Citrus Sinensis ID: 018048

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFCHSRSWIN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEcccccHHHHcccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccccccccHHHHHHccHHHHHHccccccccEEEccccHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccHHccccccHccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHcccccEEEEccccHHHHHHccccHHHHHHHHHccccccccccccccEEEccccccccccHEEcccccHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEcccEEccccccccccccHHHHHHHHcccccEEEcHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccHHcccHHHHHHHHHccHHHHccccc
Coil and Loop (DISEMBL)
matayssakfvqplslnstingrsrdnslfdplktgtsflgstrKLRVNSVhsnqgnvrrrlpVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFgkatgccrgqggsmhmfskehnllggfafigegipvatgaaFTSKYRREVlkeadcdhvtlaffgdgtcnngqffeCLNMAALWKLPIVFVVENNLWAIGMShlratsdpqiykkgpafgmpgfhvdgmDVLKVREVAKEAIERArrgegptlvecetyrfrghsladpdelrdpgeHLVLVLFIFCHSRSWIN
Flexible Loop (DISEMBL)
matayssakfvqplslnstingrsrdnslfdpLKTGTsflgstrklrvnsvhsnqgnvrrrlpvvavsevvkekkvksisnllitkqeglELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAierarrgegptlvecetYRFRGHSLADPDELRDPGEHLVLVLFIFCHSRSWIN
Low Complexity Region (SEG)
MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPvvavsevvkekkvksISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFCHSRSWIN
Disordered region (IsUnstruct)
********************************************************NVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD***LRDPGEHLVLVLFIFCHSRSW**
Disordered Region (DISOPRED)
****************************************************************************************GLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFCH******
Disordered Region (DISEMBL)
*********FVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFCHSRSWIN
Disordered Region (DISPRO)
***********************************************VNSVHSNQGNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFCHSRSWIN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFCHSRSWIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
O24457	428	Pyruvate dehydrogenase E1	yes	no	0.930	0.785	0.794	1e-160
Q7XTJ3	425	Pyruvate dehydrogenase E1	yes	no	0.722	0.614	0.889	1e-140
P51267	344	Pyruvate dehydrogenase E1	N/A	no	0.753	0.790	0.720	1e-116
Q1XDM0	346	Pyruvate dehydrogenase E1	N/A	no	0.734	0.765	0.728	1e-115
O66112	354	Pyruvate dehydrogenase E1	yes	no	0.686	0.700	0.464	1e-64
Q9R9N5	348	Pyruvate dehydrogenase E1	yes	no	0.700	0.727	0.473	5e-64
Q92IS3	326	Pyruvate dehydrogenase E1	yes	no	0.700	0.776	0.426	3e-63
Q4UKQ6	326	Pyruvate dehydrogenase E1	yes	no	0.722	0.800	0.419	1e-62
Q1RJX4	326	Pyruvate dehydrogenase E1	yes	no	0.700	0.776	0.423	2e-62
Q9ZDR4	326	Pyruvate dehydrogenase E1	yes	no	0.722	0.800	0.416	4e-62

>sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=1 SV=1

 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/346 (79%), Positives = 300/346 (86%), Gaps = 10/346 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTG--TSFLGSTRKLRVNSVHSNQGNV 58
           MATA++  K    + L+      S +N L  P++    +SFLGSTR L +  +  N  N 
Sbjct: 1   MATAFAPTKLTATVPLHG-----SHENRLLLPIRLAPPSSFLGSTRSLSLRRL--NHSNA 53

Query: 59  RRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 118
            RR PVV+V EVVKEK+  + ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKMFGF
Sbjct: 54  TRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 113

Query: 119 VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQG 178
           VHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCRGQG
Sbjct: 114 VHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQG 173

Query: 179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238
           GSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DCD VT+AFFGDGTCNN
Sbjct: 174 GSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNN 232

Query: 239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298
           GQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDV
Sbjct: 233 GQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV 292

Query: 299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           LKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD  E
Sbjct: 293 LKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAE 338

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 1

>sp|Q7XTJ3|ODPA3_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0119400 PE=2 SV=2

 Score =  499 bits (1284), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 234/263 (88%), Positives = 246/263 (93%), Gaps = 2/263 (0%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +T++E LELYEDM+LGR FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL + D VV
Sbjct: 73  VTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVV 132

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           STYRDHVHALSKGVPAR+VM+ELFGKATGCCRGQGGSMHMFS+ HNLLGGFAFIGEGIPV
Sbjct: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192

Query: 204 ATGAAFTSKYRREVLKEADCD--HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVEN 261
           ATGAAF +KYR EVLK++  D   VTLAFFGDGTCNNGQFFECLNMA LWKLPIVFVVEN
Sbjct: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVEN 252

Query: 262 NLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV 321
           NLWAIGMSHLRATSDP+IYKKGPAFGMPG HVDGMDVLKVREVAKEAIERARRGEGPTLV
Sbjct: 253 NLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLV 312

Query: 322 ECETYRFRGHSLADPDELRDPGE 344
           ECETYRFRGHSLADPDELR P E
Sbjct: 313 ECETYRFRGHSLADPDELRRPDE 335

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|P51267|ODPA_PORPU Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1

 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/272 (72%), Positives = 227/272 (83%)

Query: 73  EKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGF 132
           E  + + + + +TK + L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG 
Sbjct: 8   ELPLTNCNQINLTKHKLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGV 67

Query: 133 IKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLG 192
           IKLL  +D V STYRDHVHALSKGVP++ VM+ELFGK TGC RG+GGSMH+FS  HN LG
Sbjct: 68  IKLLDSKDYVCSTYRDHVHALSKGVPSQNVMAELFGKETGCSRGRGGSMHIFSAPHNFLG 127

Query: 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK 252
           GFAFI EGIPVATGAAF S YR++VLKE     VT  FFGDGT NNGQFFECLNMA LWK
Sbjct: 128 GFAFIAEGIPVATGAAFQSIYRQQVLKEPGELRVTACFFGDGTTNNGQFFECLNMAVLWK 187

Query: 253 LPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA 312
           LPI+FVVENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+VA++A+ERA
Sbjct: 188 LPIIFVVENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQVAEKAVERA 247

Query: 313 RRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           R+G+GPTL+E  TYRFRGHSLADPDELR   E
Sbjct: 248 RQGQGPTLIEALTYRFRGHSLADPDELRSRQE 279

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q1XDM0|ODPA_PORYE Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 193/265 (72%), Positives = 221/265 (83%)

Query: 80  SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE 139
           + L + K   L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG IKLL   
Sbjct: 17  TGLNLNKSNLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIKLLNPT 76

Query: 140 DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGE 199
           D V STYRDHVHALSKGVP++ VM+ELFGK TGC +G+GGSMH+FS  HN LGGFAFI E
Sbjct: 77  DYVCSTYRDHVHALSKGVPSKNVMAELFGKETGCSKGRGGSMHIFSAPHNFLGGFAFIAE 136

Query: 200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVV 259
           GIPVATGAAF S YR++VLKE +   VT  FFGDGT NNGQFFECLNMA LWKLPI+FVV
Sbjct: 137 GIPVATGAAFQSIYRQQVLKETEDLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVV 196

Query: 260 ENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT 319
           ENN WAIGM+H R++S P+I+KK  AFG+PG  VDGMDVL VR+ AK+A++RAR+G+GPT
Sbjct: 197 ENNQWAIGMAHHRSSSIPEIHKKAEAFGLPGIEVDGMDVLAVRQAAKQAVQRARQGDGPT 256

Query: 320 LVECETYRFRGHSLADPDELRDPGE 344
           L+E  TYRFRGHSLADPDELR   E
Sbjct: 257 LIEALTYRFRGHSLADPDELRSRQE 281

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|O66112|ODPA_ZYMMO Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=pdhA PE=3 SV=1

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/256 (46%), Positives = 167/256 (65%), Gaps = 8/256 (3%)

Query: 86  KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK-EDSVVS 144
           ++E LE Y  M++ R FE+ C Q+Y  G + GF HLY GQEAV+ G    L+   DSV++
Sbjct: 36  REELLEFYRRMLMIRRFEERCGQLYGLGLIAGFCHLYIGQEAVAVGLQAALQPGRDSVIT 95

Query: 145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
            YR+H H L+ G+  + VM+EL G+A+G   G+GGSMHMFS EH   GG   +G  +P+ 
Sbjct: 96  GYREHGHMLAYGIDPKIVMAELTGRASGISHGKGGSMHMFSTEHKFFGGNGIVGAQVPLG 155

Query: 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
            G AF  KYR     +  C   + A+FGDG+ N GQ +E  NMAALWKLP++FV+ENN +
Sbjct: 156 AGLAFAHKYR----NDGGC---SAAYFGDGSANQGQVYEAYNMAALWKLPVIFVIENNGY 208

Query: 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
           A+G S  RA +   + ++G  FG+P   VDGMDVL+VR  A  A++  + G+GP ++E +
Sbjct: 209 AMGTSIQRANAHTALSERGAGFGIPALVVDGMDVLEVRGAATVAVDWVQAGKGPIILEMK 268

Query: 325 TYRFRGHSLADPDELR 340
           TYR+RGHS++DP   R
Sbjct: 269 TYRYRGHSMSDPARYR 284

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Zymomonas mobilis (strain ATCC 31821 / ZM4 / CP4) (taxid: 264203)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9R9N5|ODPA_RHIME Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti (strain 1021) GN=pdhA PE=3 SV=1

 Score =  244 bits (624), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 123/260 (47%), Positives = 173/260 (66%), Gaps = 7/260 (2%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
           +K++ L+ Y +M+L R FE+   Q+Y  G + GF HLY GQEAV  G    LK+ D V++
Sbjct: 32  SKEDDLKAYREMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQLALKEGDQVIT 91

Query: 145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
            YRDH H L+ G+ AR VM+EL G+  G  +G+GGSMHMFSKE +  GG   +G  + + 
Sbjct: 92  GYRDHGHMLACGMSARGVMAELTGRRGGLSKGKGGSMHMFSKEKHFYGGHGIVGAQVSLG 151

Query: 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
           TG AF ++YR         D+V+LA+FGDG  N GQ +E  NMAALWKLP++++VENN +
Sbjct: 152 TGLAFANRYRGN-------DNVSLAYFGDGAANQGQVYESFNMAALWKLPVIYIVENNRY 204

Query: 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
           A+G S  RA++     ++G +FG+PG+ VDGMDV  V+  A EA+E  R G+GP ++E  
Sbjct: 205 AMGTSVSRASAQTDFSQRGASFGIPGYQVDGMDVRAVKAAADEAVEHCRSGKGPIILEML 264

Query: 325 TYRFRGHSLADPDELRDPGE 344
           TYR+RGHS++DP + R   E
Sbjct: 265 TYRYRGHSMSDPAKYRSKDE 284

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q92IS3|ODPA_RICCN Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=pdhA PE=3 SV=1

 Score =  242 bits (617), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 111/260 (42%), Positives = 167/260 (64%), Gaps = 7/260 (2%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
           TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +K DS ++
Sbjct: 11  TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAIDMVKQKGDSTIT 70

Query: 145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
           +YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F+  +   GG   +G  +P+ 
Sbjct: 71  SYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFNVPNKFYGGHGIVGAQVPIG 130

Query: 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
           TG AF  KY        D  ++   F GDG  N GQ +E  NMAALW LP+V+++ENN +
Sbjct: 131 TGLAFVEKYN-------DTHNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEY 183

Query: 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
           ++G S  R+T    +YKKG +FG+ GF +DGMD  ++ + +K+A E  R    P ++E +
Sbjct: 184 SMGTSVARSTFMRDLYKKGASFGIKGFQLDGMDFEEMYDGSKQAAEYVRENSFPLILEVK 243

Query: 325 TYRFRGHSLADPDELRDPGE 344
           TYR+RGHS++DP + R   E
Sbjct: 244 TYRYRGHSMSDPAKYRSKEE 263

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q4UKQ6|ODPA_RICFE Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=pdhA PE=3 SV=1

 Score =  240 bits (613), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/274 (41%), Positives = 170/274 (62%), Gaps = 13/274 (4%)

Query: 71  VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVST 130
           +K KK K       TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +
Sbjct: 3   IKPKKYKP------TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVIS 56

Query: 131 GFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNL 190
               + +K DS +++YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F   +  
Sbjct: 57  AVDTVKQKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKF 116

Query: 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAAL 250
            GG   +G  +P+ TG AF  KY          +++   F GDG  N GQ +E  NMAAL
Sbjct: 117 YGGHGIVGAQVPIGTGLAFAEKYN-------GTNNICFTFLGDGAVNQGQVYEAFNMAAL 169

Query: 251 WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIE 310
           W LP+V+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++   AK+A E
Sbjct: 170 WGLPVVYIIENNEYSMGTSVARSTFMRDLYKKGESFGIKGFQLDGMDFEEMYNGAKQAAE 229

Query: 311 RARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
             R    P ++E +TYR+RGHS++DP + R   E
Sbjct: 230 YVRENSFPLILEVKTYRYRGHSMSDPAKYRSKEE 263

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q1RJX4|ODPA_RICBR Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1

 Score =  239 bits (610), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/260 (42%), Positives = 166/260 (63%), Gaps = 7/260 (2%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
            K+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +KEDS+V+
Sbjct: 11  VKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVDMVKQKEDSMVT 70

Query: 145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
           +YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F   +   GG   +G  +P+ 
Sbjct: 71  SYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDVPNKFYGGHGIVGAQVPIG 130

Query: 205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
           TG AF  KY          +++   F GDG  N GQ +E  NMAALW LP+V+++ENN +
Sbjct: 131 TGLAFAEKYN-------GTNNICFTFLGDGAVNQGQVYEAFNMAALWGLPVVYIIENNEY 183

Query: 265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
           ++G S  R+T    +YKKG +FG+ GF ++GMD  ++ +  K+A E  R    P ++E +
Sbjct: 184 SMGTSVARSTFMRDLYKKGESFGIKGFQLNGMDFEEMYDGVKQAAEYVRENSMPLILEVK 243

Query: 325 TYRFRGHSLADPDELRDPGE 344
           TYR+RGHS++DP + R   E
Sbjct: 244 TYRYRGHSMSDPAKYRSKEE 263

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia bellii (strain RML369-C) (taxid: 336407)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

>sp|Q9ZDR4|ODPA_RICPR Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii (strain Madrid E) GN=pdhA PE=3 SV=1

 Score =  238 bits (608), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/274 (41%), Positives = 168/274 (61%), Gaps = 13/274 (4%)

Query: 71  VKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVST 130
           +K +K K I      K+E ++ ++DM+L R FE+ C Q+Y  GK+ GF HLY GQEAV +
Sbjct: 3   IKPEKYKPI------KEEYIKSFKDMLLLRRFEEKCGQLYGMGKIGGFCHLYIGQEAVIS 56

Query: 131 GFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNL 190
               + KK DS +++YRDH H +  G   + V++EL G+ATGC +G+GGSMH+F   +  
Sbjct: 57  AVAMIKKKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHLFDIPNKF 116

Query: 191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAAL 250
            GG   +G  +P+ TG AF  KY          +++   F GDG  N GQ +E  NMA+L
Sbjct: 117 YGGHGIVGAQVPIGTGLAFAEKYN-------GTNNICFTFLGDGAVNQGQVYEAFNMASL 169

Query: 251 WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIE 310
           W LPIV+++ENN +++G S  R+T    +YKKG +FG+ GF +DGMD  ++    K+  E
Sbjct: 170 WGLPIVYIIENNEYSMGTSVARSTFMCDLYKKGESFGIRGFQLDGMDFEEMYNGTKQVAE 229

Query: 311 RARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
             R    P ++E +TYR+RGHS++DP + R   E
Sbjct: 230 YVRENSFPVILEVKTYRYRGHSMSDPAKYRSKEE 263

The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

EC: 1

EC: .

EC: 2

EC: .

EC: 4

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
255548035	433	pyruvate dehydrogenase, putative [Ricinu	0.947	0.789	0.846	1e-170
118486324	442	unknown [Populus trichocarpa]	0.950	0.776	0.848	1e-169
225453620	433	PREDICTED: pyruvate dehydrogenase E1 com	0.939	0.782	0.830	1e-166
449445539	428	PREDICTED: pyruvate dehydrogenase E1 com	0.919	0.775	0.835	1e-162
6715645	679	T25K16.8 [Arabidopsis thaliana]	0.930	0.494	0.794	1e-159
193290722	431	putative pyruvate dehydrogenase E1 alpha	0.933	0.781	0.821	1e-159
297843008	432	PDH-E1 alpha [Arabidopsis lyrata subsp.	0.933	0.780	0.793	1e-158
15223294	428	pyruvate dehydrogenase E1 component subu	0.930	0.785	0.794	1e-158
356573267	427	PREDICTED: pyruvate dehydrogenase E1 com	0.922	0.779	0.817	1e-157
356504193	418	PREDICTED: pyruvate dehydrogenase E1 com	0.903	0.779	0.815	1e-157

>gi|255548035|ref|XP_002515074.1| pyruvate dehydrogenase, putative [Ricinus communis] gi|223545554|gb|EEF47058.1| pyruvate dehydrogenase, putative [Ricinus communis]

 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 292/345 (84%), Positives = 314/345 (91%), Gaps = 3/345 (0%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHS-NQGNVR 59
           MATA+S+   +QPL +++T    ++   LFDPLKT +SF+GST KLR +++   N  +  
Sbjct: 1   MATAFSATHLIQPLPVDNT-RSYNKHQPLFDPLKTTSSFIGSTSKLRFSALPKLNHVSSF 59

Query: 60  RRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFV 119
           RR  +VAVSE VKEKK+KS SNLLITK+EGL LYEDM+LGR+FEDMCAQMYYRGKMFGFV
Sbjct: 60  RRSAIVAVSEAVKEKKLKSTSNLLITKEEGLVLYEDMVLGRAFEDMCAQMYYRGKMFGFV 119

Query: 120 HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG 179
           HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGK TGCCRGQGG
Sbjct: 120 HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCRGQGG 179

Query: 180 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239
           SMHMFSK+HN+LGGFAFIGEGIPVATGAAFTSKYRREVLKE DCDHVTLAFFGDGTCNNG
Sbjct: 180 SMHMFSKDHNVLGGFAFIGEGIPVATGAAFTSKYRREVLKE-DCDHVTLAFFGDGTCNNG 238

Query: 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVL 299
           QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI+KKGPAFGMPG HVDGMDVL
Sbjct: 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVL 298

Query: 300 KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           KVREVAKEAI RARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 299 KVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAE 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486324|gb|ABK95003.1| unknown [Populus trichocarpa]

 Score =  602 bits (1551), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 296/349 (84%), Positives = 318/349 (91%), Gaps = 6/349 (1%)

Query: 2   ATAYSSAKFVQPLSLNSTIN-GRSRDNSLFDPLKTG---TSFLGSTRKLRVNSVHSNQ-- 55
           A+A+S+ KF QP SLN T +    +  S FDPL+T    +SFLGSTRKLR++S   ++  
Sbjct: 4   ASAFSATKFTQPFSLNGTTSRSHEKHQSFFDPLRTAPSSSSFLGSTRKLRLSSASKSKLV 63

Query: 56  GNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKM 115
            N  RR  VVAVS+VVKEKKVKS +NLLITK+EGLE+YEDMILGR+FEDMCAQMYYRGKM
Sbjct: 64  ANPNRRSAVVAVSDVVKEKKVKSTTNLLITKEEGLEVYEDMILGRAFEDMCAQMYYRGKM 123

Query: 116 FGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 175
           FGFVHLYNGQEAVSTGFIKLLK+EDSVVSTYRDHVHALSKGVPARAVMSELFGK TGCCR
Sbjct: 124 FGFVHLYNGQEAVSTGFIKLLKREDSVVSTYRDHVHALSKGVPARAVMSELFGKTTGCCR 183

Query: 176 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 235
           GQGGSMHMFSKEHNL+GGFAFIGEGIPVATGAAF+SKYRREVLKEADCDHVTLAFFGDGT
Sbjct: 184 GQGGSMHMFSKEHNLIGGFAFIGEGIPVATGAAFSSKYRREVLKEADCDHVTLAFFGDGT 243

Query: 236 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295
           CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH+RATSDP+I+KKGPAFGMPG HVDG
Sbjct: 244 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHVRATSDPEIWKKGPAFGMPGVHVDG 303

Query: 296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           MDVLKVREVAKEAI RARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 304 MDVLKVREVAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPAE 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453620|ref|XP_002267676.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha [Vitis vinifera] gi|296089009|emb|CBI38712.3| unnamed protein product [Vitis vinifera]

 Score =  590 bits (1520), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/348 (83%), Positives = 311/348 (89%), Gaps = 9/348 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLR-VNSVHSNQGNVR 59
           MA+++ S+  +QPL L S      +  +LFD LKT ++FLGST KLR V+    N  N  
Sbjct: 1   MASSFLSSGIIQPLPLRSP----DKPQTLFDHLKTTSTFLGSTSKLRSVSLSKPNLPNPH 56

Query: 60  RRLPVVAVSEVVKEKKVKSI---SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMF 116
           RR  VVAVS+V+KEKK KS    S LLIT++EGLELYEDM+LGR+FEDMCAQMYYRGKMF
Sbjct: 57  RRSTVVAVSDVLKEKKTKSAASSSQLLITREEGLELYEDMVLGRAFEDMCAQMYYRGKMF 116

Query: 117 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176
           GFVHLYNGQEAVSTGFIKLLKKED VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG
Sbjct: 117 GFVHLYNGQEAVSTGFIKLLKKEDCVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176

Query: 177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 236
           QGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAFTSKY+REVLKE DCD VTLAFFGDGTC
Sbjct: 177 QGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYKREVLKE-DCDEVTLAFFGDGTC 235

Query: 237 NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296
           NNGQFFECLNMA+LWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPGFHVDGM
Sbjct: 236 NNGQFFECLNMASLWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGFHVDGM 295

Query: 297 DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           DVLKVREVAKEAI+RARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 296 DVLKVREVAKEAIQRARRGEGPTLVECETYRFRGHSLADPDELRDPAE 343

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445539|ref|XP_004140530.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Cucumis sativus]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/341 (83%), Positives = 304/341 (89%), Gaps = 9/341 (2%)

Query: 6   SSAKFVQPLSLNSTINGRSRDNSL-FDPLKTGTSFLGSTRKLRVNSVHSNQGNVR-RRLP 63
           SS K +QPL LNST   RS D  L FDP ++ + FLGS  + R+ S+  ++ N R R  P
Sbjct: 5   SSLKILQPLPLNST---RSNDKPLLFDPFRSTSKFLGS--RFRLPSL--SKSNTRCRSSP 57

Query: 64  VVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYN 123
           VVAVS+VVKEKK+K  SNLLITK+EGL LYEDMILGR FEDMCAQMYYRGKMFGFVHLYN
Sbjct: 58  VVAVSDVVKEKKLKPSSNLLITKEEGLVLYEDMILGREFEDMCAQMYYRGKMFGFVHLYN 117

Query: 124 GQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHM 183
           GQEAVSTGFIKLL + D+VVSTYRDHVHALSKGVP+R VMSELFGK TGCCRGQGGSMHM
Sbjct: 118 GQEAVSTGFIKLLTQRDTVVSTYRDHVHALSKGVPSREVMSELFGKTTGCCRGQGGSMHM 177

Query: 184 FSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFE 243
           FSKEHNL+GGFAFIGEGIPVATGAAFTSKY+REVLKEADC  VTLAFFGDGTCNNGQFFE
Sbjct: 178 FSKEHNLIGGFAFIGEGIPVATGAAFTSKYKREVLKEADCQDVTLAFFGDGTCNNGQFFE 237

Query: 244 CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE 303
           CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDVLKVRE
Sbjct: 238 CLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVRE 297

Query: 304 VAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           VAKEAI RARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 298 VAKEAIGRARRGEGPTLVECETYRFRGHSLADPDELRDPDE 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6715645|gb|AAF26472.1|AC007323_13 T25K16.8 [Arabidopsis thaliana]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 275/346 (79%), Positives = 300/346 (86%), Gaps = 10/346 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTG--TSFLGSTRKLRVNSVHSNQGNV 58
           MATA++  K    + L+      S +N L  P++    +SFLGSTR L +  +  N  N 
Sbjct: 1   MATAFAPTKLTATVPLHG-----SHENRLLLPIRLAPPSSFLGSTRSLSLRRL--NHSNA 53

Query: 59  RRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 118
            RR PVV+V EVVKEK+  + ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKMFGF
Sbjct: 54  TRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 113

Query: 119 VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQG 178
           VHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCRGQG
Sbjct: 114 VHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQG 173

Query: 179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238
           GSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DCD VT+AFFGDGTCNN
Sbjct: 174 GSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNN 232

Query: 239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298
           GQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDV
Sbjct: 233 GQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV 292

Query: 299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           LKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD  E
Sbjct: 293 LKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAE 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|193290722|gb|ACF17669.1| putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]

 Score =  566 bits (1458), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/348 (82%), Positives = 305/348 (87%), Gaps = 11/348 (3%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLG-STRKLRVNSVHSNQGNVR 59
           MAT++ +AK    L LNST   RS D  L   +   +SFLG S  KL +N+  S Q   R
Sbjct: 1   MATSFFTAKV---LPLNST---RSADKPLLGQVLLPSSFLGPSAHKLSLNNAFSLQSQ-R 53

Query: 60  RRLPVVAVSEVVKEKKVKSIS---NLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMF 116
           R   VVAVS+VVK+ K KS S   NLLITK+EGLELYEDM+LGR+FEDMCAQMYYRGKMF
Sbjct: 54  RSNAVVAVSDVVKDNKSKSKSSISNLLITKEEGLELYEDMVLGRAFEDMCAQMYYRGKMF 113

Query: 117 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRG 176
           GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPAR VMSELFGK TGCCRG
Sbjct: 114 GFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARQVMSELFGKTTGCCRG 173

Query: 177 QGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 236
           QGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC
Sbjct: 174 QGGSMHMFSKEHNVLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC 233

Query: 237 NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM 296
           NNGQF+ECLNMAALWKLPI+FVVENNLWAIGMSHLR+TSDP+I+KKGPAFGMPG HVDGM
Sbjct: 234 NNGQFYECLNMAALWKLPIIFVVENNLWAIGMSHLRSTSDPEIWKKGPAFGMPGVHVDGM 293

Query: 297 DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           DVLKVREVA EA+ RARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 294 DVLKVREVANEAVGRARRGEGPTLVECETYRFRGHSLADPDELRDPAE 341

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843008|ref|XP_002889385.1| PDH-E1 alpha [Arabidopsis lyrata subsp. lyrata] gi|297335227|gb|EFH65644.1| PDH-E1 alpha [Arabidopsis lyrata subsp. lyrata]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 277/349 (79%), Positives = 303/349 (86%), Gaps = 12/349 (3%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLK----TGTSFLGSTRKLRVNSVHS-NQ 55
           MATA++  K    + L+      S++N L  P++    + +SFLGSTR L VNS    N 
Sbjct: 1   MATAFAPTKLTATVPLHG-----SQENRLLLPIRLAPLSSSSFLGSTRSLTVNSPRRLNH 55

Query: 56  GNVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKM 115
            N  RR PVVAV EVVKEK+  + ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKM
Sbjct: 56  SNATRRSPVVAVQEVVKEKQSTN-NSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKM 114

Query: 116 FGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCR 175
           FGFVHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCR
Sbjct: 115 FGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCR 174

Query: 176 GQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT 235
           GQGGSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DC+ VT+AFFGDGT
Sbjct: 175 GQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCEDVTVAFFGDGT 233

Query: 236 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDG 295
           CNNGQF+ECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDG
Sbjct: 234 CNNGQFYECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDG 293

Query: 296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           MDVLKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD  E
Sbjct: 294 MDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAE 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223294|ref|NP_171617.1| pyruvate dehydrogenase E1 component subunit alpha [Arabidopsis thaliana] gi|2454182|gb|AAB86803.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|15450707|gb|AAK96625.1| At1g01090/T25K16_8 [Arabidopsis thaliana] gi|17380622|gb|AAL36074.1| At1g01090/T25K16_8 [Arabidopsis thaliana] gi|110742108|dbj|BAE98984.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gi|332189112|gb|AEE27233.1| pyruvate dehydrogenase E1 component subunit alpha [Arabidopsis thaliana]

 Score =  563 bits (1451), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 275/346 (79%), Positives = 300/346 (86%), Gaps = 10/346 (2%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTG--TSFLGSTRKLRVNSVHSNQGNV 58
           MATA++  K    + L+      S +N L  P++    +SFLGSTR L +  +  N  N 
Sbjct: 1   MATAFAPTKLTATVPLHG-----SHENRLLLPIRLAPPSSFLGSTRSLSLRRL--NHSNA 53

Query: 59  RRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 118
            RR PVV+V EVVKEK+  + ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKMFGF
Sbjct: 54  TRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 113

Query: 119 VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQG 178
           VHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCRGQG
Sbjct: 114 VHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQG 173

Query: 179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238
           GSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DCD VT+AFFGDGTCNN
Sbjct: 174 GSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNN 232

Query: 239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298
           GQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDV
Sbjct: 233 GQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV 292

Query: 299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           LKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD  E
Sbjct: 293 LKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAE 338

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573267|ref|XP_003554784.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max]

 Score =  562 bits (1448), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/340 (81%), Positives = 294/340 (86%), Gaps = 7/340 (2%)

Query: 6   SSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLR-VNSVHSNQGNVRRRLPV 64
           S  K  +PL L+      S   SL     T T FLGST KLR ++ +  N    R    V
Sbjct: 4   SVPKLARPLPLHH----HSSYGSLTMSFHTFTPFLGSTHKLRFISPIKLNA--PRFNSSV 57

Query: 65  VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNG 124
           V+VS++ K  K KS +NLLITK+EGL+LYEDM+LGRSFEDMCAQMYYRGKMFGFVHLYNG
Sbjct: 58  VSVSDLFKNNKPKSTTNLLITKEEGLQLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNG 117

Query: 125 QEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMF 184
           QEAVSTGFI  LKKED VVSTYRDHVHALSKGVPARAVMSELFGKATGC RGQGGSMHMF
Sbjct: 118 QEAVSTGFINFLKKEDCVVSTYRDHVHALSKGVPARAVMSELFGKATGCSRGQGGSMHMF 177

Query: 185 SKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFEC 244
           SKEHNL+GGFAFI EGIPVATGAAF+SKYRREVLKEADCDHVTLAFFGDGTCNNGQF+EC
Sbjct: 178 SKEHNLIGGFAFIAEGIPVATGAAFSSKYRREVLKEADCDHVTLAFFGDGTCNNGQFYEC 237

Query: 245 LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV 304
           LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI+KKGPAFGMPG HVDGMDVLKVREV
Sbjct: 238 LNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVREV 297

Query: 305 AKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           AKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 298 AKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAE 337

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504193|ref|XP_003520883.1| PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-like [Glycine max]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/342 (81%), Positives = 292/342 (85%), Gaps = 16/342 (4%)

Query: 4   AYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLR-VNSVHSNQGNVRRRL 62
           + S  K VQPL L        R NS        T FLGST K R ++ +  N    R   
Sbjct: 2   SLSVPKLVQPLPLQ-----HHRSNS--------TLFLGSTHKFRFISPIKLNA--PRSNS 46

Query: 63  PVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLY 122
            VV+VS +VK  K KS +NLLITK EGL+LYEDM+LGRSFEDMCAQMYYRGKMFGFVHLY
Sbjct: 47  TVVSVSNLVKNNKPKSTTNLLITKGEGLQLYEDMVLGRSFEDMCAQMYYRGKMFGFVHLY 106

Query: 123 NGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMH 182
           NGQEAVSTGFI  LKKED VVSTYRDHVHALSKGVPARAVMSELFGKATGC RGQGGSMH
Sbjct: 107 NGQEAVSTGFINFLKKEDCVVSTYRDHVHALSKGVPARAVMSELFGKATGCSRGQGGSMH 166

Query: 183 MFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFF 242
           MFSKEHNL+GGFAFI EGIPVATGAAF+SKYRREVLKEADCDHVTLAFFGDGTCNNGQF+
Sbjct: 167 MFSKEHNLIGGFAFIAEGIPVATGAAFSSKYRREVLKEADCDHVTLAFFGDGTCNNGQFY 226

Query: 243 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302
           ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI+KKGPAFGMPG HVDGMDVLKVR
Sbjct: 227 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIWKKGPAFGMPGVHVDGMDVLKVR 286

Query: 303 EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 287 EVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAE 328

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2200980	428	PDH-E1 ALPHA "pyruvate dehydro	0.930	0.785	0.768	1.5e-138
GENEDB_PFALCIPARUM|PF11_0256	608	PF11_0256 "pyruvate dehydrogen	0.382	0.226	0.589	5.3e-73
UNIPROTKB|Q8IIB8	608	PF11_0256 "Pyruvate dehydrogen	0.382	0.226	0.589	5.3e-73
UNIPROTKB|Q0C0R6	336	pdhA "Pyruvate dehydrogenase c	0.689	0.741	0.496	6.7e-65
TIGR_CMR|GSU_2443	325	GSU_2443 "dehydrogenase comple	0.706	0.784	0.454	3.8e-62
TIGR_CMR|SPO_2240	330	SPO_2240 "pyruvate dehydrogena	0.689	0.754	0.466	9e-61
TIGR_CMR|NSE_0802	334	NSE_0802 "pyruvate dehydrogena	0.686	0.742	0.470	1.9e-60
TIGR_CMR|ECH_0220	327	ECH_0220 "pyruvate dehydrogena	0.703	0.776	0.436	1.3e-59
UNIPROTKB|Q2GLN8	345	pdhA "Pyruvate dehydrogenase c	0.689	0.721	0.434	1.8e-55
TIGR_CMR|APH_0082	345	APH_0082 "pyruvate dehydrogena	0.689	0.721	0.434	1.8e-55

TAIR|locus:2200980 PDH-E1 ALPHA "pyruvate dehydrogenase E1 alpha" [Arabidopsis thaliana (taxid:3702)]

 Score = 1356 (482.4 bits), Expect = 1.5e-138, P = 1.5e-138
 Identities = 266/346 (76%), Positives = 288/346 (83%)

Query:     1 MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTG--TSFLGSTRKLRVNSVHSNQGNV 58
             MATA++  K    + L+      S +N L  P++    +SFLGSTR L +  +  N  N 
Sbjct:     1 MATAFAPTKLTATVPLHG-----SHENRLLLPIRLAPPSSFLGSTRSLSLRRL--NHSNA 53

Query:    59 RRRLPXXXXXXXXXXXXXXXISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 118
              RR P                ++LLITK+EGLELYEDMILGRSFEDMCAQMYYRGKMFGF
Sbjct:    54 TRRSPVVSVQEVVKEKQSTNNTSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGF 113

Query:   119 VHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQG 178
             VHLYNGQEAVSTGFIKLL K DSVVSTYRDHVHALSKGV ARAVMSELFGK TGCCRGQG
Sbjct:   114 VHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQG 173

Query:   179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN 238
             GSMHMFSKEHN+LGGFAFIGEGIPVATGAAF+SKYRREVLK+ DCD VT+AFFGDGTCNN
Sbjct:   174 GSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQ-DCDDVTVAFFGDGTCNN 232

Query:   239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDV 298
             GQFFECLNMAAL+KLPI+FVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDV
Sbjct:   233 GQFFECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDV 292

Query:   299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
             LKVREVAKEA+ RARRGEGPTLVECETYRFRGHSLADPDELRD  E
Sbjct:   293 LKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAE 338

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006096 "glycolysis" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA;ISS

GO:0016624 "oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009536 "plastid" evidence=ISS

GENEDB_PFALCIPARUM|PF11_0256 PF11_0256 "pyruvate dehydrogenase E1 component, alpha subunit, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 431 (156.8 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 82/139 (58%), Positives = 107/139 (76%)

Query:    79 ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK 138
             IS++ I+++E   LYEDM LGR FE++ A++YY  ++ GFVHLYNGQEAVSTG IK LK 
Sbjct:   183 ISDVNISREEICTLYEDMYLGRLFENLVAKLYYNKRVNGFVHLYNGQEAVSTGIIKNLKN 242

Query:   139 EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC-RGQGGSMHMFSKEHNLLGGFAFI 197
              D V STYRDHVHALSKGVPA  +++EL+G   G   +G+GGSMH++SKE+N +GGF FI
Sbjct:   243 SDFVTSTYRDHVHALSKGVPAHKILNELYGNYYGSTNKGKGGSMHIYSKENNFIGGFGFI 302

Query:   198 GEGIPVATGAAFTSKYRRE 216
             GE IP+A G A++  Y+ E
Sbjct:   303 GEQIPIAVGLAYSILYKNE 321

GO:0020011 "apicoplast" evidence=IDA

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

UNIPROTKB|Q8IIB8 PF11_0256 "Pyruvate dehydrogenase E1 component, alpha subunit, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 431 (156.8 bits), Expect = 5.3e-73, Sum P(2) = 5.3e-73
 Identities = 82/139 (58%), Positives = 107/139 (76%)

Query:    79 ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK 138
             IS++ I+++E   LYEDM LGR FE++ A++YY  ++ GFVHLYNGQEAVSTG IK LK 
Sbjct:   183 ISDVNISREEICTLYEDMYLGRLFENLVAKLYYNKRVNGFVHLYNGQEAVSTGIIKNLKN 242

Query:   139 EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCC-RGQGGSMHMFSKEHNLLGGFAFI 197
              D V STYRDHVHALSKGVPA  +++EL+G   G   +G+GGSMH++SKE+N +GGF FI
Sbjct:   243 SDFVTSTYRDHVHALSKGVPAHKILNELYGNYYGSTNKGKGGSMHIYSKENNFIGGFGFI 302

Query:   198 GEGIPVATGAAFTSKYRRE 216
             GE IP+A G A++  Y+ E
Sbjct:   303 GEQIPIAVGLAYSILYKNE 321

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS

GO:0020011 "apicoplast" evidence=IDA

UNIPROTKB|Q0C0R6 pdhA "Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase, alpha subunit" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 127/256 (49%), Positives = 175/256 (68%)

Query:    85 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVS 144
             TK E L  Y +M+L R FE+   Q+Y  GK+ GF HLY GQEAV TG    LK+ D V++
Sbjct:    16 TKAEMLAFYREMLLIRRFEEKAGQLYGMGKIAGFCHLYIGQEAVVTGMQACLKEGDQVIT 75

Query:   145 TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVA 204
              YRDH H L+  +  + VM+EL G+  G  RG+GGSMHMFSKE N  GG   +G  +P+ 
Sbjct:    76 GYRDHGHMLACQMDPKGVMAELTGRVGGYSRGKGGSMHMFSKEKNFYGGHGIVGAQVPLG 135

Query:   205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW 264
             TG AF +KYR         D+V+LA+FGDG  N GQ +E  NMA+LWKLP+V+V+ENN++
Sbjct:   136 TGLAFANKYRGN-------DNVSLAYFGDGAANQGQVYEAFNMASLWKLPVVYVIENNMY 188

Query:   265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE 324
             A+G S  R  S+ +++K+G +F + G  VDGMDVL VRE  ++A++ AR G+GP ++E +
Sbjct:   189 AMGTSVERHASEVELFKRGISFEIEGEEVDGMDVLAVREAGEKAVKHARAGKGPYILEMK 248

Query:   325 TYRFRGHSLADPDELR 340
             TYR+RGHS++DP + R
Sbjct:   249 TYRYRGHSMSDPAKYR 264

GO:0004738 "pyruvate dehydrogenase activity" evidence=ISS

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|GSU_2443 GSU_2443 "dehydrogenase complex, E1 component, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 119/262 (45%), Positives = 166/262 (63%)

Query:    83 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
             ++   E L+++E M+L R FE+ CA+ Y +G + GF+HLY+GQEAV+ G    L+K+D +
Sbjct:     8 ILPDSELLKMHEQMVLSREFEESCAEQYTKGHITGFLHLYSGQEAVAVGATAALRKDDYI 67

Query:   143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
             +S YR+H  A+ +G   R VM+ELFGKATG C+G+GGSMH+F      +GG+A +G   P
Sbjct:    68 LSAYREHAQAIVRGAEPRRVMAELFGKATGMCKGKGGSMHLFDPSLAFMGGYAIVGGQFP 127

Query:   203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
             +A G AF SKYR+E         ++  FFGDG  N G F E LN A LW+LP++F+ ENN
Sbjct:   128 IAVGLAFASKYRKE-------GRISACFFGDGAVNQGTFHESLNWARLWELPVLFICENN 180

Query:   263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
              + IG +  RA++   I+K+   + +P   VDGMDV+ V E  K   E  R    P L+E
Sbjct:   181 FYGIGTAVSRASALSDIHKRTCGYDIPSVRVDGMDVMAVHEAVKWGAEWVREHSRPYLIE 240

Query:   323 CETYRFRGHSLADPDELRDPGE 344
               TYRFRGHS+ADP + R   E
Sbjct:   241 AMTYRFRGHSMADPGKYRSAAE 262

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_2240 SPO_2240 "pyruvate dehydrogenase complex, E1 component, alpha subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 120/257 (46%), Positives = 166/257 (64%)

Query:    85 TKQEGLE-LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             T  E L+  Y +M+L R FE+   Q+Y  G + GF HLY GQEAV  G     ++ D  +
Sbjct:    13 TSAEELKHYYREMLLIRRFEEKAGQLYGMGLIGGFCHLYIGQEAVVVGLEAAAEEGDKRI 72

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ++YRDH H L+ G+    VM+EL G+  G  +G+GGSMHMFSKE +  GG   +G  +P+
Sbjct:    73 TSYRDHGHMLACGMDPGGVMAELTGREGGLSKGKGGSMHMFSKEKHFYGGHGIVGAQVPL 132

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
               G AF  KY+       D   VT  +FGDG  N GQ +E  NMAALWKLP++FV+ENN 
Sbjct:   133 GAGLAFADKYQ-------DNGRVTFTYFGDGAANQGQVYETFNMAALWKLPVIFVIENNQ 185

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
             +A+G +  R+TS P IY +G AFG+PG  VDGM+VL V+E  ++A+   R G+GP ++E 
Sbjct:   186 YAMGTAQKRSTSSPDIYTRGEAFGIPGETVDGMNVLSVKEAGEKAVAHCRAGKGPYILEV 245

Query:   324 ETYRFRGHSLADPDELR 340
             +TYR+RGHS++DP + R
Sbjct:   246 KTYRYRGHSMSDPAKYR 262

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|NSE_0802 NSE_0802 "pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 120/255 (47%), Positives = 162/255 (63%)

Query:    90 LELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDH 149
             L LYE M+L R FE+   Q+Y  G++ GF HLY GQEAV+ G    LK+EDSV+++YRDH
Sbjct:    24 LPLYEKMLLIRRFEERAGQLYSMGEICGFCHLYIGQEAVAVGLDYCLKREDSVITSYRDH 83

Query:   150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAF 209
                L +G     +M+EL GK++GC  G+GGSMHMF  E N  GG   +G  + + TG AF
Sbjct:    84 GMMLVRGSSPDVMMAELLGKSSGCSNGKGGSMHMFDPERNFFGGHGIVGSQVSLGTGIAF 143

Query:   210 TSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS 269
               KYR       D + V  + FGDG  N GQ +E  NMAALWKLPI++VVENN++A+G S
Sbjct:   144 AEKYR-------DSNAVVASCFGDGAINQGQVYESFNMAALWKLPILYVVENNMYAMGSS 196

Query:   270 HLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR 329
                  ++  +  +G +FG+PG+  +GMD++ V  V   A+E  R G GP LVE +TYRF+
Sbjct:   197 VESVCANSSLSNRGESFGIPGYSANGMDLMDVIRVTMNAVEGVRGGSGPVLVEYKTYRFK 256

Query:   330 GHSLADPDELRDPGE 344
             GHS++DP   R   E
Sbjct:   257 GHSMSDPASYRSKEE 271

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|ECH_0220 ECH_0220 "pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 114/261 (43%), Positives = 166/261 (63%)

Query:    84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             +T ++ +  Y  M+L R FE+   Q+Y  G + GF HLY GQEA++TG    +   DS++
Sbjct:     9 LTNEQLVNCYYSMLLMRRFEEKSGQLYGMGLIGGFCHLYIGQEAIATGIQNAIIDGDSII 68

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ++YRDH   LS G   + VM+EL GK+TGC +G+GGSMHMF+ E +  GG   +G  +P+
Sbjct:    69 TSYRDHGFMLSVGTDPKYVMAELMGKSTGCSKGKGGSMHMFNIEKHFFGGHGIVGAQVPI 128

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
              TG A  +KY++        ++V     GDG  N GQ +E  NMAALWKLP+++V+ENN 
Sbjct:   129 GTGIALANKYKKN-------NNVVFVCLGDGAVNQGQVYESFNMAALWKLPVIYVIENNE 181

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
             +A+G S  R++    +YKKG +FG+PG  VDGMD+  V + A +A+   R   GP L+E 
Sbjct:   182 YAMGTSVSRSSYITDLYKKGESFGVPGHQVDGMDLFSVTQAATDAVNYCRANNGPILLEM 241

Query:   324 ETYRFRGHSLADPDELRDPGE 344
             +TYR+RGHS++DP + R   E
Sbjct:   242 KTYRYRGHSMSDPAKYRSKQE 262

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

UNIPROTKB|Q2GLN8 pdhA "Pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 112/258 (43%), Positives = 162/258 (62%)

Query:    84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             +T +  L  Y+ M+  R  E+   Q+Y  G + GF HLY GQEAV+ G   +L+  DSV+
Sbjct:    28 LTNESVLSAYKHMLFMRRLEEKVGQLYGMGLIRGFCHLYIGQEAVAAGMYSVLQPSDSVI 87

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ++YR+H  ALS G     +++EL G++ G  +G+GGSMH+F+ + N  GG   +G  +P+
Sbjct:    88 TSYREHGFALSSGESPGKIIAELLGRSAGSSKGKGGSMHIFNVQKNFYGGHGIVGAQVPI 147

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
              TG AF +KY+           V     GDG  N GQ +E  NMAALWKLP+V+VVENN 
Sbjct:   148 GTGIAFANKYKAN-------GGVVFTCLGDGAINQGQVYEAFNMAALWKLPVVYVVENNE 200

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV-REVAKEAIERARRGEGPTLVE 322
             +A+G S  R++    +YK+G + G+PG  VDGMD+ +V REV+ +A    R G GP L+E
Sbjct:   201 YAMGTSVARSSYVSDLYKRGESCGVPGRRVDGMDLFEVIREVS-QAAAHCREGNGPILLE 259

Query:   323 CETYRFRGHSLADPDELR 340
              +TYR+RGHS++DP + R
Sbjct:   260 MKTYRYRGHSMSDPAKYR 277

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

TIGR_CMR|APH_0082 APH_0082 "pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 112/258 (43%), Positives = 162/258 (62%)

Query:    84 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
             +T +  L  Y+ M+  R  E+   Q+Y  G + GF HLY GQEAV+ G   +L+  DSV+
Sbjct:    28 LTNESVLSAYKHMLFMRRLEEKVGQLYGMGLIRGFCHLYIGQEAVAAGMYSVLQPSDSVI 87

Query:   144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             ++YR+H  ALS G     +++EL G++ G  +G+GGSMH+F+ + N  GG   +G  +P+
Sbjct:    88 TSYREHGFALSSGESPGKIIAELLGRSAGSSKGKGGSMHIFNVQKNFYGGHGIVGAQVPI 147

Query:   204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
              TG AF +KY+           V     GDG  N GQ +E  NMAALWKLP+V+VVENN 
Sbjct:   148 GTGIAFANKYKAN-------GGVVFTCLGDGAINQGQVYEAFNMAALWKLPVVYVVENNE 200

Query:   264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV-REVAKEAIERARRGEGPTLVE 322
             +A+G S  R++    +YK+G + G+PG  VDGMD+ +V REV+ +A    R G GP L+E
Sbjct:   201 YAMGTSVARSSYVSDLYKRGESCGVPGRRVDGMDLFEVIREVS-QAAAHCREGNGPILLE 259

Query:   323 CETYRFRGHSLADPDELR 340
              +TYR+RGHS++DP + R
Sbjct:   260 MKTYRYRGHSMSDPAKYR 277

GO:0004739 "pyruvate dehydrogenase (acetyl-transferring) activity" evidence=ISS

GO:0006086 "acetyl-CoA biosynthetic process from pyruvate" evidence=ISS

GO:0045250 "cytosolic pyruvate dehydrogenase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XTJ3	ODPA3_ORYSJ	1, ., 2, ., 4, ., 1	0.8897	0.7229	0.6141	yes	no
O24457	ODPA3_ARATH	1, ., 2, ., 4, ., 1	0.7947	0.9307	0.7850	yes	no
P51267	ODPA_PORPU	1, ., 2, ., 4, ., 1	0.7205	0.7534	0.7906	N/A	no
Q1XDM0	ODPA_PORYE	1, ., 2, ., 4, ., 1	0.7283	0.7340	0.7658	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.2.4	0.921
4th Layer	1.2.4.1	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
PLN02374	433	PLN02374, PLN02374, pyruvate dehydrogenase (acetyl	0.0
CHL00149	341	CHL00149, odpA, pyruvate dehydrogenase E1 componen	1e-169
TIGR03182	315	TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E	1e-165
cd02000	293	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosph	1e-133
COG1071	358	COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogena	1e-123
pfam00676	303	pfam00676, E1_dh, Dehydrogenase E1 component	1e-108
PLN02269	362	PLN02269, PLN02269, Pyruvate dehydrogenase E1 comp	1e-82
TIGR03181	341	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E	1e-69
cd02012	255	cd02012, TPP_TK, Thiamine pyrophosphate (TPP) fami	3e-10
cd00568	168	cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP)	1e-09
PRK05899	586	PRK05899, PRK05899, transketolase; Reviewed	3e-07
TIGR00232	653	TIGR00232, tktlase_bact, transketolase, bacterial	6e-07
pfam02775	151	pfam02775, TPP_enzyme_C, Thiamine pyrophosphate en	2e-06
COG3959	243	COG3959, COG3959, Transketolase, N-terminal subuni	3e-06
COG0028	550	COG0028, IlvB, Thiamine pyrophosphate-requiring en	8e-06
cd02002	178	cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) fa	1e-05
cd02015	186	cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) fa	3e-05
cd02004	172	cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate	8e-05
PRK07092	530	PRK07092, PRK07092, benzoylformate decarboxylase;	1e-04
COG0021	663	COG0021, TktA, Transketolase [Carbohydrate transpo	1e-04
PRK07710	571	PRK07710, PRK07710, acetolactate synthase catalyti	1e-04
pfam00456	333	pfam00456, Transketolase_N, Transketolase, thiamin	3e-04
cd02005	183	cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP	4e-04
cd02014	178	cd02014, TPP_POX, Thiamine pyrophosphate (TPP) fam	0.001
cd02007	195	cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) fam	0.003
PLN02790	654	PLN02790, PLN02790, transketolase	0.004

>gnl|CDD|215213 PLN02374, PLN02374, pyruvate dehydrogenase (acetyl-transferring)

 Score =  641 bits (1656), Expect = 0.0
 Identities = 281/345 (81%), Positives = 302/345 (87%), Gaps = 3/345 (0%)

Query: 1   MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRR 60
           MA A+++   + P+   S+ +     + L   LK  ++F GST KL  +    N  N RR
Sbjct: 1   MAAAFAATSLLVPVPARSSRDDAPS-SPLRGALKRSSAFTGSTSKL-SSLRGLNAANGRR 58

Query: 61  RLPVVAVSEVVKEKKVKSI-SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFV 119
           R  VVAVS VVKEK  K+  S+LL+T++EGLELYEDM+LGRSFEDMCAQMYYRGKMFGFV
Sbjct: 59  RSTVVAVSAVVKEKNSKASASDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFV 118

Query: 120 HLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG 179
           HLYNGQEAVSTGFIKLLKK+DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG
Sbjct: 119 HLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGG 178

Query: 180 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG 239
           SMHMFSKEHNLLGGFAFIGEGIPVATGAAF+SKYRREVLKE  CD VTLAFFGDGTCNNG
Sbjct: 179 SMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG 238

Query: 240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVL 299
           QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDP+I+KKGPAFGMPG HVDGMDVL
Sbjct: 239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVL 298

Query: 300 KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE 344
           KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDP E
Sbjct: 299 KVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAE 343

Length = 433

>gnl|CDD|177069 CHL00149, odpA, pyruvate dehydrogenase E1 component alpha subunit; Reviewed

 Score =  474 bits (1222), Expect = e-169
 Identities = 198/261 (75%), Positives = 218/261 (83%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           I     L LYEDM+LGR+FEDMCAQMYYRGKMFGFVHLYNGQEAVSTG IKLL + D V 
Sbjct: 17  INSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVC 76

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           STYRDHVHALSKGVP + VM+ELFGK TGC RG+GGSMH+FS  HN LGGFAFIGEGIP+
Sbjct: 77  STYRDHVHALSKGVPPKNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPI 136

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAAF S YR++VLKE     VT  FFGDGT NNGQFFECLNMA LWKLPI+FVVENN 
Sbjct: 137 ALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQ 196

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           WAIGM+H R+TS P+I+KK  AFG+PG  VDGMDVL VREVAKEA+ERAR+G+GPTL+E 
Sbjct: 197 WAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIEA 256

Query: 324 ETYRFRGHSLADPDELRDPGE 344
            TYRFRGHSLADPDELR   E
Sbjct: 257 LTYRFRGHSLADPDELRSKQE 277

Length = 341

>gnl|CDD|234139 TIGR03182, PDH_E1_alph_y, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  463 bits (1194), Expect = e-165
 Identities = 146/259 (56%), Positives = 189/259 (72%), Gaps = 7/259 (2%)

Query: 86  KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVST 145
           K+E LELY DM+L R FE+   Q+Y  GK+ GF HLY GQEAV+ G I  LK +D V+++
Sbjct: 1   KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITS 60

Query: 146 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVAT 205
           YRDH HAL++GVP + VM+EL G+ TGC +G+GGSMHMF +E N  GG   +G  +P+AT
Sbjct: 61  YRDHGHALARGVPPKEVMAELTGRETGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLAT 120

Query: 206 GAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA 265
           G AF +KYR         D+VT  FFGDG  N GQF+E  NMAALWKLP++FV+ENNL+A
Sbjct: 121 GLAFANKYRGN-------DNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNLYA 173

Query: 266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325
           +G +  R++S   +YK+G +FG+PG  VDGMDVL VRE AKEA+ERAR G+GP L+E +T
Sbjct: 174 MGTAVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT 233

Query: 326 YRFRGHSLADPDELRDPGE 344
           YRFRGHS++DP + R   E
Sbjct: 234 YRFRGHSMSDPAKYRSKEE 252

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 315

>gnl|CDD|238958 cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

 Score =  381 bits (980), Expect = e-133
 Identities = 126/254 (49%), Positives = 158/254 (62%), Gaps = 8/254 (3%)

Query: 92  LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVH 151
           LY  M+L R F++   ++Y +GK+ GF HL  GQEAV+ G    L+  D V  TYRDH H
Sbjct: 1   LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGH 60

Query: 152 ALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTS 211
           AL++GV  + +++ELFGK TG C+G+GGSMH+  KE N  GG   +G  +P+A GAA   
Sbjct: 61  ALARGVDLKEMLAELFGKETGPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALAL 120

Query: 212 KYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 271
           KYR E       D V + FFGDG  N G F E LN AALWKLP++FV ENN +AI     
Sbjct: 121 KYRGE-------DRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNGYAISTPTS 173

Query: 272 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331
           R T+   I  +  A+G+PG  VDG DVL V E AKEA+ERAR G GPTL+E  TYR  GH
Sbjct: 174 RQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH 233

Query: 332 SLADPDEL-RDPGE 344
           S +D     R   E
Sbjct: 234 STSDDPSRYRTKEE 247

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine). Length = 293

>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

 Score =  358 bits (922), Expect = e-123
 Identities = 134/272 (49%), Positives = 169/272 (62%), Gaps = 10/272 (3%)

Query: 68  SEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEA 127
              V E    + +   ++K+E LELY  M+L R F++   Q+  +GK+ GF HLY GQEA
Sbjct: 11  GRAVDELPGPNAA---LSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEA 67

Query: 128 VSTGFIKLL-KKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSK 186
           V  G    L   ED +  TYRDH H L++GVP + +M+EL GKATG C+G+GGSMH   K
Sbjct: 68  VQVGAAAALRPGEDWIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDK 127

Query: 187 EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN 246
           E   LGG   +G  IP+A GAA   KYR         D V +AFFGDG  N G F E LN
Sbjct: 128 EKGFLGGSGIVGTQIPLAAGAALALKYRGTK------DGVAVAFFGDGATNQGDFHEALN 181

Query: 247 MAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAK 306
            AA+WKLP+VFV+ENN +AI +   R T+   I  +  A+G+PG  VDG DVL V E AK
Sbjct: 182 FAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAVYEAAK 241

Query: 307 EAIERARRGEGPTLVECETYRFRGHSLADPDE 338
           EA+ERAR GEGPTL+E  TYR+ GHS +D   
Sbjct: 242 EAVERARAGEGPTLIEAVTYRYGGHSTSDDPS 273

Length = 358

>gnl|CDD|201386 pfam00676, E1_dh, Dehydrogenase E1 component

 Score =  318 bits (818), Expect = e-108
 Identities = 109/254 (42%), Positives = 141/254 (55%), Gaps = 10/254 (3%)

Query: 94  EDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHAL 153
             M+  R  ED    +Y R  + GF HLY GQEA+  G    L   D V+ TYRDH + L
Sbjct: 1   YRMMTLRRMEDARDALYQRKGIRGFCHLYAGQEALQVGIAAALNPGDYVIPTYRDHGNLL 60

Query: 154 SKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHN--LLGGFAFIGEGIPVATGAAFTS 211
           ++GV    VM+EL G   GC +G+GGSMH +    N    GG   +G  +P+  G A  +
Sbjct: 61  ARGVSLEQVMAELTGNEAGCSKGKGGSMHGYYAPKNNRFYGGNGIVGAQVPLGAGIALAA 120

Query: 212 KYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL 271
           KYR +         V +  FGDG  N GQFFE LN AALWKLP++FV ENN +AI     
Sbjct: 121 KYRGK-------KEVAITLFGDGATNQGQFFEALNFAALWKLPVIFVCENNQYAISTPAE 173

Query: 272 RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH 331
           R+++      +   +G+PG  VDGMD L V +  K A ERAR G GPTL+E  TYR+ GH
Sbjct: 174 RSSASTTYADRARGYGIPGIRVDGMDPLAVYQAVKFAAERARTGNGPTLIELVTYRYGGH 233

Query: 332 SLADPDEL-RDPGE 344
           S++D     R   E
Sbjct: 234 SMSDDPSTYRTREE 247

This family uses thiamine pyrophosphate as a cofactor. This family includes pyruvate dehydrogenase, 2-oxoglutarate dehydrogenase and 2-oxoisovalerate dehydrogenase. Length = 303

>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit alpha

 Score =  255 bits (653), Expect = 1e-82
 Identities = 117/276 (42%), Positives = 162/276 (58%), Gaps = 25/276 (9%)

Query: 85  TKQEGLELYEDMILGRSFEDMCAQMYYRGKMF-GFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +KQE ++ + DM L R  E + A   Y+ K+  GF HLY+GQEAV+ G    + KED+++
Sbjct: 28  SKQELVDFFRDMYLMRRME-IAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAII 86

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           + YRDH   L +G     V +EL G+  GC RG+GGSMH + K+ N  GG   +G  +P+
Sbjct: 87  TAYRDHCTHLGRGGTVLEVFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPL 146

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             G AF  KY +E       ++V  A +GDG  N GQ FE LN+AALW LP++FV ENN 
Sbjct: 147 GAGLAFAQKYNKE-------ENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH 199

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           + +G +  RA   P  YK+G    +PG  VDGMDVL V++  K A E A    GP ++E 
Sbjct: 200 YGMGTAEWRAAKSPAYYKRGDY--VPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVLEM 256

Query: 324 ETYRFRGHSLADP-------DEL------RDPGEHL 346
           +TYR+ GHS++DP       DE+      RDP E +
Sbjct: 257 DTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERV 292

Length = 362

>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit

 Score =  221 bits (565), Expect = 1e-69
 Identities = 99/263 (37%), Positives = 138/263 (52%), Gaps = 18/263 (6%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           ++ +E +ELY DM+L R F+     +  +G++ G      GQEA   G    L+K+D V 
Sbjct: 21  LSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVF 79

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
            +YRDH   L++GVP   ++    G   G             +  N+L     IG     
Sbjct: 80  PSYRDHAAMLARGVPLVEILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLH 130

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A+  K R E       D+V + +FGDG  + G F+E LN A ++K P+VF V+NN 
Sbjct: 131 AAGVAYALKLRGE-------DNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ 183

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           WAI +   + T+ P + +K  A+G+PG  VDG DVL V  V KEA+ERAR G GPTL+E 
Sbjct: 184 WAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLIEA 243

Query: 324 ETYRFRGHSLAD-PDELRDPGEH 345
            TYR   H+ AD P   R   E 
Sbjct: 244 VTYRLGPHTTADDPTRYRTKEEE 266

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc [Energy metabolism, Pyruvate dehydrogenase]. Length = 341

>gnl|CDD|238970 cd02012, TPP_TK, Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 15/131 (11%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--I 255
           G+G+ VA G A   K           D+      GDG    G  +E  + A  +KL   I
Sbjct: 108 GQGLSVAVGMALAEKLLGF-------DYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLI 160

Query: 256 VFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG 315
             V  N +   G +     ++  + KK  AFG     VDG DV ++      A+E A++ 
Sbjct: 161 AIVDSNRIQIDGPTDDILFTED-LAKKFEAFGWNVIEVDGHDVEEIL----AALEEAKKS 215

Query: 316 EG-PTLVECET 325
           +G PTL+  +T
Sbjct: 216 KGKPTLIIAKT 226

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity. Length = 255

>gnl|CDD|238318 cd00568, TPP_enzymes, Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 42/191 (21%), Positives = 60/191 (31%), Gaps = 40/191 (20%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL--GGFAFIGEGIPVATGA 207
           + AL   +P  A++        G             +    L   GF  +G G+P A GA
Sbjct: 3   LAALRAALPEDAIVVN----DAGNSAYWAYRYLPLRRGRRFLTSTGFGAMGYGLPAAIGA 58

Query: 208 AFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFEC--LNMAALWKLPIVFVVENN--L 263
           A            A  D   +   GDG    G       L  A  + LP++ VV NN   
Sbjct: 59  AL-----------AAPDRPVVCIAGDG----GFMMTGQELATAVRYGLPVIVVVFNNGGY 103

Query: 264 WAIGMSHLRATSDPQIYKK---------GPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314
             I M                         A+G  G  V+        ++   A+  A  
Sbjct: 104 GTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVE-----DPEDLEA-ALAEALA 157

Query: 315 GEGPTLVECET 325
             GP L+E +T
Sbjct: 158 AGGPALIEVKT 168

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes. Length = 168

>gnl|CDD|235639 PRK05899, PRK05899, transketolase; Reviewed

 Score = 51.7 bits (125), Expect = 3e-07
 Identities = 39/134 (29%), Positives = 52/134 (38%), Gaps = 13/134 (9%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADC---DHVTLAFFGDGTCNNGQFFECLNMAALWKLP 254
           G+G+  A G A   KY   +         DH T    GDG    G   E  ++A   KL 
Sbjct: 121 GQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLG 180

Query: 255 --IVFVVENNLWAIGMSHLRATSDPQIYKKG-PAFGMPGFHVDGMDVLKVREVAKEAIER 311
             IV   +N    I +         +  KK   A+G     VDG DV  +      AIE 
Sbjct: 181 NLIVIYDDNR---ISIDGPTEGWFTEDVKKRFEAYGWHVIEVDGHDVEAI----DAAIEE 233

Query: 312 ARRGEGPTLVECET 325
           A+    PTL+  +T
Sbjct: 234 AKASTKPTLIIAKT 247

Length = 586

>gnl|CDD|232887 TIGR00232, tktlase_bact, transketolase, bacterial and yeast

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 15/137 (10%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKL 253
           +G+GI  A G A   K       +      DH T  F GDG    G  +E  ++A   KL
Sbjct: 112 LGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKL 171

Query: 254 P--IVFVVENNLWAIGM-SHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAI 309
              IV    N    I +   +  +    + K+  A+G     V DG D+         AI
Sbjct: 172 GKLIVLYDSNR---ISIDGAVDGSFTEDVAKRFEAYGWEVLEVEDGHDL----AAIDAAI 224

Query: 310 ERARRGEG-PTLVECET 325
           E A+  +  PTL+E  T
Sbjct: 225 EEAKASKDKPTLIEVTT 241

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous [Energy metabolism, Pentose phosphate pathway]. Length = 653

>gnl|CDD|217223 pfam02775, TPP_enzyme_C, Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 39/170 (22%), Positives = 55/170 (32%), Gaps = 35/170 (20%)

Query: 170 ATGCCRGQGGSMHMFSKEHNLL--GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT 227
             GC +      + F      L  GG   +G G+P A GA             A  D   
Sbjct: 1   DIGCHQMWAARYYRFRPPRRYLTSGGLGTMGYGLPAAIGAKL-----------ARPDRPV 49

Query: 228 LAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNLW---------AIGMSHLRA 273
           +A  GDG      F   +N+  L       LPI  VV NN             G      
Sbjct: 50  VAIAGDGG-----FQ--MNLQELATAVRYNLPITVVVLNNGGYGMTRGQQTPFGGGRYSG 102

Query: 274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
                +     A     +   G  V    E+ +EA++ A   +GP L++ 
Sbjct: 103 PDGKDLPPVDFAKLAEAYGAKGARVESPEEL-EEALKEALEHDGPALIDV 151

Length = 151

>gnl|CDD|226468 COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 39/132 (29%), Positives = 57/132 (43%), Gaps = 17/132 (12%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--I 255
           G+G+ VA G A  +K +          +      GDG  + GQ +E    AA +KL   I
Sbjct: 122 GQGLSVAVGMALGAKLKGS-------PYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLI 174

Query: 256 VFVVENNLWAIGMSHLRATSDPQ-IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314
             V  N L   G          + +  K  AFG     VDG D+    E   EA+E+A+ 
Sbjct: 175 AIVDRNKLQLDG--ETEEIMPKEPLADKWEAFGWEVIEVDGHDI----EEIVEALEKAKG 228

Query: 315 GEG-PTLVECET 325
            +G PT++  +T
Sbjct: 229 SKGRPTVIIAKT 240

Length = 243

>gnl|CDD|223107 COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 33/147 (22%), Positives = 49/147 (33%), Gaps = 34/147 (23%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM---- 247
           GG   +G G+P A GA   +  R+            +A  GDG            M    
Sbjct: 405 GGLGTMGFGLPAAIGAKLAAPDRK-----------VVAIAGDG---------GFMMNGQE 444

Query: 248 ---AALWKLPIVFVVENN--LWAIGMSHLRA--TSDPQIYKKGPAFGM--PGFHVDGMDV 298
              A  + LP+  VV NN     +                   P F      +   G+ V
Sbjct: 445 LETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEAYGAKGIRV 504

Query: 299 LKVREVAKEAIERARRGEGPTLVECET 325
               E+ +EA+E A   +GP L++   
Sbjct: 505 ETPEEL-EEALEEALASDGPVLIDVVV 530

Length = 550

>gnl|CDD|238960 cd02002, TPP_BFDC, Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 34/149 (22%), Positives = 49/149 (32%), Gaps = 41/149 (27%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMA--ALW--- 251
           +G G+P A GAA            A+ D   +A  GDG+               ALW   
Sbjct: 51  LGWGLPAAVGAAL-----------ANPDRKVVAIIGDGS---------FMYTIQALWTAA 90

Query: 252 --KLPIVFVVENNL-WAI---GMSHLRATSDPQIYKKGPAFGMP---------GFHVDGM 296
              LP+  V+ NN  +      +  +      +    G     P          F V+  
Sbjct: 91  RYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGVEAE 150

Query: 297 DVLKVREVAKEAIERARRGEGPTLVECET 325
            V    E+  EA+  A    GP L+E   
Sbjct: 151 RVETPEELD-EALREALAEGGPALIEVVV 178

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors. Length = 178

>gnl|CDD|238973 cd02015, TPP_AHAS, Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

 Score = 43.6 bits (104), Expect = 3e-05
 Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 41/149 (27%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG----TCNNGQFFECLNM 247
           GG   +G G+P A GA             A  D   +   GDG              L  
Sbjct: 47  GGLGTMGFGLPAAIGAKV-----------ARPDKTVICIDGDGSFQMNIQE------LAT 89

Query: 248 AALWKLPIVFVVENNLWAIGM-------------SHLRATSDPQIYKKGPAFGMPGFHVD 294
           AA + LP+  V+ NN   +GM             SH    S+P   K   A+G+ G  V+
Sbjct: 90  AAQYNLPVKIVILNNGS-LGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRVE 148

Query: 295 GMDVLKVREVAKEAIERARRGEGPTLVEC 323
                K  E+ + A++ A   +GP L++ 
Sbjct: 149 -----KPEEL-EAALKEALASDGPVLLDV 171

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD. Length = 186

>gnl|CDD|238962 cd02004, TPP_BZL_OCoD_HPCL, Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 38/153 (24%), Positives = 47/153 (30%), Gaps = 45/153 (29%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAAL 250
           G F  +G G+  A  AA            A  D   +   GDG    +G   E    A  
Sbjct: 45  GTFGTLGVGLGYAIAAAL-----------ARPDKRVVLVEGDGAFGFSGMELE---TAVR 90

Query: 251 WKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGP------------------AFGMPGFH 292
           + LPIV VV NN             D Q    G                   AFG  G  
Sbjct: 91  YNLPIVVVVGNN-GGWYQG-----LDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGEL 144

Query: 293 VDGMDVLKVREVAKEAIERARRGEGPTLVECET 325
           V   + L      K A++RA     P L+    
Sbjct: 145 VTTPEEL------KPALKRALASGKPALINVII 171

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity. Length = 172

>gnl|CDD|235931 PRK07092, PRK07092, benzoylformate decarboxylase; Reviewed

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 35/146 (23%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 251
           GG  +   G+P A G A     RR            +   GDG+       + L  AA  
Sbjct: 407 GGLGY---GLPAAVGVALAQPGRR-----------VIGLIGDGSAMYS--IQALWSAAQL 450

Query: 252 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGM--PGFHVD--------GMDVLKV 301
           KLP+ FV+ NN        LR  +   ++      G+  PG  +D        G + ++V
Sbjct: 451 KLPVTFVILNNG---RYGALRWFA--PVFGVRDVPGLDLPG--LDFVALARGYGCEAVRV 503

Query: 302 REVA--KEAIERARRGEGPTLVECET 325
            + A   +A+ RA   +GP LVE E 
Sbjct: 504 SDAAELADALARALAADGPVLVEVEV 529

Length = 530

>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 21/139 (15%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP 254
           G+G+  A G A   K+   +         DH T    GDG    G   E  ++A   KL 
Sbjct: 119 GQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLG 178

Query: 255 --IVFVVENNLWAIGM-SHLRATSDPQIYKKGPAFGMPGFHV----DGMDVLKVREVAKE 307
             IV    N+   I +      +    + K+  A+   G++V    DG D+    E   +
Sbjct: 179 KLIVLYDSND---ISIDGDTSLSFTEDVAKRFEAY---GWNVIRVIDGHDL----EAIDK 228

Query: 308 AIERARRGEG-PTLVECET 325
           AIE A+     PTL+  +T
Sbjct: 229 AIEEAKASTDKPTLIIVKT 247

Length = 663

>gnl|CDD|236076 PRK07710, PRK07710, acetolactate synthase catalytic subunit; Reviewed

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 41/149 (27%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG----TCNNGQFFECLNM 247
           GG   +G G+P A GA             A  D   +A  GDG    T       + L+ 
Sbjct: 421 GGLGTMGFGLPAAIGAQL-----------AKPDETVVAIVGDGGFQMTLQELSVIKELS- 468

Query: 248 AALWKLPIVFVVENNLWAIGM-------------SHLRATSDPQIYKKGPAFGMPGFHVD 294
                LP+  V+ NN  A+GM             SH   +  P   K   A+G+ G  + 
Sbjct: 469 -----LPVKVVILNNE-ALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGVRI- 521

Query: 295 GMDVLKVREVAKEAIERARRGEGPTLVEC 323
                     AKE ++ A   + P +++C
Sbjct: 522 -----DDELEAKEQLQHAIELQEPVVIDC 545

Length = 571

>gnl|CDD|144157 pfam00456, Transketolase_N, Transketolase, thiamine diphosphate binding domain

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 23/146 (15%)

Query: 197 IGEGIPVATGAA-----FTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW 251
           +G+GI  A G A       + Y R      D  H T  F GDG    G   E  ++A   
Sbjct: 114 LGQGIANAVGMAIAEANLAATYNRPGFDIVD--HYTYVFLGDGCLMEGVSSEASSLAGHL 171

Query: 252 KLP--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV----DGMDVLKVREVA 305
           KL   I F  +N +   G + +  T D    K+  A+   G+HV    DG DV    E  
Sbjct: 172 KLGNLIAFYDDNRISIDGETEISFTED--TAKRFEAY---GWHVIEVEDGHDV----EAI 222

Query: 306 KEAIERARRGEG-PTLVECETYRFRG 330
             AIE A+  +  PTL+ C T    G
Sbjct: 223 AAAIEEAKAEKDKPTLIICRTVIGYG 248

This family includes transketolase enzymes EC:2.2.1.1. and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit EC:1.2.4.4. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis. Length = 333

>gnl|CDD|238963 cd02005, TPP_PDC_IPDC, Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 39/143 (27%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG----TCNNGQFFECLNMAALWK 252
           IG  +P A GAA  +  RR            +   GDG    T       E   M   + 
Sbjct: 52  IGYSVPAALGAALAAPDRR-----------VILLVGDGSFQMTVQ-----ELSTMIR-YG 94

Query: 253 L-PIVFVVENNLWAIGMSHLRATSDPQI---------YKKGP-AFGMPGFHVDGMDVLKV 301
           L PI+F++ N+ + I     RA   P+          Y K P  FG  G       V   
Sbjct: 95  LNPIIFLINNDGYTI----ERAIHGPEASYNDIANWNYTKLPEVFG-GGGGGLSFRVKTE 149

Query: 302 REVAKEAIERAR-RGEGPTLVEC 323
            E+  EA++ A    +  +L+E 
Sbjct: 150 GELD-EALKDALFNRDKLSLIEV 171

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors. Length = 183

>gnl|CDD|238972 cd02014, TPP_POX, Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 40/175 (22%), Positives = 60/175 (34%), Gaps = 50/175 (28%)

Query: 178 GGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG--T 235
           G    + S      G  A +G G+P A  A       R+V+          A  GDG   
Sbjct: 40  GKQRFILS------GLLATMGNGLPGAIAAKLAYP-DRQVI----------ALSGDGGFA 82

Query: 236 CNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL--RATSDPQIY---------KKGP 284
              G        A  + LP++ VV NN   +G           P+           K   
Sbjct: 83  MLMGDLI----TAVKYNLPVIVVVFNNS-DLGFIKWEQEVMGQPEFGVDLPNPDFAKIAE 137

Query: 285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDEL 339
           A G+ G  V+  D L      + A++ A   +GP +++  T         DP+E 
Sbjct: 138 AMGIKGIRVEDPDEL------EAALDEALAADGPVVIDVVT---------DPNEP 177

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors. Length = 178

>gnl|CDD|238965 cd02007, TPP_DXS, Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 32/134 (23%), Positives = 52/134 (38%), Gaps = 24/134 (17%)

Query: 201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVE 260
           I  A G A     + +           +A  GDG    G  FE LN A   K  ++ ++ 
Sbjct: 81  ISAALGMAVARDLKGK-------KRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILN 133

Query: 261 NNLWAIGMSHLRATSDPQIYKKGPAFGMPGFH----VDGMDVLKVREVAKEAIERARRGE 316
           +N     MS       P +   G  F   GF     VDG ++  + +V    ++  +  +
Sbjct: 134 DN----EMS-----ISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKV----LKEVKDLK 180

Query: 317 GPTLVECETYRFRG 330
           GP L+   T + +G
Sbjct: 181 GPVLLHVVTKKGKG 194

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6). Length = 195

>gnl|CDD|215424 PLN02790, PLN02790, transketolase

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 38/136 (27%), Positives = 56/136 (41%), Gaps = 12/136 (8%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEADC---DHVTLAFFGDGTCNNGQFFECLNMAALWKL 253
           +G+GI  A G A   K+      + D    DH T    GDG    G   E  ++A  W L
Sbjct: 107 LGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGL 166

Query: 254 P--IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGM--DVLKVREVAKEAI 309
              IV   +N++   G + +  T D  + K+  A G     V     D  ++R   KEA 
Sbjct: 167 GKLIVLYDDNHISIDGDTEIAFTED--VDKRYEALGWHTIWVKNGNTDYDEIRAAIKEAK 224

