)
Q Consensus       327 ~Pt~~~~~~g~~~~~~~~-~~~~~~~~l~~~i~~~  360 (361)
                      +|.++++.........+. .+..+.++|.+||+++
T Consensus        79 ~P~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~  113 (133)
T d2djka1          79 FPAFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDF  113 (133)
T ss_dssp             SSEEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCceecCCccccCCHHHHHHHHHHH
Confidence            899999865443333433 3367999999999875

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Queuosine biosynthesis protein QueC
species: Erwinia carotovora [TaxId: 554]

Probab=98.26  E-value=9.5e-07  Score=74.66  Aligned_cols=160  Identities=11%  Similarity=0.033  Sum_probs=91.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHH---HHHHHhcCCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEV---QALVRSKGLFS   85 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~---~~~~~~~~~~~   85 (361)
                      .+++|.||||.||+++ +++.+.+.++..||+|.|.-.....+..+...++++.....+.......   .........+.
T Consensus         2 kK~Vvl~SGGlDS~v~a~~l~~~g~~v~~v~~~ygqr~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (230)
T d2pg3a1           2 KRAVVVFSGGQDSTTCLIQALQDYDDVHCITFDYGQRHRAEIEVAQELSQKLGAAAHKVLDVGLLNELATSSLTRDSIPV   81 (230)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHCSEEEEEEEESSSSCHHHHHHHHHHHHHHTCSEEEEEECTHHHHTSHHHHHHTTCCC
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCeEEEEEEECCCccHHHHHHHHHhHHhhccccccccchhhhhhccccccccccccc
Confidence            4789999999999877 7777888899999999997667788999999999998876554332110   00011111110


Q ss_pred             CC---c--cchhc---hhhccccHHHHHHH--ccCCEEEEeeeccCCccCccCCCceec-CCCCcCCcCCCCCeEEEeeC
Q 018045           86 FY---E--DGHQE---CCRVRKVRPLRRAL--KGLRAWITGQRKDQSPGTRSEIPVVQV-DPVFEGLEGGVGSLVKWNPV  154 (361)
Q Consensus        86 ~~---~--~~~~~---cc~~~K~~pl~~~~--~~~~~~i~G~R~~Es~~~R~~~~~~~~-~~~~~~~~~~~~~~~~~~Pi  154 (361)
                      ..   .  .....   |...+.......+.  .+.+.+++|....+....+...+.+.- ...... .....++...+|+
T Consensus        82 ~~~~~~~~~~~~~~~p~r~~~~l~~~~~~a~~~~~~~i~~G~~~~d~~~~~d~~~~f~~~~~~~~~-~~~~~~~~i~~P~  160 (230)
T d2pg3a1          82 PDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAVITGVCETDFSGYPDCRDEFVKALNQAIV-LGIARDIRFETPL  160 (230)
T ss_dssp             CC---------CCCCTTHHHHHHHHHHHHHHHHTCSEEECCCCSCSSSCCGGGSHHHHHHHHHHHH-HHHTSCCEEECTT
T ss_pred             cchhhhhccCCceeeeechHHHHHHHHHHHHHhhccccccccccccccccccccHhHHHHHHHHHH-hcccccceeEeee
Confidence            00   0  00111   12222222212111  266788999888775322222211100 000000 0001235567999


Q ss_pred             ccCcHHHHHHHHHhCC
Q 018045          155 ANVKGNDIWNFLRTMD  170 (361)
Q Consensus       155 ~~W~~~dv~~yi~~~~  170 (361)
                      .+++..||.......+
T Consensus       161 ~~~tK~EI~~~~~~~~  176 (230)
T d2pg3a1         161 MWLNKAETWALADYYQ  176 (230)
T ss_dssp             TTCCHHHHHHHHHHTT
T ss_pred             ecCCHHHHHHHHHhcc
Confidence            9999999999887765

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=2.5e-06  Score=67.49  Aligned_cols=91  Identities=11%  Similarity=0.107  Sum_probs=63.4

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------chHHHHHcCCCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------QKEYAKQKLQLGS  326 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------~~~l~~~~~~v~~  326 (361)
                      +++.+++.|| +.||+.|....+.|.+....++. ++.++.|..+..                    +.+++ +.|++..
T Consensus        32 k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~-~~~~~~is~d~~~~~~~f~~~~~l~f~~L~D~~~~v~-~~ygv~~  109 (156)
T d2a4va1          32 NNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE-YAAVFGLSADSVTSQKKFQSKQNLPYHLLSDPKREFI-GLLGAKK  109 (156)
T ss_dssp             HCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT-TCEEEEEESCCHHHHHHHHHHHTCSSEEEECTTCHHH-HHHTCBS
T ss_pred             CccEEEEEecccccCcchhhhhHHHHHHHHHHhh-ccceeeeccchhhhHHhhhcccCccceeccchHHHHH-HHcCCCc
Confidence            4666777777 89999999999999999999986 677778876542                    14677 7888876


Q ss_pred             CC------eEEEEeCCCCCeeecCCCC--C----CHHHHHHHHHHhC
Q 018045          327 FP------TILFFPKHSSKPIKYPSER--R----DVDSLMAFVDALR  361 (361)
Q Consensus       327 ~P------t~~~~~~g~~~~~~~~~~~--~----~~~~l~~~i~~~~  361 (361)
                      .|      ++++..+|+. .+.+.+..  .    ..+++.++|++++
T Consensus       110 ~~~~~~~r~~~i~~dg~i-~~~~~~~~~~~~~~~~~~evl~~lk~l~  155 (156)
T d2a4va1         110 TPLSGSIRSHFIFVDGKL-KFKRVKISPEVSVNDAKKEVLEVAEKFK  155 (156)
T ss_dssp             SSSSCBCCEEEEEETTEE-EEEEESCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccCCeeEEEEEEECCeE-EEEEEEeCCCCCcchHHHHHHHHHHHhc
Confidence            66      4566677764 33333311  1    2356778888764

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=98.19  E-value=1.4e-06  Score=69.73  Aligned_cols=103  Identities=14%  Similarity=0.192  Sum_probs=71.5

Q ss_pred             CCceecCcccHHHHHhhcCCCCcEEEEEECC-CChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------
Q 018045          249 QNLVTLNRTGMENLARLDHRQEPWLVVLYAP-WCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------  313 (361)
Q Consensus       249 ~~v~~l~~~~f~~~~~~~~~~~~vlv~F~a~-wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------  313 (361)
                      ....+++.++|        .+|.+||.||.. ||++|....+.|.++.+++...++.++.|..|..              
T Consensus        19 ~~~~~vslsd~--------~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D~~~~~~~~~~~~~~~~   90 (166)
T d1we0a1          19 KDFFEVTEADL--------KGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTDTHFVHKAWHENSPAVG   90 (166)
T ss_dssp             SCCEEEETTTT--------SSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHSCHHHH
T ss_pred             cceeEeeHHHh--------CCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccccHHHHHHHhhhhhhhc
Confidence            34455555544        578899999955 9999999999999999999876899999988652              


Q ss_pred             ----------chHHHHHcCCCC------CCCeEEEEeCCCCCee-ecCC--CCCCHHHHHHHHHHh
Q 018045          314 ----------QKEYAKQKLQLG------SFPTILFFPKHSSKPI-KYPS--ERRDVDSLMAFVDAL  360 (361)
Q Consensus       314 ----------~~~l~~~~~~v~------~~Pt~~~~~~g~~~~~-~~~~--~~~~~~~l~~~i~~~  360 (361)
                                +..++ +.|++.      ..|+.+++++.+.+.. ....  -.++.+++.+.|+.+
T Consensus        91 ~~~fpll~D~~~~v~-~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~lkal  155 (166)
T d1we0a1          91 SIEYIMIGDPSQTIS-RQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA  155 (166)
T ss_dssp             TCCSEEEECTTCHHH-HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHHHHHH
T ss_pred             ccccccccCcccHHH-HHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHHHHhc
Confidence                      14577 778774      4577788855443211 1111  124677777777665

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=1.4e-05  Score=60.49  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=80.6

Q ss_pred             ecCcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCC-CCeEE
Q 018045          253 TLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGS-FPTIL  331 (361)
Q Consensus       253 ~l~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~-~Pt~~  331 (361)
                      +++.+++...++   ++.++++.|+.+- ..-..+.+.+.++|+++++ ++.|+.+|.+.. .... +.|++.. .|.++
T Consensus         4 ei~~~~~~~y~~---~~~Pl~~~f~~~~-~~~~~~~~~~~~vAk~fkg-ki~Fv~~D~~~~-~~~l-~~fgl~e~~P~~~   76 (125)
T d2b5ea3           4 EIDGSVFAQYVE---SGLPLGYLFYNDE-EELEEYKPLFTELAKKNRG-LMNFVSIDARKF-GRHA-GNLNMKEQFPLFA   76 (125)
T ss_dssp             BCCHHHHHHHHH---TTSCEEEEEESSH-HHHHHHHHHHHHHHHHTTT-TCEEEEEEHHHH-TTHH-HHTTCCSCSSEEE
T ss_pred             ccCHHHHHHHHh---cCCCEEEEEeCCh-HHHHHHHHHHHHHHHHhcC-eeEEEEEchHHh-HHHH-HHcCCCccCCcEE
Confidence            578899999987   8999999999875 3456788999999999998 899999999988 7778 8898854 89999


Q ss_pred             EEeCCCCCeeecC------------CCCCCHHHHHHHHHHh
Q 018045          332 FFPKHSSKPIKYP------------SERRDVDSLMAFVDAL  360 (361)
Q Consensus       332 ~~~~g~~~~~~~~------------~~~~~~~~l~~~i~~~  360 (361)
                      +....+.....+.            .+..+.++|.+|++++
T Consensus        77 i~~~~~~~ky~~~~~~~~~~~~~~~~~e~t~~~i~~F~~d~  117 (125)
T d2b5ea3          77 IHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDF  117 (125)
T ss_dssp             EEETTTTEEEECCCCCHHHHHTCCSCCCCCHHHHHHHHHHH
T ss_pred             EEecccCcccccchhhhhhcccccccccCCHHHHHHHHHHH
Confidence            9865442122221            2368999999999875