Query: 310 ERARRGEGPTLVECET 325
               +   PTL++  T
Sbjct: 225 AVTDK---PTLIKVTT 237

Length = 654

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PLN02374	433	pyruvate dehydrogenase (acetyl-transferring)	100.0
COG1071	358	AcoA Pyruvate/2-oxoglutarate dehydrogenase complex	100.0
CHL00149	341	odpA pyruvate dehydrogenase E1 component alpha sub	100.0
TIGR03182	315	PDH_E1_alph_y pyruvate dehydrogenase E1 component,	100.0
KOG0225	394	consensus Pyruvate dehydrogenase E1, alpha subunit	100.0
PLN02269	362	Pyruvate dehydrogenase E1 component subunit alpha	100.0
cd02000	293	TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP)	100.0
TIGR03181	341	PDH_E1_alph_x pyruvate dehydrogenase E1 component,	100.0
PF00676	300	E1_dh: Dehydrogenase E1 component; InterPro: IPR00	100.0
KOG1182	432	consensus Branched chain alpha-keto acid dehydroge	100.0
PRK09404	924	sucA 2-oxoglutarate dehydrogenase E1 component; Re	100.0
cd02016	265	TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) fami	100.0
TIGR00239	929	2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon	100.0
PRK12315	581	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.97
PRK12270	1228	kgd alpha-ketoglutarate decarboxylase; Reviewed	99.96
cd02006	202	TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s	99.93
cd02013	196	TPP_Xsc_like Thiamine pyrophosphate (TPP) family,	99.93
cd02004	172	TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam	99.91
cd02015	186	TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet	99.91
KOG0450	1017	consensus 2-oxoglutarate dehydrogenase, E1 subunit	99.91
cd02010	177	TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto	99.9
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	99.9
cd02003	205	TPP_IolD Thiamine pyrophosphate (TPP) family, IolD	99.9
COG0567	906	SucA 2-oxoglutarate dehydrogenase complex, dehydro	99.9
cd02002	178	TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC	99.89
cd02014	178	TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv	99.89
PRK06163	202	hypothetical protein; Provisional	99.88
cd02012	255	TPP_TK Thiamine pyrophosphate (TPP) family, Transk	99.88
cd02001	157	TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil	99.88
cd02005	183	TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family,	99.87
cd02009	175	TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa	99.87
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	99.87
cd02008	178	TPP_IOR_alpha Thiamine pyrophosphate (TPP) family,	99.87
cd03372	179	TPP_ComE Thiamine pyrophosphate (TPP) family, ComE	99.87
KOG0451	913	consensus Predicted 2-oxoglutarate dehydrogenase,	99.87
TIGR03846	181	sulfopy_beta sulfopyruvate decarboxylase, beta sub	99.87
PRK12474	518	hypothetical protein; Provisional	99.86
PRK06154	565	hypothetical protein; Provisional	99.86
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	99.86
cd02007	195	TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s	99.86
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	99.86
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	99.86
PRK07586	514	hypothetical protein; Validated	99.86
cd03371	188	TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp	99.86
cd00568	168	TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa	99.86
PRK05858	542	hypothetical protein; Provisional	99.86
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	99.86
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	99.86
PRK05899	624	transketolase; Reviewed	99.85
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	99.85
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	99.85
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	99.85
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	99.85
PRK11269	591	glyoxylate carboligase; Provisional	99.85
PRK09124	574	pyruvate dehydrogenase; Provisional	99.85
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	99.85
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	99.85
PRK07524	535	hypothetical protein; Provisional	99.85
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	99.85
PTZ00089	661	transketolase; Provisional	99.85
PF02775	153	TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter	99.85
PRK08273	597	thiamine pyrophosphate protein; Provisional	99.85
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	99.85
cd03375	193	TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o	99.85
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	99.85
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	99.85
PRK08617	552	acetolactate synthase; Reviewed	99.85
PLN02470	585	acetolactate synthase	99.85
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	99.85
PRK06457	549	pyruvate dehydrogenase; Provisional	99.84
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	99.84
PRK06546	578	pyruvate dehydrogenase; Provisional	99.84
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	99.84
PRK08155	564	acetolactate synthase catalytic subunit; Validated	99.84
PRK08611	576	pyruvate oxidase; Provisional	99.84
PRK08322	547	acetolactate synthase; Reviewed	99.84
PRK12754	663	transketolase; Reviewed	99.84
PRK08266	542	hypothetical protein; Provisional	99.83
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	99.83
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	99.83
cd03376	235	TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam	99.83
PRK06112	578	acetolactate synthase catalytic subunit; Validated	99.83
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	99.83
cd02011	227	TPP_PK Thiamine pyrophosphate (TPP) family, Phosph	99.83
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	99.83
PLN02573	578	pyruvate decarboxylase	99.82
PRK07092	530	benzoylformate decarboxylase; Reviewed	99.82
PRK08199	557	thiamine pyrophosphate protein; Validated	99.82
PRK09628	277	oorB 2-oxoglutarate-acceptor oxidoreductase subuni	99.82
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	99.82
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	99.82
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	99.82
PRK12753	663	transketolase; Reviewed	99.81
PRK05444	580	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.81
PRK08327	569	acetolactate synthase catalytic subunit; Validated	99.81
PRK07064	544	hypothetical protein; Provisional	99.81
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	99.8
KOG4166	675	consensus Thiamine pyrophosphate-requiring enzyme	99.8
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	99.8
PLN02790	654	transketolase	99.8
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	99.8
PRK05778	301	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.8
COG3959	243	Transketolase, N-terminal subunit [Carbohydrate tr	99.79
cd02018	237	TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru	99.79
PRK07449	568	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1	99.78
cd02017	386	TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) fam	99.78
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	99.76
PRK12571	641	1-deoxy-D-xylulose-5-phosphate synthase; Provision	99.75
PRK11867	286	2-oxoglutarate ferredoxin oxidoreductase subunit b	99.74
PRK11869	280	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.74
PRK11866	279	2-oxoacid ferredoxin oxidoreductase subunit beta;	99.73
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	99.72
TIGR02177	287	PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta	99.72
TIGR00759	885	aceE pyruvate dehydrogenase E1 component, homodime	99.72
TIGR03186	889	AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S	99.71
PF00456	332	Transketolase_N: Transketolase, thiamine diphospha	99.71
PLN02234	641	1-deoxy-D-xylulose-5-phosphate synthase	99.7
PLN02582	677	1-deoxy-D-xylulose-5-phosphate synthase	99.7
PRK11864	300	2-ketoisovalerate ferredoxin oxidoreductase subuni	99.7
PRK13012	896	2-oxoacid dehydrogenase subunit E1; Provisional	99.68
PRK09405	891	aceE pyruvate dehydrogenase subunit E1; Reviewed	99.63
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	99.63
KOG1185	571	consensus Thiamine pyrophosphate-requiring enzyme	99.62
PRK05261	785	putative phosphoketolase; Provisional	99.62
COG0021	663	TktA Transketolase [Carbohydrate transport and met	99.62
COG1154	627	Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m	99.6
PF13292	270	DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate syn	99.59
COG3961	557	Pyruvate decarboxylase and related thiamine pyroph	99.52
COG3962	617	Acetolactate synthase [Amino acid transport and me	99.47
KOG0523	632	consensus Transketolase [Carbohydrate transport an	99.46
PLN02225	701	1-deoxy-D-xylulose-5-phosphate synthase	99.45
COG3960	592	Glyoxylate carboligase [General function predictio	99.32
PRK11865	299	pyruvate ferredoxin oxidoreductase subunit beta; P	99.28
KOG1184	561	consensus Thiamine pyrophosphate-requiring enzyme	99.09
COG2609	887	AceE Pyruvate dehydrogenase complex, dehydrogenase	98.93
COG1013	294	PorB Pyruvate:ferredoxin oxidoreductase and relate	98.86
PF09364	379	XFP_N: XFP N-terminal domain; InterPro: IPR018970	98.74
COG4231	640	Indolepyruvate ferredoxin oxidoreductase, alpha an	98.28
COG1165	566	MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-car	98.13
cd03377	365	TPP_PFOR_PNO Thiamine pyrophosphate (TPP family),	98.09
COG3957	793	Phosphoketolase [Carbohydrate transport and metabo	98.01
PRK13030	1159	2-oxoacid ferredoxin oxidoreductase; Provisional	97.94
PRK09193	1165	indolepyruvate ferredoxin oxidoreductase; Validate	97.84
PRK13029	1186	2-oxoacid ferredoxin oxidoreductase; Provisional	97.68
TIGR02176	1165	pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid	97.09
PF02776	172	TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter	96.85
cd06586	154	TPP_enzyme_PYR Pyrimidine (PYR) binding domain of	96.8
TIGR03845	157	sulfopyru_alph sulfopyruvate decarboxylase, alpha	96.78
cd07039	164	TPP_PYR_POX Pyrimidine (PYR) binding domain of POX	96.78
cd07035	155	TPP_PYR_POX_like Pyrimidine (PYR) binding domain o	96.74
cd07038	162	TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom	96.26
cd07034	160	TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi	96.1
cd07037	162	TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-	95.55
TIGR03297	361	Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi	95.43
PRK08659	376	2-oxoglutarate ferredoxin oxidoreductase subunit a	95.17
PRK08611	576	pyruvate oxidase; Provisional	94.86
PRK07119	352	2-ketoisovalerate ferredoxin reductase; Validated	94.48
PRK06457	549	pyruvate dehydrogenase; Provisional	94.45
TIGR03254	554	oxalate_oxc oxalyl-CoA decarboxylase. In a number	94.43
COG0028	550	IlvB Thiamine pyrophosphate-requiring enzymes [ace	94.35
PRK07524	535	hypothetical protein; Provisional	93.84
PRK07064	544	hypothetical protein; Provisional	93.77
PRK07525	588	sulfoacetaldehyde acetyltransferase; Validated	93.72
PRK07418	616	acetolactate synthase 3 catalytic subunit; Reviewe	93.69
PRK09259	569	putative oxalyl-CoA decarboxylase; Validated	93.63
PRK07586	514	hypothetical protein; Validated	93.59
PRK08155	564	acetolactate synthase catalytic subunit; Validated	93.54
TIGR01504	588	glyox_carbo_lig glyoxylate carboligase. Glyoxylate	93.51
PRK08199	557	thiamine pyrophosphate protein; Validated	93.49
PRK06466	574	acetolactate synthase 3 catalytic subunit; Validat	93.42
PRK06456	572	acetolactate synthase catalytic subunit; Reviewed	93.41
TIGR03457	579	sulphoacet_xsc sulfoacetaldehyde acetyltransferase	93.4
PRK06112	578	acetolactate synthase catalytic subunit; Validated	93.4
PRK07979	574	acetolactate synthase 3 catalytic subunit; Validat	93.32
PRK06725	570	acetolactate synthase 3 catalytic subunit; Validat	93.27
PLN02470	585	acetolactate synthase	93.13
PRK11269	591	glyoxylate carboligase; Provisional	93.03
PRK08978	548	acetolactate synthase 2 catalytic subunit; Reviewe	93.02
PRK07789	612	acetolactate synthase 1 catalytic subunit; Validat	92.95
PRK08322	547	acetolactate synthase; Reviewed	92.87
PRK07710	571	acetolactate synthase catalytic subunit; Reviewed	92.85
PRK07282	566	acetolactate synthase catalytic subunit; Reviewed	92.79
PRK12474	518	hypothetical protein; Provisional	92.69
TIGR00118	558	acolac_lg acetolactate synthase, large subunit, bi	92.68
TIGR03710	562	OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s	92.67
PRK09124	574	pyruvate dehydrogenase; Provisional	92.66
PRK08366	390	vorA 2-ketoisovalerate ferredoxin oxidoreductase s	92.64
PRK08617	552	acetolactate synthase; Reviewed	92.62
cd07033	156	TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai	92.6
PRK09627	375	oorA 2-oxoglutarate-acceptor oxidoreductase subuni	92.55
PRK06276	586	acetolactate synthase catalytic subunit; Reviewed	92.53
TIGR03394	535	indol_phenyl_DC indolepyruvate/phenylpyruvate deca	92.52
PRK08979	572	acetolactate synthase 3 catalytic subunit; Validat	92.47
PRK08266	542	hypothetical protein; Provisional	92.46
PRK09107	595	acetolactate synthase 3 catalytic subunit; Validat	92.37
TIGR02720	575	pyruv_oxi_spxB pyruvate oxidase. Members of this f	92.33
PRK08273	597	thiamine pyrophosphate protein; Provisional	92.27
PRK06965	587	acetolactate synthase 3 catalytic subunit; Validat	92.25
PRK06882	574	acetolactate synthase 3 catalytic subunit; Validat	92.05
PRK06048	561	acetolactate synthase 3 catalytic subunit; Reviewe	91.97
PF01855	230	POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta	91.65
PRK05858	542	hypothetical protein; Provisional	91.6
PRK07092	530	benzoylformate decarboxylase; Reviewed	91.56
PRK08327	569	acetolactate synthase catalytic subunit; Validated	91.08
PRK08527	563	acetolactate synthase 3 catalytic subunit; Validat	90.79
CHL00099	585	ilvB acetohydroxyacid synthase large subunit	90.79
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	90.7
PRK06546	578	pyruvate dehydrogenase; Provisional	90.31
TIGR02418	539	acolac_catab acetolactate synthase, catabolic. Ace	90.0
PLN02573	578	pyruvate decarboxylase	89.72
PRK08367	394	porA pyruvate ferredoxin oxidoreductase subunit al	89.49
COG0674	365	PorA Pyruvate:ferredoxin oxidoreductase and relate	88.98
PRK09622	407	porA pyruvate flavodoxin oxidoreductase subunit al	88.8
PRK06154	565	hypothetical protein; Provisional	88.46
KOG4166	675	consensus Thiamine pyrophosphate-requiring enzyme	86.57
TIGR00173	432	menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex	86.57
COG4032	172	Predicted thiamine-pyrophosphate-binding protein [	86.13
TIGR03393	539	indolpyr_decarb indolepyruvate decarboxylase, Erwi	83.64
TIGR03336	595	IOR_alpha indolepyruvate ferredoxin oxidoreductase	83.61
PLN02980	1655	2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi	83.39
PF02779	178	Transket_pyr: Transketolase, pyrimidine binding do	82.81
cd01460	266	vWA_midasin VWA_Midasin: Midasin is a member of th	82.3
TIGR00204	617	dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s	81.67
TIGR00232	653	tktlase_bact transketolase, bacterial and yeast. T	81.39

>PLN02374 pyruvate dehydrogenase (acetyl-transferring)

Probab=100.00  E-value=4.6e-69  Score=540.54  Aligned_cols=351  Identities=80%  Similarity=1.237  Sum_probs=315.8

Q ss_pred             CccccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccCccceeecccccCCCCCCcccccchhHHHHHHhhhcc-cc
Q 018048            1 MATAYSSAKFVQPLSLNSTINGRSRDNSLFDPLKTGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVK-SI   79 (361)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   79 (361)
                      |+++|..+++.+++|.+++. .+....+++...++++.|+|++++.+.......+ +..++.++..+.........+ +.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   78 (433)
T PLN02374          1 MAAAFAATSLLVPVPARSSR-DDAPSSPLRGALKRSSAFTGSTSKLSSLRGLNAA-NGRRRSTVVAVSAVVKEKNSKASA   78 (433)
T ss_pred             CccccccccccccccccccC-CCCCCCccccccccchhhhccccccccccCcccc-ccchhcchhcccccccccCCCCCC
Confidence            78889999999999999886 6777788899999999999999997533333333 567777765544443222222 34


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCH
Q 018048           80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA  159 (361)
Q Consensus        80 ~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~  159 (361)
                      .++.+++++++++|+.|+++|.||+++.+++++||++|++|++.||||+++|++.+|+++||++++||+|++.|++|+++
T Consensus        79 ~~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~  158 (433)
T PLN02374         79 SDLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPA  158 (433)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCH
Confidence            55688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCc
Q 018048          160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG  239 (361)
Q Consensus       160 ~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g  239 (361)
                      .++|.|++++.+|.+.|++|++|+.+++.++.+.+++||+++|.|+|+|+|.|++++.+++..++++|||++|||++++|
T Consensus       159 ~~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG  238 (433)
T PLN02374        159 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNG  238 (433)
T ss_pred             HHHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccC
Confidence            99999999999999999999999999999999999999999999999999999987555444578999999999999999


Q ss_pred             chHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCE
Q 018048          240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT  319 (361)
Q Consensus       240 ~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~  319 (361)
                      .|+|+||+|+.|+|||||||+||+|+++++...++..++++++|++||+++++|||+|+++|++++++|+++++++++|+
T Consensus       239 ~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~VDG~D~~av~~a~~~A~~~Ar~g~gP~  318 (433)
T PLN02374        239 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPT  318 (433)
T ss_pred             hHHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence            99999999999999999999999999999888887788999999999999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCCCCCCCHHHHHhHHHhhh
Q 018048          320 LVECETYRFRGHSLADPDELRDPGEHLVLVLFIF  353 (361)
Q Consensus       320 lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~~~~  353 (361)
                      |||+.|||..||+++|++.||+++|++.|...++
T Consensus       319 LIe~~tyR~~GHs~~D~~~YR~~~e~~~~~~~DP  352 (433)
T PLN02374        319 LVECETYRFRGHSLADPDELRDPAEKAHYAARDP  352 (433)
T ss_pred             EEEEEEEecCCcCCCCccccCCHHHHHHHHcCCc
Confidence            9999999999999999999999999999986554

>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=7.9e-69  Score=522.11  Aligned_cols=283  Identities=47%  Similarity=0.744  Sum_probs=263.4

Q ss_pred             hHHHHHHhhhcccccC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCC-cE
Q 018048           66 AVSEVVKEKKVKSISN---LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DS  141 (361)
Q Consensus        66 ~~~~~~~~~~~~~~~~---~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~-D~  141 (361)
                      +.++++.++..+.+..   ..+++++++++|++|+++|.||+++.+++++||+.||+|++.||||+++|++.+|+++ ||
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D~   82 (358)
T COG1071           3 LIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGEDW   82 (358)
T ss_pred             ceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCCE
Confidence            4556666666664433   3689999999999999999999999999999999999999999999999999999965 99


Q ss_pred             EEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048          142 VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA  221 (361)
Q Consensus       142 v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~  221 (361)
                      ++++||+|++.|++|+++.++|.+++|+.+|+++|++|++|+++++.++.++++++|.++|.|+|+|+|.|+++      
T Consensus        83 i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~------  156 (358)
T COG1071          83 IFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRG------  156 (358)
T ss_pred             eecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhC------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999984      


Q ss_pred             CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      ..+++++|++|||+.++|+|||+||+|+.|+|||||||+||+|+||+++..|...+.+..+|.+||+|+++|||+|+++|
T Consensus       157 ~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~~av  236 (358)
T COG1071         157 TKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDVLAV  236 (358)
T ss_pred             CCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCHHHH
Confidence            14559999999999999999999999999999999999999999998887787777788899999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCC-CCCCCHHHHHhHHHhhhc
Q 018048          302 REVAKEAIERARRGEGPTLVECETYRFRGHSLADP-DELRDPGEHLVLVLFIFC  354 (361)
Q Consensus       302 ~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp-~~yR~~~e~~~~~~~~~~  354 (361)
                      ++++++|+++||+++||+|||+.|||+.|||++|| +.||+++|++.|..-+|.
T Consensus       237 y~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~~DPi  290 (358)
T COG1071         237 YEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKKRDPI  290 (358)
T ss_pred             HHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhccChH
Confidence            99999999999999999999999999999999986 899999999999974443

>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed

Probab=100.00  E-value=5.4e-64  Score=492.44  Aligned_cols=272  Identities=73%  Similarity=1.157  Sum_probs=258.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHH
Q 018048           83 LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAV  162 (361)
Q Consensus        83 ~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~  162 (361)
                      .+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++|+++++||+|++.|++|+++.++
T Consensus        16 ~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~   95 (341)
T CHL00149         16 NINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPKNV   95 (341)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchH
Q 018048          163 MSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFF  242 (361)
Q Consensus       163 ~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~  242 (361)
                      |.+++++.+|++.|++|++|+++++.++.+++++||+++|+|+|+++|.|++++..++..++++|||++|||++++|.|+
T Consensus        96 ~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~~~  175 (341)
T CHL00149         96 MAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQFF  175 (341)
T ss_pred             HHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcHHH
Confidence            99999999999999999999999999999999999999999999999999886544444578999999999999999999


Q ss_pred             HHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEE
Q 018048          243 ECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE  322 (361)
Q Consensus       243 eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIe  322 (361)
                      |+|++|++|+||+||||+||+|+++++...+...++++++|++||+++++|||+|++++++++++|+++++++++|+|||
T Consensus       176 Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe  255 (341)
T CHL00149        176 ECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEVDGMDVLAVREVAKEAVERARQGDGPTLIE  255 (341)
T ss_pred             HHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            99999999999999999999999999887777789999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCHHHHHhHHHhhhc
Q 018048          323 CETYRFRGHSLADPDELRDPGEHLVLVLFIFC  354 (361)
Q Consensus       323 v~t~R~~gHs~~Dp~~yR~~~e~~~~~~~~~~  354 (361)
                      +.|||+.||+++||+.||+++|++.|..-++.
T Consensus       256 v~tyR~~gHs~~D~~~YR~~~e~~~~~~~DPi  287 (341)
T CHL00149        256 ALTYRFRGHSLADPDELRSKQEKEAWVARDPI  287 (341)
T ss_pred             EEEecCCCcCCCCCccCCCHHHHHHHhcCCHH
Confidence            99999999999999999999999999965543

>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=2.6e-62  Score=476.33  Aligned_cols=262  Identities=56%  Similarity=0.962  Sum_probs=251.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHH
Q 018048           86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSE  165 (361)
Q Consensus        86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~e  165 (361)
                      +|+++++|+.|+++|.||+++.+++++|+++||+|++.||||+++|++.+|+++||++++||+|++.|++|+++.++|.+
T Consensus         1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~   80 (315)
T TIGR03182         1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE   80 (315)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHH
Q 018048          166 LFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECL  245 (361)
Q Consensus       166 l~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL  245 (361)
                      ++++.+|.+.|++|++|+.+++.++.+.+++||+++|+|+|+++|.|++       +++++|||++|||++++|.|+|+|
T Consensus        81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~-------~~~~~vv~~~GDGa~~~g~~~eal  153 (315)
T TIGR03182        81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYR-------GNDNVTACFFGDGAANQGQFYESF  153 (315)
T ss_pred             HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHh-------CCCCEEEEEeCCCcccccHHHHHH
Confidence            9999999999999999999999999999999999999999999999887       578999999999999999999999


Q ss_pred             HHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          246 NMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       246 ~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      ++|+.+++|+||||+||+|+++++.+.+...++++++|++||+++++|||+|++++++++++|+++++++++|+|||+.|
T Consensus       154 n~A~~~~lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~Vdg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t  233 (315)
T TIGR03182       154 NMAALWKLPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERVDGMDVLAVREAAKEAVERARSGKGPILLEMKT  233 (315)
T ss_pred             HHhhccCcCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEeC
Confidence            99999999999999999999998877777788999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCCCCHHHHHhHHHhhhc
Q 018048          326 YRFRGHSLADPDELRDPGEHLVLVLFIFC  354 (361)
Q Consensus       326 ~R~~gHs~~Dp~~yR~~~e~~~~~~~~~~  354 (361)
                      ||..||+++|++.||+++|++.|..-++.
T Consensus       234 ~R~~gHs~~D~~~Yr~~~e~~~~~~~dPi  262 (315)
T TIGR03182       234 YRFRGHSMSDPAKYRSKEEVEEWRKRDPI  262 (315)
T ss_pred             CcCCCCCCCCccccCCHHHHHHHHhcCHH
Confidence            99999999999999999999999865544

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=2.5e-61  Score=456.24  Aligned_cols=262  Identities=45%  Similarity=0.820  Sum_probs=252.0

Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCC
Q 018048           78 SISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGV  157 (361)
Q Consensus        78 ~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~  157 (361)
                      |+..+.+++++++++|++|+++|+||..+..+|++++|+||+|++.||||+++|+.+++++.|.|+++||+|++.+.+|+
T Consensus        50 p~~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~  129 (394)
T KOG0225|consen   50 PSTSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGV  129 (394)
T ss_pred             CCceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCc
Confidence            56788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc
Q 018048          158 PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN  237 (361)
Q Consensus       158 ~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~  237 (361)
                      ++.++|.||+|+..|++.|.+|+||++.+.  |.++.|++|.++|.+.|+|+|+||++       .+.+++++.|||+.+
T Consensus       130 S~~~v~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~-------~~~v~~alYGDGAaN  200 (394)
T KOG0225|consen  130 SVREVLAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNR-------EDAVCFALYGDGAAN  200 (394)
T ss_pred             cHHHHHHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhcc-------CCceEEEEecccccc
Confidence            999999999999999999999999999875  89999999999999999999999994       578999999999999


Q ss_pred             CcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCC
Q 018048          238 NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEG  317 (361)
Q Consensus       238 ~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~g  317 (361)
                      ||+++|++|+|+.|+||+||||+||.|+++++..+....++|.++. .| +|+++|||.|+++|+++.+.|.+++++++|
T Consensus       201 QGQ~fEa~NMA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG-~y-iPGl~VdGmdvlaVr~a~KfA~~~~~~g~G  278 (394)
T KOG0225|consen  201 QGQVFEAFNMAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRG-DY-IPGLKVDGMDVLAVREATKFAKKYALEGKG  278 (394)
T ss_pred             chhHHHHhhHHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhcc-CC-CCceEECCcchhhHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999998888999999999 45 999999999999999999999999999999


Q ss_pred             CEEEEEEEecCCCCCCCCC-CCCCCHHHHHhHHH
Q 018048          318 PTLVECETYRFRGHSLADP-DELRDPGEHLVLVL  350 (361)
Q Consensus       318 P~lIev~t~R~~gHs~~Dp-~~yR~~~e~~~~~~  350 (361)
                      |.|+|+.|||.+|||.+|| +.||+.||++.-..
T Consensus       279 PilmE~~TYRy~GHSmSDPg~sYRtReEiq~vR~  312 (394)
T KOG0225|consen  279 PILMEMDTYRYHGHSMSDPGTSYRTREEIQEVRQ  312 (394)
T ss_pred             CEEEEEeeeeecccccCCCCcccchHHHHHHHHh
Confidence            9999999999999999999 78999999987653

>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha

Probab=100.00  E-value=1.1e-60  Score=471.30  Aligned_cols=259  Identities=42%  Similarity=0.796  Sum_probs=248.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHH
Q 018048           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA  161 (361)
Q Consensus        82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~  161 (361)
                      ..+++++++++|+.|+++|.||+++.+++++|++.||+|++.||||+++|++.+|+++||++++||+|++.|++|+++.+
T Consensus        25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~  104 (362)
T PLN02269         25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE  104 (362)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch
Q 018048          162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF  241 (361)
Q Consensus       162 ~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~  241 (361)
                      +|.|++++.+|++.|++|++|+++++.++.+.++++|.++|.|+|+|+|.|++       +.+.+++|++|||++++|.|
T Consensus       105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~-------~~~~v~v~~~GDGa~~eG~~  177 (362)
T PLN02269        105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYN-------KEENVAFALYGDGAANQGQL  177 (362)
T ss_pred             HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHh-------CCCCeEEEEECCCCcccCHH
Confidence            99999999999999999999999999999999999999999999999999998       46889999999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEE
Q 018048          242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV  321 (361)
Q Consensus       242 ~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lI  321 (361)
                      ||+||+|+.|+||+||||+||+|+++++...+...+++.+++  +++|+++|||+|+++|+++++.|++++|+ +||+||
T Consensus       178 ~Ealn~A~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~--~~~p~~~VDG~D~~av~~a~~~A~~~aR~-~gP~lI  254 (362)
T PLN02269        178 FEALNIAALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRG--DYVPGLKVDGMDVLAVKQACKFAKEHALS-NGPIVL  254 (362)
T ss_pred             HHHHHHhhccCcCEEEEEeCCCEeccCchhhhccchHHHHhh--cCCCeEEECCCCHHHHHHHHHHHHHHHHh-CCCEEE
Confidence            999999999999999999999999999888887778887654  68999999999999999999999999999 999999


Q ss_pred             EEEEecCCCCCCCCCC-CCCCHHHHHhHHH
Q 018048          322 ECETYRFRGHSLADPD-ELRDPGEHLVLVL  350 (361)
Q Consensus       322 ev~t~R~~gHs~~Dp~-~yR~~~e~~~~~~  350 (361)
                      |+.|||++||+++||+ .||+++|++.|..
T Consensus       255 e~~tyR~~gHs~~D~~~~YR~~~E~~~~~~  284 (362)
T PLN02269        255 EMDTYRYHGHSMSDPGSTYRTRDEISGVRQ  284 (362)
T ss_pred             EEecCcCCCcCCCCCCcccCCHHHHHHHHh
Confidence            9999999999999985 8999999999974

>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC)

Probab=100.00  E-value=1.8e-58  Score=445.35  Aligned_cols=256  Identities=49%  Similarity=0.807  Sum_probs=243.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcC
Q 018048           92 LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT  171 (361)
Q Consensus        92 ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~  171 (361)
                      +|+.|+++|.||+++.+++++||+.||+|++.||||+++|++.+|+++|+++++||+|++.|++|+++.++|.+++++.+
T Consensus         1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~   80 (293)
T cd02000           1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET   80 (293)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhC
Q 018048          172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW  251 (361)
Q Consensus       172 g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~  251 (361)
                      |++.|++|++|+.++..++.+.+|+||+++|+|+|+++|.|+.       +++++|||++|||++++|.|+|+|++|+++
T Consensus        81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~-------~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~  153 (293)
T cd02000          81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYR-------GEDRVAVCFFGDGATNEGDFHEALNFAALW  153 (293)
T ss_pred             CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHh-------CCCCEEEEEeCCCccccchHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998887       578999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCC
Q 018048          252 KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH  331 (361)
Q Consensus       252 ~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gH  331 (361)
                      ++|+||||+||+|+++++...+...+++.+++++||+++++||++|++++++++++|+++++++++|+||||.|+|..||
T Consensus       154 ~lPvi~vv~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~Vdg~d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r~~gH  233 (293)
T cd02000         154 KLPVIFVCENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRVDGNDVLAVYEAAKEAVERARAGGGPTLIEAVTYRLGGH  233 (293)
T ss_pred             CCCEEEEEeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHHHHccCCCEEEEEEEeccCCC
Confidence            99999999999999988877777789999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCCHHHHHhHHHhhhc
Q 018048          332 SLA-DPDELRDPGEHLVLVLFIFC  354 (361)
Q Consensus       332 s~~-Dp~~yR~~~e~~~~~~~~~~  354 (361)
                      +++ ||..||+++|++.|...++.
T Consensus       234 s~~dd~~~Yr~~~e~~~~~~~dpi  257 (293)
T cd02000         234 STSDDPSRYRTKEEVEEWKKRDPI  257 (293)
T ss_pred             CCCCCcccCCCHHHHHHHhcCCHH
Confidence            965 58899999999998865443

PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).

>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit

Probab=100.00  E-value=2.4e-57  Score=445.83  Aligned_cols=255  Identities=38%  Similarity=0.603  Sum_probs=238.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHH
Q 018048           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARA  161 (361)
Q Consensus        82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~  161 (361)
                      +.+++++++++|+.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++|+++++||+|++.|++|+++.+
T Consensus        19 ~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i-~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~h~~~l~~G~~~~~   97 (341)
T TIGR03181        19 PDLSDEELVELYRDMVLTRRFDTKALALQRQGRL-GTYAPNLGQEAAQVGSALALRKDDWVFPSYRDHAAMLARGVPLVE   97 (341)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCce-ecccCCCChHHHHHHHHHHcCCCCEEEcchhhHHHHHHcCCCHHH
Confidence            4689999999999999999999999999999999 899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch
Q 018048          162 VMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF  241 (361)
Q Consensus       162 ~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~  241 (361)
                      +|++++++.+|.        + ..+..++.+.+++||+++|.|+|+|+|.|+.       +++++|||++|||++++|.|
T Consensus        98 ~~ae~~g~~~g~--------~-~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~-------~~~~~vv~~~GDGa~~~g~~  161 (341)
T TIGR03181        98 ILLYWRGDERGS--------W-DPEGVNILPPNIPIGTQYLHAAGVAYALKLR-------GEDNVAVTYFGDGGTSEGDF  161 (341)
T ss_pred             HHHHhcCcCcCC--------C-CchhcCccCCCchHhcchhHHHhHHHHHHhh-------CCCCEEEEEecCCccccChH
Confidence            999999987653        1 1356788899999999999999999998887       58999999999999999999


Q ss_pred             HHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEE
Q 018048          242 FECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLV  321 (361)
Q Consensus       242 ~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lI  321 (361)
                      +|+|+||++|+|||||||+||+|+++++...+...+++.++|++||+++++||++|+++|++++++|+++++++++|+||
T Consensus       162 ~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~av~~a~~~A~~~a~~~~gP~lI  241 (341)
T TIGR03181       162 YEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQVDGNDVLAVYAVTKEAVERARSGGGPTLI  241 (341)
T ss_pred             HHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            99999999999999999999999998876666677899999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCCCCCCC-CCCCCCHHHHHhHHHhhh
Q 018048          322 ECETYRFRGHSLAD-PDELRDPGEHLVLVLFIF  353 (361)
Q Consensus       322 ev~t~R~~gHs~~D-p~~yR~~~e~~~~~~~~~  353 (361)
                      |+.|||..||+++| +..||+++|++.|..-++
T Consensus       242 ev~t~R~~gH~~~D~~~~YR~~~e~~~~~~~Dp  274 (341)
T TIGR03181       242 EAVTYRLGPHTTADDPTRYRTKEEEEEWRKKDP  274 (341)
T ss_pred             EEEeecCCCCCCCCCCccCCCHHHHHHHhcCCH
Confidence            99999999999998 568999999999986444

Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.

>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex

Probab=100.00  E-value=7.8e-56  Score=428.16  Aligned_cols=252  Identities=44%  Similarity=0.707  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCC
Q 018048           93 YEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATG  172 (361)
Q Consensus        93 y~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g  172 (361)
                      |+.|+ +|+||++...++.++++.||+|++.||||++++++.+|+++||++++||+|++.|++|+++.++|.+++++..+
T Consensus         1 y~~m~-~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g   79 (300)
T PF00676_consen    1 YRMML-IRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKG   79 (300)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTS
T ss_pred             CchHH-HHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccC
Confidence            44454 56666666555666667899999999999999999999999999999999999999999999999999999854


Q ss_pred             CcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCC
Q 018048          173 CCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK  252 (361)
Q Consensus       173 ~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~  252 (361)
                      ...+.. +.|...+..++.+..+++|.++|.|+|+|+|.|++       +.+.+++|++|||++++|.|+|+||+|+.|+
T Consensus        80 ~~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~-------~~~~v~v~~~GDga~~qG~~~EalN~A~~~~  151 (300)
T PF00676_consen   80 HGGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYR-------GKDGVVVCFFGDGATSQGDFHEALNLAALWK  151 (300)
T ss_dssp             TTTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHT-------TSSEEEEEEEETGGGGSHHHHHHHHHHHHTT
T ss_pred             CCCCcc-ccccccccceeeeccccccccCccccchhHhhhhc-------CCceeEEEEecCcccccCccHHHHHHHhhcc
Confidence            432222 24455566678899999999999999999999987       5789999999999999999999999999999


Q ss_pred             CCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048          253 LPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (361)
Q Consensus       253 LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (361)
                      |||||||+||+|+|+++...|+...+++++|++||+|+++|||+|+++|++++++|++++|+++||+|||++|||++||+
T Consensus       152 lPvifvveNN~~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs  231 (300)
T PF00676_consen  152 LPVIFVVENNQYAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHS  231 (300)
T ss_dssp             TSEEEEEEEESEETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SS
T ss_pred             CCeEEEEecCCcccccCccccccccchhhhhhccCCcEEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC-CCCCCCHHHHHhHHHhhh
Q 018048          333 LAD-PDELRDPGEHLVLVLFIF  353 (361)
Q Consensus       333 ~~D-p~~yR~~~e~~~~~~~~~  353 (361)
                      ++| |..||+++|++.|....+
T Consensus       232 ~~Dd~~~yr~~~e~~~~~~~~D  253 (300)
T PF00676_consen  232 ESDDPTFYRSPEEYEEWWKKRD  253 (300)
T ss_dssp             TTSCGGGTSHHHHHHHHHHCT-
T ss_pred             CCCCccccCCHHHHHHHHhcCc
Confidence            998 788998999888776633

Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....

>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]

Probab=100.00  E-value=3.6e-52  Score=391.00  Aligned_cols=308  Identities=25%  Similarity=0.375  Sum_probs=289.9

Q ss_pred             CCCcccCccceeecccccCCCCCCcccccchhHHHHHHhhhccc-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 018048           35 TGTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKS-ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRG  113 (361)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~g  113 (361)
                      ....|+|....|. ++++.+|++.  ...++|.+++|+++...+ +..+.++.+-.++||+.|++...+|..+-+-++||
T Consensus        36 ~~~~fpg~ka~ft-~kl~fI~~~d--~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQG  112 (432)
T KOG1182|consen   36 DYKDFPGAKAAFT-SKLEFIQPSD--TPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQG  112 (432)
T ss_pred             hhccCCCCccccc-cceeecCccc--CCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            3678999988888 9999998854  556899999999998874 68899999999999999999999999999999999


Q ss_pred             eeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCC
Q 018048          114 KMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGG  193 (361)
Q Consensus       114 k~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~  193 (361)
                      +| .||.++.|+||+-+|.+++|.+.|+|+++||+.|.+|.+|.++++++.+++|+..+..+|+++.+|+.+++.+|...
T Consensus       113 Ri-SFYmT~~GEEa~higSAAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~ti  191 (432)
T KOG1182|consen  113 RI-SFYMTNFGEEAIHIGSAAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTI  191 (432)
T ss_pred             eE-EEEEeccchhhhhhhhhhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEe
Confidence            99 79999999999999999999999999999999999999999999999999999999999999999999999999989


Q ss_pred             ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc
Q 018048          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA  273 (361)
Q Consensus       194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q  273 (361)
                      ++++..++|.|+|+|+|.|+++      ..++.+||++|||+.++|++|.+||+|+....||||+|-||+|+|++++.+|
T Consensus       192 ssplatqlpqAvGaaYa~k~~~------~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQ  265 (432)
T KOG1182|consen  192 SSPLATQLPQAVGAAYALKMRK------KNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQ  265 (432)
T ss_pred             cchhhhccchhhhhhhhhhhcc------cCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHH
Confidence            9999999999999999998774      3568999999999999999999999999999999999999999999999999


Q ss_pred             cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCC-CCCCCHHHHHhHHHhh
Q 018048          274 TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP-DELRDPGEHLVLVLFI  352 (361)
Q Consensus       274 ~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp-~~yR~~~e~~~~~~~~  352 (361)
                      .....++-++.+||+..++|||+|+++||.++++|-+.+....+|+|||+.|||...||++|+ ++||+.+|++.|-...
T Consensus       266 yr~DGIa~kG~aYGi~sIRVDGnD~lAvYnA~k~ARe~av~e~rPvliEamtYRvGHHSTSDDSt~YRsadEiq~W~~~~  345 (432)
T KOG1182|consen  266 YRGDGIAVKGPAYGIRSIRVDGNDALAVYNAVKEAREMAVTEQRPVLIEAMTYRVGHHSTSDDSTAYRSADEIQYWNKSR  345 (432)
T ss_pred             hcCCceEEeccccceEEEEecCcchHHHHHHHHHHHHHHHhccCchhhhhhhhhhccccCCCccccccchhhhhhhhccc
Confidence            988889999999999999999999999999999999999999999999999999999999985 6899999999997654

>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed

Probab=100.00  E-value=1.2e-47  Score=412.45  Aligned_cols=273  Identities=20%  Similarity=0.245  Sum_probs=238.3

Q ss_pred             hHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHH------hcCCC
Q 018048           66 AVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK------LLKKE  139 (361)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~------~l~~~  139 (361)
                      -.++|.++++|....  .+++++++++|+.|+++|.||+++.+.|.++|+++    +.|||++.++++.      +++..
T Consensus       170 ~er~Wl~~~iE~~~~--~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf~----~eG~Ea~i~gl~~li~~a~~lg~~  243 (924)
T PRK09404        170 EERRWLQQRIESGRP--SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRFS----LEGGESLIPMLDEIIRRAGKLGVK  243 (924)
T ss_pred             HHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc----ccchhhHHHHHHHHHHHHHhCCCC
Confidence            467899999996444  88999999999999999999999999999999974    8999999999988      55588


Q ss_pred             cEEEc-ccCCcchhhcC--CCCHHHHHHHHhcCc--CC-----Ccc----------cCCCccccccccccccCCcccccc
Q 018048          140 DSVVS-TYRDHVHALSK--GVPARAVMSELFGKA--TG-----CCR----------GQGGSMHMFSKEHNLLGGFAFIGE  199 (361)
Q Consensus       140 D~v~~-~yR~~~~~l~~--g~~~~~~~~el~~~~--~g-----~~~----------gd~G~~h~~~~~~~~~~~~g~mG~  199 (361)
                      |+|++ +||+|++.|+.  |+++.++|+|++++.  ++     .++          +++|++|+...     ...+++|.
T Consensus       244 D~vigmaHRgrlnvLa~v~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~-----~npShlea  318 (924)
T PRK09404        244 EIVIGMAHRGRLNVLVNVLGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLA-----FNPSHLEI  318 (924)
T ss_pred             CEEEecCcCchHHHHHHhcCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeecc-----CCcccccc
Confidence            99999 69999999994  999999999999986  22     222          33444444332     24589999


Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccC
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATS  275 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~  275 (361)
                      ..|+|+|+|+|.|+++... ....+.++|+++|||++ ++|.|+|+||+|+.|++|   +||||+||+|+++++...+++
T Consensus       319 v~Pva~G~A~A~q~~~~~~-~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s  397 (924)
T PRK09404        319 VNPVVEGSVRARQDRRGDG-QDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRS  397 (924)
T ss_pred             ccCeehhHHHHHHHhcCCc-ccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhcc
Confidence            9999999999999884210 01122789999999998 699999999999999998   999999999999999888888


Q ss_pred             CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHH
Q 018048          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVL  350 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~  350 (361)
                      ..++.++|++||+|+++|||+|+++|+++++.|++++|+++||+|||++|||.+||+++|+..||+++|.+.|..
T Consensus       398 ~~~~sd~Ak~~giP~~~VDG~D~~AV~~a~~~A~e~~r~g~gPvlIE~~tYR~~GHne~D~p~yr~p~ey~~~~~  472 (924)
T PRK09404        398 TPYCTDVAKMVQAPIFHVNGDDPEAVVFATRLALEYRQKFKKDVVIDLVCYRRHGHNEGDEPSFTQPLMYKKIKK  472 (924)
T ss_pred             chhHHHHHeecCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCcCEEEEEEEecCCCCCCCCCCcCCCHHHHHHHHh
Confidence            888999999999999999999999999999999999999999999999999999999999888999999998864

>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC)

Probab=100.00  E-value=1.6e-45  Score=347.95  Aligned_cols=235  Identities=23%  Similarity=0.316  Sum_probs=209.5

Q ss_pred             HHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCC------CcEEEcc-cCCcchhhc--CCCCHHHHHHHHhcCcC-
Q 018048          102 FEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK------EDSVVST-YRDHVHALS--KGVPARAVMSELFGKAT-  171 (361)
Q Consensus       102 ~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~------~D~v~~~-yR~~~~~l~--~g~~~~~~~~el~~~~~-  171 (361)
                      ||+++.+.|...|+++    ++|+|++.+++..++++      +|+++++ ||++.+.|+  .|++++++|.|++++.+ 
T Consensus         1 ~e~f~~~~f~~~krfs----~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~   76 (265)
T cd02016           1 FEQFLATKFPGQKRFG----LEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEF   76 (265)
T ss_pred             ChhhHHHhcCCCeEEE----ecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCC
Confidence            6889999999988764    89999999999999986      7999998 999999999  99999999999999876 


Q ss_pred             --CCcccCCCcccccccc-----------ccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-c
Q 018048          172 --GCCRGQGGSMHMFSKE-----------HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-N  237 (361)
Q Consensus       172 --g~~~gd~G~~h~~~~~-----------~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~  237 (361)
                        +...++....|+....           .++.++.+++|.++|.|+|+|+|.|+++..  ....+.++||++|||++ +
T Consensus        77 ~~~~~~~gdv~yHlg~~~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~--~~~~~~v~v~~~GDgA~~~  154 (265)
T cd02016          77 PEDDEGSGDVKYHLGYSSDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGD--GERDKVLPILIHGDAAFAG  154 (265)
T ss_pred             CCCCCCCCCcCcCCccCcccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCC--ccCCCeEEEEEecCccccC
Confidence              4344555567876543           345688999999999999999999998421  01146899999999997 5


Q ss_pred             CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc
Q 018048          238 NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR  314 (361)
Q Consensus       238 ~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~  314 (361)
                      +|.|+|+||+|..+++|   +||||+||+|+++++...+++.+++.++|++||+|+++|||+|+++|++++++|++++|+
T Consensus       155 qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~aV~~a~~~A~~~~r~  234 (265)
T cd02016         155 QGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPEAVVRATRLALEYRQK  234 (265)
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999   999999999999999888888889999999999999999999999999999999999999


Q ss_pred             CCCCEEEEEEEecCCCCCCCCCCCCCCH
Q 018048          315 GEGPTLVECETYRFRGHSLADPDELRDP  342 (361)
Q Consensus       315 ~~gP~lIev~t~R~~gHs~~Dp~~yR~~  342 (361)
                      ++||+|||++|||++||+++|+..|+.|
T Consensus       235 g~gp~lIe~~tYR~~GHse~D~p~~t~p  262 (265)
T cd02016         235 FKKDVVIDLVCYRRHGHNELDEPSFTQP  262 (265)
T ss_pred             cCCCEEEEEEEecCCCCCCcCCccccCC
Confidence            9999999999999999999998888765

OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.

>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component

Probab=100.00  E-value=7.5e-42  Score=366.38  Aligned_cols=278  Identities=19%  Similarity=0.233  Sum_probs=239.0

Q ss_pred             hhHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------C
Q 018048           65 VAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------K  138 (361)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~  138 (361)
                      .-.+.|.++++|.+. ...+++++.+.+++.|+.+..||+++.+.|...|+||    .+|.|++..++...++      -
T Consensus       168 ~~~r~Wl~~~iE~~~-~~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip~l~~~i~~~~~~gv  242 (929)
T TIGR00239       168 TEEKRWLQQRIESGE-RAQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKRFS----LEGLDALVPMLKEIIRHSVNSGT  242 (929)
T ss_pred             HHHHHHHHHHHhCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCceee----cccHHHHHHHHHHHHHHHHHcCC
Confidence            345789999999766 7899999999999999999999999999999999986    8999999877655554      5


Q ss_pred             CcEEEcc-cCCcchhhc--CCCCHHHHHHHHhcCcCCC-cccCCCc-ccccc-----------ccccccCCccccccccH
Q 018048          139 EDSVVST-YRDHVHALS--KGVPARAVMSELFGKATGC-CRGQGGS-MHMFS-----------KEHNLLGGFAFIGEGIP  202 (361)
Q Consensus       139 ~D~v~~~-yR~~~~~l~--~g~~~~~~~~el~~~~~g~-~~gd~G~-~h~~~-----------~~~~~~~~~g~mG~~lP  202 (361)
                      .|+|+++ ||++.+.|+  .|.+++++|.|+.++..+. +.|.+.. .|+..           ...++.++.++++...|
T Consensus       243 ~d~v~gmaHRGRlnvL~nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~P  322 (929)
T TIGR00239       243 RDVVLGMAHRGRLNVLVNVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSP  322 (929)
T ss_pred             CeEEeccccCCcHHHHHHHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccc
Confidence            7999997 999999999  8999999999999987653 2233333 56662           12345688999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCCe---EEEEEcCCcccccccccccCCcc
Q 018048          203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPI---VFVVENNLWAIGMSHLRATSDPQ  278 (361)
Q Consensus       203 ~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPv---i~VV~NN~y~is~~~~~q~~~~d  278 (361)
                      +|+|.++|.|+++... ....+.++||++|||++ ++|.|+|+||+|+.|++|+   ||||+||+|+++++...+++.+.
T Consensus       323 va~G~ArA~q~~~~~~-~~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~  401 (929)
T TIGR00239       323 VVIGSTRARLDRLNDS-PESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPY  401 (929)
T ss_pred             hhhhHHHHHHHhcCCc-ccccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccC
Confidence            9999999999884210 11236799999999997 7999999999999999997   99999999999998777777788


Q ss_pred             hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCC-CCCHHHHHhHH
Q 018048          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE-LRDPGEHLVLV  349 (361)
Q Consensus       279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~-yR~~~e~~~~~  349 (361)
                      +.++|++||+|+++|||+|+++|+++++.|++++|+++||+|||++|||.+||+++|+.. ||+ ++.+.|.
T Consensus       402 ~sd~Ak~ygiP~~~VDG~D~~AV~~a~~~Ave~~r~g~gPvlIE~~tYR~~GHne~D~p~~yrp-~~~~~i~  472 (929)
T TIGR00239       402 CSDLAKMIQAPIFHVNADDPEAVAFATRLAVEYRNTFKRDVFIDLVGYRRHGHNEADEPSATQP-LMYQKIK  472 (929)
T ss_pred             HHHHheecCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccCCCCCCCCCCccCCH-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999655 887 5555554

The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.

>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.97  E-value=1.4e-29  Score=264.76  Aligned_cols=204  Identities=23%  Similarity=0.233  Sum_probs=171.1

Q ss_pred             HHHhcCeeceeeecCCCchhHHHHHHHhcC---CCcEEE--cccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccc
Q 018048          108 QMYYRGKMFGFVHLYNGQEAVSTGFIKLLK---KEDSVV--STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMH  182 (361)
Q Consensus       108 ~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~---~~D~v~--~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h  182 (361)
                      -++..++..|+++++.|+  +.++++.++.   +.|+++  +.||+|++.|.+|.++..++.++.++..|.+.+.++ .|
T Consensus        31 ~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~l~~G~~~~~~~~~~~g~~~G~~~~~~s-~~  107 (581)
T PRK12315         31 LLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHKMLTGRKEAFLDPDHYDDVTGYTNPEES-EH  107 (581)
T ss_pred             HHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHHHHcCCccchhhHHHcCCCCCCCCCCCC-CC
Confidence            344567788999999999  4555565666   899998  899999999999999999999999999988776553 33


Q ss_pred             cccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcC
Q 018048          183 MFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN  262 (361)
Q Consensus       183 ~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN  262 (361)
                      .+       ...|+.|.++|+|+|+|+|.+++       +.+.+|||++|||++++|.+||+||+|+.|++|+|+||+||
T Consensus       108 ~~-------~~~g~~~~~ls~A~G~A~A~k~~-------~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii~dN  173 (581)
T PRK12315        108 DF-------FTVGHTSTSIALATGLAKARDLK-------GEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIVNDN  173 (581)
T ss_pred             CC-------cCCCcHHHHHHHHHHHHHHHHhc-------CCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEEECC
Confidence            21       25588899999999999998887       46789999999999999999999999999999999999999


Q ss_pred             Ccccccccc---------cccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048          263 LWAIGMSHL---------RATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (361)
Q Consensus       263 ~y~is~~~~---------~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (361)
                      +|+++.+..         .+....++.+++++||++++.| ||+|+.++++++++    +++.++|++|+++|+|..|..
T Consensus       174 ~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~~v~DG~D~~~l~~a~~~----a~~~~gP~~i~~~T~kG~G~~  249 (581)
T PRK12315        174 QMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYRYVEDGNDIESLIEAFKE----VKDIDHPIVLHIHTLKGKGYQ  249 (581)
T ss_pred             CCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEEEeeCCCCHHHHHHHHHH----HHhCCCCEEEEEEeecCCCCC
Confidence            999986653         1223445678899999999998 99999988776655    566789999999999999975

>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed

Probab=99.96  E-value=2.3e-27  Score=250.26  Aligned_cols=275  Identities=20%  Similarity=0.236  Sum_probs=222.3

Q ss_pred             HHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCc
Q 018048           67 VSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KED  140 (361)
Q Consensus        67 ~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D  140 (361)
                      -+-|.+++++.  -+...+.++-+.+++++.-+..||.++.+.|-..|+|    +.+|.|.+..-+-..|.      -+.
T Consensus       475 qr~W~Q~rvE~--~~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqkRF----slEG~Es~iplld~~~~~aa~~~l~e  548 (1228)
T PRK12270        475 QRRWLQERVER--PHEKPTREEQKRILSKLNAAEAFETFLQTKYVGQKRF----SLEGGESLIPLLDAVLDQAAEHGLDE  548 (1228)
T ss_pred             HHHHHHHHhhC--CCCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccceee----eecchhhHHHHHHHHHHHHHhcCCce
Confidence            35688888887  4566689999999999999999999999999999987    48899988665555554      245


Q ss_pred             EEEc-ccCCcchhhc--CCCCHHHHHHHHhcCcCCC---cccCCCcccccccc-------c----cccCCccccccccHH
Q 018048          141 SVVS-TYRDHVHALS--KGVPARAVMSELFGKATGC---CRGQGGSMHMFSKE-------H----NLLGGFAFIGEGIPV  203 (361)
Q Consensus       141 ~v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~g~---~~gd~G~~h~~~~~-------~----~~~~~~g~mG~~lP~  203 (361)
                      +|++ .||++.+.|+  .|.+..++|.|+.|+.+..   .+||.- .|+....       .    .+..+.++|..--|+
T Consensus       549 vvigm~HRGRLNVLani~gK~y~qiF~EFegn~dp~~~~GsGDVK-YHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpV  627 (1228)
T PRK12270        549 VVIGMAHRGRLNVLANIVGKPYSQIFREFEGNLDPRSAQGSGDVK-YHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPV  627 (1228)
T ss_pred             EEecccccchHHHHHHHhcCCHHHHHHHhcCCCCccccCcCccee-eeccCceeeeccCCCeeEEEEecCchhhhhcchH
Confidence            7777 6999999998  4889999999999987632   223332 2443211       1    124677899999999


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcch
Q 018048          204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       204 AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      .-|...|.|..-..+. .+-....|+++||++|. +|.+.|.||++..+++|   +|+||+||+|++++.....++....
T Consensus       628 leGivRakQd~l~~g~-~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~  706 (1228)
T PRK12270        628 LEGIVRAKQDRLDKGE-EGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYA  706 (1228)
T ss_pred             hhhhhhhhhhhhcccc-cCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhh
Confidence            9999999776643111 12345679999999987 99999999999999999   9999999999999987777777788


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC------CCCCCCHHHHHhHH
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD------PDELRDPGEHLVLV  349 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D------p~~yR~~~e~~~~~  349 (361)
                      .++|+++++|+++|||+|+++++.+.+.|+++.+++++|++||++|||.+||++.|      |..||.-+++....
T Consensus       707 td~ak~~~~PifhVNGdDpeAv~~va~lA~~yr~~f~~dVvIdlvcYRrrGHNEgDdPSmtqP~mY~~i~~~~svr  782 (1228)
T PRK12270        707 TDVAKMIQAPIFHVNGDDPEAVVRVARLAFEYRQRFHKDVVIDLVCYRRRGHNEGDDPSMTQPLMYDLIDAKRSVR  782 (1228)
T ss_pred             HHHHhhcCCCEEeECCCCHHHHHHHHHHHHHHHHHcCCCeEEEEEEEeecCCCCCCCcccCCchhhhhhhhcchHH
Confidence            88999999999999999999999999999999999999999999999999997765      33577666554443

>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl)

Probab=99.93  E-value=1e-25  Score=206.20  Aligned_cols=158  Identities=20%  Similarity=0.194  Sum_probs=123.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      +++|..+++++....++  ++..|.|.+.+|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus         7 ~l~~~~~~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la-----------~p~   75 (202)
T cd02006           7 PIKPQRVYEEMNKAFGRDVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAA-----------DPD   75 (202)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhh-----------CCC
Confidence            47899999999888774  4667778765542       23333  45689999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc----------------------CCcchhhc
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKK  282 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~----------------------~~~d~~~~  282 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.++.|.                      ..+||+++
T Consensus        76 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpviivV~NN~-~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l  152 (202)
T cd02006          76 RQVVALSGDYDFQFM--IEELAVGAQHRIPYIHVLVNNA-YLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDHVKV  152 (202)
T ss_pred             CeEEEEEeChHhhcc--HHHHHHHHHhCCCeEEEEEeCc-hHHHHHHHHHHhcCccccccccccccccccCCCCCCHHHH
Confidence            999999999999999  8999999999999999999998 4444332110                      14899999


Q ss_pred             cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      |++||+++.+|+..+  ++.+++++|++.+++.++|+||||.+.+..
T Consensus       153 A~a~G~~~~~v~~~~--el~~al~~a~~~~~~~~~p~liev~i~~~~  197 (202)
T cd02006         153 AEGLGCKAIRVTKPE--ELAAAFEQAKKLMAEHRVPVVVEAILERVT  197 (202)
T ss_pred             HHHCCCEEEEECCHH--HHHHHHHHHHHhcccCCCcEEEEEEecccc
Confidence            999999999998765  655555555443334689999999996654

E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.

>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc)

Probab=99.93  E-value=1.4e-25  Score=204.44  Aligned_cols=157  Identities=22%  Similarity=0.215  Sum_probs=122.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      +++|.+++.++....++  ++..|.|.+..|.       .+.++  .+++++||+++|+|+|+++|           .|+
T Consensus         3 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~   71 (196)
T cd02013           3 PMHPRQVLRELEKAMPEDAIVSTDIGNICSVANSYLRFEKPRSFIAPLSFGNCGYALPAIIGAKAA-----------APD   71 (196)
T ss_pred             CCCHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHh-----------CCC
Confidence            46788999998887764  4667777755442       23344  35789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~  292 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..            ....+||.++|++||+++++
T Consensus        72 r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~  148 (196)
T cd02013          72 RPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNR-QWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAKGIT  148 (196)
T ss_pred             CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCEEEE
Confidence            999999999999998  9999999999999999999887 44443321            12358999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      |+..+  ++..++++|++.++ .++|+||||.+++..
T Consensus       149 v~~~~--el~~al~~a~~~~~-~~~p~liev~v~~~~  182 (196)
T cd02013         149 VDKPE--DVGPALQKAIAMMA-EGKTTVIEIVCDQEL  182 (196)
T ss_pred             ECCHH--HHHHHHHHHHhcCC-CCCeEEEEEEeCccc
Confidence            98754  66555555544322 589999999997654

Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.

>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL)

Probab=99.91  E-value=1.4e-24  Score=193.39  Aligned_cols=147  Identities=28%  Similarity=0.325  Sum_probs=112.1

Q ss_pred             HHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048          160 RAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL  228 (361)
Q Consensus       160 ~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv  228 (361)
                      .++++++....++  ++..|.|....|.       .+.++  .++.|+||+++|+|+|+++|           .++++|+
T Consensus         2 ~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~AiGa~la-----------~~~~~vv   70 (172)
T cd02004           2 YRVLHELQEALPDDAIIVSDGGNTMDWARYILRPRKPRHRLDAGTFGTLGVGLGYAIAAALA-----------RPDKRVV   70 (172)
T ss_pred             HHHHHHHHHHCCCCcEEEEcCchHHHHHHHHccccCCCcEecCCCCCcccchHHHHHHHHHh-----------CCCCeEE
Confidence            4566667666653  3556666544332       23333  45789999999999999999           7899999


Q ss_pred             EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc-----------ccCCcchhhccccCCccEEEEeCC
Q 018048          229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHVDGM  296 (361)
Q Consensus       229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~Vdg~  296 (361)
                      |++|||+|+|+  .++|+||+++++|+++||.||+ |++....+.           ....+|+.++|++||+++.+|++.
T Consensus        71 ~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~  148 (172)
T cd02004          71 LVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGGKGELVTTP  148 (172)
T ss_pred             EEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCCeEEEECCH
Confidence            99999999998  8999999999999999998886 554322111           124679999999999999999863


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          297 DVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       297 D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                        .+    +++|++.+++.++|+||||.+
T Consensus       149 --~e----l~~al~~a~~~~~p~liev~i  171 (172)
T cd02004         149 --EE----LKPALKRALASGKPALINVII  171 (172)
T ss_pred             --HH----HHHHHHHHHHcCCCEEEEEEc
Confidence              34    556666666778999999986

Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.

>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS

Probab=99.91  E-value=1.1e-24  Score=196.70  Aligned_cols=150  Identities=27%  Similarity=0.459  Sum_probs=118.6

Q ss_pred             CHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048          158 PARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (361)
Q Consensus       158 ~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~  226 (361)
                      +|.+++++|....++  ++..|.|+...|.       .+.++  .+++++||+++|+|+|+++|           .++++
T Consensus         2 ~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~~~~~   70 (186)
T cd02015           2 KPQEVIKELSELTPGDAIVTTDVGQHQMWAAQYYRFKKPRSWLTSGGLGTMGFGLPAAIGAKVA-----------RPDKT   70 (186)
T ss_pred             CHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhchHHHHHHHHHh-----------CCCCe
Confidence            567788888877764  4556767654432       23344  35679999999999999999           68899


Q ss_pred             EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc-------------cccCCcchhhccccCCccEEEE
Q 018048          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------------RATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-------------~q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ||+++|||+|+|+  .+||.||+++++|+++||.||+ +++..+.             .....+||.++|++||+++++|
T Consensus        71 vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v  147 (186)
T cd02015          71 VICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNG-SLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGIKGLRV  147 (186)
T ss_pred             EEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCCceEEe
Confidence            9999999999998  8999999999999999999998 3333221             0113579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ++.+      ++++|++++++.++|+||||.+++
T Consensus       148 ~~~~------el~~al~~a~~~~~p~liev~~~~  175 (186)
T cd02015         148 EKPE------ELEAALKEALASDGPVLLDVLVDP  175 (186)
T ss_pred             CCHH------HHHHHHHHHHhCCCCEEEEEEeCC
Confidence            9854      567777777778999999999975

AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.

>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=99.91  E-value=1.3e-23  Score=214.13  Aligned_cols=261  Identities=20%  Similarity=0.252  Sum_probs=219.2

Q ss_pred             HHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCc
Q 018048           67 VSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KED  140 (361)
Q Consensus        67 ~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D  140 (361)
                      -.+|.+++++.|. ...+++|+.+-+|.++.++-.||+++.+.|..-|+||    .+|.|.+..|+...++      .++
T Consensus       230 qcnWir~k~EtP~-~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRFG----LEGcE~lIP~mK~iiDrS~elGVe~  304 (1017)
T KOG0450|consen  230 QCNWIRQKFETPG-PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRFG----LEGCEVLIPAMKTIIDRSSELGVES  304 (1017)
T ss_pred             HhHHHHHhccCCC-ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCcccccc----ccchhhhhhHHHHHhhhhhhcCchh
Confidence            3588999999954 7788999999999999999999999999999999998    8899999888887776      367


Q ss_pred             EEEc-ccCCcchhhcCC--CCHHHHHHHHhcCcC-CCcccCCCcccccc---ccc---------cccCCccccccccHHH
Q 018048          141 SVVS-TYRDHVHALSKG--VPARAVMSELFGKAT-GCCRGQGGSMHMFS---KEH---------NLLGGFAFIGEGIPVA  204 (361)
Q Consensus       141 ~v~~-~yR~~~~~l~~g--~~~~~~~~el~~~~~-g~~~gd~G~~h~~~---~~~---------~~~~~~g~mG~~lP~A  204 (361)
                      +|++ .||++.+.|+.-  .++++++.++.+..+ +..+||.- .|+..   ++.         ....+.+++...-|+.
T Consensus       305 iviGMpHRGRLNvL~NVvRKpl~qIfseF~g~~~~DeGSGDVK-YHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV  383 (1017)
T KOG0450|consen  305 IVIGMPHRGRLNVLANVVRKPLEQIFSEFSGLEAADEGSGDVK-YHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVV  383 (1017)
T ss_pred             eEecCCccchhHHHHHHHhhHHHHHHHhccCCCCCcCCCCcee-eeeccccccccccCCceeEEEEecCchhhcccCcee
Confidence            8888 599999998753  478899999888443 23445543 24432   121         1246789999999999


Q ss_pred             HHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcchh
Q 018048          205 TGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       205 iGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      +|-..|.++.....  .+.+...|.++||++|. +|.++|.+.+...-+.-   .|+||.||+.++++.....++.|...
T Consensus       384 ~GKtrA~q~y~~D~--~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTDPR~aRSspYcT  461 (1017)
T KOG0450|consen  384 MGKTRAEQFYTGDE--EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTDPRFARSSPYCT  461 (1017)
T ss_pred             echHHHHHHhcccc--ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccCcccccCCCCch
Confidence            99999999886433  24556779999999999 99999998876543332   89999999999988877778888999


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD  335 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D  335 (361)
                      ++|++.++|.++|+++|+++|..+++-|.++...+++.++|+++|||..||++.|
T Consensus       462 Dvar~v~aPIFHVNaDD~EAV~~vc~vAAeWR~tFh~DvVVDlVcyRR~GHNE~D  516 (1017)
T KOG0450|consen  462 DVARVVNAPIFHVNADDPEAVMHVCKVAAEWRKTFHKDVVVDLVCYRRHGHNEID  516 (1017)
T ss_pred             hHHHHhCCCeEeecCCChHHHHHHHHHHHHHHHHhccCeEEEEEEEeecCCCccc
Confidence            9999999999999999999999999999999999999999999999999999998

>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation

Probab=99.90  E-value=6.4e-24  Score=190.68  Aligned_cols=148  Identities=22%  Similarity=0.363  Sum_probs=112.4

Q ss_pred             HHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048          160 RAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL  228 (361)
Q Consensus       160 ~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv  228 (361)
                      .+++.++...+++  +...|.|+...|.       ++.++  .+++++||+++|+|+|+++|           .++++||
T Consensus         2 ~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~~~~~vv   70 (177)
T cd02010           2 QRIVHDLRAVMGDDDIVLLDVGAHKIWMARYYRTYAPNTCLISNGLATMGVALPGAIGAKLV-----------YPDRKVV   70 (177)
T ss_pred             HHHHHHHHHHCCCCcEEEecCcHHHHHHHHhCCcCCCCCEEeCCCChhhhhHHHHHHHHHHh-----------CCCCcEE
Confidence            3455666555543  3555666543332       12333  46789999999999999999           7899999


Q ss_pred             EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEEeCCC
Q 018048          229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHVDGMD  297 (361)
Q Consensus       229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~Vdg~D  297 (361)
                      +++|||+|+|+  .++|.|++++++|+++||.||+ +++..+..|           ...+||.++|++||+++++|+..+
T Consensus        71 ~i~GDG~f~m~--~~eL~ta~~~~l~vi~vV~NN~-~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~  147 (177)
T cd02010          71 AVSGDGGFMMN--SQELETAVRLKIPLVVLIWNDN-GYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKGYRIESAD  147 (177)
T ss_pred             EEEcchHHHhH--HHHHHHHHHHCCCeEEEEEECC-cchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEEEEECCHH
Confidence            99999999998  8999999999999999999887 444332111           135799999999999999998654


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          298 VLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                        +    ++++++++++.++|+||||.+.+
T Consensus       148 --e----l~~al~~a~~~~~p~liev~~~~  171 (177)
T cd02010         148 --D----LLPVLERALAADGVHVIDCPVDY  171 (177)
T ss_pred             --H----HHHHHHHHHhCCCCEEEEEEecc
Confidence              4    45666666778899999999965

ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=99.90  E-value=9e-24  Score=219.55  Aligned_cols=215  Identities=20%  Similarity=0.256  Sum_probs=156.4

Q ss_pred             hhHHHHHHhhhcccccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCC--CcE
Q 018048           65 VAVSEVVKEKKVKSISNLLIT-KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK--EDS  141 (361)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~--~D~  141 (361)
                      .|-.|+|..++.| ..++++. ..|+...++.|+  ..++..                    ...|.......++  .+.
T Consensus       293 ii~iDidp~ei~k-~~~~~~~i~gD~~~~l~~L~--~~l~~~--------------------~~~~~~~~~~~~~~~~~~  349 (550)
T COG0028         293 IIHIDIDPAEIGK-NYPVDVPIVGDAKATLEALL--EELKPE--------------------RAAWLEELLEARAAYRDL  349 (550)
T ss_pred             EEEEeCChHHhCC-CCCCCeeEeccHHHHHHHHH--Hhhhhc--------------------chHHHHHHHHHHHhhhhh
Confidence            7889999999999 4556666 557777777666  333211                    0001111111110  111


Q ss_pred             EEcccCCcchhhcCCCCHHHHHHHHhcCcCC--CcccCCCccccccc-------cccc--cCCccccccccHHHHHHHHH
Q 018048          142 VVSTYRDHVHALSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EHNL--LGGFAFIGEGIPVATGAAFT  210 (361)
Q Consensus       142 v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-------~~~~--~~~~g~mG~~lP~AiGaA~A  210 (361)
                      .....   ...   ...|.+++..+....++  +++.|.|++.+|..       ++++  ++++|+||+++|+|||++++
T Consensus       350 ~~~~~---~~~---~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaAIGAkla  423 (550)
T COG0028         350 ALEEL---ADD---GIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAAIGAKLA  423 (550)
T ss_pred             hhhcc---CCC---ccCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCcEEcCCCCccccchHHHHHHHHhh
Confidence            11110   000   11577888888887774  67889999888742       3343  57899999999999999999


Q ss_pred             HHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccC-----------Ccc-
Q 018048          211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS-----------DPQ-  278 (361)
Q Consensus       211 ~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~-----------~~d-  278 (361)
                                 .|+++|||++|||+|+|+  .+||.||+++++||++||.||+ ++++.++.|..           ... 
T Consensus       424 -----------~P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~-~~g~v~~~q~~~~~~~~~~~~~~~~~  489 (550)
T COG0028         424 -----------APDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNG-GYGMVRQWQELFYGGRYSGTDLGNPD  489 (550)
T ss_pred             -----------CCCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECC-ccccchHHHHHhcCCCcceeecCCcc
Confidence                       789999999999999999  9999999999999999999999 66666554421           112 


Q ss_pred             hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      |.++|++||+++++|+..+      +++++++++++.++|+||||.+++.
T Consensus       490 f~klAea~G~~g~~v~~~~------el~~al~~al~~~~p~lidv~id~~  533 (550)
T COG0028         490 FVKLAEAYGAKGIRVETPE------ELEEALEEALASDGPVLIDVVVDPE  533 (550)
T ss_pred             HHHHHHHcCCeeEEeCCHH------HHHHHHHHHHhCCCCEEEEEEecCc
Confidence            9999999999999999554      4577888888899999999999876

>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv

Probab=99.90  E-value=1.6e-23  Score=192.21  Aligned_cols=148  Identities=18%  Similarity=0.153  Sum_probs=111.2

Q ss_pred             HHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEE
Q 018048          162 VMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF  230 (361)
Q Consensus       162 ~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~  230 (361)
                      ++.+|....++  ++..|.|++.+|.       .+.++  .+++|+||+++|+|+|+++|           .|+++|||+
T Consensus         4 ~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lpaAiGa~la-----------~p~~~vv~i   72 (205)
T cd02003           4 VLGALNEAIGDDDVVINAAGSLPGDLHKLWRARTPGGYHLEYGYSCMGYEIAAGLGAKLA-----------KPDREVYVL   72 (205)
T ss_pred             HHHHHHHhCCCCCEEEECCCcchHHHHHhCCcCCCCcEEcCCCcchhhhHHHHHHHHHHh-----------CCCCeEEEE
Confidence            44555554442  4556666554432       23334  36789999999999999999           789999999


Q ss_pred             ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------------------cCCcchhhcccc
Q 018048          231 FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------------------TSDPQIYKKGPA  285 (361)
Q Consensus       231 ~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------------------~~~~d~~~~A~a  285 (361)
                      +|||+|+|+  .++|.||+++++|+++||.||+ ++++.+..|                         ...+||.++|++
T Consensus        73 ~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a  149 (205)
T cd02003          73 VGDGSYLML--HSEIVTAVQEGLKIIIVLFDNH-GFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLPVDFAANARS  149 (205)
T ss_pred             Eccchhhcc--HHHHHHHHHcCCCCEEEEEECC-ccHHHHHHHHHhcCccccchhcccccccccccCCCCCCCHHHHHHh
Confidence            999999998  8999999999999999999887 333322100                         124799999999


Q ss_pred             CCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          286 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       286 ~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      ||+++++|+..  .+    +++|++++++.++|+||||.+.+..
T Consensus       150 ~G~~~~~v~~~--~e----l~~al~~a~~~~gp~lIeV~v~~~~  187 (205)
T cd02003         150 LGARVEKVKTI--EE----LKAALAKAKASDRTTVIVIKTDPKS  187 (205)
T ss_pred             CCCEEEEECCH--HH----HHHHHHHHHhCCCCEEEEEEeeccc
Confidence            99999999754  35    4566666677889999999997643

viciae IolD. IolD plays an important role in myo-inositol catabolism.

>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]

Probab=99.90  E-value=1.8e-22  Score=213.27  Aligned_cols=262  Identities=21%  Similarity=0.229  Sum_probs=218.2

Q ss_pred             HHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCc
Q 018048           67 VSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KED  140 (361)
Q Consensus        67 ~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D  140 (361)
                      -+.|..+++|.  ..+.++.|+.+.+|+.|..+..||+++...|...|+||    .+|.|++..++-..++      -.+
T Consensus       157 ~~~Wl~~riE~--~~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KRFs----lEG~eslip~l~~~i~~~~~~G~~~  230 (906)
T COG0567         157 EKRWLQERIES--GKPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKRFS----LEGGESLIPMLDELIDRAGKQGVKE  230 (906)
T ss_pred             HHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcccc----ccchhhHHHHHHHHHHHHHhcCcce
Confidence            46788888888  67888999999999999999999999999999999985    8999999877766654      368


Q ss_pred             EEEc-ccCCcchhhc--CCCCHHHHHHHHhcCcC-CCcccCCCcccccc-cc----c-----cccCCccccccccHHHHH
Q 018048          141 SVVS-TYRDHVHALS--KGVPARAVMSELFGKAT-GCCRGQGGSMHMFS-KE----H-----NLLGGFAFIGEGIPVATG  206 (361)
Q Consensus       141 ~v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~-g~~~gd~G~~h~~~-~~----~-----~~~~~~g~mG~~lP~AiG  206 (361)
                      +|++ .||++.+.|.  .|.+++.+|.|+.+... ...+||.-. |+.. ..    .     .+..+.++|..-.|+..|
T Consensus       231 vviGMaHRGRLNvL~nvlgKp~~~if~eF~g~~~~~~~sGDVKY-H~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G  309 (906)
T COG0567         231 VVIGMAHRGRLNVLVNVLGKPYRDIFDEFEGKSAEPDLSGDVKY-HLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEG  309 (906)
T ss_pred             EEecccccchHHHHHHHhCCCHHHHHHHhCCCCCCCCccccccc-ccccccccccCCCeeEEEecCCcchhhhhchhhhc
Confidence            8888 6999999987  58999999999998664 223566543 3332 11    1     123667999999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCcchhhc
Q 018048          207 AAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDPQIYKK  282 (361)
Q Consensus       207 aA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~d~~~~  282 (361)
                      .+.|.+......+  .+....|.++||.+|. +|.+.|.||+...-+.-   .++||.||+.++++.....++.+...++
T Consensus       310 ~vRa~Qd~~~d~~--~~k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTsp~~sRSt~Y~TDv  387 (906)
T COG0567         310 SVRAKQDRLGDTE--RDKVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTSPADARSTPYCTDV  387 (906)
T ss_pred             chHhhhhhhccCc--cceeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCCcccccCCCCCCCh
Confidence            9999877643211  1235567999999999 99999999999875543   9999999999998876666777888888


Q ss_pred             cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CC
Q 018048          283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PD  337 (361)
Q Consensus       283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~  337 (361)
                      |+.+++|.++|++.||+++..+.+.|+++...++++++|++.|||..||++.| |+
T Consensus       388 AKm~~aPifHVN~DDPEAv~~a~~~A~e~R~~F~kDvvIDlvcYRr~GHNE~DePs  443 (906)
T COG0567         388 AKMIEAPIFHVNADDPEAVLFAPALALEYRNGFKKDVVIDLVCYRRHGHNEGDEPS  443 (906)
T ss_pred             hhccCCceeecccCCchhhhhhHHHHHHHHhhcCCCeeeecccCCCCCCCcccccc
Confidence            99999999999999999999999999999999999999999999999999998 44

>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC)

Probab=99.89  E-value=2.7e-23  Score=185.78  Aligned_cols=148  Identities=24%  Similarity=0.310  Sum_probs=113.6

Q ss_pred             CHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048          158 PARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (361)
Q Consensus       158 ~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~  226 (361)
                      +|..++.++....++  ++..|.|....|.       .+.++  .++ |+||+++|+|+|+++|           .++++
T Consensus         2 ~~~~~~~~l~~~l~~~~~iv~d~g~~~~~~~~~~~~~~~~~~~~~~~-g~mG~~lp~aiGaala-----------~~~~~   69 (178)
T cd02002           2 TPEYLAAALAAALPEDAIIVDEAVTNGLPLRDQLPLTRPGSYFTLRG-GGLGWGLPAAVGAALA-----------NPDRK   69 (178)
T ss_pred             CHHHHHHHHHhhCCCCeEEEecCCcccHHHHHhcccCCCCCeeccCC-ccccchHHHHHHHHhc-----------CCCCe
Confidence            567788888777764  4566666654432       13333  345 9999999999999999           67899


Q ss_pred             EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc-----------------ccCCcchhhccccCCc
Q 018048          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-----------------ATSDPQIYKKGPAFGM  288 (361)
Q Consensus       227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~-----------------q~~~~d~~~~A~a~Gi  288 (361)
                      |||++|||+|+|+  .++|.||+++++|+++||.||+ |++....+.                 ....+|+.++|++||+
T Consensus        70 vv~i~GDG~f~~~--~~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~  147 (178)
T cd02002          70 VVAIIGDGSFMYT--IQALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAIAKAFGV  147 (178)
T ss_pred             EEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHcCC
Confidence            9999999999999  7999999999999999999997 665321110                 0134799999999999


Q ss_pred             cEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          289 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       289 ~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      ++++|++.  .+    +++|++++++.++|+|||+.+
T Consensus       148 ~~~~v~~~--~e----l~~al~~a~~~~~p~vi~v~v  178 (178)
T cd02002         148 EAERVETP--EE----LDEALREALAEGGPALIEVVV  178 (178)
T ss_pred             ceEEeCCH--HH----HHHHHHHHHhCCCCEEEEEEC
Confidence            99999874  35    455666666678999999964

P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.

>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions

Probab=99.89  E-value=5e-23  Score=184.74  Aligned_cols=153  Identities=24%  Similarity=0.335  Sum_probs=117.4

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      ++|..++.++....+.  +...|.|....+.       .+..+  .+++|+||+++|+|+|+++|           .+++
T Consensus         2 ~~~~~~~~~l~~~~~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~~~aiGa~~a-----------~~~~   70 (178)
T cd02014           2 IHPERVAAELNKRAPDDAIFTIDVGNVTVWAARHLRMNGKQRFILSGLLATMGNGLPGAIAAKLA-----------YPDR   70 (178)
T ss_pred             CCHHHHHHHHHhHCCCCeEEEEcCcHHHHHHHHhcccCCCCcEEcCCCCchhhhHHHHHHHHHHh-----------CCCC
Confidence            4577788888876664  4556666543331       12333  46789999999999999999           6889


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc---------cccCCcchhhccccCCccEEEEeC
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVDG  295 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~---------~q~~~~d~~~~A~a~Gi~~~~Vdg  295 (361)
                      +||+++|||+|+++  .+||.+++++++|+++||.||+ |++....+         .....+|+.++|++||+++++|+.
T Consensus        71 ~vv~i~GDG~f~~~--~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~  148 (178)
T cd02014          71 QVIALSGDGGFAML--MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKGIRVED  148 (178)
T ss_pred             cEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeEEEeCC
Confidence            99999999999999  8999999999999999999997 55421100         011357999999999999999986


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          296 MDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       296 ~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      .+  +    ++++++++++.++|+||||.+.+.
T Consensus       149 ~~--e----l~~~l~~a~~~~~p~liev~~~~~  175 (178)
T cd02014         149 PD--E----LEAALDEALAADGPVVIDVVTDPN  175 (178)
T ss_pred             HH--H----HHHHHHHHHhCCCCEEEEEEeCCC
Confidence            54  4    566777777788999999998653

POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.

>PRK06163 hypothetical protein; Provisional

Probab=99.88  E-value=2.9e-22  Score=183.68  Aligned_cols=169  Identities=16%  Similarity=0.238  Sum_probs=124.9

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCc--cccccc---cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEE
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGS--MHMFSK---EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA  229 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~--~h~~~~---~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~  229 (361)
                      ++-.+++.++....++  .+..|.|+  ..+|..   +.++. .+|+||+++|+|+|+++|           .|+++|||
T Consensus        13 ~~~~~~i~~l~~~l~~~~~iv~D~G~~~~~~~~~~~~~~~~~-~~GsMG~glpaAiGaalA-----------~p~r~Vv~   80 (202)
T PRK06163         13 MNRFDLTCRLVAKLKDEEAVIGGIGNTNFDLWAAGQRPQNFY-MLGSMGLAFPIALGVALA-----------QPKRRVIA   80 (202)
T ss_pred             cCHHHHHHHHHHhcCCCCEEEECCCccHHHHHHhhcCCCCeE-eecccccHHHHHHHHHHh-----------CCCCeEEE
Confidence            4567788888887763  56677886  334432   33444 479999999999999999           78999999


Q ss_pred             EECCCcccCcchHHHHHHhhhC-CCCeEEEEEcCC-cccccccc-cccCCcchhhccccCCcc-EEEEeCCCHHHHHHHH
Q 018048          230 FFGDGTCNNGQFFECLNMAALW-KLPIVFVVENNL-WAIGMSHL-RATSDPQIYKKGPAFGMP-GFHVDGMDVLKVREVA  305 (361)
Q Consensus       230 ~~GDGs~~~g~~~eeL~tA~~~-~LPvi~VV~NN~-y~is~~~~-~q~~~~d~~~~A~a~Gi~-~~~Vdg~D~~~v~~al  305 (361)
                      ++|||+|+|+  .+||.|++++ ++|+++||.||+ |++..... .....+||.++|++||++ +++|+..+  ++    
T Consensus        81 i~GDG~f~m~--~~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~~~~~~~~~~Df~~lA~a~G~~~~~~v~~~~--el----  152 (202)
T PRK06163         81 LEGDGSLLMQ--LGALGTIAALAPKNLTIIVMDNGVYQITGGQPTLTSQTVDVVAIARGAGLENSHWAADEA--HF----  152 (202)
T ss_pred             EEcchHHHHH--HHHHHHHHHhcCCCeEEEEEcCCchhhcCCccCCCCCCCCHHHHHHHCCCceEEEeCCHH--HH----
Confidence            9999999998  8999999987 689999999997 55321111 112357999999999998 67887544  54    


Q ss_pred             HHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CCCCCCHHHHHhHHH
Q 018048          306 KEAIERARRGEGPTLVECETYRFRGHSLAD-PDELRDPGEHLVLVL  350 (361)
Q Consensus       306 ~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~~yR~~~e~~~~~~  350 (361)
                      +.+++++++.++|+||||.+.+..     + |...|++.|...-.-
T Consensus       153 ~~al~~a~~~~~p~lIeV~i~~~~-----~~~~~~~~~~~~~~~~~  193 (202)
T PRK06163        153 EALVDQALSGPGPSFIAVRIDDKP-----GVGTTERDPAQIRERFM  193 (202)
T ss_pred             HHHHHHHHhCCCCEEEEEEecCCC-----CCCCCCCCHHHHHHHHH
Confidence            555666666789999999986532     2 344588888755443

>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates

Probab=99.88  E-value=2.6e-22  Score=190.09  Aligned_cols=136  Identities=26%  Similarity=0.370  Sum_probs=117.6

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG  267 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is  267 (361)
                      ++...+|+||+++|+|+|+|+|.++.       .++++|+|++|||++++|.++|+|++|++++|| +++|+.||+|++.
T Consensus        99 g~~~~~GslG~gl~~avG~Ala~~~~-------~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~  171 (255)
T cd02012          99 GVEVTTGSLGQGLSVAVGMALAEKLL-------GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQID  171 (255)
T ss_pred             CeeeCCcchhhHHHHHHHHHHHHHHh-------CCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence            44456799999999999999998876       578999999999999999999999999999998 8888888888887


Q ss_pred             cccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCCCCCCCC
Q 018048          268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD  335 (361)
Q Consensus       268 ~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~gHs~~D  335 (361)
                      .........+++.+++++||++++.|+|+|+.++.+++++|.    +. ++|++|++.|.+..|++...
T Consensus       172 ~~~~~~~~~~~~~~~~~a~G~~~~~v~G~d~~~l~~al~~a~----~~~~~P~~I~~~t~kg~g~~~~e  236 (255)
T cd02012         172 GPTDDILFTEDLAKKFEAFGWNVIEVDGHDVEEILAALEEAK----KSKGKPTLIIAKTIKGKGVPFME  236 (255)
T ss_pred             CcHhhccCchhHHHHHHHcCCeEEEECCCCHHHHHHHHHHHH----HcCCCCEEEEEEeecccccCccC
Confidence            655555567899999999999999999999988877666654    33 78999999999999998543

In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.

>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase)

Probab=99.88  E-value=1.5e-22  Score=178.63  Aligned_cols=144  Identities=16%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             HHHHHhcCcCC-CcccCCCcccccc-----ccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCc
Q 018048          162 VMSELFGKATG-CCRGQGGSMHMFS-----KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT  235 (361)
Q Consensus       162 ~~~el~~~~~g-~~~gd~G~~h~~~-----~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs  235 (361)
                      ++.++....++ .+.++.|++..+.     .+.++.. +|+||+++|+|+|+++|           .+ ++|||++|||+
T Consensus         4 ~~~~l~~~l~d~~vv~d~G~~~~~~~~~~~~~~~~~~-~gsmG~~lp~AiGa~~a-----------~~-~~Vv~i~GDG~   70 (157)
T cd02001           4 AIAEIIEASGDTPIVSTTGYASRELYDVQDRDGHFYM-LGSMGLAGSIGLGLALG-----------LS-RKVIVVDGDGS   70 (157)
T ss_pred             HHHHHHHhCCCCEEEeCCCHhHHHHHHhhcCCCCEEe-ecchhhHHHHHHHHHhc-----------CC-CcEEEEECchH
Confidence            44444444422 3445555433321     2334433 89999999999999998           44 88999999999


Q ss_pred             ccCcchHHHHHHhhhC-CCCeEEEEEcCCcccccccccc--cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHH
Q 018048          236 CNNGQFFECLNMAALW-KLPIVFVVENNLWAIGMSHLRA--TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA  312 (361)
Q Consensus       236 ~~~g~~~eeL~tA~~~-~LPvi~VV~NN~y~is~~~~~q--~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~a  312 (361)
                      |+|+  .++|.|++++ ++|+++||.||+ +++......  ...+||.++|++||+++++|+..  .++    +++++++
T Consensus        71 f~m~--~~el~t~~~~~~~~i~~vV~nN~-~~g~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~--~el----~~al~~a  141 (157)
T cd02001          71 LLMN--PGVLLTAGEFTPLNLILVVLDNR-AYGSTGGQPTPSSNVNLEAWAAACGYLVLSAPLL--GGL----GSEFAGL  141 (157)
T ss_pred             HHhc--ccHHHHHHHhcCCCEEEEEEeCc-cccccCCcCCCCCCCCHHHHHHHCCCceEEcCCH--HHH----HHHHHHH
Confidence            9998  8999999999 599999999887 333322111  13589999999999999999754  455    5555555


Q ss_pred             HcCCCCEEEEEEEec
Q 018048          313 RRGEGPTLVECETYR  327 (361)
Q Consensus       313 r~~~gP~lIev~t~R  327 (361)
                      ++.++|++|||.+.+
T Consensus       142 ~~~~gp~vi~v~i~~  156 (157)
T cd02001         142 LATTGPTLLHAPIAP  156 (157)
T ss_pred             HhCCCCEEEEEEecC
Confidence            667899999998854

Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.

>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC)

Probab=99.87  E-value=3.5e-22  Score=180.34  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=112.4

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~  226 (361)
                      +++..+++++....++  +...|.|+.....      .+.++  .+.+|+||+++|+|+|+++|           .++++
T Consensus         2 l~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGaala-----------~~~~~   70 (183)
T cd02005           2 LTQARLWQQVQNFLKPNDILVAETGTSWFGALDLKLPKGTRFISQPLWGSIGYSVPAALGAALA-----------APDRR   70 (183)
T ss_pred             CCHHHHHHHHHHhcCCCCEEEECCchHHHhhhhccCCCCCEEEeccchhhHhhhHHHHHHHHHh-----------CCCCe
Confidence            4567777777776543  4555655532211      12233  36789999999999999999           68899


Q ss_pred             EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc--------ccCCcchhhccccCC----ccEEEEe
Q 018048          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------ATSDPQIYKKGPAFG----MPGFHVD  294 (361)
Q Consensus       227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~--------q~~~~d~~~~A~a~G----i~~~~Vd  294 (361)
                      |++++|||+|+|+  .+||.|++++++|+++||.||+ +++..+..        ....+|+.++|++||    +++.+|+
T Consensus        71 vv~i~GDG~f~~~--~~el~ta~~~~~p~~ivV~nN~-~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~~~~v~  147 (183)
T cd02005          71 VILLVGDGSFQMT--VQELSTMIRYGLNPIIFLINND-GYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGLSFRVK  147 (183)
T ss_pred             EEEEECCchhhcc--HHHHHHHHHhCCCCEEEEEECC-CcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCccccEEEec
Confidence            9999999999998  8899999999999888888887 33332211        113579999999999    7999997


Q ss_pred             CCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecC
Q 018048          295 GMDVLKVREVAKEAIERARR-GEGPTLVECETYRF  328 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~  328 (361)
                      ..  .++    ++|++++++ .++|+|||+.+++.
T Consensus       148 ~~--~el----~~al~~a~~~~~~p~liev~~~~~  176 (183)
T cd02005         148 TE--GEL----DEALKDALFNRDKLSLIEVILPKD  176 (183)
T ss_pred             CH--HHH----HHHHHHHHhcCCCcEEEEEEcCcc
Confidence            54  454    555666665 68999999999653

PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.

>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD)

Probab=99.87  E-value=1.3e-22  Score=181.78  Aligned_cols=144  Identities=22%  Similarity=0.183  Sum_probs=107.9

Q ss_pred             HHHHHHhcCcCC--CcccCCCcccccc--------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048          161 AVMSELFGKATG--CCRGQGGSMHMFS--------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL  228 (361)
Q Consensus       161 ~~~~el~~~~~g--~~~gd~G~~h~~~--------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv  228 (361)
                      .++.++....+.  ++..|.|+...|.        .+.++  ..+.+.||+++|+|+|+++|           . +++||
T Consensus         5 ~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~aiGa~la-----------~-~~~Vv   72 (175)
T cd02009           5 ALARALPDHLPEGSQLFVGNSMPIRDLDLFALPSDKTVRVFANRGASGIDGTLSTALGIALA-----------T-DKPTV   72 (175)
T ss_pred             HHHHHHHHhCCCCCeEEEECCHHHHHHHHccCccCCCceEEecCCccchhhHHHHHHHHHhc-----------C-CCCEE
Confidence            355556655552  4555666554431        12333  35678999999999999999           5 78999


Q ss_pred             EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------c---CCcchhhccccCCccEEEEe
Q 018048          229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------T---SDPQIYKKGPAFGMPGFHVD  294 (361)
Q Consensus       229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~---~~~d~~~~A~a~Gi~~~~Vd  294 (361)
                      |++|||+|+|+  .+||.||+++++|+++||.||+ ++++....+           .   ..+||.++|++||+++++|+
T Consensus        73 ~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~-~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~  149 (175)
T cd02009          73 LLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNN-GGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYRRVS  149 (175)
T ss_pred             EEEehHHHHHh--HHHHHhccccCCCeEEEEEECC-CCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCeeeCC
Confidence            99999999999  8999999999999999999998 333322111           0   25799999999999999997


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      ..+  +    ++.+++++++.++|+||||.+
T Consensus       150 ~~~--e----l~~al~~a~~~~~p~lIev~v  174 (175)
T cd02009         150 SLD--E----LEQALESALAQDGPHVIEVKT  174 (175)
T ss_pred             CHH--H----HHHHHHHHHhCCCCEEEEEeC
Confidence            543  4    456666666788999999976

SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=99.87  E-value=1.6e-22  Score=212.19  Aligned_cols=157  Identities=20%  Similarity=0.197  Sum_probs=122.5

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.++...++.  ++..|.|.+..|.       .+.++  ++++|+||+++|+|+|+++|           .|+
T Consensus       368 ~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~pd  436 (588)
T TIGR01504       368 PVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTIPAALGVCAA-----------DPK  436 (588)
T ss_pred             CcCHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhccccCCCcEEeCCccccccchHhHHHhhhhh-----------CCC
Confidence            47899999998887663  5667778765542       23444  46689999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc----------------------CCcchhhc
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYKK  282 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~----------------------~~~d~~~~  282 (361)
                      ++||+++|||+|+|+  .+||.||++|++|+++||.||+ ++++.++.|.                      ..+||+++
T Consensus       437 r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l  513 (588)
T TIGR01504       437 RNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNA-YLGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVKV  513 (588)
T ss_pred             CcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHhcccccceeeccccccccccCCCCCHHHH
Confidence            999999999999999  9999999999999999999998 4444332111                      14799999


Q ss_pred             cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      |++||+++.+|+..+  ++.+++++|++..++.++|+||||.+.+.
T Consensus       514 A~a~G~~~~~V~~~~--eL~~al~~a~~~~~~~~~p~lIeV~i~~~  557 (588)
T TIGR01504       514 AEGLGCKAIRVFKPE--EIAPAFEQAKALMAEHRVPVVVEVILERV  557 (588)
T ss_pred             HHHCCCEEEEECCHH--HHHHHHHHHHhhcccCCCcEEEEEEeccc
Confidence            999999999998655  55544444443322468999999999654

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit

Probab=99.87  E-value=7.3e-22  Score=177.30  Aligned_cols=156  Identities=22%  Similarity=0.204  Sum_probs=118.9

Q ss_pred             hcCCCCHHHHHHHHhcCcCC--CcccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEE
Q 018048          153 LSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA  229 (361)
Q Consensus       153 l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~  229 (361)
                      ...|.+..-++.++...+++  ++..|.|.+.+|.. +..+...+++||+++|+|+|+++|           .++++||+
T Consensus         6 ~c~gc~~~~~~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~g~mG~gl~~AiGa~la-----------~p~~~Vv~   74 (178)
T cd02008           6 LCPGCPHRPSFYALRKAFKKDSIVSGDIGCYTLGALPPLNAIDTCTCMGASIGVAIGMAKA-----------SEDKKVVA   74 (178)
T ss_pred             cCCCCCChHHHHHHHHHhcCCeEEecCcCcccccccCChhhccccccCccHHHHHhhHHhh-----------CCCCCEEE
Confidence            34567777788888777663  56778887766653 233445789999999999999999           68899999


Q ss_pred             EECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc-----------CCcchhhccccCCccEEEEeC-CC
Q 018048          230 FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-----------SDPQIYKKGPAFGMPGFHVDG-MD  297 (361)
Q Consensus       230 ~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~-----------~~~d~~~~A~a~Gi~~~~Vdg-~D  297 (361)
                      ++|||+|+|.. ++||.||+++++|+++||.||+ ++++....+.           ..+|+.++|++||+++++|.. .|
T Consensus        75 i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~-~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~  152 (178)
T cd02008          75 VIGDSTFFHSG-ILGLINAVYNKANITVVILDNR-TTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKRVVVVDPYD  152 (178)
T ss_pred             EecChHHhhcc-HHHHHHHHHcCCCEEEEEECCc-ceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCEEEecCccC
Confidence            99999998642 6999999999999999999887 4433322111           247999999999999999954 44


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          298 VLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      +.++    .+|++++++.++|+||++..
T Consensus       153 l~~~----~~al~~a~~~~gp~lI~v~~  176 (178)
T cd02008         153 LKAI----REELKEALAVPGVSVIIAKR  176 (178)
T ss_pred             HHHH----HHHHHHHHhCCCCEEEEEeC
Confidence            4433    35566666778999999964

IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.

>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE)

Probab=99.87  E-value=2.5e-21  Score=174.29  Aligned_cols=134  Identities=18%  Similarity=0.198  Sum_probs=103.5

Q ss_pred             CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCC-CeEEEEEcCC-ccccccc
Q 018048          193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNL-WAIGMSH  270 (361)
Q Consensus       193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~L-Pvi~VV~NN~-y~is~~~  270 (361)
                      .+|+||+++|+|+|+++|           .+ ++|||++|||+|+|+  .++|.|++++++ |+++||.||+ |++....
T Consensus        40 ~~g~mG~~lp~AiGaala-----------~~-~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~~  105 (179)
T cd03372          40 MLGSMGLASSIGLGLALA-----------QP-RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGNQ  105 (179)
T ss_pred             cccchhhHHHHHHHHHhc-----------CC-CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCCC
Confidence            389999999999999999           45 899999999999998  899999999995 6888887776 5543211


Q ss_pred             cccc-CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHH
Q 018048          271 LRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLV  349 (361)
Q Consensus       271 ~~q~-~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~  349 (361)
                      .... ..+|+.++|++||+++.+|++ ++.++    ++|+++++  ++|++|||.+.+..+   ..|-.++++.++..-+
T Consensus       106 ~~~~~~~~d~~~lA~a~G~~~~~v~~-~~~el----~~al~~a~--~gp~lIev~~~~~~~---~~~~~~~~~~~~~~~~  175 (179)
T cd03372         106 PTHAGKKTDLEAVAKACGLDNVATVA-SEEAF----EKAVEQAL--DGPSFIHVKIKPGNT---DVPNIPRDPVEIKNRF  175 (179)
T ss_pred             CCCCCCCCCHHHHHHHcCCCeEEecC-CHHHH----HHHHHHhc--CCCEEEEEEEcCCCC---CCCCCCCCHHHHHHHH
Confidence            1111 367999999999999999985 45554    55666665  789999999976544   3366777777765544


Q ss_pred             H
Q 018048          350 L  350 (361)
Q Consensus       350 ~  350 (361)
                      .
T Consensus       176 ~  176 (179)
T cd03372         176 M  176 (179)
T ss_pred             H
Confidence            4

M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.

>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]

Probab=99.87  E-value=1.4e-21  Score=195.77  Aligned_cols=272  Identities=20%  Similarity=0.274  Sum_probs=213.7

Q ss_pred             chhHHHHHHhh-hcccc---cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC--
Q 018048           64 VVAVSEVVKEK-KVKSI---SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK--  137 (361)
Q Consensus        64 ~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~--  137 (361)
                      ++-++||++.+ +.++.   ....+.++++.++-+.|+.+..||.+++..|++-|+.|    ++|.|.+..-....|+  
T Consensus       130 fs~v~~~eEr~W~a~nFE~l~~e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvKRYG----gEGAESM~aFF~eLl~~s  205 (913)
T KOG0451|consen  130 FSYVEDIEEREWLARNFETLDQEQLGKEERCEIAELMLKSQAFDNFLATKFPTVKRYG----GEGAESMLAFFWELLRDS  205 (913)
T ss_pred             hhhhccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHhccchhhhhc----cccHHHHHHHHHHHHHHH
Confidence            45667776544 33322   33567899999999999999999999999999999876    7788877544444443  


Q ss_pred             ----CCcEEEc-ccCCcchhhc--CCCCHHHHHHHHhcCcCC----CcccCCCccccccc--------cc--cccCCccc
Q 018048          138 ----KEDSVVS-TYRDHVHALS--KGVPARAVMSELFGKATG----CCRGQGGSMHMFSK--------EH--NLLGGFAF  196 (361)
Q Consensus       138 ----~~D~v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~g----~~~gd~G~~h~~~~--------~~--~~~~~~g~  196 (361)
                          ..++|++ .||++.+.+.  ...+|..+++.+.|...-    ...||.-+ |+-+.        +.  .+.++.++
T Consensus       206 a~~~ie~viigmpHRGRlnLlt~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlS-Hl~sS~dykg~~~~lhvtMlpNPSH  284 (913)
T KOG0451|consen  206 AQANIEHVIIGMPHRGRLNLLTALLNFPPAKMFRKLSGASEFPEDIEAMGDVLS-HLHSSEDYKGLGKKLHVTMLPNPSH  284 (913)
T ss_pred             HhcCcceEEEeccccCcchHHHHHhcCCHHHHHHHhcCcccCchhhhHHHHHHH-HhhhhhhhcccCCceEEEecCChhh
Confidence                4788887 5999988875  467999999999988752    23345443 22211        11  23578899


Q ss_pred             cccccHHHHHHHHHHHHHHhhhh-------hcCCCceEEEEECCCccc-CcchHHHHHHhhh--CCCC-eEEEEEcCCcc
Q 018048          197 IGEGIPVATGAAFTSKYRREVLK-------EADCDHVTLAFFGDGTCN-NGQFFECLNMAAL--WKLP-IVFVVENNLWA  265 (361)
Q Consensus       197 mG~~lP~AiGaA~A~k~~~~~~~-------~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~--~~LP-vi~VV~NN~y~  265 (361)
                      +...-|+|+|-+.+.+..+..++       +.+..-..|.++|||+|. +|.++|+++++-.  ..+. .+++|.||+.+
T Consensus       285 LEAvNPVAmGKtR~rqqsr~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvg  364 (913)
T KOG0451|consen  285 LEAVNPVAMGKTRSRQQSRGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVG  364 (913)
T ss_pred             hhccCchhhcchhHHHHhhcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEeccccc
Confidence            99999999999999887765442       111122457789999999 9999999999864  3444 89999999999


Q ss_pred             cccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCC
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELR  340 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR  340 (361)
                      ++++....++.....++|+++++|+++|+|.|+++|..+.+-|+++-|+.++.++|++.|+|..||++.|+..|-
T Consensus       365 fTtp~~rGRSs~ycsDiaK~~~~pviHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRrwgHnelddp~ft  439 (913)
T KOG0451|consen  365 FTTPGDRGRSSAYCSDIAKSIQAPVIHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRRWGHNELDDPTFT  439 (913)
T ss_pred             ccCcccccccchhhhHHHHHhCCCEEEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHHhccccccCcccc
Confidence            999888777777888899999999999999999999999999999999999999999999999999999865554

>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit

Probab=99.87  E-value=1.2e-21  Score=176.77  Aligned_cols=132  Identities=18%  Similarity=0.242  Sum_probs=100.5

Q ss_pred             ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCC-CCeEEEEEcCCccccccccc
Q 018048          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWK-LPIVFVVENNLWAIGMSHLR  272 (361)
Q Consensus       194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~-LPvi~VV~NN~y~is~~~~~  272 (361)
                      +|+||+++|+|+|+++|           . +++|||++|||+|+|+  .++|.|+++++ +|+++||.||+ ++++....
T Consensus        41 ~gsmG~~lpaAiGa~la-----------~-~~~Vv~i~GDG~f~m~--~~el~ta~~~~~~pv~~vV~NN~-~yg~~~~q  105 (181)
T TIGR03846        41 LGSMGLASSIGLGLALA-----------T-DRTVIVIDGDGSLLMN--LGVLPTIAAESPKNLILVILDNG-AYGSTGNQ  105 (181)
T ss_pred             ccccccHHHHHHHHHHc-----------C-CCcEEEEEcchHHHhh--hhHHHHHHHhCCCCeEEEEEeCC-ccccccCc
Confidence            79999999999999999           6 8899999999999998  89999999999 59999999998 43333211


Q ss_pred             c--c-CCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHH-HHh
Q 018048          273 A--T-SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGE-HLV  347 (361)
Q Consensus       273 q--~-~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e-~~~  347 (361)
                      +  . ..+||+++|++||+++.+ |+..+  +    +++|++ +++.++|+||||.+.+...  .. |...+++.| +++
T Consensus       106 ~~~~~~~~d~~~lA~a~G~~~~~~v~~~~--~----l~~al~-a~~~~~p~li~v~~~~~~~--~~-p~~~~~~~~~~~~  175 (181)
T TIGR03846       106 PTPASRRTDLELVAKAAGIRNVEKVADEE--E----LRDALK-ALAMKGPTFIHVKVKPGNA--KV-PNIPLSPEEIKER  175 (181)
T ss_pred             CCCCCCCCCHHHHHHHCCCCeEEEeCCHH--H----HHHHHH-HHcCCCCEEEEEEeCCCCC--CC-CCCCCCHHHHHHH
Confidence            1  1 367999999999999998 76543  4    455665 6677899999999965431  11 344454444 444


Q ss_pred             HHH
Q 018048          348 LVL  350 (361)
Q Consensus       348 ~~~  350 (361)
                      |+.
T Consensus       176 ~~~  178 (181)
T TIGR03846       176 FME  178 (181)
T ss_pred             HHH
Confidence            443

Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>PRK12474 hypothetical protein; Provisional

Probab=99.86  E-value=5.7e-22  Score=205.10  Aligned_cols=150  Identities=18%  Similarity=0.203  Sum_probs=118.2

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.++....++  +++.|+|++..|.       .+.++ .+..|+||+++|+|+|+++|           .|++
T Consensus       340 ~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA-----------~p~r  408 (518)
T PRK12474        340 ALNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVA-----------APDR  408 (518)
T ss_pred             CcCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHH-----------CCCC
Confidence            37788899988887664  4667777765542       23333 34459999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------------cCCcchhhccccC
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------------TSDPQIYKKGPAF  286 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------------~~~~d~~~~A~a~  286 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.++.|                   .+.+||+++|++|
T Consensus       409 ~vv~i~GDG~f~m~--~qEL~Ta~r~~lpv~iiV~NN~-~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~  485 (518)
T PRK12474        409 KVVCPQGDGGAAYT--MQALWTMARENLDVTVVIFANR-SYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGL  485 (518)
T ss_pred             cEEEEEcCchhcch--HHHHHHHHHHCCCcEEEEEcCC-cchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHC
Confidence            99999999999999  8999999999999999999998 444332110                   0135899999999


Q ss_pred             CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       287 Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      |+++.+|+..+  +    +..|++++++.++|+||||.+
T Consensus       486 G~~~~rv~~~~--e----L~~al~~a~~~~~p~liev~~  518 (518)
T PRK12474        486 GVEASRATTAE--E----FSAQYAAAMAQRGPRLIEAMI  518 (518)
T ss_pred             CCeEEEeCCHH--H----HHHHHHHHHcCCCCEEEEEEC
Confidence            99999998765  4    556666677788999999964

>PRK06154 hypothetical protein; Provisional

Probab=99.86  E-value=7.3e-22  Score=206.40  Aligned_cols=156  Identities=19%  Similarity=0.191  Sum_probs=121.3

Q ss_pred             CCCHHHHHHHHhcCcC--C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          156 GVPARAVMSELFGKAT--G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       156 g~~~~~~~~el~~~~~--g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      .++|..++.++....+  + ++..|.|.++.|.       .++++  .+.+|+||+++|+|+|+++|           .|
T Consensus       380 ~l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la-----------~p  448 (565)
T PRK06154        380 PINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGLGLAMGAKLA-----------RP  448 (565)
T ss_pred             CcCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHHHHHHHHHHh-----------CC
Confidence            4789999999998774  3 3556888765542       23444  35689999999999999999           78


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc----------cCCcchhhccccCCccEEEE
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA----------TSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q----------~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      +++|||++|||+|+|+  .+||.||++++||+++||.||+ +++.....|          ...+||+++|++||+++++|
T Consensus       449 ~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~yg~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~g~~V  525 (565)
T PRK06154        449 DALVINLWGDAAFGMT--GMDFETAVRERIPILTILLNNF-SMGGYDKVMPVSTTKYRATDISGDYAAIARALGGYGERV  525 (565)
T ss_pred             CCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECC-ccceeehhhhhhcCcccccCCCCCHHHHHHHCCCeEEEE
Confidence            9999999999999999  8999999999999999999998 444333211          12479999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +..+  ++..++++|++.. +.++|+||||.+.+.
T Consensus       526 ~~~~--el~~al~~a~~~~-~~~~p~lIev~v~~~  557 (565)
T PRK06154        526 EDPE--MLVPALLRALRKV-KEGTPALLEVITSEE  557 (565)
T ss_pred             CCHH--HHHHHHHHHHhhc-cCCCeEEEEEEeChH
Confidence            8654  6555555554332 257899999998554

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.86  E-value=5e-22  Score=208.79  Aligned_cols=153  Identities=19%  Similarity=0.374  Sum_probs=123.2

Q ss_pred             CCCHHHHHHHHhcCcC--C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          156 GVPARAVMSELFGKAT--G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       156 g~~~~~~~~el~~~~~--g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      ++++..++.++...++  + ++..|.|++..|.       ++.++  .+++|+||+++|+|+|+++|           .|
T Consensus       379 ~l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p  447 (595)
T PRK09107        379 VIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGGLGTMGYGLPAALGVQIA-----------HP  447 (595)
T ss_pred             CcCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCchhhhhhHHHHHHHHHh-----------CC
Confidence            4789999999988774  3 4567788754542       23444  45679999999999999999           78


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccE
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPG  290 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~  290 (361)
                      +++||+++|||+|+|+  .+||.||++|++|+++||.||+ ++++.+..|             ...+||+++|++||+++
T Consensus       448 ~r~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvi~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~  524 (595)
T PRK09107        448 DALVIDIAGDASIQMC--IQEMSTAVQYNLPVKIFILNNQ-YMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAVG  524 (595)
T ss_pred             CCeEEEEEcCchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHHhCCccccccCCCCCCHHHHHHHCCCeE
Confidence            9999999999999999  8999999999999999999998 554433211             12479999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       291 ~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      ++|+..+  +    +++|++++.+.++|+||||.+.+.
T Consensus       525 ~~v~~~~--e----l~~al~~a~~~~~p~lIeV~i~~~  556 (595)
T PRK09107        525 IRCEKPG--D----LDDAIQEMIDVDKPVIFDCRVANL  556 (595)
T ss_pred             EEECCHH--H----HHHHHHHHHhCCCCEEEEEEecCc
Confidence            9998765  4    566666666778999999999764

>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis

Probab=99.86  E-value=1.6e-21  Score=178.00  Aligned_cols=122  Identities=24%  Similarity=0.299  Sum_probs=105.5

Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL  271 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~  271 (361)
                      ..+|++|+++|+|+|+|+|.+++       +++++|+|++|||++++|.++|+|++|+.+++|+++||+||+|+++.+..
T Consensus        72 ~~~G~lG~gl~~A~G~Ala~k~~-------~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~  144 (195)
T cd02007          72 FGTGHSSTSISAALGMAVARDLK-------GKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG  144 (195)
T ss_pred             ECCCchhhhHHHHHHHHHHHHHh-------CCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC
Confidence            46799999999999999998877       46789999999999999999999999999999999999999998776543


Q ss_pred             cccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          272 RATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       272 ~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                            +..++++++|+.... ||++|++++.++++    ++++.++|++|+++|.+..|
T Consensus       145 ------~~~~~~~a~G~~~~~~vdG~d~~~l~~a~~----~a~~~~~P~~I~~~T~kg~g  194 (195)
T cd02007         145 ------TPGNLFEELGFRYIGPVDGHNIEALIKVLK----EVKDLKGPVLLHVVTKKGKG  194 (195)
T ss_pred             ------CHHHHHHhcCCCccceECCCCHHHHHHHHH----HHHhCCCCEEEEEEEecccC
Confidence                  466778889999885 99999988766554    45567899999999998765

Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.86  E-value=5.1e-22  Score=209.48  Aligned_cols=226  Identities=18%  Similarity=0.189  Sum_probs=155.6

Q ss_pred             cccccchhHHHHHHhhhcccccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC
Q 018048           59 RRRLPVVAVSEVVKEKKVKSISNLLIT-KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK  137 (361)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~  137 (361)
                      |...+..|..|+|.+++.+. ..+++. ..|+...++.++  +.++..        ..       ...+..|..-+..++
T Consensus       312 ~~~~~~~i~id~d~~~ig~~-~~~~~~i~~D~~~~l~~L~--~~l~~~--------~~-------~~~~~~~~~~~~~~~  373 (616)
T PRK07418        312 FASRAKVIHIDIDPAEVGKN-RRPDVPIVGDVRKVLVKLL--ERSLEP--------TT-------PPRTQAWLERINRWK  373 (616)
T ss_pred             cCCCCeEEEEeCCHHHhCCc-cCCCeEEecCHHHHHHHHH--Hhhhcc--------cc-------ccchHHHHHHHHHHH
Confidence            44456678888998888873 233444 455666666554  222210        00       011222433333343


Q ss_pred             CCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCC-CcccCCCcccccc------ccccc--cCCccccccccHHHHHHH
Q 018048          138 KEDSVVSTYRDHVHALSKGVPARAVMSELFGKATG-CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAA  208 (361)
Q Consensus       138 ~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g-~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA  208 (361)
                      ..........      ..+++|..++.++....++ +...|.|++.+|.      .+.++  ++++|+||+++|+|||++
T Consensus       374 ~~~~~~~~~~------~~~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~mG~glpaAiGA~  447 (616)
T PRK07418        374 QDYPLVVPPY------EGEIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTMGFGMPAAMGVK  447 (616)
T ss_pred             HhCcccccCC------CCCcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCccccccHHHHHHHHH
Confidence            2211111110      1357899999999887765 4566888765553      23334  467899999999999999


Q ss_pred             HHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc--------------
Q 018048          209 FTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT--------------  274 (361)
Q Consensus       209 ~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~--------------  274 (361)
                      +|           .|+++||+++|||+|+|+  .+||.||++|++||++||.||+ +++..+..|.              
T Consensus       448 lA-----------~p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~  513 (616)
T PRK07418        448 VA-----------LPDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNG-WQGMVRQWQESFYGERYSASNMEP  513 (616)
T ss_pred             Hh-----------CCCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCceeecCCC
Confidence            99           789999999999999998  9999999999999999999998 4444332111              


Q ss_pred             CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       275 ~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      ..+||+++|++||+++++|+..+  +    +++|++++++.++|+||||.+++.
T Consensus       514 ~~~d~~~~A~a~G~~g~~V~~~~--e----l~~al~~a~~~~~p~lIeV~i~~~  561 (616)
T PRK07418        514 GMPDFVKLAEAFGVKGMVISERD--Q----LKDAIAEALAHDGPVLIDVHVRRD  561 (616)
T ss_pred             CCCCHHHHHHHCCCeEEEeCCHH--H----HHHHHHHHHhCCCCEEEEEEecCc
Confidence            24799999999999999998665  4    566677777788999999999753

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.86  E-value=6.8e-22  Score=206.87  Aligned_cols=154  Identities=23%  Similarity=0.396  Sum_probs=122.8

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....++  +...|.|....|.       .++++  .+++|+||+++|+|+|+++|           .|+
T Consensus       371 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~  439 (572)
T PRK08979        371 RIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAAMGVKFA-----------MPD  439 (572)
T ss_pred             CcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcccccchhhHHHhhhhh-----------CCC
Confidence            47899999999987764  4567778755442       23444  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.++.|             ...+||+++|++||+++.
T Consensus       440 ~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~  516 (572)
T PRK08979        440 ETVVCVTGDGSIQMN--IQELSTALQYDIPVKIINLNNR-FLGMVKQWQDMIYQGRHSHSYMDSVPDFAKIAEAYGHVGI  516 (572)
T ss_pred             CeEEEEEcchHhhcc--HHHHHHHHHcCCCeEEEEEeCC-ccHHHHHHHHHHhCCcccccCCCCCCCHHHHHHHCCCeEE
Confidence            999999999999999  9999999999999999999998 444433211             124799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFR  329 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~  329 (361)
                      +|+..+  +    ++.|++++.+. ++|+||||.+.+..
T Consensus       517 ~v~~~~--e----L~~al~~a~~~~~~p~lIev~i~~~~  549 (572)
T PRK08979        517 RISDPD--E----LESGLEKALAMKDRLVFVDINVDETE  549 (572)
T ss_pred             EECCHH--H----HHHHHHHHHhcCCCcEEEEEEeCCcc
Confidence            998765  4    56666666653 89999999997643

>PRK07586 hypothetical protein; Validated

Probab=99.86  E-value=7e-22  Score=204.10  Aligned_cols=150  Identities=22%  Similarity=0.210  Sum_probs=117.8

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.+|...+++  ++..|+|++.+|.       .+.++ .+..|+||+++|+|+|+++|           .|++
T Consensus       336 ~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA-----------~p~r  404 (514)
T PRK07586        336 ALTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVA-----------CPDR  404 (514)
T ss_pred             CcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHh-----------CCCC
Confidence            36788888888887764  4667777765543       23333 33449999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------------cc--CCcchhhccccC
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------------AT--SDPQIYKKGPAF  286 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------------q~--~~~d~~~~A~a~  286 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..                 ..  ..+||.++|++|
T Consensus       405 ~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~  481 (514)
T PRK07586        405 KVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANR-AYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGM  481 (514)
T ss_pred             eEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCc-hhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHC
Confidence            99999999999998  9999999999999999999998 44433210                 01  246999999999


Q ss_pred             CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       287 Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      |+++++|+..+      ++++|++++++.++|+||||.+
T Consensus       482 G~~~~~V~~~~------el~~al~~a~~~~~p~liev~~  514 (514)
T PRK07586        482 GVPARRVTTAE------EFADALAAALAEPGPHLIEAVV  514 (514)
T ss_pred             CCcEEEeCCHH------HHHHHHHHHHcCCCCEEEEEEC
Confidence            99999998654      4566777777778999999964

>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins

Probab=99.86  E-value=4.2e-21  Score=174.19  Aligned_cols=117  Identities=19%  Similarity=0.206  Sum_probs=94.3

Q ss_pred             ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCC-CeEEEEEcCCcccccccc-
Q 018048          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNLWAIGMSHL-  271 (361)
Q Consensus       194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~L-Pvi~VV~NN~y~is~~~~-  271 (361)
                      +|+||+++|+|+|+++|           .|+++|||++|||+|+|.  .++|.|++++++ |+++||.||+ +++.... 
T Consensus        47 ~g~mG~~lpaAiGaala-----------~p~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~-~yg~~~~~  112 (188)
T cd03371          47 VGSMGHASQIALGIALA-----------RPDRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNG-AHDSVGGQ  112 (188)
T ss_pred             cCccccHHHHHHHHHHh-----------CCCCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCc-hhhccCCc
Confidence            39999999999999999           689999999999999988  899999999997 6999999998 3333221 


Q ss_pred             -cccCCcchhhccccCCccE-EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          272 -RATSDPQIYKKGPAFGMPG-FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       272 -~q~~~~d~~~~A~a~Gi~~-~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                       .....+||.++|++||+++ .+|+  ++.++    +++++++++.++|+|||+.+.+..+
T Consensus       113 ~~~~~~~d~~~~A~a~G~~~~~~v~--~~~el----~~al~~a~~~~~p~lIev~~~~~~~  167 (188)
T cd03371         113 PTVSFDVSLPAIAKACGYRAVYEVP--SLEEL----VAALAKALAADGPAFIEVKVRPGSR  167 (188)
T ss_pred             CCCCCCCCHHHHHHHcCCceEEecC--CHHHH----HHHHHHHHhCCCCEEEEEEecCCCC
Confidence             1123579999999999998 5887  44455    5555566667899999999977654

PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.

>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor

Probab=99.86  E-value=6.9e-22  Score=173.95  Aligned_cols=116  Identities=29%  Similarity=0.392  Sum_probs=96.7

Q ss_pred             cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc
Q 018048          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (361)
Q Consensus       191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~  270 (361)
                      ..+.++||+++|+|+|++++           .++++|++++|||+++++  +++|+||+++++|+++||.||++...+..
T Consensus        42 ~~~~g~~G~~~~~a~Gaa~a-----------~~~~~vv~~~GDG~~~~~--~~~l~ta~~~~~~~~~iv~nN~~~~~~~~  108 (168)
T cd00568          42 STGFGAMGYGLPAAIGAALA-----------APDRPVVCIAGDGGFMMT--GQELATAVRYGLPVIVVVFNNGGYGTIRM  108 (168)
T ss_pred             CCCchhhhhhHHHHHHHHHh-----------CCCCcEEEEEcCcHHhcc--HHHHHHHHHcCCCcEEEEEECCccHHHHH
Confidence            56789999999999999999           678999999999999996  89999999999999999999983222211


Q ss_pred             c-----------cccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          271 L-----------RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       271 ~-----------~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      .           .....+|+.+++++||+++.+|++.+      +++++++++++.++|++||++|
T Consensus       109 ~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~~------~l~~a~~~a~~~~~p~~i~v~~  168 (168)
T cd00568         109 HQEAFYGGRVSGTDLSNPDFAALAEAYGAKGVRVEDPE------DLEAALAEALAAGGPALIEVKT  168 (168)
T ss_pred             HHHHHcCCCcccccCCCCCHHHHHHHCCCeEEEECCHH------HHHHHHHHHHhCCCCEEEEEEC
Confidence            1           22346799999999999999998743      4566777777889999999975

These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.

>PRK05858 hypothetical protein; Provisional

Probab=99.86  E-value=1.3e-21  Score=203.57  Aligned_cols=153  Identities=22%  Similarity=0.213  Sum_probs=122.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.++...+++  +...|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus       357 ~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~  425 (542)
T PRK05858        357 PIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAARLA-----------RPS  425 (542)
T ss_pred             CcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHHHh-----------CCC
Confidence            47888999999887764  5667777754442       12333  35689999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------cCCcchhhccccCCccEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~~~~d~~~~A~a~Gi~~~~  292 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ +++..+..+            ...+||.++|++||+++.+
T Consensus       426 r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~  502 (542)
T PRK05858        426 RQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNG-IWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGHGEL  502 (542)
T ss_pred             CcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCC-chhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEE
Confidence            999999999999999  9999999999999999999998 444433211            1458999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      |+..+  +    +++|++++.+.++|+|||+.+.+.
T Consensus       503 v~~~~--e----L~~al~~a~~~~~p~lIev~~~~~  532 (542)
T PRK05858        503 VTVPA--E----LGPALERAFASGVPYLVNVLTDPS  532 (542)
T ss_pred             eCCHH--H----HHHHHHHHHhCCCcEEEEEEECCC
Confidence            98766  4    566666666788999999999654

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=99.86  E-value=1.2e-21  Score=203.56  Aligned_cols=154  Identities=21%  Similarity=0.275  Sum_probs=123.2

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....++  +...|.|+++.|.       .+..+  ..++++||+++|+|+|+++|           .++
T Consensus       358 ~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~~~  426 (539)
T TIGR02418       358 HLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARYFRSYRARHLLISNGMQTLGVALPWAIGAALV-----------RPN  426 (539)
T ss_pred             CcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHHHhcccCCCCceecCCCccccccHHHHHHHHHHh-----------CCC
Confidence            47788999999887764  4566778765552       23333  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++||+++|||+|+|+  .+||.|++++++|+++||.||+ ++++.+..|           ...+||.++|++||+++.+|
T Consensus       427 ~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V  503 (539)
T TIGR02418       427 TKVVSVSGDGGFLFS--SMELETAVRLKLNIVHIIWNDN-GYNMVEFQEEMKYQRSSGVDFGPIDFVKYAESFGAKGLRV  503 (539)
T ss_pred             CcEEEEEcchhhhch--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEE
Confidence            999999999999998  9999999999999999999997 444332111           13589999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +..+      +++++++++++.++|+||||.+.+..
T Consensus       504 ~~~~------eL~~al~~a~~~~~p~lIev~v~~~~  533 (539)
T TIGR02418       504 ESPD------QLEPTLRQAMEVEGPVVVDIPVDYSD  533 (539)
T ss_pred             CCHH------HHHHHHHHHHhCCCCEEEEEEecCcc
Confidence            8765      45666777777889999999997543

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.86  E-value=1.1e-21  Score=205.49  Aligned_cols=156  Identities=24%  Similarity=0.397  Sum_probs=121.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....++  ++..|.|++..|.       .+..+  .+++|+||+++|+|+|+++|           .|+
T Consensus       371 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~  439 (574)
T PRK07979        371 KIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMA-----------LPE  439 (574)
T ss_pred             CcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCccchhhHHHHHHHHHHh-----------CCC
Confidence            47899999999987754  4667777755442       23343  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||++++||+++||.||+ ++++.++.|             ...+||.++|++||++++
T Consensus       440 ~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~g~  516 (574)
T PRK07979        440 ETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNR-YLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGI  516 (574)
T ss_pred             CeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCc-hhhHHHHHHHHhcCCccccccCCCCCCHHHHHHHCCCEEE
Confidence            999999999999999  9999999999999999999998 444432111             134799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +|+..+  ++..++++|++.++ .++|+||||.+.+.
T Consensus       517 ~v~~~~--eL~~al~~a~~~~~-~~~p~lIeV~i~~~  550 (574)
T PRK07979        517 QISHPD--ELESKLSEALEQVR-NNRLVFVDVTVDGS  550 (574)
T ss_pred             EECCHH--HHHHHHHHHHhccC-CCCcEEEEEEECCc
Confidence            998655  55555554443221 37899999999763

>PRK05899 transketolase; Reviewed

Probab=99.85  E-value=4.9e-20  Score=194.78  Aligned_cols=158  Identities=23%  Similarity=0.294  Sum_probs=126.3

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhhc---CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA  265 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~---~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~  265 (361)
                      +...+|+||+++|+|+|+|+|.+++++..+..   ..+++|+|++|||++++|.++|+|++|++++|| +++|+.||+|+
T Consensus       113 ~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~  192 (624)
T PRK05899        113 VETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRIS  192 (624)
T ss_pred             eeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCc
Confidence            33568999999999999999988764322110   127899999999999999999999999999999 78888888898


Q ss_pred             cccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CCCCC----
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PDELR----  340 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~~yR----  340 (361)
                      ++.... ....+++.+++++||+++++|||+|+.++.+++++|    ++.++|++|++.|+|..||+..+ +..|.    
T Consensus       193 ~~~~~~-~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~a----~~~~~P~vI~v~t~kg~g~~~~e~~~~~H~~~~  267 (624)
T PRK05899        193 IDGPTE-GWFTEDVKKRFEAYGWHVIEVDGHDVEAIDAAIEEA----KASTKPTLIIAKTIIGKGAPNKEGTHKVHGAPL  267 (624)
T ss_pred             cccccc-ccccccHHHHhccCCCeEEEECCCCHHHHHHHHHHH----HhcCCCEEEEEEeEeccCCccccCCCcccCCCC
Confidence            876544 334678999999999999999999998877666554    44579999999999999998664 43554    


Q ss_pred             CHHHHHhHHHhh
Q 018048          341 DPGEHLVLVLFI  352 (361)
Q Consensus       341 ~~~e~~~~~~~~  352 (361)
                      +++|.+.+....
T Consensus       268 ~~~~~~~~~~~l  279 (624)
T PRK05899        268 GAEEIAAAKKEL  279 (624)
T ss_pred             CHHHHHHHHHHc
Confidence            367777776543

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.85  E-value=1.5e-21  Score=204.80  Aligned_cols=152  Identities=20%  Similarity=0.363  Sum_probs=120.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.++....++  +...|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus       387 ~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~  455 (587)
T PRK06965        387 IIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGTMGVGLPYAMGIKMA-----------HPD  455 (587)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence            47888999999887764  4566777654442       23444  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------c-CCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------T-SDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~-~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ +++..++.|            . ..+||+++|++||++++
T Consensus       456 r~Vv~i~GDGsf~m~--~~eL~Ta~r~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~  532 (587)
T PRK06965        456 DDVVCITGEGSIQMC--IQELSTCLQYDTPVKIISLNNR-YLGMVRQWQEIEYSKRYSHSYMDALPDFVKLAEAYGHVGM  532 (587)
T ss_pred             CcEEEEEcchhhhcC--HHHHHHHHHcCCCeEEEEEECC-cchHHHHHHHHhcCCCccccCCCCCCCHHHHHHHCCCEEE
Confidence            999999999999999  9999999999999999999998 444433211            1 25799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEec
Q 018048          292 HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYR  327 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R  327 (361)
                      +|+..+  ++    ++|++++++ .++|+||||.+.+
T Consensus       533 ~v~~~~--eL----~~al~~a~~~~~~p~lieV~i~~  563 (587)
T PRK06965        533 RIEKTS--DV----EPALREALRLKDRTVFLDFQTDP  563 (587)
T ss_pred             EECCHH--HH----HHHHHHHHhcCCCcEEEEEEecc
Confidence            998665  54    555555554 4789999999975

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.85  E-value=1.6e-21  Score=204.12  Aligned_cols=152  Identities=22%  Similarity=0.373  Sum_probs=122.1

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      ++++..++.++....++  ++..|+|++..|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       372 ~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~lA-----------~p~  440 (570)
T PRK06725        372 ELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAAIGAQLA-----------KEE  440 (570)
T ss_pred             CcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHHHhhHhh-----------cCC
Confidence            47889999999887763  5667778755442       23344  46779999999999999999           689


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~  292 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ +++..+..            ....+||.++|++||+++.+
T Consensus       441 ~~vv~i~GDG~f~~~--~~el~Ta~~~~lpi~~vV~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~  517 (570)
T PRK06725        441 ELVICIAGDASFQMN--IQELQTIAENNIPVKVFIINNK-FLGMVRQWQEMFYENRLSESKIGSPDFVKVAEAYGVKGLR  517 (570)
T ss_pred             CeEEEEEecchhhcc--HHHHHHHHHhCCCeEEEEEECC-ccHHHHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEE
Confidence            999999999999998  8999999999999999999998 44433211            11357999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      |+..+  +    +++|++++++.++|+||||.+.+
T Consensus       518 v~~~~--~----l~~al~~a~~~~~p~liev~id~  546 (570)
T PRK06725        518 ATNST--E----AKQVMLEAFAHEGPVVVDFCVEE  546 (570)
T ss_pred             eCCHH--H----HHHHHHHHHhCCCCEEEEEEeCC
Confidence            96543  4    56677777778999999999975

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=99.85  E-value=9.3e-22  Score=206.46  Aligned_cols=178  Identities=20%  Similarity=0.216  Sum_probs=132.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++.+++.++....++  ++..|.|.+..|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       385 ~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glp~aiGa~la-----------~p~  453 (588)
T PRK07525        385 YMHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRFEKGRKYLAPGSFGNCGYAFPAIIGAKIA-----------CPD  453 (588)
T ss_pred             CcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhcccCCCCeEEccccccccccHHHHHHHHHHh-----------CCC
Confidence            47899999999888774  4667777654432       23344  35789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------c-CCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------T-SDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~-~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|            . ..+||.++|++||++++
T Consensus       454 r~vv~i~GDG~f~~~--~~el~Ta~~~~lpv~ivV~NN~-~y~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~  530 (588)
T PRK07525        454 RPVVGFAGDGAWGIS--MNEVMTAVRHNWPVTAVVFRNY-QWGAEKKNQVDFYNNRFVGTELDNNVSYAGIAEAMGAEGV  530 (588)
T ss_pred             CcEEEEEcCchHhcc--HHHHHHHHHhCCCeEEEEEeCc-hhHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCeEE
Confidence            999999999999999  9999999999999999999997 433322111            1 24799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHHh
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLF  351 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~~  351 (361)
                      +|+..+  ++..+++++++.. +.++|+||||.+.+..|-+.. ...+|++.++-.|.++
T Consensus       531 ~v~~~~--el~~al~~a~~~~-~~~~p~lIev~~~~~~~~~~~-~~~~~~~~~~~~~~~~  586 (588)
T PRK07525        531 VVDTQE--ELGPALKRAIDAQ-NEGKTTVIEIMCNQELGEPFR-RDALKKPVRVLGKYKD  586 (588)
T ss_pred             EECCHH--HHHHHHHHHHhcC-CCCCcEEEEEEeccccCCchH-hhhhcccccccccccc
Confidence            997554  6655555555432 235899999999877642222 2457777776555443

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.85  E-value=2e-21  Score=203.40  Aligned_cols=153  Identities=23%  Similarity=0.356  Sum_probs=121.4

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.+|....++  ++..|.|++..|.       .+..+  .+++|+||+++|+|+|+++|           .++
T Consensus       373 ~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaAiGa~la-----------~p~  441 (574)
T PRK06466        373 IIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGGLGTMGFGLPAAMGVKLA-----------FPD  441 (574)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCCcchhhchHHHHHHHHHh-----------CCC
Confidence            47889999999887764  4566777754442       23344  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|             ...+||.++|++||+++.
T Consensus       442 r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpv~ivV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~  518 (574)
T PRK06466        442 QDVACVTGEGSIQMN--IQELSTCLQYGLPVKIINLNNG-ALGMVRQWQDMQYEGRHSHSYMESLPDFVKLAEAYGHVGI  518 (574)
T ss_pred             CeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHhcCCceeecCCCCCCCHHHHHHHCCCeEE
Confidence            999999999999999  9999999999999999999998 444333211             124799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~  328 (361)
                      +|+..+  +    +++|++++.+. ++|+||||.+.+.
T Consensus       519 ~v~~~~--e----l~~al~~a~~~~~~p~lIev~i~~~  550 (574)
T PRK06466        519 RITDLK--D----LKPKLEEAFAMKDRLVFIDIYVDRS  550 (574)
T ss_pred             EECCHH--H----HHHHHHHHHhcCCCcEEEEEEeCCc
Confidence            998765  4    45566666654 8999999999763

>PRK11269 glyoxylate carboligase; Provisional

Probab=99.85  E-value=1.6e-21  Score=204.83  Aligned_cols=158  Identities=21%  Similarity=0.206  Sum_probs=121.2

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.+|....++  ++..|.|...+|.       .+..+  .+++|+||+++|+|+|+++|           .++
T Consensus       369 ~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaAiGa~la-----------~p~  437 (591)
T PRK11269        369 PIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPLGWTIPAALGVRAA-----------DPD  437 (591)
T ss_pred             CcCHHHHHHHHHHhcCCCcEEEECCcHHHHHHHHhcccCCCCcEEeCCccccccchhhhHHhhhhh-----------CCC
Confidence            47888999998887764  4566777655442       22333  36789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc----------c------------CCcchhhc
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA----------T------------SDPQIYKK  282 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q----------~------------~~~d~~~~  282 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|          .            .++||.++
T Consensus       438 r~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~l  514 (591)
T PRK11269        438 RNVVALSGDYDFQFL--IEELAVGAQFNLPYIHVLVNNA-YLGLIRQAQRAFDMDYCVQLAFENINSPELNGYGVDHVKV  514 (591)
T ss_pred             CcEEEEEccchhhcC--HHHHHHHHHhCCCeEEEEEeCC-chhHHHHHHHHhccCccceeeccccccccccCCCCCHHHH
Confidence            999999999999999  9999999999999999999998 333322111          0            23799999


Q ss_pred             cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      |++||+++.+|+..+  ++..++++|++...+.++|+||||.+.+..
T Consensus       515 A~a~G~~~~~v~~~~--eL~~al~~a~~~~~~~~gp~lieV~v~~~~  559 (591)
T PRK11269        515 AEGLGCKAIRVFKPE--DIAPALEQAKALMAEFRVPVVVEVILERVT  559 (591)
T ss_pred             HHHCCCeEEEECCHH--HHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence            999999999997665  655555554433334789999999997643

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=99.85  E-value=2.3e-21  Score=202.92  Aligned_cols=153  Identities=21%  Similarity=0.279  Sum_probs=121.0

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.++....++  +...|.|....|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       358 ~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~lpaAiGa~la-----------~p~  426 (574)
T PRK09124        358 PIHPQYLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAA-----------HPG  426 (574)
T ss_pred             cCCHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccchHHHHHHHHHh-----------CCC
Confidence            36788888888877664  4567777665442       23344  36789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++....           ....+||+++|++||+++++|
T Consensus       427 r~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v  503 (574)
T PRK09124        427 RQVVALSGDGGFSML--MGDFLSLVQLKLPVKIVVFNNS-VLGFVAMEMKAGGYLTDGTDLHNPDFAAIAEACGITGIRV  503 (574)
T ss_pred             CeEEEEecCcHHhcc--HHHHHHHHHhCCCeEEEEEeCC-ccccHHHHHHhcCCccccCcCCCCCHHHHHHHCCCeEEEe
Confidence            999999999999999  9999999999999999999997 33332111           113579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +..+  +    ++.|++++.+.++|+||||.+.+.
T Consensus       504 ~~~~--e----L~~al~~a~~~~~p~lIev~i~~~  532 (574)
T PRK09124        504 EKAS--E----LDGALQRAFAHDGPALVDVVTAKQ  532 (574)
T ss_pred             CCHH--H----HHHHHHHHHhCCCCEEEEEEecCc
Confidence            8665  4    556666667778999999999754

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=99.85  E-value=1.4e-21  Score=204.69  Aligned_cols=158  Identities=22%  Similarity=0.241  Sum_probs=122.8

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      ++++..++.++....+.  ++..|.|+++.|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus       380 ~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~  448 (579)
T TIGR03457       380 WLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFEKPRKFLAPMSFGNCGYAFPTIIGAKIA-----------APD  448 (579)
T ss_pred             CcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcCCCCeEEcCCccccccchHHHHHhhhhh-----------CCC
Confidence            47899999999887764  4667778764442       23344  35679999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------cCC-cchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSD-PQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~~~-~d~~~~A~a~Gi~~~  291 (361)
                      ++|||++|||+|+|+  .+||.||++++||+++||.||+ ++++.+..|            ... +||+++|++||++++
T Consensus       449 ~~Vv~i~GDG~f~m~--~~eL~Tavr~~lpvi~vV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~g~  525 (579)
T TIGR03457       449 RPVVAYAGDGAWGMS--MNEIMTAVRHDIPVTAVVFRNR-QWGAEKKNQVDFYNNRFVGTELESELSFAGIADAMGAKGV  525 (579)
T ss_pred             CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECc-chHHHHHHHHHhhCCcceeccCCCCCCHHHHHHHCCCeEE
Confidence            999999999999999  8999999999999999999998 444432111            122 599999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                      +|+..+  ++..++++|++.. +.++|+||||.+.+..+
T Consensus       526 ~v~~~~--el~~al~~a~~~~-~~~~p~lieV~v~~~~~  561 (579)
T TIGR03457       526 VVDKPE--DVGPALKKAIAAQ-AEGKTTVIEIVCTRELG  561 (579)
T ss_pred             EECCHH--HHHHHHHHHHhhC-CCCCcEEEEEEeCCCcC
Confidence            998655  6655555555432 25789999999977553

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=99.85  E-value=2.5e-21  Score=202.14  Aligned_cols=153  Identities=21%  Similarity=0.331  Sum_probs=121.4

Q ss_pred             CCCHHHHHHHHhcCcCC-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.++....++ ++..|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .+++
T Consensus       365 ~l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~  433 (561)
T PRK06048        365 VIKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAIGAKVG-----------KPDK  433 (561)
T ss_pred             CcCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHHHHHHh-----------CCCC
Confidence            46788899998877765 4556777654432       23344  45679999999999999999           6899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------c--cCCcchhhccccCCccEEE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A--TSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q--~~~~d~~~~A~a~Gi~~~~  292 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..           .  ...+||.++|++||+++++
T Consensus       434 ~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~  510 (561)
T PRK06048        434 TVIDIAGDGSFQMN--SQELATAVQNDIPVIVAILNNG-YLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEAYGALGLR  510 (561)
T ss_pred             cEEEEEeCchhhcc--HHHHHHHHHcCCCeEEEEEECC-ccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence            99999999999999  8999999999999999999998 44433211           0  1357999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      |+..+      ++++|++++.+.++|+||||.+.+.
T Consensus       511 v~t~~------el~~al~~a~~~~~p~liev~~~~~  540 (561)
T PRK06048        511 VEKPS------EVRPAIEEAVASDRPVVIDFIVECE  540 (561)
T ss_pred             ECCHH------HHHHHHHHHHhCCCCEEEEEEecCc
Confidence            98766      4566666666788999999999763

>PRK07524 hypothetical protein; Provisional

Probab=99.85  E-value=2.2e-21  Score=201.42  Aligned_cols=154  Identities=21%  Similarity=0.286  Sum_probs=120.6

Q ss_pred             CCHHHHHHHHhcCcCC-CcccCCCcccccc-------ccccc---cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG-CCRGQGGSMHMFS-------KEHNL---LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g-~~~gd~G~~h~~~-------~~~~~---~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .++.+++.++....++ +...|.|+..++.       .+..+   .+++|+||+++|+|+|+++|           .|++
T Consensus       358 ~~~~~~~~~l~~~l~~~~i~~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~aiGa~lA-----------~p~~  426 (535)
T PRK07524        358 AAQVALLDTILAALPDAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAAIGAALG-----------APER  426 (535)
T ss_pred             cCHHHHHHHHHHhCCCCEEEeCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHHHHHHHh-----------CCCC
Confidence            4567788888877765 4556777644431       23333   35679999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc-----------cccCCcchhhccccCCccEEEEe
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-----------RATSDPQIYKKGPAFGMPGFHVD  294 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-----------~q~~~~d~~~~A~a~Gi~~~~Vd  294 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+.           .....+||.++|++||+++++|+
T Consensus       427 ~vv~i~GDG~f~~~--~~el~ta~~~~lpi~~vV~NN~-~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~  503 (535)
T PRK07524        427 PVVCLVGDGGLQFT--LPELASAVEADLPLIVLLWNND-GYGEIRRYMVARDIEPVGVDPYTPDFIALARAFGCAAERVA  503 (535)
T ss_pred             cEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECC-chHHHHHHHHHhcCCccccCCCCCCHHHHHHHCCCcEEEeC
Confidence            99999999999998  8999999999999999999996 3333221           11245799999999999999997


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                      ..  .+    +++|++++++.++|+||||.++|+.+
T Consensus       504 ~~--~e----l~~al~~a~~~~~p~liev~~~~~~~  533 (535)
T PRK07524        504 DL--EQ----LQAALRAAFARPGPTLIEVDQACWFA  533 (535)
T ss_pred             CH--HH----HHHHHHHHHhCCCCEEEEEECCcccc
Confidence            44  34    56677777778999999999999875

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=99.85  E-value=1.9e-21  Score=202.15  Aligned_cols=152  Identities=15%  Similarity=0.111  Sum_probs=120.8

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.++...+++  ++..|.|++.++.      .+.++  .+++|+||+++|+|+|+++|           .|++
T Consensus       355 ~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~  423 (539)
T TIGR03393       355 ALSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQTA-----------CPNR  423 (539)
T ss_pred             ccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHhc-----------CCCC
Confidence            37889999999887763  5667777754321      12233  46789999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc--------ccCCcchhhccccCCcc----EEEE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------ATSDPQIYKKGPAFGMP----GFHV  293 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~--------q~~~~d~~~~A~a~Gi~----~~~V  293 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..        ....+||.++|++||++    +++|
T Consensus       424 ~vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~-~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~~~v  500 (539)
T TIGR03393       424 RVILLIGDGSAQLT--IQELGSMLRDKQHPIILVLNNE-GYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSECWRV  500 (539)
T ss_pred             CeEEEEcCcHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccceEEe
Confidence            99999999999999  9999999999999999999998 44443221        12357999999999996    8999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      +..+      ++++|++++++.++|+||||.+.+
T Consensus       501 ~~~~------el~~al~~a~~~~~p~liev~i~~  528 (539)
T TIGR03393       501 SEAE------QLADVLEKVAAHERLSLIEVVLPK  528 (539)
T ss_pred             ccHH------HHHHHHHHHhccCCeEEEEEEcCc
Confidence            8765      456677777788999999999853

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>PTZ00089 transketolase; Provisional

Probab=99.85  E-value=5.5e-20  Score=195.14  Aligned_cols=157  Identities=22%  Similarity=0.210  Sum_probs=129.5

Q ss_pred             cCCccccccccHHHHHHHHHHHHHHhhhhhc---CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCccc
Q 018048          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAI  266 (361)
Q Consensus       191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~---~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~i  266 (361)
                      ...+|++|.+++.|+|+|+|.|+++..+...   ..+..|+|++|||++++|.++|+|++|+.++|| +|+||+||+|++
T Consensus       112 ~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i  191 (661)
T PTZ00089        112 EVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITI  191 (661)
T ss_pred             ccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCccc
Confidence            3468999999999999999999875332211   126789999999999999999999999999998 899999999999


Q ss_pred             ccccccccCCcchhhccccCCccEEEE-eCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCC----CC
Q 018048          267 GMSHLRATSDPQIYKKGPAFGMPGFHV-DGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE----LR  340 (361)
Q Consensus       267 s~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~-D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~----yR  340 (361)
                      +.+...+ ...++.++.++|||+++.| ||+ |+.++++++++|.+.   .++|++|+++|+|..||.+.++..    ++
T Consensus       192 ~~~~~~~-~~~~~~~~f~a~G~~~i~v~dG~~D~~~l~~a~~~a~~~---~~~P~~I~~~T~kG~G~~~e~~~~~H~~~~  267 (661)
T PTZ00089        192 DGNTDLS-FTEDVEKKYEAYGWHVIEVDNGNTDFDGLRKAIEEAKKS---KGKPKLIIVKTTIGYGSSKAGTEKVHGAPL  267 (661)
T ss_pred             ccCcccc-cCccHHHHHHhcCCcEEEeCCCCCCHHHHHHHHHHHHhc---CCCcEEEEEEeeecCCCCcCCCCCccCCCC
Confidence            8876654 3568899999999999999 999 999988777665432   268999999999999987776543    56


Q ss_pred             CHHHHHhHHHh
Q 018048          341 DPGEHLVLVLF  351 (361)
Q Consensus       341 ~~~e~~~~~~~  351 (361)
                      +++|++.+...
T Consensus       268 ~~~~~~~~~~~  278 (661)
T PTZ00089        268 GDEDIAQVKEL  278 (661)
T ss_pred             CHHHHHHHHHH
Confidence            77887777664

>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=99.85  E-value=8.4e-22  Score=172.23  Aligned_cols=115  Identities=33%  Similarity=0.500  Sum_probs=96.5

Q ss_pred             cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc
Q 018048          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH  270 (361)
Q Consensus       191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~  270 (361)
                      ..+.++||+++|+|+|+++|           .|+++||+++|||+|.++  .++|.|++++++|+++||.||+ +++...
T Consensus        24 ~~~~g~mG~~~~~aiGa~~a-----------~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~-~~~~~~   89 (153)
T PF02775_consen   24 SGGFGSMGYALPAAIGAALA-----------RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNG-GYGMTG   89 (153)
T ss_dssp             STTTT-TTTHHHHHHHHHHH-----------STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESS-BSHHHH
T ss_pred             CCCccccCCHHHhhhHHHhh-----------cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCC-cceEec
Confidence            46889999999999999999           789999999999999998  9999999999999999999998 443322


Q ss_pred             ccc---------------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          271 LRA---------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       271 ~~q---------------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      ..+               ...+|+.++|++||+++++|+..|++++    +++++++++.++|+||||
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~~el----~~al~~a~~~~gp~vIeV  153 (153)
T PF02775_consen   90 GQQTPFGGGRFSGVDGKTFPNPDFAALAEAFGIKGARVTTPDPEEL----EEALREALESGGPAVIEV  153 (153)
T ss_dssp             HHHHHTTSTCHHSTBTTTSTTCGHHHHHHHTTSEEEEESCHSHHHH----HHHHHHHHHSSSEEEEEE
T ss_pred             cccccCcCcccccccccccccCCHHHHHHHcCCcEEEEccCCHHHH----HHHHHHHHhCCCcEEEEc
Confidence            111               3467999999999999999998876765    455556667899999997

It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=99.85  E-value=2.5e-21  Score=203.59  Aligned_cols=155  Identities=21%  Similarity=0.264  Sum_probs=122.2

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCccccccc-------cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-------~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      +++|..++.++....+.  +...|.|++..|..       +.++  ++++|+||+++|+|+|+++|           .|+
T Consensus       365 ~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~glpaaiGa~la-----------~p~  433 (597)
T PRK08273        365 PVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTLATMGPAVPYAIAAKFA-----------HPD  433 (597)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCccccccchHHHHHHHHHh-----------CCC
Confidence            58899999999887764  45677887655421       2233  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhC-----CCCeEEEEEcCCccccccccc--------------ccCCcchhhcccc
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALW-----KLPIVFVVENNLWAIGMSHLR--------------ATSDPQIYKKGPA  285 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~-----~LPvi~VV~NN~y~is~~~~~--------------q~~~~d~~~~A~a  285 (361)
                      ++|||++|||+|+|+. .+||.||++|     ++|+++||.||+ ++++.+..              ..+.+||+++|++
T Consensus       434 ~~Vv~i~GDG~f~m~~-~~EL~Ta~r~~~~~~~lpviivV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~~d~~~lA~a  511 (597)
T PRK08273        434 RPVIALVGDGAMQMNG-MAELITVAKYWRQWSDPRLIVLVLNNR-DLNQVTWEQRVMEGDPKFEASQDLPDVPYARFAEL  511 (597)
T ss_pred             CcEEEEEcchhHhccc-hHHHHHHHHHhhcccCCCEEEEEEeCC-cchHHHHHHHHhcCCCcccccccCCCCCHHHHHHH
Confidence            9999999999999872 3999999999     899999999998 44332211              0134789999999


Q ss_pred             CCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          286 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       286 ~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      ||+++++|+..+  +    ++.+++++.+.++|+||||.+.+..
T Consensus       512 ~G~~~~~v~~~~--e----L~~al~~a~~~~~p~lIeV~~~~~~  549 (597)
T PRK08273        512 LGLKGIRVDDPE--Q----LGAAWDEALAADRPVVLEVKTDPNV  549 (597)
T ss_pred             CCCEEEEECCHH--H----HHHHHHHHHhCCCCEEEEEEeCCCC
Confidence            999999998665  4    5666666667799999999997653

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=99.85  E-value=2.6e-21  Score=202.41  Aligned_cols=154  Identities=20%  Similarity=0.325  Sum_probs=123.1

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.+|....++  ++..+.|++.+|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       371 ~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la-----------~p~  439 (572)
T PRK06456        371 KLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSSGMGTMGFGLPAAMGAKLA-----------RPD  439 (572)
T ss_pred             CcCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCCCcccccchhHHHHHHHHh-----------CCC
Confidence            47889999999887764  4556777655442       23343  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|             ...+||.++|++||++++
T Consensus       440 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~ivV~NN~-~yg~i~~~q~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~  516 (572)
T PRK06456        440 KVVVDLDGDGSFLMT--GTNLATAVDEHIPVISVIFDNR-TLGLVRQVQDLFFGKRIVGVDYGPSPDFVKLAEAFGALGF  516 (572)
T ss_pred             CeEEEEEccchHhcc--hHHHHHHHHhCCCeEEEEEECC-chHHHHHHHHHhhCCCcccccCCCCCCHHHHHHHCCCeeE
Confidence            999999999999999  8999999999999999999998 444433211             124799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +|+..+  +    ++++++++++.++|+||||.+.+..
T Consensus       517 ~v~~~~--e----L~~al~~a~~~~~p~lIev~v~~~~  548 (572)
T PRK06456        517 NVTTYE--D----IEKSLKSAIKEDIPAVIRVPVDKEE  548 (572)
T ss_pred             EeCCHH--H----HHHHHHHHHhCCCCEEEEEEeCccc
Confidence            998665  4    5666777777789999999998643

>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor

Probab=99.85  E-value=5e-21  Score=174.29  Aligned_cols=135  Identities=23%  Similarity=0.203  Sum_probs=100.5

Q ss_pred             CcccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCc-ccCcchHHHHHHhhh
Q 018048          173 CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAAL  250 (361)
Q Consensus       173 ~~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs-~~~g~~~eeL~tA~~  250 (361)
                      ++..|.|.. .|.. -.++....++||+++|+|+|+++|           .|+++||+++|||+ ++|+  .+||.||++
T Consensus        29 ii~~D~G~~-~~~~~~~~~~~~~g~mG~glpaAiGa~la-----------~p~r~Vv~i~GDGs~f~m~--~~eL~ta~~   94 (193)
T cd03375          29 VVVSGIGCS-SRLPYYFNTYGFHTLHGRALAVATGVKLA-----------NPDLTVIVVSGDGDLAAIG--GNHFIHAAR   94 (193)
T ss_pred             EEEeCCChh-ceehhhccccchhhhhccHHHHHHHHHHh-----------CCCCeEEEEeccchHhhcc--HHHHHHHHH
Confidence            466777764 3332 122334458999999999999999           79999999999999 5788  999999999


Q ss_pred             CCCCeEEEEEcCCccccccccccc------------------CCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHH
Q 018048          251 WKLPIVFVVENNLWAIGMSHLRAT------------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIER  311 (361)
Q Consensus       251 ~~LPvi~VV~NN~y~is~~~~~q~------------------~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~  311 (361)
                      +++|+++||.||+ +++.....+.                  ..+|+.++|++||++++ ++.-.++.++    +.|+++
T Consensus        95 ~~lpv~iiVlnN~-~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~~~~~~~~v~~~~el----~~al~~  169 (193)
T cd03375          95 RNIDITVIVHNNQ-IYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALALAAGATFVARGFSGDIKQL----KEIIKK  169 (193)
T ss_pred             hCCCeEEEEEcCc-ccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHHHHCCCCEEEEEecCCHHHH----HHHHHH
Confidence            9999999999998 4444332110                  13689999999999996 2223345555    445555


Q ss_pred             HHcCCCCEEEEEEEe
Q 018048          312 ARRGEGPTLVECETY  326 (361)
Q Consensus       312 ar~~~gP~lIev~t~  326 (361)
                      +++.++|+|||+.+.
T Consensus       170 al~~~gp~vIev~~~  184 (193)
T cd03375         170 AIQHKGFSFVEVLSP  184 (193)
T ss_pred             HHhcCCCEEEEEECC
Confidence            556789999999763

In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=99.85  E-value=5.5e-21  Score=200.16  Aligned_cols=154  Identities=21%  Similarity=0.307  Sum_probs=121.0

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.+|....++  ++..|.|....|.       .+..+  .+++|+||+++|+|+|+++|           .|+
T Consensus       358 ~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~glpaAiGa~la-----------~p~  426 (575)
T TIGR02720       358 PLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGVGVPGAIAAKLN-----------YPD  426 (575)
T ss_pred             CcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhchHHHHHHHHHh-----------CCC
Confidence            47888999999887764  4567777755553       22333  35689999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++||+++|||+|+|+  .+||.|++++++|+++||.||+ ++++....           ....+||+++|++||+++.+|
T Consensus       427 r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~df~~iA~a~G~~~~~v  503 (575)
T TIGR02720       427 RQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNC-TYGFIKDEQEDTNQPLIGVDFNDADFAKIAEGVGAVGFRV  503 (575)
T ss_pred             CcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHhCCCcccccCCCCCHHHHHHHCCCEEEEe
Confidence            999999999999998  9999999999999999999888 34432211           123579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHH--cCCCCEEEEEEEecCC
Q 018048          294 DGMDVLKVREVAKEAIERAR--RGEGPTLVECETYRFR  329 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar--~~~gP~lIev~t~R~~  329 (361)
                      +..+  ++    +++++++.  +.++|+||||.++...
T Consensus       504 ~~~~--el----~~al~~a~~~~~~~p~liev~i~~~~  535 (575)
T TIGR02720       504 NKIE--QL----PAVFEQAKAIKQGKPVLIDAKITGDR  535 (575)
T ss_pred             CCHH--HH----HHHHHHHHhhCCCCcEEEEEEeCCCC
Confidence            8665  55    44555555  6789999999997643

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=99.85  E-value=2.9e-21  Score=202.61  Aligned_cols=152  Identities=23%  Similarity=0.432  Sum_probs=122.3

Q ss_pred             CCCHHHHHHHHhcCcCC-CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048          156 GVPARAVMSELFGKATG-CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g-~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~  226 (361)
                      ++++.+++.++....++ +...|+|.+..|.      .+.++  .+++|+||+++|+|+|+++|           .++++
T Consensus       382 ~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGaala-----------~p~~~  450 (585)
T CHL00099        382 SLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSAGLGTMGYGLPAAIGAQIA-----------HPNEL  450 (585)
T ss_pred             CcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCccccchhhhHHHHHHHHHh-----------CCCCe
Confidence            58899999999887665 4567777654442      23333  46789999999999999999           68999


Q ss_pred             EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc--------------cCCcchhhccccCCccEEE
Q 018048          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------TSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q--------------~~~~d~~~~A~a~Gi~~~~  292 (361)
                      ||+++|||+|+|+  .+||.||+++++|+++||.||+ +++..+..|              ...+||.++|++||+++.+
T Consensus       451 vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~  527 (585)
T CHL00099        451 VICISGDASFQMN--LQELGTIAQYNLPIKIIIINNK-WQGMVRQWQQAFYGERYSHSNMEEGAPDFVKLAEAYGIKGLR  527 (585)
T ss_pred             EEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECC-cchHHHHHHHHhcCCCcccccCCCCCCCHHHHHHHCCCeEEE
Confidence            9999999999999  9999999999999999999998 444432211              1247999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      |+..+      ++++|++++++.++|+||||.+.+
T Consensus       528 v~~~~------el~~al~~a~~~~~p~liev~v~~  556 (585)
T CHL00099        528 IKSRK------DLKSSLKEALDYDGPVLIDCQVIE  556 (585)
T ss_pred             eCCHH------HHHHHHHHHHhCCCCEEEEEEECC
Confidence            98755      456677777778899999999975

>PRK08617 acetolactate synthase; Reviewed

Probab=99.85  E-value=2.7e-21  Score=201.45  Aligned_cols=154  Identities=21%  Similarity=0.249  Sum_probs=123.8

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      ++++..++.+|....++  ++..|.|+++.|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       364 ~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~  432 (552)
T PRK08617        364 AVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALPWAIAAALV-----------RPG  432 (552)
T ss_pred             CcCHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhccccCCCeEEecCccccccccccHHHhhHhh-----------cCC
Confidence            47888899998887764  4567777765542       23333  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|           ...+||.++|++||+++.+|
T Consensus       433 ~~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v  509 (552)
T PRK08617        433 KKVVSVSGDGGFLFS--AMELETAVRLKLNIVHIIWNDG-HYNMVEFQEEMKYGRSSGVDFGPVDFVKYAESFGAKGLRV  509 (552)
T ss_pred             CcEEEEEechHHhhh--HHHHHHHHHhCCCeEEEEEECC-ccchHHHHHHhhcCCcccCCCCCCCHHHHHHHCCCeEEEE
Confidence            999999999999999  9999999999999999999998 555443211           13579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +..+      ++++|++++++.++|+||||.+++..
T Consensus       510 ~~~~------eL~~al~~a~~~~~p~liev~~~~~~  539 (552)
T PRK08617        510 TSPD------ELEPVLREALATDGPVVIDIPVDYSD  539 (552)
T ss_pred             CCHH------HHHHHHHHHHhCCCcEEEEEEecccc
Confidence            8765      45667777777889999999997643

>PLN02470 acetolactate synthase

Probab=99.85  E-value=2.8e-21  Score=202.76  Aligned_cols=153  Identities=24%  Similarity=0.335  Sum_probs=121.7

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.++....++  ++..|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus       376 ~l~~~~~~~~l~~~~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaaiGa~la-----------~p~  444 (585)
T PLN02470        376 AIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAMGFGLPAAIGAAAA-----------NPD  444 (585)
T ss_pred             CcCHHHHHHHHHhhCCCCEEEEECCcHHHHHHHHhcccCCCCeEEcCCccccccchHHHHHHHHHh-----------CCC
Confidence            47888999999887764  4556777655442       23444  46779999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------c-C--------Ccchhhccc
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------T-S--------DPQIYKKGP  284 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~-~--------~~d~~~~A~  284 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.++.|           . .        .+||+++|+
T Consensus       445 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~v~ivV~NN~-~yg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA~  521 (585)
T PLN02470        445 AIVVDIDGDGSFIMN--IQELATIHVENLPVKIMVLNNQ-HLGMVVQWEDRFYKANRAHTYLGDPDAEAEIFPDFLKFAE  521 (585)
T ss_pred             CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHHHHHHHHhCCceeeeecCccccccCCCCCHHHHHH
Confidence            999999999999999  9999999999999999999998 444332110           0 1        279999999