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.10  E-value=9e-06  Score=68.46  Aligned_cols=93  Identities=19%  Similarity=0.275  Sum_probs=71.6

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC--------------------------chHHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD--------------------------QKEYAKQ  320 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~--------------------------~~~l~~~  320 (361)
                      .++.+|+.|| ++||+.|....+.+.++.+.++..++.++.|.+|..                          +..++ +
T Consensus        28 kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~Ds~~sh~~w~~~~~~~~~~~l~fpllsD~~~~va-k  106 (237)
T d2zcta1          28 QGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVDSVFSHIKWKEWIERHIGVRIPFPIIADPQGTVA-R  106 (237)
T ss_dssp             TTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHHHHHHHHCCCCCSCEEECGGGHHH-H
T ss_pred             CCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCCcHHHHHHHhhhhhhhcccccccccccCcchHHH-H
Confidence            5788888998 999999999999999999999877899999987642                          15678 7


Q ss_pred             cCCC-------CCCCeEEEEeCCCCC-ee-ecCC-CCCCHHHHHHHHHHhC
Q 018045          321 KLQL-------GSFPTILFFPKHSSK-PI-KYPS-ERRDVDSLMAFVDALR  361 (361)
Q Consensus       321 ~~~v-------~~~Pt~~~~~~g~~~-~~-~~~~-~~~~~~~l~~~i~~~~  361 (361)
                      .|++       ...|+++++...+.+ .+ .+.. ..++.+++.+.|+.|+
T Consensus       107 ~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr~l~aLQ  157 (237)
T d2zcta1         107 RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILRIVKALK  157 (237)
T ss_dssp             HTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHHh
Confidence            8988       468999999555432 22 2221 2368999999998764

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.00  E-value=2.1e-05  Score=62.07  Aligned_cols=93  Identities=13%  Similarity=0.248  Sum_probs=67.1

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++++||+|| +.||+.|....+.+++..+++...++.++.|..+..                           ...++ 
T Consensus        25 ~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~-  103 (158)
T d1zyea1          25 KGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVDSHFSHLAWINTPRKNGGLGHMNIALLSDLTKQIS-  103 (158)
T ss_dssp             TTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH-
T ss_pred             CCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCcCHHHHHHHHhhhHhhccccccccccccccccHHH-
Confidence            4788999999 999999999999999999999876788888887532                           14566 


Q ss_pred             HcCCCC------CCCeEEEE-eCCCCCeee-c-CCCCCCHHHHHHHHHHhC
Q 018045          320 QKLQLG------SFPTILFF-PKHSSKPIK-Y-PSERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~-~~g~~~~~~-~-~~~~~~~~~l~~~i~~~~  361 (361)
                      +.|++.      ..|+.+++ ++|+...+. + ..-.++.+++.+.|+.++
T Consensus       104 ~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~~lkalq  154 (158)
T d1zyea1         104 RDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRLVKAFQ  154 (158)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence            778775      34567777 444422111 1 111367899999998763

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=7.4e-06  Score=64.69  Aligned_cols=81  Identities=12%  Similarity=0.324  Sum_probs=60.2

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-------------------------------------  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-------------------------------------  310 (361)
                      ..+.+++.|+-+.||+|+.+.|.+.++.+.    ++.+..+..                                     
T Consensus        25 ~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  100 (156)
T d1eeja1          25 QEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAP  100 (156)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCC
T ss_pred             CCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----CceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccch
Confidence            567889999999999999999999988643    344443332                                     


Q ss_pred             -------CCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          311 -------DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       311 -------~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                             ..+ ..++ ++++|+++||++ +.+|+  .+  .| ..+.+.|.++|++.
T Consensus       101 ~~~~~~i~~~-~~la-~~lgv~GTPt~~-~~nG~--~v--~G-~~~~e~l~~~i~~~  149 (156)
T d1eeja1         101 ASCDVDIADH-YALG-VQLGVSGTPAVV-LSNGT--LV--PG-YQPPKEMKEFLDEH  149 (156)
T ss_dssp             CCCSCCHHHH-HHHH-HHHTCCSSSEEE-CTTSC--EE--ES-CCCHHHHHHHHHHH
T ss_pred             hhhcchHHHH-HHHH-HHcCCcCCCEEE-EeCCe--Ee--cC-CCCHHHHHHHHHHH
Confidence                   111 4677 789999999965 45676  33  34 78999999999874

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=97.88  E-value=1.1e-05  Score=64.50  Aligned_cols=91  Identities=13%  Similarity=0.231  Sum_probs=66.7

Q ss_pred             CCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHHH
Q 018045          269 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAKQ  320 (361)
Q Consensus       269 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~~  320 (361)
                      ++++++.|| +.||+.|....+.+++..+.++..++.++.|..+..                           +.+++ +
T Consensus        33 k~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~-~  111 (170)
T d1zofa1          33 KNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSIDSEQVHFAWKNTPVEKGGIGQVSFPMVADITKSIS-R  111 (170)
T ss_dssp             SSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCCCSSCEEECTTSHHH-H
T ss_pred             CCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEecccccchhhHHHHHhhhhhcccccCcccccccccccHHH-H
Confidence            457899999 999999999999999999999877899999987642                           14677 7


Q ss_pred             cCCCC-----CCCeEEEEeCCCCCe-eecC--CCCCCHHHHHHHHHHh
Q 018045          321 KLQLG-----SFPTILFFPKHSSKP-IKYP--SERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~-----~~Pt~~~~~~g~~~~-~~~~--~~~~~~~~l~~~i~~~  360 (361)
                      .|++.     ..|+.+++++.+... ..+.  ...++.+++.+.|++|
T Consensus       112 ~ygv~~~~~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         112 DYDVLFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             HTTCEETTTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHHHHHH
T ss_pred             HcCCCccccceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            88873     467788885554321 1211  1135788888888776

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.88  E-value=4.8e-05  Score=56.53  Aligned_cols=90  Identities=16%  Similarity=0.317  Sum_probs=66.4

Q ss_pred             CCCCcEEEEEEC--CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc-hHHHHHcCCCCCCCeEEEEeCCCCCeeec
Q 018045          267 HRQEPWLVVLYA--PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ-KEYAKQKLQLGSFPTILFFPKHSSKPIKY  343 (361)
Q Consensus       267 ~~~~~vlv~F~a--~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~-~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~  343 (361)
                      .-.++|-+.++.  +.|+.|..+...++++++.- + ++.+...+.+..+ .+++ ++|+|...|++.+..+|+..-+.|
T Consensus        19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-d-ki~~~~~~~~~~e~~~~~-~~~~ver~Ps~~i~~~g~~~gIrF   95 (119)
T d1a8la1          19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-D-KLSYEIVDFDTPEGKELA-KRYRIDRAPATTITQDGKDFGVRY   95 (119)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-T-TEEEEEEETTSHHHHHHH-HHTTCCSSSEEEEEETTBCCSEEE
T ss_pred             hCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhC-C-CeEEEEeccCcchhhhHH-HhhccccCceEEEecCCcccceEE
Confidence            346777666665  57999999999999997664 3 5888777776531 6788 899999999999998887545777


Q ss_pred             CCCCCCHHHHHHHHHHh
Q 018045          344 PSERRDVDSLMAFVDAL  360 (361)
Q Consensus       344 ~~~~~~~~~l~~~i~~~  360 (361)
                      .| --.=.++..||..+
T Consensus        96 ~G-iP~GhEf~SlilaI  111 (119)
T d1a8la1          96 FG-LPAGHEFAAFLEDI  111 (119)
T ss_dssp             ES-CCCTTHHHHHHHHH
T ss_pred             Ee-ccCchhHHHHHHHH
Confidence            76 33345666666543

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=3.5e-05  Score=60.33  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=62.9

Q ss_pred             CCcEEEEE-ECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCCC
Q 018045          269 QEPWLVVL-YAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQLG  325 (361)
Q Consensus       269 ~~~vlv~F-~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v~  325 (361)
                      .+++++.| ++.||+.|....+.+.++.+++...++.++.|..|..                      +..++ +.|++.
T Consensus        29 ~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~ygv~  107 (153)
T d1xvwa1          29 AKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVS-QAYGVF  107 (153)
T ss_dssp             TCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCCHHHHHHHHHHHTCCSCEEECTTTTTHHH-HHTTCE
T ss_pred             CCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccchhhhHHHHHhhhhccceeEEecccccchhH-HHhhhh
Confidence            34555554 4899999999999999999988776899998887643                      13566 778764


Q ss_pred             ------CCCeEEEEeCCCCCeeec---CCCCCCHHHHHHHHHHhC
Q 018045          326 ------SFPTILFFPKHSSKPIKY---PSERRDVDSLMAFVDALR  361 (361)
Q Consensus       326 ------~~Pt~~~~~~g~~~~~~~---~~~~~~~~~l~~~i~~~~  361 (361)
                            ..|++++++..+.+...+   .+..++..++.+.|..|.
T Consensus       108 ~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~~~L~aL~  152 (153)
T d1xvwa1         108 NEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWTDALAALT  152 (153)
T ss_dssp             ETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHHHHHHHTC
T ss_pred             hhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHHHHHHhhc
Confidence                  246777785443322121   123457888888888763

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.78  E-value=1.5e-05  Score=62.47  Aligned_cols=83  Identities=13%  Similarity=0.190  Sum_probs=59.6

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEc-------------------------------------
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRA-------------------------------------  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~-------------------------------------  310 (361)
                      ..+.+++.|+-+.||+|+++.+.+..+.+...  .+.+.....                                     
T Consensus        25 ~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~  102 (150)
T d1t3ba1          25 NEKHVVTVFMDITCHYCHLLHQQLKEYNDLGI--TVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVK  102 (150)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHTTE--EEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCC
T ss_pred             CCCEEEEEEECCCCHHHHHHhHHHHHHhccCc--eEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchh
Confidence            56678999999999999999999998875432  133332211                                     


Q ss_pred             -----CCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          311 -----DGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       311 -----~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                           ..+ ..++ ++++|+++||+++ .+|+    ...| ..+.+.|.+.|++-
T Consensus       103 ~~~~i~~~-~~la-~~lGv~GTPt~~~-~nG~----~i~G-~~~~~~l~~~l~~~  149 (150)
T d1t3ba1         103 TPNIVKKH-YELG-IQFGVRGTPSIVT-STGE----LIGG-YLKPADLLRALEET  149 (150)
T ss_dssp             CSSHHHHH-HHHH-HHHTCCSSCEEEC-TTSC----CCCS-CCCHHHHHHHHHHC
T ss_pred             hhhHHHHH-HHHH-HhcCcCCCCEEEE-cCCc----EecC-CCCHHHHHHHHHhh
Confidence                 011 4677 8999999998775 4565    2344 78999999999863

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.1e-05  Score=59.70  Aligned_cols=46  Identities=20%  Similarity=0.073  Sum_probs=41.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD  313 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~  313 (361)
                      +++.+||.++|+||++|.+..+.|+++.++|++.++.++.+-|+..
T Consensus        23 kGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF   68 (184)
T d2f8aa1          23 RGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQF   68 (184)
T ss_dssp             TTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCS
T ss_pred             CCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeecccc
Confidence            6899999999999999999999999999999876799999987653

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.72  E-value=8e-05  Score=60.18  Aligned_cols=93  Identities=14%  Similarity=0.134  Sum_probs=68.5

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------chHHHHHcC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------QKEYAKQKL  322 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------~~~l~~~~~  322 (361)
                      .++.++|+|| ++||+.|....+.|++..+++...++.++.|..|..                        +..++ ++|
T Consensus        29 kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~Ds~~sh~~f~~~~~~~~~~~fpllsD~~~~v~-~~y  107 (186)
T d1n8ja_          29 EGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALT-RNF  107 (186)
T ss_dssp             TTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESSCHHHHHHHHHHCTTGGGCCSEEEECTTSHHH-HHT
T ss_pred             CCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEeccccCHHHHHHHhccccccccccccccccHHHHHH-HHh
Confidence            5788999999 899999999999999999999876788888887653                        14577 788


Q ss_pred             CCC------CCCeEEEEeCCCCC-eee-cC-CCCCCHHHHHHHHHHhC
Q 018045          323 QLG------SFPTILFFPKHSSK-PIK-YP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       323 ~v~------~~Pt~~~~~~g~~~-~~~-~~-~~~~~~~~l~~~i~~~~  361 (361)
                      ++.      ..|+.++++..+.+ .+. +. .-.++++++.+.|+.++
T Consensus       108 Gv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~~lkaLQ  155 (186)
T d1n8ja_         108 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQ  155 (186)
T ss_dssp             TCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             CCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHHHHHHHH
Confidence            873      35778888554432 221 21 12478999998888763

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=97.71  E-value=9.3e-05  Score=50.16  Aligned_cols=72  Identities=18%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDS  352 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~  352 (361)
                      +..|..++|+.|..++..+.+    ..  ++.+..||++.+ +++. .+|+.. +|.+. +.++.  ...+   ..+.+.
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~~--~~~~~~vdI~~d-~~l~-~~y~~~-IPVl~-~~~~~--~l~w---~fd~~~   66 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----AR--AGAFFSVFIDDD-AALE-SAYGLR-VPVLR-DPMGR--ELDW---PFDAPR   66 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----TT--CCCEEEEECTTC-HHHH-HHHTTT-CSEEE-CTTCC--EEES---CCCHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh----cc--CCcEEEEEccCC-HHHH-HHhCCe-eeEEE-ECCee--EEcC---ccCHHH
Confidence            678899999999987655432    22  478999999999 9999 899876 89764 33333  3333   478999


Q ss_pred             HHHHHHH
Q 018045          353 LMAFVDA  359 (361)
Q Consensus       353 l~~~i~~  359 (361)
                      |.+||..
T Consensus        67 l~~~L~~   73 (75)
T d1ttza_          67 LRAWLDA   73 (75)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999974

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.66  E-value=0.00016  Score=57.69  Aligned_cols=41  Identities=22%  Similarity=0.478  Sum_probs=34.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFR  309 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd  309 (361)
                      ..++.||.|....||+|+.+.+.+.++.+.+.+ .+.+..+.
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~-~~~~~~~~   57 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPE-GAKFQKNH   57 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TCEEEEEE
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhccc-ccceeEEe
Confidence            467889999999999999999999999999876 55555543

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=0.00011  Score=58.47  Aligned_cols=83  Identities=14%  Similarity=0.228  Sum_probs=60.1

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC-----------------------------------
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD-----------------------------------  313 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~-----------------------------------  313 (361)
                      .+.+|+.|+-+.||+|+.+.+.++++.+..   .+.+..++..-.                                   
T Consensus        36 a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~~~~~~~~~~~  112 (169)
T d1v58a1          36 APVIVYVFADPFCPYCKQFWQQARPWVDSG---KVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGGKLKLNV  112 (169)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHTT---SEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHHHTTTCCCCCC
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHhcc---ceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHHHhhhcccccc
Confidence            446789999999999999999998887653   466666654210                                   


Q ss_pred             --------------chHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHH
Q 018045          314 --------------QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFV  357 (361)
Q Consensus       314 --------------~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i  357 (361)
                                    +..++ ++++|.++||+++.+.++. .....| ..+.+.|.+.|
T Consensus       113 ~~~~~~~~~~~i~~n~~~a-~~~gi~gTPt~i~~~~~g~-~~~~~G-~~~~~~l~~il  167 (169)
T d1v58a1         113 PANVSTEQMKVLSDNEKLM-DDLGANVTPAIYYMSKENT-LQQAVG-LPDQKTLNIIM  167 (169)
T ss_dssp             CSSCCHHHHHHHHHHHHHH-HHHTCCSSCEEEEEETTTE-EEEEES-SCCHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHHHHH-HhcCCCCCCEEEEECCCCC-EEEecC-CCCHHHHHHHh
Confidence                          03466 6889999999888765442 455555 67888887765

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00026  Score=57.65  Aligned_cols=93  Identities=13%  Similarity=0.234  Sum_probs=69.5

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++.++|.|| ++||+.|......+.+..++++..++.++.|.+|..                           +.+++ 
T Consensus        33 ~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~va-  111 (197)
T d1qmva_          33 KGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTRRLS-  111 (197)
T ss_dssp             TTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTCHHH-
T ss_pred             CCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecCCHHHHHhhhcchhhhcCcCCCccceEeccchHHH-
Confidence            4688999999 999999999999999999999887899999987642                           14677 


Q ss_pred             HcCCCC------CCCeEEEEeCCCCC-ee-ecC-CCCCCHHHHHHHHHHhC
Q 018045          320 QKLQLG------SFPTILFFPKHSSK-PI-KYP-SERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~------~~Pt~~~~~~g~~~-~~-~~~-~~~~~~~~l~~~i~~~~  361 (361)
                      +.|++.      .+|+.++++..+.+ .+ .+. .-.++.+++...|+.++
T Consensus       112 ~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr~l~alq  162 (197)
T d1qmva_         112 EDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRLVQAFQ  162 (197)
T ss_dssp             HHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHHHHHhhc
Confidence            788874      46778888654432 11 222 12478999999888763

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=0.00026  Score=56.28  Aligned_cols=44  Identities=27%  Similarity=0.550  Sum_probs=37.8

Q ss_pred             CCCcEEEEEECCCCh-hHHhhHHHHHHHHHHhcC--CCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLAG--NGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~-~C~~~~p~~~~la~~~~~--~~v~~~~vd~~  311 (361)
                      .+|++||.|+.+||+ .|..+.+.+.++.+.++.  .++.++.|.+|
T Consensus        30 ~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiD   76 (172)
T d1xzoa1          30 KGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVD   76 (172)
T ss_dssp             TTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred             CCCEEEEEEecccccccccccchhhhhhhhhhccccccccccccccc
Confidence            589999999999997 799999999999988854  36888888775

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.53  E-value=0.00028  Score=55.77  Aligned_cols=83  Identities=13%  Similarity=0.159  Sum_probs=60.7

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcC-CCeEEEEEEcCCC----------------------------------
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAG-NGVKVGKFRADGD----------------------------------  313 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~-~~v~~~~vd~~~~----------------------------------  313 (361)
                      .+..|+.|+...||+|+.+.+.+.++.+.+.. ..+.+..+.....                                  
T Consensus        24 a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (172)
T d1z6ma1          24 APVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESLQRGNVMHHYIDYSAPEQALSALHKMFATQD  103 (172)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECCCCSTTTHHHHHHHTTCCTTCHHHHHHHHHHHHHTHH
T ss_pred             CCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccccccchhhHHHHHHHHHHHHccchhHHHHHHHHHHhcc
Confidence            45569999999999999999999999988865 2455554443211                                  


Q ss_pred             -------------------------------chHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          314 -------------------------------QKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       314 -------------------------------~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                                                     ....+ ++++|.++||+++  +|+    .+.| ..+.++|.++|++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a-~~~gI~gTPt~~I--ng~----~~~g-~~~~~~~~~~id~  172 (172)
T d1z6ma1         104 EWGNLTLEEVATYAEKNLGLKEQKDATLVSAVIAEA-NAAHIQFVPTIII--GEY----IFDE-SVTEEELRGYIEK  172 (172)
T ss_dssp             HHTTSCHHHHHHHHHHTSCCCCCCCHHHHHHHHHHH-HHHTCCSSCEEEE--TTE----EECT-TCCHHHHHHHHTC
T ss_pred             ccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HHcCCCcCCEEEE--CCE----EecC-CCCHHHHHHHHcC
Confidence                                           01234 4689999999877  665    2455 7999999999874

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=97.50  E-value=9.7e-05  Score=58.85  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=66.8

Q ss_pred             CCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHHH
Q 018045          269 QEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAKQ  320 (361)
Q Consensus       269 ~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~~  320 (361)
                      ++++||.|| ++||+.|......|++..+.++..++.++.|..|..                           +..++ +
T Consensus        27 ~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D~~~~~~~~~~~~~~~~~~~~~~f~llsD~~~~~~-~  105 (170)
T d2h01a1          27 KKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIA-R  105 (170)
T ss_dssp             TCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSEEEECTTSHHH-H
T ss_pred             CCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCCcHHHHHhHhhhhhhhccccccCCceeEcCccHHH-H
Confidence            578999999 899999999999999999999877899999987732                           14667 7