Q ss_pred             cCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       285 a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +||+++.+|+..+  +    +++|++++++.++|+||||.+.+.
T Consensus       522 a~G~~~~~v~~~~--e----l~~al~~a~~~~~p~lieV~i~~~  559 (585)
T PLN02470        522 GCKIPAARVTRKS--D----LREAIQKMLDTPGPYLLDVIVPHQ  559 (585)
T ss_pred             HCCCeEEEECCHH--H----HHHHHHHHHhCCCCEEEEEEeCCc
Confidence            9999999998765  4    566666666778999999999753

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.85  E-value=5.5e-21  Score=199.66  Aligned_cols=154  Identities=25%  Similarity=0.392  Sum_probs=123.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.++....++  +...|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus       364 ~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la-----------~p~  432 (563)
T PRK08527        364 VLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYGLPAALGAKLA-----------VPD  432 (563)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence            37888999999888764  4667778654442       23344  46679999999999999999           688


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++|||++|||+|+|+  .+||.||++++||+++||.||+ +++..+..|             ...+||.++|++||++++
T Consensus       433 ~~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~  509 (563)
T PRK08527        433 KVVINFTGDGSILMN--IQELMTAVEYKIPVINIILNNN-FLGMVRQWQTFFYEERYSETDLSTQPDFVKLAESFGGIGF  509 (563)
T ss_pred             CcEEEEecCchhccc--HHHHHHHHHhCCCeEEEEEECC-cchhHHHHHHhhcCCceeeccCCCCCCHHHHHHHCCCeEE
Confidence            999999999999998  8999999999999999999998 444433211             124799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +|+..+  +    +++|++++++.++|+||||.+++..
T Consensus       510 ~v~~~~--e----l~~al~~a~~~~~p~lieV~v~~~~  541 (563)
T PRK08527        510 RVTTKE--E----FDKALKEALESDKVALIDVKIDRFE  541 (563)
T ss_pred             EECCHH--H----HHHHHHHHHhCCCCEEEEEEECCcc
Confidence            998665  4    5666777777789999999998744

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=99.84  E-value=3.4e-21  Score=200.65  Aligned_cols=153  Identities=22%  Similarity=0.364  Sum_probs=121.4

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC-
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC-  223 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~-  223 (361)
                      .+++..++.++....++  ++..|.|....|.       .+.++  .+++|+||+++|+|+|+++|           .+ 
T Consensus       346 ~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~  414 (549)
T PRK06457        346 PMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFA-----------VEN  414 (549)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhc-----------CCC
Confidence            46788899999887764  4556777755442       12333  35689999999999999999           67 


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEE
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~  292 (361)
                      +++|||++|||+|+|+  .+||.||++++||+++||.||+ ++++.+..|           ...+||.++|++||+++.+
T Consensus       415 ~~~Vv~i~GDGsf~~~--~~eL~Ta~~~~lpi~ivV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~  491 (549)
T PRK06457        415 KRQVISFVGDGGFTMT--MMELITAKKYDLPVKIIIYNNS-KLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGFR  491 (549)
T ss_pred             CCeEEEEEcccHHhhh--HHHHHHHHHHCCCeEEEEEECC-ccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEE
Confidence            8999999999999999  9999999999999999999998 444432211           1257999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      |+..+  +    ++.+++++.+.++|+||||.+.+.
T Consensus       492 v~~~~--e----l~~al~~a~~~~~p~lIeV~i~~~  521 (549)
T PRK06457        492 LEEPK--E----AEEIIEEFLNTKGPAVLDAIVDPN  521 (549)
T ss_pred             eCCHH--H----HHHHHHHHHhCCCCEEEEEEeCcc
Confidence            98654  4    566666677788999999999753

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=99.84  E-value=3.5e-21  Score=201.48  Aligned_cols=153  Identities=25%  Similarity=0.450  Sum_probs=122.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|..++.+|....+.  +...|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus       374 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGaala-----------~p~  442 (571)
T PRK07710        374 SIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPAAIGAQLA-----------KPD  442 (571)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCC
Confidence            47888999999887753  4567777654432       22333  46779999999999999999           689


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||+||+++++|+++||.||+ +++..+..|             ...+||+++|++||+++.
T Consensus       443 ~~vv~i~GDGsf~m~--~~eL~ta~r~~lpi~ivV~NN~-~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~  519 (571)
T PRK07710        443 ETVVAIVGDGGFQMT--LQELSVIKELSLPVKVVILNNE-ALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLAEAYGIKGV  519 (571)
T ss_pred             CcEEEEEcchHHhhh--HHHHHHHHHhCCCeEEEEEECc-hHHHHHHHHHHHhCCcceeccCCCCCCHHHHHHHCCCeEE
Confidence            999999999999998  8999999999999999999998 444332111             135799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +|+..+      +++.|++++++.++|+||||.+++.
T Consensus       520 ~v~~~~------el~~al~~a~~~~~p~lieV~vd~~  550 (571)
T PRK07710        520 RIDDEL------EAKEQLQHAIELQEPVVIDCRVLQS  550 (571)
T ss_pred             EECCHH------HHHHHHHHHHhCCCCEEEEEEecCc
Confidence            998765      4566777777788999999999764

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=99.84  E-value=4.8e-21  Score=200.77  Aligned_cols=153  Identities=23%  Similarity=0.266  Sum_probs=120.9

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++..+....++  +...|.|..+.|.       .+.++  .+.+|+||+++|+|+|+++|           .++
T Consensus       358 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~~paAiGa~la-----------~p~  426 (578)
T PRK06546        358 PIHPEYVASILDELAADDAVFTVDTGMCNVWAARYITPNGRRRVIGSFRHGSMANALPHAIGAQLA-----------DPG  426 (578)
T ss_pred             CcCHHHHHHHHHHhccCCcEEEECCcHHHHHHHHhcCCCCCceEEccCCcccccchhHHHHHHHHh-----------CCC
Confidence            36788888888877664  4556777665442       12333  35679999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||+||+ ++++.+..           ....+||+++|++||+++++|
T Consensus       427 ~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v  503 (578)
T PRK06546        427 RQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNS-TLGMVKLEMLVDGLPDFGTDHPPVDYAAIAAALGIHAVRV  503 (578)
T ss_pred             CcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECC-ccccHHHHHHhcCCCcccccCCCCCHHHHHHHCCCeeEEe
Confidence            999999999999998  8999999999999999999998 44443211           123579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +..  .++    ++|++++.+.++|+||||.+.+.
T Consensus       504 ~~~--~el----~~al~~a~~~~gp~lIev~~~~~  532 (578)
T PRK06546        504 EDP--KDV----RGALREAFAHPGPALVDVVTDPN  532 (578)
T ss_pred             CCH--HHH----HHHHHHHHhCCCCEEEEEEeCCC
Confidence            854  454    55666666788999999999765

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=99.84  E-value=6.5e-21  Score=198.41  Aligned_cols=154  Identities=24%  Similarity=0.417  Sum_probs=123.0

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....+.  +...|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       351 ~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la-----------~p~  419 (548)
T PRK08978        351 AIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVA-----------RPD  419 (548)
T ss_pred             CcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHh-----------CCC
Confidence            47888999998887764  4667777755442       23344  46779999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc----------c---CCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA----------T---SDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q----------~---~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ +++..+..|          .   ..+||.++|++||+++.
T Consensus       420 ~~vv~i~GDG~f~~~--~~eL~ta~~~~l~v~ivV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~  496 (548)
T PRK08978        420 DTVICVSGDGSFMMN--VQELGTIKRKQLPVKIVLLDNQ-RLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQ  496 (548)
T ss_pred             CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-ccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEE
Confidence            999999999999999  9999999999999999999997 444332111          1   34799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +|+..+  +    +++|++++.+.++|+||||.+.+..
T Consensus       497 ~v~~~~--e----l~~al~~a~~~~~p~lIeV~id~~~  528 (548)
T PRK08978        497 TITRKD--Q----VEAALDTLLNSEGPYLLHVSIDELE  528 (548)
T ss_pred             EECCHH--H----HHHHHHHHHhCCCCEEEEEEecCcc
Confidence            998765  4    5666677777889999999998754

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=99.84  E-value=7.4e-21  Score=198.66  Aligned_cols=153  Identities=20%  Similarity=0.353  Sum_probs=121.1

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....++  ++..|.|+...|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       369 ~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~~~  437 (564)
T PRK08155        369 PLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALA-----------NPE  437 (564)
T ss_pred             CcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHHhccccCCCeEEeCCCcccccchhHHHHHHHHh-----------CCC
Confidence            46788899998887764  4567777644432       23344  46779999999999999999           689


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .++|.||+++++|+++||.||+ ++++.+..|             ...+||+++|++||++++
T Consensus       438 ~~vv~i~GDGsf~~~--~~eL~ta~~~~lpvi~vV~NN~-~~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~  514 (564)
T PRK08155        438 RKVLCFSGDGSLMMN--IQEMATAAENQLDVKIILMNNE-ALGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGFGLETC  514 (564)
T ss_pred             CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCC-cccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHCCCeEE
Confidence            999999999999998  8999999999999999999998 333322111             134799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +|+..+  +    +..+++++++.++|+||||.+.+.
T Consensus       515 ~v~~~~--e----l~~al~~a~~~~~p~lIeV~~~~~  545 (564)
T PRK08155        515 DLNNEA--D----PQAALQEAINRPGPALIHVRIDAE  545 (564)
T ss_pred             EeCCHH--H----HHHHHHHHHhCCCCEEEEEEeCCC
Confidence            998765  4    455666667778999999999754

>PRK08611 pyruvate oxidase; Provisional

Probab=99.84  E-value=5.5e-21  Score=200.22  Aligned_cols=154  Identities=23%  Similarity=0.288  Sum_probs=122.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|.+++.++...+++  +...|.|.+.+|.       .+.++  ..++|+||+++|+|+|+++|           .++
T Consensus       358 ~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~  426 (576)
T PRK08611        358 PIKPERVMAAIQKIADDDAVLSVDVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGLPGAIAAKIA-----------FPD  426 (576)
T ss_pred             CcCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhHHHHHHHHHh-----------CCC
Confidence            36888999999888775  4556777765442       12333  35679999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------ccCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..           ....+||+++|++||+++++|
T Consensus       427 ~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v  503 (576)
T PRK08611        427 RQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQ-QLAFIKYEQQAAGELEYAIDLSDMDYAKFAEACGGKGYRV  503 (576)
T ss_pred             CcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCC-cchHHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEEEe
Confidence            999999999999999  9999999999999999999997 44432211           113579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +..+      ++++|++++++.++|+||||.+++..
T Consensus       504 ~~~~------eL~~al~~a~~~~~p~lIeV~vd~~~  533 (576)
T PRK08611        504 EKAE------ELDPAFEEALAQDKPVIIDVYVDPNA  533 (576)
T ss_pred             CCHH------HHHHHHHHHHhCCCCEEEEEEeCCcc
Confidence            8765      45667777777899999999997643

>PRK08322 acetolactate synthase; Reviewed

Probab=99.84  E-value=6.9e-21  Score=198.04  Aligned_cols=151  Identities=22%  Similarity=0.361  Sum_probs=120.6

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      +++..++.++....++  ++..|.|++.+|.       .+.++  ..++|+||+++|+|+|+++|           .|++
T Consensus       357 l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~la-----------~p~~  425 (547)
T PRK08322        357 MKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIAAKLV-----------HPDR  425 (547)
T ss_pred             cCHHHHHHHHHHHCCCCeEEEECCcHHHHHHHHhcccCCCCCEEcCCCcccccchhHHHHHHHHh-----------CCCC
Confidence            6788899998887764  4667777754542       13333  46789999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEEe
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHVD  294 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~Vd  294 (361)
                      +||+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|           ...+||+++|++||+++++|+
T Consensus       426 ~vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~iiV~NN~-~~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~~v~  502 (547)
T PRK08322        426 KVLAVCGDGGFMMN--SQELETAVRLGLPLVVLILNDN-AYGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGAKGYRVE  502 (547)
T ss_pred             cEEEEEcchhHhcc--HHHHHHHHHhCCCeEEEEEeCC-CcchHHHHHHhhcCCcccccCCCCCHHHHHHHCCCeEEEeC
Confidence            99999999999999  8999999999999999999998 444432211           135799999999999999997


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ..+  +    ++++++++++.++|+||||.+++
T Consensus       503 ~~~--e----L~~al~~a~~~~~p~lIev~v~~  529 (547)
T PRK08322        503 SAD--D----LLPTLEEALAQPGVHVIDCPVDY  529 (547)
T ss_pred             CHH--H----HHHHHHHHHhCCCCEEEEEEecC
Confidence            654  4    45666666677899999999865

>PRK12754 transketolase; Reviewed

Probab=99.84  E-value=3.2e-20  Score=196.23  Aligned_cols=160  Identities=23%  Similarity=0.240  Sum_probs=129.0

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++-..+|++|.+++.|+|+|+|.|+++..+...+   .+..|+|++|||++++|.++|++++|+.++|| +|+||+||+|
T Consensus       108 gve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~  187 (663)
T PRK12754        108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI  187 (663)
T ss_pred             CccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCC
Confidence            4456789999999999999999998864433222   36889999999999999999999999999999 8899999999


Q ss_pred             ccccccccccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-C-CC---C
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-D-PD---E  338 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-D-p~---~  338 (361)
                      +++.+...+. ..++.+++++|||++++ |||+|++++.+++++|.+   ..++|++|+++|++..|.+.. + +.   .
T Consensus       188 ~idg~~~~~~-~~~~~~r~~a~Gw~vi~vvDG~D~~ai~~A~~~a~~---~~~~Pt~I~~~T~~g~G~~~~e~~~~~Hg~  263 (663)
T PRK12754        188 SIDGHVEGWF-TDDTAMRFEAYGWHVIRGIDGHDADSIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGA  263 (663)
T ss_pred             ccCcchhhcc-CccHHHHHHhcCCeEEeeECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeeeccCccccCCCccccCC
Confidence            9998877665 57899999999999999 899999887665554432   257899999999999998743 2 21   1


Q ss_pred             CCCHHHHHhHHHhh
Q 018048          339 LRDPGEHLVLVLFI  352 (361)
Q Consensus       339 yR~~~e~~~~~~~~  352 (361)
                      --+++|++....+.
T Consensus       264 ~l~~~~~~~~~~~l  277 (663)
T PRK12754        264 PLGDAEIALTREQL  277 (663)
T ss_pred             CCCHHHHHHHHHhc
Confidence            23566766665544

>PRK08266 hypothetical protein; Provisional

Probab=99.83  E-value=1.1e-20  Score=196.37  Aligned_cols=156  Identities=23%  Similarity=0.289  Sum_probs=118.7

Q ss_pred             CCHH-HHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          157 VPAR-AVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       157 ~~~~-~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      ++|+ .++.+|....++  +...++|+..+|.       .+.++  .+.+|+||+++|+|+|++++           .++
T Consensus       352 ~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la-----------~p~  420 (542)
T PRK08266        352 VQPQASYLRAIREALPDDGIFVDELSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVA-----------NPD  420 (542)
T ss_pred             CCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHh-----------CCC
Confidence            3454 367777776664  4556666554332       12333  35679999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc----------ccCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~----------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++|||++|||+|+|+  .++|.||++++||+++||.||+ |++....+.          ....+||.++|++||+++++|
T Consensus       421 ~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v  498 (542)
T PRK08266        421 RPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAFRV  498 (542)
T ss_pred             CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence            999999999999999  8999999999999999999996 543211110          013479999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH  331 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gH  331 (361)
                      +..+      ++++|++++++.++|+||||.|+|...+
T Consensus       499 ~~~~------el~~al~~a~~~~~p~liev~i~~~~~~  530 (542)
T PRK08266        499 DSPE------ELRAALEAALAHGGPVLIEVPVPRGSEA  530 (542)
T ss_pred             CCHH------HHHHHHHHHHhCCCcEEEEEEecCCCCc
Confidence            8765      4566777777788999999999887543

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=99.83  E-value=5.5e-21  Score=199.83  Aligned_cols=152  Identities=26%  Similarity=0.417  Sum_probs=120.8

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++.+++.+|....++  +...|.|++..|.       .+.++  .+++|+||+++|+|+|+++|           .|+
T Consensus       368 ~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~p~  436 (566)
T PRK07282        368 VVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAAIGAKIA-----------NPD  436 (566)
T ss_pred             CcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHhheehee-----------cCC
Confidence            47899999999887753  4667777755442       23333  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------c-CCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------T-SDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~-~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ +++..+..|            . ..+||+++|++||+++.
T Consensus       437 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~l~i~~vV~NN~-~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~  513 (566)
T PRK07282        437 KEVILFVGDGGFQMT--NQELAILNIYKVPIKVVMLNNH-SLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQAYGIKHY  513 (566)
T ss_pred             CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCC-CchHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCEEE
Confidence            999999999999999  8999999999999999999998 555433211            1 35799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +|+..+  +    +.+|++. ...++|+||||.+.+.
T Consensus       514 ~v~~~~--e----l~~al~~-~~~~~p~lIeV~v~~~  543 (566)
T PRK07282        514 KFDNPE--T----LAQDLEV-ITEDVPMLIEVDISRK  543 (566)
T ss_pred             EECCHH--H----HHHHHHH-hcCCCCEEEEEEeCCc
Confidence            998765  4    4556653 3458999999999764

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=99.83  E-value=1.2e-20  Score=197.39  Aligned_cols=154  Identities=24%  Similarity=0.394  Sum_probs=120.4

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....++  ++..|.|.+..|.       .+..+  .+++|+||+++|+|+|+++|           .++
T Consensus       371 ~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~  439 (574)
T PRK06882        371 VIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALHYPFDKPRRWINSGGAGTMGFGLPAAIGVKFA-----------HPE  439 (574)
T ss_pred             CcCHHHHHHHHHhhcCCCeEEEecCchhHHHHHHhccccCCCcEEeCCCcccccchhHHHHHHHhh-----------cCC
Confidence            36788899998887653  4556777654442       23344  46789999999999999999           688


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.++.|             ...+||.++|++||++++
T Consensus       440 ~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~-~~~~i~~~q~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~  516 (574)
T PRK06882        440 ATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNR-FLGMVKQWQDLIYSGRHSQVYMNSLPDFAKLAEAYGHVGI  516 (574)
T ss_pred             CcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECc-hhHHHHHHHHHhcCCcccccCCCCCCCHHHHHHHCCCeEE
Confidence            999999999999998  8999999999999999999998 344322110             124789999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFR  329 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~  329 (361)
                      +|+..+  +    ++.|++++++. ++|+||||.+.+..
T Consensus       517 ~v~~~~--e----L~~al~~a~~~~~~p~liev~i~~~~  549 (574)
T PRK06882        517 QIDTPD--E----LEEKLTQAFSIKDKLVFVDVNVDETE  549 (574)
T ss_pred             EeCCHH--H----HHHHHHHHHhcCCCcEEEEEEecCcc
Confidence            998766  4    55666666653 78999999998644

>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria

Probab=99.83  E-value=1.6e-20  Score=175.97  Aligned_cols=166  Identities=17%  Similarity=0.160  Sum_probs=118.5

Q ss_pred             hhcCCCCHHHHHHHHhcCcCC--CcccCCCccccc----c-------ccccccCCccccccccHHHHHHHHHHHHHHhhh
Q 018048          152 ALSKGVPARAVMSELFGKATG--CCRGQGGSMHMF----S-------KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVL  218 (361)
Q Consensus       152 ~l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~----~-------~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~  218 (361)
                      .+..|..-..++.+|...+++  +..+|.|...+|    .       ....+.+..++||+++|+|+|++++        
T Consensus         6 ~~C~gC~~~~~~~~l~~~lp~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~~~~gsmG~GlpaAiGa~~a--------   77 (235)
T cd03376           6 RACAGCGAALALRHVLKALGPDTVVVNPTGCLEVITTPYPYTAWRVPWIHVAFENAAAVASGIEAALKALGR--------   77 (235)
T ss_pred             ccCCCCccHHHHHHHHHHhhcCeEEEeCCCcccccCCcCCCccccccceehhhcCHHHHHHHHHHHHHHhcc--------
Confidence            344566666777777766654  355666655332    1       1122334558999999999999888        


Q ss_pred             hhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-ccccc-cccc--------------------ccC
Q 018048          219 KEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGM-SHLR--------------------ATS  275 (361)
Q Consensus       219 ~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~-~~~~--------------------q~~  275 (361)
                         .|+++|||++|||++ +|+  .+||.||+++++||++||.||+ |++.. ....                    ...
T Consensus        78 ---~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~  152 (235)
T cd03376          78 ---GKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQP  152 (235)
T ss_pred             ---CCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccc
Confidence               689999999999995 798  9999999999999999999998 55211 1111                    113


Q ss_pred             CcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          276 DPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                      .+|+.++|++||++++. ++-.++.++    +++++++++.++|+|||+.+.=...|...
T Consensus       153 ~~d~~~iA~a~G~~~~~~~~v~~~~el----~~al~~a~~~~gP~lIev~~~C~~~~~~~  208 (235)
T cd03376         153 KKDLPLIMAAHNIPYVATASVAYPEDL----YKKVKKALSIEGPAYIHILSPCPTGWRFD  208 (235)
T ss_pred             cCCHHHHHHHcCCcEEEEEcCCCHHHH----HHHHHHHHhCCCCEEEEEECCCCCCCCCC
Confidence            47999999999999974 444566665    44555556678999999998655544433

PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=99.83  E-value=1.7e-20  Score=196.59  Aligned_cols=153  Identities=24%  Similarity=0.311  Sum_probs=120.5

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccc-cc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEH-NL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~-~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      .+++..++.++...+++  +...|.|...+|.       ++. ++  ..++++||+++|+|+|+++|           .+
T Consensus       386 ~i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~gsmG~~l~~aiGa~la-----------~~  454 (578)
T PRK06112        386 PIRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLAGLGWGVPMAIGAKVA-----------RP  454 (578)
T ss_pred             CcCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCccccccHHHHHHHHHhh-----------CC
Confidence            47889999999988774  4556777654442       122 34  35679999999999999999           78


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------cCCcchhhccccCCccEE
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~~~~d~~~~A~a~Gi~~~  291 (361)
                      +++|||++|||+|+|+  .++|+||+++++|+++||.||+ .+++....+            ...+||.++|++||++++
T Consensus       455 ~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~~vv~NN~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~  531 (578)
T PRK06112        455 GAPVICLVGDGGFAHV--WAELETARRMGVPVTIVVLNNG-ILGFQKHAETVKFGTHTDACHFAAVDHAAIARACGCDGV  531 (578)
T ss_pred             CCcEEEEEcchHHHhH--HHHHHHHHHhCCCeEEEEEeCC-ccCCEEeccccccCCccccCcCCCCCHHHHHHHCCCeEE
Confidence            9999999999999988  9999999999999999999998 333322111            125789999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +|+..+  +    +++|++++++.+||+||||++.+.
T Consensus       532 ~v~~~~--e----l~~al~~a~~~~gp~lIev~~~~~  562 (578)
T PRK06112        532 RVEDPA--E----LAQALAAAMAAPGPTLIEVITDPS  562 (578)
T ss_pred             EeCCHH--H----HHHHHHHHHhCCCCEEEEEEcCcc
Confidence            998655  4    566777777788999999999653

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=99.83  E-value=8.2e-20  Score=193.60  Aligned_cols=159  Identities=24%  Similarity=0.287  Sum_probs=127.7

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhh---cCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~---~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++...+|++|.++|.|+|+|+|.|+.+.....   ...+.+|+|++|||++++|.+||++++|+.++|| +++||+||+|
T Consensus       104 gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~  183 (653)
T TIGR00232       104 GVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRI  183 (653)
T ss_pred             CeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCe
Confidence            45567899999999999999999987543321   1247889999999999999999999999999999 8889999999


Q ss_pred             ccccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEecCCCCCCCC--CC---
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGE-GPTLVECETYRFRGHSLAD--PD---  337 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R~~gHs~~D--p~---  337 (361)
                      +++.+...+. ..++.+++++|||++++| ||+|+.++.+    |++++++.+ +|++|+++|+|..|.+...  +.   
T Consensus       184 ~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v~DG~D~~ai~~----A~~~a~~~~~~P~~I~~~T~~g~G~~~~e~~~~~H~  258 (653)
T TIGR00232       184 SIDGAVDGSF-TEDVAKRFEAYGWEVLEVEDGHDLAAIDA----AIEEAKASKDKPTLIEVTTTIGFGSPNKAGTHGVHG  258 (653)
T ss_pred             eecccccccc-CccHHHHHHhcCCcEEEeCCCCCHHHHHH----HHHHHHhCCCCCEEEEEEeeecccCcccCCCCcccC
Confidence            9998877665 578999999999999999 9999988765    455556654 8999999999999986432  11   


Q ss_pred             CCCCHHHHHhHHHhh
Q 018048          338 ELRDPGEHLVLVLFI  352 (361)
Q Consensus       338 ~yR~~~e~~~~~~~~  352 (361)
                      .--+++|.+......
T Consensus       259 ~~~~~~~~~~~~~~l  273 (653)
T TIGR00232       259 APLGDEDVKLTKKNL  273 (653)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            112556665555443

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O

Probab=99.83  E-value=5.1e-20  Score=170.66  Aligned_cols=167  Identities=15%  Similarity=0.175  Sum_probs=135.2

Q ss_pred             CCchhHHHHHHHhcCC-CcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCcccccccc
Q 018048          123 NGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI  201 (361)
Q Consensus       123 ~GqEa~~vg~~~~l~~-~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~l  201 (361)
                      .||++.++.++..|.. +|.+++.|+.+..    |  +.++++++. . +   .|  ...|......++....|++|+++
T Consensus         2 ~GHg~~~l~a~l~l~G~~~~~~p~~~~~~~----g--l~~lf~qfs-~-~---gg--~psH~~~~tpGi~~~~G~LG~gL   68 (227)
T cd02011           2 PGHGGPAVLANLYLEGSYSEFYPEISQDEE----G--MRKLFKQFS-F-P---GG--IPSHAAPETPGSIHEGGELGYSL   68 (227)
T ss_pred             CChHHHHHHHHHHhcCCCccccccccccHH----H--HHHHHHhcC-C-C---CC--CCCCCcccCCCeeecccchhhHH
Confidence            5999998888888886 6999999986541    1  255677652 1 1   11  33466544456667789999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch---HHHHHHhhhCCCC-eEEEEEcCCcccccccccc-cCC
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP-IVFVVENNLWAIGMSHLRA-TSD  276 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~---~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q-~~~  276 (361)
                      +.|+|+++.           +++.+|+|++|||++++|.+   +++..++..+++. |+.|+.||+|.++.++... ...
T Consensus        69 s~A~G~a~d-----------~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~  137 (227)
T cd02011          69 SHAYGAVFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISH  137 (227)
T ss_pred             HHHHHhhhc-----------CCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCc
Confidence            999999875           68899999999999999986   7777777778887 8888899999999988755 456


Q ss_pred             cchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHH
Q 018048          277 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERAR  313 (361)
Q Consensus       277 ~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar  313 (361)
                      .++.+++++||++.+.|||+|++++++++++|+++++
T Consensus       138 e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~  174 (227)
T cd02011         138 EELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAI  174 (227)
T ss_pred             hhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999998765

This enzyme requires divalent magnesium ions and TPP for activity.

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=99.83  E-value=1.4e-20  Score=198.43  Aligned_cols=153  Identities=24%  Similarity=0.324  Sum_probs=120.0

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....+.  +...|.|.+..|.       .+.++  .+++|+||+++|+|+|+++|           .++
T Consensus       397 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~mG~glpaaiGa~la-----------~p~  465 (612)
T PRK07789        397 SLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGTMGYAVPAAMGAKVG-----------RPD  465 (612)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchhhhHHhhhcc-----------CCC
Confidence            47899999999887753  4567777654332       23344  46779999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc--------------c---CCcchhhccccCC
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------T---SDPQIYKKGPAFG  287 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q--------------~---~~~d~~~~A~a~G  287 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ +++..+..|              .   ..+||+++|++||
T Consensus       466 ~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G  542 (612)
T PRK07789        466 KEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNG-NLGMVRQWQTLFYEERYSNTDLHTHSHRIPDFVKLAEAYG  542 (612)
T ss_pred             CcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECC-chHHHHHHHHHhhCCCcceeecCcCCCCCCCHHHHHHHCC
Confidence            999999999999999  9999999999999999999998 444332110              0   1379999999999


Q ss_pred             ccEEEEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecC
Q 018048          288 MPGFHVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRF  328 (361)
Q Consensus       288 i~~~~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~  328 (361)
                      +++++|+..+  +    +++|++++++ .++|+||||.+.+.
T Consensus       543 ~~~~~V~~~~--e----L~~al~~a~~~~~~p~lIev~i~~~  578 (612)
T PRK07789        543 CVGLRCEREE--D----VDAVIEKARAINDRPVVIDFVVGKD  578 (612)
T ss_pred             CeEEEECCHH--H----HHHHHHHHHhcCCCcEEEEEEECCc
Confidence            9999998765  4    4556666655 37999999999763

>PLN02573 pyruvate decarboxylase

Probab=99.82  E-value=1.8e-20  Score=196.41  Aligned_cols=151  Identities=14%  Similarity=0.079  Sum_probs=118.1

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-----c--cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-----K--EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-----~--~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.+|....+.  ++..|.|+. ++.     .  +..+  .+++|+||+++|+|||+++|           .++
T Consensus       379 ~i~~~~~~~~l~~~l~~d~iiv~D~G~~-~~~~~~~~~~~~~~~~~~~~~gsmG~glpaaiGa~lA-----------~p~  446 (578)
T PLN02573        379 PLRVNVLFKHIQKMLSGDTAVIAETGDS-WFNCQKLKLPEGCGYEFQMQYGSIGWSVGATLGYAQA-----------APD  446 (578)
T ss_pred             ccCHHHHHHHHHHhcCCCCEEEEecccc-hhhHHhccCCCCCeEEeecchhhhhhhhhHHHHHHHh-----------CCC
Confidence            47899999998887663  566777763 321     1  1222  46689999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------cCCcchhhccccCC-----ccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------TSDPQIYKKGPAFG-----MPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------~~~~d~~~~A~a~G-----i~~~~V  293 (361)
                      ++||+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.++.+      ...+||.++|++||     +++.+|
T Consensus       447 r~vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~vV~NN~-~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~~~g~~~~~~V  523 (578)
T PLN02573        447 KRVIACIGDGSFQVT--AQDVSTMIRCGQKSIIFLINNG-GYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTAKV  523 (578)
T ss_pred             CceEEEEeccHHHhH--HHHHHHHHHcCCCCEEEEEeCC-ceeEEEeecccCccccCCCCHHHHHHHhcCcCCceeEEEe
Confidence            999999999999999  8999999999999999999998 444443211      24579999999985     899999


Q ss_pred             eCCCHHHHHHHHHHHHHHHH--cCCCCEEEEEEEec
Q 018048          294 DGMDVLKVREVAKEAIERAR--RGEGPTLVECETYR  327 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar--~~~gP~lIev~t~R  327 (361)
                      +..+  +    +++++++++  +.++|+||||.+.+
T Consensus       524 ~~~~--e----L~~al~~a~~~~~~~p~lieV~v~~  553 (578)
T PLN02573        524 RTEE--E----LIEAIATATGEKKDCLCFIEVIVHK  553 (578)
T ss_pred             cCHH--H----HHHHHHHHHhhCCCCcEEEEEEcCc
Confidence            8765  5    455555555  35889999999853

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=99.82  E-value=4e-20  Score=191.83  Aligned_cols=152  Identities=22%  Similarity=0.266  Sum_probs=119.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.+|....++  +...|.|+...|.       .+.++ ....|+||+++|+|+|+++|           .+++
T Consensus       358 ~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la-----------~p~~  426 (530)
T PRK07092        358 PLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALA-----------QPGR  426 (530)
T ss_pred             CcCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHh-----------CCCC
Confidence            37888999999888764  4556777654432       12333 34469999999999999999           6889


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc----------ccccCCcchhhccccCCccEEEEe
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH----------LRATSDPQIYKKGPAFGMPGFHVD  294 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~----------~~q~~~~d~~~~A~a~Gi~~~~Vd  294 (361)
                      +|||++|||+|+|+  .++|+||+++++|+++||.||+ |++....          ......+||.++|++||+++++|+
T Consensus       427 ~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~  504 (530)
T PRK07092        427 RVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVS  504 (530)
T ss_pred             eEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeC
Confidence            99999999999999  8999999999999999999998 6542110          011245789999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +.+      ++++|++++++.++|+|||+.++
T Consensus       505 ~~~------~l~~al~~a~~~~~p~liev~~d  530 (530)
T PRK07092        505 DAA------ELADALARALAADGPVLVEVEVA  530 (530)
T ss_pred             CHH------HHHHHHHHHHhCCCCEEEEEEcC
Confidence            654      45677777778899999999873

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=99.82  E-value=2.6e-20  Score=194.37  Aligned_cols=153  Identities=24%  Similarity=0.267  Sum_probs=120.9

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc-cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL-LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~-~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.+|....++  ++..|.|+...|.       .+..+ ....|+||+++|+|+|++++           .+++
T Consensus       366 ~~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la-----------~p~~  434 (557)
T PRK08199        366 AVQLGEVMAWLRERLPADAIITNGAGNYATWLHRFFRFRRYRTQLAPTSGSMGYGLPAAIAAKLL-----------FPER  434 (557)
T ss_pred             CcCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHhcCcCCCCeEECCCCccccchHHHHHHHHHh-----------CCCC
Confidence            47888999999887764  4556777654442       12222 35579999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEEE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++....            ....+||.++|++||+++.+|
T Consensus       435 ~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v  511 (557)
T PRK08199        435 TVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNG-MYGTIRMHQEREYPGRVSGTDLTNPDFAALARAYGGHGETV  511 (557)
T ss_pred             cEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-cchHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEe
Confidence            99999999999998  8999999999999999999998 33332211            113479999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      ++.+      +++++++++++.++|+||||.+.+.
T Consensus       512 ~~~~------el~~al~~a~~~~gp~li~v~~~~~  540 (557)
T PRK08199        512 ERTE------DFAPAFERALASGKPALIEIRIDPE  540 (557)
T ss_pred             CCHH------HHHHHHHHHHhCCCCEEEEEEeCHH
Confidence            9765      4566777777788999999999764

>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed

Probab=99.82  E-value=6.4e-20  Score=175.58  Aligned_cols=178  Identities=16%  Similarity=0.152  Sum_probs=120.3

Q ss_pred             CCCHHHHHHHHhcC--cC-C-CcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048          156 GVPARAVMSELFGK--AT-G-CCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF  231 (361)
Q Consensus       156 g~~~~~~~~el~~~--~~-g-~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~  231 (361)
                      ++.+..++..+...  .+ + ++.+|.|.+..+..-.+.....++||+++|+|+|+++|           .|+++||++.
T Consensus        25 ~i~~~~v~~al~e~~~~~~d~ivvsdiGc~~~~~~~~~~~~~~~~~G~alPaAiGaklA-----------~Pdr~VV~i~   93 (277)
T PRK09628         25 GVILKSIIRAIDKLGWNMDDVCVVSGIGCSGRFSSYVNCNTVHTTHGRAVAYATGIKLA-----------NPDKHVIVVS   93 (277)
T ss_pred             chHHHHHHHHHHHhcCCCCCEEEEeCcCHHHHhhccCCCCceeeccccHHHHHHHHHHH-----------CCCCeEEEEE
Confidence            34566666666544  12 2 34556665432221111223346999999999999999           7999999999


Q ss_pred             CCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc--------c--------cCCcchhhccccCCccEE--
Q 018048          232 GDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR--------A--------TSDPQIYKKGPAFGMPGF--  291 (361)
Q Consensus       232 GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~--------q--------~~~~d~~~~A~a~Gi~~~--  291 (361)
                      |||+|+ +|  .+++.+|+++++||++||.||+ |++...++.        +        ..+.|+.++|++||++++  
T Consensus        94 GDG~f~~~g--~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA~a~G~~~va~  171 (277)
T PRK09628         94 GDGDGLAIG--GNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLATAAGASFVAR  171 (277)
T ss_pred             CchHHHHhh--HHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHHHHCCCceEEE
Confidence            999997 46  7889999999999999999998 554210000        0        123478999999999986  


Q ss_pred             -EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHHhhhc
Q 018048          292 -HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVLFIFC  354 (361)
Q Consensus       292 -~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~~~~~  354 (361)
                       +|+  ++.++    +.+++++++.+||+||||.+.-...  ..-...++++.+.-.|......
T Consensus       172 ~~v~--~~~el----~~al~~Al~~~Gp~lIeV~~~c~~~--~~~~~~~~~~~~~~~~~~~~~~  227 (277)
T PRK09628        172 ESVI--DPQKL----EKLLVKGFSHKGFSFFDVFSNCHIN--LGRKNKMGEAVQMLKWIESRTV  227 (277)
T ss_pred             EccC--CHHHH----HHHHHHHHhCCCCEEEEEcCCCCCC--CCcccccccHHHHHHHHHHhhc
Confidence             565  44454    5566666678999999997744311  1112346677788888877643

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=99.82  E-value=2.6e-20  Score=194.25  Aligned_cols=153  Identities=23%  Similarity=0.427  Sum_probs=120.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....++  ++..|.|.+..|.       .+..+  .+++|+||+++|+|+|+++|           .++
T Consensus       362 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l~aaiGa~la-----------~~~  430 (558)
T TIGR00118       362 GIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGLPAAIGAKVA-----------KPE  430 (558)
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchhhHHHhhhhh-----------CCC
Confidence            47888999999988875  4556777654332       23344  46679999999999999999           688


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc-------------cccCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-------------RATSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-------------~q~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++||+++|||+|+|+  .++|.||+++++|+++||.||+ +++....             .....+||.++|++||++++
T Consensus       431 ~~vv~~~GDG~f~~~--~~eL~ta~~~~l~~~~vv~NN~-~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~  507 (558)
T TIGR00118       431 STVICITGDGSFQMN--LQELSTAVQYDIPVKILILNNR-YLGMVRQWQELFYEERYSHTHMGSLPDFVKLAEAYGIKGI  507 (558)
T ss_pred             CcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHhcCCceeeccCCCCCCHHHHHHHCCCeEE
Confidence            999999999999998  8999999999999999999998 3433221             11124799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +|+..+  +    +++|++++.+.++|+||||.+.+.
T Consensus       508 ~v~~~~--~----l~~al~~a~~~~~p~liev~~~~~  538 (558)
T TIGR00118       508 RIEKPE--E----LDEKLKEALSSNEPVLLDVVVDKP  538 (558)
T ss_pred             EECCHH--H----HHHHHHHHHhCCCCEEEEEEeCCc
Confidence            998765  4    455666666678999999999753

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=99.82  E-value=2.9e-20  Score=195.09  Aligned_cols=152  Identities=24%  Similarity=0.348  Sum_probs=118.8

Q ss_pred             CCCHHHHHHHHhcCcCC-------CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048          156 GVPARAVMSELFGKATG-------CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLK  219 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g-------~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~  219 (361)
                      .+++..++.++....++       ++..|.|++..|.       .+.++  .+++|+||+++|+|+|+++|         
T Consensus       364 ~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGa~la---------  434 (586)
T PRK06276        364 PIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGGLGTMGFGFPAAIGAKVA---------  434 (586)
T ss_pred             CcCHHHHHHHHHHhccccCCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCccccccchhHHHhhhhh---------
Confidence            36788888888877654       4556777654441       23344  35679999999999999999         


Q ss_pred             hcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-----------c-c-CCcchhhccccC
Q 018048          220 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-----------A-T-SDPQIYKKGPAF  286 (361)
Q Consensus       220 ~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-----------q-~-~~~d~~~~A~a~  286 (361)
                        .++++||+++|||+|+|+  .++|.||+++++|+++||.||+ ++++....           . . ..+||.++|++|
T Consensus       435 --~p~~~Vv~i~GDGsf~m~--~~eL~Ta~~~~lpv~~vV~NN~-~~g~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~  509 (586)
T PRK06276        435 --KPDANVIAITGDGGFLMN--SQELATIAEYDIPVVICIFDNR-TLGMVYQWQNLYYGKRQSEVHLGETPDFVKLAESY  509 (586)
T ss_pred             --cCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCC-chHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC
Confidence              688999999999999999  8999999999999999999998 44332110           0 1 347999999999


Q ss_pred             CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       287 Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      |+++++|+..+  +    ++.|++++.+.++|+||||.+.+
T Consensus       510 G~~~~~v~~~~--e----l~~al~~a~~~~~p~lIeV~i~~  544 (586)
T PRK06276        510 GVKADRVEKPD--E----IKEALKEAIKSGEPYLLDIIIDP  544 (586)
T ss_pred             CCeEEEECCHH--H----HHHHHHHHHhCCCCEEEEEEecc
Confidence            99999998665  4    45566666677899999999964

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=99.82  E-value=5.1e-20  Score=192.01  Aligned_cols=153  Identities=20%  Similarity=0.207  Sum_probs=115.7

Q ss_pred             CCCHHHHHHHHhcCcC---C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcC
Q 018048          156 GVPARAVMSELFGKAT---G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEAD  222 (361)
Q Consensus       156 g~~~~~~~~el~~~~~---g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~  222 (361)
                      .+++..++.++....+   + ++..++|+...|.       .+.++  .+++|+||+++|+|+|+++|            
T Consensus       365 ~l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lpaaiGaala------------  432 (554)
T TIGR03254       365 PMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGVMGIGMGYAIAAAVE------------  432 (554)
T ss_pred             CcCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHhcccCCCCcEeeCCCCCcCCchHHHHHHHHhc------------
Confidence            5788889888887764   2 3455556443321       22333  45679999999999999998            


Q ss_pred             CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc--------cc-cCCcchhhccccCCccEEE
Q 018048          223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL--------RA-TSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~--------~q-~~~~d~~~~A~a~Gi~~~~  292 (361)
                      ++++||+++|||+|+|+  .+||.||+++++|+++||.||+ |.......        .. ...+||.++|++||+++++
T Consensus       433 ~~~~vv~i~GDGsf~m~--~~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df~~la~a~G~~~~~  510 (554)
T TIGR03254       433 TGKPVVALEGDSAFGFS--GMEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARYDKMMKAFGGVGYN  510 (554)
T ss_pred             CCCcEEEEEcCchhccc--HHHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCHHHHHHHCCCeEEE
Confidence            47899999999999999  8999999999999999999997 31111000        01 1457999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      |+..+  +    ++.|++++++.++|+||||.+.+.
T Consensus       511 v~~~~--e----l~~al~~a~~~~~p~lIev~id~~  540 (554)
T TIGR03254       511 VTTPD--E----LKAALNEALASGKPTLINAVIDPS  540 (554)
T ss_pred             eCCHH--H----HHHHHHHHHhCCCCEEEEEEECCC
Confidence            98655  5    455666666778999999999654

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>PRK12753 transketolase; Reviewed

Probab=99.81  E-value=1.2e-18  Score=184.75  Aligned_cols=142  Identities=23%  Similarity=0.258  Sum_probs=120.1

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++...+|++|.+++.|+|+|+|.|+++.......   .+.+|+|++|||++++|.++|++++|+.++|| +|+||+||+|
T Consensus       108 gve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~  187 (663)
T PRK12753        108 GVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGI  187 (663)
T ss_pred             CcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCC
Confidence            4456789999999999999999998753322111   26799999999999999999999999999998 8999999999


Q ss_pred             ccccccccccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                      +++.+..... ..++.+++++|||+++. |||+|+.++++++++|.+   ..++|++|+++|++..|++..
T Consensus       188 ~i~~~~~~~~-~~~~~~~f~a~Gw~~~~~vDGhD~~~i~~a~~~a~~---~~~~P~~I~~~T~kG~G~~~~  254 (663)
T PRK12753        188 SIDGETEGWF-TDDTAKRFEAYHWHVIHEIDGHDPQAIKEAILEAQS---VKDKPSLIICRTIIGFGSPNK  254 (663)
T ss_pred             cCCCChhhhc-ChhHHHHHHHcCCeEEceeCCCCHHHHHHHHHHHHH---CCCCeEEEEEEEeecCCCCcc
Confidence            9988776544 56899999999999995 999999998887776643   357899999999999999853

>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.81  E-value=4.5e-19  Score=185.97  Aligned_cols=135  Identities=23%  Similarity=0.239  Sum_probs=112.6

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS  269 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~  269 (361)
                      +...+|++|+++|+|+|+|+|.++++      +++++|+|++|||++++|.++|+|++|+++++|+++|+.||+|+++.+
T Consensus       112 ~~~~~G~lG~gl~~AvG~A~a~~~~~------~~~~~v~~i~GDG~l~eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~  185 (580)
T PRK05444        112 DTFGAGHSSTSISAALGMAKARDLKG------GEDRKVVAVIGDGALTGGMAFEALNNAGDLKSDLIVILNDNEMSISPN  185 (580)
T ss_pred             eeECCChHHHHHHHHHHHHHHHHhhC------CCCCeEEEEEcccccccCHHHHHHHHHHhhCCCEEEEEECCCCcCCCc
Confidence            34567999999999999999987762      367899999999999999999999999999999999999999987765


Q ss_pred             cccc---cCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          270 HLRA---TSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       270 ~~~q---~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                      ....   ....++.+++++||++++ .|||+|+.++++++    +++++.++|++|++.|.+..|.+..
T Consensus       186 ~~~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~al----~~a~~~~~P~lI~~~T~kg~G~~~~  250 (580)
T PRK05444        186 VGALSNYLARLRSSTLFEELGFNYIGPIDGHDLDALIETL----KNAKDLKGPVLLHVVTKKGKGYAPA  250 (580)
T ss_pred             chhhhhhhccccHHHHHHHcCCCeeeeeCCCCHHHHHHHH----HHHHhCCCCEEEEEEecCCcCCChh
Confidence            5332   123456788999999999 59999998876544    4556678999999999999987643

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=99.81  E-value=1.4e-19  Score=189.40  Aligned_cols=158  Identities=21%  Similarity=0.196  Sum_probs=121.1

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcc-cccc--ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSM-HMFS--KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL  228 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~-h~~~--~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv  228 (361)
                      .+++.+++.+|...+++  ++..+.+.. +++.  .+.++  .+++|+||+++|+|+|+++|           .|+++||
T Consensus       384 ~i~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~gsmG~~lp~aiGa~la-----------~p~~~vv  452 (569)
T PRK08327        384 PITPAYLSYCLGEVADEYDAIVTEYPFVPRQARLNKPGSYFGDGSAGGLGWALGAALGAKLA-----------TPDRLVI  452 (569)
T ss_pred             CcCHHHHHHHHHHhcCccceEEeccHHHHHhcCccCCCCeeeCCCCCCCCcchHHHHHHhhc-----------CCCCeEE
Confidence            47899999999888774  333333321 2222  23334  45689999999999999999           7899999


Q ss_pred             EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc-----------------cccc-CCcchhhccccCCcc
Q 018048          229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-----------------LRAT-SDPQIYKKGPAFGMP  289 (361)
Q Consensus       229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~-----------------~~q~-~~~d~~~~A~a~Gi~  289 (361)
                      |++|||+|+|+...++|+||+++++|+++||.||+ |++....                 ..+. ..+||.++|++||++
T Consensus       453 ~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~  532 (569)
T PRK08327        453 ATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPEGYAARKGTFPGTDFDPRPDFAKIAEAFGGY  532 (569)
T ss_pred             EEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcccccccccccccccCCCCCCHHHHHHhCCCC
Confidence            99999999998434569999999999999999996 5542100                 0011 457999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       290 ~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +.+|+  ++.++..++++|++.+++++||+||||.+.
T Consensus       533 ~~~v~--~~~el~~al~~a~~~~~~~~gp~liev~v~  567 (569)
T PRK08327        533 GERVE--DPEELKGALRRALAAVRKGRRSAVLDVIVD  567 (569)
T ss_pred             ceEeC--CHHHHHHHHHHHHHHHhcCCCcEEEEEEcc
Confidence            99998  556888888888877776789999999874

>PRK07064 hypothetical protein; Provisional

Probab=99.81  E-value=8e-20  Score=189.97  Aligned_cols=147  Identities=20%  Similarity=0.246  Sum_probs=112.8

Q ss_pred             HHHHHHHhcCcCC--CcccCCCcc-cccc-------cccc-ccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEE
Q 018048          160 RAVMSELFGKATG--CCRGQGGSM-HMFS-------KEHN-LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTL  228 (361)
Q Consensus       160 ~~~~~el~~~~~g--~~~gd~G~~-h~~~-------~~~~-~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv  228 (361)
                      ..++.++....++  ++..|.|.. ..|.       .+.. +.+..|+||+++|+|+|+++|           .++++||
T Consensus       359 ~~~~~~l~~~l~~~~ii~~d~~~~~~~~~~~~~~~~~p~~~~~~~~g~mG~~lpaAiGa~lA-----------~p~~~vv  427 (544)
T PRK07064        359 AKLVDALRAALPRDGNWVRDVTISNSTWGNRLLPIFEPRANVHALGGGIGQGLAMAIGAALA-----------GPGRKTV  427 (544)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCccchHHHHHHhcCccCCCceeccCCCccccccchhhhhhhh-----------CcCCcEE
Confidence            3578888877664  445565532 2221       1222 334448999999999999999           7899999


Q ss_pred             EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEEEeCC
Q 018048          229 AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHVDGM  296 (361)
Q Consensus       229 ~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~Vdg~  296 (361)
                      +++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..            ....+||.++|++||+++.+|+..
T Consensus       428 ~i~GDGsf~m~--~~eL~Ta~~~~lpv~ivV~NN~-~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~  504 (544)
T PRK07064        428 GLVGDGGLMLN--LGELATAVQENANMVIVLMNDG-GYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPHWRVTSA  504 (544)
T ss_pred             EEEcchHhhhh--HHHHHHHHHhCCCeEEEEEeCC-hhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeEEEeCCH
Confidence            99999999998  8999999999999999999998 44433211            123579999999999999999876


Q ss_pred             CHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          297 DVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       297 D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +  +    ++.+++++++.++|+||||.++
T Consensus       505 ~--e----L~~al~~a~~~~~p~lIeV~~~  528 (544)
T PRK07064        505 D--D----FEAVLREALAKEGPVLVEVDML  528 (544)
T ss_pred             H--H----HHHHHHHHHcCCCCEEEEEEcc
Confidence            5  4    5566666667789999999986

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=99.80  E-value=6.1e-20  Score=190.83  Aligned_cols=151  Identities=18%  Similarity=0.166  Sum_probs=115.7

Q ss_pred             CCCHHHHHHHHhcCcCC----CcccCCCccccccc---cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048          156 GVPARAVMSELFGKATG----CCRGQGGSMHMFSK---EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g----~~~gd~G~~h~~~~---~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~  226 (361)
                      .++|.+++.++...++.    +...|.|..+++..   +.++  ++.+|+||+++|+|+|+++|           .+ ++
T Consensus       355 ~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~lA-----------~~-~r  422 (535)
T TIGR03394       355 PIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQCT-----------SG-KR  422 (535)
T ss_pred             CcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHhcCCCcEECcCccchhhhHHHHHHHHHhC-----------CC-CC
Confidence            47888899988887653    35678787544431   2333  45789999999999999999           34 44


Q ss_pred             EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-------cCCcchhhccccCCccEEEEeCCCHH
Q 018048          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-------TSDPQIYKKGPAFGMPGFHVDGMDVL  299 (361)
Q Consensus       227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-------~~~~d~~~~A~a~Gi~~~~Vdg~D~~  299 (361)
                      +|+++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|       ...+||+++|++||+++.+|+..+  
T Consensus       423 ~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~-~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~--  497 (535)
T TIGR03394       423 ILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNA-SWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVRTRA--  497 (535)
T ss_pred             eEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECC-ccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeCCHH--
Confidence            5889999999999  9999999999999999999998 455443222       235799999999999999998765  


Q ss_pred             HHHHHHHHHHHHHHcC-CCCEEEEEEEec
Q 018048          300 KVREVAKEAIERARRG-EGPTLVECETYR  327 (361)
Q Consensus       300 ~v~~al~~Al~~ar~~-~gP~lIev~t~R  327 (361)
                      +    ++.|++++.+. ++|+||||.+.+
T Consensus       498 e----L~~al~~a~~~~~~p~lIev~i~~  522 (535)
T TIGR03394       498 E----LAAALDKAFATRGRFQLIEAMLPR  522 (535)
T ss_pred             H----HHHHHHHHHhcCCCeEEEEEECCc
Confidence            4    45566666554 458999998743

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=99.80  E-value=6.4e-20  Score=179.74  Aligned_cols=154  Identities=22%  Similarity=0.314  Sum_probs=131.3

Q ss_pred             CCCHHHHHHHHhcCcCC-----CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048          156 GVPARAVMSELFGKATG-----CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEA  221 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g-----~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~  221 (361)
                      -+.|+.++.+|.....+     ++....|+++||.       +++.+  +++.|+||+++|+|||+..|           
T Consensus       471 ~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqfy~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA-----------  539 (675)
T KOG4166|consen  471 AIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQFYNWKKPRQWLTSGGLGTMGFGLPAAIGASVA-----------  539 (675)
T ss_pred             ccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHHhcccCccceeecCCccccccCcchhhccccc-----------
Confidence            37899999999887765     3455678888885       35555  68999999999999999999           


Q ss_pred             CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc------------CCcchhhccccCCcc
Q 018048          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT------------SDPQIYKKGPAFGMP  289 (361)
Q Consensus       222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~------------~~~d~~~~A~a~Gi~  289 (361)
                      .|+.+||-+-||++|.|.  .+||.|+.+.++||.+++.||+ ..++..+.|.            .+|++.++|.|+|++
T Consensus       540 ~P~~iViDIDGDaSF~Mt--~~ELat~rq~~~PVKiLiLNNe-eqGMVtQWq~lFYe~rysHThQ~nPnf~klA~AmGik  616 (675)
T KOG4166|consen  540 NPDAIVIDIDGDASFIMT--VQELATIRQENLPVKILILNNE-EQGMVTQWQDLFYEARYSHTHQENPNFLKLAAAMGIK  616 (675)
T ss_pred             CcccEEEeccCCceeeee--hHhhhhhhhcCCceEEEEecch-hhhhHHHHHHHHHHhhhccccccCccHHHHHHhcCCc
Confidence            899999999999999999  9999999999999999999998 6676655431            479999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       290 ~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +.+|...+      .++++++..+..+||+|+||.+....
T Consensus       617 alRV~K~e------dL~~k~keflsTkGPvLleV~v~~ke  650 (675)
T KOG4166|consen  617 ALRVTKKE------DLREKIKEFLSTKGPVLLEVIVPHKE  650 (675)
T ss_pred             hheeehHH------HHHHHHHHHhCCCCCeEEEEEccCcc
Confidence            99998765      56777778889999999999986543

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=99.80  E-value=1.8e-19  Score=188.59  Aligned_cols=153  Identities=20%  Similarity=0.210  Sum_probs=114.9

Q ss_pred             CCCHHHHHHHHhcCcC---C-CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcC
Q 018048          156 GVPARAVMSELFGKAT---G-CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEAD  222 (361)
Q Consensus       156 g~~~~~~~~el~~~~~---g-~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~  222 (361)
                      .+++..++.++....+   + ++..++|....+.       .+.++  .+++|+||+++|+|+|+++|            
T Consensus       372 ~l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gsmG~glpaaiGa~la------------  439 (569)
T PRK09259        372 PMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGVMGIGMGYAIAAAVE------------  439 (569)
T ss_pred             CcCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCccccccHHHHHHHHhc------------
Confidence            4678888888777653   2 3444555432221       22232  45679999999999999998            


Q ss_pred             CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc--cccc------c---cc-cCCcchhhccccCCccE
Q 018048          223 CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI--GMSH------L---RA-TSDPQIYKKGPAFGMPG  290 (361)
Q Consensus       223 ~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i--s~~~------~---~q-~~~~d~~~~A~a~Gi~~  290 (361)
                      ++++||+++|||+|+|+  .+||.||+++++|+++||.||+ ++  ....      .   .. ...+||.++|++||+++
T Consensus       440 ~~~~vv~i~GDG~f~m~--~~EL~Ta~r~~lpi~~vV~NN~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~  516 (569)
T PRK09259        440 TGKPVVAIEGDSAFGFS--GMEVETICRYNLPVTVVIFNNG-GIYRGDDVNLSGAGDPSPTVLVHHARYDKMMEAFGGVG  516 (569)
T ss_pred             CCCcEEEEecCcccccc--HHHHHHHHHcCCCEEEEEEeCh-hHHHHHHHHhhcCCCccccccCCCCCHHHHHHHCCCeE
Confidence            47889999999999999  8999999999999999999998 33  1110      0   01 13679999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       291 ~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      ++|+..+  +    +++|++++++.++|+||||.+.+..
T Consensus       517 ~~v~~~~--e----l~~al~~a~~~~~p~lIev~id~~~  549 (569)
T PRK09259        517 YNVTTPD--E----LRHALTEAIASGKPTLINVVIDPAA  549 (569)
T ss_pred             EEECCHH--H----HHHHHHHHHhCCCCEEEEEEECCCC
Confidence            9998765  4    5566666667789999999997543

>PLN02790 transketolase

Probab=99.80  E-value=5.7e-19  Score=187.25  Aligned_cols=141  Identities=25%  Similarity=0.300  Sum_probs=116.4

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhc---CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~---~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++...+|++|.+++.|+|+|+|.|+.+......   -.+..|+|++|||++++|.++|+|++|+.++|| +|+||+||+|
T Consensus        99 gi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~  178 (654)
T PLN02790         99 GIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHI  178 (654)
T ss_pred             CccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCc
Confidence            455678999999999999999998753221110   026789999999999999999999999999998 8999999999


Q ss_pred             ccccccccccCCcchhhccccCCccEEEEeC--CCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCCC
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDG--MDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg--~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~~  334 (361)
                      +++.+...+. ..++.+++++||++++.||+  +|+.+++++++.    +++ .++|++|+++|++..|.+..
T Consensus       179 ~i~~~~~~~~-~~~~~~~f~a~G~~~~~vdgg~hd~~~l~~a~~~----a~~~~~~P~lI~~~T~kG~G~~~~  246 (654)
T PLN02790        179 SIDGDTEIAF-TEDVDKRYEALGWHTIWVKNGNTDYDEIRAAIKE----AKAVTDKPTLIKVTTTIGYGSPNK  246 (654)
T ss_pred             cccCCccccc-chhHHHHHHHcCCeEEEECCCCCCHHHHHHHHHH----HHhcCCCeEEEEEEEeecCCCccc
Confidence            9988766443 56788999999999999988  798877665554    444 68999999999999998743

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.80  E-value=1.4e-18  Score=183.17  Aligned_cols=198  Identities=23%  Similarity=0.287  Sum_probs=138.1

Q ss_pred             eeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccc-cC
Q 018048          117 GFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNL-LG  192 (361)
Q Consensus       117 g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~-~~  192 (361)
                      |+..++.|---+.+++...++ +.| +|+. -|....+.+..|. . +-+..+... .    +-.|  |........ ..
T Consensus        38 GH~g~~ls~vel~~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~G~-~-~~l~~~r~~-g----~l~g--~p~~~e~~~d~~  108 (617)
T TIGR00204        38 GHLASGLGTVELTVALHYVFNTPKDQFIWDVGHQAYPHKLLTGR-R-EKFSTLRQK-K----GLHG--FPKRSESEYDVF  108 (617)
T ss_pred             CCcCcchhHHHHHHHHHhhCCCCCCcEEEecchHHHHHHHHhCc-H-HHhcchhhc-C----CcCC--CCcCCCCCCCcc
Confidence            666667776656556665566 455 5565 3555555555664 1 112222111 1    1112  211111111 24


Q ss_pred             CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc
Q 018048          193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR  272 (361)
Q Consensus       193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~  272 (361)
                      ..|++|.++++|+|+|+|.+++       +.+.+|+|++|||++++|.+||+|+.|+.++||+|+||+||+|+++.+...
T Consensus       109 ~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~  181 (617)
T TIGR00204       109 SAGHSSTSISAGLGIAVAAEKK-------GADRKTVCVIGDGAITAGMAFEALNHAGDLKTDMIVILNDNEMSISENVGA  181 (617)
T ss_pred             CCCchHhHHHHHHHHHHHHHhh-------CCCCEEEEEECCcccccccHHHHHHHHHhcCCCEEEEEECCCcccCCCchH
Confidence            5789999999999999999887       568899999999999999999999999999999999999999998876532


Q ss_pred             cc-----------------------C-Ccc----hhhc--------------cccCCccEE-EEeCCCHHHHHHHHHHHH
Q 018048          273 AT-----------------------S-DPQ----IYKK--------------GPAFGMPGF-HVDGMDVLKVREVAKEAI  309 (361)
Q Consensus       273 q~-----------------------~-~~d----~~~~--------------A~a~Gi~~~-~Vdg~D~~~v~~al~~Al  309 (361)
                      +.                       . .+.    +.++              .++||+.++ .|||+|+.++.+++    
T Consensus       182 ~~~~l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~f~~~G~~~~~~vDGhd~~~l~~al----  257 (617)
T TIGR00204       182 LSNHLAQLRSGSLYQSLRDGLKKIFSKLPPIKNYLAKRTEESMKGLVVPGTFFEELGFNYIGPVDGHDLLELIETL----  257 (617)
T ss_pred             HHHHHHHhhccchHHHHHHHHHHHHhcCcchhHHHHHHHHHhhhhccCccchHHHcCCcEEcccCCCCHHHHHHHH----
Confidence            11                       0 111    3232              778999999 89999999876655    


Q ss_pred             HHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          310 ERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       310 ~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                      +.+++.++|++|+++|.+..|.+..
T Consensus       258 ~~ak~~~~P~~i~~~T~KGkG~~~~  282 (617)
T TIGR00204       258 KNAKKLKGPVFLHIQTKKGKGYKPA  282 (617)
T ss_pred             HHHhcCCCCEEEEEEecCCCCCchh
Confidence            4566778899999999999986654

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated

Probab=99.80  E-value=6e-19  Score=170.66  Aligned_cols=142  Identities=18%  Similarity=0.113  Sum_probs=104.6

Q ss_pred             CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc
Q 018048          193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH  270 (361)
Q Consensus       193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~  270 (361)
                      ..++||+++|+|+|+++|           .|++.||++.|||++ ++|  .++|.+|+++++|+++||.||+ |++...+
T Consensus        68 ~~g~mG~alpaAiGaklA-----------~pd~~VV~i~GDG~~~~mg--~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ  134 (301)
T PRK05778         68 LHTLHGRAIAFATGAKLA-----------NPDLEVIVVGGDGDLASIG--GGHFIHAGRRNIDITVIVENNGIYGLTKGQ  134 (301)
T ss_pred             cchhhccHHHHHHHHHHH-----------CCCCcEEEEeCccHHHhcc--HHHHHHHHHHCCCcEEEEEeCchhhcccCc
Confidence            348999999999999999           799999999999997 588  9999999999999999999998 5442211


Q ss_pred             cc----------------ccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC
Q 018048          271 LR----------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (361)
Q Consensus       271 ~~----------------q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (361)
                      ..                ....+|+.++|+++|+.++ ++...++.++    +++++++++.+||+||||.+.=...  .
T Consensus       135 ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA~a~G~~~va~~~v~~~~eL----~~ai~~A~~~~GpalIeV~~~C~~~--~  208 (301)
T PRK05778        135 ASPTTPEGSKTKTAPYGNIEPPIDPCALALAAGATFVARSFAGDVKQL----VELIKKAISHKGFAFIDVLSPCVTF--N  208 (301)
T ss_pred             ccCCcCCCcccccccCCCcCCCCCHHHHHHHCCCCEEEEeccCCHHHH----HHHHHHHHhCCCCEEEEEcCCCCCC--C
Confidence            00                0124699999999999987 3344455565    4455555667899999987632111  1


Q ss_pred             CCCCCCCCHHHHHhHHHhhh
Q 018048          334 ADPDELRDPGEHLVLVLFIF  353 (361)
Q Consensus       334 ~Dp~~yR~~~e~~~~~~~~~  353 (361)
                      .-.+..+++.++-+|..+..
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~  228 (301)
T PRK05778        209 GRNTSTKSPAYMREYYKKRV  228 (301)
T ss_pred             CcCCcccCHHHHHHHHHhhc
Confidence            11334567777777766554

>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]

Probab=99.79  E-value=7.3e-18  Score=153.77  Aligned_cols=128  Identities=27%  Similarity=0.412  Sum_probs=109.6

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG  267 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is  267 (361)
                      ++-..+|++|+++++|+|.|++.|++       +.+..|++++|||..++|.+||++.+|++|+|. +|.||.-|...++
T Consensus       113 gve~stGSLGqGLsvavGmAlg~kl~-------~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Qld  185 (243)
T COG3959         113 GVEVSTGSLGQGLSVAVGMALGAKLK-------GSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQLD  185 (243)
T ss_pred             ceeecCCcccccchHHHHHHHHHhhc-------CCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCcccC
Confidence            34456899999999999999999988       568899999999999999999999999999998 8888887765776


Q ss_pred             cccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEec
Q 018048          268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR  327 (361)
Q Consensus       268 ~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R  327 (361)
                      ..+..-.+..++.++-+||||++++|||+|++++++    |++.++.. ++|.+|-+.|.+
T Consensus       186 G~t~~i~~~~pL~~k~eAFGw~V~evdG~d~~~i~~----a~~~~~~~~~rP~~IIa~Tvk  242 (243)
T COG3959         186 GETEEIMPKEPLADKWEAFGWEVIEVDGHDIEEIVE----ALEKAKGSKGRPTVIIAKTVK  242 (243)
T ss_pred             CchhhccCcchhHHHHHhcCceEEEEcCcCHHHHHH----HHHhhhccCCCCeEEEEeccc
Confidence            666666677789999999999999999999988765    55555553 399999998865

>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways

Probab=99.79  E-value=2.2e-19  Score=168.52  Aligned_cols=160  Identities=14%  Similarity=0.148  Sum_probs=110.5

Q ss_pred             CCCCHHHHHHHHhcCcC--C--CcccCCCccccccc-------cccc----cCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048          155 KGVPARAVMSELFGKAT--G--CCRGQGGSMHMFSK-------EHNL----LGGFAFIGEGIPVATGAAFTSKYRREVLK  219 (361)
Q Consensus       155 ~g~~~~~~~~el~~~~~--g--~~~gd~G~~h~~~~-------~~~~----~~~~g~mG~~lP~AiGaA~A~k~~~~~~~  219 (361)
                      -|..-.-++.++...++  +  ++..|.|.+.+|..       +.++    ..+.++||+++|+|||+++|.-..     
T Consensus         9 ~gc~~~~~~~~l~~~l~~p~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~g~mG~GlpaAiGA~~a~~~~-----   83 (237)
T cd02018           9 AGCGEVTAVRVVLAALPAPEDTVIANSTGCSSVYASTAPFNSWAVPWVNSLFEDANAVASGLKRGLKARFPKDRE-----   83 (237)
T ss_pred             cCCCcHHHHHHHHHHhCCCCCEEEEeCCCccceecccCcCcccCCCeeeccccCHHHHHHHHHHHHHhhcccccc-----
Confidence            34444445555554443  2  34556665555431       1121    224599999999999999882111     


Q ss_pred             hcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCCccccccc-cc-----------------ccCCcchh
Q 018048          220 EADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSH-LR-----------------ATSDPQIY  280 (361)
Q Consensus       220 ~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~-~~-----------------q~~~~d~~  280 (361)
                       ..++++|||++|||++. ||  .++|.++.++++||++||.||+ .+++.. +.                 ....+|++
T Consensus        84 -~~p~~~Vv~i~GDG~~~~~g--~~~l~ta~~~~l~i~ivVlNN~-~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~  159 (237)
T cd02018          84 -LDKKKDVVVIGGDGATYDIG--FGALSHSLFRGEDITVIVLDNE-VYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLV  159 (237)
T ss_pred             -cCCCCcEEEEeCchHHHhcc--HHHHHHHHHcCCCeEEEEECCc-cccCCCCCCCCCCcCCCcccccCCCCcCCCCCHH
Confidence             13689999999999997 78  8999999999999999999998 333322 11                 11347999


Q ss_pred             hccccCCccEEE---EeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCC
Q 018048          281 KKGPAFGMPGFH---VDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFR  329 (361)
Q Consensus       281 ~~A~a~Gi~~~~---Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~  329 (361)
                      ++|++||+++++   |+.  +.+    ++.|++++++ .+||+||||.+.-..
T Consensus       160 ~iA~a~G~~~~~~~~v~~--~~~----l~~al~~al~~~~GP~lI~v~i~c~~  206 (237)
T cd02018         160 LIAATHGCVYVARLSPAL--KKH----FLKVVKEAISRTDGPTFIHAYTPCIT  206 (237)
T ss_pred             HHHHHCCCCEEEEEccCC--HHH----HHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence            999999999986   554  445    4556666666 899999999975433

Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.