Q ss_pred             cCCCC-----CCCeEEEEeCCCCCeeecCC---CCCCHHHHHHHHHHh
Q 018045          321 KLQLG-----SFPTILFFPKHSSKPIKYPS---ERRDVDSLMAFVDAL  360 (361)
Q Consensus       321 ~~~v~-----~~Pt~~~~~~g~~~~~~~~~---~~~~~~~l~~~i~~~  360 (361)
                      .|++.     ..++.+++..++.....+..   ..++.+++.+.|+.|
T Consensus       106 ~ygv~~~~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~~l~~l  153 (170)
T d2h01a1         106 SYDVLFNESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRLIDAL  153 (170)
T ss_dssp             HTTCEETTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHHHHHH
T ss_pred             HhCCccccccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            88772     34677777555432222211   134778888888775

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0013  Score=54.20  Aligned_cols=93  Identities=19%  Similarity=0.251  Sum_probs=68.4

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC------------------------------chH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD------------------------------QKE  316 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~------------------------------~~~  316 (361)
                      .++.+|+.|| ++||+.|......+++..+.++..++.++.|.+|..                              +.+
T Consensus        26 g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~Ds~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~  105 (220)
T d1prxa_          26 GDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSIDSVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRE  105 (220)
T ss_dssp             TTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCH
T ss_pred             CCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccccccchhhhhhhhhhccccccccCcccccccCcccH
Confidence            4678888888 889999999999999999999877888888877631                              156


Q ss_pred             HHHHcCCCC------------CCCeEEEEeCCCCC-ee-ecCC-CCCCHHHHHHHHHHhC
Q 018045          317 YAKQKLQLG------------SFPTILFFPKHSSK-PI-KYPS-ERRDVDSLMAFVDALR  361 (361)
Q Consensus       317 l~~~~~~v~------------~~Pt~~~~~~g~~~-~~-~~~~-~~~~~~~l~~~i~~~~  361 (361)
                      ++ +.|++-            ..+++++++..+.+ .. .+.. -.++.+++...|+.++
T Consensus       106 va-~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~gR~~dEiLr~l~alq  164 (220)
T d1prxa_         106 LA-ILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQ  164 (220)
T ss_dssp             HH-HHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHHHHHHHH
T ss_pred             HH-HHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcccchHHHHHHHHHHh
Confidence            77 788774            35778888544432 22 1221 1378999999888763

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.0002  Score=48.71  Aligned_cols=52  Identities=15%  Similarity=0.269  Sum_probs=41.1

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH--HcCCCCCCCeEEE
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK--QKLQLGSFPTILF  332 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~--~~~~v~~~Pt~~~  332 (361)
                      ++.|..+||++|..++..|.+.       ++.|..+|++.+ ++...  +..+.+++|++++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~~-------~i~y~~~~i~~~-~~~~~~~~~~g~~tvP~i~i   56 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMENR-------GFDFEMINVDRV-PEAAEALRAQGFRQLPVVIA   56 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTC-HHHHHHHHHTTCCSSCEEEE
T ss_pred             EEEEeCCCCccHHHHHHHHHhc-------CceeEEEeecCC-HHHHHHHHhcCCCCCCEEEE
Confidence            6788999999999999887553       588889999887 54331  4568999999876

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=97.30  E-value=0.00025  Score=47.87  Aligned_cols=68  Identities=15%  Similarity=0.223  Sum_probs=48.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCH
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDV  350 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~  350 (361)
                      ++.|..++|++|...+..|++.       ++.|..+|++.+.  .++. +.++..++|++++  +|+  .   .|| .++
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~~-------~i~~~~~~i~~~~~~~~~~-~~~g~~tvP~i~i--~g~--~---igG-f~~   66 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDRA-------GLAYNTVDISLDDEARDYV-MALGYVQAPVVEV--DGE--H---WSG-FRP   66 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETTTCHHHHHHH-HHTTCBCCCEEEE--TTE--E---EES-CCH
T ss_pred             EEEEeCCCChhHHHHHHHHHHc-------CCceEEEEccCCHHHHHHH-HHhCCCCcCEEEE--CCE--E---EeC-CCH
Confidence            6789999999999999877652       5888888988762  2344 5678999998754  554  2   232 556


Q ss_pred             HHHHHH
Q 018045          351 DSLMAF  356 (361)
Q Consensus       351 ~~l~~~  356 (361)
                      +.|.+.
T Consensus        67 d~l~~L   72 (74)
T d1r7ha_          67 ERIKQL   72 (74)
T ss_dssp             HHHHHH
T ss_pred             hHHHHh
Confidence            766653

>d1a8ya2 c.47.1.3 (A:127-228) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.23  E-value=0.0023  Score=45.78  Aligned_cols=92  Identities=16%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             ccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKH  336 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g  336 (361)
                      ++++.+++  ..+..++|-|+.+--+   .....|.++|+.+.+ ++.|+..   .+ .+++ +++++. .|++++|++=
T Consensus         8 ~e~~~F~~--~~d~v~VvGfF~~~~~---~~~~~F~~~A~~~rd-~~~F~~t---~d-~~va-~~~~v~-~~~vvlfr~f   75 (102)
T d1a8ya2           8 RELQAFEN--IEDEIKLIGYFKNKDS---EHYKAFKEAAEEFHP-YIPFFAT---FD-SKVA-KKLTLK-LNEIDFYEAF   75 (102)
T ss_dssp             HHHHHHTT--CCSSCEEEEECSSTTC---HHHHHHHHHHHHHTT-TSCEEEE---CC-HHHH-HHHCCC-TTCEEEECTT
T ss_pred             HHHHHHhc--cCCCEEEEEEECCCCc---HHHHHHHHHHHHcCC-CceEEEE---CC-HHHH-HHcCCC-CCCEEEeeec
Confidence            44666653  1356788888875422   356789999999976 7888865   34 7889 899995 8999999876


Q ss_pred             CCCeeecCCCCCCHHHHHHHHHHh
Q 018045          337 SSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       337 ~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      ......|.|...+.++|..||+.-
T Consensus        76 de~~~~~~~~~~t~~~i~~Fi~~n   99 (102)
T d1a8ya2          76 MEEPVTIPDKPNSEEEIVNFVEEH   99 (102)
T ss_dssp             CSSEEECSSSSCCHHHHHHHHHHT
T ss_pred             CCCceecCCCCCCHHHHHHHHHHh
Confidence            666888987568999999999864

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Hypothetical protein PH1257
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.19  E-value=0.00012  Score=60.78  Aligned_cols=126  Identities=17%  Similarity=0.230  Sum_probs=70.5

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceE-EEccCC---C--CcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRV-FSLDTG---R--LNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKG   82 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v-~~~dtg---~--~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~   82 (361)
                      .+|+|+|||||||++. +++.+.+.++.. ++.-..   .  ..-...+.++..++.+|+++........          
T Consensus         4 ~~V~vl~SGGKDS~lAl~~a~~~G~eV~~L~t~~~~~~~s~~~h~~~~~ll~~qAealgiPl~~~~~~~~----------   73 (226)
T d2d13a1           4 ADVAVLYSGGKDSNYALYWALKSGLRVRYLVSMVSENEESYMYHTPNVELTSLQARALGIPIIKGFTKGE----------   73 (226)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHTTCEEEEEEEEECCC---------CCTTHHHHHHHHTCCEEEEEC--C----------
T ss_pred             eeEEEEecCcHHHHHHHHHHHHcCCeeEEEEEEecCCCCcCcccCCCHHHHHHHHHhcCCCceEEecCCc----------
Confidence            4799999999999866 888888876653 333221   1  1122345688889999999876532211          


Q ss_pred             CCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHH
Q 018045           83 LFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGN  160 (361)
Q Consensus        83 ~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~  160 (361)
                                   ....++-+.++++  +.+.+++|-=..+-  +|......-..          -++..+.||..-..+
T Consensus        74 -------------~e~~~~~l~~~l~~~~v~~vv~Gdi~~~~--~r~r~e~~c~~----------~gl~~~~PLW~~d~~  128 (226)
T d2d13a1          74 -------------KEKEVEDLKNVLEGLKVDGIVAGALASRY--QKERIENVARE----------LGLKVYTPAWEKDPY  128 (226)
T ss_dssp             -------------TTSHHHHHHHHHHTBCCSEEECCCSSCHH--HHHHHHHHHHH----------HTCEEECTTTTCCHH
T ss_pred             -------------chHHHHHHHHHHHhcCccceEecceecHH--HHHHHHhhHHh----------cCcEEEecccCCCHH
Confidence                         0111122333333  34566666544442  33322111101          145678999888888


Q ss_pred             HHHHHHHhCC
Q 018045          161 DIWNFLRTMD  170 (361)
Q Consensus       161 dv~~yi~~~~  170 (361)
                      ++..=+...|
T Consensus       129 ~ll~e~i~~G  138 (226)
T d2d13a1         129 QYMLEIIKLG  138 (226)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHCC
Confidence            8766555544

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0016  Score=50.39  Aligned_cols=91  Identities=9%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             CCCcEEEEEECCCCh-hHHhhHHHHHHHHHHhcC----CCeEEEEEEcCCC--c-------------------------h
Q 018045          268 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLAG----NGVKVGKFRADGD--Q-------------------------K  315 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~-~C~~~~p~~~~la~~~~~----~~v~~~~vd~~~~--~-------------------------~  315 (361)
                      .+|++||.|+.+||+ .|..+.+.+.++.+.+..    ..+.+..+..+..  .                         .
T Consensus        19 ~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (160)
T d1wp0a1          19 LGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVD   98 (160)
T ss_dssp             TTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHHTTCTTCEEEECCHHHHH
T ss_pred             CCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHhhcCCCcccccCchHHhh
Confidence            689999999999996 799999999998888754    1344444444321  0                         1


Q ss_pred             HHHHHcCCCC---------------CCCeEEEEeCCCCCeeecCCCCCCHHHHHHHHHHh
Q 018045          316 EYAKQKLQLG---------------SFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDAL  360 (361)
Q Consensus       316 ~l~~~~~~v~---------------~~Pt~~~~~~g~~~~~~~~~~~~~~~~l~~~i~~~  360 (361)
                      .+. ..|++.               ..++++++...+. .+.+-++..+++++.+-|+++
T Consensus        99 ~~~-~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~-i~~~~~~~~~~~~i~~~I~~~  156 (160)
T d1wp0a1          99 QVA-RAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGE-FLDYFGQNKRKGEIAASIATH  156 (160)
T ss_dssp             HHH-HHTTCCEEECCCCGGGCCCEEECCEEEEECTTSC-EEEEEETTCCHHHHHHHHHHH
T ss_pred             HHh-hhhheeeecccCCCCCCceEeccceEEEECCCCc-EEEEECCCCCHHHHHHHHHHH
Confidence            233 444433               3467788854433 343334467888888777654

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.18  E-value=0.00061  Score=53.59  Aligned_cols=90  Identities=11%  Similarity=0.174  Sum_probs=59.5

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v  324 (361)
                      .++.++|.|| +.||+.|....+.+.+...++++  +.++.|..+..                      +..+. +.|++
T Consensus        41 ~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~~--~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ygv  117 (163)
T d1psqa_          41 DGKKKVLSVVPSIDTGICSTQTRRFNEELAGLDN--TVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFG-RDYAL  117 (163)
T ss_dssp             TTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCTT--EEEEEEESSCHHHHHHHHHHHTCTTSEEEECTTTCHHH-HHHTC
T ss_pred             CCcEEEEEeccccccccchhhHHHHHHHHHhhcc--cceEEEEeccHHHHHHHHHHcCCcceeeeccccchhHH-Hhhee
Confidence            5788888888 78999999999999888777754  78888876532                      02455 66776


Q ss_pred             CC--C----CeEEEEe-CCCCCeeecC---CCCCCHHHHHHHHHHh
Q 018045          325 GS--F----PTILFFP-KHSSKPIKYP---SERRDVDSLMAFVDAL  360 (361)
Q Consensus       325 ~~--~----Pt~~~~~-~g~~~~~~~~---~~~~~~~~l~~~i~~~  360 (361)
                      ..  .    +++++++ +|+.....+.   +...+.+++.+.|++|
T Consensus       118 ~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~il~alk~L  163 (163)
T d1psqa_         118 LINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKAL  163 (163)
T ss_dssp             BCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHHHHHHHHC
T ss_pred             ecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHHHHHHHhcC
Confidence            32  2    3566775 5542111111   1234678888888875

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.17  E-value=0.00079  Score=45.35  Aligned_cols=73  Identities=15%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             EEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCCCCHHHH
Q 018045          274 VVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSL  353 (361)
Q Consensus       274 v~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~~~~~~l  353 (361)
                      |....+.|+.|..+....+++++++.- ...+.+|  +.. .++.  +|+|-++|.+++  +|+   +.+.|...+.+++
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~gi-~a~v~kv--~d~-~ei~--~ygVmstPalvI--dg~---vv~~G~vPs~~ei   72 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKI--KEM-DQIL--EAGLTALPGLAV--DGE---LKIMGRVASKEEI   72 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEE--CSH-HHHH--HHTCSSSSCEEE--TTE---EEECSSCCCHHHH
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcCC-ceEEEEe--CCH-HHHH--HcCCcCCCEEEE--CCE---EEEEecCCCHHHH
Confidence            445589999999999999999988753 5566555  455 6766  599999999877  565   5566645699999


Q ss_pred             HHHH
Q 018045          354 MAFV  357 (361)
Q Consensus       354 ~~~i  357 (361)
                      .++|
T Consensus        73 ~~~L   76 (77)
T d1iloa_          73 KKIL   76 (77)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            9886

>d1bjxa_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0014  Score=47.76  Aligned_cols=90  Identities=13%  Similarity=0.270  Sum_probs=68.7

Q ss_pred             CcccHHHHHhhcCCCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEe
Q 018045          255 NRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFP  334 (361)
Q Consensus       255 ~~~~f~~~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~  334 (361)
                      +...+++++.   .+..++|-|+.+-   -......|.++|+.+.+  +.|+.+.   + .+++ +.+++.. |++++|+
T Consensus         7 ~~~~~e~f~~---~~~v~VVGfF~~~---~~~~~~~F~~~A~~~~d--~~F~~t~---~-~~v~-~~~~v~~-~~Ivl~k   72 (110)
T d1bjxa_           7 DGAAAESLVE---SSEVAVIGFFKDV---ESDSAKQFLQAAEAIDD--IPFGITS---N-SDVF-SKYQLDK-DGVVLFK   72 (110)
T ss_dssp             SHHHHHHHHH---HSSEEEEEECTTT---TSHHHHHHHHHHHHCSS--SCEEEEC---C-SHHH-HHTTCSS-CEEEEEE
T ss_pred             CHHHHHHHhc---cCCeEEEEEEcCC---CchHHHHHHHHHHhCcC--ceEEEEC---C-HHHH-HHcCCCC-CeEEEec
Confidence            3456777776   7888899998764   33456789999999854  7777643   3 5778 8999965 9999999


Q ss_pred             CCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          335 KHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      +.......+.+ ..+.++|.+||+.
T Consensus        73 ~~de~~~~~~~-~~~~~~l~~fi~~   96 (110)
T d1bjxa_          73 KFDEGRNNFEG-EVTKENLLDFIKH   96 (110)
T ss_dssp             SSSSSBCCCCS-CCCHHHHHHHHHH
T ss_pred             cCCccccccCC-CCCHHHHHHHHHH
Confidence            87765666655 7999999999975

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00018  Score=50.14  Aligned_cols=74  Identities=14%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHc--CCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQK--LQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~--~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      +|.|..++|++|.+.+..|.++...+++  +.+..+|++.+.   ..+. +.  .+++++|.+++  +|+  .   .||.
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~~~~~~~~~~~~~~-~~~~~~~~tvPqIfi--~g~--~---IGG~   72 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIRAEGITKEDLQ-QKAGKPVETVPQIFV--DQQ--H---IGGY   72 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHHHHTCCSHHHH-HHTCCCSCCSCEEEE--TTE--E---EESS
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEEecCCCHHHHHHHH-HHhcCCCCCCCEEEE--CCE--E---EECH
Confidence            6889999999999999999999988876  888888875441   3343 33  34578999655  555  2   2432


Q ss_pred             CCHHHHHHHHHH
Q 018045          348 RDVDSLMAFVDA  359 (361)
Q Consensus       348 ~~~~~l~~~i~~  359 (361)
                         ++|.+++++
T Consensus        73 ---~el~~~~~~   81 (85)
T d1egoa_          73 ---TDFAAWVKE   81 (85)
T ss_dssp             ---HHHHHHHHH
T ss_pred             ---HHHHHHHHh
Confidence               567777653

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.00  E-value=0.0006  Score=58.24  Aligned_cols=146  Identities=14%  Similarity=0.142  Sum_probs=70.9

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc--------CCC-ceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHH--
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT--------GRP-FRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQAL--   77 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~--------~~~-i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~--   77 (361)
                      ..++|+.|||-||.++ .|+.+.        ++. +..+.+-...  ++..+-.+..++.++....+.-+-...+..+  
T Consensus        39 ~gvvvglSGGIDSAv~a~L~~~A~~~~~~~~g~~~v~~v~mP~~~--~~~~~~a~~~~~~~~~~~~~~i~I~~~~~~~~~  116 (271)
T d1kqpa_          39 KGFVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHGT--QQDEDDAQLALKFIKPDKSWKFDIKSTVSAFSD  116 (271)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSSS--CTTHHHHHHHHHHHCCSEEEECCCHHHHHHHHH
T ss_pred             CeEEEECCCCHHHHHHHHHHHHHHHHHHHhcCCceeeeeecCccc--cchhhhHHHHHHHhccccceEEeehHHHHhHHH
Confidence            6899999999999765 454442        333 4445554332  2334556778888887654322222222222  


Q ss_pred             -HHhc-CCCCCCccchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEee
Q 018045           78 -VRSK-GLFSFYEDGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP  153 (361)
Q Consensus        78 -~~~~-~~~~~~~~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~P  153 (361)
                       .... +.. ...-........+++..+..+..  +.-++-||-+.+-..    ..-     .+|+      .+..-++|
T Consensus       117 ~~~~~~~~~-~~~~~~~NiqaRiR~~~Ly~~An~~g~lvlgTgNksE~~~----Gy~-----TkyG------D~~~di~P  180 (271)
T d1kqpa_         117 QYQQETGDQ-LTDFNKGNVKARTRMIAQYAIGGQEGLLVLGTDHAAEAVT----GFF-----TKYG------DGGADLLP  180 (271)
T ss_dssp             HHHHHHSCC-CCHHHHHHHHHHHHHHHHHHHHHHHTCEEBCCCCHHHHTT----TCS-----CTTT------TTCCSBCT
T ss_pred             HHHHhhhcc-ccchhccccccccccchhHHhHhhcCCccCCCcchhhhhc----chh-----hhhh------hccchhcc
Confidence             1111 110 00000001111112222222222  322444554432221    111     1111      11234899


Q ss_pred             CccCcHHHHHHHHHhCCCCC
Q 018045          154 VANVKGNDIWNFLRTMDVPI  173 (361)
Q Consensus       154 i~~W~~~dv~~yi~~~~lp~  173 (361)
                      |.+.+..||++..+..++|-
T Consensus       181 i~dL~K~eV~~La~~lgip~  200 (271)
T d1kqpa_         181 LTGLTKRQGRTLLKELGAPE  200 (271)
T ss_dssp             TTTCCHHHHHHHHHHTTCCT
T ss_pred             ccccCHHHHHHHHHhhhhcc
Confidence            99999999999999988764

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00068  Score=53.35  Aligned_cols=67  Identities=13%  Similarity=0.183  Sum_probs=49.3