>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated

Probab=99.78  E-value=2.7e-19  Score=187.02  Aligned_cols=152  Identities=18%  Similarity=0.106  Sum_probs=114.4

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCccccc-----cc--cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMF-----SK--EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~-----~~--~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.+|....++  ++..+.|..+.+     ..  +.++  ..++++||+++|+|+|+++|            ++
T Consensus       375 ~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~lpaaiGaala------------~~  442 (568)
T PRK07449        375 TFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAFGQLPDGYPVYSNRGASGIDGLLSTAAGVARA------------SA  442 (568)
T ss_pred             CccHHHHHHHHHHhCCCCCeEEEECcHHHHHHHHccCcCCCceEEecCCccchhhHHHHHHHHHhc------------CC
Confidence            36778888888887764  344555554322     11  1222  34568899999999999998            57


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccc-ccccccc-----------cCCcchhhccccCCccEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAI-GMSHLRA-----------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~i-s~~~~~q-----------~~~~d~~~~A~a~Gi~~~  291 (361)
                      ++|||++|||+|+|+  .+||.|++++++|+++||.||+ |++ ......|           ...+||+++|++||++++
T Consensus       443 ~~vv~i~GDGsf~~~--~~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~  520 (568)
T PRK07449        443 KPTVALIGDLSFLHD--LNGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERFFGTPHGVDFAHAAAMYGLEYH  520 (568)
T ss_pred             CCEEEEechHHhhcC--cHHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchhhHhhcCCCCCCHHHHHHHcCCCcc
Confidence            889999999999998  8999999999999999999998 442 2221111           135799999999999999


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          292 HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      +|+..+  +    +++|++++.+.++|+||||.+.+
T Consensus       521 ~V~~~~--e----L~~al~~a~~~~~p~lIev~id~  550 (568)
T PRK07449        521 RPETWA--E----LEEALADALPTPGLTVIEVKTNR  550 (568)
T ss_pred             CCCCHH--H----HHHHHHHHhcCCCCEEEEEeCCh
Confidence            998665  4    56666666677899999998843

>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E

Probab=99.78  E-value=4.4e-17  Score=161.06  Aligned_cols=160  Identities=21%  Similarity=0.114  Sum_probs=127.5

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCccccc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGM  268 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~  268 (361)
                      +...+|++|.+++.|+|.|+|.|+....+...+.+..|+|++|||.+++|.+||++++|+.++|. +|+||.+|++.+..
T Consensus       113 ve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLivIvD~N~~qidG  192 (386)
T cd02017         113 WEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIFVVNCNLQRLDG  192 (386)
T ss_pred             eeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEEEEECCCCccCC
Confidence            45578999999999999999998754332222457889999999999999999999999999996 99999999887776


Q ss_pred             ccccc-cCCcchhhccccCCccEEEEe-----------------------------------------------------
Q 018048          269 SHLRA-TSDPQIYKKGPAFGMPGFHVD-----------------------------------------------------  294 (361)
Q Consensus       269 ~~~~q-~~~~d~~~~A~a~Gi~~~~Vd-----------------------------------------------------  294 (361)
                      +.... ....++.++.++|||.++.|+                                                     
T Consensus       193 ~t~~v~~~~e~l~~kf~AfGW~vi~V~~g~~~~~~f~~~gg~~l~~~~~~~~~~~~~~l~~~~~~~~r~~l~~~~~~~~~  272 (386)
T cd02017         193 PVRGNGKIIQELEGIFRGAGWNVIKVIWGSKWDELLAKDGGGALRQRMEETVDGDYQTLKAKDGAYVREHFFGKYPELKA  272 (386)
T ss_pred             cccccccCchhHHHHHHhcCCEEEEEecCCcchhhhccCcchHHHHHHHhcccHHHHHHhhcchHHHHHHhccccHHHHH
Confidence            65543 345789999999999999998                                                     


Q ss_pred             ----------------CCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCC-C--CCC----CCCCHHHHHhHHH
Q 018048          295 ----------------GMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSL-A--DPD----ELRDPGEHLVLVL  350 (361)
Q Consensus       295 ----------------g~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~-~--Dp~----~yR~~~e~~~~~~  350 (361)
                                      |+|+.++++++.+    +.. .++|++|.+.|....|.+. .  +..    ..-+++|++....
T Consensus       273 ~~~~~~d~~~~~~~~gGhD~~~i~~A~~~----a~~~~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~  348 (386)
T cd02017         273 LVTDLSDEDLWALNRGGHDPRKVYAAYKK----AVEHKGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRD  348 (386)
T ss_pred             HhhcccHHhhhhhccCCCCHHHHHHHHHH----HHhCCCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHH
Confidence                            9998887665554    443 4689999999999999873 2  222    2347888888776


Q ss_pred             hhh
Q 018048          351 FIF  353 (361)
Q Consensus       351 ~~~  353 (361)
                      ...
T Consensus       349 ~lg  351 (386)
T cd02017         349 RFG  351 (386)
T ss_pred             HcC
Confidence            654

coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=99.76  E-value=5e-18  Score=168.24  Aligned_cols=167  Identities=17%  Similarity=0.240  Sum_probs=118.7

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCccc--ccc---c-----cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMH--MFS---K-----EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h--~~~---~-----~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      +++++++.++....+.  .+..+.|..-  ++.   .     ++.+. ..|+||+++|+|+|+++|           .++
T Consensus       172 ~~r~~ai~~i~~~l~~~~iVV~~~G~~s~el~~~~~~~~~~~~~~f~-~~GsMG~a~p~AlG~ala-----------~p~  239 (361)
T TIGR03297       172 MTREEAIAAILDHLPDNTVIVSTTGKTSRELYELRDRIGQGHARDFL-TVGSMGHASQIALGLALA-----------RPD  239 (361)
T ss_pred             CCHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHhhcccccCCCCceE-eechhhhHHHHHHHHHHH-----------CCC
Confidence            6778888888777653  3445555421  111   1     23333 359999999999999999           689


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCC-CeEEEEEcCCcccccccc--cccCCcchhhccccCCc-cEEEEeCCCHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKL-PIVFVVENNLWAIGMSHL--RATSDPQIYKKGPAFGM-PGFHVDGMDVLK  300 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~L-Pvi~VV~NN~y~is~~~~--~q~~~~d~~~~A~a~Gi-~~~~Vdg~D~~~  300 (361)
                      ++|||+.|||+|.|.  .++|.|++++++ |+++||.||+ +++....  .....+|+.++|++||+ .+++|+..  .+
T Consensus       240 r~Vv~i~GDGsflm~--~~eL~t~~~~~~~nli~VVlNNg-~~~~~g~q~~~~~~~d~~~iA~a~G~~~~~~v~~~--~e  314 (361)
T TIGR03297       240 QRVVCLDGDGAALMH--MGGLATIGTQGPANLIHVLFNNG-AHDSVGGQPTVSQHLDFAQIAKACGYAKVYEVSTL--EE  314 (361)
T ss_pred             CCEEEEEChHHHHHH--HHHHHHHHHhCCCCeEEEEEcCc-cccccCCcCCCCCCCCHHHHHHHCCCceEEEeCCH--HH
Confidence            999999999999998  899999999997 7999999998 3332211  11235899999999997 56777654  45


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHH
Q 018048          301 VREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHL  346 (361)
Q Consensus       301 v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~  346 (361)
                      +    .+|++++++.++|+||||++.....-....|+  .++.|..
T Consensus       315 L----~~al~~a~~~~gp~lIeV~v~~g~~~~l~rp~--~~p~e~~  354 (361)
T TIGR03297       315 L----ETALTAASSANGPRLIEVKVRPGSRADLGRPT--TSPPENK  354 (361)
T ss_pred             H----HHHHHHHHhCCCcEEEEEEecCCCccCCCCCC--CCHHHHH
Confidence            5    45555566678999999999775543333333  4555543

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional

Probab=99.75  E-value=4.4e-17  Score=172.49  Aligned_cols=198  Identities=22%  Similarity=0.217  Sum_probs=128.0

Q ss_pred             eeeecCCCchhHHHHHHHhcC-CCc-EEEcc-cCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCC
Q 018048          117 GFVHLYNGQEAVSTGFIKLLK-KED-SVVST-YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGG  193 (361)
Q Consensus       117 g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~~-yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~  193 (361)
                      |+..++.|---+.+++...++ +.| +|++. |-...+.+..|. . +-+..+... .+    -.|.......+... ..
T Consensus        46 GH~g~~ls~vel~~aL~~~~~~prDr~i~s~GH~~Y~~~~l~g~-~-~~l~~~r~~-~~----l~g~p~~~e~~~~~-~~  117 (641)
T PRK12571         46 GHLGSSLGVVELTVALHAVFNTPKDKLVWDVGHQCYPHKILTGR-R-DRFRTLRQK-GG----LSGFTKRSESEYDP-FG  117 (641)
T ss_pred             CCcCCCchHHHHHHHHHHhcCCCCCcEEEECchHHHHHHHHhCC-H-HHHhhhhhC-CC----cCCCCCCCcCCCCC-cc
Confidence            667677777666666655555 445 55653 555555555553 2 222222211 11    11211110111111 11


Q ss_pred             ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc--
Q 018048          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL--  271 (361)
Q Consensus       194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~--  271 (361)
                      .++-+.+++.|+|+|+|.++.       .+++.|+|++|||++++|.++|+|++|+++++|+++|+.||+|.++.+..  
T Consensus       118 ~g~~~gslg~a~G~A~a~~~~-------~~~~~v~~v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~~~  190 (641)
T PRK12571        118 AAHSSTSISAALGFAKARALG-------QPDGDVVAVIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVGAL  190 (641)
T ss_pred             cCCCcChHHHHHHHHHHHHHh-------CCCCeEEEEEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCccHH
Confidence            222344566677777776655       57899999999999999999999999999999999999999998876552  


Q ss_pred             -----cccCCcch-----------------------------------hhccccCCccEE-EEeCCCHHHHHHHHHHHHH
Q 018048          272 -----RATSDPQI-----------------------------------YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIE  310 (361)
Q Consensus       272 -----~q~~~~d~-----------------------------------~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~  310 (361)
                           .-.....+                                   .++.++|||.++ .|||+|+.++.+++    +
T Consensus       191 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~a~G~~~~~~vdGhd~~~l~~al----~  266 (641)
T PRK12571        191 AAYLSTLRSSDPFARLRAIAKGVEERLPGPLRDGARRARELVTGMIGGGTLFEELGFTYVGPIDGHDMEALLSVL----R  266 (641)
T ss_pred             HHHHHHHhcCcchHHHHHHHHHHHhhcchhHHHHHHHHHHhhhhccchhhHHHHcCCEEECccCCCCHHHHHHHH----H
Confidence                 11111111                                   367889999999 79999988776544    4


Q ss_pred             HHHc-CCCCEEEEEEEecCCCCCC
Q 018048          311 RARR-GEGPTLVECETYRFRGHSL  333 (361)
Q Consensus       311 ~ar~-~~gP~lIev~t~R~~gHs~  333 (361)
                      .+++ .++|++|.++|.+..|.+.
T Consensus       267 ~ak~~~~~P~~I~~~T~kGkG~~~  290 (641)
T PRK12571        267 AARARADGPVLVHVVTEKGRGYAP  290 (641)
T ss_pred             HHHhCCCCCEEEEEEecCccCcch
Confidence            4554 4789999999999888763

>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed

Probab=99.74  E-value=5.4e-18  Score=163.13  Aligned_cols=116  Identities=19%  Similarity=0.190  Sum_probs=91.2

Q ss_pred             ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCc-ccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc
Q 018048          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGT-CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL  271 (361)
Q Consensus       194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs-~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~  271 (361)
                      .++||+++|+|+|+++|           .|+++||+++|||+ |++|  .++|.+|+++++||++||.||+ |++.....
T Consensus        68 ~g~mG~alpaAiGaklA-----------~Pd~~VV~i~GDG~~f~mg--~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~  134 (286)
T PRK11867         68 HTIHGRALAIATGLKLA-----------NPDLTVIVVTGDGDALAIG--GNHFIHALRRNIDITYILFNNQIYGLTKGQY  134 (286)
T ss_pred             hhhhhcHHHHHHHHHHh-----------CCCCcEEEEeCccHHHhCC--HHHHHHHHHhCCCcEEEEEeCHHHhhhcCcc
Confidence            38999999999999999           79999999999995 8899  9999999999999999999998 55422111


Q ss_pred             cc----------------cCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          272 RA----------------TSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       272 ~q----------------~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ..                ....++.++|.++|+.++. +...++.++    +.+++++++.+||+||||.+.
T Consensus       135 s~tt~~g~~~~~~~~g~~~~~~d~~~lA~a~Ga~~va~~~~~~~~el----~~al~~Al~~~Gp~lIev~~~  202 (286)
T PRK11867        135 SPTSPVGFVTKTTPYGSIEPPFNPVELALGAGATFVARGFDSDVKQL----TELIKAAINHKGFSFVEILQP  202 (286)
T ss_pred             CCCCCCCcccccccCCCCCCCCCHHHHHHHCCCcEEEEecCCCHHHH----HHHHHHHHhCCCCEEEEEeCC
Confidence            00                0125789999999998873 344555555    555556666789999999763

>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.74  E-value=6.4e-18  Score=161.80  Aligned_cols=118  Identities=21%  Similarity=0.172  Sum_probs=93.2

Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-cccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~  269 (361)
                      +..+.||+++|+|+|+++|           .|+++||++.|||++. +|  .++|.+|+++++||++||.||+ |++...
T Consensus        57 ~~~~~mG~alp~AiGaklA-----------~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~  123 (280)
T PRK11869         57 GFHTLHGRAIPAATAVKAT-----------NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLTKG  123 (280)
T ss_pred             CCCcccccHHHHHHHHHHH-----------CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhhcc
Confidence            3446799999999999999           7899999999999998 67  8999999999999999999998 554221


Q ss_pred             ccc----------------ccCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          270 HLR----------------ATSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       270 ~~~----------------q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +..                ....+|+.++|+++|++++... -.++.++    .++++++.+.+||+||||.+.
T Consensus       124 Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA~a~G~~~va~~~~~~~~~l----~~~i~~Al~~~Gp~lIeV~~p  193 (280)
T PRK11869        124 QASPTTLKGFKTPTQPWGVFEEPFNPIALAIALDASFVARTFSGDIEET----KEILKEAIKHKGLAIVDIFQP  193 (280)
T ss_pred             eecCCCCCCcccccCCCCccCCCCCHHHHHHHCCCCEEEEeCCCCHHHH----HHHHHHHHhCCCCEEEEEECC
Confidence            110                0123699999999999988743 4466665    445555667799999999874

>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.73  E-value=1.8e-17  Score=158.73  Aligned_cols=118  Identities=23%  Similarity=0.280  Sum_probs=94.1

Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCC-cccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDG-s~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~  269 (361)
                      ...++||+++|+|+|+++|           .|+++||++.||| +|.+|  .++|.+|+++|+|+++||.||+ |++...
T Consensus        56 ~~~~~~G~alp~A~GaklA-----------~Pd~~VV~i~GDG~~f~ig--~~eL~tA~rrn~~i~vIV~nN~~ygmtgg  122 (279)
T PRK11866         56 GIHGIHGRVLPIATGVKWA-----------NPKLTVIGYGGDGDGYGIG--LGHLPHAARRNVDITYIVSNNQVYGLTTG  122 (279)
T ss_pred             CcccccccHHHHHHHHHHH-----------CCCCcEEEEECChHHHHcc--HHHHHHHHHHCcCcEEEEEEChhhhhhcc
Confidence            4578999999999999999           7999999999999 69999  9999999999999999999998 554321


Q ss_pred             ccccc----------------CCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          270 HLRAT----------------SDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       270 ~~~q~----------------~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ++..+                ...|+.++|+++|++++. ....++.++    +++++++++.+||++||+...
T Consensus       123 Q~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~a~G~~~Va~~~~~~~~~l----~~~l~~Al~~~Gps~I~v~~p  192 (279)
T PRK11866        123 QASPTTPRGVKTKTTPDGNIEEPFNPIALALAAGATFVARGFSGDVKHL----KEIIKEAIKHKGFSFIDVLSP  192 (279)
T ss_pred             cccCCCCCCceeeccCCCCCCCCCCHHHHHHHCCCCEEEEEcCCCHHHH----HHHHHHHHhCCCCEEEEEeCC
Confidence            11100                013899999999999874 455666665    555556667899999999763

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=99.72  E-value=3.1e-17  Score=172.65  Aligned_cols=162  Identities=22%  Similarity=0.167  Sum_probs=125.0

Q ss_pred             CCcchhhcCCCCHHHHHHHHhcCcCC--CcccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          147 RDHVHALSKGVPARAVMSELFGKATG--CCRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       147 R~~~~~l~~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      .++...+.-|.+...++.+|....+.  +..+|.|.+.+|.. +..+...+++||+++|+|+|+++|           .+
T Consensus       352 ~~r~~~~C~GCp~~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~p~~~~~~~~~mG~~~~~AiGa~~a-----------~p  420 (595)
T TIGR03336       352 PVRPPSLCAGCPHRATFYAMKKVADREAIFPSDIGCYTLGIQPPLGTVDTTLCMGASIGVASGLSKA-----------GE  420 (595)
T ss_pred             CCCCCCCCCCCCChHHHHHHHHhccCCcEEecCcchhhccccCCccccceeeccCchHHHHhhhhhc-----------CC
Confidence            34556677888888899988888763  46688887766542 334445578999999999999999           78


Q ss_pred             CceEEEEECCCcccC-cchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc-c---------cCCcchhhccccCCccEE
Q 018048          224 DHVTLAFFGDGTCNN-GQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR-A---------TSDPQIYKKGPAFGMPGF  291 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~-g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~-q---------~~~~d~~~~A~a~Gi~~~  291 (361)
                      +++||+++|||+|.+ |  .++|.||+++++|+++||.||+ |++....+. .         ...+|+.++|++||++++
T Consensus       421 ~~~Vv~i~GDG~f~~~g--~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~  498 (595)
T TIGR03336       421 KQRIVAFIGDSTFFHTG--IPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVEFV  498 (595)
T ss_pred             CCCEEEEeccchhhhcC--HHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCCEE
Confidence            999999999999996 6  8999999999999999999997 554221110 0         124789999999999999


Q ss_pred             EEeCCC-HHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          292 HVDGMD-VLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       292 ~Vdg~D-~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      +|...+ +.+    +..+++++++.++|++|++..
T Consensus       499 ~v~~~~~l~~----l~~al~~a~~~~gp~li~v~~  529 (595)
T TIGR03336       499 EVVDPLNVKE----TIEVFKAALAAEGVSVIIAKQ  529 (595)
T ss_pred             EEeCcCCHHH----HHHHHHHHHhcCCCEEEEEcc
Confidence            997764 333    455666666778999999965

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family

Probab=99.72  E-value=2.7e-17  Score=157.99  Aligned_cols=116  Identities=22%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc
Q 018048          193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH  270 (361)
Q Consensus       193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~  270 (361)
                      ..+.||+++|+|+|+++|           .|+++||+++|||++. +|  .++|.+|+++++||++||.||+ |++...+
T Consensus        51 ~~t~mG~alPaAiGaklA-----------~Pd~~VVai~GDG~f~~mg--~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ  117 (287)
T TIGR02177        51 FHGLHGRALPVATGIKLA-----------NPHLKVIVVGGDGDLYGIG--GNHFVAAGRRNVDITVIVHDNQVYGLTKGQ  117 (287)
T ss_pred             cccccccHHHHHHHHHHH-----------CCCCcEEEEeCchHHHhcc--HHHHHHHHHhCcCeEEEEEECHHHHhhhcc
Confidence            346689999999999999           7999999999999975 88  9999999999999999999998 5442211


Q ss_pred             cccc------------------CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          271 LRAT------------------SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       271 ~~q~------------------~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +..+                  .++++.++|.++|+.+...- .++.++    ++++++|.+.+||+||||.+.
T Consensus       118 ~sp~t~~G~~~~~~~~g~~~~~~np~~~a~A~g~g~va~~~~-~~~~eL----~~ai~~Al~~~GpslIeV~~p  186 (287)
T TIGR02177       118 ASPTLLKGVKTKSLPYPNIQDPVNPLLLAIALGYTFVARGFS-GDVAHL----KEIIKEAINHKGYALVDILQP  186 (287)
T ss_pred             cccCccCCcceeecccCccCCCCCHHHHHHhCCCCeEEEEec-CCHHHH----HHHHHHHHhCCCCEEEEEeCC
Confidence            1100                  13457788888887766522 455565    555555667899999999874

Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.

>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type

Probab=99.72  E-value=9.1e-16  Score=163.69  Aligned_cols=171  Identities=19%  Similarity=0.073  Sum_probs=130.9

Q ss_pred             CccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEE
Q 018048          179 GSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVF  257 (361)
Q Consensus       179 G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~  257 (361)
                      +..|.+..+..+-..+|+||.|++.|+|.|++.|+....+.....++.|+|++|||.+++|.++|++.+|++++|. +++
T Consensus       173 shPhp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~  252 (885)
T TIGR00759       173 SYPHPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTF  252 (885)
T ss_pred             CCCCcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEE
Confidence            3334433233344567999999999999999999854433222467899999999999999999999999999998 999


Q ss_pred             EEEcCCcccccccccccC-CcchhhccccCCccEEEE-------------------------------------------
Q 018048          258 VVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV-------------------------------------------  293 (361)
Q Consensus       258 VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V-------------------------------------------  293 (361)
                      ||.+|...+..+...... ..++.++.+++||.+++|                                           
T Consensus       253 IVD~N~~qlDG~v~~~~~i~e~le~~F~a~GW~Vi~V~wg~~wd~lf~~d~~g~L~~~m~~~~dg~yq~~~~~~Ga~~R~  332 (885)
T TIGR00759       253 VINCNLQRLDGPVRGNGKIIQELESLFRGAGWNVIKVLWGSEWDALLARDTSGVLVKLMNETVDGDYQTYKAKDGAYVRE  332 (885)
T ss_pred             EEeCCCCccCCccccccccchhHHHHHHhcCCEEEEEecCccchHhhcCCCccHHHHHHHhcccHHHHHHhhcchHHHHH
Confidence            999998787766554333 457999999999999999                                           


Q ss_pred             --------------------------eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC---CCCC----CCC
Q 018048          294 --------------------------DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL---ADPD----ELR  340 (361)
Q Consensus       294 --------------------------dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~---~Dp~----~yR  340 (361)
                                                +|+|+.++++++..|.+   ..++|++|.++|.+.+|.+.   .+..    ..-
T Consensus       333 ~ffg~~~~l~~lv~~~sD~~i~~l~rgGHD~~~I~~A~~~A~~---~~grPTvIlA~TvKG~G~~~~~e~~n~~H~~k~l  409 (885)
T TIGR00759       333 HFFNRTPELKALVADMSDADIWALNRGGHDPRKVYAAYAAAQE---HKGQPTVILAKTIKGYGMGDAAESRNTAHQVKKL  409 (885)
T ss_pred             HhccccHHHHHHhhccchhhhhhccCCCCCHHHHHHHHHHHHh---CCCCCEEEEEeeeecCCCChhhCCCcccccCCCC
Confidence                                      59999998887766543   23579999999999998772   2222    234


Q ss_pred             CHHHHHhHHHhh
Q 018048          341 DPGEHLVLVLFI  352 (361)
Q Consensus       341 ~~~e~~~~~~~~  352 (361)
                      +.++++.+...+
T Consensus       410 ~~e~l~~~r~~~  421 (885)
T TIGR00759       410 EVDALKNFRDRF  421 (885)
T ss_pred             CHHHHHHHHHHc
Confidence            788887775544

WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.

>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase

Probab=99.71  E-value=1.2e-15  Score=164.26  Aligned_cols=258  Identities=17%  Similarity=0.135  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHH-HHHHHhcCC------CcEEEcccCCcchh------
Q 018048           86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVS-TGFIKLLKK------EDSVVSTYRDHVHA------  152 (361)
Q Consensus        86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~-vg~~~~l~~------~D~v~~~yR~~~~~------  152 (361)
                      +.++.+-....++...++.........+++.|+..++.+.--+. +.....|+.      +|+|++.-  |+..      
T Consensus        71 d~~~~~~~a~~iR~~a~~mv~~A~~~~~~~gGH~gs~lS~a~i~~vLy~~~lr~~~~~~~rD~VlskG--Hasp~lYA~l  148 (889)
T TIGR03186        71 DLQLEERLAAILRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRAAGDASGGDLVYFQP--HSAPGVYARA  148 (889)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCcCcHHHHHHHHHHHHHhCCCCCCCCCCCEEEECC--chHHHHHHHH
Confidence            33444555555544444433222222345556555544443332 223344552      57777652  3221      


Q ss_pred             hcCCC-CHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048          153 LSKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF  231 (361)
Q Consensus       153 l~~g~-~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~  231 (361)
                      ...|. +.++ +..+.....+  .+-.+..|.+..+..+-..+|+||.|++.|+|.|++.||..+.+.....+..|+|++
T Consensus       149 ~l~G~l~~e~-L~~fRq~~~~--~gl~~~phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~ll  225 (889)
T TIGR03186       149 FLEGFLSDAQ-LAHYRQEIAG--PGLCSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFF  225 (889)
T ss_pred             HHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEE
Confidence            11343 3333 3334322111  122233344332223445689999999999999999997654311123568899999


Q ss_pred             CCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccccccccC-CcchhhccccCCccEEEE----------------
Q 018048          232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV----------------  293 (361)
Q Consensus       232 GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V----------------  293 (361)
                      |||.+++|.++|++.+|++++|. +|+||.+|...+..+...... ..++.++.++|||.++.|                
T Consensus       226 GDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~qlDG~t~~~~~~~e~l~~kf~a~GW~vi~v~wG~~wd~l~~~d~~~  305 (889)
T TIGR03186       226 GDGEMDEPESIGALSLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELESQFAGAGWNVIKVLWGSDWDALFARDATG  305 (889)
T ss_pred             cchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCccCCccccccccchHHHHHHHhCCCEEEEEeecCchHHhhccccch
Confidence            99999999999999999999998 999999998777666554222 468999999999999999                


Q ss_pred             -----------------------------------------------------eCCCHHHHHHHHHHHHHHHHcCCCCEE
Q 018048          294 -----------------------------------------------------DGMDVLKVREVAKEAIERARRGEGPTL  320 (361)
Q Consensus       294 -----------------------------------------------------dg~D~~~v~~al~~Al~~ar~~~gP~l  320 (361)
                                                                           +|+|+.++++++++|.+   ..++|++
T Consensus       306 ~L~~~~~~~~dg~yq~~~~~~ga~~R~~ff~~~~~~~~lv~~~sD~~i~~l~rgGHD~~~i~~A~~~A~~---~~~~PTv  382 (889)
T TIGR03186       306 ALARAFAHTVDGQFQTFSANDGAYNRARFFGQDPALAALVAHLSDEDIDRLRRGGHDARKLYAAYDRAVR---HEGRPTV  382 (889)
T ss_pred             HHHHHHHhcccHHHHHHhhcchHHHHHHhcCccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence                                                                 59999999887776653   2368999


Q ss_pred             EEEEEecCCCCCCC-CC-----C-CCCCHHHHHhHHHh
Q 018048          321 VECETYRFRGHSLA-DP-----D-ELRDPGEHLVLVLF  351 (361)
Q Consensus       321 Iev~t~R~~gHs~~-Dp-----~-~yR~~~e~~~~~~~  351 (361)
                      |.++|...+|-+.. +.     + ..-++++++.+...
T Consensus       383 Ila~TvkG~G~~~~g~~~~~~H~~~~l~~e~~~~~r~~  420 (889)
T TIGR03186       383 ILAKTMKGFGMGAIGQGRMTTHQQKKLDVEALLAFRDR  420 (889)
T ss_pred             EEEEeeecCCCCcccCccccccCcCcCCHHHHHHHHHH
Confidence            99999998885432 21     1 33466666655443

Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.

>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2

Probab=99.71  E-value=4.7e-17  Score=159.56  Aligned_cols=156  Identities=23%  Similarity=0.302  Sum_probs=114.5

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhh---cCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA  265 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~---~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~  265 (361)
                      +-..+|+||.|++.|+|+|+|.|+.+.....   ..-+..|+|++|||.+++|.++|++.+|+.++|. +|+|+.+|+..
T Consensus       106 ie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q  185 (332)
T PF00456_consen  106 IEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQ  185 (332)
T ss_dssp             -SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEE
T ss_pred             eEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcc
Confidence            3346899999999999999999887544321   1236789999999999999999999999999999 99999999877


Q ss_pred             cccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecCCCCCCCC-CC--CC-
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVECETYRFRGHSLAD-PD--EL-  339 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~~gHs~~D-p~--~y-  339 (361)
                      +....... ...|+.++.++||+.++.| ||+|+.++++++.+    ++.. ++|++|.+.|....|.+... ..  .+ 
T Consensus       186 ~dg~~~~~-~~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~----a~~~~~kP~~Ii~~TvkG~G~~~~e~~~~~Hg~  260 (332)
T PF00456_consen  186 IDGPTDIV-FSEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEE----AKASKGKPTVIIARTVKGKGVPFMEGTAKWHGS  260 (332)
T ss_dssp             TTEEGGGT-HHSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHH----HHHSTSS-EEEEEEE-TTTTSTTTTTSGGGTSS
T ss_pred             cCCCcccc-cchHHHHHHHHhhhhhcccccCcHHHHHHHHHHH----HHhcCCCCceeecceEEecCchhhcccchhhcc
Confidence            76554432 2467899999999999998 99999887665554    4444 79999999999999986542 21  12 


Q ss_pred             -CCHHHHHhHHH
Q 018048          340 -RDPGEHLVLVL  350 (361)
Q Consensus       340 -R~~~e~~~~~~  350 (361)
                       -+++|++....
T Consensus       261 ~l~~ee~~~~k~  272 (332)
T PF00456_consen  261 PLTEEEVEQAKK  272 (332)
T ss_dssp             --HHHHHHHHHH
T ss_pred             CCcHHHHHHHHH
Confidence             25666655544

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....

>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.70  E-value=1.2e-15  Score=160.37  Aligned_cols=200  Identities=17%  Similarity=0.197  Sum_probs=132.2

Q ss_pred             ceeeecCCCchhHHHHHHHhcC-CCc-EEEcc-cCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCC-cccccccc-ccc
Q 018048          116 FGFVHLYNGQEAVSTGFIKLLK-KED-SVVST-YRDHVHALSKGVPARAVMSELFGKATGCCRGQGG-SMHMFSKE-HNL  190 (361)
Q Consensus       116 ~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~~-yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G-~~h~~~~~-~~~  190 (361)
                      .|++.++.|---+.+++...++ +.| +|+.. |-..++.+..|..         +..... .-.+| +.|.-... ...
T Consensus       103 ~GHlgssLs~vEl~~aL~~vf~~p~DriI~s~GHqaya~~~ltgr~---------~~l~t~-r~~ggl~G~p~~~es~~d  172 (641)
T PLN02234        103 GGHLGSNLGVVELTVALHYIFNTPHDKILWDVGHQSYPHKILTGRR---------GKMKTI-RQTNGLSGYTKRRESEHD  172 (641)
T ss_pred             CCCccccchHHHHHHHHHHhcCCCCCeEEEecchhHHHHHHHHhhh---------hhhccc-ccCCCcCCCCCCCCCCCc
Confidence            4777777887666666665565 456 44442 4444444333221         111111 11111 11211111 122


Q ss_pred             cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc----
Q 018048          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI----  266 (361)
Q Consensus       191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i----  266 (361)
                      ..+.|++|.++++|+|.|+|.+++       +.+..|+|++|||++++|.+||+|+.|+..+-++|+||.+|+..+    
T Consensus       173 ~~~tGslg~glS~a~GmA~a~~l~-------g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~  245 (641)
T PLN02234        173 SFGTGHSSTTLSAGLGMAVGRDLK-------GMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTA  245 (641)
T ss_pred             EECCCchHHHHHHHHHHHHHHHhC-------CCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCccccc
Confidence            346799999999999999998877       467889999999999999999999999977777999999998521    


Q ss_pred             --cccccccc-----------CC----cchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          267 --GMSHLRAT-----------SD----PQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       267 --s~~~~~q~-----------~~----~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                        ..+...-.           ..    .+..++.++||+.++ .|||+|+.++.++++.+-  ....++|++|.++|.+.
T Consensus       246 q~~g~~~~v~~l~~~l~~l~~~~~~~~~~~~~~fe~fG~~~~g~vDGHd~~~l~~al~~~k--~~~~~~P~vI~~~T~KG  323 (641)
T PLN02234        246 NLDGPTQPVGALSCALSRLQSNCGMIRETSSTLFEELGFHYVGPVDGHNIDDLVSILETLK--STKTIGPVLIHVVTEKG  323 (641)
T ss_pred             ccCCCCCCcccHHHHHHHhhcccccccCCHHHHHHHcCCEEEeeECCCCHHHHHHHHHHHH--hcCCCCCEEEEEEEecC
Confidence              11111000           00    245678899999999 999999998776665431  11235899999999999


Q ss_pred             CCCCCC
Q 018048          329 RGHSLA  334 (361)
Q Consensus       329 ~gHs~~  334 (361)
                      .|.+..
T Consensus       324 kGv~~~  329 (641)
T PLN02234        324 RGYPYA  329 (641)
T ss_pred             CCcchh
Confidence            988865

>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.70  E-value=5.6e-16  Score=164.07  Aligned_cols=197  Identities=18%  Similarity=0.249  Sum_probs=130.4

Q ss_pred             eeeecCCCchhHHHHHHHhcC-CCcE-EEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCcccccccc-ccccC
Q 018048          117 GFVHLYNGQEAVSTGFIKLLK-KEDS-VVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKE-HNLLG  192 (361)
Q Consensus       117 g~~~~~~GqEa~~vg~~~~l~-~~D~-v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~-~~~~~  192 (361)
                      |+..++.|---+.+++...++ +.|. |+. -|-..++.+..|.. ++ +..+. +..+    -.|  |.-..+ ....-
T Consensus        71 GH~g~~Ls~vel~~aL~~~~~~p~Dr~i~s~GH~ay~~~~l~gr~-~~-l~~~r-~~g~----l~g--~p~~~e~~~~~~  141 (677)
T PLN02582         71 GHLGSSLGVVELTVALHYVFNAPQDKILWDVGHQSYPHKILTGRR-DK-MHTMR-QTNG----LSG--FTKRAESEYDCF  141 (677)
T ss_pred             CCcCccccHHHHHHHHHHhhCCCCCeEEEECcchHHHHHHHHccH-HH-hcccc-cCCC----cCC--CCCCCCCCCcee
Confidence            666677777666666665565 5674 444 35444454444431 11 11111 1111    111  211111 11234


Q ss_pred             CccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc--
Q 018048          193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH--  270 (361)
Q Consensus       193 ~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~--  270 (361)
                      +.|++|.+++.|+|+|+|.+++       +.++.|+|++|||++++|.+||+|+.|+.+++|+++||+||+. +|.|+  
T Consensus       142 ~~G~~g~~ls~a~G~A~a~~~~-------~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~~-~s~~~~~  213 (677)
T PLN02582        142 GTGHSSTTISAGLGMAVGRDLK-------GKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNKQ-VSLPTAT  213 (677)
T ss_pred             ccchhhhhHHHHHHHHHHHHhc-------CCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCCC-ccccccc
Confidence            5799999999999999998877       5678999999999999999999999999999999999999983 23211  


Q ss_pred             -----ccc--c--------CC---------------------cchh----------------hccccCCccEE-EEeCCC
Q 018048          271 -----LRA--T--------SD---------------------PQIY----------------KKGPAFGMPGF-HVDGMD  297 (361)
Q Consensus       271 -----~~q--~--------~~---------------------~d~~----------------~~A~a~Gi~~~-~Vdg~D  297 (361)
                           ...  .        ..                     .++.                .+.++||+.|+ .|||+|
T Consensus       214 ~~s~~~~vg~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~fe~~G~~y~g~iDGHd  293 (677)
T PLN02582        214 LDGPAPPVGALSSALSRLQSSRPLRELREVAKGVTKQIGGPMHELAAKVDEYARGMISGSGSTLFEELGLYYIGPVDGHN  293 (677)
T ss_pred             cCCCCCCccHHHHHHHHHhcchhHHHHHHHHHHHHHhCcHhHHHHHHHHHHHhhhccCccccchHHHcCCeEEeeeCCCC
Confidence                 000  0        00                     0010                24678999988 999999


Q ss_pred             HHHHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCCCCC
Q 018048          298 VLKVREVAKEAIERARRG--EGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~--~gP~lIev~t~R~~gHs~~  334 (361)
                      +.++.++++    .++..  ++|++|+++|.+..|...+
T Consensus       294 ~~~L~~al~----~~k~~~~~~P~vihv~T~KGkG~~~a  328 (677)
T PLN02582        294 IDDLVTILR----EVKSTKTTGPVLIHVVTEKGRGYPYA  328 (677)
T ss_pred             HHHHHHHHH----HHHhcCCCCCEEEEEEecCCCCCChh
Confidence            988765544    45553  5999999999999888765

>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.70  E-value=3.7e-16  Score=150.70  Aligned_cols=169  Identities=16%  Similarity=0.122  Sum_probs=125.9

Q ss_pred             ccCCcchhhcCCCCHH-HHHHHHhcCcC------CCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhh
Q 018048          145 TYRDHVHALSKGVPAR-AVMSELFGKAT------GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREV  217 (361)
Q Consensus       145 ~yR~~~~~l~~g~~~~-~~~~el~~~~~------g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~  217 (361)
                      -||+|+...+.|.++. +++.+..+...      |+..+.+|.+|+..  .++......+|.++++|.|+++|.+.++  
T Consensus        14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~--~~~~~i~~~~G~~~~~A~G~a~A~~~~~--   89 (300)
T PRK11864         14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSP--LTVPVLHTAFAATAAVASGIEEALKARG--   89 (300)
T ss_pred             ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCccc--ccccceeehhhChHHHHHHHHHHHHhhC--
Confidence            4788888877787776 77777776544      44444445443322  2455668899999999999999987763  


Q ss_pred             hhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------------cCCcchh
Q 018048          218 LKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------------TSDPQIY  280 (361)
Q Consensus       218 ~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------------~~~~d~~  280 (361)
                          .++..|++++|||++..+.+ ++|+.|+.+++||++||.||+|...+-.|..                 ....|+.
T Consensus        90 ----~~~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~  164 (300)
T PRK11864         90 ----EKGVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVP  164 (300)
T ss_pred             ----CCCcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHH
Confidence                23456677999999997764 9999999999999999999996554432211                 1235889


Q ss_pred             hccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          281 KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +++.++|++++ +++..|+.++.+.+++|+    +.+||.+|++.+.
T Consensus       165 ~i~~a~g~~yVA~~~~~~~~~~~~~i~~A~----~~~Gps~I~~~sp  207 (300)
T PRK11864        165 DIMAAHKVPYVATASIAYPEDFIRKLKKAK----EIRGFKFIHLLAP  207 (300)
T ss_pred             HHHHHcCCCEEEEEeCCCHHHHHHHHHHHH----hCCCCEEEEEeCC
Confidence            99999999988 778888888766555554    5789999999763

>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional

Probab=99.68  E-value=3.4e-15  Score=161.27  Aligned_cols=258  Identities=18%  Similarity=0.129  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhH-HHHHHHhcC------CCcEEEcccCCcchh------
Q 018048           86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAV-STGFIKLLK------KEDSVVSTYRDHVHA------  152 (361)
Q Consensus        86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~-~vg~~~~l~------~~D~v~~~yR~~~~~------  152 (361)
                      +.++.+-.+..++-..++.-.......+++.|+..++.+.--+ .++....|+      ..|.|+..  +|+..      
T Consensus        85 d~~~e~~i~~~iR~~a~~mv~~A~~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~~  162 (896)
T PRK13012         85 DLALEERLAAIIRWNALAMVVRANRAYGELGGHIASYASAADLFEVGFNHFFRGRDDAGGGDLVYFQ--PHSAPGIYARA  162 (896)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcccHHHHHHHHHHHHhhcCCCCCCCCCCEEEEC--cchHHHHHHHH
Confidence            3345554555554444443333333345566665554444322 222333455      46777664  33321      


Q ss_pred             hcCC-CCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048          153 LSKG-VPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF  231 (361)
Q Consensus       153 l~~g-~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~  231 (361)
                      ...| ++.++ +..+.....  ..|-.+..|.+.-+..+--.+|+||.|++.|+|.|++.||....+.....++.|+|++
T Consensus       163 ~l~G~l~~e~-L~~fR~~~~--~~gl~~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~l  239 (896)
T PRK13012        163 FLEGRLSEEQ-LDHFRQEIG--GPGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFF  239 (896)
T ss_pred             HHcCCCCHHH-HHHhcCCCC--CCCCCCCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEE
Confidence            1134 23333 333332211  1222333343332323444679999999999999999886533221124678999999


Q ss_pred             CCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccccccccC-CcchhhccccCCccEEEE----------------
Q 018048          232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV----------------  293 (361)
Q Consensus       232 GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V----------------  293 (361)
                      |||.+++|..+|++.+|++++|. +++||.+|...+..+...... ..++.++.+++||.+++|                
T Consensus       240 GDGEl~Eg~~~eA~~~A~~~~LdNLi~ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wg~~wd~l~~~d~~~  319 (896)
T PRK13012        240 GDGEMDEPESIAALSLAAREGLDNLVFVINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIKVLWGSDWDALFARDTTG  319 (896)
T ss_pred             chhhhccHHHHHHHHHHHHhCCCcEEEEEECCCccccCccccccccchHHHHHHHhCCCEEEEEecccchHHHhcCCCcc
Confidence            99999999999999999999998 999999998777666554333 368999999999999999                


Q ss_pred             ----------e-------------------------------------------CCCHHHHHHHHHHHHHHHHcCCCCEE
Q 018048          294 ----------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGPTL  320 (361)
Q Consensus       294 ----------d-------------------------------------------g~D~~~v~~al~~Al~~ar~~~gP~l  320 (361)
                                |                                           |+|+.+++++++.|.+   ..++|++
T Consensus       320 ~l~~~~~~~~Dg~yq~~~~~~g~~~r~~ff~~~~~~~~lv~~~~d~~i~~l~rgGHD~~~i~~A~~~a~~---~~~~Ptv  396 (896)
T PRK13012        320 ALVRRFAETVDGQFQTFKANDGAYNREHFFGQDPELAALVAHLSDEDIDRLKRGGHDPRKVYAAYAAAVR---HKGQPTV  396 (896)
T ss_pred             HHHHHHHhCCcHHHHHHhhcchHHHHHHhccccHHHHHHhhcccHHhhhhhcCCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence                      8                                           9999999887766543   2457999


Q ss_pred             EEEEEecCCCCCCC-CCC------CCCCHHHHHhHHHh
Q 018048          321 VECETYRFRGHSLA-DPD------ELRDPGEHLVLVLF  351 (361)
Q Consensus       321 Iev~t~R~~gHs~~-Dp~------~yR~~~e~~~~~~~  351 (361)
                      |.++|.+.+|-+.. ..+      .--++++++.+...
T Consensus       397 Ila~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~  434 (896)
T PRK13012        397 ILAKTKKGYGMGEAGEGRMTTHQQKKLDVEALKAFRDR  434 (896)
T ss_pred             EEEEeeecCCCCcccCCCcccccCCCCCHHHHHHHHHH
Confidence            99999999886521 211      23466776665443

>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed

Probab=99.63  E-value=2.7e-14  Score=153.95  Aligned_cols=258  Identities=18%  Similarity=0.144  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhH-HHHHHHhcCC------CcEEEcccCCcchh------
Q 018048           86 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAV-STGFIKLLKK------EDSVVSTYRDHVHA------  152 (361)
Q Consensus        86 ~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~-~vg~~~~l~~------~D~v~~~yR~~~~~------  152 (361)
                      +.++.+.....++...++.-........++.|+..++.+.--+ .++....|+.      +|+|+..  +|+..      
T Consensus        77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a~i~~vl~~~~~r~~~~~~~~D~V~sk--GHasp~lYA~~  154 (891)
T PRK09405         77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSATLYEVGFNHFFRAPNEPHGGDLVFFQ--GHASPGIYARA  154 (891)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHHHHHHHHHHhhCCCCCCCCCCCEEEEC--chHHHHHHHHH
Confidence            4456666666665455544333322233454555444433222 2233344553      5777754  33322      


Q ss_pred             hcCCC-CHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE
Q 018048          153 LSKGV-PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF  231 (361)
Q Consensus       153 l~~g~-~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~  231 (361)
                      ...|. +.++ +..+....++  .+-.+..|.+..+..+...+++||.|++.|+|.|++.||..+..-....++.|+|++
T Consensus       155 ~l~G~l~~e~-L~~fR~~~~g--~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv~~~~  231 (891)
T PRK09405        155 FLEGRLTEEQ-LDNFRQEVDG--KGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKVWAFL  231 (891)
T ss_pred             HHcCCCCHHH-HHHhcCCCCC--CCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceEEEEE
Confidence            11342 3333 3333332111  122333344332322334568999999999999999886432211114578999999


Q ss_pred             CCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccccccccC-CcchhhccccCCccEEEE----------------
Q 018048          232 GDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHV----------------  293 (361)
Q Consensus       232 GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~V----------------  293 (361)
                      |||.+++|..+|++.+|++++|. +++||.+|...+..+...... ..++.++.+++||.++.|                
T Consensus       232 GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~v~wG~~wd~l~~~d~~g  311 (891)
T PRK09405        232 GDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRGAGWNVIKVIWGSRWDPLLAKDTSG  311 (891)
T ss_pred             cchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhhCCCEEEEEeccccchhhhccCCcc
Confidence            99999999999999999999998 999999998787766554222 468999999999999999                


Q ss_pred             ----------e-------------------------------------------CCCHHHHHHHHHHHHHHHHcCCCCEE
Q 018048          294 ----------D-------------------------------------------GMDVLKVREVAKEAIERARRGEGPTL  320 (361)
Q Consensus       294 ----------d-------------------------------------------g~D~~~v~~al~~Al~~ar~~~gP~l  320 (361)
                                |                                           |+|+.+++++++.|.+   ..++|++
T Consensus       312 ~L~~~~~~~~Dg~yq~~~~~~ga~~R~~ffg~~~~~~~lv~~~sD~~i~~l~~gGHD~~~i~~A~~~A~~---~~~~Ptv  388 (891)
T PRK09405        312 KLVQLMNETVDGDYQTYKAKDGAYVREHFFGKYPETKALVADMSDDDIWALNRGGHDPRKVYAAYKAAVE---HKGQPTV  388 (891)
T ss_pred             HHHHHHHhCCcHHHHHHHhcccHHHHHHhcCCCHHHHHHHhhCCHHHHHHhccCCCCHHHHHHHHHHHHh---CCCCCEE
Confidence                      3                                           9999998887766543   2368999


Q ss_pred             EEEEEecCCCC-CCCCCC------CCCCHHHHHhHHHh
Q 018048          321 VECETYRFRGH-SLADPD------ELRDPGEHLVLVLF  351 (361)
Q Consensus       321 Iev~t~R~~gH-s~~Dp~------~yR~~~e~~~~~~~  351 (361)
                      |.++|.+.+|. +....+      .--++++++.+...
T Consensus       389 Iia~TvkG~G~~~~~e~~~~~H~~~~l~~e~~~~~r~~  426 (891)
T PRK09405        389 ILAKTIKGYGMGEAGEGKNIAHQVKKLDLDDLKHFRDR  426 (891)
T ss_pred             EEEeceecCCCCcccCCCccccCCCCCCHHHHHHHHHH
Confidence            99999999887 433211      23467777666543

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=99.63  E-value=5e-16  Score=179.12  Aligned_cols=117  Identities=21%  Similarity=0.170  Sum_probs=96.5

Q ss_pred             cCCcccccc--ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhC--CCCeEEEEEcCCccc
Q 018048          191 LGGFAFIGE--GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW--KLPIVFVVENNLWAI  266 (361)
Q Consensus       191 ~~~~g~mG~--~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~--~LPvi~VV~NN~y~i  266 (361)
                      .++.|+||+  ++|.|+|+++|           . +++|+|++|||+|+|.  .+||.||+++  ++|+++||.||+ ++
T Consensus       755 ~~~~G~mG~~G~lpaAIGaala-----------~-~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~-gg  819 (1655)
T PLN02980        755 AGNRGASGIDGLLSTAIGFAVG-----------C-NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNH-GG  819 (1655)
T ss_pred             EecCCccchhhhHHHHHHHhhc-----------C-CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCC-Cc
Confidence            457799999  59999999998           4 7899999999999998  9999999984  999999999998 33


Q ss_pred             ccccc-------c-----c----cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          267 GMSHL-------R-----A----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       267 s~~~~-------~-----q----~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      ++...       .     +    ..++||.++|++||+++.+|+..+      ++++|++++.+.++|+||||.|.|.
T Consensus       820 gi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~~~------eL~~aL~~a~~~~~p~lIEV~t~~~  891 (1655)
T PLN02980        820 AIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVGTKS------ELEDALFTSQVEQMDCVVEVESSID  891 (1655)
T ss_pred             HhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecCCHH------HHHHHHHHhhccCCCEEEEEecChh
Confidence            33211       0     0    135799999999999999998765      4566777777789999999999864

>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=99.62  E-value=2.1e-15  Score=150.40  Aligned_cols=232  Identities=16%  Similarity=0.163  Sum_probs=148.6

Q ss_pred             CCCcccccchhHHHHHHhhhcccccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHH
Q 018048           56 GNVRRRLPVVAVSEVVKEKKVKSISNLLIT-KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIK  134 (361)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~  134 (361)
                      +..|-..+.-|..|+.+|++..+...++++ ..|+......+.  +++.       .+..       +.|-+--|+   .
T Consensus       296 ~Pk~~kd~KfIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~--e~l~-------~~~~-------~~~~s~~w~---k  356 (571)
T KOG1185|consen  296 PPKWSKDVKFIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLV--EELQ-------DQPW-------TWGPSTDWV---K  356 (571)
T ss_pred             CCccCCCceEEEEeCCHHHHhcccCCCCceeeecHHHHHHHHH--HHhc-------CCCc-------ccCCchhHH---H
Confidence            346999999999999999999986677776 555544444333  2221       1110       112221132   1


Q ss_pred             hcCC-----CcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCC---CcccCCCcc-----ccc--ccccc-c-cCCcccc
Q 018048          135 LLKK-----EDSVVSTYRDHVHALSKGVPARAVMSELFGKATG---CCRGQGGSM-----HMF--SKEHN-L-LGGFAFI  197 (361)
Q Consensus       135 ~l~~-----~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g---~~~gd~G~~-----h~~--~~~~~-~-~~~~g~m  197 (361)
                      -|++     ++-+.-.-+.+.    ..+++..++..+...++.   +...++++.     ++.  ..|++ . .+.+|+|
T Consensus       357 ~Lrek~~~ne~~~~~~~~~~~----~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTM  432 (571)
T KOG1185|consen  357 ELREKDKQNEAAVEEKAAKKS----TPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTM  432 (571)
T ss_pred             HHHHHHHhhHHHHHHHhhccC----CCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhhhhccCCCcccccCCcccccc
Confidence            1211     111100001111    225666666666655551   334444431     111  11333 3 5889999


Q ss_pred             ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC--ccccccccc---
Q 018048          198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL--WAIGMSHLR---  272 (361)
Q Consensus       198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~--y~is~~~~~---  272 (361)
                      |-|++.|+++|++           .|++.|+|+.||++|...  ..|+.|+++|+|||++||.||+  |++.....+   
T Consensus       433 GVG~Gfalaaa~~-----------~P~~~V~~veGDsaFGfS--aME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~  499 (571)
T KOG1185|consen  433 GVGLGFALAAALA-----------APDRKVVCVEGDSAFGFS--AMELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQIS  499 (571)
T ss_pred             ccchhHHHHHHhh-----------CCCCeEEEEecCcccCcc--hhhHHHHHHhcCCeEEEEecCCcccccCcccHHHHh
Confidence            9999999999999           799999999999999988  8999999999999999998664  433221111   


Q ss_pred             -c-----------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          273 -A-----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       273 -q-----------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                       |           ..+.+|.+++++||..++.|+..  +++..+++++.   +.+++|++|.|.+.+.
T Consensus       500 e~~~~~~~p~~~l~~~~rY~~v~ka~G~kG~~v~t~--~el~~~l~~a~---q~~~~psvINVlI~p~  562 (571)
T KOG1185|consen  500 EQDPTLDLPPTALLANTRYDKVAKAFGGKGYFVSTV--EELLAALQQAC---QDTDKPSVINVLIGPT  562 (571)
T ss_pred             hcCcccCCCcccccccccHHHHHHHcCCCceeeCCH--HHHHHHHHHHH---hcCCCCeEEEEEeccc
Confidence             1           13568999999999999999844  47665555543   4566999999987553

>PRK05261 putative phosphoketolase; Provisional

Probab=99.62  E-value=5.7e-15  Score=157.36  Aligned_cols=202  Identities=19%  Similarity=0.241  Sum_probs=143.2

Q ss_pred             eceeeecCCCchhHHHHHHHhcCCC--cEEEcccCCcchhh--c----CC--------CCHHHH-HHHHhcCcCCCcccC
Q 018048          115 MFGFVHLYNGQEAVSTGFIKLLKKE--DSVVSTYRDHVHAL--S----KG--------VPARAV-MSELFGKATGCCRGQ  177 (361)
Q Consensus       115 ~~g~~~~~~GqEa~~vg~~~~l~~~--D~v~~~yR~~~~~l--~----~g--------~~~~~~-~~el~~~~~g~~~gd  177 (361)
                      ..|++.++.|+-.+.+.+-..++++  |.++-.--+|+...  +    .|        ++.++. |..++.+....  | 
T Consensus        48 ~~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~p--g-  124 (785)
T PRK05261         48 LLGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSFP--G-  124 (785)
T ss_pred             cCCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccCC--C-
Confidence            4588888888888887777777765  53343333454331  1    23        222221 33333333211  1 


Q ss_pred             CCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcch---HHHHHHhhhCCCC
Q 018048          178 GGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQF---FECLNMAALWKLP  254 (361)
Q Consensus       178 ~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~---~eeL~tA~~~~LP  254 (361)
                      +...|......++....|++|++++.|+|+|+.           +++.+|+|++|||++++|.+   ++..+++..+++.
T Consensus       125 g~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~-----------~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g  193 (785)
T PRK05261        125 GIPSHAAPETPGSIHEGGELGYSLSHAYGAAFD-----------NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDG  193 (785)
T ss_pred             CcCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc-----------CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCC
Confidence            222354433335556789999999999999987           68899999999999999863   5555556666666


Q ss_pred             -eEEEEEcCCccccccccccc-CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc-----------C---CCC
Q 018048          255 -IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-----------G---EGP  318 (361)
Q Consensus       255 -vi~VV~NN~y~is~~~~~q~-~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~-----------~---~gP  318 (361)
                       |+.|+.+|+|.|+.+...+. ...++.+++++||++.+.|||+|+.++++++++|++++.+           +   .+|
T Consensus       194 ~vLPIld~Ng~~Is~pt~~~~~~~e~l~~rf~g~Gw~~i~VDG~D~~av~~a~a~al~~~i~~i~~iq~~Ar~~~~~~~P  273 (785)
T PRK05261        194 AVLPILHLNGYKIANPTILARISDEELEALFRGYGYEPYFVEGDDPADMHQEMAAALDTAIEEIRAIQKEAREGGDTTRP  273 (785)
T ss_pred             CEEEEEEecCCcCCCCccccccCcHhHHHHHHHCCCeeEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence             78888899999999877553 4578999999999999999999999999987777765543           4   589


Q ss_pred             E--EEEEEEecCCC
Q 018048          319 T--LVECETYRFRG  330 (361)
Q Consensus       319 ~--lIev~t~R~~g  330 (361)
                      .  +|.++|....|
T Consensus       274 ~wp~Ii~rT~kG~g  287 (785)
T PRK05261        274 RWPMIVLRTPKGWT  287 (785)
T ss_pred             CceEEEEECCccCC
Confidence            9  99999988665

>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]

Probab=99.62  E-value=8.3e-15  Score=150.81  Aligned_cols=155  Identities=23%  Similarity=0.294  Sum_probs=121.4

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA  265 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~  265 (361)
                      +-..+|+||+|++.|+|.|+|.++....+.+++   -|..++|++|||.+++|..+|+..+|..++|. +|++..+|.+.
T Consensus       111 Ve~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~Is  190 (663)
T COG0021         111 VEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDIS  190 (663)
T ss_pred             eEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCce
Confidence            345689999999999999999998876654323   35789999999999999999999999999998 88888899877


Q ss_pred             cccccccccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCC-CCCCCC---
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSL-ADPDEL---  339 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~-~Dp~~y---  339 (361)
                      |....... ...|..++.+||||.++ .+||+|++++.+    |++.|++ .++|++|+|+|.-..|-.. .+...+   
T Consensus       191 iDG~~~~~-f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~----Ai~~Ak~~~dkPtlI~~kTiIG~Gsp~kegt~~~HGa  265 (663)
T COG0021         191 IDGDTSLS-FTEDVAKRFEAYGWNVIRVIDGHDLEAIDK----AIEEAKASTDKPTLIIVKTIIGKGSPNKEGTHKVHGA  265 (663)
T ss_pred             eccCcccc-cchhHHHHHHhcCCeEEEecCCCCHHHHHH----HHHHHHhcCCCCeEEEEEeeeecCCCCcCCCccccCC
Confidence            76544333 36789999999999999 788999887655    5555555 6799999999998877655 332221   


Q ss_pred             -CCHHHHHhHH
Q 018048          340 -RDPGEHLVLV  349 (361)
Q Consensus       340 -R~~~e~~~~~  349 (361)
                       -.++|++...
T Consensus       266 pLg~~ev~~~k  276 (663)
T COG0021         266 PLGEEEVAAAK  276 (663)
T ss_pred             CCCHHHHHHHH
Confidence             3556655443

>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]

Probab=99.60  E-value=2.5e-14  Score=146.52  Aligned_cols=206  Identities=20%  Similarity=0.234  Sum_probs=146.6

Q ss_pred             eceeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCcccccccccccc
Q 018048          115 MFGFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL  191 (361)
Q Consensus       115 ~~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~  191 (361)
                      -.|++.++.|--.+-+++...++ |.| +|+. .|....|.+..|..  +-|..++...     |-.|...-...++.+ 
T Consensus        40 ~GGHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKiLTGR~--e~f~tlRq~~-----GlsGf~~r~ESe~D~-  111 (627)
T COG1154          40 TGGHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKILTGRR--EQFDTLRQKD-----GLSGFPKREESEHDW-  111 (627)
T ss_pred             CCCccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHHhcCch--hhcchhhhcC-----CCCCCCCcccCCCcc-
Confidence            34888889998888888888887 555 6666 58888888877754  4444444331     112211111112222 


Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh-hCCCCeEEEEEcCCccccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSH  270 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~-~~~LPvi~VV~NN~y~is~~~  270 (361)
                      -+.|+-+.++++|+|.|.|...+       +.++.||+++|||++.-|+.+|+||.|. ..+-|+|+|+.+|+.+|+-..
T Consensus       112 f~~GHsSTSiSaalG~A~A~~~~-------g~~~~vvaVIGDGAlt~GmA~EALN~ag~~~~~~~iVILNDNeMSIs~nv  184 (627)
T COG1154         112 FGVGHSSTSISAALGMAKARDLK-------GEDRNVVAVIGDGALTGGMAFEALNNAGADLKSNLIVILNDNEMSISPNV  184 (627)
T ss_pred             cccCchHHHHHHHhhHHHHHHhc-------CCCCcEEEEECCccccchHHHHHHhhhhhccCCCEEEEEeCCCcccCCCc
Confidence            24578889999999999997776       5789999999999999999999999998 556789999999987776533


Q ss_pred             cc-----------c---c---C------------------Ccc-------hhhccccCCccEE-EEeCCCHHHHHHHHHH
Q 018048          271 LR-----------A---T---S------------------DPQ-------IYKKGPAFGMPGF-HVDGMDVLKVREVAKE  307 (361)
Q Consensus       271 ~~-----------q---~---~------------------~~d-------~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~  307 (361)
                      ..           .   .   .                  ..+       ...+.+.+|+.|+ .|||+|++++..    
T Consensus       185 Gal~~~L~~l~~~~~y~~~~~~~kk~l~~~~~~~~~~~~r~e~~~K~l~~~~~lFeelGf~YiGPiDGHni~~Li~----  260 (627)
T COG1154         185 GALSKHLARLRSGPFYQSLREGGKKVLSKVGPPLKRFAKRAEESIKGLLVPGTLFEELGFNYIGPIDGHNLEELIP----  260 (627)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhcccCchhhHHHhCCeeECCcCCCCHHHHHH----
Confidence            10           0   0   0                  000       0125667899999 799999887654    


Q ss_pred             HHHHHHcCCCCEEEEEEEecCCCCCCC--CCCCC
Q 018048          308 AIERARRGEGPTLVECETYRFRGHSLA--DPDEL  339 (361)
Q Consensus       308 Al~~ar~~~gP~lIev~t~R~~gHs~~--Dp~~y  339 (361)
                      +++.+++.++|+||+|.|.+..|-..+  ||..|
T Consensus       261 ~Lk~~kd~~gPvllHv~T~KGKGY~pAE~d~~~~  294 (627)
T COG1154         261 TLKNAKDLKGPVLLHVVTKKGKGYKPAEEDPIKY  294 (627)
T ss_pred             HHHHHhcCCCCEEEEEEecCCCCCChhhcChhhc
Confidence            566678899999999999998887655  44444

>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B

Probab=99.59  E-value=9.1e-15  Score=137.43  Aligned_cols=216  Identities=21%  Similarity=0.227  Sum_probs=132.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCC
Q 018048           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVP  158 (361)
Q Consensus        82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~  158 (361)
                      -.++.+|+.+|-..+   |   +++..  .-.+..|++.++.|--.+.+++...++ |.| +|+. .|....+.+..|-.
T Consensus        11 k~ls~~eL~~La~ei---R---~~ii~--~vs~~GGHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiLTGR~   82 (270)
T PF13292_consen   11 KKLSIEELEQLAQEI---R---EFIIE--TVSKTGGHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKILTGRR   82 (270)
T ss_dssp             TTS-GGGHHHHHHHH---H---HHHHH--HCTCCCSTHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHCTTTC
T ss_pred             HcCCHHHHHHHHHHH---H---HHHHH--HHhhcCCCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhccCcH
Confidence            455666666655432   2   22222  233445888888898888888988888 666 5565 47777777665532


Q ss_pred             HHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccC
Q 018048          159 ARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN  238 (361)
Q Consensus       159 ~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~  238 (361)
                        +-|..++..     .|-+|.......++. .-+.|+-+.++++|+|.|.|..++       +.+..||+++|||++.-
T Consensus        83 --~~f~TlRq~-----gGlSGF~~r~ES~~D-~f~~GHsstsiSaa~Gma~ar~l~-------~~~~~vVaVIGDGalt~  147 (270)
T PF13292_consen   83 --DRFHTLRQY-----GGLSGFPKRSESEYD-AFGAGHSSTSISAALGMAVARDLK-------GEDRKVVAVIGDGALTG  147 (270)
T ss_dssp             --CCGGGTTST-----TS--SS--TTT-TT---S--SSSS-HHHHHHHHHHHHHHH-------TS---EEEEEETTGGGS
T ss_pred             --HHhchhhhc-----CCcCCCCCcccCCCC-cccCCccHhHHHHHHHHHHHHHhc-------CCCCcEEEEECCcchhH
Confidence              112222111     112222211111222 234689999999999999998777       56889999999999999


Q ss_pred             cchHHHHHHhhhCCCCeEEEEEcCCccccccccc--------c--------c------------------------CCcc
Q 018048          239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------A--------T------------------------SDPQ  278 (361)
Q Consensus       239 g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~--------q--------~------------------------~~~d  278 (361)
                      |+.+|+||.|...+-++++|+.+|+..|+-....        .        .                        ... 
T Consensus       148 Gma~EALN~~g~~~~~liVILNDN~mSIs~nvGals~~L~~l~~~~~y~~~k~~~~~~l~~~~~~~~~~~r~~~s~K~~-  226 (270)
T PF13292_consen  148 GMAFEALNNAGHLKSNLIVILNDNEMSISPNVGALSKYLSKLRSSPTYNKLKEDVKSLLKKIPPIEEFAKRIKESLKGF-  226 (270)
T ss_dssp             HHHHHHHHHHHHHT-SEEEEEEE-SBSSSB--SSHCCC------------------------------------------
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCCcccCCCcchHHHHHHhccchhHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhhhh-
Confidence            9999999999999999999999998776542110        0        0                        000 


Q ss_pred             hhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          279 IYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       279 ~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      ...+.+.+|+.|+ .|||+|+.++.    ++++.+++-+||+||+|.|
T Consensus       227 ~~~lFe~LG~~Y~GPiDGHdl~~Li----~~l~~~K~~~gPvllHV~T  270 (270)
T PF13292_consen  227 SPNLFEELGFDYIGPIDGHDLEELI----EVLENAKDIDGPVLLHVIT  270 (270)
T ss_dssp             --CCCHHCT-EEEEEEETT-HHHHH----HHHHHHCCSSSEEEEEEE-
T ss_pred             hHHHHHHcCCeEEeccCCCCHHHHH----HHHHHHhcCCCCEEEEEeC
Confidence            1145667799999 89999988764    4666677889999999986

>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]

Probab=99.52  E-value=4.5e-14  Score=142.33  Aligned_cols=152  Identities=18%  Similarity=0.189  Sum_probs=106.4

Q ss_pred             CHHHHHHHHhcCcC--CCcccCCCcccccccc------ccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceE
Q 018048          158 PARAVMSELFGKAT--GCCRGQGGSMHMFSKE------HNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVT  227 (361)
Q Consensus       158 ~~~~~~~el~~~~~--g~~~gd~G~~h~~~~~------~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~V  227 (361)
                      +-+.++.++..-..  +++..+.|...+...+      ..+  .+-+|++||.+|+|+|+++|           .++|+|
T Consensus       364 tq~~~w~~~~~fl~p~dviiaetGtS~FG~~~~~lP~~~~~i~Q~lWGSIG~t~pAalGa~~A-----------~~drR~  432 (557)
T COG3961         364 TQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLPKGATFISQPLWGSIGYTLPAALGAALA-----------APDRRV  432 (557)
T ss_pred             cHHHHHHHHHhhCCCCCEEEEccccccccceeeecCCCCeEEcccchhhcccccHhhhhhhhc-----------CCCccE
Confidence            34555666555443  3555666665444322      222  36689999999999999999           789999


Q ss_pred             EEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCccccccccc------ccCCcchhhccccCCccEEEE----eCC
Q 018048          228 LAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLR------ATSDPQIYKKGPAFGMPGFHV----DGM  296 (361)
Q Consensus       228 v~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~------q~~~~d~~~~A~a~Gi~~~~V----dg~  296 (361)
                      |.|+||||+++.  .||+.+..+|+|| +|||+.|+||.|....+.      .....|+.++.++||+.....    ...
T Consensus       433 IL~iGDGs~QlT--vQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg~~~~~~~~~~~~~  510 (557)
T COG3961         433 ILFIGDGSLQLT--VQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTALPEAFGAKNGEAKFRATTG  510 (557)
T ss_pred             EEEEcCchhhhh--HHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhhhhhcCCCCceEEEeecCh
Confidence            999999999988  9999999999998 555555556765432222      123578999999999866543    333


Q ss_pred             CHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecC
Q 018048          297 DVLKVREVAKEAIERARR-GEGPTLVECETYRF  328 (361)
Q Consensus       297 D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~  328 (361)
                      +      .++.+++.+.+ .+++.+|||++.+.
T Consensus       511 ~------~l~~~~~~~~~~~~~i~lIEv~lp~~  537 (557)
T COG3961         511 E------ELALALDVAFANNDRIRLIEVMLPVL  537 (557)
T ss_pred             H------HHHHHHHHHhcCCCceEEEEEecCcc
Confidence            3      45566666655 45899999988653

>COG3962 Acetolactate synthase [Amino acid transport and metabolism]

Probab=99.47  E-value=3.1e-13  Score=134.40  Aligned_cols=117  Identities=18%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL  271 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~  271 (361)
                      .++++|||.+..++|+++|           .|++.|++++||||++|-  +.||.|+..++..|++++.+|. +++-+..
T Consensus       441 YgfSCMGYEiaG~lG~K~a-----------~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~-GyGCIn~  506 (617)
T COG3962         441 YGFSCMGYEIAGGLGAKAA-----------EPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNR-GYGCINR  506 (617)
T ss_pred             ecccccccccccccccccC-----------CCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCC-Ccchhhh
Confidence            5689999999999999988           789999999999999987  9999999999999999999886 5444332


Q ss_pred             cc--------------------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          272 RA--------------------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       272 ~q--------------------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      .|                    ....||++.|++||+..++|...  .    .|+.|++.+++..+++||++.|...
T Consensus       507 LQm~~Gg~sf~~~~r~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i--~----eL~aAL~~Ak~~~~ttvi~I~t~P~  577 (617)
T COG3962         507 LQMATGGASFNNLLRDTDHEEEILQVDFAAHAESYGAKAYKVGTI--E----ELEAALADAKASDRTTVIVIDTDPK  577 (617)
T ss_pred             hhhhcCcchhhhhhhhhcccCCCCcccHHHHHhhcCceeEecCCH--H----HHHHHHHHHHhCCCCEEEEEecCCc
Confidence            21                    34679999999999999999743  3    4677888999999999999999764

>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=4.2e-13  Score=137.02  Aligned_cols=132  Identities=27%  Similarity=0.380  Sum_probs=106.6

Q ss_pred             cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccc
Q 018048          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMS  269 (361)
Q Consensus       191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~  269 (361)
                      .-++|++|++++.|+|+|++.++..+      .+..|+|++|||..++|..+|++++|..++|. +|+|..||+.+++..
T Consensus       114 ~v~TG~lgQgis~a~GmA~~~k~~~k------~~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~  187 (632)
T KOG0523|consen  114 EVATGPLGQGISNAVGMAYAGKHLGK------ASNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGA  187 (632)
T ss_pred             eeccCCccchHHHHHHHHHHHHhhcc------ccceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCC
Confidence            35679999999999999999888742      37889999999999999999999999999999 667777777666654


Q ss_pred             cccccCCcchhh-ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048          270 HLRATSDPQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (361)
Q Consensus       270 ~~~q~~~~d~~~-~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (361)
                      +... ...|..+ +.++|||....|++.|++++..++.+|.   ...++|+.|-+.|...+|-.
T Consensus       188 t~~~-~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ka~~~a~---~~k~kpt~i~~~t~~g~G~~  247 (632)
T KOG0523|consen  188 TSLG-FDEDVYQLRFEAFGWNVIIVDGGDVDEIRKAIGKAK---SVKGKPTAIKATTFIGRGSP  247 (632)
T ss_pred             Cccc-ccccHHHHHHHHhCceEEEEcCcCHHHHHHHHhhhh---hccCCceeeeeeeeeecCcc
Confidence            4433 3456666 9999999999999999777665555543   23578999999998876644

>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase

Probab=99.45  E-value=2.2e-12  Score=136.53  Aligned_cols=195  Identities=14%  Similarity=0.137  Sum_probs=139.6

Q ss_pred             eceeeecCCCchhHHHHHHHhcC-CCc-EEEc-ccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCcccccccccccc
Q 018048          115 MFGFVHLYNGQEAVSTGFIKLLK-KED-SVVS-TYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL  191 (361)
Q Consensus       115 ~~g~~~~~~GqEa~~vg~~~~l~-~~D-~v~~-~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~  191 (361)
                      ..|++.++.|--.+-+++...++ |.| .|+. .|....|.+..|-. ++ |. . .+..    |-.|.......++.. 
T Consensus       115 ~GGHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKiLTGR~-~~-f~-~-Rq~~----GlsGf~~r~ES~~D~-  185 (701)
T PLN02225        115 TQKSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKVLTRRW-SA-IP-S-RQKN----GISGVTSQLESEYDS-  185 (701)
T ss_pred             cCCCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhHhcCCh-hh-cC-c-cccC----CcCCCCCCCCCCCCC-
Confidence            35888889999888889998888 566 5666 58888888877753 22 22 1 2221    222322211112222 


Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccc--
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMS--  269 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~--  269 (361)
                      -+.|+-+.++++|+|.|.|..++       +.++.||+++|||++.-|+.+|+||.|...+-++|+|+.+|+.+|+-.  
T Consensus       186 f~~GHssTSiSaalG~a~ardl~-------g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~livILNDN~mSi~~n~~  258 (701)
T PLN02225        186 FGTGHGCNSISAGLGLAVARDIK-------GKRDRVVAVIDNATITAGQAYEAMSNAGYLDSNMIVILNDSRHSLHPNME  258 (701)
T ss_pred             CCCChHHHHHHHHHHHHHHHHhc-------CCCCcEEEEEcCcchhhhhHHHHHhhhhccCCCEEEEEeCCCCCCCCCCC
Confidence            34588899999999999998776       467889999999999999999999999999999999999999887665  


Q ss_pred             ------ccc--------c------------------cC------------------CcchhhccccCCccEE-EEeCCCH
Q 018048          270 ------HLR--------A------------------TS------------------DPQIYKKGPAFGMPGF-HVDGMDV  298 (361)
Q Consensus       270 ------~~~--------q------------------~~------------------~~d~~~~A~a~Gi~~~-~Vdg~D~  298 (361)
                            ...        +                  .+                  .|.-..+.+.+|+.|+ .|||+|+
T Consensus       259 ~~~~~~vG~ls~~l~~l~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~lFe~lG~~Y~GpvDGHdi  338 (701)
T PLN02225        259 EGSKASISALSSIMSKIQSSKIFRKFRELAKAMTKRIGKGMYEWAAKVDEYARGMVGPTGSTLFEELGLYYIGPVDGHNI  338 (701)
T ss_pred             CccCCccchHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccCCCccCcHHHcCCeEECccCCCCH
Confidence                  100        0                  00                  0000135578899999 8999999


Q ss_pred             HHHHHHHHHHHHHHHcCC--CCEEEEEEEecCC
Q 018048          299 LKVREVAKEAIERARRGE--GPTLVECETYRFR  329 (361)
Q Consensus       299 ~~v~~al~~Al~~ar~~~--gP~lIev~t~R~~  329 (361)
                      .++..+    ++.+++.+  +|+||+|+|.+..
T Consensus       339 ~~Li~~----l~~~k~~~~~~PvlvHv~T~KGk  367 (701)
T PLN02225        339 EDLVCV----LREVSSLDSMGPVLVHVITEENR  367 (701)
T ss_pred             HHHHHH----HHHHHcCCCCCCEEEEEEecCCC
Confidence            887654    44555555  9999999998765

>COG3960 Glyoxylate carboligase [General function prediction only]

Probab=99.32  E-value=2.8e-12  Score=123.45  Aligned_cols=162  Identities=22%  Similarity=0.251  Sum_probs=123.9

Q ss_pred             CCCHHHHHHHHhcCcC-C-CcccCCCcc--------ccccccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          156 GVPARAVMSELFGKAT-G-CCRGQGGSM--------HMFSKEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       156 g~~~~~~~~el~~~~~-g-~~~gd~G~~--------h~~~~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      .+.|+++..|+..... + +.....|-.        |.+ +++++  .+..|++||.+|+|+|+..|           .|
T Consensus       369 p~kpqrvyeemn~~fgrd~~yvstiglsqia~aqflhv~-~pr~wincgqagplgwtipaalgv~~a-----------dp  436 (592)
T COG3960         369 PVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVF-KPRHWINCGQAGPLGWTIPAALGVCAA-----------DP  436 (592)
T ss_pred             CCCHHHHHHHHHhhcCCceeEEEeccHHHHhhhhhhhhc-CCcceeecCccCCcccccchhhceeec-----------CC
Confidence            4678888777655443 1 111112222        333 34444  47789999999999999999           89


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc----------------------CCcchhh
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT----------------------SDPQIYK  281 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~----------------------~~~d~~~  281 (361)
                      ++.+|++.||=.|+.-  .|||...+++++|-|+|+.||.| ++.+++.|+                      ...|-.+
T Consensus       437 ~r~vvalsgdydfqfm--ieelavgaq~k~pyihv~vnnay-lglirqaqr~f~mdy~v~laf~nin~~~~~gygvdhv~  513 (592)
T COG3960         437 KRNVVAISGDYDFQFL--IEELAVGAQFKIPYIHVLVNNAY-LGLIRQAQRAFDMDYCVQLAFENINSSEVNGYGVDHVK  513 (592)
T ss_pred             CCceEEeecCchHHHH--HHHHhhhhcccCceEEEEecchH-HHHHHHHHhcCCccceeeehhhccCCccccccCcccee
Confidence            9999999999999965  99999999999999999999986 355554332                      2357788


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                      .++++|++.++|-.++  ++..++.+|-.-..+..-|+++|++..|....++.
T Consensus       514 v~eglgckairv~~p~--e~a~af~~a~~lm~eh~vpvvve~ilervtnismg  564 (592)
T COG3960         514 VAEGLGCKAIRVFKPE--DIAPAFEQAKALMAQHRVPVVVEVILERVTNISMG  564 (592)
T ss_pred             ehhccCceeEEecChH--HhhHHHHHHHHHHHhcCCCeeeehHHHHhhccccc
Confidence            9999999999997655  66667777766666788999999999999888776

>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional

Probab=99.28  E-value=8.9e-11  Score=113.52  Aligned_cols=126  Identities=19%  Similarity=0.116  Sum_probs=98.2

Q ss_pred             ccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-cc
Q 018048          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WA  265 (361)
Q Consensus       188 ~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~  265 (361)
                      .+.....+.+|.+.++|.|.+.|.+..       +++..||++.|||++. .|  .+.|.-|...+.++++||.||+ |+
T Consensus        62 ~~~~~~~~~fg~~~a~a~Gi~~a~~~~-------~~~~~Vv~~~GDG~~~dIG--~~~L~~a~~r~~ni~~ivlDNe~Y~  132 (299)
T PRK11865         62 WNVPWIHVAFENAAAVASGIERAVKAL-------GKKVNVVAIGGDGGTADIG--FQSLSGAMERGHNILYLMYDNEAYM  132 (299)
T ss_pred             cccccchhhhcchHHHHHHHHHHHHHh-------cCCCeEEEEeCCchHhhcc--HHHHHHHHHcCCCeEEEEECCcccc
Confidence            344566789999999999999997664       3567899999999987 77  7999999999999999999998 54


Q ss_pred             ccccccc---------------------ccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          266 IGMSHLR---------------------ATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       266 is~~~~~---------------------q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      .+..+..                     .....|+.+++.++|++++ +++-.++.++.+++++    |.+.+||.+|++
T Consensus       133 nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~Ia~a~g~~YVA~~~~~~~~~l~~~i~~----A~~~~Gps~I~v  208 (299)
T PRK11865        133 NTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPLIMAAHGIPYVATASIGYPEDFMEKVKK----AKEVEGPAYIQV  208 (299)
T ss_pred             CCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHHHHHHcCCCEEEEEeCCCHHHHHHHHHH----HHhCCCCEEEEE
Confidence            3221111                     1124678899999999999 6677788877655555    456789999999


Q ss_pred             EEe
Q 018048          324 ETY  326 (361)
Q Consensus       324 ~t~  326 (361)
                      ...
T Consensus       209 ~sP  211 (299)
T PRK11865        209 LQP  211 (299)
T ss_pred             ECC
Confidence            874

>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=99.09  E-value=2.5e-10  Score=115.24  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=86.0

Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcC-Cccccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAIGMSH  270 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN-~y~is~~~  270 (361)
                      ..+|++|+.+|+++|+++|           .++++||.|+|||+|++.  .|++.|+.+|+||.++++.|| +|.+....
T Consensus       412 ~~wgsIG~svga~lG~a~a-----------~~e~rvilfiGDGs~qlT--vQeiStmir~gl~~~if~~NN~GYTIE~~I  478 (561)
T KOG1184|consen  412 MQWGSIGWSVGATLGYAQA-----------APEKRVILFIGDGSFQLT--VQEISTMIRWGLKPIIFLINNGGYTIEVEI  478 (561)
T ss_pred             EEEeeccccchhhhhhhhc-----------cCCceEEEEecCccceee--HHHHHHHHhcCCCcEEEEEeCCceEEEEee
Confidence            4578999999999999999           788999999999999988  999999999999966555555 56654433


Q ss_pred             cc----ccCCcchhhccccCCccE-----EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          271 LR----ATSDPQIYKKGPAFGMPG-----FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       271 ~~----q~~~~d~~~~A~a~Gi~~-----~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +.    ...+.|+.++.++||..-     .+|-...  +..++++.+.-  .+.+++.+|||...
T Consensus       479 H~~~Yn~I~~Wd~~~l~~afg~~~gk~~~~~v~~~~--e~~~~~~~~~~--~~~~~i~liEv~l~  539 (561)
T KOG1184|consen  479 HDGPYNDIQNWDYTALLEAFGAGEGKYETHKVRTEE--ELVEAIKDATF--EKNDKIRLIEVILP  539 (561)
T ss_pred             cCCCccccccchHHHHHHhhcCccceeEEeeeccch--HHHHHHhhhhh--cccCceEEEEEecC
Confidence            32    123578999999998655     2333222  33333343331  24678999999763

>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]

Probab=98.93  E-value=1.5e-07  Score=98.05  Aligned_cols=137  Identities=23%  Similarity=0.151  Sum_probs=107.2

Q ss_pred             cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccc
Q 018048          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMS  269 (361)
Q Consensus       191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~  269 (361)
                      .-.+.+||-|.-.||=.|.-.||...++-...+++.|+||.|||.+.++...+++..|++++|. ++|||..|...+..+
T Consensus       188 qFpTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgp  267 (887)
T COG2609         188 QFPTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGP  267 (887)
T ss_pred             ccCcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCc
Confidence            3456899999999999999999987665433788999999999999999999999999999998 999999887677665


Q ss_pred             ccccc-CCcchhhccccCCccEEEE-------------------------------------------------------
Q 018048          270 HLRAT-SDPQIYKKGPAFGMPGFHV-------------------------------------------------------  293 (361)
Q Consensus       270 ~~~q~-~~~d~~~~A~a~Gi~~~~V-------------------------------------------------------  293 (361)
                      ..... -...+..+.++.||.+++|                                                       
T Consensus       268 VrgngkiiqelE~~FrgAGW~VikviWg~~wd~ll~kd~~gkL~~~m~e~~dgdyqt~kakdGayvRehff~~~Pe~~aL  347 (887)
T COG2609         268 VRGNGKIIQELEGIFRGAGWNVIKVIWGRRWDELLAKDTGGKLRQLMNETVDGDYQTFKAKDGAYVREHFFGRYPETAAL  347 (887)
T ss_pred             ccCCchhHHHHHHHhccCCceEEEEEecccHHHHhcccCcchHHHHHHhcccchhhhhcccccHHHHHHHhccChHHHHH
Confidence            43321 1234666677777777766                                                       


Q ss_pred             --------------eCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEecCCCC
Q 018048          294 --------------DGMDVLKVREVAKEAIERARRGE-GPTLVECETYRFRGH  331 (361)
Q Consensus       294 --------------dg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R~~gH  331 (361)
                                    -|+|+..++++++.|    +..+ +|++|-++|.+.+|-
T Consensus       348 Va~~tD~diw~L~rGGHD~~ki~aA~~~A----~~~kg~PtvilA~TIKGygl  396 (887)
T COG2609         348 VADMTDDDIWALNRGGHDPEKVYAAFKKA----QEHKGRPTVILAKTIKGYGL  396 (887)
T ss_pred             HHhccHHHHHHHhcCCCCHHHHHHHHHHH----hcCCCCceEEEEeeeccccC
Confidence                          377888887766655    4444 899999999876654

>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]

Probab=98.86  E-value=2.9e-08  Score=96.17  Aligned_cols=117  Identities=20%  Similarity=0.177  Sum_probs=91.9

Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCC-cccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS  269 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDG-s~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~  269 (361)
                      ...+.-|-+++.|.|.++|           .++..||++.||| ++..|  .+.|.-+.+.|..|++||.||+ |+.+..
T Consensus        67 ~~hs~~gra~a~atGik~A-----------~~~l~Viv~gGDG~~~dIG--~~~l~h~~~Rn~dit~iv~DNevYgnTgg  133 (294)
T COG1013          67 WVHSLHGRAAAVATGIKLA-----------NPALSVIVIGGDGDAYDIG--GNHLIHALRRNHDITYIVVDNEVYGNTGG  133 (294)
T ss_pred             ceeeccCcchhhHHHHHHh-----------ccCCeEEEEecchhHhhhh--hHHHHHHHHcCCCeEEEEECCeecccCCC
Confidence            3456778899999999999           6788999999999 55599  8999999999999999999998 655432


Q ss_pred             ccccc-----------------CCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          270 HLRAT-----------------SDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       270 ~~~q~-----------------~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      +..-+                 ...|+..+|.++|.+++ ++.-.++.++.+.++    +|.+.+||.+|++.+
T Consensus       134 Q~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a~G~~yVAr~~~~~~~~l~~~i~----kA~~~~Gps~I~v~s  203 (294)
T COG1013         134 QASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMAAGATYVARASVGDPKDLTEKIK----KAAEHKGPSFIDVLS  203 (294)
T ss_pred             ccCCCCCCCceeeecCCCCCcCCCCCHHHHHHHCCCCeEEEecccCHHHHHHHHH----HHHhccCCeEEEEec
Confidence            21111                 22388889999999998 777777777655444    455677999999976

>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria

Probab=98.74  E-value=8e-09  Score=101.08  Aligned_cols=104  Identities=21%  Similarity=0.298  Sum_probs=72.4

Q ss_pred             ccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh---hC-CC----CeEEEEEcCCcc
Q 018048          194 FAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA---LW-KL----PIVFVVENNLWA  265 (361)
Q Consensus       194 ~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~---~~-~L----Pvi~VV~NN~y~  265 (361)
                      -|-+||++..|.|+++-           +||.+|+|++|||.+.+|.    +.++-   .+ +-    -|+=|+.=|+|.
T Consensus       139 GGELGYaLshA~GA~~D-----------nPdliv~~vvGDGEaETGp----lA~sWh~~kflnP~~dGaVLPILhLNG~K  203 (379)
T PF09364_consen  139 GGELGYALSHAFGAVFD-----------NPDLIVACVVGDGEAETGP----LAASWHSNKFLNPATDGAVLPILHLNGYK  203 (379)
T ss_dssp             -SSTS-HHHHHHHHHTT------------TT-EEEEEEETTGGGSHH----HHHHGGGGGSS-TTTS-EEEEEEEE-SBS
T ss_pred             CcchhhHHHHHhhcccC-----------CCCeEEEEEecCCcccCCc----ccccccccceeCcccCceeeceEEecCcc
Confidence            48999999999999997           7999999999999999984    33332   22 21    155555669999


Q ss_pred             cccccccc-cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHH
Q 018048          266 IGMSHLRA-TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA  312 (361)
Q Consensus       266 is~~~~~q-~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~a  312 (361)
                      |+-++-.. ....++.++.++||+.-+.|++.|+.++..++..+++++
T Consensus       204 I~~pTil~r~~~~eL~~lf~G~Gy~p~~Veg~dp~~~h~~ma~ald~a  251 (379)
T PF09364_consen  204 ISNPTILARMSDEELEALFRGYGYEPIFVEGDDPADMHQAMAAALDWA  251 (379)
T ss_dssp             SSSB-HHHHS-HHHHHHHHHHTTEEEEEEE---HHHHHHHHHHHHHHH
T ss_pred             ccCCeEeeecCHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHHHH
Confidence            98776433 245679999999999999999999999988776665543

PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.

>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]

Probab=98.28  E-value=3.2e-06  Score=87.94  Aligned_cols=157  Identities=26%  Similarity=0.284  Sum_probs=104.7

Q ss_pred             chhhcCCCCHHHHHHHHhcCcC---CCcccCCCcccccc-ccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          150 VHALSKGVPARAVMSELFGKAT---GCCRGQGGSMHMFS-KEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       150 ~~~l~~g~~~~~~~~el~~~~~---g~~~gd~G~~h~~~-~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      ...+.-|.+....+..+.....   ....+|-|-+.+.- ++.+....+-.||.++..|-|+.++            ..+
T Consensus       379 pP~lC~GCPHr~sf~~~k~~~~~~~~~~~~DIGCytlg~~~P~~~~d~t~~mGssig~a~g~~~~------------~~k  446 (640)
T COG4231         379 PPALCPGCPHRPSFYALKKAAAELGGHPSGDIGCYTLGILPPLNTVDTTTMMGSSIGIAGGLSFA------------STK  446 (640)
T ss_pred             CCcCCCCCCCchhhHHHHHHHHhhCCCCCCCcceeecccCCCcchhhhhhhccchhhhccccccc------------cCC
Confidence            3445556665555544433222   11245666433332 2344445566889999999999987            348


Q ss_pred             eEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-c----------cCCcchhhccccCCccEEE-
Q 018048          226 VTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-A----------TSDPQIYKKGPAFGMPGFH-  292 (361)
Q Consensus       226 ~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-q----------~~~~d~~~~A~a~Gi~~~~-  292 (361)
                      ++|+++|||+|. .|  ..+|..|+-.+.+++++|.+|.+.--+-.|. -          ....++.++.++.|+..+. 
T Consensus       447 ~~va~iGDsTF~HsG--i~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v~~  524 (640)
T COG4231         447 KIVAVIGDSTFFHSG--ILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDVET  524 (640)
T ss_pred             ceEEEeccccccccC--cHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceeeec
Confidence            899999999999 56  7789999999999999999998532111110 0          1235788899999999885 


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECE  324 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~  324 (361)
                      ||-.|+.++    .++++++++..||.+|-.+
T Consensus       525 vdp~~~~~~----~~~~keale~~gpsViiak  552 (640)
T COG4231         525 VDPYDVKEL----SEAIKEALEVPGPSVIIAK  552 (640)
T ss_pred             cCCcchHHH----HHHHHHHhcCCCceEEEEc
Confidence            555666655    4556666778899988543

>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]

Probab=98.13  E-value=4.1e-06  Score=86.14  Aligned_cols=113  Identities=23%  Similarity=0.255  Sum_probs=82.7

Q ss_pred             ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcC-Cccc-ccccccc--
Q 018048          198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN-LWAI-GMSHLRA--  273 (361)
Q Consensus       198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN-~y~i-s~~~~~q--  273 (361)
                      -.-++-|+|++.|            ..+++|.++||=||-.-  ...|........|+++||.|| |-+| ++-.+.+  
T Consensus       425 DG~vSTA~Gi~~a------------~~~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~  490 (566)
T COG1165         425 DGTVSTALGIARA------------TQKPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSE  490 (566)
T ss_pred             chhHHHHhhhhhh------------cCCceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCc
Confidence            3456889999998            45679999999999854  456777888888966666655 4333 2211111  


Q ss_pred             ------c---CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          274 ------T---SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       274 ------~---~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                            .   ...||+..|+.||+.+.++++.+      .++++++.+....|-.|||++|.|..+
T Consensus       491 ~~fe~~F~tPh~ldF~~la~~y~l~y~~~~s~~------~l~~~~~~~~~~~g~~viEvkt~r~~~  550 (566)
T COG1165         491 PVFERLFGTPHGLDFAHLAATYGLEYHRPQSWD------ELGEALDQAWRRSGTTVIEVKTDRSDG  550 (566)
T ss_pred             chHHHhcCCCCCCCHHHHHHHhCccccccCcHH------HHHHHHhhhccCCCcEEEEEecChhHH
Confidence                  1   24689999999999999998776      567777777767789999999988543

>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes

Probab=98.09  E-value=1.6e-05  Score=78.77  Aligned_cols=98  Identities=12%  Similarity=0.103  Sum_probs=72.9

Q ss_pred             CCceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc----------------ccCCcchhhccc
Q 018048          223 CDHVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------------ATSDPQIYKKGP  284 (361)
Q Consensus       223 ~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~----------------q~~~~d~~~~A~  284 (361)
                      ++..||++.|||.. ..|  .+.|.-+...+.+|++||.||. |+.+..+..                .....|+..++.
T Consensus       150 ~~~~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~  227 (365)
T cd03377         150 VKKSVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAM  227 (365)
T ss_pred             cccceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHH
Confidence            44689999999955 488  8899999999999999999998 654321110                112358888999


Q ss_pred             cCCccEE-EEeC-CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          285 AFGMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       285 a~Gi~~~-~Vdg-~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ++|.+++ ++.- .++.++.+.++    +|.+.+||.+|++.+.
T Consensus       228 a~g~~YVA~~s~~~~~~~~~~~i~----eA~~~~Gps~I~v~sP  267 (365)
T cd03377         228 SYGNVYVAQIALGANDNQTLKAFR----EAEAYDGPSLIIAYSP  267 (365)
T ss_pred             HcCCCEEEEEecccCHHHHHHHHH----HHhcCCCCEEEEEEcc
Confidence            9999998 5544 47777655554    4556799999999874

This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra

>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]

Probab=98.01  E-value=1.7e-05  Score=83.27  Aligned_cols=175  Identities=19%  Similarity=0.226  Sum_probs=106.4

Q ss_pred             eceeeecCCCchhHHHHHHHhcCCCc--EEEcccCCcchhh-c-----CC-CC---H-----HHHHHHHhcCcCCCcccC
Q 018048          115 MFGFVHLYNGQEAVSTGFIKLLKKED--SVVSTYRDHVHAL-S-----KG-VP---A-----RAVMSELFGKATGCCRGQ  177 (361)
Q Consensus       115 ~~g~~~~~~GqEa~~vg~~~~l~~~D--~v~~~yR~~~~~l-~-----~g-~~---~-----~~~~~el~~~~~g~~~gd  177 (361)
                      ..|++.++.|+--+.+.....++++|  +++-.-.+|+... .     .| .+   |     ++=|..|+.+....  |.
T Consensus        59 ~lGHwGt~pg~s~~Y~H~nr~i~~~d~~~~yv~GpGHg~~~~~~~~yLeGtys~~yp~~s~d~~Gm~rL~~qFs~P--gG  136 (793)
T COG3957          59 LLGHWGTQPGLSFIYAHLNRLISKYDANMAYVMGPGHGGPAIVANTYLEGTYSEMYPDISQDEEGLNRLFKQFSFP--GG  136 (793)
T ss_pred             hcccccCCCCchhhhhhhhHHHHhhCcceEEEecCCCCcceeeeccccCCccccccccccccHHHHHHHHHhccCC--CC
Confidence            34788888888877777766666655  3332333444321 0     11 00   0     00122232222111  11


Q ss_pred             CCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhh----CCC
Q 018048          178 GGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAAL----WKL  253 (361)
Q Consensus       178 ~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~----~~L  253 (361)
                      -+ .|+...--+...--|.+||++..|.|+++-           .|+.++.|++|||....|.    +.|...    ++.
T Consensus       137 i~-SH~~petPGsIhEGGeLGy~l~ha~gAa~d-----------~Pdli~~~vvGDGeaetgp----latsWhs~kf~np  200 (793)
T COG3957         137 IG-SHVAPETPGSIHEGGELGYALSHAYGAAFD-----------NPDLIVACVVGDGEAETGP----LATSWHSNKFLNP  200 (793)
T ss_pred             cc-cccCCCCCCccCcCcchhHHHHHHHHhhcC-----------CCCcEEEEEecccccccCc----cccccccccccCc
Confidence            22 244332222333448999999999999997           8999999999999877774    333322    222


Q ss_pred             C----eEEEEEcCCccccccccccc-CCcchhhccccCCccEEEEeCCCHHHHHHHHHH
Q 018048          254 P----IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKE  307 (361)
Q Consensus       254 P----vi~VV~NN~y~is~~~~~q~-~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~  307 (361)
                      +    |+=|+.=|+|.|+-++...+ +..++.++.++||+.-+.|+|.|+.++.+....
T Consensus       201 ~~dGavLPIL~lNGykI~npT~lar~s~~el~~~f~G~Gy~p~~veg~d~~d~hq~mAa  259 (793)
T COG3957         201 ARDGAVLPILHLNGYKIENPTVLARISDEELKALFEGYGYEPVFVEGADPADMHQLMAA  259 (793)
T ss_pred             cccCceeeEEEecceeccCceeeeecChHHHHHHHhhCCCceeEecCCChHHhhhhHHH
Confidence            2    55556669999977654433 456799999999999999999898885544433

>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=97.94  E-value=3.7e-05  Score=86.26  Aligned_cols=155  Identities=17%  Similarity=0.093  Sum_probs=102.0

Q ss_pred             chhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEE
Q 018048          150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLA  229 (361)
Q Consensus       150 ~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~  229 (361)
                      ...+..|++....+. +.  ......+|.|-+.+...+.+...++..||.....++|.+.+           ..++.||+
T Consensus       426 ~P~~C~GCPH~~s~k-~~--~~~~~~gdIGC~tl~~~~~~~~~~~~~MG~~g~~~~G~a~~-----------~~~~~v~a  491 (1159)
T PRK13030        426 TPYFCSGCPHNTSTK-VP--EGSIAQAGIGCHFMASWMDRDTTGLTQMGGEGVDWIGHAPF-----------TETKHVFQ  491 (1159)
T ss_pred             CCCcCCCCCCchhhc-cC--CCCEeecCcCHHHHhhccccccceeeccCccchhhceeccc-----------cCCCCEEE
Confidence            344556776655541 11  11234566665444443334455678999999999999987           34567999


Q ss_pred             EECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc--CCcchhh---ccccCCccEEEEeCCCHHH---
Q 018048          230 FFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT--SDPQIYK---KGPAFGMPGFHVDGMDVLK---  300 (361)
Q Consensus       230 ~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~--~~~d~~~---~A~a~Gi~~~~Vdg~D~~~---  300 (361)
                      ++|||.|. .|  +-+|--|+..+.+++++|.+|.. ..| +..|.  ...++.+   ..++.|++.+.|-..|+.+   
T Consensus       492 ~iGDgTf~HSG--~~al~~AV~~~~nit~~IL~N~~-tAM-TGgQp~~g~i~v~~i~~~~~a~Gv~~v~vvsddp~~~~~  567 (1159)
T PRK13030        492 NLGDGTYFHSG--SLAIRQAVAAGANITYKILYNDA-VAM-TGGQPVDGSISVPQIARQVEAEGVSRIVVVSDEPEKYRG  567 (1159)
T ss_pred             EeccchhhhcC--HHHHHHHHhcCCCeEEEEEeCCc-ccc-cCCCCCCCCCCHHHHHHHHHhCCCcEEEEecCChhhccc
Confidence            99999999 66  77999999999999999999983 233 22222  2344555   7779999999876555554   


Q ss_pred             --HH--------HHHHHHHHHHH-cCCCCEEEEE
Q 018048          301 --VR--------EVAKEAIERAR-RGEGPTLVEC  323 (361)
Q Consensus       301 --v~--------~al~~Al~~ar-~~~gP~lIev  323 (361)
                        +.        +.+. ++++++ +.+||++|-.
T Consensus       568 ~~~~~~~~v~~r~~l~-~vq~~l~~~~GvsViI~  600 (1159)
T PRK13030        568 HHLPAGVTVHHRDELD-AVQRELRETPGVTVLIY  600 (1159)
T ss_pred             cccCCCcccccHHHHH-HHHHHHhcCCCcEEEEE
Confidence              22        2233 333333 6778888754

>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated

Probab=97.84  E-value=8e-05  Score=83.54  Aligned_cols=134  Identities=22%  Similarity=0.146  Sum_probs=94.6

Q ss_pred             cccCCCccccccc-cccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhC
Q 018048          174 CRGQGGSMHMFSK-EHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALW  251 (361)
Q Consensus       174 ~~gd~G~~h~~~~-~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~  251 (361)
                      ..+|.|-+.+... +.+. .++..||.....++|.+.+           ..++.||+++|||.|. .|  +-+|..|+..
T Consensus       460 ~~~dIGChtl~~~~p~~~-~~~~~MG~eg~~~~G~a~f-----------~~~~hv~a~iGDgTffHSG--~~al~~AV~~  525 (1165)
T PRK09193        460 ALAGIGCHYMATWMDRNT-STFTQMGGEGVPWIGQAPF-----------TDEKHVFQNLGDGTYFHSG--LLAIRAAVAA  525 (1165)
T ss_pred             EecCcChhhhccCCCCCC-CeeeccCCcchhhceeccc-----------cCCCcEEEEeccccchhcC--HHHHHHHHhc
Confidence            4455564444332 3333 5778999999999998876           3457799999999999 66  8889999999


Q ss_pred             CCCeEEEEEcCCcccccccccc-----cCCcchhhccccCCccEEEEeCCCHHHHHHH--------------HHHHHHHH
Q 018048          252 KLPIVFVVENNLWAIGMSHLRA-----TSDPQIYKKGPAFGMPGFHVDGMDVLKVREV--------------AKEAIERA  312 (361)
Q Consensus       252 ~LPvi~VV~NN~y~is~~~~~q-----~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a--------------l~~Al~~a  312 (361)
                      +.+|+++|..|. ...|. ..|     ...+++....++.|++-+.|-..|+.+....              ++...+..
T Consensus       526 ~~nit~~IL~N~-~vAMT-GgQ~~~g~~~~~~i~~~~~a~GV~~v~vv~ddp~~~~~~~~~~~~v~~~~R~~l~~vq~~l  603 (1165)
T PRK09193        526 GVNITYKILYND-AVAMT-GGQPVDGGLSVPQITRQLAAEGVKRIVVVTDEPEKYDGVARLAPGVTVHHRDELDAVQREL  603 (1165)
T ss_pred             CCCeEEEEEeCC-ccccc-CCCCCCCCcchhhHHHHHHhCCCCEEEEeCCChhhhhhccccCcCcccccHHHHHHHHHHH
Confidence            999999999998 32332 122     2457888999999999998866666655322              33332233


Q ss_pred             HcCCCCEEEEE
Q 018048          313 RRGEGPTLVEC  323 (361)
Q Consensus       313 r~~~gP~lIev  323 (361)
                      ++.+|+++|-.
T Consensus       604 r~~~GvsViI~  614 (1165)
T PRK09193        604 REIPGVTVLIY  614 (1165)
T ss_pred             hcCCCcEEEEE
Confidence            36788888754

>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional

Probab=97.68  E-value=0.00016  Score=81.12  Aligned_cols=135  Identities=19%  Similarity=0.119  Sum_probs=91.0

Q ss_pred             cccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCccc-CcchHHHHHHhhhCC
Q 018048          174 CRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCN-NGQFFECLNMAALWK  252 (361)
Q Consensus       174 ~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~  252 (361)
                      ..+|.|-+.+.....+...++..||.....++|.+-+           ..++.||+++|||.|. .|  +-+|..|+..+
T Consensus       474 ~~~dIGChtl~~~~~~~~~~~~~MGgeg~~~~G~a~f-----------~~~~hv~aniGDgTffHSG--~~alr~AV~~~  540 (1186)
T PRK13029        474 ALAGIGCHYMAMWMDRSTEGFSQMGGEGVAWIGQMPF-----------SRRRHVFQNLGDGTYFHSG--LLAIRQAIAAG  540 (1186)
T ss_pred             EecCcCHHHHhhccccccceeeccCcchhhheeeccc-----------CCCCCEEEEeccccchhcC--HHHHHHHHhcC
Confidence            4455554444333333355678999999999999877           3456799999999999 66  78899999999


Q ss_pred             CCeEEEEEcCCccccccccccc-----CCcchhhccccCCccEEEEeCCCHHHHH--------------HHHHHHHHHHH
Q 018048          253 LPIVFVVENNLWAIGMSHLRAT-----SDPQIYKKGPAFGMPGFHVDGMDVLKVR--------------EVAKEAIERAR  313 (361)
Q Consensus       253 LPvi~VV~NN~y~is~~~~~q~-----~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~--------------~al~~Al~~ar  313 (361)
                      .+|+++|.+|. ...+ +..|.     ..+.+....++.|+.-+.|-..|+..+.              +.++...+..+
T Consensus       541 ~nit~kIL~N~-avAM-TGgQp~~G~~~v~~i~~~~~a~GV~~v~vv~d~p~~~~~~~~~~~gv~~~~R~~l~~vq~~lr  618 (1186)
T PRK13029        541 VNITYKILYND-AVAM-TGGQPVDGVLTVPQIARQVHAEGVRRIVVVTDEPGKYRGVARLPAGVTVHHRDELDAVQRELR  618 (1186)
T ss_pred             CCEEEEEEeCc-chhc-cCCCCCCCcCCHHHHHHHHHhCCccEEEEeCCCccccccccccCCccccccHHHHHHHHHHHh
Confidence            99999999998 3333 22222     2233444778999998877554554442              33333333334


Q ss_pred             cCCCCEEEEE
Q 018048          314 RGEGPTLVEC  323 (361)
Q Consensus       314 ~~~gP~lIev  323 (361)
                      +.+|+++|-.
T Consensus       619 ~~~GvsViI~  628 (1186)
T PRK13029        619 EVPGVSVLIY  628 (1186)
T ss_pred             cCCCcEEEEE
Confidence            6788888754

>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric

Probab=97.09  E-value=0.002  Score=73.31  Aligned_cols=96  Identities=17%  Similarity=0.197  Sum_probs=72.0

Q ss_pred             ceEEEEECCCcc-cCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc----------------cccCCcchhhccccC
Q 018048          225 HVTLAFFGDGTC-NNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------------RATSDPQIYKKGPAF  286 (361)
Q Consensus       225 ~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~----------------~q~~~~d~~~~A~a~  286 (361)
                      .-||++.|||.. ..|  .+.|.-+.+.+.+|.+||.||. |+.+..+.                ......|+..+|.++
T Consensus       952 ~sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~ 1029 (1165)
T TIGR02176       952 KSVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTY 1029 (1165)
T ss_pred             ceeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHC
Confidence            479999999955 488  8889999999999999999998 55432111                011245788899999


Q ss_pred             CccEE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          287 GMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       287 Gi~~~-~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      |.+++ ++. +.++.++.+    ++.+|.+.+||.+|++.+.
T Consensus      1030 g~~yvA~~~~~~~~~~~~~----~~~~A~~~~G~s~i~~~~p 1067 (1165)
T TIGR02176      1030 GYVYVAQVSMGANMQQTLK----AFREAEAYDGPSIVIAYSP 1067 (1165)
T ss_pred             CCCEEEEEecccCHHHHHH----HHHHHHcCCCCEEEEEECC
Confidence            99998 665 457777655    4455567899999999874

This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.

>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor

Probab=96.85  E-value=0.0098  Score=52.84  Aligned_cols=107  Identities=18%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEE--CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcc
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ  278 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~--GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d  278 (361)
                      .-+|.|.+.+            .+++.+|++  |=|..+ .  ...|..|...++|+|+|+-.-... ...........|
T Consensus        52 ~~~A~g~ar~------------~g~~~v~~~~~GpG~~n-~--~~~l~~A~~~~~Pvl~i~g~~~~~-~~~~~~~q~~~d  115 (172)
T PF02776_consen   52 AFMADGYARA------------TGRPGVVIVTSGPGATN-A--LTGLANAYADRIPVLVITGQRPSA-GEGRGAFQQEID  115 (172)
T ss_dssp             HHHHHHHHHH------------HSSEEEEEEETTHHHHT-T--HHHHHHHHHTT-EEEEEEEESSGG-GTTTTSTTSSTH
T ss_pred             HHHHHHHHHh------------hccceEEEeecccchHH-H--HHHHhhcccceeeEEEEecccchh-hhcccccccchh
Confidence            3456677666            244444444  444443 2  667888999999999999877622 111111122347


Q ss_pred             hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHH-HcCCCCEEEEEEE
Q 018048          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERA-RRGEGPTLVECET  325 (361)
Q Consensus       279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~a-r~~~gP~lIev~t  325 (361)
                      ...+++.+.-...+++..+  ++.+.+++|+..+ ....||+.|++..
T Consensus       116 ~~~~~~~~~k~~~~v~~~~--~~~~~~~~A~~~a~~~~~gPv~l~ip~  161 (172)
T PF02776_consen  116 QQSLFRPVTKWSYRVTSPD--DLPEALDRAFRAATSGRPGPVYLEIPQ  161 (172)
T ss_dssp             HHHHHGGGSSEEEEECSGG--GHHHHHHHHHHHHHHCSTSEEEEEEEH
T ss_pred             hcchhccccchhcccCCHH--HHHHHHHHHHHHhccCCCccEEEEcCh
Confidence            7778888887888887555  8888999999999 6678999999854

It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....

>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes

Probab=96.80  E-value=0.0073  Score=51.87  Aligned_cols=105  Identities=19%  Similarity=0.188  Sum_probs=67.6

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEE-CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcc
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFF-GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQ  278 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~-GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d  278 (361)
                      ...+|.|++.+           .. ..+++++ |.|..+ .  .+.|..|...++||++|+...+.. .... ......+
T Consensus        47 a~~~A~G~a~~-----------~~-~~v~~~~~gpg~~~-~--~~~l~~a~~~~~Pvl~i~~~~~~~-~~~~-~~~q~~~  109 (154)
T cd06586          47 AAGAAAGYARA-----------GG-PPVVIVTSGTGLLN-A--INGLADAAAEHLPVVFLIGARGIS-AQAK-QTFQSMF  109 (154)
T ss_pred             HHHHHHHHHHh-----------hC-CEEEEEcCCCcHHH-H--HHHHHHHHhcCCCEEEEeCCCChh-hhcc-CcccccC
Confidence            34567787777           33 4444444 888764 2  677888889999999999766522 1111 1112233


Q ss_pred             hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          279 IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       279 ~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      ...+.+.  ++...+.-+++.+..+.+.+|++.+....||++|++
T Consensus       110 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~a~~~~gPv~l~i  152 (154)
T cd06586         110 DLGMYRS--IPEANISSPSPAELPAGIDHAIRTAYASQGPVVVRL  152 (154)
T ss_pred             HHHHHHH--hhheEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEc
Confidence            4444443  444444445666888888999998888889999986

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca

>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit

Probab=96.78  E-value=0.013  Score=51.82  Aligned_cols=108  Identities=12%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh-hCCCCeEEEEEcCCcccccccccccCC
Q 018048          198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA-LWKLPIVFVVENNLWAIGMSHLRATSD  276 (361)
Q Consensus       198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~-~~~LPvi~VV~NN~y~is~~~~~q~~~  276 (361)
                      +.+..+|.|+.++            .++.++|+.+=|-.   .....|..|. ..++|+++|+-.-+ ..+.....|...
T Consensus        44 e~aa~~aAg~~~~------------~~~~~v~~~~sG~g---n~~~~l~~a~~~~~~Pvl~i~g~rg-~~~~~~~~q~~~  107 (157)
T TIGR03845        44 EEGVGICAGAYLA------------GKKPAILMQSSGLG---NSINALASLNKTYGIPLPILASWRG-VYKEKIPAQIPM  107 (157)
T ss_pred             HHHHHHHHHHHHh------------cCCcEEEEeCCcHH---HHHHHHHHHHHcCCCCEEEEEeccC-CCCCCCccccch
Confidence            3345556666654            45677888888833   3477888998 99999999996554 111111111111


Q ss_pred             cchhh-ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEE
Q 018048          277 PQIYK-KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECE  324 (361)
Q Consensus       277 ~d~~~-~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~  324 (361)
                      ..+.+ ....++++...++.  ++++ .++++|++.+.+.++|+.|-+.
T Consensus       108 g~~~~~~l~~~~i~~~~i~~--~e~~-~~i~~A~~~a~~~~gPv~il~~  153 (157)
T TIGR03845       108 GRATPKLLDTLGIPYTIPRE--PEEA-KLIEKAISDAYENSRPVAALLD  153 (157)
T ss_pred             hhhhHHHHHHcCCCeEEeCC--HHHH-HHHHHHHHHHHhCCCCEEEEEe
Confidence            11111 11335668888865  5588 8999999999999999998763

This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).

>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX

Probab=96.78  E-value=0.009  Score=53.00  Aligned_cols=94  Identities=14%  Similarity=0.027  Sum_probs=65.8

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|...++|+++|.-+.....  .........|..++++.+--...+|+  ++.++.++
T Consensus        65 ~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~~~--~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~  137 (164)
T cd07039          65 GVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPTDE--LGTDYFQEVDLLALFKDVAVYNETVT--SPEQLPEL  137 (164)
T ss_pred             EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcccc--cCCCCCcccCHHHHHHHhhcEEEEeC--CHHHHHHH
Confidence            44555557777662   5689999999999999987665221  11111223466677777766666776  55588889


Q ss_pred             HHHHHHHHHcCCCCEEEEEEE
Q 018048          305 AKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       305 l~~Al~~ar~~~gP~lIev~t  325 (361)
                      +++|++.++...||+.|++-.
T Consensus       138 i~~A~~~a~~~~GPV~l~iP~  158 (164)
T cd07039         138 LDRAIRTAIAKRGVAVLILPG  158 (164)
T ss_pred             HHHHHHHHhcCCCCEEEEeCh
Confidence            999999998888999999843

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ

>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins

Probab=96.74  E-value=0.0081  Score=52.08  Aligned_cols=107  Identities=17%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      +.-+|.|++++           ..+..+++.+..-++...  ...|..|...++|+|+|+-+.... ... .......|.
T Consensus        46 A~~~A~g~~~~-----------~~~~~v~~~~~gpG~~n~--~~~l~~A~~~~~Pll~i~~~~~~~-~~~-~~~~q~~d~  110 (155)
T cd07035          46 AVGMADGYARA-----------TGKPGVVLVTSGPGLTNA--VTGLANAYLDSIPLLVITGQRPTA-GEG-RGAFQEIDQ  110 (155)
T ss_pred             HHHHHHHHHHH-----------HCCCEEEEEcCCCcHHHH--HHHHHHHHhhCCCEEEEeCCCccc-ccc-CCcccccCH
Confidence            34556666666           222334444424444433  778999999999999998766511 111 111112344


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev  323 (361)
                      ..+.+.+-....+++  ++.++.+.+.+|++.+... +||+.|++
T Consensus       111 ~~~~~~~~~~~~~i~--~~~~~~~~i~~A~~~a~~~~~gPv~l~i  153 (155)
T cd07035         111 VALFRPITKWAYRVT--SPEEIPEALRRAFRIALSGRPGPVALDL  153 (155)
T ss_pred             HHHHHHHhceEEEcC--CHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence            555555544455664  5568888999999999877 79999987

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio

>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins

Probab=96.26  E-value=0.025  Score=49.98  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=62.0

Q ss_pred             eEEEEE--CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-ccccc-ccc-c--CC-cchhhccccCCccEEEEeCCC
Q 018048          226 VTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH-LRA-T--SD-PQIYKKGPAFGMPGFHVDGMD  297 (361)
Q Consensus       226 ~Vv~~~--GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~-~~q-~--~~-~d~~~~A~a~Gi~~~~Vdg~D  297 (361)
                      +.+|++  |=|..+.   ...|..|...+.|+|+|+-+.... .+... ..+ .  .. .|...+.+.+--...+|.  +
T Consensus        60 ~gv~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~--~  134 (162)
T cd07038          60 LGALVTTYGVGELSA---LNGIAGAYAEHVPVVHIVGAPSTKAQASGLLLHHTLGDGDFDVFLKMFEEITCAAARLT--D  134 (162)
T ss_pred             CEEEEEcCCccHHHH---HHHHHHHHHcCCCEEEEecCCCccccccccceeecccccchHHHHHHHHhheeEEEEeC--C
Confidence            444444  6665552   668999999999999998765421 11100 000 0  11 145666666666677775  4


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          298 VLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      +.++.+.+++|++.+..++||+.|++
T Consensus       135 ~~~i~~~v~~A~~~a~s~~gPV~l~i  160 (162)
T cd07038         135 PENAAEEIDRVLRTALRESRPVYIEI  160 (162)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence            55888899999999999889999987

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many

>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins

Probab=96.10  E-value=0.025  Score=49.35  Aligned_cols=91  Identities=27%  Similarity=0.217  Sum_probs=60.1

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .+++..|-|..+.   ...|..|...+.|+|+|+-+-... .+.+ .......|...+.+. .....++  .++.++.+.
T Consensus        67 v~~~~~gpG~~n~---~~~l~~a~~~~~P~v~i~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~  139 (160)
T cd07034          67 AMTATSGPGLNLM---AEALYLAAGAELPLVIVVAQRPGPSTGLP-KPDQSDLMAARYGGH-PWPVLAP--SSVQEAFDL  139 (160)
T ss_pred             EEEeeCcchHHHH---HHHHHHHHhCCCCEEEEEeeCCCCCCCCC-CcCcHHHHHHHhCCC-CEEEEeC--CCHHHHHHH
Confidence            6667778877773   567888888899999999765421 1110 111111233334433 3445555  466799999


Q ss_pred             HHHHHHHHHcCCCCEEEEE
Q 018048          305 AKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       305 l~~Al~~ar~~~gP~lIev  323 (361)
                      +++|++.++..++|++|.+
T Consensus       140 ~~~A~~~a~~~~~Pv~l~~  158 (160)
T cd07034         140 ALEAFELAEKYRLPVIVLS  158 (160)
T ss_pred             HHHHHHHHHHhCCCEEEEc
Confidence            9999999999889999865

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th

>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins

Probab=95.55  E-value=0.085  Score=46.83  Aligned_cols=108  Identities=13%  Similarity=0.046  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|-|.+.+.          +.-.++++..|=|..+ .  ...+..|...+.|+|+|+-+-....  .........|...
T Consensus        49 ~mAdgyar~s----------g~~gv~~~t~GpG~~n-~--~~gl~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~  113 (162)
T cd07037          49 FFALGLAKAS----------GRPVAVVCTSGTAVAN-L--LPAVVEAYYSGVPLLVLTADRPPEL--RGTGANQTIDQVG  113 (162)
T ss_pred             HHHHHHHHhh----------CCCEEEEECCchHHHH-H--hHHHHHHHhcCCCEEEEECCCCHHh--cCCCCCcccchhh
Confidence            3466666652          2223344444666666 2  5689999999999999987543211  1111112234455


Q ss_pred             ccccCCccEEEEeCCC----HHHHHHHHHHHHHHHHcCC-CCEEEEEE
Q 018048          282 KGPAFGMPGFHVDGMD----VLKVREVAKEAIERARRGE-GPTLVECE  324 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D----~~~v~~al~~Al~~ar~~~-gP~lIev~  324 (361)
                      +.+.+--...+|...+    ...+.+.+++|+..++.+. ||++|++-
T Consensus       114 l~~~vtk~~~~v~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP  161 (162)
T cd07037         114 LFGDYVRWSVDLPPPEDDDDLWYLLRLANRAVLEALSAPPGPVHLNLP  161 (162)
T ss_pred             hccceeeEEEecCCcccchhHHHHHHHHHHHHHHHhCCCCCCEEEecc
Confidence            5555544555665443    1116778899999998865 99999873

Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim

>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase

Probab=95.43  E-value=0.041  Score=55.08  Aligned_cols=115  Identities=15%  Similarity=0.140  Sum_probs=74.0

Q ss_pred             ccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEE--ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc
Q 018048          196 FIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA  273 (361)
Q Consensus       196 ~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~--~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q  273 (361)
                      .=|.++.+|.|+.+|           ..++.+|.+  .|=|-.-.-  ..+|.....|++|++++|-.-++ .+....-|
T Consensus        34 ~E~~av~iaaG~~la-----------tG~~~~v~mQnSGlGn~vN~--l~SL~~~~~y~iP~l~~i~~RG~-~g~~depq   99 (361)
T TIGR03297        34 NEGAAVGLAAGAYLA-----------TGKRAAVYMQNSGLGNAVNP--LTSLADTEVYDIPLLLIVGWRGE-PGVHDEPQ   99 (361)
T ss_pred             CchHHHHHHHHHHHh-----------cCCccEEEEecCchhhhhhH--HHhhccccccCcCeeEEEecCCC-CCCCCCch
Confidence            457788999999998           233444443  333321111  33444457799999999987762 23221222


Q ss_pred             c--CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          274 T--SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       274 ~--~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      .  ...--.++.+++|+++..++. +..+....+..|++.+.+.++|+.|-+.-
T Consensus       100 h~~~G~~t~~lL~~~~i~~~~~~~-~~~~~~~~~~~a~~~~~~~~~p~a~l~~~  152 (361)
T TIGR03297       100 HVKQGRITLSLLDALEIPWEVLST-DNDEALAQIERALAHALATSRPYALVVRK  152 (361)
T ss_pred             hhHHhHHHHHHHHHcCCCEEECCC-ChHHHHHHHHHHHHHHHHHCCCEEEEEcc
Confidence            1  122234566789999999953 33467778999999999999998887744

This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A

>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated

Probab=95.17  E-value=0.13  Score=51.71  Aligned_cols=116  Identities=17%  Similarity=0.159  Sum_probs=80.4

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc--cccccccccCCc
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA--IGMSHLRATSDP  277 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~--is~~~~~q~~~~  277 (361)
                      ++.+|+|+++|             +.++++.+-=+++.--  +|.+.+++-..+|+|+++.+.. +  .+.+...+....
T Consensus        60 A~~~a~GAs~a-------------G~Ra~TaTSg~Gl~lm--~E~~~~a~~~e~P~Viv~~~R~-gp~tg~p~~~~q~D~  123 (376)
T PRK08659         60 SMAAVIGASWA-------------GAKAMTATSGPGFSLM--QENIGYAAMTETPCVIVNVQRG-GPSTGQPTKPAQGDM  123 (376)
T ss_pred             HHHHHHhHHhh-------------CCCeEeecCCCcHHHH--HHHHHHHHHcCCCEEEEEeecC-CCCCCCCCCcCcHHH
Confidence            46789999998             4456666555555533  7899999999999988888876 3  233332222222


Q ss_pred             chhhccccCC-ccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          278 QIYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       278 d~~~~A~a~G-i~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                      +.. +..++| .+.+.....|+++.++....|++-+.+..-|+++-...  .-+|+..
T Consensus       124 ~~~-~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~--~lsh~~~  178 (376)
T PRK08659        124 MQA-RWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADE--VVGHMRE  178 (376)
T ss_pred             HHH-hcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEech--HhhCCcc
Confidence            222 222333 55577788899999999999999999888999998877  3667643

>PRK08611 pyruvate oxidase; Provisional

Probab=94.86  E-value=0.15  Score=54.04  Aligned_cols=95  Identities=14%  Similarity=0.117  Sum_probs=66.6

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|-..+.|+|+|.-.-....  .........|...+.+.+---..+|+  ++.++.++
T Consensus        70 gv~~~t~GPG~~N~---l~gla~A~~~~~Pvl~ItG~~~~~~--~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~~  142 (576)
T PRK08611         70 GVCLSIGGPGAIHL---LNGLYDAKMDHVPVLALAGQVTSDL--LGTDFFQEVNLEKMFEDVAVYNHQIM--SAENLPEI  142 (576)
T ss_pred             eEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccc--cCCCCccccCHHHHhhcccceeEEeC--CHHHHHHH
Confidence            44555558888872   4578999999999999987654221  11111223466677776655555665  45588889


Q ss_pred             HHHHHHHHHcCCCCEEEEEEEe
Q 018048          305 AKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +.+|+..+....||+.|++-.+
T Consensus       143 l~~A~~~A~~~~GPV~l~iP~D  164 (576)
T PRK08611        143 VNQAIRTAYEKKGVAVLTIPDD  164 (576)
T ss_pred             HHHHHHHHhhCCCCEEEEeChh
Confidence            9999999988889999998664

>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated

Probab=94.48  E-value=0.24  Score=49.42  Aligned_cols=114  Identities=18%  Similarity=0.100  Sum_probs=80.6

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      ++.+|+|+++|             +.++++.+-++++.-.  +|.|..|+-..+|+++++.+-. +-++. ..+....|.
T Consensus        60 A~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm--~E~l~~a~~~e~P~v~v~v~R~-~p~~g-~t~~eq~D~  122 (352)
T PRK07119         60 AINMVYGAAAT-------------GKRVMTSSSSPGISLK--QEGISYLAGAELPCVIVNIMRG-GPGLG-NIQPSQGDY  122 (352)
T ss_pred             HHHHHHHHHhh-------------CCCEEeecCcchHHHH--HHHHHHHHHccCCEEEEEeccC-CCCCC-CCcchhHHH
Confidence            46789999998             6678888888888855  8999999999999888888754 22221 112111232


Q ss_pred             --hhccccC-CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048          280 --YKKGPAF-GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (361)
Q Consensus       280 --~~~A~a~-Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (361)
                        +.+..+. ..+.+..+..|+++.++....|.+-+.+..-|+++-...+  .+|+
T Consensus       123 ~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~--lsh~  176 (352)
T PRK07119        123 FQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV--LGQM  176 (352)
T ss_pred             HHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh--hhCc
Confidence              1111111 2355567778999999999999999988888999988773  3564

>PRK06457 pyruvate dehydrogenase; Provisional

Probab=94.45  E-value=0.23  Score=52.27  Aligned_cols=95  Identities=12%  Similarity=0.029  Sum_probs=63.8

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|-..+.|+|+|+-.-...  ..........|...+++.+--...+|.  ++.++...
T Consensus        66 gv~~~t~GPG~~N~---l~~l~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~l~~~vtk~~~~v~--~~~~~~~~  138 (549)
T PRK06457         66 SACMGTSGPGSIHL---LNGLYDAKMDHAPVIALTGQVESD--MIGHDYFQEVNLTKLFDDVAVFNQILI--NPENAEYI  138 (549)
T ss_pred             eEEEeCCCCchhhh---HHHHHHHHhcCCCEEEEecCCCcc--ccCCCcccccchhhhhccceeEEEEeC--CHHHHHHH
Confidence            44455568888772   557999999999999998654311  111111223355666655544445554  45588889


Q ss_pred             HHHHHHHHHcCCCCEEEEEEEe
Q 018048          305 AKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +++|+..+....||+.|++-.+
T Consensus       139 i~~A~~~a~~~~GPV~l~iP~D  160 (549)
T PRK06457        139 IRRAIREAISKRGVAHINLPVD  160 (549)
T ss_pred             HHHHHHHHhcCCCCEEEEeCHh
Confidence            9999999888889999999754

>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase

Probab=94.43  E-value=0.17  Score=53.12  Aligned_cols=97  Identities=15%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|...+.|||+|+-......-..........|...+++.+--...+|+  ++.++.+.
T Consensus        67 gv~~~t~GPG~~N~---~~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~  141 (554)
T TIGR03254        67 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVL--RAEDIGIG  141 (554)
T ss_pred             EEEEEccCccHHhH---HHHHHHHHhcCCCEEEEEccCCccccccCCCCcchhhHHHHhhhhheeEEEcC--CHHHHHHH
Confidence            45555668888873   56799999999999999875542210001111223466677777666666776  45688889


Q ss_pred             HHHHHHHHHcC-CCCEEEEEEEe
Q 018048          305 AKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.+|++.++.+ .||+.|++-.+
T Consensus       142 i~rA~~~A~~~~pGPV~l~iP~D  164 (554)
T TIGR03254       142 IARAIRTAVSGRPGGVYLDLPAA  164 (554)
T ss_pred             HHHHHHHHhcCCCCcEEEEcCHH
Confidence            99999998875 48999998764

In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.

>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=94.35  E-value=0.17  Score=53.53  Aligned_cols=109  Identities=20%  Similarity=0.151  Sum_probs=77.6

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      .-+|-|.+.+.          +.-.++++..|-|+.+-   ...|.+|...+.|+|.|.-.=.  ............|..
T Consensus        52 a~mAdgyar~T----------GkpgV~~~tsGPGatN~---~tgla~A~~d~~Pll~itGqv~--~~~~g~~afQe~D~~  116 (550)
T COG0028          52 AFAADGYARAT----------GKPGVCLVTSGPGATNL---LTGLADAYMDSVPLLAITGQVP--TSLIGTDAFQEVDQV  116 (550)
T ss_pred             HHHHHHHHHHc----------CCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCcc--ccccCcchhhhcchh
Confidence            34577777662          45578888999999982   4469999999999998875221  111112222334777


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+.+.+=-..++|..  ++++.+.+++|++.|..++ ||++|++-.+
T Consensus       117 ~l~~p~tk~~~~v~~--~~~ip~~i~~Af~~A~sgrpGpv~i~iP~D  161 (550)
T COG0028         117 GLFRPITKYNFEVRS--PEDIPEVVARAFRIALSGRPGPVVVDLPKD  161 (550)
T ss_pred             hHhhhhheeEEEeCC--HHHHHHHHHHHHHHHhcCCCceEEEEcChh
Confidence            777776666667764  4599999999999999877 9999998654

>PRK07524 hypothetical protein; Provisional

Probab=93.84  E-value=0.31  Score=50.97  Aligned_cols=97  Identities=14%  Similarity=0.108  Sum_probs=65.9

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|..+.   ...+..|...++|||+|+-.... .++..........|...+.+.+-....+|.  ++.++.+
T Consensus        66 gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~--~~~~~~~  140 (535)
T PRK07524         66 GVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVNRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLM--SAEDLPE  140 (535)
T ss_pred             eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCChhhcCCCCccccccccHHHHhhhhceeEEEeC--CHHHHHH
Confidence            45556668887772   56799999999999999865431 111100000112466677777766666775  4558888


Q ss_pred             HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          304 VAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      .+.+|+..|+.. .||+.|++-.+
T Consensus       141 ~l~~A~~~A~~~~~GPV~l~iP~D  164 (535)
T PRK07524        141 VLARAFAVFDSARPRPVHIEIPLD  164 (535)
T ss_pred             HHHHHHHHHhcCCCCcEEEEeCHh
Confidence            999999999876 59999998754

>PRK07064 hypothetical protein; Provisional

Probab=93.77  E-value=0.31  Score=51.06  Aligned_cols=110  Identities=20%  Similarity=0.108  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...+.|||+|+-+-. ..++..........|..
T Consensus        55 ~~A~gyar~t----------g~~~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~d~~  121 (544)
T PRK07064         55 NMADAHARVS----------GGLGVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQIETPYLDQDLGYIHEAPDQL  121 (544)
T ss_pred             HHHHHHHHhc----------CCCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcccccCCCcccccccCHH
Confidence            3466666651          22345555668888872   5679999999999999986422 11111100001123566


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      .+++.+=-...+|+  ++.++...+++|+..+... .||+.|++-.+
T Consensus       122 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d  166 (544)
T PRK07064        122 TMLRAVSKAAFRVR--SAETALATIREAVRVALTAPTGPVSVEIPID  166 (544)
T ss_pred             HHhhhhcceEEEeC--CHHHHHHHHHHHHHHhccCCCCcEEEEeCHh
Confidence            66666655566775  4568888999999998886 69999999754

>PRK07525 sulfoacetaldehyde acetyltransferase; Validated

Probab=93.72  E-value=0.34  Score=51.41  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|.++.   ...+..|...+.|||+|+-.-.. .++   +......|...+++.+--...+|+  ++.++..
T Consensus        70 gv~~~t~GPG~~n~---~~gi~~A~~~~~Pvl~I~g~~~~~~~~---~~~~q~~d~~~l~~~~tk~~~~i~--~~~~~~~  141 (588)
T PRK07525         70 GMVIGQNGPGITNF---VTAVATAYWAHTPVVLVTPQAGTKTIG---QGGFQEAEQMPMFEDMTKYQEEVR--DPSRMAE  141 (588)
T ss_pred             EEEEEcCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCcccCC---CCCCcccchhhhhhhheeEEEECC--CHHHHHH
Confidence            45555568887772   45788999999999999842220 111   111112355556665544444554  5568888


Q ss_pred             HHHHHHHHHHcCCCCEEEEEEEe
Q 018048          304 VAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ++++|+..++...||+.|++-.+
T Consensus       142 ~i~rA~~~A~~~~GPV~i~iP~D  164 (588)
T PRK07525        142 VLNRVFDKAKRESGPAQINIPRD  164 (588)
T ss_pred             HHHHHHHHHhcCCCCEEEEcChh
Confidence            99999999999899999999754

>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=93.69  E-value=0.3  Score=52.11  Aligned_cols=95  Identities=19%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...|..|...+.|||+|+-+-...  ..........|...+++.+--...+|+  +++++...
T Consensus        87 gv~~~t~GPG~~n~---l~gl~~A~~d~~Pvl~i~G~~~~~--~~~~~~~Qe~d~~~~~~~vtk~~~~v~--~~~~i~~~  159 (616)
T PRK07418         87 GVCFGTSGPGATNL---VTGIATAQMDSVPMVVITGQVPRP--AIGTDAFQETDIFGITLPIVKHSYVVR--DPSDMARI  159 (616)
T ss_pred             eEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCcc--ccCCCCcccccHHHHhhhcceeEEEeC--CHHHHHHH
Confidence            44555558888883   567999999999999998643311  101111122455556665544445665  55688889


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +.+|++.|..++ ||+.|++-.+
T Consensus       160 l~~A~~~A~~~~~GPv~l~iP~D  182 (616)
T PRK07418        160 VAEAFHIASSGRPGPVLIDIPKD  182 (616)
T ss_pred             HHHHHHHHhcCCCCcEEEecchh
Confidence            999999998876 9999998653

>PRK09259 putative oxalyl-CoA decarboxylase; Validated

Probab=93.63  E-value=0.34  Score=51.13  Aligned_cols=96  Identities=17%  Similarity=0.206  Sum_probs=65.0

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|..+.   ...+..|...+.|||+|+-.-.... +. .+......|...+++.+--...+|+  ++.++.+
T Consensus        74 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~-~~~~~q~~d~~~~~~~~tk~s~~v~--~~~~~~~  147 (569)
T PRK09259         74 GVCLTVSAPGFLNG---LTALANATTNCFPMIMISGSSEREIVDL-QQGDYEELDQLNAAKPFCKAAFRVN--RAEDIGI  147 (569)
T ss_pred             EEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEEccCCcccccc-cCCCccccchhhhhhhheeeeEEcC--CHHHHHH
Confidence            44555558887773   5679999999999999986543211 11 1111123456666666655566665  5669999


Q ss_pred             HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          304 VAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      .+.+|+..|..+ .||+.|++-.+
T Consensus       148 ~i~~A~~~A~~~~~GPV~l~iP~D  171 (569)
T PRK09259        148 GVARAIRTAVSGRPGGVYLDLPAK  171 (569)
T ss_pred             HHHHHHHHhhhCCCCcEEEEeCHH
Confidence            999999999886 58999998754

>PRK07586 hypothetical protein; Validated

Probab=93.59  E-value=0.32  Score=50.59  Aligned_cols=96  Identities=19%  Similarity=0.093  Sum_probs=65.0

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|...+.|||+|.-.-...  ..........|...+++.+--...+|.  ++.++.+.
T Consensus        66 gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~~~~~vtk~~~~v~--~~~~~~~~  138 (514)
T PRK07586         66 AATLLHLGPGLANG---LANLHNARRARTPIVNIVGDHATY--HRKYDAPLTSDIEALARPVSGWVRRSE--SAADVAAD  138 (514)
T ss_pred             EEEEecccHHHHHH---HHHHHHHHhcCCCEEEEecCCchh--ccCCCcccccchhhhhccccceeeecC--CHHHHHHH
Confidence            44555668887662   557888999999999998654311  111111123466667776655555665  45588889


Q ss_pred             HHHHHHHHHcC-CCCEEEEEEEec
Q 018048          305 AKEAIERARRG-EGPTLVECETYR  327 (361)
Q Consensus       305 l~~Al~~ar~~-~gP~lIev~t~R  327 (361)
                      +++|+..++.+ .||+.|++-.+-
T Consensus       139 i~~A~~~a~~~~~GPV~l~iP~Dv  162 (514)
T PRK07586        139 AAAAVAAARGAPGQVATLILPADV  162 (514)
T ss_pred             HHHHHHHHhcCCCCcEEEEeccch
Confidence            99999999987 699999997753

>PRK08155 acetolactate synthase catalytic subunit; Validated

Probab=93.54  E-value=0.39  Score=50.65  Aligned_cols=106  Identities=21%  Similarity=0.261  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceE--EEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVT--LAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~V--v~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      -+|-|.+.+            .+++.  ++..|=|..+.   .-.|..|...+.|||+|.-.-....  .........|.
T Consensus        65 ~~Adgyar~------------tg~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~  127 (564)
T PRK08155         65 FIAQGMART------------TGKPAVCMACSGPGATNL---VTAIADARLDSIPLVCITGQVPASM--IGTDAFQEVDT  127 (564)
T ss_pred             HHHHHHHHH------------cCCCeEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeccCCccc--ccCCCccccch
Confidence            346666665            23444  44447777772   5578899999999999986433111  01111122345


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      ..+++.+--...+|+  ++.++...+++|+..++.. .||+.|++-.+
T Consensus       128 ~~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~D  173 (564)
T PRK08155        128 YGISIPITKHNYLVR--DIEELPQVISDAFRIAQSGRPGPVWIDIPKD  173 (564)
T ss_pred             hhhhhccceEEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcCHh
Confidence            555555444455664  6678999999999999887 49999999654

>TIGR01504 glyox_carbo_lig glyoxylate carboligase

Probab=93.51  E-value=0.37  Score=51.22  Aligned_cols=96  Identities=18%  Similarity=0.195  Sum_probs=65.4

Q ss_pred             CceEEEE--ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          224 DHVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       224 ~~~Vv~~--~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      +++.+|+  .|=|..+.   ...|..|...+.|||+|+-.-....  ..+......|...+.+.+--...+|.  ++.++
T Consensus        66 g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~D~~~~~~~vtk~~~~v~--~~~~i  138 (588)
T TIGR01504        66 GNIGVCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRAR--LHKEDFQAVDIAAIAKPVSKMAVTVR--EAALV  138 (588)
T ss_pred             CCeEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcccccCHHHHhhhhceEEEEcC--CHHHH
Confidence            3444444  57877762   5579999999999999986544221  11111223466677776665566665  56688


Q ss_pred             HHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          302 REVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       302 ~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+.+++|+..|+.++ ||+.|++-.+
T Consensus       139 ~~~i~~A~~~A~~~~~GPV~l~iP~D  164 (588)
T TIGR01504       139 PRVLQQAFHLMRSGRPGPVLIDLPFD  164 (588)
T ss_pred             HHHHHHHHHHHccCCCCeEEEEeCcc
Confidence            889999999988765 8999999765

Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.

>PRK08199 thiamine pyrophosphate protein; Validated

Probab=93.49  E-value=0.53  Score=49.52  Aligned_cols=95  Identities=15%  Similarity=0.128  Sum_probs=62.5

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   .-.|..|-..+.|||+|.-.-...  ...+......|...+++.+=-...+|  .++.++.+.
T Consensus        73 gv~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v--~~~~~~~~~  145 (557)
T PRK08199         73 GICFVTRGPGATNA---SIGVHTAFQDSTPMILFVGQVARD--FREREAFQEIDYRRMFGPMAKWVAEI--DDAARIPEL  145 (557)
T ss_pred             EEEEeCCCccHHHH---HHHHHHHhhcCCCEEEEecCCccc--cCCCCcccccCHHHhhhhhhceeeec--CCHHHHHHH
Confidence            34455558887772   567999999999999998543211  11111112235555555543344455  467788899


Q ss_pred             HHHHHHHHHcC-CCCEEEEEEEe
Q 018048          305 AKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.+|+..+..+ .||+.|++-.+
T Consensus       146 ~~~A~~~A~~~~~GPV~l~iP~d  168 (557)
T PRK08199        146 VSRAFHVATSGRPGPVVLALPED  168 (557)
T ss_pred             HHHHHHHHhcCCCCcEEEEcCHh
Confidence            99999999887 49999988754

>PRK06466 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.42  E-value=0.36  Score=51.02  Aligned_cols=95  Identities=20%  Similarity=0.242  Sum_probs=66.2

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|-..+.|||+|.-.-....  .........|...+++.+--...+|+  ++.++...
T Consensus        69 gv~~vt~GPG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~l~~~itk~s~~v~--~~~~~~~~  141 (574)
T PRK06466         69 GVVLVTSGPGATNA---ITGIATAYMDSIPMVVLSGQVPSTL--IGEDAFQETDMVGISRPIVKHSFMVK--HASEIPEI  141 (574)
T ss_pred             EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCCccc--cCCCcccccchhhhhhccceeEEEcC--CHHHHHHH
Confidence            45566668888872   5679999999999999986544221  11111223466667776655566665  45688889


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +++|+..|+.+. ||+.|++-.+
T Consensus       142 ~~rA~~~A~~~~~GPV~l~iP~D  164 (574)
T PRK06466        142 IKKAFYIAQSGRPGPVVVDIPKD  164 (574)
T ss_pred             HHHHHHHHhcCCCCcEEEEcCHh
Confidence            999999998874 9999999775

>PRK06456 acetolactate synthase catalytic subunit; Reviewed

Probab=93.41  E-value=0.56  Score=49.51  Aligned_cols=94  Identities=17%  Similarity=0.106  Sum_probs=63.9

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al  305 (361)
                      ++++..|=|..+.   ...+..|-..+.|||+|.-.-....  .........|...+++.+--...+|+  ++.++...+
T Consensus        71 v~~~t~GpG~~N~---l~gi~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~i~~~~tk~~~~v~--~~~~~~~~l  143 (572)
T PRK06456         71 VCTATSGPGTTNL---VTGLITAYWDSSPVIAITGQVPRSV--MGKMAFQEADAMGVFENVTKYVIGIK--RIDEIPQWI  143 (572)
T ss_pred             EEEeCCCCCHHHH---HHHHHHHHhhCCCEEEEecCCCccc--cCCCCccccchhhhhhccceeEEEeC--CHHHHHHHH
Confidence            3444568888872   5678999999999999986543211  11111222355666666655566674  566888889


Q ss_pred             HHHHHHHHcCC-CCEEEEEEEe
Q 018048          306 KEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       306 ~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+|++.++.+. ||+.|++-.+
T Consensus       144 ~~A~~~A~~~~~GPV~l~iP~D  165 (572)
T PRK06456        144 KNAFYIATTGRPGPVVIDIPRD  165 (572)
T ss_pred             HHHHHHHhcCCCCcEEEecChh
Confidence            99999998865 9999999754

>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase

Probab=93.40  E-value=0.39  Score=50.82  Aligned_cols=94  Identities=22%  Similarity=0.228  Sum_probs=63.4

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|..+.   ...|..|-..+.|||+|.-.-. ..++   .......|...+.+.+--...+|.  ++.++..
T Consensus        66 gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~I~g~~~~~~~~---~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~  137 (579)
T TIGR03457        66 SMVIGQNGPGVTNC---VTAIAAAYWAHTPVVIVTPEAGTKTIG---LGGFQEADQLPMFQEFTKYQGHVR--HPSRMAE  137 (579)
T ss_pred             EEEEECCCchHHHH---HHHHHHHhhcCCCEEEEeCCCccccCC---CCCCcccchhhhhhcceeEEEecC--CHHHHHH
Confidence            44555568888872   4579999999999999974322 1111   111122355666666555555664  5568888


Q ss_pred             HHHHHHHHHHcCCCCEEEEEEEe
Q 018048          304 VAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      .+++|+..+..++||+.|++-.+
T Consensus       138 ~i~~A~~~A~~~~GPV~l~iP~D  160 (579)
T TIGR03457       138 VLNRCFERAWREMGPAQLNIPRD  160 (579)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCcc
Confidence            99999999999889999999754

Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.

>PRK06112 acetolactate synthase catalytic subunit; Validated

Probab=93.40  E-value=0.41  Score=50.61  Aligned_cols=95  Identities=17%  Similarity=0.055  Sum_probs=64.2

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|+.+.   .-.|..|-..++|||+|+-.-....  .........|...+++.+--...+|+  ++.++.+.
T Consensus        76 gv~~~t~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~~--~~~~~~Q~~d~~~l~~~vtk~~~~v~--~~~~~~~~  148 (578)
T PRK06112         76 AVVTAQNGPAATLL---VAPLAEALKASVPIVALVQDVNRDQ--TDRNAFQELDHIALFQSCTKWVRRVT--VAERIDDY  148 (578)
T ss_pred             EEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCcccc--CCCCCccccChhhhhccccceEEEeC--CHHHHHHH
Confidence            44555557777662   5578889999999999985433111  11111223456667777666666675  45588889


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +++|+..++.+. ||+.|++-.+
T Consensus       149 i~~A~~~A~~~~~GPv~l~iP~D  171 (578)
T PRK06112        149 VDQAFTAATSGRPGPVVLLLPAD  171 (578)
T ss_pred             HHHHHHHHhhCCCCcEEEEcCHh
Confidence            999999998874 9999999765

>PRK07979 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.32  E-value=0.37  Score=50.93  Aligned_cols=109  Identities=20%  Similarity=0.194  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|-|.+.+.          +.-.++++..|=|.++.   ...+..|...+.|||+|+-.-....  ..+......|...
T Consensus        56 ~mAdgYar~t----------g~~gv~~~t~GPG~~n~---l~gi~~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~  120 (574)
T PRK07979         56 HMADGLARAT----------GEVGVVLVTSGPGATNA---ITGIATAYMDSIPLVVLSGQVATSL--IGYDAFQECDMVG  120 (574)
T ss_pred             HHHHHHHHHh----------CCceEEEECCCccHhhh---HHHHHHHhhcCCCEEEEECCCChhc--cCCCCCceecHHH
Confidence            3566666652          23355666668887772   5678999999999999986543111  1111122346666


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEec
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETYR  327 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R  327 (361)
                      +.+.+--...+|+  +++++...+++|+..+..+. ||+.|++-.+=
T Consensus       121 l~~~~tk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv  165 (574)
T PRK07979        121 ISRPVVKHSFLVK--QTEDIPQVLKKAFWLAASGRPGPVVVDLPKDI  165 (574)
T ss_pred             HhhcccceEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChhh
Confidence            7776666666775  56688889999999988875 99999997653

>PRK06725 acetolactate synthase 3 catalytic subunit; Validated

Probab=93.27  E-value=0.37  Score=51.02  Aligned_cols=108  Identities=21%  Similarity=0.228  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|-|.+.+.          +.-.++++..|=|..+.   ...|..|-..+.|||+|+-.-....  .........|...
T Consensus        66 ~mAdgyar~t----------g~~gv~~~t~GpG~~N~---~~gla~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~  130 (570)
T PRK06725         66 HAAEGYARAS----------GKVGVVFATSGPGATNL---VTGLADAYMDSIPLVVITGQVATPL--IGKDGFQEADVVG  130 (570)
T ss_pred             HHHHHHHHHh----------CCCeEEEECCCccHHHH---HHHHHHHhhcCcCEEEEecCCCccc--ccCCCCcccchhh
Confidence            3566666651          22345556668887772   5578899999999999986443111  1111122346667


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +++.+--...+|.  ++.++.+.+++|+..++.+. ||+.|++-.+
T Consensus       131 l~~~itk~~~~v~--~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~D  174 (570)
T PRK06725        131 ITVPVTKHNYQVR--DVNQLSRIVQEAFYIAESGRPGPVLIDIPKD  174 (570)
T ss_pred             hhhccceeEEEcC--CHHHHHHHHHHHHHHHhcCCCCcEEEccccc
Confidence            7777766666775  55688899999999998875 9999999764

>PLN02470 acetolactate synthase

Probab=93.13  E-value=0.37  Score=51.13  Aligned_cols=96  Identities=26%  Similarity=0.243  Sum_probs=65.4

Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      -.++++..|=|.++.   ...+..|-..+.|||+|.-.-...  ..........|...+++.+--...+|+  ++.++.+
T Consensus        77 ~gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~i~~  149 (585)
T PLN02470         77 VGVCIATSGPGATNL---VTGLADALLDSVPLVAITGQVPRR--MIGTDAFQETPIVEVTRSITKHNYLVM--DVEDIPR  149 (585)
T ss_pred             CEEEEECCCccHHHH---HHHHHHHHhcCCcEEEEecCCChh--hcCCCcCcccchhhhhhhheEEEEEcC--CHHHHHH
Confidence            345566668888872   557889999999999998644311  111111122355566666655556664  5668999


Q ss_pred             HHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          304 VAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+++|+..++.++ ||+.|++-.+
T Consensus       150 ~l~~A~~~A~s~~~GPV~l~iP~D  173 (585)
T PLN02470        150 VIREAFFLASSGRPGPVLVDIPKD  173 (585)
T ss_pred             HHHHHHHHhcCCCCCeEEEEecCc
Confidence            9999999998875 9999999754

>PRK11269 glyoxylate carboligase; Provisional

Probab=93.03  E-value=0.51  Score=50.11  Aligned_cols=94  Identities=19%  Similarity=0.160  Sum_probs=63.6

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al  305 (361)
                      ++++..|=|..+.   .-.+..|...+.|+|+|.-+-....  ..+......|...+++.+--...+|  .++.++...+
T Consensus        71 v~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~l~~~itk~s~~v--~~~~~~~~~i  143 (591)
T PRK11269         71 VCIGTSGPAGTDM---ITGLYSASADSIPILCITGQAPRAR--LHKEDFQAVDIESIAKPVTKWAVTV--REPALVPRVF  143 (591)
T ss_pred             EEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcccccChhhHhhcceeEEEEc--CCHHHHHHHH
Confidence            3444557777772   5578899999999999987554211  1111122345666666654445566  4566888999


Q ss_pred             HHHHHHHHcCC-CCEEEEEEEe
Q 018048          306 KEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       306 ~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      ++|++.++.+. ||+.|++-.+
T Consensus       144 ~~A~~~A~~~~~GPV~l~iP~D  165 (591)
T PRK11269        144 QQAFHLMRSGRPGPVLIDLPFD  165 (591)
T ss_pred             HHHHHHHhhCCCCeEEEEeChh
Confidence            99999998865 8999999754

>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed

Probab=93.02  E-value=0.5  Score=49.61  Aligned_cols=107  Identities=27%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|.++.   .-.|..|...+.|||+|.-.-.. .++   .......|..
T Consensus        52 ~~Adgyar~s----------g~~gv~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~i~g~~~~~~~~---~~~~q~~d~~  115 (548)
T PRK08978         52 MAAIGYARAT----------GKVGVCIATSGPGATNL---ITGLADALLDSVPVVAITGQVSSPLIG---TDAFQEIDVL  115 (548)
T ss_pred             HHHHHHHHHh----------CCCEEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccC---CCCCcccchh
Confidence            4466666652          22344555557877772   56899999999999999864431 111   1111223555


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+++.+--...+|+  ++.++...+++|++.++.+. ||+.|++-.+
T Consensus       116 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  160 (548)
T PRK08978        116 GLSLACTKHSFLVQ--SLEELPEIMAEAFEIASSGRPGPVLVDIPKD  160 (548)
T ss_pred             ccccCceeeEEEEC--CHHHHHHHHHHHHHHHhcCCCCcEEEecChh
Confidence            66666655566775  56688889999999988864 9999998754

>PRK07789 acetolactate synthase 1 catalytic subunit; Validated

Probab=92.95  E-value=0.48  Score=50.58  Aligned_cols=96  Identities=23%  Similarity=0.216  Sum_probs=64.7

Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      -.++++..|=|.++.   ...|..|...++|+|+|+-.-...  ..........|...+++.+--...+|+  ++.++..
T Consensus        95 ~gv~~~t~GPG~~N~---l~gl~~A~~~~~PllvI~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~  167 (612)
T PRK07789         95 VGVCMATSGPGATNL---VTPIADANMDSVPVVAITGQVGRG--LIGTDAFQEADIVGITMPITKHNFLVT--DADDIPR  167 (612)
T ss_pred             CEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCcc--ccCCCcCcccchhhhhhcceeEEEEcC--CHHHHHH
Confidence            345556667877772   567889999999999998644311  111111222466666666555555664  5668888


Q ss_pred             HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          304 VAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      .+.+|+..++.+ .||+.|++-.+
T Consensus       168 ~l~~A~~~A~~~~~GPV~l~iP~D  191 (612)
T PRK07789        168 VIAEAFHIASTGRPGPVLVDIPKD  191 (612)
T ss_pred             HHHHHHHHHhcCCCceEEEEEccc
Confidence            999999999876 49999999764

>PRK08322 acetolactate synthase; Reviewed

Probab=92.87  E-value=0.46  Score=49.82  Aligned_cols=108  Identities=17%  Similarity=0.087  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|-..+.|+|+|.-+-...  ...+......|...
T Consensus        52 ~~A~gyar~t----------g~~gv~~~t~GpG~~N~---~~~i~~A~~~~~Pll~i~g~~~~~--~~~~~~~q~~d~~~  116 (547)
T PRK08322         52 FMAATYGRLT----------GKAGVCLSTLGPGATNL---VTGVAYAQLGGMPMVAITGQKPIK--RSKQGSFQIVDVVA  116 (547)
T ss_pred             HHHHHHHHhh----------CCCEEEEECCCccHhHH---HHHHHHHhhcCCCEEEEecccccc--ccCCCccccccHHH
Confidence            4466666651          22334445557777772   557889999999999998643311  11111122345666


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.+.+--...+|+  ++.++...+.+|+..+... .||+.|++-.+
T Consensus       117 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  160 (547)
T PRK08322        117 MMAPLTKWTRQIV--SPDNIPEVVREAFRLAEEERPGAVHLELPED  160 (547)
T ss_pred             HhhhheeEEEEeC--CHHHHHHHHHHHHHHHccCCCCcEEEEcChh
Confidence            6665544455664  5668888999999999886 48999999764

>PRK07710 acetolactate synthase catalytic subunit; Reviewed

Probab=92.85  E-value=0.5  Score=49.94  Aligned_cols=109  Identities=24%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      .-+|.|.+.+.          +.-.++++..|=|..+.   ...|..|...+.|||+|.-.-...  ..........|..
T Consensus        66 ~~~A~gyar~t----------g~~gv~~~t~GPG~~N~---~~gl~~A~~~~~Pvl~ItG~~~~~--~~~~~~~q~~d~~  130 (571)
T PRK07710         66 IHAAEGYARIS----------GKPGVVIATSGPGATNV---VTGLADAMIDSLPLVVFTGQVATS--VIGSDAFQEADIM  130 (571)
T ss_pred             HHHHHHHHHHh----------CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeccCCcc--ccCCCCccccchh
Confidence            34566666652          22234455558887772   567889999999999998655421  1111111223555


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+++.+--...+|.  ++.++...+++|+..++.++ ||+.|++-.+
T Consensus       131 ~l~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D  175 (571)
T PRK07710        131 GITMPVTKHNYQVR--KASDLPRIIKEAFHIATTGRPGPVLIDIPKD  175 (571)
T ss_pred             hhhhcccceEEecC--CHHHHHHHHHHHHHHHhcCCCCcEEEEcChh
Confidence            66665544555664  45588889999999888774 9999999764

>PRK07282 acetolactate synthase catalytic subunit; Reviewed

Probab=92.79  E-value=0.53  Score=49.76  Aligned_cols=94  Identities=17%  Similarity=0.251  Sum_probs=65.1

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|..+.   ...|..|...+.|||+|.-.-. ..++   .......|...+++.+-....+|+  ++.++.+
T Consensus        75 gv~~~t~GPG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~~~~---~~~~q~~d~~~~~~~itk~s~~v~--~~~~~~~  146 (566)
T PRK07282         75 GVAVVTSGPGATNA---ITGIADAMSDSVPLLVFTGQVARAGIG---KDAFQEADIVGITMPITKYNYQIR--ETADIPR  146 (566)
T ss_pred             eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecccccccCC---CCCccccChhchhcCCCceeEEcC--CHHHHHH
Confidence            45566668888772   5578899999999999986543 1111   111122355566666655566665  5568888


Q ss_pred             HHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          304 VAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+.+|++.++.++ ||+.|++-.+
T Consensus       147 ~l~~A~~~A~~~~~GPV~l~iP~D  170 (566)
T PRK07282        147 IITEAVHIATTGRPGPVVIDLPKD  170 (566)
T ss_pred             HHHHHHHHHhcCCCCeEEEeCChh
Confidence            9999999998875 9999998764

>PRK12474 hypothetical protein; Provisional

Probab=92.69  E-value=0.6  Score=48.71  Aligned_cols=96  Identities=19%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...|..|...+.|||+|+-.......  ........|...+++.+--...+|  .++.++.+.
T Consensus        70 gv~~~t~GpG~~N~---~~gl~~A~~d~~Pvl~i~G~~~~~~~--~~~~~q~~d~~~~~~~vtk~~~~v--~~~~~~~~~  142 (518)
T PRK12474         70 AVTLLHLGPGLANG---LANLHNARRAASPIVNIVGDHAVEHL--QYDAPLTSDIDGFARPVSRWVHRS--ASAGAVDSD  142 (518)
T ss_pred             EEEEEccchhHhHh---HHHHHHHhhcCCCEEEEeccCchhhc--CCCCccccCHHHhhhcccceeeec--CCHHHHHHH
Confidence            44555668887762   55788899999999999865431110  111111236666666554444455  456688889


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEec
Q 018048          305 AKEAIERARRGE-GPTLVECETYR  327 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~R  327 (361)
                      +++|+..+..+. ||++|++-.+=
T Consensus       143 i~rA~~~A~~~~~GPV~l~iP~Dv  166 (518)
T PRK12474        143 VARAVQAAQSAPGGIATLIMPADV  166 (518)
T ss_pred             HHHHHHHHhcCCCCcEEEEechhh
Confidence            999999888875 99999997653

>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type

Probab=92.68  E-value=0.62  Score=49.03  Aligned_cols=95  Identities=22%  Similarity=0.250  Sum_probs=65.1

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|...++|||+|+-.-...  ..........|...+++.+-....+|+  ++.++...
T Consensus        66 gv~~~t~GpG~~n~---l~~i~~A~~~~~Pvl~i~g~~~~~--~~~~~~~q~~d~~~~~~~~tk~~~~v~--~~~~~~~~  138 (558)
T TIGR00118        66 GVVLVTSGPGATNL---VTGIATAYMDSIPMVVFTGQVPTS--LIGSDAFQEADILGITMPITKHSFQVK--SAEDIPRI  138 (558)
T ss_pred             EEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCCcc--ccCCCCCcccChhhhhcCccceeEEeC--CHHHHHHH
Confidence            45555668887772   567999999999999998643211  001111122356667777766677775  45688889


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +.+|++.+...+ ||+.|++-.+
T Consensus       139 v~~A~~~A~~~~~GPV~i~iP~d  161 (558)
T TIGR00118       139 IKEAFHIATTGRPGPVLVDLPKD  161 (558)
T ss_pred             HHHHHHHHhcCCCCeEEEEcChh
Confidence            999999998874 8999999754

Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.

>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit

Probab=92.67  E-value=0.63  Score=49.31  Aligned_cols=169  Identities=19%  Similarity=0.142  Sum_probs=100.1

Q ss_pred             eeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCcccc
Q 018048          118 FVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFI  197 (361)
Q Consensus       118 ~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~m  197 (361)
                      ......|.||++.|+..+  .-+ ++..|.-        -|-.+++..|....+.     .|....+..     .-    
T Consensus       192 ~~~~l~GNeAvA~ga~~a--g~~-~~~~YPi--------TPsTei~e~la~~~~~-----~~~~~~q~E-----~E----  246 (562)
T TIGR03710       192 DRILISGNEAIALGAIAA--GLR-FYAAYPI--------TPASDILEFLAKHLKK-----FGVVVVQAE-----DE----  246 (562)
T ss_pred             cEEEeehHHHHHHHHHHh--CCc-eecccCC--------CChhHHHHHHHHhhhh-----hCcEEEeec-----cH----
Confidence            344567999888766543  123 4455532        1233455555443331     111111111     00    


Q ss_pred             ccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccc--ccccccC
Q 018048          198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATS  275 (361)
Q Consensus       198 G~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~--~~~~q~~  275 (361)
                      -.++.+|+|+++|             +.++++.+-=.+++--  .|.|.+|+-..+|+|+++.|-. +.++  +++....
T Consensus       247 ~aA~~~a~GAs~a-------------G~Ra~taTSg~Gl~lm--~E~l~~a~~~~~P~Vi~~~~R~-gpstg~~t~~eq~  310 (562)
T TIGR03710       247 IAAINMAIGASYA-------------GARAMTATSGPGFALM--TEALGLAGMTETPLVIVDVQRG-GPSTGLPTKTEQS  310 (562)
T ss_pred             HHHHHHHHhHHhc-------------CCceeecCCCCChhHh--HHHHhHHHhccCCEEEEEcccC-CCCCCCCCCccHH
Confidence            1245779999998             4445555555555522  7899999999999888888876 4433  3222211


Q ss_pred             CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ...+...+.-=..+.+.+...|++++++....|.+.+.+..-|+++-...+.
T Consensus       311 D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~l  362 (562)
T TIGR03710       311 DLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQYL  362 (562)
T ss_pred             HHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechHH
Confidence            1122221110023456677788999999999999999999999999887764

The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.

>PRK09124 pyruvate dehydrogenase; Provisional

Probab=92.66  E-value=0.74  Score=48.66  Aligned_cols=96  Identities=10%  Similarity=-0.022  Sum_probs=60.8

Q ss_pred             CceEEEE--ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          224 DHVTLAF--FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       224 ~~~Vv~~--~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      +++.+|+  .|=|.++.   ...+..|...+.|+|+|.-+-....  .........|..++++.+-....+|+  ++.++
T Consensus        65 g~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~~~~~--~~~~~~Q~~d~~~l~~~itk~~~~v~--~~~~~  137 (574)
T PRK09124         65 GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSE--IGSGYFQETHPQELFRECSHYCELVS--NPEQL  137 (574)
T ss_pred             CCcEEEEECCCCCHHHH---HHHHHHHhhcCCCEEEEecCCcccc--CCCCCccccChhhhcccceeeeEEeC--CHHHH
Confidence            3445555  47777761   3468899999999999986543111  01111112345555554433344454  55588


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          302 REVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       302 ~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ...+++|+..+....||+.|++-.+
T Consensus       138 ~~~i~~A~~~A~~~~gPV~l~iP~D  162 (574)
T PRK09124        138 PRVLAIAMRKAILNRGVAVVVLPGD  162 (574)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeChh
Confidence            8889999999988889999998543

>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=92.64  E-value=1.3  Score=44.91  Aligned_cols=113  Identities=17%  Similarity=0.115  Sum_probs=75.6

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      ++.+|+|+++|             +.++++.+-=++++--  .|.|.+|+-..+|+|+++.|-.  ..++........|+
T Consensus        61 A~~~aiGAs~a-------------GaRa~TaTSg~Gl~lm--~E~l~~aa~~~lPiVi~~~~R~--~p~~~~~~~~q~D~  123 (390)
T PRK08366         61 AMAACIGASAA-------------GARAFTATSAQGLALM--HEMLHWAAGARLPIVMVDVNRA--MAPPWSVWDDQTDS  123 (390)
T ss_pred             HHHHHHHHHhh-------------CCCeEeeeCcccHHHH--hhHHHHHHhcCCCEEEEEeccC--CCCCCCCcchhhHH
Confidence            46789999998             5556666666666633  8999999999999888887553  12211111111232


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (361)
                      ... +--|+  +..-..|+++.++....|..-+.+..-|+++-...++.. |..
T Consensus       124 ~~~-~d~g~--i~~~~~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg~~~s-h~~  173 (390)
T PRK08366        124 LAQ-RDTGW--MQFYAENNQEVYDGVLMAFKVAETVNLPAMVVESAFILS-HTY  173 (390)
T ss_pred             HHH-hhcCE--EEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEecCcccc-ccc
Confidence            211 11233  555568889999999999999998899999988776654 443

>PRK08617 acetolactate synthase; Reviewed

Probab=92.62  E-value=0.56  Score=49.25  Aligned_cols=94  Identities=21%  Similarity=0.076  Sum_probs=63.2

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|.++.   ...+..|...+.|+|+|.-..... ++   +......|...+++.+--...+|+  ++.++..
T Consensus        69 gv~~vt~GpG~~N~---l~gl~~A~~~~~PvlvisG~~~~~~~~---~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~  140 (552)
T PRK08617         69 GVVLVTSGPGVSNL---ATGLVTATAEGDPVVAIGGQVKRADRL---KRTHQSMDNVALFRPITKYSAEVQ--DPDNLSE  140 (552)
T ss_pred             EEEEECCCCcHhHh---HHHHHHHhhcCCCEEEEecCCcccccC---CCCccccchhhhhhhhcceEEEeC--CHHHHHH
Confidence            34444457887772   567899999999999998643311 11   111223455666666655566675  5558888


Q ss_pred             HHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          304 VAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      .+.+|++.+..+ .||+.|++-.+
T Consensus       141 ~i~~A~~~a~~~~~GPV~l~iP~d  164 (552)
T PRK08617        141 VLANAFRAAESGRPGAAFVSLPQD  164 (552)
T ss_pred             HHHHHHHHHccCCCCcEEEeChhh
Confidence            999999998886 48999998754

>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins

Probab=92.60  E-value=0.5  Score=41.34  Aligned_cols=101  Identities=19%  Similarity=0.225  Sum_probs=55.6

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHH-HhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLN-MAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~-tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      +..|.|.|+.            ..+++++..  ..|..-. ++.|. .++.+++|+++++...++..+..- ......+.
T Consensus        52 vg~A~GlA~~------------G~~pi~~~~--~~f~~ra-~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G-~tH~~~~~  115 (156)
T cd07033          52 VGIAAGLALH------------GLKPFVSTF--SFFLQRA-YDQIRHDVALQNLPVKFVGTHAGISVGEDG-PTHQGIED  115 (156)
T ss_pred             HHHHHHHHHC------------CCeEEEEEC--HHHHHHH-HHHHHHHHhccCCCeEEEEECCcEecCCCC-cccchHHH
Confidence            3556676664            345555555  4555322 56665 889999999998886654432111 11111122


Q ss_pred             hhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          280 YKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       280 ~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      ..+.+  .+|+++| .-.|+.++..    .++++.+.++|++|-+
T Consensus       116 ~a~~~--~iPg~~v~~Ps~~~~~~~----ll~~a~~~~~P~~irl  154 (156)
T cd07033         116 IALLR--AIPNMTVLRPADANETAA----ALEAALEYDGPVYIRL  154 (156)
T ss_pred             HHHhc--CCCCCEEEecCCHHHHHH----HHHHHHhCCCCEEEEe
Confidence            22222  5666654 3346556544    4455556677998864

Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included

>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed

Probab=92.55  E-value=0.72  Score=46.46  Aligned_cols=116  Identities=19%  Similarity=0.204  Sum_probs=76.9

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcc
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQ  278 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d  278 (361)
                      ++.+|+|+++|             +.++++.+-=+++.--  .|.+.+++-..+|+++++.+-. =+.+.+...+...+.
T Consensus        59 A~~~a~GAs~a-------------G~Ra~taTSg~G~~lm--~E~~~~a~~~e~P~V~~~~~R~GpstG~p~~~~q~D~~  123 (375)
T PRK09627         59 GISVALGASMS-------------GVKSMTASSGPGISLK--AEQIGLGFIAEIPLVIVNVMRGGPSTGLPTRVAQGDVN  123 (375)
T ss_pred             HHHHHHHHHhh-------------CCCEEeecCCchHHHH--hhHHHHHHhccCCEEEEEeccCCCcCCCCCccchHHHH
Confidence            45789999998             4445665554555533  7899999999999888887753 123333322111111


Q ss_pred             hhhccccCC-ccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC
Q 018048          279 IYKKGPAFG-MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL  333 (361)
Q Consensus       279 ~~~~A~a~G-i~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~  333 (361)
                       ..+...+| .+.+.....++++++.....|++-+.+..-|++|-... + -+|+.
T Consensus       124 -~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~-~-lsh~~  176 (375)
T PRK09627        124 -QAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE-T-VGHMY  176 (375)
T ss_pred             -HHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch-H-HhCCe
Confidence             11222222 34456788899999999999999999888999998777 3 36654

>PRK06276 acetolactate synthase catalytic subunit; Reviewed

Probab=92.53  E-value=0.54  Score=49.85  Aligned_cols=95  Identities=17%  Similarity=0.153  Sum_probs=63.7

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|...+.|||+|+-.-...  ..........|...+++.+--...+|+  ++.++...
T Consensus        65 gv~~~t~GPG~~n~---l~~i~~A~~~~~Pvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~~tk~s~~v~--~~~~i~~~  137 (586)
T PRK06276         65 GVCVATSGPGATNL---VTGIATAYADSSPVIALTGQVPTK--LIGNDAFQEIDALGIFMPITKHNFQIK--KPEEIPEI  137 (586)
T ss_pred             EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcc--ccCCCCCccccHhhHHhhhcceEEecC--CHHHHHHH
Confidence            44555557877772   567999999999999998533211  001111122355666666665566675  45588889


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +.+|++.|...+ ||+.|++-.+
T Consensus       138 i~~A~~~A~~~~~GPV~l~iP~D  160 (586)
T PRK06276        138 FRAAFEIAKTGRPGPVHIDLPKD  160 (586)
T ss_pred             HHHHHHHhcCCCCCcEEEEcChh
Confidence            999999998764 8999999754

>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family

Probab=92.52  E-value=0.56  Score=49.28  Aligned_cols=99  Identities=14%  Similarity=0.042  Sum_probs=63.5

Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccc--cccccCCc-chhhccccCCccEEEEeCCCHH
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMS--HLRATSDP-QIYKKGPAFGMPGFHVDGMDVL  299 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~--~~~q~~~~-d~~~~A~a~Gi~~~~Vdg~D~~  299 (361)
                      -.++++..|=|.++.   ...+..|...++|||+|.-+.... ++..  .+.|.... +...+++.+--...+|.  ++.
T Consensus        64 ~gv~~~t~GpG~~n~---~~gia~A~~~~~Pvl~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~--~~~  138 (535)
T TIGR03394        64 LGVAAVTYGAGAFNM---VNAIAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLD--DPA  138 (535)
T ss_pred             ceEEEEecchHHHhh---hhHHHHHhhcCCCEEEEECCCCcccccCCceeEeeccchHHHHHhhhhheEEEEEeC--ChH
Confidence            345566668888883   457899999999999998654311 1110  01121112 34455555433344554  455


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          300 KVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       300 ~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ++.+.+++|+..++...||+.|++-.+=
T Consensus       139 ~~~~~~~~A~~~a~~~~gPv~i~iP~Dv  166 (535)
T TIGR03394       139 TAPAEIARVLGSARELSRPVYLEIPRDM  166 (535)
T ss_pred             HhHHHHHHHHHHHHHCCCCEEEEechhh
Confidence            8888899999999888899999997653

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.