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC----------------------chHHHHHcCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD----------------------QKEYAKQKLQL  324 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~----------------------~~~l~~~~~~v  324 (361)
                      .+|+++|.|| +.||+.|....|.|++++.++.  ++.++.|..+..                      +.+++ +.|++
T Consensus        43 ~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~ygv  119 (164)
T d1qxha_          43 AGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISADLPFAQSRFCGAEGLNNVITLSTFRNAEFL-QAYGV  119 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESSCHHHHTTCCSSTTCTTEEEEECTTCHHHH-HHTTC
T ss_pred             CCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcCCHHHHHHHHHHhCCCcceeeccccchhhH-HhcCe
Confidence            5788888888 7799999999999999988775  477877765431                      15677 77876


Q ss_pred             C---------CCCeEEEEeCCC
Q 018045          325 G---------SFPTILFFPKHS  337 (361)
Q Consensus       325 ~---------~~Pt~~~~~~g~  337 (361)
                      .         ..|++++++..+
T Consensus       120 ~~~~~~~~g~~~ra~fvID~~G  141 (164)
T d1qxha_         120 AIADGPLKGLAARAVVVIDEND  141 (164)
T ss_dssp             BBCSSTTTTSBCCEEEEECTTS
T ss_pred             EeecCcccCcccCEEEEEcCCC
Confidence            3         236788885444

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.95  E-value=0.00083  Score=46.17  Aligned_cols=55  Identities=16%  Similarity=0.382  Sum_probs=40.7

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---hHHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---KEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      +..|..+||++|.+.+..|++.       ++.|..+|++.+.   ..+. +..+..++|.+++  +|+
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~-------~i~y~~~di~~~~~~~~~~~-~~~g~~tvP~i~i--~~~   60 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPIDGNAAKREEMI-KRSGRTTVPQIFI--DAQ   60 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECTTCSHHHHHHH-HHHSSCCSCEEEE--TTE
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc-------CCCeEEEeccchHHHHHHHH-HHhCCCCCCeEEE--CCE
Confidence            6778899999999998877654       5788888888762   2334 4558889998754  554

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.0014  Score=43.99  Aligned_cols=55  Identities=13%  Similarity=0.271  Sum_probs=40.3

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc--hHHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ--KEYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~--~~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|..++|++|++++..|++.       ++.|..+|++.+.  ..+. +..+..++|.+++  +|+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~-------~i~~~~~~v~~~~~~~~~~-~~~~~~tvP~i~i--~g~   63 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK-------GLSFEEIILGHDATIVSVR-AVSGRTTVPQVFI--GGK   63 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEETTTTCCHHHHH-HHTCCSSSCEEEE--TTE
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------CCCeEEEEccCcHHHHHHH-HHhCCccCCEEEE--CCE
Confidence            6889999999999999887764       4667777776552  3344 5678889999744  554

>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ThiI-like
domain: Hypothetical protein PH1313, C-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.80  E-value=0.00095  Score=50.22  Aligned_cols=125  Identities=7%  Similarity=0.002  Sum_probs=75.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHHHHHhcCCCCCCc
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE   88 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~~~~~~~~~~~~~   88 (361)
                      +++++-+|||- |-|. .++.+.|.++..+|.+|+   +++.+-+.++.+.+.                  ++..    .
T Consensus         5 Gk~l~LlSGGi-SpVAa~lmmkRG~~V~~v~f~~~---~~~~ekv~~l~~~L~------------------~y~~----~   58 (132)
T d1vbka1           5 GRMIGILHDEL-SALAIFLMMKRGVEVIPVYIGKD---DKNLEKVRSLWNLLK------------------RYSY----G   58 (132)
T ss_dssp             CEEEEECSSHH-HHHHHHHHHHBTCEEEEEEESCS---SHHHHHHHHHHHHHH------------------TTCT----T
T ss_pred             ceEEEeecCCc-hHHHHHHHHHCCCEEEEEEEcCC---HHHHHHHHHHHHHHH------------------HhCC----C
Confidence            57889999999 7655 899999999988888887   456666666666551                  1110    0


Q ss_pred             cchhchhhccccHHHHHHHc--cCCEEEEeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEeeCccCcHHHHHHHH
Q 018045           89 DGHQECCRVRKVRPLRRALK--GLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFL  166 (361)
Q Consensus        89 ~~~~~cc~~~K~~pl~~~~~--~~~~~i~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~Pi~~W~~~dv~~yi  166 (361)
                      .....|+-..+ +-+.+..+  +.+..+||...++- ++ ...+..+...   .     -...-++||+.|+++||-+..
T Consensus        59 ~~~~~~v~~~~-~~~~riA~~~~a~~ivtG~~~e~v-gq-vasqt~~~~~---~-----~~~pIlRPLi~~DK~EIi~~A  127 (132)
T d1vbka1          59 SKGFLVVAESF-DRVLKLIRDFGVKGVIKGLRPNDL-NS-EVSEITEDFK---M-----FPVPVYYPLIALPEEYIKSVK  127 (132)
T ss_dssp             SCCCCEEESSH-HHHHHHHHHHTCCEEECCCCGGGC-CT-TCHHHHHHHH---H-----CSSCEECHHHHSCHHHHHHHH
T ss_pred             CCcEEEEeeHH-HHHHHHHHHhhhhceEEEEeccch-hh-HHHHHHHHHh---c-----cccccccCcCCCCHHHHHHHH
Confidence            11122222222 22333333  56789999855443 22 2212211110   0     013368999999999999998


Q ss_pred             HhCCC
Q 018045          167 RTMDV  171 (361)
Q Consensus       167 ~~~~l  171 (361)
                      ++-|+
T Consensus       128 r~IGl  132 (132)
T d1vbka1         128 ERLGL  132 (132)
T ss_dssp             HHHTC
T ss_pred             HHhCc
Confidence            87654

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.80  E-value=0.00045  Score=50.06  Aligned_cols=61  Identities=21%  Similarity=0.388  Sum_probs=42.7

Q ss_pred             EEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCch---HHHHHcCCCCCCCeEEEEeCCC
Q 018045          273 LVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQK---EYAKQKLQLGSFPTILFFPKHS  337 (361)
Q Consensus       273 lv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~---~l~~~~~~v~~~Pt~~~~~~g~  337 (361)
                      ++.|..+|||+|...+..|.++.-.+.  .+.+..+|.+.+..   +...+..+..++|.+++  +|+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~~--~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi--~g~   77 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKEG--LLEFVDITATSDTNEIQDYLQQLTGARTVPRVFI--GKE   77 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCTT--SEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEE--TTE
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCccc--eeeeeecccccccHHHHHHHhhccCCCcCcEEEE--CCE
Confidence            779999999999999998887654443  37788888776521   12213447788998754  565

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0034  Score=49.98  Aligned_cols=43  Identities=19%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcC--CCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAG--NGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~--~~v~~~~vd~  310 (361)
                      .+++.||.|+.-.||+|+.+.+.+..+.+..+.  ..+.|.....
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~   61 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHV   61 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEEC
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEec
Confidence            356789999999999999999987655543332  2566666654

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.58  E-value=0.0031  Score=49.50  Aligned_cols=88  Identities=13%  Similarity=0.135  Sum_probs=54.9

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc---------------------hHHHHHcCCCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ---------------------KEYAKQKLQLG  325 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~---------------------~~l~~~~~~v~  325 (361)
                      .++++|+.|| +.||+.|....+.+++..+..   ++.++.|..+...                     ..+. +.|++.
T Consensus        42 ~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~~---g~~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~  117 (166)
T d1xvqa_          42 RGKSVLLNIFPSVDTPVCATSVRTFDERAAAS---GATVLCVSKDLPFAQKRFCGAEGTENVMPASAFRDSFG-EDYGVT  117 (166)
T ss_dssp             TTSCEEEEECSCCCSSCCCHHHHHHHHHHHHT---TCEEEEEESSCHHHHTTCC------CEEEEECTTSSHH-HHTTCB
T ss_pred             CCcEEEEEeeecccccccHHHHHHHhhhcccc---cccccccccchHHHHHHHHHHhCCcccccccchhHHHH-HHhCee
Confidence            5789999999 558888999988887766554   4677777665420                     2344 455542


Q ss_pred             ---------CCCeEEEEe-CCCCCeeec---CCCCCCHHHHHHHHHH
Q 018045          326 ---------SFPTILFFP-KHSSKPIKY---PSERRDVDSLMAFVDA  359 (361)
Q Consensus       326 ---------~~Pt~~~~~-~g~~~~~~~---~~~~~~~~~l~~~i~~  359 (361)
                               ..|++++++ +|+.....+   .+...+.+++.+.|+.
T Consensus       118 ~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d~il~aL~a  164 (166)
T d1xvqa_         118 IADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYEAALAALGA  164 (166)
T ss_dssp             BCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHHHHHHHHHH
T ss_pred             eccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence                     236777785 444211111   1223477888877765

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.0045  Score=48.38  Aligned_cols=43  Identities=16%  Similarity=0.132  Sum_probs=35.6

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG  312 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~  312 (361)
                      .+|.+++.|| +.||+.|....+.|++..+++++  +.++.|.++.
T Consensus        41 ~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~~--~~vi~iS~d~   84 (164)
T d1q98a_          41 ASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLSN--TIVLCISADL   84 (164)
T ss_dssp             TTSEEEEEECSCSCSSCCCHHHHHHHHHHHHSTT--EEEEEEESSC
T ss_pred             CCcEEEEEecCccccCcccHHHHHHHHHHHHhcc--ceEEeecCCc
Confidence            4678999999 56888899999999999999864  7888887653

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=96.35  E-value=0.0081  Score=49.17  Aligned_cols=93  Identities=13%  Similarity=0.273  Sum_probs=68.3

Q ss_pred             CCCcEEEEEE-CCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCC---------------------------chHHHH
Q 018045          268 RQEPWLVVLY-APWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGD---------------------------QKEYAK  319 (361)
Q Consensus       268 ~~~~vlv~F~-a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~---------------------------~~~l~~  319 (361)
                      .++.+|+.|| ++||+.|......|.+..+.++..++.++.|.+|..                           +..++ 
T Consensus        29 ~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~Ds~~sh~~w~~~~~~~~~~~~l~fpllsD~~~~va-  107 (219)
T d1xcca_          29 ENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCNSKESHDKWIEDIKYYGKLNKWEIPIVCDESRELA-  107 (219)
T ss_dssp             TTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHHTCSCCCCCEEECTTSHHH-
T ss_pred             CCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCccHhHHhHHhhhhHhhcccCCCCcccccccccHHH-
Confidence            5788999999 999999999999999999999877899999987642                           13577 