>PRK08979 acetolactate synthase 3 catalytic subunit; Validated

Probab=92.47  E-value=0.53  Score=49.78  Aligned_cols=108  Identities=20%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|-|.+.+.          +.-.++++..|=|.++.   ...+..|...+.|||+|.-.-....  .........|...
T Consensus        56 ~mAdgyar~t----------g~~gv~~~t~GpG~~n~---l~gia~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~  120 (572)
T PRK08979         56 HMADGYARAT----------GKVGVVLVTSGPGATNT---ITGIATAYMDSIPMVVLSGQVPSNL--IGNDAFQECDMIG  120 (572)
T ss_pred             HHHHHHHHHh----------CCCeEEEECCCchHhHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCCCcccchhH
Confidence            4566666652          22334455558887772   5578899999999999975433111  0111122345566


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +++.+--...+|+  ++.++...+++|+..|+.+. ||+.|++-.+
T Consensus       121 ~~~~itk~~~~v~--~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~D  164 (572)
T PRK08979        121 ISRPVVKHSFLVK--DAEDIPEIIKKAFYIASTGRPGPVVIDLPKD  164 (572)
T ss_pred             HhhhceeEEEecC--CHHHHHHHHHHHHHHHhCCCCCcEEEecCHh
Confidence            6666544555665  55688889999999998865 9999998764

>PRK08266 hypothetical protein; Provisional

Probab=92.46  E-value=0.62  Score=48.77  Aligned_cols=109  Identities=17%  Similarity=0.079  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccC-Ccchh
Q 018048          203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATS-DPQIY  280 (361)
Q Consensus       203 ~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~-~~d~~  280 (361)
                      +|.|.+.+.          +.-.++++..|=|..+.   ...+..|...+.|+|+|+-.=. +.++.. ..+.. .+|..
T Consensus        58 ~A~gyar~t----------g~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g~~~~~~~~~~-~~~~~~~~d~~  123 (542)
T PRK08266         58 MAFGYARST----------GRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTGQIPSALIGKG-RGHLHEMPDQL  123 (542)
T ss_pred             HHHHHHHHh----------CCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEecCCChhhccCC-CCcceecccHh
Confidence            566666652          22234445558888773   5678999999999999985322 111110 01111 24666


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEec
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYR  327 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R  327 (361)
                      .+++.+--...+|+.  +.++...+++|+..++.+ .||+.|++-.+-
T Consensus       124 ~~~~~~tk~~~~v~~--~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv  169 (542)
T PRK08266        124 ATLRSFTKWAERIEH--PSEAPALVAEAFQQMLSGRPRPVALEMPWDV  169 (542)
T ss_pred             hHHhhhcceEEEeCC--HHHHHHHHHHHHHHHhhCCCCcEEEEeCHhH
Confidence            677766555667764  458888899999988875 599999997653

>PRK09107 acetolactate synthase 3 catalytic subunit; Validated

Probab=92.37  E-value=0.5  Score=50.27  Aligned_cols=95  Identities=22%  Similarity=0.214  Sum_probs=64.3

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|.++.   ...+..|-..+.|||+|.-.-....  .........|...+++.+---..+|+  ++.++...
T Consensus        76 gv~~~t~GPG~~N~---l~gia~A~~~~~Pvl~i~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~~~~v~--~~~~i~~~  148 (595)
T PRK09107         76 GVVLVTSGPGATNA---VTPLQDALMDSIPLVCITGQVPTHL--IGSDAFQECDTVGITRPCTKHNWLVK--DVNDLARV  148 (595)
T ss_pred             EEEEECCCccHhHH---HHHHHHHhhcCCCEEEEEcCCChhh--cCCCCCcccchhhhhhhheEEEEEeC--CHHHHHHH
Confidence            45555668888872   5578899999999999986544211  01111222455566665544455664  55688889


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +.+|++.++.+. ||+.|++-.+
T Consensus       149 l~~A~~~A~s~~~GPV~l~iP~D  171 (595)
T PRK09107        149 IHEAFHVATSGRPGPVVVDIPKD  171 (595)
T ss_pred             HHHHHHHhcCCCCceEEEecCCC
Confidence            999999998874 9999998754

>TIGR02720 pyruv_oxi_spxB pyruvate oxidase

Probab=92.33  E-value=0.65  Score=49.18  Aligned_cols=95  Identities=16%  Similarity=0.074  Sum_probs=63.3

Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~  302 (361)
                      -.++++..|=|..+.   ...+..|-..++|||+|.-.-.. ..+   .......|...+++.+--...+|.  ++.++.
T Consensus        64 ~gv~~~t~GPG~~n~---~~~i~~A~~~~~Pvl~I~G~~~~~~~~---~~~~q~id~~~~~~~vtk~~~~v~--~~~~~~  135 (575)
T TIGR02720        64 IGVCFGSAGPGATHL---LNGLYDAKEDHVPVLALVGQVPTTGMN---MDTFQEMNENPIYADVAVYNRTAM--TAESLP  135 (575)
T ss_pred             ceEEEeCCCCcHHHH---HHHHHHHhhcCCCEEEEecCCccccCC---CCCcceechhhhhhhcceEEEEeC--CHHHHH
Confidence            345556668887772   55789999999999999865431 111   111122344455555544444554  455888


Q ss_pred             HHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          303 EVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       303 ~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +.+.+|+..|....||+.|++-.+
T Consensus       136 ~~i~~A~~~A~~~~GPV~l~iP~D  159 (575)
T TIGR02720       136 HVIDEAIRRAYAHNGVAVVTIPVD  159 (575)
T ss_pred             HHHHHHHHHHhhCCCCEEEEECcc
Confidence            889999999888889999999765

Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.

>PRK08273 thiamine pyrophosphate protein; Provisional

Probab=92.27  E-value=0.48  Score=50.43  Aligned_cols=96  Identities=19%  Similarity=0.050  Sum_probs=62.8

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCC-ccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFG-MPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~G-i~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|..+.   ...+..|-..+.|||+|+-.=...  ..........|..++.+.+- -...+|+  ++.++..
T Consensus        69 gv~~~t~GPG~~n~---~~gi~~A~~d~vPvl~I~G~~~~~--~~~~~~~q~~d~~~l~~~vt~k~~~~v~--~~~~~~~  141 (597)
T PRK08273         69 GVCLATSGPGAIHL---LNGLYDAKLDHVPVVAIVGQQARA--ALGGHYQQEVDLQSLFKDVAGAFVQMVT--VPEQLRH  141 (597)
T ss_pred             EEEEECCCccHHHH---HHHHHHHHhcCCCEEEEecCCchh--hcCCCCCCccCHHHHHHHHHHHHeeEeC--CHHHHHH
Confidence            44555558888873   457889999999999998532211  10111112235555555543 3444565  4558888


Q ss_pred             HHHHHHHHHHcCCCCEEEEEEEec
Q 018048          304 VAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       304 al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      .+++|+..|....||+.|++-.+-
T Consensus       142 ~l~~A~~~A~~~~gPV~i~iP~Dv  165 (597)
T PRK08273        142 LVDRAVRTALAERTVTAVILPNDV  165 (597)
T ss_pred             HHHHHHHHHhhCCCCEEEEeCcch
Confidence            999999999988899999987653

>PRK06965 acetolactate synthase 3 catalytic subunit; Validated

Probab=92.25  E-value=0.76  Score=48.77  Aligned_cols=108  Identities=24%  Similarity=0.209  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|-|.+.+.          +.-.++++..|=|..+.   ...+..|...+.|||+|.-.=...  ...+......|...
T Consensus        73 ~~AdgYar~t----------g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~  137 (587)
T PRK06965         73 HAADGYARAT----------GKVGVALVTSGPGVTNA---VTGIATAYMDSIPMVVISGQVPTA--AIGQDAFQECDTVG  137 (587)
T ss_pred             HHHHHHHHHh----------CCCeEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCcc--ccCCCCcccccHHH
Confidence            3566666652          22334555557777772   567889999999999997432210  00111122245566


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.+.+--...+|.  ++.++.+.+.+|+..++.+ .||+.|++-.+
T Consensus       138 l~~~itk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~D  181 (587)
T PRK06965        138 ITRPIVKHNFLVK--DVRDLAETVKKAFYIARTGRPGPVVVDIPKD  181 (587)
T ss_pred             HhcCCcceeEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence            6666655566675  4558888999999999887 49999999765

>PRK06882 acetolactate synthase 3 catalytic subunit; Validated

Probab=92.05  E-value=0.73  Score=48.67  Aligned_cols=95  Identities=17%  Similarity=0.174  Sum_probs=63.7

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|-..+.|||+|.-.-....  .........|...+++.+--...+|.  ++.++...
T Consensus        69 gv~~~t~GpG~~N~---l~~i~~A~~~~~Pvlvi~G~~~~~~--~~~~~~q~~d~~~l~~~vtk~s~~v~--~~~~~~~~  141 (574)
T PRK06882         69 GCVLVTSGPGATNA---ITGIATAYTDSVPLVILSGQVPSNL--IGTDAFQECDMLGISRPVVKHSFIVK--NAEDIPST  141 (574)
T ss_pred             eEEEECCCccHHHH---HHHHHHHhhcCCCEEEEecCCCccc--cCCCcccccchhhhhhcccceEEEeC--CHHHHHHH
Confidence            34455558887772   5578899999999999986443111  01111122455666666555566675  55688888


Q ss_pred             HHHHHHHHHcC-CCCEEEEEEEe
Q 018048          305 AKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.+|+..++.+ .||+.|++-.+
T Consensus       142 l~~A~~~A~~~~~GPV~l~iP~D  164 (574)
T PRK06882        142 IKKAFYIASTGRPGPVVIDIPKD  164 (574)
T ss_pred             HHHHHHHHhcCCCCCEEEecCHH
Confidence            99999888775 49999999765

>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed

Probab=91.97  E-value=0.82  Score=48.22  Aligned_cols=109  Identities=23%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      .-+|-|.+.+.          +.-..+++..|=|.++.   ...|..|-..+.|||+|.-.-...  ..........|..
T Consensus        58 ~~~Adgyar~t----------g~~~v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~  122 (561)
T PRK06048         58 AHAADGYARAT----------GKVGVCVATSGPGATNL---VTGIATAYMDSVPIVALTGQVPRS--MIGNDAFQEADIT  122 (561)
T ss_pred             HHHHHHHHHHh----------CCCeEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEeccCCcc--ccCCCCccccchh
Confidence            34566666652          22344555568887772   567999999999999997532211  1111111224556


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      .+++.+--...+|+  ++.++...+.+|++.++.+ .||+.|++-.+
T Consensus       123 ~~~~~itk~s~~v~--~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~d  167 (561)
T PRK06048        123 GITMPITKHNYLVQ--DAKDLPRIIKEAFHIASTGRPGPVLIDLPKD  167 (561)
T ss_pred             hhccCcceEEEEeC--CHHHHHHHHHHHHHHHhcCCCCeEEEecChh
Confidence            66666544455664  4558888999999988876 49999999653

>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains

Probab=91.65  E-value=0.55  Score=44.12  Aligned_cols=113  Identities=19%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccc--cccccccCCc
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIG--MSHLRATSDP  277 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is--~~~~~q~~~~  277 (361)
                      ++.+++|++++             +.++++.+-=.+++.-  .|.|.+++-.++|+++++.|-. +-+  .+.+  ....
T Consensus        48 A~~~~~GAs~a-------------G~ra~t~ts~~Gl~lm--~e~l~~a~~~~~P~V~~~~~R~-g~~~g~~~~--~~q~  109 (230)
T PF01855_consen   48 AMEAAIGASAA-------------GARAMTATSGPGLNLM--AEPLYWAAGTELPIVIVVVQRA-GPSPGLSTQ--PEQD  109 (230)
T ss_dssp             HHHHHHHHHHT-------------T--EEEEEECCHHHHH--CCCHHHHHHTT--EEEEEEEB----SSSB--S--B-SH
T ss_pred             HHHHHHHHHhc-------------CCceEEeecCCccccc--HhHHHHHHHcCCCEEEEEEECC-CCCCCCcCc--CChh
Confidence            45678888887             4444454444444422  5678999999999888888754 211  1111  1112


Q ss_pred             chhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          278 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       278 d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                      |+.. ++-+|+.  .+...++.+.++....|.+-+.+..-|+++-...++. .|+..
T Consensus       110 D~~~-~~d~~~~--vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~~~-sh~~e  162 (230)
T PF01855_consen  110 DLMA-ARDSGWI--VLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGFLC-SHSRE  162 (230)
T ss_dssp             HHHH-TTTSS-E--EEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECCCC-TC-EE
T ss_pred             HHHH-HHhcCeE--EEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechhhh-cCccc
Confidence            3222 2244554  5556788899999999999999999999998877664 25543

This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....

>PRK05858 hypothetical protein; Provisional

Probab=91.60  E-value=0.82  Score=48.01  Aligned_cols=108  Identities=13%  Similarity=0.067  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|-|.+.+.          +.-.++++..|=|..+.   ...+..|...+.|||+|.-+-....  .........|...
T Consensus        56 ~~AdGyar~t----------g~~gv~~~t~GpG~~n~---~~~i~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~  120 (542)
T PRK05858         56 FAAEAWAKLT----------RVPGVAVLTAGPGVTNG---MSAMAAAQFNQSPLVVLGGRAPALR--WGMGSLQEIDHVP  120 (542)
T ss_pred             HHHHHHHHhc----------CCCeEEEEcCCchHHHH---HHHHHHHHhcCCCEEEEeCCCCccc--CCCCCCcccchhh
Confidence            4566666661          12234444446766662   5689999999999998875433111  0111112245566


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +++.+--...+|+.  +.++.+.+.+|+..+... .||+.|++-.+
T Consensus       121 l~~~~tk~~~~v~~--~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  164 (542)
T PRK05858        121 FVAPVTKFAATAQS--AENAGRLVDQALQAAVTPHRGPVFVDFPMD  164 (542)
T ss_pred             hhhhhhceEEEeCC--HHHHHHHHHHHHHHHcCCCCCeEEEEcChh
Confidence            66666656667754  558888999999988875 58999998654

>PRK07092 benzoylformate decarboxylase; Reviewed

Probab=91.56  E-value=1.3  Score=46.23  Aligned_cols=108  Identities=16%  Similarity=0.056  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-cCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-TSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+   ....+..|...+.|||+|+-.-.+..  ..... ....|..
T Consensus        62 ~~Adgyar~t----------g~~~v~~vt~gpG~~N---~~~gia~A~~~~~Pvl~i~g~~~~~~--~~~~~~~~~~d~~  126 (530)
T PRK07092         62 GMADGYAQAT----------GNAAFVNLHSAAGVGN---AMGNLFTAFKNHTPLVITAGQQARSI--LPFEPFLAAVQAA  126 (530)
T ss_pred             HHHHHHHHHh----------CCceEEEeccCchHHH---HHHHHHHHhhcCCCEEEEecCCcccc--cCccchhcccCHH
Confidence            3566776662          2334444556777775   26689999999999998876433211  11110 0123445


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+.+.+--...+|  .++.++.+.+.+|+..++..+ ||+.|++-.+
T Consensus       127 ~l~~~~tk~~~~v--~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d  171 (530)
T PRK07092        127 ELPKPYVKWSIEP--ARAEDVPAAIARAYHIAMQPPRGPVFVSIPYD  171 (530)
T ss_pred             Hhhcccccceeec--CCHHHHHHHHHHHHHHHhcCCCCcEEEEccHH
Confidence            5555554444455  456788889999999998875 8999999754

>PRK08327 acetolactate synthase catalytic subunit; Validated

Probab=91.08  E-value=0.6  Score=49.37  Aligned_cols=97  Identities=15%  Similarity=0.180  Sum_probs=63.8

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccc-----cccccCC-cchhhccccCCccEEEEeCCC
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMS-----HLRATSD-PQIYKKGPAFGMPGFHVDGMD  297 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~-----~~~q~~~-~d~~~~A~a~Gi~~~~Vdg~D  297 (361)
                      .++++..|=|..+.   ...|..|...+.|||+|+-+-.+.. +..     ....... .|...+++.+--...+|+  +
T Consensus        77 gv~~~t~GPG~~N~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~--~  151 (569)
T PRK08327         77 QAVMVHVDVGTANA---LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIR--R  151 (569)
T ss_pred             eEEEEecCHHHHHH---HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccC--C
Confidence            45555568887772   5679999999999999987543211 100     0001112 355666665544555665  4


Q ss_pred             HHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          298 VLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.++..++.+|+..++.+ .||+.|++-.+
T Consensus       152 ~~~~~~~l~~A~~~a~~~~~GPV~i~iP~D  181 (569)
T PRK08327        152 GDQIGEVVARAIQIAMSEPKGPVYLTLPRE  181 (569)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEECcHH
Confidence            458888999999999876 69999999754

>PRK08527 acetolactate synthase 3 catalytic subunit; Validated

Probab=90.79  E-value=1.1  Score=47.32  Aligned_cols=95  Identities=19%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|.++.   ...+..|...+.|||+|.-.=...  ...+......|...+++.+--...+|  +++.++..+
T Consensus        68 gv~~~t~GpG~~n~---~~gla~A~~~~~Pvl~i~G~~~~~--~~~~~~~q~~d~~~~~~~~tk~s~~v--~~~~~i~~~  140 (563)
T PRK08527         68 GVAIVTSGPGFTNA---VTGLATAYMDSIPLVLISGQVPNS--LIGTDAFQEIDAVGISRPCVKHNYLV--KSIEELPRI  140 (563)
T ss_pred             EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCcc--ccCCCCCcccchhhhhhcccceEEEc--CCHHHHHHH
Confidence            45555568887772   567889999999999987432210  00011112235555666554444455  456699999


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +++|++.++.+. ||+.|++-.+
T Consensus       141 l~~A~~~a~s~~~GPV~l~iP~D  163 (563)
T PRK08527        141 LKEAFYIARSGRPGPVHIDIPKD  163 (563)
T ss_pred             HHHHHHHHhcCCCCcEEEEcCHh
Confidence            999999998765 8999998754

>CHL00099 ilvB acetohydroxyacid synthase large subunit

Probab=90.79  E-value=1.1  Score=47.63  Aligned_cols=94  Identities=21%  Similarity=0.281  Sum_probs=62.2

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|.++.   ...|..|...+.|||+|.-.-. +.++.   ......|...+++.+--...+|+  ++.++.+
T Consensus        78 gv~~~t~GPG~~N~---l~gl~~A~~~~~Pvl~I~G~~~~~~~~~---~~~q~~d~~~~~~~~tk~~~~v~--~~~~i~~  149 (585)
T CHL00099         78 GVCFATSGPGATNL---VTGIATAQMDSVPLLVITGQVGRAFIGT---DAFQEVDIFGITLPIVKHSYVVR--DARDISR  149 (585)
T ss_pred             EEEEECCCCcHHHH---HHHHHHHhhcCCCEEEEecCCCccccCC---CCccccchhhhhcCceeEEEEeC--CHHHHHH
Confidence            44555558887772   5578899999999999986432 11111   11112355555665544555665  5568888


Q ss_pred             HHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          304 VAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       304 al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+++|++.++.+. ||+.|++-.+
T Consensus       150 ~l~~A~~~A~~~~~GPV~l~iP~D  173 (585)
T CHL00099        150 IVAEAFYIAKHGRPGPVLIDIPKD  173 (585)
T ss_pred             HHHHHHHHHccCCCCeEEEecChh
Confidence            9999999888764 8999998754

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=90.70  E-value=0.85  Score=46.49  Aligned_cols=110  Identities=13%  Similarity=0.072  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|-|.+.+.          +.-.++++..|=|..+.   .-.|..|-..+.|||+|.-.-....  .........|..+
T Consensus        52 ~mAdgyar~t----------g~~gv~~~t~GpG~~N~---l~gl~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~  116 (432)
T TIGR00173        52 FFALGLAKAS----------GRPVAVVCTSGTAVANL---LPAVIEASYSGVPLIVLTADRPPEL--RGCGANQTIDQPG  116 (432)
T ss_pred             HHHHHHHhcc----------CCCEEEEECCcchHhhh---hHHHHHhcccCCcEEEEeCCCCHHH--hCCCCCcccchhh
Confidence            3466666651          22344555557777772   4578899999999999986543111  0011111234445


Q ss_pred             ccccCCccEEEEeCCC----HHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMD----VLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D----~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +++.+--...+|...+    +..+...+++|+..+..+. ||+.|++-.+
T Consensus       117 ~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d  166 (432)
T TIGR00173       117 LFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFR  166 (432)
T ss_pred             HHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCC
Confidence            5555544455664433    1126678899998888754 9999999754

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>PRK06546 pyruvate dehydrogenase; Provisional

Probab=90.31  E-value=1.4  Score=46.77  Aligned_cols=96  Identities=15%  Similarity=0.022  Sum_probs=60.6

Q ss_pred             CceEEE--EECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          224 DHVTLA--FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       224 ~~~Vv~--~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      +++.+|  .+|=|..+.   ...+..|-..+.|||+|.-+-...  ..........|...+++.+--...+|+  ++.++
T Consensus        65 gk~~v~~v~~GpG~~N~---~~gl~~A~~~~~Pvl~I~G~~~~~--~~~~~~~Qe~d~~~l~~~~tk~~~~v~--~~~~~  137 (578)
T PRK06546         65 GKLAVCAGSCGPGNLHL---INGLYDAHRSGAPVLAIASHIPSA--QIGSGFFQETHPDRLFVECSGYCEMVS--SAEQA  137 (578)
T ss_pred             CCceEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEeCCCCcc--ccCCCCccccChhhhcccceeeEeEeC--CHHHH
Confidence            334444  457777772   456889999999999998533211  000111112344455554433444554  45588


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          302 REVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       302 ~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ...+.+|++.+....||+.|++-.+
T Consensus       138 ~~~i~~A~~~A~~~~GPV~l~lP~D  162 (578)
T PRK06546        138 PRVLHSAIQHAVAGGGVSVVTLPGD  162 (578)
T ss_pred             HHHHHHHHHHHhcCCCCEEEEcChh
Confidence            8899999999998889999998754

>TIGR02418 acolac_catab acetolactate synthase, catabolic

Probab=90.00  E-value=1.4  Score=46.05  Aligned_cols=95  Identities=20%  Similarity=0.050  Sum_probs=62.1

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      .++++..|=|..+.   ...+..|...+.|+|+|+-.-....  .........|...+++.+=-...++  .++.++.+.
T Consensus        63 gv~~~t~GpG~~n~---l~gl~~A~~~~~Pvl~I~G~~~~~~--~~~~~~q~~d~~~~~~~~tk~~~~i--~~~~~~~~~  135 (539)
T TIGR02418        63 GVALVTSGPGCSNL---VTGLATANSEGDPVVAIGGQVKRAD--LLKLTHQSMDNVALFRPITKYSAEV--QDPDALSEV  135 (539)
T ss_pred             eEEEECCCCCHhHH---HHHHHHHhhcCCCEEEEeCCCcccc--cccCcccccchhhhhhcceeeeeec--CCHHHHHHH
Confidence            45555567877772   5578899999999999987433111  0111122345555665543334445  466688888


Q ss_pred             HHHHHHHHHcC-CCCEEEEEEEe
Q 018048          305 AKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.+|++.+... .||+.|++-.+
T Consensus       136 ~~~A~~~a~~~~~GPV~l~iP~d  158 (539)
T TIGR02418       136 VANAFRAAESGKPGAAFVSLPQD  158 (539)
T ss_pred             HHHHHHHHhcCCCCCEEEEcChh
Confidence            99999988876 48999998765

Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.

>PLN02573 pyruvate decarboxylase

Probab=89.72  E-value=1.5  Score=46.59  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-ccccc-ccc-cCCc---chhhccccCCccEEEEeCCC
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH-LRA-TSDP---QIYKKGPAFGMPGFHVDGMD  297 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~-~~q-~~~~---d~~~~A~a~Gi~~~~Vdg~D  297 (361)
                      -.++++..|=|.++.   ...+..|...+.|||+|.-.-... ++... ..+ ...+   +..++++.+--...+|.  +
T Consensus        79 ~gv~~~t~GpG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~--~  153 (578)
T PLN02573         79 VGACVVTFTVGGLSV---LNAIAGAYSENLPVICIVGGPNSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVIN--N  153 (578)
T ss_pred             CCeEEEecCccHHHH---HHHHHHHHHhCCCEEEEECCCChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeC--C
Confidence            456666678887772   456888889999999998654321 11000 000 0001   12234444444445554  4


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          298 VLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +.++.+.+++|+..|+...||+.|++-.+
T Consensus       154 ~~~~~~~l~~A~~~A~~~~gPV~l~iP~D  182 (578)
T PLN02573        154 LEDAHELIDTAISTALKESKPVYISVSCN  182 (578)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEeehh
Confidence            55888889999999999889999999665

>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed

Probab=89.49  E-value=3.9  Score=41.51  Aligned_cols=112  Identities=17%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      ++.+++|++++             +.++.+.+-=.+++--  .|.|.+|+-..+|+++++.|-.  ++.+........|+
T Consensus        62 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm--~E~l~~aag~~lP~V~vv~~R~--~~~p~~i~~d~~D~  124 (394)
T PRK08367         62 AISACVGASAA-------------GVRTFTATASQGLALM--HEVLFIAAGMRLPIVMAIGNRA--LSAPINIWNDWQDT  124 (394)
T ss_pred             HHHHHHHHHhh-------------CCCeEeeeccchHHHH--hhHHHHHHHccCCEEEEECCCC--CCCCCCcCcchHHH
Confidence            46789999988             4445555544445522  7899999999999888885553  33221111011232


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCCC
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYRFRGHS  332 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~--~gP~lIev~t~R~~gHs  332 (361)
                      . -.+-.|+  +.+-..++++.++-...|.+-+.+.  .-|+++-...++. +|.
T Consensus       125 ~-~~rd~g~--~~~~a~~~QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf~~-sH~  175 (394)
T PRK08367        125 I-SQRDTGW--MQFYAENNQEALDLILIAFKVAEDERVLLPAMVGFDAFIL-THT  175 (394)
T ss_pred             H-hccccCe--EEEeCCCHHHHHHHHHHHHHHHHHhCcCCCEEEEechhhh-cCc
Confidence            2 1223443  3344578899999999999988843  4799998888774 464

>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]

Probab=88.98  E-value=2.3  Score=42.65  Aligned_cols=109  Identities=19%  Similarity=0.200  Sum_probs=73.2

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      ++.+++|++++            .-+..-...|.|-..|   +|.|..|+-..+|+++++.+..-. ++.........|+
T Consensus        59 a~s~v~GA~~a------------Gar~~TaTSg~Gl~Lm---~E~l~~a~~~~~P~Vi~~~~R~~p-s~g~p~~~dq~D~  122 (365)
T COG0674          59 AISAVIGASYA------------GARAFTATSGQGLLLM---AEALGLAAGTETPLVIVVAQRPLP-STGLPIKGDQSDL  122 (365)
T ss_pred             HHHHHHHHHhh------------CcceEeecCCccHHHH---HHHHHHHHhccCCeEEEEeccCcC-CCcccccccHHHH
Confidence            56789999988            3455566667776665   788999999999999998888622 1111011112233


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ...-.+ |++-+...  ++++.+.....|...|.+..-|+++-..-++
T Consensus       123 ~~~r~~-g~~~~~~~--s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~~  167 (365)
T COG0674         123 MAARDT-GFPILVSA--SVQEAFDLTLLAFNIAEKVLTPVIVLLDGFL  167 (365)
T ss_pred             HHHHcc-CceEEeec--cHHHHHHHHHHHHHHHHHhcCCEEEeeccch
Confidence            222222 77777766  7778888888888888887889887654444

>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed

Probab=88.80  E-value=2.3  Score=43.23  Aligned_cols=108  Identities=17%  Similarity=0.138  Sum_probs=72.9

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      ++.+++|++++             +.++.+.+-=.+++--  .|.|.+|+-..+|+++++.+-+..-.++  .+...+|+
T Consensus        68 A~~~~~GAs~a-------------GaRa~TaTS~~Gl~lm--~E~l~~aa~~~~P~V~~~~~R~~~~~~~--i~~d~~D~  130 (407)
T PRK09622         68 AMSACVGAAAA-------------GGRVATATSSQGLALM--VEVLYQASGMRLPIVLNLVNRALAAPLN--VNGDHSDM  130 (407)
T ss_pred             HHHHHHHHHhh-------------CcCEEeecCcchHHHH--hhHHHHHHHhhCCEEEEEeccccCCCcC--CCchHHHH
Confidence            46789999988             4445555555555532  7999999999999888888776221111  11122343


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC--CCCEEEEEEEec
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG--EGPTLVECETYR  327 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~--~gP~lIev~t~R  327 (361)
                      .. ++.-|  .+.....+++++++....|.+-+.+.  .-|+++-...++
T Consensus       131 ~~-~r~~g--~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~~  177 (407)
T PRK09622        131 YL-SRDSG--WISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGFL  177 (407)
T ss_pred             HH-HhcCC--eEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechhh
Confidence            33 22223  55667788999999999999988775  789998776654

>PRK06154 hypothetical protein; Provisional

Probab=88.46  E-value=1.9  Score=45.56  Aligned_cols=93  Identities=19%  Similarity=0.194  Sum_probs=60.3

Q ss_pred             ceEEE--EECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048          225 HVTLA--FFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (361)
Q Consensus       225 ~~Vv~--~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~  302 (361)
                      ++.+|  ..|=|.++.   ...|..|...+.|||+|+-...... .   .+....|...+++.+--...+|+  ++.++.
T Consensus        81 ~~gv~~~t~GPG~~N~---~~gla~A~~~~~Pvl~i~G~~~~~~-~---~~~~~~d~~~~~~~vtk~~~~v~--~~~~~~  151 (565)
T PRK06154         81 RVGVFAVQYGPGAENA---FGGVAQAYGDSVPVLFLPTGYPRGS-T---DVAPNFESLRNYRHITKWCEQVT--LPDEVP  151 (565)
T ss_pred             CCEEEEECCCccHHHH---HHHHHHHhhcCCCEEEEeCCCCccc-c---cCCCCcchhhhHhhcceeEEECC--CHHHHH
Confidence            44454  458887772   5679999999999999985443111 0   01111233344554433344554  555888


Q ss_pred             HHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          303 EVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       303 ~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      +.+++|++.++.+ .||+.|++-.+
T Consensus       152 ~~i~~A~~~A~s~~~GPV~l~iP~D  176 (565)
T PRK06154        152 ELMRRAFTRLRNGRPGPVVLELPVD  176 (565)
T ss_pred             HHHHHHHHHHhcCCCceEEEecchH
Confidence            8999999999885 59999998765

>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]

Probab=86.57  E-value=3.1  Score=42.54  Aligned_cols=106  Identities=25%  Similarity=0.197  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhc
Q 018048          203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKK  282 (361)
Q Consensus       203 ~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~  282 (361)
                      +|-|.+.+.          ++..+|++..|-|+.+-   ..-|.-|-.-+.|++.+-  .+..-+.+..+.....|+..+
T Consensus       144 aAegYaR~s----------gKPGvvlvTSGPGATNv---vtp~ADAlaDg~PlVvft--GQVptsaIGtDAFQEadiVgi  208 (675)
T KOG4166|consen  144 AAEGYARSS----------GKPGVVLVTSGPGATNV---VTPLADALADGVPLVVFT--GQVPTSAIGTDAFQEADIVGI  208 (675)
T ss_pred             hhhhhhhhc----------CCCcEEEEecCCCcccc---cchhhHHhhcCCcEEEEe--cccchhhcccchhccCCeeee
Confidence            355666652          45678999999999982   234667777889966553  332222222222333455555


Q ss_pred             cccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEE
Q 018048          283 GPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECET  325 (361)
Q Consensus       283 A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t  325 (361)
                      -+++-=..+-|  .|++++..-+.+|++.|-.++ ||+|+++.-
T Consensus       209 sRScTKwNvmV--kdVedlPrrI~EAFeiATSGRPGPVLVDlPK  250 (675)
T KOG4166|consen  209 SRSCTKWNVMV--KDVEDLPRRIEEAFEIATSGRPGPVLVDLPK  250 (675)
T ss_pred             eeccceeheee--ecHHHhhHHHHHHhhhhccCCCCCeEeeCcH
Confidence            55543223333  578899999999999987764 899998843

>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase

Probab=86.57  E-value=0.35  Score=49.30  Aligned_cols=54  Identities=13%  Similarity=-0.058  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc--------ccccc--cCCccccccccHHHHHHHH
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS--------KEHNL--LGGFAFIGEGIPVATGAAF  209 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~--------~~~~~--~~~~g~mG~~lP~AiGaA~  209 (361)
                      +++|..++.++....++  +++.|+|++..|.        .+.++  ..+.|+||+++|.|||+++
T Consensus       366 ~i~p~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g~mG~glp~aiGa~~  431 (432)
T TIGR00173       366 PLSELSLARALSQLLPEGAALFVGNSMPIRDLDTFAQPPDKPIRVFANRGASGIDGTLSTALGIAL  431 (432)
T ss_pred             CccHHHHHHHHHHhCCCCCeEEEECCHHHHHHHhcCCcCCCCceEEecCchhhHHHHHHHHHHhhc
Confidence            47888999999988874  5667777754442        23444  4677999999999999986

2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.

>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]

Probab=86.13  E-value=1.4  Score=38.40  Aligned_cols=105  Identities=15%  Similarity=0.250  Sum_probs=66.4

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHH-hhhCCCCeEEEEEcCCcc-cccccccccC-C
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM-AALWKLPIVFVVENNLWA-IGMSHLRATS-D  276 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~t-A~~~~LPvi~VV~NN~y~-is~~~~~q~~-~  276 (361)
                      +++.+.|+.+|            .+.+.+.+- ..+....  ..+|.. -..+++|++.++..-++- -+.+  -|.+ .
T Consensus        54 g~GIcAGa~lA------------Gkk~ailmQ-nsGlGNs--iNal~SL~~ty~iPl~ml~ShRG~~~E~i~--AQVpmG  116 (172)
T COG4032          54 GVGICAGAYLA------------GKKPAILMQ-NSGLGNS--INALASLYVTYKIPLLMLASHRGVLKEGIE--AQVPMG  116 (172)
T ss_pred             ceeeehhhhhc------------CCCcEEEEe-ccCcchH--HHHHHHHHHHhccchhhhhhccchhhcCCc--cccccc
Confidence            34567899998            233334333 2222222  223322 247899999999888732 1222  2222 2


Q ss_pred             cchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          277 PQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       277 ~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      ...-++-+..++|.+++.+..  +-+..+..+...+.+...|+.+-+
T Consensus       117 r~~~kiLe~~~lpt~t~~~p~--Ea~~li~~~~~~a~~~s~pv~vll  161 (172)
T COG4032         117 RALPKILEGLELPTYTIIGPE--EALPLIENAILDAFENSRPVAVLL  161 (172)
T ss_pred             hhhHHHHhhcCCcccccCCHH--HHHHHHHHHHHHHHHcCCceEEEe
Confidence            234556667899999998775  667788999999999999987655

>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family

Probab=83.64  E-value=5.7  Score=41.67  Aligned_cols=96  Identities=14%  Similarity=0.103  Sum_probs=54.6

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccc-----c--cccCCcchhhccccCCccEEEEeCCC
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH-----L--RATSDPQIYKKGPAFGMPGFHVDGMD  297 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~-----~--~q~~~~d~~~~A~a~Gi~~~~Vdg~D  297 (361)
                      .++++..|=|+++.   ...|..|-..+.|||+|.-.-... ...+     +  ......++.++.+..-.....++   
T Consensus        65 gv~~~t~GPG~~n~---~~gla~A~~d~~Pvl~I~G~~~~~-~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~---  137 (539)
T TIGR03393        65 AALLTTFGVGELSA---INGIAGSYAEHLPVIHIVGAPGTA-AQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLT---  137 (539)
T ss_pred             eEEEEecCccHHHH---hhHHHHHhhccCCEEEEECCCCcc-hhhcCceeeeecCCCchHHHHHHhhceEEEEEEeC---
Confidence            45556669988882   446888999999999998643311 0000     0  00001122233333222222332   


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          298 VLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      +.++.+.+.+|++.|....||+.|++-.+=
T Consensus       138 ~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv  167 (539)
T TIGR03393       138 EQNATAEIDRVITTALRERRPGYLMLPVDV  167 (539)
T ss_pred             hhhhHHHHHHHHHHHHhcCCCEEEEecccc
Confidence            234455677788777777899999997754

A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.

>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit

Probab=83.61  E-value=6.2  Score=42.11  Aligned_cols=162  Identities=19%  Similarity=0.174  Sum_probs=91.5

Q ss_pred             CCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCcccccccc
Q 018048          122 YNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGI  201 (361)
Q Consensus       122 ~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~l  201 (361)
                      ..|.||++.|+..+   +--++..|..        -|..+++..|....+.     +|-...|..     .-.    .++
T Consensus         5 ~~GneA~A~g~~~a---g~~~~~~YPi--------TP~t~i~e~l~~~~~~-----~~~~~~~~~-----~E~----~a~   59 (595)
T TIGR03336         5 LLGNEAIARGALEA---GVGVAAAYPG--------TPSSEITDTLAKVAKR-----AGVYFEWSV-----NEK----VAV   59 (595)
T ss_pred             ecHHHHHHHHHHHc---CCEEEEecCC--------CCHHHHHHHHHHhhhh-----ccEEEEECc-----CHH----HHH
Confidence            45999888766543   4335555642        2444666666544331     111111111     011    134


Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhh--hCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAA--LWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~--~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      .+|+|+++|             +.++++.+-=.+++--  .|.|..++  ...+|+++++-|.. +-+..+..|   .|.
T Consensus        60 ~~~~GAs~a-------------G~ra~t~ts~~Gl~~~--~e~l~~~~~~g~~~~iV~~~~~~~-gp~~~~~~q---~d~  120 (595)
T TIGR03336        60 EVAAGAAWS-------------GLRAFCTMKHVGLNVA--ADPLMTLAYTGVKGGLVVVVADDP-SMHSSQNEQ---DTR  120 (595)
T ss_pred             HHHHHHHhc-------------CcceEEEccCCchhhh--HHHhhhhhhhcCcCceEEEEccCC-CCccchhhH---hHH
Confidence            589999998             4445555544445421  44554554  33677777777653 322111122   232


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (361)
                      . .++-.+++  ..+-.+++++++....|++-+.+..-|++|-...  ..+|+
T Consensus       121 ~-~~~~~~~~--vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~--~l~h~  168 (595)
T TIGR03336       121 H-YAKFAKIP--CLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT--RISHM  168 (595)
T ss_pred             H-HHHhcCCe--EECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee--eeccc
Confidence            1 23345777  4556678899999999999999999999998865  34454

Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.

>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding

Probab=83.39  E-value=3.2  Score=49.60  Aligned_cols=108  Identities=17%  Similarity=0.084  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      =+|.|.+.+.          +.-.+++|..|=|..+.   +-++..|..-+.|+|+|.-+-....-  ........|...
T Consensus       353 fmAdGyAR~T----------gkpgV~i~TsGPG~tN~---l~av~eA~~d~vPlLvItgd~p~~~~--~~ga~Q~iDq~~  417 (1655)
T PLN02980        353 FHALGYARGS----------LKPAVVITSSGTAVSNL---LPAVVEASQDFVPLLLLTADRPPELQ--DAGANQAINQVN  417 (1655)
T ss_pred             HHHHHHHHHh----------CCCEEEEEeCcHHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHh--cCCCCcccchhh
Confidence            4567777662          23344555557776662   66899999999999999876542210  011111234555


Q ss_pred             ccccCCccEEEEeCCCH----HHHHHHHHHHHHHHHcCC-CCEEEEEE
Q 018048          282 KGPAFGMPGFHVDGMDV----LKVREVAKEAIERARRGE-GPTLVECE  324 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~----~~v~~al~~Al~~ar~~~-gP~lIev~  324 (361)
                      +++.+--..++|...+-    ..+...+++|+..++.+. ||+.|++-
T Consensus       418 lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP  465 (1655)
T PLN02980        418 HFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCP  465 (1655)
T ss_pred             HHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECc
Confidence            55555555556644331    013467888888888874 99999997

>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2

Probab=82.81  E-value=4.6  Score=35.93  Aligned_cols=103  Identities=19%  Similarity=0.173  Sum_probs=53.3

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCC-CceEEEEECCCcccC---cchHHHHH-HhhhCCCCeEEEEEcCCccccccccccc
Q 018048          200 GIPVATGAAFTSKYRREVLKEADC-DHVTLAFFGDGTCNN---GQFFECLN-MAALWKLPIVFVVENNLWAIGMSHLRAT  274 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~-~~~Vv~~~GDGs~~~---g~~~eeL~-tA~~~~LPvi~VV~NN~y~is~~~~~q~  274 (361)
                      .+..|.|.|++           ++ ..+++..++|  |..   -...+.+. .....++|+. |+..-+++.+..-....
T Consensus        60 ~vg~a~GlA~~-----------G~~~~~~~~~f~~--F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH~  125 (178)
T PF02779_consen   60 MVGMAAGLALA-----------GGLRPPVESTFAD--FLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTHH  125 (178)
T ss_dssp             HHHHHHHHHHH-----------SSSEEEEEEEEGG--GGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTTS
T ss_pred             ccceeeeeeec-----------ccccceeEeeccc--cccccchhhhhhhhhhhhcccceec-ceeecCccccccccccc
Confidence            35678888887           42 3445555554  443   11133333 6778899988 66555444333222222


Q ss_pred             CCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHc--CCCCEEEEE
Q 018048          275 SDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARR--GEGPTLVEC  323 (361)
Q Consensus       275 ~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~--~~gP~lIev  323 (361)
                      +..|..-+ +  .+|+++| .-.|+.++..    +++++.+  .++|++|-.
T Consensus       126 s~~d~~~~-~--~iPg~~v~~Psd~~e~~~----~l~~a~~~~~~~P~~ir~  170 (178)
T PF02779_consen  126 SIEDEAIL-R--SIPGMKVVVPSDPAEAKG----LLRAAIRRESDGPVYIRE  170 (178)
T ss_dssp             SSSHHHHH-H--TSTTEEEEE-SSHHHHHH----HHHHHHHSSSSSEEEEEE
T ss_pred             cccccccc-c--cccccccccCCCHHHHHH----HHHHHHHhCCCCeEEEEe
Confidence            23333332 2  3555543 3456666554    4445555  679999865

2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....

>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family

Probab=82.30  E-value=21  Score=34.31  Aligned_cols=85  Identities=18%  Similarity=0.208  Sum_probs=59.2

Q ss_pred             eEEEEECCCc--ccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccccc----C-CcchhhccccCCccEEEEeCCC
Q 018048          226 VTLAFFGDGT--CNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRAT----S-DPQIYKKGPAFGMPGFHVDGMD  297 (361)
Q Consensus       226 ~Vv~~~GDGs--~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~----~-~~d~~~~A~a~Gi~~~~Vdg~D  297 (361)
                      .++.++.||.  ++.+..-..+.-|.+.++-+++|+.+|. ..-|.....+.    . .+.+......|+.|++.|= .|
T Consensus       166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~~~~~~SI~d~~~~~~~~~~~~~l~~Yl~~fpfpYy~~~-~~  244 (266)
T cd01460         166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDNPDNKQSILDIKVVSFKNDKSGVITPYLDEFPFPYYVIV-RD  244 (266)
T ss_pred             cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcCCCCCCCcccccccccCCCCccHHHHHHhcCCCCeEEEe-cC
Confidence            7999999999  7777655667888888999888888774 22232211111    1 1155667778999999764 46


Q ss_pred             HHHHHHHHHHHHHH
Q 018048          298 VLKVREVAKEAIER  311 (361)
Q Consensus       298 ~~~v~~al~~Al~~  311 (361)
                      +.++.+.+..++..
T Consensus       245 ~~~lp~~l~~~lrq  258 (266)
T cd01460         245 LNQLPSVLSDALRQ  258 (266)
T ss_pred             hhHhHHHHHHHHHH
Confidence            77888888777754

The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.

>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase

Probab=81.67  E-value=5.4  Score=42.83  Aligned_cols=90  Identities=16%  Similarity=0.167  Sum_probs=49.6

Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEe-CCCHHHHH
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVD-GMDVLKVR  302 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~  302 (361)
                      -++++++  =+.|.+-.+-|-.+.++.+++||++++...++. +..-.......|++-   --.+|+++|= -.|+.++.
T Consensus       376 ~~Pvv~~--~a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~-g~dG~tH~~~~dia~---lr~iPgl~V~~Psd~~e~~  449 (617)
T TIGR00204       376 YKPFVAI--YSTFLQRAYDQVVHDVCIQKLPVLFAIDRAGIV-GADGETHQGAFDISY---LRCIPNMVIMAPSDENELR  449 (617)
T ss_pred             CEEEEEe--cHHHHHHHHHHHHHHHHhcCCCEEEEEECCCcC-CCCCcccccchHHHH---HhcCCCcEEEeeCCHHHHH
Confidence            4455554  456775433344567789999999998877642 221111112233332   2356777553 34555655


Q ss_pred             HHHHHHHHHHHcC-CCCEEEEE
Q 018048          303 EVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       303 ~al~~Al~~ar~~-~gP~lIev  323 (361)
                      ..++    .+.+. ++|++|-.
T Consensus       450 ~~l~----~a~~~~~~Pv~ir~  467 (617)
T TIGR00204       450 QMLY----TGYHYDDGPIAVRY  467 (617)
T ss_pred             HHHH----HHHhCCCCCEEEEE
Confidence            4444    44443 48998854

DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).

>TIGR00232 tktlase_bact transketolase, bacterial and yeast

Probab=81.39  E-value=5.2  Score=43.28  Aligned_cols=81  Identities=21%  Similarity=0.256  Sum_probs=47.5

Q ss_pred             cccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHH
Q 018048          235 TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERAR  313 (361)
Q Consensus       235 s~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar  313 (361)
                      .|.+ ...+.+.+++..++||++|....+++++..-....+   +.+++---.+|.+.| .-.|..++..    +++++.
T Consensus       430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~THq~---iedia~lr~iPn~~v~~PaD~~E~~~----~~~~a~  501 (653)
T TIGR00232       430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTHQP---IEQLASLRAIPNLSVWRPCDGNETAA----AWKYAL  501 (653)
T ss_pred             HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCcccCC---HHHHHHHhcCCCCEEEeeCCHHHHHH----HHHHHH
Confidence            5553 346778888999999999998877655432111112   333322234666654 3345555544    444444


Q ss_pred             -cCCCCEEEEE
Q 018048          314 -RGEGPTLVEC  323 (361)
Q Consensus       314 -~~~gP~lIev  323 (361)
                       ..++|++|-.
T Consensus       502 ~~~~gP~~irl  512 (653)
T TIGR00232       502 ESQDGPTALIL  512 (653)
T ss_pred             hcCCCcEEEEE
Confidence             4678988854

This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
3exe_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		3e-47
3exf_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		7e-47
2ozl_A	365	Human Pyruvate Dehydrogenase S264e Variant Length =		7e-47
3exi_A	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		9e-47
3exh_C	382	Crystal Structure Of The Pyruvate Dehydrogenase (E1		2e-46
1ni4_A	365	Human Pyruvate Dehydrogenase Length = 365		5e-43
1um9_A	367	Branched-chain 2-oxo Acid Dehydrogenase (e1) From T		9e-38
1w85_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1		6e-24
3duf_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		7e-24
1w88_A	368	The Crystal Structure Of Pyruvate Dehydrogenase E1(		1e-23
3dva_A	369	Snapshots Of Catalysis In The E1 Subunit Of The Pyr		3e-23
1dtw_A	400	Human Branched-Chain Alpha-Keto Acid Dehydrogenase		4e-20
2j9f_A	400	Human Branched-Chain Alpha-Ketoacid Dehydrogenase-		5e-20
2bff_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		7e-20
1x7y_A	400	Crystal Structure Of The Human Mitochondrial Branch		9e-20
1x7w_A	400	Crystal Structure Of The Human Mitochondrial Branch		1e-19
1x7z_A	400	Crystal Structure Of The Human Mitochondrial Branch		1e-19
1x7x_A	400	Crystal Structure Of The Human Mitochondrial Branch		1e-19
1x80_A	400	Crystal Structure Of The Human Mitochondrial Branch		1e-19
2bfe_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		4e-19
2bfb_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		5e-19
1v16_A	400	Crosstalk Between Cofactor Binding And The Phosphor		6e-19
1olu_A	400	Roles Of His291-Alpha And His146-Beta' In The Reduc		6e-19
1v1m_A	400	Crosstalk Between Cofactor Binding And The Phosphor		7e-19
2bfc_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		2e-18
1v11_A	400	Crosstalk Between Cofactor Binding And The Phosphor		4e-18
2bfd_A	400	Reactivity Modulation Of Human Branched-Chain Alpha		6e-18
2bp7_A	410	New Crystal Form Of The Pseudomonas Putida Branched		3e-16
1qs0_A	407	Crystal Structure Of Pseudomonas Putida 2-Oxoisoval		2e-15
3ooy_A	616	Crystal Structure Of Human Transketolase (Tkt) Leng		5e-04
3mos_A	616	The Structure Of Human Transketolase Length = 616		5e-04

>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  185 bits (470), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/254 (40%), Positives = 148/254 (58%), Gaps = 11/254 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADP 336
            +TYR+ GHS++DP
Sbjct: 276 LQTYRYHGHSMSDP 289

>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 11/254 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G +  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADP 336
            +TYR+ GHS++DP
Sbjct: 276 LQTYRYHGHSMSDP 289

>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant Length = 365

Iteration: 1
 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 102/254 (40%), Positives = 147/254 (57%), Gaps = 11/254 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 30  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 89
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 90  ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 147
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 148 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 200
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 201 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 258
Query: 323 CETYRFRGHSLADP 336
            +TYR+ GH ++DP
Sbjct: 259 LQTYRYHGHEMSDP 272

>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex With The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot Be Modeled Into The Electron Density Length = 382

Iteration: 1
 Score =  184 bits (466), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 102/254 (40%), Positives = 148/254 (58%), Gaps = 11/254 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ +R H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAFRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTSVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADP 336
            +TYR+ GHS++DP
Sbjct: 276 LQTYRYHGHSMSDP 289

>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 382

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/254 (39%), Positives = 147/254 (57%), Gaps = 11/254 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 47  VLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 106
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P
Sbjct: 107 ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVP 164
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN
Sbjct: 165 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN 217
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            + +G +  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E
Sbjct: 218 RYGMGTAVERAAASTDYYKRGDF--IPGLRVDGMDILCVREATRFAAAYCRSGKGPILME 275
Query: 323 CETYRFRGHSLADP 336
            +TYR+ GH ++DP
Sbjct: 276 LQTYRYHGHXMSDP 289

>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase Length = 365

Iteration: 1
 Score =  171 bits (433), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 98/254 (38%), Positives = 140/254 (55%), Gaps = 11/254 (4%)
Query: 83  LITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSV 142
           ++T+++GL+ Y      R  E    Q+Y +  + GF HL +GQEA   G    +   D +
Sbjct: 30  VLTREDGLKYYRXXQTVRRXELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHL 89
Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
           ++ YR H    ++G+  R +++EL G+  GC +G+GGS H ++K  N  GG   +G  +P
Sbjct: 90  ITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHXYAK--NFYGGNGIVGAQVP 147
Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
           +  G A   KY  +       D V L  +GDG  N GQ FE  N AALWKLP +F+ ENN
Sbjct: 148 LGAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENN 200
Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            +  G S  RA +    YK+G    +PG  VDG D+L VRE  + A    R G+GP L E
Sbjct: 201 RYGXGTSVERAAASTDYYKRGDF--IPGLRVDGXDILCVREATRFAAAYCRSGKGPILXE 258
Query: 323 CETYRFRGHSLADP 336
            +TYR+ GHS +DP
Sbjct: 259 LQTYRYHGHSXSDP 272

>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 367

Iteration: 1
 Score =  154 bits (388), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/258 (35%), Positives = 127/258 (49%), Gaps = 9/258 (3%)
Query: 92  LYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVSTYRDHV 150
           LY DM+  R  ++    +   GK   F+    G EA        ++   D V   YRDH 
Sbjct: 41  LYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPYYRDHG 99
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
            AL+ G+P + ++ ++        +G+    H  SK  N     + I   +P A GAA +
Sbjct: 100 LALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAIS 159
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K  R          V +  FGDG  + G ++  +N AA+   P VF+ ENN +AI + +
Sbjct: 160 MKLLR-------TGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDY 212
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
              T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE   YR+  
Sbjct: 213 RHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVELRVYRYGP 272
Query: 331 HSLADPDELRDPGEHLVL 348
           HS AD D    P E +  
Sbjct: 273 HSSADDDSRYRPKEEVAF 290

>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 116/250 (46%), Gaps = 17/250 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 48  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 106
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 107 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 157
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN +AI    
Sbjct: 158 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 331 HSLADPDELR 340
           H+++  D  R
Sbjct: 271 HTMSGDDPTR 280

>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score =  108 bits (269), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 116/250 (46%), Gaps = 17/250 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 49  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 107
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 108 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 158
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN +AI    
Sbjct: 159 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPV 211
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 331 HSLADPDELR 340
           H+++  D  R
Sbjct: 272 HTMSGDDPTR 281

>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n, E183q) Bound To The Peripheral Subunit Binding Domain Of E2 Length = 368

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 116/250 (46%), Gaps = 17/250 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 48  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 106
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 107 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 157
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F++ +N A  +K P +FVV+NN +AI    
Sbjct: 158 LKMRGK-------KAVAITYTGDGGTSQGNFYQGINFAGAFKAPAIFVVQNNRFAISTPV 210
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 211 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 270
Query: 331 HSLADPDELR 340
           H+++  D  R
Sbjct: 271 HTMSGDDPTR 280

>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 369

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 115/250 (46%), Gaps = 17/250 (6%)
Query: 91  ELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHV 150
           EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++  YRD  
Sbjct: 49  ELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFILPGYRDVP 107
Query: 151 HALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFT 210
             +  G+P    + + F  + G   G     +   +  N+L     IG     A G A  
Sbjct: 108 QIIWHGLP----LYQAFLFSRGHFHG-----NQIPEGVNVLPPQIIIGAQYIQAAGVALG 158
Query: 211 SKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSH 270
            K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN +A     
Sbjct: 159 LKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAASTPV 211
Query: 271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG 330
            + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E   +R+  
Sbjct: 212 EKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIETLCFRYGP 271
Query: 331 HSLADPDELR 340
           H+++  D  R
Sbjct: 272 HTMSGDDPTR 281

>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 400

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   HS +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 400

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 127/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   HS +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHSTSDDSSAYRPVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 94.7 bits (234), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 8/252 (3%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLAD 335
            TYR   HS +D
Sbjct: 284 MTYRIGHHSTSD 295

>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 127/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   H+ +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHNTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   H  +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHQTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   H  +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHDTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-Chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   H  +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHETSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial Branched-chain Alpha- Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   H  +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHXTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GAAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR   HS +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHHSTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 91.7 bits (226), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GAYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR    S +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR    S +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-Chain Alpha-Ketoacid Dehydrogenase Length = 400

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR    S +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 126/286 (44%), Gaps = 19/286 (6%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGH--SLADPDELR--------DPGEHLVLVLFIFCHSRSW 359
            TYR  GH  + AD    R        D  +H +  L  +  S+ W
Sbjct: 284 MTYRI-GHASTSADSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             +R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQFREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR    S +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation Loop Conformation In The Bckd Machine Length = 400

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YR+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TY     S +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYAIGHASTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha- Ketoacid Dehydrogenase By An Internal Molecular Switch Length = 400

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 125/285 (43%), Gaps = 17/285 (5%)
Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110
Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170
Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K        A+ + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAK-------RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223
Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283
Query: 324 ETYRFRGHSLADP-------DELR--DPGEHLVLVLFIFCHSRSW 359
            TYR    S +D        DE+   D  +H +  L  +  S+ W
Sbjct: 284 MTYRIGHASTSDDSSAFRSVDEVNYWDKQDHPISRLRHYLLSQGW 328

>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 410

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 96/231 (41%), Gaps = 9/231 (3%)
Query: 112 RGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 171
           R K   F     G+EA+ +G    L + D    TYR     +++ V    ++ +L     
Sbjct: 99  RQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNER 158
Query: 172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231
              +G+   +    +E         +      A G A  S  + +         +  A+ 
Sbjct: 159 DPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDT-------KIASAWI 211
Query: 232 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPG 290
           GDG      F   L  A +++ P++  V NN WAI      A  +   +  +G   G+  
Sbjct: 212 GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIAS 271
Query: 291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELR 340
             VDG D + V   ++ A ERARRG GP+L+E  TYR   HS + DP + R
Sbjct: 272 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR 322

>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 407

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 94/231 (40%), Gaps = 9/231 (3%)
Query: 112 RGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKAT 171
           R K   F     G+EA+ +G    L + D    TYR      ++ V     + +L     
Sbjct: 98  RQKKXSFYXQSLGEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSNER 157
Query: 172 GCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFF 231
              +G+   +    +E         +      A G A  S  + +         +  A+ 
Sbjct: 158 DPLKGRQLPIXYSVREAGFFTISGNLATQFVQAVGWAXASAIKGDT-------KIASAWI 210
Query: 232 GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK-KGPAFGMPG 290
           GDG      F   L  A +++ P++  V NN WAI      A  +   +  +G   G+  
Sbjct: 211 GDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIAS 270
Query: 291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELR 340
             VDG D + V   ++ A ERARRG GP+L+E  TYR   HS + DP + R
Sbjct: 271 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYR 321

>pdb|3OOY|A Chain A, Crystal Structure Of Human Transketolase (Tkt) Length = 616

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 256
           +G+G+  A G A+T KY  +      C        GDG  + G  +E +  A+++KL   
Sbjct: 121 LGQGLGAACGMAYTGKYFDKASYRVYC------LLGDGELSEGSVWEAMAFASIYKL--- 171
Query: 257 FVVENNLWAIGMSHLRATSDP-------QIY-KKGPAFGMPGFHVDGMDVLKVREVAKEA 308
               +NL AI   +    SDP        IY K+  AFG     VDG  V ++ +   +A
Sbjct: 172 ----DNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 227
Query: 309 IERARRGEGPTLVECETYRFRG 330
             +      PT +  +T++ RG
Sbjct: 228 KHQ------PTAIIAKTFKGRG 243

>pdb|3MOS|A Chain A, The Structure Of Human Transketolase Length = 616

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 27/142 (19%)
Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIV 256
           +G+G+  A G A+T KY  +      C        GDG  + G  +E +  A+++KL   
Sbjct: 123 LGQGLGAACGMAYTGKYFDKASYRVYC------LLGDGELSEGSVWEAMAFASIYKL--- 173
Query: 257 FVVENNLWAIGMSHLRATSDP-------QIY-KKGPAFGMPGFHVDGMDVLKVREVAKEA 308
               +NL AI   +    SDP        IY K+  AFG     VDG  V ++ +   +A
Sbjct: 174 ----DNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQA 229
Query: 309 IERARRGEGPTLVECETYRFRG 330
             +      PT +  +T++ RG
Sbjct: 230 KHQ------PTAIIAKTFKGRG 245

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	1e-146
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	1e-118
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	2e-90
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	1e-89
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	2e-89
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	2e-05
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	1e-04
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	3e-04
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	3e-04
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	6e-04
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	8e-04

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A* Length = 365

 Score =  418 bits (1076), Expect = e-146
 Identities = 104/262 (39%), Positives = 148/262 (56%), Gaps = 12/262 (4%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D ++
Sbjct: 31  LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 90

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           + YR H    ++G+  R +++EL G+  GC +G+GGSMHM++K  N  GG   +G  +P+
Sbjct: 91  TAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPL 148

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN 
Sbjct: 149 GAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR 201

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           + +G S  RA +    YK+G    +PG  VDGMD+L VRE  + A    R G+GP L+E 
Sbjct: 202 YGMGTSVERAAASTDYYKRG--DFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMEL 259

Query: 324 ETYRFRGHSLADPDEL-RDPGE 344
           +TYR+ GH ++DP    R   E
Sbjct: 260 QTYRYHGHEMSDPGVSYRTREE 281

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A* Length = 367

 Score =  346 bits (889), Expect = e-118
 Identities = 91/263 (34%), Positives = 128/263 (48%), Gaps = 10/263 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSV 142
           +  ++   LY DM+  R  ++    +   GK   F+    G EA        ++   D V
Sbjct: 33  LEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWV 91

Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
              YRDH  AL+ G+P + ++ ++        +G+    H  SK  N     + I   +P
Sbjct: 92  FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 151

Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
            A GAA + K  R          V +  FGDG  + G ++  +N AA+   P VF+ ENN
Sbjct: 152 PAAGAAISMKLLRT-------GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENN 204

Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            +AI + +   T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE
Sbjct: 205 FYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVE 264

Query: 323 CETYRFRGHSLAD-PDELRDPGE 344
              YR+  HS AD     R   E
Sbjct: 265 LRVYRYGPHSSADDDSRYRPKEE 287

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ... Length = 400

 Score =  275 bits (706), Expect = 2e-90
 Identities = 69/262 (26%), Positives = 113/262 (43%), Gaps = 9/262 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 52  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 110

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 111 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 170

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K           + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 171 AVGAAYAAKRANA-------NRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 223

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 224 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 283

Query: 324 ETYRFRGHSLA-DPDELRDPGE 344
            TYR    S + D    R   E
Sbjct: 284 MTYRIGHASTSDDSSAFRSVDE 305

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A* Length = 368

 Score =  272 bits (699), Expect = 1e-89
 Identities = 79/263 (30%), Positives = 117/263 (44%), Gaps = 19/263 (7%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           ++ ++  EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++
Sbjct: 41  LSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFIL 99

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YRD    +  G+P         G         G  +    +  N+L     IG     
Sbjct: 100 PGYRDVPQIIWHGLPLYQAFLFSRG------HFHGNQI---PEGVNVLPPQIIIGAQYIQ 150

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A   K R +         V + + GDG  + G F+E +N A  +K P +FVV+NN 
Sbjct: 151 AAGVALGLKMRGK-------KAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 203

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI     + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E 
Sbjct: 204 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIET 263

Query: 324 ETYRFRGHSLA--DPDELRDPGE 344
             +R+  H+++  DP   R    
Sbjct: 264 LCFRYGPHTMSGDDPTRYRSKEL 286

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A Length = 407

 Score =  273 bits (700), Expect = 2e-89
 Identities = 66/263 (25%), Positives = 104/263 (39%), Gaps = 10/263 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           I  Q   +    M+  R F+        + KM  F     G+EA+ +G    L + D   
Sbjct: 71  IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCF 129

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
            TYR     +++ V    ++ +L        +G+   +    +E         +      
Sbjct: 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQ 189

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A  S  + +         +  A+ GDG      F   L  A +++ P++  V NN 
Sbjct: 190 AVGWAMASAIKGD-------TKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQ 242

Query: 264 WAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
           WAI      A         +G   G+    VDG D + V   ++ A ERARRG GP+L+E
Sbjct: 243 WAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIE 302

Query: 323 CETYRFRGHSLAD-PDELRDPGE 344
             TYR   HS +D P + R   +
Sbjct: 303 WVTYRAGPHSTSDDPSKYRPADD 325

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Length = 616

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 19/132 (14%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP--I 255
           G+G+  A G A+T KY  +        +      GDG  + G  +E +  A+++KL   +
Sbjct: 124 GQGLGAACGMAYTGKYFDKA------SYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLV 177

Query: 256 VFVVENNLWAIGMS-HLRATSDPQIYKK-GPAFGMPGFHVDGMDVLKVREVAKEAIERAR 313
             +  N    +G S          IY+K   AFG     VDG  V    E   +A  +A+
Sbjct: 178 AILDINR---LGQSDPAPLQHQMDIYQKRCEAFGWHAIIVDGHSV----EELCKAFGQAK 230

Query: 314 RGEGPTLVECET 325
               PT +  +T
Sbjct: 231 --HQPTAIIAKT 240

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Length = 528

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 30/161 (18%), Positives = 46/161 (28%), Gaps = 56/161 (34%)

Query: 198 GEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM-------AAL 250
           G  +P A G              A+ +   +A  GDG           N        AA 
Sbjct: 404 GFALPAAIGVQL-----------AEPERQVIAVIGDG---------SANYSISALWTAAQ 443

Query: 251 WKLPIVFVVENNLWAIGM-------------SHLRATSDPQIYKKGPAFGMPGFHVDGMD 297
           + +P +FV+ NN    G                L              +G+     D   
Sbjct: 444 YNIPTIFVIMNNGT-YGALRWFAGVLEAENVPGLD-VPGIDFRALAKGYGVQALKADN-- 499

Query: 298 VLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDE 338
                E  K +++ A   +GP L+E  T          P +
Sbjct: 500 ----LEQLKGSLQEALSAKGPVLIEVST--------VSPVK 528

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Length = 578

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 38/148 (25%)

Query: 193 GFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALW- 251
           G   I   +  A GA+   +                   GD +     F+   +M  L  
Sbjct: 434 GANGIDGVVSSALGASVVFQP-------------MFLLIGDLS-----FY--HDMNGLLM 473

Query: 252 ----KLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMP----------GFHVDGMD 297
               K+ +  V+ NN      S L   ++P+ ++    FG             +  D  +
Sbjct: 474 AKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFES--LFGTSTELDFRFAAAFYDADYHE 531

Query: 298 VLKVREVAKEAIERARRGEGPTLVECET 325
              V E+ +EAI++A   +G  ++E +T
Sbjct: 532 AKSVDEL-EEAIDKASYHKGLDIIEVKT 558

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Length = 549

 Score = 41.3 bits (98), Expect = 3e-04
 Identities = 35/166 (21%), Positives = 52/166 (31%), Gaps = 54/166 (32%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM---- 247
                +   +P A GA              + +   +A  GDG           +M    
Sbjct: 403 FNHGSMANAMPQALGAQA-----------TEPERQVVAMCGDG---------GFSMLMGD 442

Query: 248 ---AALWKLPIVFVVENNLWAIGM-----------SHLRATSDPQIYKKGPAFGMPGFHV 293
                  KLP+  VV NN   +G            +      D    +   A G+ G  V
Sbjct: 443 FLSVVQMKLPVKIVVFNNSV-LGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRV 501

Query: 294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDEL 339
           +     K  EV  EA++RA   +GP LV+              +EL
Sbjct: 502 E-----KASEV-DEALQRAFSIDGPVLVDVVV---------AKEEL 532

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Length = 566

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 35/172 (20%), Positives = 54/172 (31%), Gaps = 47/172 (27%)

Query: 192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM---- 247
             +  IG  +P A G A  S+ R+            +   GDG            +    
Sbjct: 406 MQWGHIGWSVPSAFGNAMGSQDRQ-----------HVVMVGDG---------SFQLTAQE 445

Query: 248 ---AALWKL-PIVFVVENNLWAIGMSHLRA--------TSDPQIYKKGPAFGMPGFHVDG 295
                 ++L  I+F++ N     G     A          +         F     H  G
Sbjct: 446 VAQMVRYELPVIIFLINNR----GYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLG 501

Query: 296 MDVLKVREVAKEAIERAR-RGEGPTLVECETYRFRGHSLADPDELRDPGEHL 346
           +     +E+  EAI RA+    GPTL+EC+            D L   G  +
Sbjct: 502 LKATTPKEL-TEAIARAKANTRGPTLIECQI-----DRTDCTDMLVQWGRKV 547

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 Length = 552

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 20/141 (14%), Positives = 36/141 (25%), Gaps = 36/141 (25%)

Query: 197 IGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNM-------AA 249
           IG  +  A GA      RR            +   GDG            +         
Sbjct: 410 IGYTLAAAFGAQTACPNRR-----------VIVLTGDG---------AAQLTIQELGSML 449

Query: 250 LWKLPIVFVVENN-------LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR 302
             K   + +V NN                   +         A  +     +   V +  
Sbjct: 450 RDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDP-QSECWRVSEAE 508

Query: 303 EVAKEAIERARRGEGPTLVEC 323
           ++  + +E+    E  +L+E 
Sbjct: 509 QL-ADVLEKVAHHERLSLIEV 528

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
1qs0_A	407	2-oxoisovalerate dehydrogenase alpha-subunit; hete	100.0
2bfd_A	400	2-oxoisovalerate dehydrogenase alpha subunit; oxid	100.0
2ozl_A	365	PDHE1-A type I, pyruvate dehydrogenase E1 componen	100.0
1w85_A	368	Pyruvate dehydrogenase E1 component, alpha subunit	100.0
1umd_A	367	E1-alpha, 2-OXO acid dehydrogenase alpha subunit;	100.0
2yic_A	868	2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9	100.0
2xt6_A	1113	2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET	100.0
2jgd_A	933	2-oxoglutarate dehydrogenase E1 component; flavopr	100.0
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	99.96
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	99.94
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	99.92
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	99.91
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	99.9
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	99.89
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	99.89
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	99.88
3l84_A	632	Transketolase; TKT, structural genomics, center fo	99.88
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	99.88
3rim_A	700	Transketolase, TK; TPP, transferase; HET: TPP; 2.4	99.87
3uk1_A	711	Transketolase; structural genomics, seattle struct	99.87
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	99.86
2qtc_A	886	Pyruvate dehydrogenase E1 component; thiamin dipho	99.86
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	99.84
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	99.83
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	99.82
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	99.82
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	99.82
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	99.81
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	99.81
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	99.81
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	99.81
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	99.8
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	99.8
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	99.79
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	99.79
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	99.78
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	99.78
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	99.78
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	99.78
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	99.77
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	99.77
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.75
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	99.74
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	99.71
2c42_A	1231	Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron,	99.44
3ahc_A	845	Phosphoketolase, xylulose 5-phosphate/fructose 6-p	99.29
2pgn_A	589	Cyclohexane-1,2-dione hydrolase (CDH); three alpha	94.51
3eya_A	549	Pyruvate dehydrogenase [cytochrome]; pyruvate oxid	94.36
2uz1_A	563	Benzaldehyde lyase; thiamine diphosphate, thiamine	94.31
4feg_A	603	Pyruvate oxidase; carbanion, structure activity re	94.26
1ybh_A	590	Acetolactate synthase, chloroplast; acetohydroxyac	94.13
1ozh_A	566	ALS, acetolactate synthase, catabolic; acetohydrox	93.98
2vbi_A	566	Pyruvate decarboxylase; thiamine pyrophosphate, ly	93.85
2iht_A	573	Carboxyethylarginine synthase; thiamin diphosphate	93.76
1t9b_A	677	Acetolactate synthase, mitochondrial; acetohydroxy	93.69
2wvg_A	568	PDC, pyruvate decarboxylase; thiamine diphosphate,	93.54
2nxw_A	565	Phenyl-3-pyruvate decarboxylase; thiamine pyrophos	93.49
2x7j_A	604	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -	93.31
1q6z_A	528	BFD, BFDC, benzoylformate decarboxylase; lyase, ca	92.57
3lq1_A	578	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	92.34
1yd7_A	395	2-keto acid:ferredoxin oxidoreductase subunit alph	92.31
1v5e_A	590	Pyruvate oxidase; oxidoreductase, flavoprotein; HE	92.12
2q28_A	564	Oxalyl-COA decarboxylase; lyase, oxalate degradati	91.99
2c31_A	568	Oxalyl-COA decarboxylase; oxalate, thiamin diphosp	91.96
2pan_A	616	Glyoxylate carboligase; thiamin-diphosphate (THDP)	91.84
2vbf_A	570	Branched-chain alpha-ketoacid decarboxylase; KDCA,	90.09
2vk8_A	563	Pyruvate decarboxylase isozyme 1; asymmetric activ	89.56
1ovm_A	552	Indole-3-pyruvate decarboxylase; thiamine diphosph	89.49
2r8o_A	669	Transketolase 1, TK 1; reaction intermediate, calc	88.84
3mos_A	616	Transketolase, TK; thiamin diphosphate TPP THDP en	88.82
2o1s_A	621	1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia	88.04
2e6k_A	651	Transketolase; structural genomics, NPPSFA, nation	87.42
3hww_A	556	2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-	87.3
3kom_A	663	Transketolase; rossmann fold, csgid, transferase,	87.17
1gpu_A	680	Transketolase; transferase(ketone residues); HET:	85.85
3l84_A	632	Transketolase; TKT, structural genomics, center fo	85.14
2o1x_A	629	1-deoxy-D-xylulose-5-phosphate synthase; thiamin,	84.14
1itz_A	675	Transketolase; calvin cycle, cofactor, thiamine py	83.22
1r9j_A	673	Transketolase; domains, EACH of the alpha/beta typ	83.06
3m49_A	690	Transketolase; alpha-beta-alpha sandwich, csgid, t	82.82
2ozl_B	341	PDHE1-B, pyruvate dehydrogenase E1 component subun	81.23

>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A

Probab=100.00  E-value=3.6e-58  Score=459.60  Aligned_cols=284  Identities=24%  Similarity=0.332  Sum_probs=264.5

Q ss_pred             ccccchhHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCC
Q 018048           60 RRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE  139 (361)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~  139 (361)
                      ...++.+++.+|+++...+...+.+++++++++|+.|+++|.||+++.++|+||++ +|+|++.||||+++|++.+|+++
T Consensus        47 ~~~~~~~~~~ld~~g~~~~~~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~-~~~~~~~GqEA~~vg~~~al~~~  125 (407)
T 1qs0_A           47 ADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRT  125 (407)
T ss_dssp             HHHHTSCBCCBCTTSCBCSGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHSCTT
T ss_pred             hccCCCeEEEECCCCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-ccCcCCCChHHHHHHHHHhcCCC
Confidence            34567788889999877766668899999999999999999999999999999998 58999999999999999999999


Q ss_pred             cEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048          140 DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLK  219 (361)
Q Consensus       140 D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~  219 (361)
                      |+|+++||+|++.|++|+++.++|.+++++..+.+.|.++++|+.....++.+++|+||+++|+|+|+|+|.+++     
T Consensus       126 D~v~~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~-----  200 (407)
T 1qs0_A          126 DMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIK-----  200 (407)
T ss_dssp             SEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHT-----
T ss_pred             CEEEecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHh-----
Confidence            999999999999999999999999999999988888989999998877888899999999999999999998887     


Q ss_pred             hcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc-CCcchhhccccCCccEEEEeCCCH
Q 018048          220 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHVDGMDV  298 (361)
Q Consensus       220 ~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~-~~~d~~~~A~a~Gi~~~~Vdg~D~  298 (361)
                        +++++|||++|||++++|.|+|+|++|++|+||+||||+||+|+++++...+. ..++++++|++||+++++|||+|+
T Consensus       201 --~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~VdG~D~  278 (407)
T 1qs0_A          201 --GDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDF  278 (407)
T ss_dssp             --TCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEETTCH
T ss_pred             --CCCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEEcCCCH
Confidence              57899999999999999999999999999999999999999999988766655 578999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CCCCCCHHHHHhHHHh
Q 018048          299 LKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PDELRDPGEHLVLVLF  351 (361)
Q Consensus       299 ~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~~yR~~~e~~~~~~~  351 (361)
                      ++|++++++|+++++++++|+|||++|||..||+++| |+.||+++|++.|..-
T Consensus       279 ~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~~  332 (407)
T 1qs0_A          279 VAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLG  332 (407)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhcC
Confidence            9999999999999999999999999999999999997 8899999999999753

>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...