Q ss_pred             HcCCCC------------CCCeEEEEeCCCCC-ee-ecCC-CCCCHHHHHHHHHHhC
Q 018045          320 QKLQLG------------SFPTILFFPKHSSK-PI-KYPS-ERRDVDSLMAFVDALR  361 (361)
Q Consensus       320 ~~~~v~------------~~Pt~~~~~~g~~~-~~-~~~~-~~~~~~~l~~~i~~~~  361 (361)
                      +.|++-            ..-++++++..+.+ .. .+.. -.++.+++...|+.++
T Consensus       108 ~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EiLr~l~aLQ  164 (219)
T d1xcca_         108 NKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNAHEILRVLKSLQ  164 (219)
T ss_dssp             HHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHHHHHH
T ss_pred             HHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCHHHHHHHHHHHH
Confidence            777772            12367777555432 12 2221 2478999999998764

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: NH3-dependent NAD+-synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.0036  Score=53.26  Aligned_cols=148  Identities=11%  Similarity=0.113  Sum_probs=72.0

Q ss_pred             CcEEEEecchHHHHHH-HHHHHc--------C-C--CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC--hHHHH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLT--------G-R--PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD--AVEVQ   75 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~--------~-~--~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~--~~~~~   75 (361)
                      ..++|+.|||-||+++ .|+.+.        + .  ++..+.+-.+...+ ..+..+.++...+..+..+.-.  ...+.
T Consensus        40 k~vVvGlSGGIDSav~A~L~~~Alg~~~v~~g~~~~~~i~v~mp~~~~~~-~~d~~~~~~~~~~~~~~~i~i~~~~~~~~  118 (274)
T d1wxia1          40 KSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQAD-EQDCQDAIAFIQPDRVLTVNIKGAVLASE  118 (274)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTT-HHHHHHHHHHHCCSEEEECCCHHHHHHHH
T ss_pred             CeEEEECCCCHHHHHHHHHHHHHHHHHhhhhccccceEEEEecCCcccch-HHHHHHHHHhhcCccccccccchHHHHHH
Confidence            4699999999999877 666652        1 1  23345554443322 3344555666667666543211  11222


Q ss_pred             HHHHhcCCCCCCccchhchhhccccHHHHHHHccCCEEE--EeeeccCCccCccCCCceecCCCCcCCcCCCCCeEEEee
Q 018045           76 ALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWI--TGQRKDQSPGTRSEIPVVQVDPVFEGLEGGVGSLVKWNP  153 (361)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~cc~~~K~~pl~~~~~~~~~~i--~G~R~~Es~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~P  153 (361)
                      ......+... ..-.........++.-+..+.......+  ||-+ +|..   ...-.     +|+      .+..-+.|
T Consensus       119 ~~l~~~~~~~-~~~~~~N~~aRiR~~~ly~~A~~~~~lVlgTgNk-sE~~---~Gy~T-----kyG------D~~~di~P  182 (274)
T d1wxia1         119 QALREAGIEL-SDFVRGNEKARERMKAQYSIAGMTSGVVVGTDHA-AEAI---TGFFT-----KYG------DGGTDINP  182 (274)
T ss_dssp             HHHHHHTCCC-CHHHHHHHHHHHHHHHHHHHHHHTTEEEBCCCCH-HHHT---TTCSC-----TTT------TTCCSBCT
T ss_pred             Hhhhhccccc-CcccccchhHHHHHHHHHHHHHhcCCcCCCCCCc-cccc---ccccc-----ccc------ccchhHhh
Confidence            2222223211 0001111222222322222333334333  4432 2321   11111     111      12234899


Q ss_pred             CccCcHHHHHHHHHhCCCCCC
Q 018045          154 VANVKGNDIWNFLRTMDVPIN  174 (361)
Q Consensus       154 i~~W~~~dv~~yi~~~~lp~~  174 (361)
                      |.++...||++..+..+||-+
T Consensus       183 l~~L~K~eV~~La~~l~iP~~  203 (274)
T d1wxia1         183 LYRLNKRQGKQLLAALACPEH  203 (274)
T ss_dssp             TTTCCHHHHHHHHHHTTCCGG
T ss_pred             hcccchHHHHHHHHHHhhccc
Confidence            999999999999999887653

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]

Probab=96.03  E-value=0.0037  Score=53.99  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChHHHHH----HHHhcCCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQA----LVRSKGLF   84 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~~~~~----~~~~~~~~   84 (361)
                      .+|-+.+|||-||+++ .++.+...++..+.+... ..++ .++++++++.+|++++++......+..    .+.....+
T Consensus        34 ~~VGv~LSGGlDSslia~~~~~~~~~~~tfs~~~~-~~~e-~~~A~~va~~l~~~h~~i~~~~~~~~~~l~~~i~~~e~~  111 (296)
T d1q15a1          34 DTVGIPLSGGLDSSLVTALASRHFKKLNTYSIGTE-LSNE-FEFSQQVADALGTHHQMKILSETEVINGIIESIYYNEIF  111 (296)
T ss_dssp             SEEEEECCSSHHHHHHHHHHTTTCSEEEEEEEEET-TBCC-HHHHHHHHHHHTCEEEEEEECHHHHHHHHHHHHHHHCCC
T ss_pred             CEEEEEccCcHHHHHHHHHHHhcCCCCceEEeccC-CCch-HHHHHHHHhhccccceEEEeeehhhhccchhhhhccccc
Confidence            5799999999999877 777777777776665443 2333 357999999999998776555433322    22222221


Q ss_pred             CCCccchhchhhccccHHHHHHH-ccCCEEEEeeeccCC
Q 018045           85 SFYEDGHQECCRVRKVRPLRRAL-KGLRAWITGQRKDQS  122 (361)
Q Consensus        85 ~~~~~~~~~cc~~~K~~pl~~~~-~~~~~~i~G~R~~Es  122 (361)
                      .+  .....+...   ..+.+.. ++.+++++|.=+||-
T Consensus       112 ~~--~~~~~~~~~---~~l~k~a~~~~kV~lsG~GaDEl  145 (296)
T d1q15a1         112 DG--LSAEIQSGL---FNVYRQAQGQVSCMLTGYGSDLL  145 (296)
T ss_dssp             CH--HHHHHHHHH---HHHHHHHBTTBSEEECCTTHHHH
T ss_pred             cc--cchhhhhhh---hhhhcccccccceeeecCCcccc
Confidence            10  011111111   1222222 356799999888884

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.041  Score=41.90  Aligned_cols=43  Identities=7%  Similarity=-0.014  Sum_probs=27.6

Q ss_pred             CCCcEEEEEECCCCh-hHHhhHHHHHHHHHHhcC---CCeEEEEEEc
Q 018045          268 RQEPWLVVLYAPWCQ-FCQAMEGSYVELADKLAG---NGVKVGKFRA  310 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~-~C~~~~p~~~~la~~~~~---~~v~~~~vd~  310 (361)
                      .+|.+||.|+.+||+ .|..+...+..+...+..   ..+.+..+..
T Consensus        25 ~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (169)
T d2b7ka1          25 LGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITC   71 (169)
T ss_dssp             TTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEES
T ss_pred             CCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeecc
Confidence            689999999999996 455555555555555433   2445554443

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.35  E-value=0.02  Score=41.19  Aligned_cols=66  Identities=15%  Similarity=0.311  Sum_probs=43.4

Q ss_pred             ccHHHHHhhcCCCCcEEEEEEC-----CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHH---HcCCCCCCC
Q 018045          257 TGMENLARLDHRQEPWLVVLYA-----PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAK---QKLQLGSFP  328 (361)
Q Consensus       257 ~~f~~~~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~---~~~~v~~~P  328 (361)
                      ...+.+++    +.+|+| |..     |.|++|.+++..|..+       ++.|..+|++.. .++..   +..+...+|
T Consensus         6 ~~i~~~i~----~~~Vvv-F~Kgt~~~p~Cp~c~~ak~lL~~~-------~i~~~~~~v~~~-~~~~~~l~~~t~~~TvP   72 (109)
T d1wika_           6 SGLKVLTN----KASVML-FMKGNKQEAKCGFSKQILEILNST-------GVEYETFDILED-EEVRQGLKTFSNWPTYP   72 (109)
T ss_dssp             CCHHHHHT----TSSEEE-EESSTTTCCCSSTHHHHHHHHHHT-------CSCEEEEESSSC-HHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHh----cCCEEE-EeCCCCCCCCChHHHHHHHHHHhc-------CCCceEEEeccc-HHHHHHHHHhcCCCCCC
Confidence            34556663    444444 654     8899999999877543       477888888887 43320   344678899


Q ss_pred             eEEEEeCCC
Q 018045          329 TILFFPKHS  337 (361)
Q Consensus       329 t~~~~~~g~  337 (361)
                      .+++  +|+
T Consensus        73 qIFi--~g~   79 (109)
T d1wika_          73 QLYV--RGD   79 (109)
T ss_dssp             EEEC--SSS
T ss_pred             eEEE--CCE
Confidence            8764  555

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.34  E-value=0.011  Score=51.01  Aligned_cols=59  Identities=20%  Similarity=0.232  Sum_probs=44.3

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCCCceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCC
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPD   70 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~   70 (361)
                      +.+.+.+|||-||+++ .++.+...++..+.+.+.. .+| ..+++.+++.+|++++.+.-.
T Consensus        33 ~~~gv~LSGGlDSs~iaa~~~~~~~~~~~~s~~~~~-~~e-~~~A~~va~~lg~~h~~~~i~   92 (299)
T d1jgta1          33 DTPLVVLSGGIDSSGVAACAHRAAGELDTVSMGTDT-SNE-FREARAVVDHLRTRHREITIP   92 (299)
T ss_dssp             CCCEEECCSSHHHHHHHHHHHHHHSSCEEEEEECSS-CCC-HHHHHHHHHHHTCEEEEEECC
T ss_pred             CCEEEEccCHHHHHHHHHHHHHhCCCcceeecCccc-hHH-HHHHHHhhhccccccccccee
Confidence            4677889999999877 7888877788777665432 233 467889999999998776544

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: N-type ATP pyrophosphatases
domain: Asparagine synthetase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.013  Score=50.97  Aligned_cols=61  Identities=16%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             CcEEEEecchHHHHHH-HHHHHcCC--------------CceEEEccCCCCcHHHHHHHHHHHHHhCCcEEEEcCChH
Q 018045           10 NDIAIAFSGAEDVALI-EYAHLTGR--------------PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAV   72 (361)
Q Consensus        10 ~~i~vs~SGGKDS~~l-~l~~~~~~--------------~i~v~~~dtg~~~pet~~~v~~~~~~~g~~i~~~~p~~~   72 (361)
                      .+|.+.+|||=||+++ .++.+...              .+.-+.++.. ..+ ...+++.+++.+|.+.+.+.....
T Consensus        35 vpig~~LSGGlDSs~Iaal~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~-e~~~a~~~a~~~~~~~~~v~~~~~  110 (324)
T d1ct9a1          35 VPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP-GSP-DLKAAQEVANHLGTVHHEIHFTVQ  110 (324)
T ss_dssp             SCEEEECCSSHHHHHHHHHHHHHC----------------CEEEEEEST-TCH-HHHHHHHHHHHHTCEEEEEECCHH
T ss_pred             CcEEEEecchHHHHHHHHHHHHHHhhcccccccccccCCCcccceeccC-CCc-hHHHHHHHHhhccccceEEEEecc
Confidence            3688999999999877 67766321              1222223221 233 446789999999999888766654

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.049  Score=43.47  Aligned_cols=43  Identities=23%  Similarity=0.540  Sum_probs=32.7

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHH---HHHHHhcCCCeEEEEEEcC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYV---ELADKLAGNGVKVGKFRAD  311 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~---~la~~~~~~~v~~~~vd~~  311 (361)
                      .+++.|+.|+.-+||+|..+.|.+.   ++.+.+++ ++.|..+-+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC-CcEEEEEecC
Confidence            3567799999999999999999876   44455555 6777776654

>d1hyua3 c.47.1.2 (A:1-102) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.24  E-value=1  Score=31.25  Aligned_cols=77  Identities=13%  Similarity=0.061  Sum_probs=52.4

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      -.++|.+..+.+.|..|..+...++++++.- + ++.+..   .         .......|++.+..+|+...+.|.| -
T Consensus        17 l~~~V~l~~~~~~~~~s~el~~~l~eva~lS-d-kI~~~~---~---------~~~~~r~Ps~~i~~~g~~~gI~F~G-i   81 (102)
T d1hyua3          17 LTKPVELIATLDDSAKSAEIKELLAEIAELS-D-KVTFKE---D---------NTLPVRKPSFLITNPGSQQGPRFAG-S   81 (102)
T ss_dssp             CCSCEEEEEECCSSHHHHHHHHHHHHHHTTC-T-TEEEEE---C---------TTSSSCSSEEEEECTTCCCSCEEES-C
T ss_pred             CCCCEEEEEEeCCChhHHHHHHHHHHHHhhC-C-CeEEEE---c---------CCCCCCCCeEEEecCCCEeeeEEec-C
Confidence            4778888889999999999998888888754 3 566642   1         1122346999998887755577766 3


Q ss_pred             CCHHHHHHHHHH
Q 018045          348 RDVDSLMAFVDA  359 (361)
Q Consensus       348 ~~~~~l~~~i~~  359 (361)
                      -.=.++..||..
T Consensus        82 P~GhEF~Slila   93 (102)
T d1hyua3          82 PLGHEFTSLVLA   93 (102)
T ss_dssp             CCGGGHHHHHHH
T ss_pred             CCcccHHHHHHH
Confidence            333455555543

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.10  E-value=3.3  Score=33.02  Aligned_cols=83  Identities=18%  Similarity=0.199  Sum_probs=55.8

Q ss_pred             CCCcEEEEEECCCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCC-------C----------chHHHHHcCCCCCCCeE
Q 018045          268 RQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADG-------D----------QKEYAKQKLQLGSFPTI  330 (361)
Q Consensus       268 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~-------~----------~~~l~~~~~~v~~~Pt~  330 (361)
                      ..+.||=+|.+.||+.|-.....+.+|++.  + +|..+..-+|-       +          ..... +.++..++||-
T Consensus         4 ~~~aVVElFTSqgCssCPpAd~~L~~L~~~--~-~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~-~~~g~~~vyTP   79 (225)
T d2axoa1           4 AVKGVVELFTSQGCASCPPADEALRKMIQK--G-DVVGLSYHVDYWNYLGWTDSLASKENTERQYGYM-RALGRNGVYTP   79 (225)
T ss_dssp             CCCCEEEEEECTTCTTCHHHHHHHHHHHHH--T-SSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHH-HHTTCSCCCSS
T ss_pred             CCCcEEEEeeCCCCCCCHHHHHHHHHhhCC--C-CEEEEEeccccccccCCCCCCCCchhhHHHHHHH-HhcCCCCCCce
Confidence            345677788899999999999999999864  3 57777666541       1          02355 67788888876


Q ss_pred             EEEeCCCCCeeecCCCCCCHHHHHHHHHH
Q 018045          331 LFFPKHSSKPIKYPSERRDVDSLMAFVDA  359 (361)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~l~~~i~~  359 (361)
                      -++-+|+.   ...+  .+...+.+.|.+
T Consensus        80 q~vvnG~~---~~~g--s~~~~~~~~i~~  103 (225)
T d2axoa1          80 QAILNGRD---HVKG--ADVRGIYDRLDA  103 (225)
T ss_dssp             EEEETTTE---EEET--TCHHHHHHHHHH
T ss_pred             eEEEeCcc---cccc--cCHHHHHHHHHH
Confidence            66668872   2223  355666555543

>d1t4za_ c.47.1.15 (A:) Adaptive-response sensory-kinase SasA, N-terminal domain {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: KaiB-like
domain: Adaptive-response sensory-kinase SasA, N-terminal domain
species: Synechococcus elongatus [TaxId: 32046]

Probab=84.64  E-value=4.6  Score=27.83  Aligned_cols=85  Identities=11%  Similarity=0.113  Sum_probs=56.0

Q ss_pred             CCcEEEEEECCCChhHHhhHHHHHHHHHHhcCC-CeEEEEEEcCCCchHHHHHcCCCCCCCeEEEEeCCCCCeeecCCCC
Q 018045          269 QEPWLVVLYAPWCQFCQAMEGSYVELADKLAGN-GVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSER  347 (361)
Q Consensus       269 ~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~-~v~~~~vd~~~~~~~l~~~~~~v~~~Pt~~~~~~g~~~~~~~~~~~  347 (361)
                      .+...+..|.+.-+.+......+..+-+.+... .+.+--||+.++ ++++ ..++|-.+||++=....-  ...+.| .
T Consensus        10 ~~~l~L~LfV~g~p~S~~ai~~l~~~le~~~~g~~y~LeVIDv~~q-Pela-E~~~IvATPtLIK~~P~P--~q~l~G-s   84 (105)
T d1t4za_          10 AQPLLLQLFVDTRPLSQHIVQRVKNILAAVEATVPISLQVINVADQ-PQLV-EYYRLVVTPALVKIGPGS--RQVLSG-I   84 (105)
T ss_dssp             CCCEEEEEEECSCHHHHHHHHHHHHHHTTTCCSSCEEEEEEETTTC-HHHH-HHTTCCSSSEEEEEESSC--CEEEES-S
T ss_pred             CCCeEEEEEEcCCcchHHHHHHHHHHHHHhcCCCceEEEEeecccC-HhHH-hhCCEEeccHhhhcCCCc--ceeecC-h
Confidence            344445555444466665555555555554432 588889999999 9999 999999999999665443  244445 4


Q ss_pred             CCHHHHHHHHH
Q 018045          348 RDVDSLMAFVD  358 (361)
Q Consensus       348 ~~~~~l~~~i~  358 (361)
                      .-.+.|..|.-
T Consensus        85 ~i~~ql~~w~p   95 (105)
T d1t4za_          85 DLTDQLANQLP   95 (105)
T ss_dssp             CHHHHHHHHHH
T ss_pred             hHHHHHhhhhh
Confidence            45666666653

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.20  E-value=1.4  Score=29.45  Aligned_cols=63  Identities=13%  Similarity=0.121  Sum_probs=37.1

Q ss_pred             CCChhHHhhHHHHHHHHHHhcCCCeEEEEEEcCCCc----h----HHHHH----cCCCCCCCeEEEEeCCCCCeeecCCC
Q 018045          279 PWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQ----K----EYAKQ----KLQLGSFPTILFFPKHSSKPIKYPSE  346 (361)
Q Consensus       279 ~wC~~C~~~~p~~~~la~~~~~~~v~~~~vd~~~~~----~----~l~~~----~~~v~~~Pt~~~~~~g~~~~~~~~~~  346 (361)
                      +.|++|.+.+..|.+.       ++.|..++++...    .    ++.++    ..+..++|.+++ .+|+     +.||
T Consensus        12 ~~C~~C~~AK~lL~~~-------~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi-~dg~-----~IGG   78 (87)
T d1abaa_          12 HKCGPCDNAKRLLTVK-------KQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFA-PDGS-----HIGG   78 (87)
T ss_dssp             SCCHHHHHHHHHHHHT-------TCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEEC-TTSC-----EEES
T ss_pred             CCChhHHHHHHHHHHc-------CCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEe-cCCc-----EEEC
Confidence            4599999988766553       5777777776531    1    22201    135678999854 3454     2343


Q ss_pred             CCCHHHHHHHH
Q 018045          347 RRDVDSLMAFV  357 (361)
Q Consensus       347 ~~~~~~l~~~i  357 (361)
                         .++|.+++
T Consensus        79 ---~del~e~~   86 (87)
T d1abaa_          79 ---FDQLREYF   86 (87)
T ss_dssp             ---HHHHHHHT
T ss_pred             ---HHHHHHHh
Confidence               35566554