Probab=100.00  E-value=5.8e-58  Score=457.56  Aligned_cols=305  Identities=24%  Similarity=0.355  Sum_probs=261.3

Q ss_pred             CCcccCccceeecccccCCCCCCcccccchhHHHHHHhhhccc-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCe
Q 018048           36 GTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKS-ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGK  114 (361)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk  114 (361)
                      ..+|+|...+|. +++.+.++  -....+.+++.+|+++.... ...+.+++++++++|+.|+++|.||+++.+++++||
T Consensus         6 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gr   82 (400)
T 2bfd_A            6 KPQFPGASAEFI-DKLEFIQP--NVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGR   82 (400)
T ss_dssp             CCCCTTCCCCCC-SSCCCCCC--CCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCcccc-cceeeccC--cccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            568888877776 77777765  33456789999999997653 345789999999999999999999999999999999


Q ss_pred             eceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCc
Q 018048          115 MFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGF  194 (361)
Q Consensus       115 ~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~  194 (361)
                      + +|+|++.||||+++|++.+|+++|+|+++||+|+..+.+|.++.++|.+++++..+.+.|.++++|+.....++.+++
T Consensus        83 i-~~~~~~~GqEa~~vg~~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~  161 (400)
T 2bfd_A           83 I-SFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTIS  161 (400)
T ss_dssp             S-SCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCC
T ss_pred             c-ceeecCCChHHHHHHHHHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccC
Confidence            8 489999999999999999999999999999999999999999999999999998888888888999987777788888


Q ss_pred             cccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc
Q 018048          195 AFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT  274 (361)
Q Consensus       195 g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~  274 (361)
                      |+||+++|+|+|+|+|.+++       +++++|||++|||+++||.|+|+|++|++|+||+||||.||+|+++++...+.
T Consensus       162 g~lG~~lp~AvG~AlA~~~~-------~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~  234 (400)
T 2bfd_A          162 SPLATQIPQAVGAAYAAKRA-------NANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQY  234 (400)
T ss_dssp             SSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTC
T ss_pred             ccccccccHHHHHHHhhhhh-------CCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccC
Confidence            99999999999999998877       46899999999999999999999999999999999999999999998877777


Q ss_pred             CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CCCCCCHHHHHhHHHh
Q 018048          275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PDELRDPGEHLVLVLF  351 (361)
Q Consensus       275 ~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~~yR~~~e~~~~~~~  351 (361)
                      ..++++++|++||+++++|||+|+++|++++++|++++|++++|+|||++|||..||+++| |+.||+++|++.|..-
T Consensus       235 ~~~d~~~~a~a~G~~~~~VdG~D~~av~~a~~~A~~~ar~~~~P~lIe~~tyR~~gHs~~D~~~~Yr~~~e~~~~~~~  312 (400)
T 2bfd_A          235 RGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQ  312 (400)
T ss_dssp             SSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------
T ss_pred             CCCCHHHHHHHcCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeeeeCCCCCCCCCccCCCHHHHHHHHhc
Confidence            7789999999999999999999999999999999999999999999999999999999998 5789999999999864

>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*

Probab=100.00  E-value=1.2e-57  Score=450.23  Aligned_cols=260  Identities=39%  Similarity=0.734  Sum_probs=243.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCH
Q 018048           80 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPA  159 (361)
Q Consensus        80 ~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~  159 (361)
                      ..+.+++++++++|+.|+++|.||+++..+++||++.||+|++.||||+++|++.+|++.|+|+++||+|++.+++|+++
T Consensus        27 ~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~  106 (365)
T 2ozl_A           27 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV  106 (365)
T ss_dssp             SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCH
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCc
Q 018048          160 RAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNG  239 (361)
Q Consensus       160 ~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g  239 (361)
                      .++|.+++++.++.+.|.+|++|+.+  .++.+++|+||+++|+|+|+|+|.+++       +++++|||++|||++++|
T Consensus       107 ~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~-------~~~~~vv~~~GDGa~~~G  177 (365)
T 2ozl_A          107 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYN-------GKDEVCLTLYGDGAANQG  177 (365)
T ss_dssp             HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGCH
T ss_pred             HHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhc-------CCCceEEEEECchhhhcc
Confidence            99999999999998888899999864  367888899999999999999998887       578999999999999999


Q ss_pred             chHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCE
Q 018048          240 QFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPT  319 (361)
Q Consensus       240 ~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~  319 (361)
                      .++|+||+|+.|++|+||||+||+|+++++...+...+++++  ++||+++++|||+|+++|++++++|++++++++||+
T Consensus       178 ~~~Ealn~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~--ra~g~p~~~VdG~D~~av~~a~~~A~~~~r~~~gP~  255 (365)
T 2ozl_A          178 QIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPI  255 (365)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGG--TTTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             HHHHHHHHHHHHCcCEEEEEECCCcccCCCcccccCCCCHHH--HhCCCCEEEEeCCCHHHHHHHHHHHHHHHHhCCCCE
Confidence            999999999999999999999999999887666666778887  589999999999999999999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCCC-CCCCHHHHHhHHH
Q 018048          320 LVECETYRFRGHSLADPD-ELRDPGEHLVLVL  350 (361)
Q Consensus       320 lIev~t~R~~gHs~~Dp~-~yR~~~e~~~~~~  350 (361)
                      |||++|||.+||+++||. .||+++|++.|..
T Consensus       256 lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~  287 (365)
T 2ozl_A          256 LMELQTYRYHGHEMSDPGVSYRTREEIQEVRS  287 (365)
T ss_dssp             EEEEECCCSSCSSTTCCSCSSSCHHHHHHHHH
T ss_pred             EEEEEeecCCCCCCCCCCcccCCHHHHHHHHh
Confidence            999999999999999964 7999999999975

>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*

Probab=100.00  E-value=9.3e-56  Score=437.28  Aligned_cols=272  Identities=30%  Similarity=0.419  Sum_probs=245.0

Q ss_pred             cchhHHHHHHhhhccc-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcE
Q 018048           63 PVVAVSEVVKEKKVKS-ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDS  141 (361)
Q Consensus        63 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~  141 (361)
                      .+.+++.+|+++.... ...+.+++++++++|+.|+++|.||+++.+++++|++ ||+|++.||||+++|++.+|+++|+
T Consensus        19 ~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~-g~~~~~~G~Ea~~vg~~~~l~~~D~   97 (368)
T 1w85_A           19 QFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDF   97 (368)
T ss_dssp             TCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred             CCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ccCCCCCCHHHHHHHHHHhcCCcCE
Confidence            3456778888886553 3456799999999999999999999999999999998 9999999999999999999999999


Q ss_pred             EEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048          142 VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA  221 (361)
Q Consensus       142 v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~  221 (361)
                      ++++||+|++.+++|.++..+|.+++++.+      +|++|   ...++.+++|+||+++|+|+|+|+|.+++       
T Consensus        98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~------G~~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~-------  161 (368)
T 1w85_A           98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH------GNQIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMR-------  161 (368)
T ss_dssp             EECCSSCHHHHHHTTCCHHHHHHHHHTCGG------GGCCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHT-------
T ss_pred             EEecchhHHHHHhcCCCHHHHHHHHCCCCC------CCCCC---cccccCCCccccCccccHHHHHHHHhHhh-------
Confidence            999999999999999999999999999865      35555   34567888999999999999999998877       


Q ss_pred             CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      +++++|||++|||++++|.++|+|++|++++||+||||+||+|+++++...+...+++.++|++||+++++|||+|+++|
T Consensus       162 ~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~VdG~D~~av  241 (368)
T 1w85_A          162 GKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAV  241 (368)
T ss_dssp             TCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHH
T ss_pred             CCCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEEcCCCHHHH
Confidence            57899999999999999999999999999999999999999999988777777778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEEEEecCCCCC-CCC-CCCCCCHHHHHhHHHh
Q 018048          302 REVAKEAIERARRGEGPTLVECETYRFRGHS-LAD-PDELRDPGEHLVLVLF  351 (361)
Q Consensus       302 ~~al~~Al~~ar~~~gP~lIev~t~R~~gHs-~~D-p~~yR~~~e~~~~~~~  351 (361)
                      ++++++|+++++++++|+|||++|||.+||+ ++| |+.||+++|++.|..-
T Consensus       242 ~~a~~~A~~~~r~~~gP~lIe~~t~r~~gHs~~~Ddp~~yr~~~e~~~~~~~  293 (368)
T 1w85_A          242 YAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKK  293 (368)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEeeccCCCCCCCCCccccCCHHHHHHHhcC
Confidence            9999999999999999999999999999999 987 8999999999999863

>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*

Probab=100.00  E-value=8e-52  Score=409.19  Aligned_cols=284  Identities=32%  Similarity=0.477  Sum_probs=260.5

Q ss_pred             cccchhHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCC-
Q 018048           61 RLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-  139 (361)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~-  139 (361)
                      ...+..++.+|+++.........+++++++++|+.|+++|.||.++..++++|++ |+++++.|+|+++++++.+++++ 
T Consensus        10 ~~~~~~~~~l~~~g~~~~~~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~-g~~~~~~G~ea~~~~~~~~l~~~r   88 (367)
T 1umd_A           10 TFTEEPIRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGF   88 (367)
T ss_dssp             SSCSSCBCCBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTT
T ss_pred             CCCCCeEEEECCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-cCCCCCcCHHHHHHHHHHHcCCCC
Confidence            3455678888888875544456789999999999999999999999999999999 89999999999999999999988 


Q ss_pred             cEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048          140 DSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLK  219 (361)
Q Consensus       140 D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~  219 (361)
                      |+++++||+|++.+.+|.++.++|.+++++.++++.|.++++|+..+..++.+.+|++|.++|.|+|+|+|.|+.     
T Consensus        89 D~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~-----  163 (367)
T 1umd_A           89 DWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLL-----  163 (367)
T ss_dssp             SEEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHT-----
T ss_pred             cEEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHh-----
Confidence            999999999999999999999999999999988877777888887777778888999999999999999998887     


Q ss_pred             hcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHH
Q 018048          220 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVL  299 (361)
Q Consensus       220 ~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~  299 (361)
                        +++++|||++|||++++|.++|+|++|+++++|+|+||.||+|+++++...+...+++.+++++||+++++|||+|++
T Consensus       164 --~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~Vdg~d~~  241 (367)
T 1umd_A          164 --RTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVL  241 (367)
T ss_dssp             --TCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHH
T ss_pred             --CCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEeCCCCHH
Confidence              578999999999999999999999999999999999999999999887666667789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC-CCCCCCHHHHHhHHHhh
Q 018048          300 KVREVAKEAIERARRGEGPTLVECETYRFRGHSLAD-PDELRDPGEHLVLVLFI  352 (361)
Q Consensus       300 ~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D-p~~yR~~~e~~~~~~~~  352 (361)
                      +|++++++|+++++++++|+|||++|+|..||+++| |+.||+++|++.|..-+
T Consensus       242 av~~a~~~A~~~a~~~~gP~lIe~~t~r~~Ghs~~D~~~~Yr~~~e~~~~~~~d  295 (367)
T 1umd_A          242 ASYYVVKEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKD  295 (367)
T ss_dssp             HHHHHHHHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcCCCEEEEEEeecCCCCCCCCCccccCCHHHHHHHHcCC
Confidence            999999999999999999999999999999999998 78999999999998643

>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*

Probab=100.00  E-value=1.1e-46  Score=405.55  Aligned_cols=277  Identities=21%  Similarity=0.236  Sum_probs=231.1

Q ss_pred             HHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCcE
Q 018048           68 SEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KEDS  141 (361)
Q Consensus        68 ~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D~  141 (361)
                      +.|.+++++.+.  +.+++++++++|+.|+++|.||+++.++|++||++|    ..|||+++++++.+++      ++|+
T Consensus       101 ~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~~g----~~G~Ea~~~g~~~~l~~~~~l~~~D~  174 (868)
T 2yic_A          101 QRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFS----LEGAETVIPMMDAVIDQCAEHGLDEV  174 (868)
T ss_dssp             HHHHHHHHSSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGC----CTTCTTHHHHHHHHHHHHHHTTCSEE
T ss_pred             hHHHHHHhccCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----CCChHHHHHHHHHHHHHhhhCCCCCE
Confidence            457777777644  789999999999999999999999999999999987    3899999999987754      7999


Q ss_pred             EEc-ccCCcchhhc--CCCCHHHHHHHHhcCcCCC-ccc-CCCcccccccc------------ccccCCccccccccHHH
Q 018048          142 VVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRG-QGGSMHMFSKE------------HNLLGGFAFIGEGIPVA  204 (361)
Q Consensus       142 v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~g~-~~g-d~G~~h~~~~~------------~~~~~~~g~mG~~lP~A  204 (361)
                      |++ +||+|++.|+  +|+++.++|.|++++.++. +.| .+..+|+....            .++.++.++||+++|+|
T Consensus       175 v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~P~A  254 (868)
T 2yic_A          175 VIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVL  254 (868)
T ss_dssp             EEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHH
T ss_pred             EEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHH
Confidence            998 7999999999  9999999999999998765 333 22245765432            23356789999999999


Q ss_pred             HHHHHHHHHHHhhhh---hcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCc
Q 018048          205 TGAAFTSKYRREVLK---EADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDP  277 (361)
Q Consensus       205 iGaA~A~k~~~~~~~---~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~  277 (361)
                      +|+|+|.|++++...   ....+.+|||++|||+| ++|.|+|+||+|+.|++|   +||||+||+|+++++...+...+
T Consensus       255 ~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~~~~~~s~~  334 (868)
T 2yic_A          255 EGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSE  334 (868)
T ss_dssp             HHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSS
T ss_pred             HHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccCcccccccc
Confidence            999999988752110   00156799999999997 799999999999999999   99999999999998765555667


Q ss_pred             chhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHH
Q 018048          278 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVL  350 (361)
Q Consensus       278 d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~  350 (361)
                      ++.++|++||+++++|||+|+++|++++++|+++++++++|+|||++|||.+||+++|+..||.++|.+.|..
T Consensus       335 ~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~ar~~~~PvlIe~~tyR~~GHs~~D~p~~~~p~~~~~~~~  407 (868)
T 2yic_A          335 YCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDT  407 (868)
T ss_dssp             STTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTT
T ss_pred             CHHHHHHhCCCcEEEEeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCcCcccccccCChHHHHHHHh
Confidence            7889999999999999999999999999999999999999999999999999999999777777777777764

>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}

Probab=100.00  E-value=1.4e-45  Score=405.57  Aligned_cols=277  Identities=21%  Similarity=0.236  Sum_probs=229.3

Q ss_pred             HHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhc------CCCcE
Q 018048           68 SEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL------KKEDS  141 (361)
Q Consensus        68 ~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l------~~~D~  141 (361)
                      +.|.+++++.+.  +.+++++++++|+.|+++|.||+++.++|++||++|+    .|||++++|++.++      +++|+
T Consensus       346 ~~w~~~~~e~~~--~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~~g~----~GqEa~~~g~~~~l~~~~~l~~~D~  419 (1113)
T 2xt6_A          346 QRWIQERVETKH--DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKRFSL----EGAETVIPMMDAVIDQCAEHGLDEV  419 (1113)
T ss_dssp             HHHHHHHHHSCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGGGCC----TTCTTHHHHHHHHHHHHHHTTCSEE
T ss_pred             hHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccC----CChHHHHHHHHHHHHHhhhCCCCCE
Confidence            457777777644  7899999999999999999999999999999999874    89999999998775      47999


Q ss_pred             EEc-ccCCcchhhc--CCCCHHHHHHHHhcCcCCC-ccc-CCCcccccccc------------ccccCCccccccccHHH
Q 018048          142 VVS-TYRDHVHALS--KGVPARAVMSELFGKATGC-CRG-QGGSMHMFSKE------------HNLLGGFAFIGEGIPVA  204 (361)
Q Consensus       142 v~~-~yR~~~~~l~--~g~~~~~~~~el~~~~~g~-~~g-d~G~~h~~~~~------------~~~~~~~g~mG~~lP~A  204 (361)
                      |++ +||+|++.|+  +|+++.++|.|++++.++. +.| .+..+|+....            .++.++.++||+++|+|
T Consensus       420 v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~Lg~~~p~A  499 (1113)
T 2xt6_A          420 VIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSHLEAVDPVL  499 (1113)
T ss_dssp             EEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSSTTTTHHHH
T ss_pred             EEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCccccccccHH
Confidence            998 7999999999  9999999999999998765 333 22245765422            23356789999999999


Q ss_pred             HHHHHHHHHHHhhhh---hcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCC---eEEEEEcCCcccccccccccCCc
Q 018048          205 TGAAFTSKYRREVLK---EADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGMSHLRATSDP  277 (361)
Q Consensus       205 iGaA~A~k~~~~~~~---~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~~~~~q~~~~  277 (361)
                      +|+|+|.|++++...   ....+.+++|++|||+| ++|.|+|+||+|+.++||   +||||+||+|+++++...+...+
T Consensus       500 ~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~~~~~~s~~  579 (1113)
T 2xt6_A          500 EGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTAPTDSRSSE  579 (1113)
T ss_dssp             HHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBCHHHHCSSS
T ss_pred             HHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccCcccccccc
Confidence            999999998752110   00156899999999996 899999999999999999   99999999999998755455556


Q ss_pred             chhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHH
Q 018048          278 QIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVL  350 (361)
Q Consensus       278 d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~  350 (361)
                      ++.+++++||+++++|||+|+++|++++++|+++++++++|+|||++|||.+||+++|+..||.++|.+.|..
T Consensus       580 ~~~~~a~a~G~p~~~VdG~D~~av~~a~~~A~~~~r~~~~PvlIe~~tyR~~GHs~~D~p~~~~~~~~~~~~~  652 (1113)
T 2xt6_A          580 YCTDVAKMIGAPIFHVNGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDPSMTQPYMYDVIDT  652 (1113)
T ss_dssp             STTGGGGGGTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCSCSSTTCCGGGTCHHHHHHHTT
T ss_pred             CHHHHHHhcCCcEEEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeEccCCcCCCCccccCChHHHHHHHh
Confidence            7889999999999999999999999999999999999999999999999999999999777777777777664

>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*

Probab=100.00  E-value=3.6e-45  Score=395.92  Aligned_cols=273  Identities=19%  Similarity=0.210  Sum_probs=212.4

Q ss_pred             HHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC------CCcEEE
Q 018048           70 VVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK------KEDSVV  143 (361)
Q Consensus        70 ~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~------~~D~v~  143 (361)
                      |.+++++..  .+.+++|+++++|+.|+++|.||+++.++|++||++|    +.|||++.+|++.+++      .+|+|+
T Consensus       183 w~~~~~e~~--~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gkrf~----~~G~Ea~i~g~~~~~~~a~~~g~~D~v~  256 (933)
T 2jgd_A          183 WIQQRIESG--RATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFS----LEGGDALIPMLKEMIRHAGNSGTREVVL  256 (933)
T ss_dssp             HHHHHHCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCC----CTTCTTHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             HHHHHhhcc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----CCCchHHHHHHHHHHHHHhhCCCCCEEe
Confidence            555555543  5689999999999999999999999999999999865    6899999999877775      589999


Q ss_pred             c-ccCCcchhhc--CCCCHHHHHHHHhcCcCCCcccCCCccccccccc----------cccCCccccccccHHHHHHHHH
Q 018048          144 S-TYRDHVHALS--KGVPARAVMSELFGKATGCCRGQGGSMHMFSKEH----------NLLGGFAFIGEGIPVATGAAFT  210 (361)
Q Consensus       144 ~-~yR~~~~~l~--~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~----------~~~~~~g~mG~~lP~AiGaA~A  210 (361)
                      + +||+|++.|+  +|.++.++|.|++++.++.+.+....+|+.....          ++....+++|.++|+|+|+|+|
T Consensus       257 g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~~~p~A~G~A~A  336 (933)
T 2jgd_A          257 GMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRA  336 (933)
T ss_dssp             ECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTCHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCcccccccCHHHHHHHH
Confidence            6 8999999999  9999999999999998776533344567664321          2246779999999999999999


Q ss_pred             HHHHHhhhhhcCCCceEEEEECCCcc-cCcchHHHHHHhhhCCCC---eEEEEEcCCccccc-ccccccCCcchhhcccc
Q 018048          211 SKYRREVLKEADCDHVTLAFFGDGTC-NNGQFFECLNMAALWKLP---IVFVVENNLWAIGM-SHLRATSDPQIYKKGPA  285 (361)
Q Consensus       211 ~k~~~~~~~~~~~~~~Vv~~~GDGs~-~~g~~~eeL~tA~~~~LP---vi~VV~NN~y~is~-~~~~q~~~~d~~~~A~a  285 (361)
                      .++++...  .+.+.+|||++|||++ ++|.++|+||+|+.+++|   +|+||+||+|++++ +...+...+++.+++++
T Consensus       337 ~~~~~~~~--~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~~~~~~~a~a  414 (933)
T 2jgd_A          337 RLDRLDEP--SSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKM  414 (933)
T ss_dssp             HHTTSSSC--CGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC---------------CGGGGGGT
T ss_pred             HHhhcccc--CCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccchhHHHHHHH
Confidence            88763110  0146799999999998 899999999999999999   99999999999998 77766777889999999


Q ss_pred             CCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCCCCHHHHHhHHH
Q 018048          286 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPGEHLVLVL  350 (361)
Q Consensus       286 ~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~yR~~~e~~~~~~  350 (361)
                      ||+|+++|||+|+++|+++++.|+++++++++|+|||+.|||..||+++|+..||+++|.+.|-.
T Consensus       415 ~g~p~~~VdG~D~~av~~a~~~A~e~~r~~~~P~lIe~~tyR~~GH~~~D~~~yr~~~e~~~~~~  479 (933)
T 2jgd_A          415 VQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKK  479 (933)
T ss_dssp             TTCCEEEEETTCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-----------CCTTHHHHHT
T ss_pred             cCCCEEEECCCCHHHHHHHHHHHHHHHHhcCCCEEEEEeeeeecCcCcccchhhCCHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999878999999999875

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=99.96  E-value=7.3e-29  Score=260.10  Aligned_cols=226  Identities=18%  Similarity=0.192  Sum_probs=162.8

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC-CCcEEE--cccCCcchhhcCCCC
Q 018048           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVV--STYRDHVHALSKGVP  158 (361)
Q Consensus        82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~-~~D~v~--~~yR~~~~~l~~g~~  158 (361)
                      ..++.+++.++++.|   |.+..   ++.  ++..|+++++.|+|++.+++...++ +.|+++  ..||++++.+..|. 
T Consensus        21 ~~l~~~~l~~l~~~i---R~~~~---~~~--~~~~Gh~~~~lg~~~~~~~l~~~~~~~~D~~v~~~gH~~y~~~~l~G~-   91 (621)
T 2o1s_A           21 RLLPKESLPKLCDEL---RRYLL---DSV--SRSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGR-   91 (621)
T ss_dssp             TTSCGGGHHHHHHHH---HHHHH---HHS--CGGGCTHHHHHTTHHHHHHHHHHSCTTTSEEEESSSTTCHHHHHTTTT-
T ss_pred             hhCCHHHHHHHHHHH---HHHHH---HHH--hhcCCCcCCChhHHHHHHHHHhccCCCCCEEEEeCchHHHHHHHHhCC-
Confidence            357788999999888   54443   222  2346999999999999999999999 889887  57999888888876 


Q ss_pred             HHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccC
Q 018048          159 ARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN  238 (361)
Q Consensus       159 ~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~  238 (361)
                      .++ +..+ ....    |..|.......++.+ .++|+||+++|+|+|+|+|.+++       +++++|||++|||++++
T Consensus        92 ~~~-~~~~-r~~~----g~~g~~~~~~s~~~~-~~~G~~G~gl~~A~G~AlA~~~~-------~~~~~Vv~v~GDG~~~~  157 (621)
T 2o1s_A           92 RDK-IGTI-RQKG----GLHPFPWRGESEYDV-LSVGHSSTSISAGIGIAVAAEKE-------GKNRRTVCVIGDGAITA  157 (621)
T ss_dssp             GGG-GGGT-TSTT----SCCSSCCTTTCTTCC-SCCSSSSCHHHHHHHHHHHHHHH-------TSCCCEEEEEETTGGGS
T ss_pred             Hhh-hhcc-cccC----CCCCCCCCCCCCCCc-cCCcccchHHHHHHHHHHHHHHh-------CCCCeEEEEEchhhhhc
Confidence            111 1111 1111    111211110112333 34899999999999999998887       57899999999999999


Q ss_pred             cchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCC----------------------------------cch-----
Q 018048          239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSD----------------------------------PQI-----  279 (361)
Q Consensus       239 g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~----------------------------------~d~-----  279 (361)
                      |+++|+|++|+++++|+|+||.||+|+++.+.+.+...                                  .++     
T Consensus       158 G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~  237 (621)
T 2o1s_A          158 GMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGVPPIKELLKRTEEHIKGMV  237 (621)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEEEECC-------------------------------------------------------
T ss_pred             cHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhccchHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999887654432100                                  122     


Q ss_pred             --hhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          280 --YKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       280 --~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                        .+++++||++++ +|||+|+.++.+++++    +++.++|+|||++|+|..||+..
T Consensus       238 ~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~----A~~~~gP~lI~v~t~kg~G~~~~  291 (621)
T 2o1s_A          238 VPGTLFEELGFNYIGPVDGHDVLGLITTLKN----MRDLKGPQFLHIMTKKGRGYEPA  291 (621)
T ss_dssp             -CHHHHHHTTCEEEEEEETTCHHHHHHHHHH----HHHSCSEEEEEEECCCTTCCCCC
T ss_pred             ChhhHHHHCCCeEeeeeCCCCHHHHHHHHHH----HHHcCCCEEEEEEEecccCCChh
Confidence              478899999999 9999999887665555    45568999999999999999854

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=99.94  E-value=2.7e-27  Score=248.59  Aligned_cols=222  Identities=18%  Similarity=0.171  Sum_probs=160.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcC-CCcEEEcccCCcc---hhhcCCC
Q 018048           82 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLK-KEDSVVSTYRDHV---HALSKGV  157 (361)
Q Consensus        82 ~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~-~~D~v~~~yR~~~---~~l~~g~  157 (361)
                      ..++.+++.++|+.|   |.+.   .++..  +..|+++++.|+-.+..++...++ +.|+++.. |+|.   +.+..|.
T Consensus        23 ~~l~~~~l~~l~~~i---R~~~---~~~~~--~~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l~G~   93 (629)
T 2o1x_A           23 KRLSREQLPALTEEL---RGEI---VRVCS--RGGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKILTGR   93 (629)
T ss_dssp             TTSCGGGHHHHHHHH---HHHH---HHHHT--TSSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHTTTT
T ss_pred             hhCCHHHHHHHHHHH---HHHH---HHHHH--hcCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHHhCc
Confidence            356788999999988   5433   23333  246999999999666666655568 78988877 8885   3444454


Q ss_pred             -CHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc
Q 018048          158 -PARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC  236 (361)
Q Consensus       158 -~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~  236 (361)
                       +....++++.+        ..|...... ......++|+||+++|+|+|+|+|.+++       +++++|||++|||++
T Consensus        94 ~~~~~~~r~~~g--------~~G~p~~~~-s~~~~~~~G~~G~gl~~AvG~AlA~k~~-------~~~~~Vv~v~GDG~~  157 (629)
T 2o1x_A           94 RDQMADIKKEGG--------ISGFTKVSE-SEHDAITVGHASTSLTNALGMALARDAQ-------GKDFHVAAVIGDGSL  157 (629)
T ss_dssp             GGGGGGTTSTTS--------CCSSCCGGG-CTTCCSCCSSSSCHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGG
T ss_pred             HhHHhCcccCCC--------CCCCCCCCC-CCCCCcCCCcccccHhHHHHHHHHHHHh-------CCCCeEEEEEchhhh
Confidence             11111222221        112111111 1123567899999999999999998887       579999999999999


Q ss_pred             cCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccC--------------------------C---------cch--
Q 018048          237 NNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS--------------------------D---------PQI--  279 (361)
Q Consensus       237 ~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~--------------------------~---------~d~--  279 (361)
                      ++|+++|+|++|+++++|+|+||+||+|+++.+...+..                          .         +++  
T Consensus       158 ~~G~~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~~g~~~~~~~~~~~d~~~  237 (629)
T 2o1x_A          158 TGGMALAALNTIGDMGRKMLIVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEAVSKPLADFMSRAKNSTR  237 (629)
T ss_dssp             GSHHHHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSHHHHC---------------------------------------
T ss_pred             hccHHHHHHHHHHhhCCCEEEEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988665431100                          0         142  


Q ss_pred             -----h--hccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCC
Q 018048          280 -----Y--KKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHS  332 (361)
Q Consensus       280 -----~--~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs  332 (361)
                           .  +++++||++++ +|||+|+.++.++    ++++++.++|+||++.|++..||+
T Consensus       238 ~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~a----l~~A~~~~~P~lI~v~t~kg~G~~  294 (629)
T 2o1x_A          238 HFFDPASVNPFAAMGVRYVGPVDGHNVQELVWL----LERLVDLDGPTILHIVTTKGKGLS  294 (629)
T ss_dssp             ------CCCTTGGGTCEEEEEEESSCHHHHHHH----HHHHTTSSSEEEEEEECCTTTTCH
T ss_pred             hhcCcccchHHHhcCCeEEeeECCcCHHHHHHH----HHHHHhcCCCEEEEEEEecCCCCC
Confidence                 3  89999999999 9999998877654    555566789999999999999986

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=99.92  E-value=2.8e-24  Score=227.42  Aligned_cols=163  Identities=20%  Similarity=0.202  Sum_probs=137.3

Q ss_pred             ccccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCC
Q 018048          188 HNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNL  263 (361)
Q Consensus       188 ~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~  263 (361)
                      .++...+|+||+++|+|+|+|+|.++++..+..++   .+++|||++|||++++|+++|+|++|++++|| +|+||.||+
T Consensus       109 ~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~  188 (680)
T 1gpu_A          109 PGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNK  188 (680)
T ss_dssp             TTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             CCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccchhhHHHHHHHHHHhCCCcEEEEEECCC
Confidence            34567789999999999999999887753332111   37899999999999999999999999999999 999999999


Q ss_pred             cccccccccccCCcchhhccccCCccEE-EEeCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCC----C
Q 018048          264 WAIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP----D  337 (361)
Q Consensus       264 y~is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~-D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp----~  337 (361)
                      |+++.+...+. .+|+.+++++||++++ +|||+ |+.++++++++|.+   ..++|+||+|+|+|..||+..|+    .
T Consensus       189 ~~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~  264 (680)
T 1gpu_A          189 ITIDGATSISF-DEDVAKRYEAYGWEVLYVENGNEDLAGIAKAIAQAKL---SKDKPTLIKMTTTIGYGSLHAGSHSVHG  264 (680)
T ss_dssp             EETTEEGGGTC-CCCHHHHHHHHTCEEEEESCTTTCHHHHHHHHHHHHH---CTTSCEEEEEECCTTTTSTTTTSGGGSS
T ss_pred             ceEeccccccc-CccHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHH---CCCCCEEEEEEeecccccccCCCCccCC
Confidence            99877655443 5789999999999999 99999 99988776666543   36899999999999999997775    6


Q ss_pred             CCCCHHHHHhHHHhhhc
Q 018048          338 ELRDPGEHLVLVLFIFC  354 (361)
Q Consensus       338 ~yR~~~e~~~~~~~~~~  354 (361)
                      .||+++|++.|......
T Consensus       265 ~~~~~ee~~~~~~~~~~  281 (680)
T 1gpu_A          265 APLKADDVKQLKSKFGF  281 (680)
T ss_dssp             SCCCHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHcCC
Confidence            79999999999876543

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=99.91  E-value=2.8e-24  Score=226.40  Aligned_cols=160  Identities=21%  Similarity=0.204  Sum_probs=135.4

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++..++|+||+++|+|+|+|+|.++++..+...+   ++++|+|++|||++++|+++|+|++|++++|| +|+||.||+|
T Consensus       112 g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~  191 (651)
T 2e6k_A          112 GVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGDLMEGVSGEAASLAGHWGLSKLIVFWDDNRI  191 (651)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECCE
T ss_pred             CeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhhhchhHHHHHHHHHHHcCCCeEEEEEECCCc
Confidence            4567789999999999999999887754332111   57899999999999999999999999999999 9999999999


Q ss_pred             ccccccccccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCCCC----
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDEL----  339 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~~y----  339 (361)
                      +++.+...+. .+|+.+++++||++++ +|||+|+.++++++++|.    +.++|+||+|+|+|..||+..|+..|    
T Consensus       192 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~----~~~~P~lI~~~t~kg~G~~~~~~~~~H~~~  266 (651)
T 2e6k_A          192 SIDGPTDLAF-TEDVLARYRAYGWQTLRVEDVNDLEALRKAIKLAK----LDERPTLIAVRSHIGFGSPKQDSAKAHGEP  266 (651)
T ss_dssp             ETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTCHHHHHHHHHHHH----HSSSCEEEEEECCTTTTSTTTTSGGGTSSC
T ss_pred             cccccccccc-CccHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHH----HCCCCEEEEEEeEecccccccccccccccC
Confidence            9887665554 6799999999999999 999999998877666654    47899999999999999996677665    


Q ss_pred             CCHHHHHhHHHhhh
Q 018048          340 RDPGEHLVLVLFIF  353 (361)
Q Consensus       340 R~~~e~~~~~~~~~  353 (361)
                      ++++|++.|....+
T Consensus       267 ~~~~e~~~~~~~~~  280 (651)
T 2e6k_A          267 LGPEAVEATRRNLG  280 (651)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHcC
Confidence            68889988876554

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=99.90  E-value=1.2e-23  Score=222.09  Aligned_cols=162  Identities=22%  Similarity=0.226  Sum_probs=135.6

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++..++|+||+++|+|+|+|+|.+++++.+...+   .+++|||++|||++++|+++|+|++|++++|| +|+||.||+|
T Consensus       108 g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~  187 (669)
T 2r8o_A          108 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI  187 (669)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred             CcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhHhcchHHHHHHHHHHHcCCCcEEEEEECCCc
Confidence            4567889999999999999999887754332111   37899999999999999999999999999999 9999999999


Q ss_pred             ccccccccccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCC-CC-C---CC
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSL-AD-P---DE  338 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~-~D-p---~~  338 (361)
                      +++.+...+. .+|+.+++++||++++ +|||+|+.++++++++|.+   ..++|+||+++|+|..||+. .| +   ..
T Consensus       188 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~~  263 (669)
T 2r8o_A          188 SIDGHVEGWF-TDDTAMRFEAYGWHVIRDIDGHDAASIKRAVEEARA---VTDKPSLLMCKTIIGFGSPNKAGTHDSHGA  263 (669)
T ss_dssp             ETTEEGGGTC-CCCHHHHHHHTTCEEEEEEETTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred             Eecccccccc-CccHHHHHHHCCCeEEeEECCCCHHHHHHHHHHHHh---cCCCCEEEEEEeEeccCcCCcCCCCcccCC
Confidence            9877655443 5789999999999999 9999999988776666543   26899999999999999984 44 3   57


Q ss_pred             CCCHHHHHhHHHhhhc
Q 018048          339 LRDPGEHLVLVLFIFC  354 (361)
Q Consensus       339 yR~~~e~~~~~~~~~~  354 (361)
                      ||+++|++.|......
T Consensus       264 ~~~~ee~~~~~~~~~~  279 (669)
T 2r8o_A          264 PLGDAEIALTREQLGW  279 (669)
T ss_dssp             CCCHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHcCC
Confidence            9999999999876643

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=99.89  E-value=1.5e-22  Score=211.86  Aligned_cols=148  Identities=22%  Similarity=0.315  Sum_probs=121.9

Q ss_pred             CCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCccccccc
Q 018048          192 GGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSH  270 (361)
Q Consensus       192 ~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~  270 (361)
                      .++|+||+++|+|+|+|+|.++.+      .++++|||++|||++++|+++|+|++|++++|| +++|+.||+|+++...
T Consensus       118 ~~~G~lG~gl~~A~G~AlA~~~~~------~~~~~vv~v~GDG~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~  191 (616)
T 3mos_A          118 VATGSLGQGLGAACGMAYTGKYFD------KASYRVYCLLGDGELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPA  191 (616)
T ss_dssp             SCCCSTTCHHHHHHHHHHHHHHTS------CCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBC
T ss_pred             ccccccCCccHHHHHHHHHHHHhC------CCCCEEEEEECccccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCc
Confidence            478999999999999999987652      346899999999999999999999999999998 7778888999987766


Q ss_pred             ccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-CCCCCC----CHHHH
Q 018048          271 LRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELR----DPGEH  345 (361)
Q Consensus       271 ~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-Dp~~yR----~~~e~  345 (361)
                      ......+++.+++++||+++++|||+|+.++.+++++    +  .++|+||+|+|+|..||+.. |+..+-    +++|.
T Consensus       192 ~~~~~~~~~~~~~~a~G~~~~~VdG~d~~~l~~al~~----~--~~~P~lI~v~T~kg~G~~~~e~~~~~Hg~~~~~~~~  265 (616)
T 3mos_A          192 PLQHQMDIYQKRCEAFGWHAIIVDGHSVEELCKAFGQ----A--KHQPTAIIAKTFKGRGITGVEDKESWHGKPLPKNMA  265 (616)
T ss_dssp             TTTTCHHHHHHHHHHTTCEEEEEETTCHHHHHHHHHS----C--CSSCEEEEEECCTTTTSTTTTTCSSCTTCCCCHHHH
T ss_pred             ccccChHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHh----c--CCCCEEEEEEEecccccccccCchhhcCCCCCHHHH
Confidence            5555567899999999999999999999887665532    2  57999999999999999866 455442    45665


Q ss_pred             HhHHHh
Q 018048          346 LVLVLF  351 (361)
Q Consensus       346 ~~~~~~  351 (361)
                      +..+..
T Consensus       266 ~~~~~~  271 (616)
T 3mos_A          266 EQIIQE  271 (616)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            554433

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.89  E-value=3.9e-23  Score=218.33  Aligned_cols=160  Identities=21%  Similarity=0.193  Sum_probs=134.7

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++..++|+||+++|.|+|+|+|.++.+..+..++   .+++|+|++|||++++|.++|+|++|++++|| +|+||.||+|
T Consensus       110 gv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~  189 (673)
T 1r9j_A          110 GVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYI  189 (673)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSB
T ss_pred             CeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCC
Confidence            4556789999999999999999988764432222   57899999999999999999999999999999 9999999999


Q ss_pred             ccccccccccCCcchhhccccCCccEE-EEeC-CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCC----CC
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDG-MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADP----DE  338 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg-~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp----~~  338 (361)
                      +++.+...+. ..|+.+++++||++++ .||| +|+.++++++++|.+   ..++|+||+++|+|..||+..|.    ..
T Consensus       190 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~Al~~A~~---~~~~P~lI~~~T~kg~G~~~~~~~~~H~~  265 (673)
T 1r9j_A          190 SIDGSTSLSF-TEQCHQKYVAMGFHVIEVKNGDTDYEGLRKALAEAKA---TKGKPKMIVQTTTIGFGSSKQGTEKVHGA  265 (673)
T ss_dssp             CSSSBGGGTC-CCCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTSTTTTSGGGTSS
T ss_pred             ccccchhhcc-CHhHHHHHHHCCCeEEEEeCCCCCHHHHHHHHHHHHH---cCCCCEEEEEecccccccccCCCcccccC
Confidence            9987766655 6799999999999999 9999 999988776666543   36899999999999999996554    34


Q ss_pred             CCCHHHHHhHHHhh
Q 018048          339 LRDPGEHLVLVLFI  352 (361)
Q Consensus       339 yR~~~e~~~~~~~~  352 (361)
                      +++++|++.|....
T Consensus       266 ~~~~ee~~~~~~~~  279 (673)
T 1r9j_A          266 PLGEEDIANIKAKF  279 (673)
T ss_dssp             CCCHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHhc
Confidence            67888888877654

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=99.88  E-value=3.7e-22  Score=211.05  Aligned_cols=160  Identities=22%  Similarity=0.216  Sum_probs=130.7

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++..++|+||+++|+|+|+|+|.++++..+...+   ++++|||++|||++++|+++|+|++|++++|| +|+|+.||+|
T Consensus       121 ~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~  200 (675)
T 1itz_A          121 GVEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHI  200 (675)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred             CeeECCccHHhHHHHHHHHHHHhhhhcccccccccCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCc
Confidence            3456789999999999999999988754332111   68899999999999999999999999999995 9999999999


Q ss_pred             ccccccccccCCcchhhccccCCccEE-EEeCC-CHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-CCC----
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGM-DVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPD----  337 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~-D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-Dp~----  337 (361)
                      +++.+..... .+|+.+++++||++++ +|||+ |+.++++++++|.+   ..++|+||+|+|++..||+.. |+.    
T Consensus       201 ~i~~~~~~~~-~~d~~~~~~a~G~~~~~~vdG~~d~~~l~~al~~a~~---~~~~P~lI~~~T~kg~G~~~~~~~~~~H~  276 (675)
T 1itz_A          201 SIDGDTEIAF-TEDVSTRFEALGWHTIWVKNGNTGYDDIRAAIKEAKA---VTDKPTLIKVTTTIGFGSPNKANSYSVHG  276 (675)
T ss_dssp             ETTEEGGGTC-CSCHHHHHHHTTCEEEEESCTTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred             cCCCChhhhc-ChhHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHH---CCCCeEEEEEeeecccCcccccCcccccC
Confidence            9877665544 6899999999999999 99999 99988766655432   268999999999999999864 443    


Q ss_pred             CCCCHHHHHhHHHhh
Q 018048          338 ELRDPGEHLVLVLFI  352 (361)
Q Consensus       338 ~yR~~~e~~~~~~~~  352 (361)
                      .+++++|++.+....
T Consensus       277 ~~~~~e~~~~~~~~~  291 (675)
T 1itz_A          277 SALGAKEVEATRQNL  291 (675)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHc
Confidence            346788877776553

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=99.88  E-value=2.8e-22  Score=210.12  Aligned_cols=156  Identities=21%  Similarity=0.258  Sum_probs=125.5

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIG  267 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is  267 (361)
                      ++...+|+||+++|+|+|+|+|.++++..+.....+++|+|++|||++++|+++|+|++|++++|| +|+|+.||+|+++
T Consensus       108 g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG~~~Eal~~A~~~~L~~livi~nnN~~~i~  187 (632)
T 3l84_A          108 GVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGISYEACSLAGLHKLDNFILIYDSNNISIE  187 (632)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETT
T ss_pred             CcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhccHHHHHHHHHHcCCCcEEEEEECCCcccc
Confidence            345678999999999999999998775432222348899999999999999999999999999998 8899999999887


Q ss_pred             cccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-CCCCC----CCH
Q 018048          268 MSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDEL----RDP  342 (361)
Q Consensus       268 ~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-Dp~~y----R~~  342 (361)
                      .+.... ..+|+.+++++||+++++|||+|+.++.+    |++++++.++|+||+|+|++..||+.. ++..+    -++
T Consensus       188 ~~~~~~-~~~d~~~~~~a~G~~~~~vdGhd~~~l~~----al~~A~~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~~l~~  262 (632)
T 3l84_A          188 GDVGLA-FNENVKMRFEAQGFEVLSINGHDYEEINK----ALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGE  262 (632)
T ss_dssp             EEGGGT-CCCCHHHHHHHTTCEEEEEETTCHHHHHH----HHHHHHTCSSCEEEEEECCTTTTCGGGTTCGGGSSSCCCH
T ss_pred             cchhhh-cChhHHHHHHHcCCeEEEEeeCCHHHHHH----HHHHHHhCCCCEEEEEeeEeeecCCCCCCcccccCCCCCH
Confidence            655433 46789999999999999999999887755    555566788999999999999999854 33222    245


Q ss_pred             HHHHhHH
Q 018048          343 GEHLVLV  349 (361)
Q Consensus       343 ~e~~~~~  349 (361)
                      +|++...
T Consensus       263 e~~~~~~  269 (632)
T 3l84_A          263 EVIKKAK  269 (632)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=99.88  E-value=5.3e-23  Score=214.74  Aligned_cols=169  Identities=19%  Similarity=0.229  Sum_probs=130.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++...+++  ++..|.|++.+|.       .+..+  .++.++||+++|+|+|++++           .++
T Consensus       370 ~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~Gaala-----------~~~  438 (603)
T 4feg_A          370 PLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLN-----------YPE  438 (603)
T ss_dssp             BCCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHH-----------CTT
T ss_pred             CcCHHHHHHHHHHhCCCCCEEEECCchHHHHHHHhceeCCCCceecCcccccccchhHHHhhHHHh-----------CCC
Confidence            36788888888877653  4567777654442       22333  35689999999999999999           688


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccc----------ccccccCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM----------SHLRATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~----------~~~~q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++|||++|||+|+|+  +++|++|+++++|+++||.||+ |++..          ........+|+.++|++||+++++|
T Consensus       439 ~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v  516 (603)
T 4feg_A          439 RQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRV  516 (603)
T ss_dssp             SCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEE
T ss_pred             CcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCHHHHHHHCCCeEEEE
Confidence            999999999999998  8999999999999999999887 66411          1111224579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHH--cCCCCEEEEEEEe---cCCCCCCC-CCCCCCCHH
Q 018048          294 DGMDVLKVREVAKEAIERAR--RGEGPTLVECETY---RFRGHSLA-DPDELRDPG  343 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar--~~~gP~lIev~t~---R~~gHs~~-Dp~~yR~~~  343 (361)
                      ++.+  +    +++|+++++  +.+||+||||.|+   |..+|... |+..||..+
T Consensus       517 ~~~~--~----l~~al~~a~~~~~~gP~lIev~~~~~~~~~~~~~~~~~~~~~~~~  566 (603)
T 4feg_A          517 NKIE--Q----LPDVFEQAKAIAQHEPVLIDAVITGDRPLPAEKLRLDSAMSSAAD  566 (603)
T ss_dssp             CBGG--G----HHHHHHHHHHHTTTSCEEEEEECCCCCCCCTTSCCCCTTTSCHHH
T ss_pred             CCHH--H----HHHHHHHHHHhcCCCcEEEEEEeCCCCCCCcccchhhhhhhhHHH
Confidence            9766  4    456666777  7899999999994   45577766 477787443

>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}

Probab=99.87  E-value=5.5e-22  Score=209.73  Aligned_cols=159  Identities=19%  Similarity=0.187  Sum_probs=129.6

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhc------CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA------DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVEN  261 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~------~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~N  261 (361)
                      ++...+|+||+++|.|+|+|+|.++++..+.++      ..+++|+|++|||++++|.++|+|++|+.++|| +|+||.|
T Consensus       127 gv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~  206 (700)
T 3rim_A          127 GVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDR  206 (700)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEE
T ss_pred             CccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEEC
Confidence            345678999999999999999999875433221      357899999999999999999999999999998 9999999


Q ss_pred             CCcccccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCCCC---
Q 018048          262 NLWAIGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPD---  337 (361)
Q Consensus       262 N~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~---  337 (361)
                      |+|+++.+...+ ...++.+++++||+++++| ||+|+.++++++++|.+   ..++|+||+++|+|.+||+....+   
T Consensus       207 N~~si~~~~~~~-~~~~~~~~~~a~G~~~~~V~DG~D~~al~~Al~~A~~---~~~~P~lI~~~T~kG~G~~~~e~~~~~  282 (700)
T 3rim_A          207 NQISIEDDTNIA-LCEDTAARYRAYGWHVQEVEGGENVVGIEEAIANAQA---VTDRPSFIALRTVIGYPAPNLMDTGKA  282 (700)
T ss_dssp             CSEETTEEGGGT-CCCCHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTTTTSHHH
T ss_pred             CCcccccchhhc-cchhHHHHHHHcCCeEEEECCCCCHHHHHHHHHHHHH---cCCCCEEEEEEEEeeecCCccCCCccc
Confidence            999998776544 3678999999999999999 99999988776665532   268999999999999999865322   


Q ss_pred             --CCCCHHHHHhHHHh
Q 018048          338 --ELRDPGEHLVLVLF  351 (361)
Q Consensus       338 --~yR~~~e~~~~~~~  351 (361)
                        .-.+++|++.+...
T Consensus       283 Hg~~~~~e~~~~~~~~  298 (700)
T 3rim_A          283 HGAALGDDEVAAVKKI  298 (700)
T ss_dssp             HHSCCCHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHH
Confidence              22466666655443

>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*

Probab=99.87  E-value=5.4e-22  Score=210.19  Aligned_cols=157  Identities=24%  Similarity=0.299  Sum_probs=116.4

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++...+|+||+++|+|+|+|+|.++++..+.+++   .+++|||++|||++++|+++|+|++|++++|| +|+|+.||+|
T Consensus       149 gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~  228 (711)
T 3uk1_A          149 GVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGCLMEGISHEACSLAGTLKLNKLIALYDDNGI  228 (711)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred             CcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcchhhccHHHHHHHHHHhCCCcEEEEEECCCc
Confidence            3446789999999999999999987754332111   27899999999999999999999999999999 9999999999


Q ss_pred             ccccccccccCCcchhhccccCCccEEE-EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-CCCCC---
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGFH-VDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDEL---  339 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~-Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-Dp~~y---  339 (361)
                      +++.....+ ..+|+.+++++||+++++ |||+|+.++.+    |++++++.++|+||+|+|+|..||+.. ++..|   
T Consensus       229 ~i~~~~~~~-~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~----Al~~A~~~~~P~lI~v~T~kG~G~~~~e~~~~~Hg~  303 (711)
T 3uk1_A          229 SIDGDVVNW-FHDDTPKRFEAYGWNVIPNVNGHDVDAIDA----AIAKAKRSDKPSLICCKTRIGNGAATKAGGHDVHGA  303 (711)
T ss_dssp             ETTEEGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHH----HHHHHTTCSSCEEEEEEC------------------
T ss_pred             ccccchhhh-cCCCHHHHHHHcCCcEEEEeCCCCHHHHHH----HHHHHHhCCCCEEEEEccccccCCCCCCCcccccCC
Confidence            887655444 468999999999999998 99999887755    555566778999999999999999754 44443   


Q ss_pred             -CCHHHHHhHHH
Q 018048          340 -RDPGEHLVLVL  350 (361)
Q Consensus       340 -R~~~e~~~~~~  350 (361)
                       .+++|++....
T Consensus       304 ~l~~e~~~~~~~  315 (711)
T 3uk1_A          304 PLGADEIAKTRE  315 (711)
T ss_dssp             --CHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence             25666665544

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=99.86  E-value=1e-21  Score=207.04  Aligned_cols=156  Identities=24%  Similarity=0.280  Sum_probs=121.5

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhhcC---CCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEAD---CDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA  265 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~---~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~  265 (361)
                      +...+|+||+++|+|+|+|+|.++++....+++   .+++|+|++|||++++|+++|+|++|++++|| +|+|+.||+|+
T Consensus       111 ve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livi~dnN~~~  190 (663)
T 3kom_A          111 VETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLMEGVSHEACSLAGTLGLNKLVAFWDDNNIS  190 (663)
T ss_dssp             CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECC--
T ss_pred             cccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhhhchHHHHHHHHHHhCCCeEEEEEECCCcc
Confidence            446789999999999999999987754321111   27899999999999999999999999999999 88899999998


Q ss_pred             cccccccccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCCC-CCCCC---
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLA-DPDEL---  339 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~~-Dp~~y---  339 (361)
                      ++.+.... ..+|+.+++++||++++ +|||+|+.++++    |++++++ .++|+||+|+|++..||+.. ++..+   
T Consensus       191 i~~~~~~~-~~~d~~~~~~a~G~~~~~~vdG~d~~~l~~----al~~A~~~~~~P~lI~~~T~kg~G~~~~e~~~~~Hg~  265 (663)
T 3kom_A          191 IDGDTKGW-FSDNTPERFRAYGWHVIENVDGHDFVAIEK----AINEAHSQQQKPTLICCKTVIGFGSPEKAGTASVHGS  265 (663)
T ss_dssp             ---CGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHH----HHHHHHHCSSSCEEEEEECCTTTTCTTTTTCSSTTSS
T ss_pred             cccchhhh-cchhHHHHHHHCCCeEEEEEcCCCHHHHHH----HHHHHHhcCCCCEEEEEecccccccCCCCCCccccCC
Confidence            87665443 46799999999999999 999999988765    4555666 68999999999999999865 33322   


Q ss_pred             -CCHHHHHhHHH
Q 018048          340 -RDPGEHLVLVL  350 (361)
Q Consensus       340 -R~~~e~~~~~~  350 (361)
                       .+++|++....
T Consensus       266 ~l~~e~~~~~~~  277 (663)
T 3kom_A          266 PLSDQERASAAK  277 (663)
T ss_dssp             CCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence             36677665443

>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*

Probab=99.86  E-value=2e-21  Score=209.93  Aligned_cols=260  Identities=15%  Similarity=0.035  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHh-cC------CCcEEEcc-cCC---cchhhcCC
Q 018048           88 EGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKL-LK------KEDSVVST-YRD---HVHALSKG  156 (361)
Q Consensus        88 ~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~-l~------~~D~v~~~-yR~---~~~~l~~g  156 (361)
                      ++.+.+..-++...++.-.......+++.|+..++.|.--+.+.+... ++      ++|+|+.. |-.   +++.+..|
T Consensus        76 ~l~~~la~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~ael~~~l~~~~~~~~~~~~~~D~V~~~GH~sp~~Ya~~~l~G  155 (886)
T 2qtc_A           76 ELERRIRSAIRWNAIMTVLRASKKDLELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEG  155 (886)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHHHHHHHHHHHTCCCCCSSSCCCEEECCGGGHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHHHHHHHHHHHhcCCCCCCCCCCEEEEcchhHHHHHHHHHHhC
Confidence            444333444433333332222223455656666555554444333333 55      46788775 333   22333455


Q ss_pred             CCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcc
Q 018048          157 VPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTC  236 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~  236 (361)
                      .-..+-+..++....  ..|-.|..|....+..+...+|+||.++++|+|+|++.++..+.......++.|+|++|||++
T Consensus       156 r~~~e~l~~fRq~~~--~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l  233 (886)
T 2qtc_A          156 RLTQEQLDNFRQEVH--GNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEM  233 (886)
T ss_dssp             SSCHHHHTTBTCCTT--SSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGG
T ss_pred             CCCHHHHHhccCCCC--CCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccc
Confidence            432222332222111  112233333222222355668999999999999999998743222112568999999999999


Q ss_pred             cCcchHHHHHHhhhCCCC-eEEEEEcCCccccccccccc-CCcchhhccccCCccEEEE---------------------
Q 018048          237 NNGQFFECLNMAALWKLP-IVFVVENNLWAIGMSHLRAT-SDPQIYKKGPAFGMPGFHV---------------------  293 (361)
Q Consensus       237 ~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~~~~q~-~~~d~~~~A~a~Gi~~~~V---------------------  293 (361)
                      ++|+++|+|++|++++|+ +|+||.||+|+|+.+..... ...++.++.+++|+++++|                     
T Consensus       234 ~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~~v~~g~~~~~ll~~~~~~~l~~~  313 (886)
T 2qtc_A          234 DEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQL  313 (886)
T ss_dssp             GSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEEEECBCTTHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEEEEecchhHHHHHccCCchHHHHH
Confidence            999999999999999997 99999999999987655432 3467899999999999998                     


Q ss_pred             ------------------------------------------------eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          294 ------------------------------------------------DGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       294 ------------------------------------------------dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                                                                      ||+|+.++++++++|.+.   .++|+||+++|
T Consensus       314 ~~~~~d~~~q~~~~~~g~~~r~~~F~~~~~~~~l~~~~~d~~i~~l~~dGhD~~~l~~a~~~A~~~---~~~PtlI~~~T  390 (886)
T 2qtc_A          314 MNETVDGDYQTFKSKDGAYVREHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQET---KGKATVILAHT  390 (886)
T ss_dssp             HHHCCHHHHHHHTTSCHHHHHHHTSTTSHHHHTTTTTCCHHHHHTCCBGGGCHHHHHHHHHHHHHC---CSSCEEEEEEC
T ss_pred             HHhccchhhhhhhhccchHHHHhhcccchHHHHHHhhcChhhHhhcccCCCCHHHHHHHHHHHHHc---CCCCEEEEEee
Confidence                                                            699999998877776542   35899999999


Q ss_pred             ecCCCCCC--CCCC-----CCCCHHHHHhHHHhh
Q 018048          326 YRFRGHSL--ADPD-----ELRDPGEHLVLVLFI  352 (361)
Q Consensus       326 ~R~~gHs~--~Dp~-----~yR~~~e~~~~~~~~  352 (361)
                      ++.+||+.  .++.     .|++++|++.|...+
T Consensus       391 ~KG~G~~~~~e~~~~~H~~~~l~~~~~~~~r~~~  424 (886)
T 2qtc_A          391 IKGYGMGDAAKGKNIAHQVKKMNMDGVRHIRDRF  424 (886)
T ss_dssp             CTTTTCTTCC-------------CHHHHHHHHHT
T ss_pred             eeccccchhhcCCccccCCCCCCHHHHHHHHHHc
Confidence            99999973  3333     378999998887553

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=99.84  E-value=6.9e-21  Score=201.26  Aligned_cols=155  Identities=25%  Similarity=0.266  Sum_probs=123.7

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhhc---CCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKEA---DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA  265 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~---~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~  265 (361)
                      +...+|+||+++|+|+|+|+|.++++......   ..+++|+|++|||++++|+++|+|++|++++|| +|+|+.||+|+
T Consensus       135 v~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~eG~~~Eal~~A~~~~L~~livI~dnN~~~  214 (690)
T 3m49_A          135 VDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLMEGVSAEASSLAAHLQLGRLVVLYDSNDIS  214 (690)
T ss_dssp             CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSBC
T ss_pred             cccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhhhccHHHHHHHHHHhCCCeEEEEEECCCee
Confidence            34567999999999999999988775432211   137899999999999999999999999999998 88888999998


Q ss_pred             cccccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCCC-CCCCC---
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLA-DPDEL---  339 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~~-Dp~~y---  339 (361)
                      ++..... ...+|+.+++++||+++++| ||+|+.++.+    |++++++ .++|+||+|+|++..|++.. ++..+   
T Consensus       215 i~~~~~~-~~~~d~~~~~~a~G~~~~~v~DG~d~~~l~~----Al~~a~~~~~~P~lI~v~T~kG~G~~~~~~~~~~Hg~  289 (690)
T 3m49_A          215 LDGDLNR-SFSESVEDRYKAYGWQVIRVEDGNDIEAIAK----AIEEAKADEKRPTLIEVRTTIGFGSPNKSGKSASHGS  289 (690)
T ss_dssp             SSSBGGG-TCCCCHHHHHHHHTCEEEEESCTTCHHHHHH----HHHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGTSS
T ss_pred             cccchhh-ccchhHHHHHHHcCCcEEEEecCCCHHHHHH----HHHHHHhcCCCCEEEEEEeecccccCcccCcccccCC
Confidence            8776543 34578999999999999999 9999888765    5556666 78999999999999999754 43322   


Q ss_pred             -CCHHHHHhHH
Q 018048          340 -RDPGEHLVLV  349 (361)
Q Consensus       340 -R~~~e~~~~~  349 (361)
                       -+++|++...
T Consensus       290 ~~~~e~~~~~~  300 (690)
T 3m49_A          290 PLGVEETKLTK  300 (690)
T ss_dssp             CCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
Confidence             2455555443

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=99.83  E-value=6.9e-21  Score=198.27  Aligned_cols=157  Identities=21%  Similarity=0.247  Sum_probs=123.7

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      +++..++.++....++  +...+.|++.+|.       .+.++  ..+.|+||+++|+|+|+++|           .+++
T Consensus       364 ~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala-----------~~~~  432 (590)
T 1v5e_A          364 LQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNT-----------YPDR  432 (590)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHH-----------CTTS
T ss_pred             cCHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcccCCCCeEEcCCCCCcccChHHHHHHHHHh-----------CCCC
Confidence            6788899888887763  4567778765553       23344  35789999999999999999           6889


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccc---------cCCcchhhccccCCccEEEEeC
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRA---------TSDPQIYKKGPAFGMPGFHVDG  295 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q---------~~~~d~~~~A~a~Gi~~~~Vdg  295 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+..         ...+|+.++|++||+++++|++
T Consensus       433 ~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~  510 (590)
T 1v5e_A          433 QVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVSR  510 (590)
T ss_dssp             CEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHHHHHHHTTSEEEEECB
T ss_pred             eEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHHHHHHHcCCEEEEECC
Confidence            99999999999998  8999999999999999998885 6554321111         2357999999999999999985


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       296 ~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                        +.++.+++++|++.++. ++|+||||.|+|..
T Consensus       511 --~~el~~al~~a~~~~~~-~gp~liev~~~~~~  541 (590)
T 1v5e_A          511 --IEDMDRVMAEAVAANKA-GHTVVIDCKITQDR  541 (590)
T ss_dssp             --HHHHHHHHHHHHHHHHT-TCCEEEEEECCSCC
T ss_pred             --HHHHHHHHHHHHHhcCC-CCCEEEEEEecccc
Confidence              45777777776665443 89999999999865

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=99.82  E-value=6.3e-21  Score=197.61  Aligned_cols=153  Identities=16%  Similarity=0.211  Sum_probs=119.5

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      +++..++.++....+.  ++..+.|.+.+|.       .+.++  .++.|+||+++|+|+|+++|           .+++
T Consensus       371 l~~~~v~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala-----------~~~~  439 (566)
T 1ozh_A          371 LHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLV-----------NPER  439 (566)
T ss_dssp             BCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHH-----------STTS
T ss_pred             cCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHh-----------CCCC
Confidence            6788888888877653  4556777654432       23333  46789999999999999999           6789


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc---------cccCCcchhhccccCCccEEEEeC
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVDG  295 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~---------~q~~~~d~~~~A~a~Gi~~~~Vdg  295 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+         .....+|+.++|++||+++++|++
T Consensus       440 ~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~  517 (566)
T 1ozh_A          440 KVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAVES  517 (566)
T ss_dssp             EEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEECCS
T ss_pred             CEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHHHHHHHcCCeEEEeCC
Confidence            99999999999997  8999999999999999998886 65432111         123457999999999999999987


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          296 MDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       296 ~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      .+  +    ++++++++++.++|+||||.|+|.
T Consensus       518 ~~--e----l~~al~~a~~~~gp~liev~~~~~  544 (566)
T 1ozh_A          518 AE--A----LEPTLRAAMDVDGPAVVAIPVDYR  544 (566)
T ss_dssp             GG--G----HHHHHHHHHHSSSCEEEEEEBCCT
T ss_pred             HH--H----HHHHHHHHHhCCCCEEEEEEeCCC
Confidence            65  4    455666666778999999999874

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=99.82  E-value=1.3e-20  Score=194.41  Aligned_cols=155  Identities=21%  Similarity=0.270  Sum_probs=119.1

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++..+....++  ++..+.|.+.+|.       .+.++  .++.|+||+++|+|+|+++|           .++
T Consensus       356 ~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~AiGaala-----------~~~  424 (549)
T 3eya_A          356 AIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAQAT-----------EPE  424 (549)
T ss_dssp             CBCHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHHCCCCSSCEEECCTTTCCTTCHHHHHHHHHHH-----------STT
T ss_pred             CcCHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHhCccCCCCcEEeCCCCchhhhHHHHHHHHHHh-----------CCC
Confidence            36778888887776653  4556777654442       13334  35789999999999999999           688


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc---------ccCCcchhhccccCCccEEEEe
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR---------ATSDPQIYKKGPAFGMPGFHVD  294 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~---------q~~~~d~~~~A~a~Gi~~~~Vd  294 (361)
                      ++|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+.         ....+|+.++|++||+++++|+
T Consensus       425 ~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~  502 (549)
T 3eya_A          425 RQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVE  502 (549)
T ss_dssp             SCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC------------CCBCCCCCHHHHHHHTTSEEEEEC
T ss_pred             CcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCCcCCcCCCCCHHHHHHHcCCcEEEeC
Confidence            999999999999998  8999999999999888888886 544211111         1235799999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +.+  +    ++++++++++.+||+||||.|++..
T Consensus       503 ~~~--~----l~~al~~a~~~~gp~liev~~~~~~  531 (549)
T 3eya_A          503 KAS--E----VDEALQRAFSIDGPVLVDVVVAKEE  531 (549)
T ss_dssp             SGG--G----HHHHHHHHHHSSSCEEEEEEBCCCC
T ss_pred             CHH--H----HHHHHHHHHhCCCCEEEEEEecccc
Confidence            665  4    4566667777899999999998754

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=99.82  E-value=8.8e-21  Score=198.28  Aligned_cols=158  Identities=20%  Similarity=0.192  Sum_probs=124.9

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      +++..++.+|...+++  +..++.|++.+|.       .++.+  .+++|+||+++|+|+|+++|           .+++
T Consensus       393 ~~~~~~~~~L~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala-----------~~~~  461 (616)
T 2pan_A          393 VKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAA-----------DPKR  461 (616)
T ss_dssp             BCHHHHHHHHHHHSCTTEEEEECSSHHHHHHHHHCCCCSTTSEEECTTTCCTTCHHHHHHHHHHH-----------CTTC
T ss_pred             cCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHHHHHHHHh-----------CCCC
Confidence            6888899988887764  4667777655443       23333  46789999999999999999           6889


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc-------------c---ccC----Ccchhhccc
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL-------------R---ATS----DPQIYKKGP  284 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~-------------~---q~~----~~d~~~~A~  284 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+             .   ...    .+|+.++|+
T Consensus       462 ~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~  539 (616)
T 2pan_A          462 NVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYGVDHVKVAE  539 (616)
T ss_dssp             EEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCTTCGGGTTCCCCHHHHHH
T ss_pred             cEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCCCHHHHHH
Confidence            99999999999998  8999999999999988888886 65432100             0   111    379999999


Q ss_pred             cCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       285 a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +||+++++|++.+  ++.+++++|++++++.++|+||||.|+|..
T Consensus       540 a~G~~~~~v~~~~--el~~al~~a~~~~~~~~gp~lIev~~~~~~  582 (616)
T 2pan_A          540 GLGCKAIRVFKPE--DIAPAFEQAKALMAQYRVPVVVEVILERVT  582 (616)
T ss_dssp             HTTCEEEEECSGG--GHHHHHHHHHHHHHHHCSCEEEEEEBCSCC
T ss_pred             HcCCeEEEECCHH--HHHHHHHHHHhhcccCCCcEEEEEEecccc
Confidence            9999999998654  777777777776666789999999999865

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=99.81  E-value=9.7e-21  Score=194.39  Aligned_cols=153  Identities=20%  Similarity=0.298  Sum_probs=120.4

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++...+++  ++..+.|++..|.       .+.++  ..+ |+||+++|+|+|+++|           .++
T Consensus       352 ~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g-g~~G~~l~~A~G~a~a-----------~~~  419 (528)
T 1q6z_A          352 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAA-GGLGFALPAAIGVQLA-----------EPE  419 (528)
T ss_dssp             SBCHHHHHHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTT-CCTTSHHHHHHHHHHH-----------CTT
T ss_pred             CcCHHHHHHHHHhhCCCCeEEEECCcccHHHHHHhccccCCCcEECCCC-ccccchHHHHHHHHHh-----------CCC
Confidence            36788999998887763  4566777654432       12333  245 9999999999999999           678


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc----------ccCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~----------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+.          ....+|+.++|++||+++++|
T Consensus       420 ~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v  497 (528)
T 1q6z_A          420 RQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKA  497 (528)
T ss_dssp             SCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEE
T ss_pred             CcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEEEe
Confidence            899999999999999  9999999999999999998886 665322110          114579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      ++.+      +++++++++++.++|+||||.|++.
T Consensus       498 ~~~~------~l~~al~~a~~~~gp~liev~~~~~  526 (528)
T 1q6z_A          498 DNLE------QLKGSLQEALSAKGPVLIEVSTVSP  526 (528)
T ss_dssp             SSHH------HHHHHHHHHHTCSSCEEEEEEBCC-
T ss_pred             CCHH------HHHHHHHHHHHCCCcEEEEEEecCC
Confidence            8764      4567777788889999999999763

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=99.81  E-value=1.4e-20  Score=199.08  Aligned_cols=156  Identities=21%  Similarity=0.314  Sum_probs=119.1

Q ss_pred             CCCHHHHHHHHhcCc---CC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048          156 GVPARAVMSELFGKA---TG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEA  221 (361)
Q Consensus       156 g~~~~~~~~el~~~~---~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~  221 (361)
                      .+++..++.+|....   ++  ++..+.|++.+|.       .+..+  .+++|+||+++|+|+|+++|           
T Consensus       460 ~l~~~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~~~p~~~~~sg~~G~mG~~lpaAiGaalA-----------  528 (677)
T 1t9b_A          460 KIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVA-----------  528 (677)
T ss_dssp             CBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHH-----------
T ss_pred             CcCHHHHHHHHHHHhhcCCCCEEEEeCCchHHHHHHHhcccCCCCeEEeCCCcchhhchHHHHHHHHHh-----------
Confidence            367888888877765   32  3445566554443       23344  46789999999999999999           


Q ss_pred             CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc----------cccCCcchhhccccCCccE
Q 018048          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------RATSDPQIYKKGPAFGMPG  290 (361)
Q Consensus       222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~----------~q~~~~d~~~~A~a~Gi~~  290 (361)
                      .++++|||++|||+|+|+  ++||+||+++++|+++||.||+ |++....+          .....+||.++|++||+++
T Consensus       529 ~p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~  606 (677)
T 1t9b_A          529 KPESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGLKG  606 (677)
T ss_dssp             CTTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTCEE
T ss_pred             CCCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhhhcCCCcccCcCCCCCHHHHHHHcCCeE
Confidence            689999999999999997  8899999999999988888886 55422110          0124579999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       291 ~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                      ++|++.  .+    ++++++++++.++|+||||.|+|...
T Consensus       607 ~~v~~~--~e----l~~al~~a~~~~gp~lIev~~~~~~~  640 (677)
T 1t9b_A          607 LRVKKQ--EE----LDAKLKEFVSTKGPVLLEVEVDKKVP  640 (677)
T ss_dssp             EEECSH--HH----HHHHHHHHHHCSSCEEEEEEBCSSCC
T ss_pred             EEECCH--HH----HHHHHHHHHHCCCcEEEEEEecCCcc
Confidence            999754  35    45566666677899999999998654

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=99.81  E-value=1.4e-20  Score=195.79  Aligned_cols=157  Identities=22%  Similarity=0.303  Sum_probs=121.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....++  ++..+.|++.+|.       .++.+  .+++|+||+++|+|+|+++|           .++
T Consensus       376 ~l~~~~~~~~l~~~lp~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~G~~l~~AiGaala-----------~~~  444 (590)
T 1ybh_A          376 AIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVA-----------NPD  444 (590)
T ss_dssp             BCCHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHH-----------CTT
T ss_pred             CcCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccchHHHHHHHHHh-----------CCC
Confidence            36888999988887763  4566777654442       23343  46679999999999999999           678


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc----------cc--c------CCcchhhcccc
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----------RA--T------SDPQIYKKGPA  285 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~----------~q--~------~~~d~~~~A~a  285 (361)
                      ++|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+          ..  .      ..+|+.++|++
T Consensus       445 ~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d~~~~a~a  522 (590)
T 1ybh_A          445 AIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAA  522 (590)
T ss_dssp             SCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHHH
T ss_pred             CcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCccccccccccccccCCCCCHHHHHHH
Confidence            999999999999998  8999999999999888888886 65432110          00  1      14699999999


Q ss_pred             CCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCC
Q 018048          286 FGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH  331 (361)
Q Consensus       286 ~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gH  331 (361)
                      ||+++++|++.  .+    ++++++++++.++|+||||.|+|....
T Consensus       523 ~G~~~~~v~~~--~e----l~~al~~a~~~~gp~liev~~~~~~~~  562 (590)
T 1ybh_A          523 CGIPAARVTKK--AD----LREAIQTMLDTPGPYLLDVICPHQEHV  562 (590)
T ss_dssp             TTCCEEEECBH--HH----HHHHHHHHHHSSSCEEEEEECCTTCCC
T ss_pred             cCCeEEEeCCH--HH----HHHHHHHHHhCCCCEEEEEEecCCccc
Confidence            99999999754  34    456666666778999999999987643

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=99.81  E-value=1.9e-20  Score=194.84  Aligned_cols=157  Identities=21%  Similarity=0.255  Sum_probs=122.6

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....+.  ++..+.|.+.+|.       .+.++  ..+.|+||+++|+|+|+++|           .++
T Consensus       374 ~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaala-----------~~~  442 (589)
T 2pgn_A          374 PASMFRAMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTSMAEGILGCGFPMALGAQLA-----------EPN  442 (589)
T ss_dssp             SCCHHHHHHHHHHTCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESCTTTCCTTCHHHHHHHHHHH-----------CTT
T ss_pred             CcCHHHHHHHHHHhCCCCCEEEEcCchHHHHHHHhcccCCCCcEECCCCcchhhhHHHHHHHHHHh-----------CCC
Confidence            36888999999887763  4566777654442       23344  34679999999999999999           678


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc---------cccCCcchhhccccCCccEEEEe
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL---------RATSDPQIYKKGPAFGMPGFHVD  294 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~---------~q~~~~d~~~~A~a~Gi~~~~Vd  294 (361)
                      ++|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+         .....+|+.++|++||+++++|+
T Consensus       443 ~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~  520 (589)
T 2pgn_A          443 SRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTEFMNPDWVGIAKAFGAYGESVR  520 (589)
T ss_dssp             SCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHHHTCEEEECT
T ss_pred             CcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCccccCCCCCHHHHHHHCCCeEEEEC
Confidence            999999999999998  7999999999999999998887 55432211         12235799999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCC
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGH  331 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gH  331 (361)
                      +.+  ++    +++++++++.++|+||||.|+|..+.
T Consensus       521 ~~~--el----~~al~~a~~~~gp~liev~~~~~~~~  551 (589)
T 2pgn_A          521 ETG--DI----AGALQRAIDSGKPALIEIPVSKTQGL  551 (589)
T ss_dssp             TTC--CH----HHHHHHHHHHCSCEEEEEECCSSSST
T ss_pred             CHH--HH----HHHHHHHHhCCCCEEEEEEecCCCCc
Confidence            776  44    55555666678999999999986543

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=99.80  E-value=2e-20  Score=194.03  Aligned_cols=153  Identities=22%  Similarity=0.228  Sum_probs=119.2

Q ss_pred             CCCHHHHHHHHhcCcC-------CCcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048          156 GVPARAVMSELFGKAT-------GCCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLK  219 (361)
Q Consensus       156 g~~~~~~~~el~~~~~-------g~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~  219 (361)
                      .+++..++.++....+       .++..+.|.+.+|.       .+.++  .++.|+||+++|+|+|+++|         
T Consensus       381 ~~~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~l~~AiGaa~a---------  451 (573)
T 2iht_A          381 GMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMA---------  451 (573)
T ss_dssp             SBCHHHHHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHH---------
T ss_pred             CcCHHHHHHHHHHhcccccCCCCcEEEEcCcHhHHHHHHhcCcCCCCeEEcCCCCcccccHHHHHHHHHHh---------
Confidence            3678888888776653       34566777655432       13343  45789999999999999999         


Q ss_pred             hcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc---------c--cccCCcchhhccccCC
Q 018048          220 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH---------L--RATSDPQIYKKGPAFG  287 (361)
Q Consensus       220 ~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~---------~--~q~~~~d~~~~A~a~G  287 (361)
                        .++++|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....         .  .....+|+.++|++||
T Consensus       452 --~~~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G  527 (573)
T 2iht_A          452 --RPDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEANG  527 (573)
T ss_dssp             --STTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHTT
T ss_pred             --CCCCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcCCCcCccccCCCCCHHHHHHHcC
Confidence              678999999999999998  8999999999999988888886 6553321         0  2233579999999999


Q ss_pred             ccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          288 MPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       288 i~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      +++++|++.+  +    ++++++++++.+||+||||.|+|
T Consensus       528 ~~~~~v~~~~--~----l~~al~~a~~~~gp~liev~~~~  561 (573)
T 2iht_A          528 VDATRATNRE--E----LLAALRKGAELGRPFLIEVPVNY  561 (573)
T ss_dssp             CEEEECCSHH--H----HHHHHHHHHTSSSCEEEEEEBCC
T ss_pred             CeEEEeCCHH--H----HHHHHHHHHhCCCCEEEEEECCC
Confidence            9999997543  4    56677777778899999999988

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=99.80  E-value=2.8e-20  Score=192.47  Aligned_cols=155  Identities=18%  Similarity=0.291  Sum_probs=118.9

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .+++..++.++....+.  +...+.|++.+|.       .+.++  .++.|+||+++|+|+|+++|.+ .        ++
T Consensus       369 ~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~~G~~l~~AiGaa~a~~-~--------~~  439 (563)
T 2uz1_A          369 ALHPFHASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGSMGVGFGTALGAQVADL-E--------AG  439 (563)
T ss_dssp             SCCHHHHHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCCTTTHHHHHHHHHHHHH-H--------HT
T ss_pred             CcCHHHHHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCccccChHHHHHHHHHHhh-C--------CC
Confidence            46888999999888764  4567777654432       23333  3567999999999999999953 1        57


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc-------cc----cCCcchhhccccCCccEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL-------RA----TSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~-------~q----~~~~d~~~~A~a~Gi~~~~  292 (361)
                      ++|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+       ..    ...+|+.++|++||+++++
T Consensus       440 ~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~  517 (563)
T 2uz1_A          440 RRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRLENGSYHGVAAAFGADGYH  517 (563)
T ss_dssp             CEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBCCCCCHHHHHHHTTCEEEE
T ss_pred             CeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcCCCCCHHHHHHHcCCeEEE
Confidence            899999999999998  8899999999999988888886 65533211       11    1347999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      |++.  .++    +++++++++.++|+||||.|++
T Consensus       518 v~~~--~~l----~~al~~a~~~~gp~liev~~~~  546 (563)
T 2uz1_A          518 VDSV--ESF----SAALAQALAHNRPACINVAVAL  546 (563)
T ss_dssp             ECSH--HHH----HHHHHHHHHSSSCEEEEEECCS
T ss_pred             eCCH--HHH----HHHHHHHHHCCCCEEEEEEecc
Confidence            9754  354    5566666667899999999974

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=99.79  E-value=4.9e-20  Score=190.02  Aligned_cols=152  Identities=14%  Similarity=0.108  Sum_probs=118.9

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCce
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHV  226 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~  226 (361)
                      +++..++.+|....++  ++..+.|...+..      .+.++  .++.|+||+++|+|+|+++|           .++++
T Consensus       360 ~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~a-----------~~~~~  428 (552)
T 1ovm_A          360 LTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTA-----------CPNRR  428 (552)
T ss_dssp             CCHHHHHHHHHHHCCTTCEEEECTTHHHHHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHH-----------CTTSC
T ss_pred             cCHHHHHHHHHHhcCCCCEEEECCchHHHHHHhcccCCCCeEEechhhHhhhhHHHHHHHHHHh-----------CCCCc
Confidence            6888999988877753  4566777643221      12233  46789999999999999999           67899


Q ss_pred             EEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc------cccCCcchhhccccCCc----cEEEEeC
Q 018048          227 TLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------RATSDPQIYKKGPAFGM----PGFHVDG  295 (361)
Q Consensus       227 Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~------~q~~~~d~~~~A~a~Gi----~~~~Vdg  295 (361)
                      |||++|||+|+|+  +++|.||+++++|+++||.||+ |++.....      .....+|+.++|++||+    ++++|++
T Consensus       429 vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~v~~  506 (552)
T 1ovm_A          429 VIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVSE  506 (552)
T ss_dssp             EEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEECB
T ss_pred             EEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcccCCCCCHHHHHHHhCCCcCCCEEEeCC
Confidence            9999999999988  8999999999999888888886 66542111      12245799999999999    9999986


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          296 MDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       296 ~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      .+  +    ++++++++++.++|+||||.|++
T Consensus       507 ~~--~----l~~al~~a~~~~gp~liev~~~~  532 (552)
T 1ovm_A          507 AE--Q----LADVLEKVAHHERLSLIEVMLPK  532 (552)
T ss_dssp             HH--H----HHHHHHHHTTCSSEEEEEEECCT
T ss_pred             HH--H----HHHHHHHHHhCCCCEEEEEEcCc
Confidence            54  4    56677777778899999999976

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=99.79  E-value=5.8e-20  Score=190.33  Aligned_cols=154  Identities=14%  Similarity=0.111  Sum_probs=118.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.++....++  ++..|.|+..+..      .+.++  .+++|+||+++|+|+|+++|           .+++
T Consensus       376 ~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala-----------~~~~  444 (570)
T 2vbf_A          376 PLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIA-----------DKES  444 (570)
T ss_dssp             BCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHH-----------CTTS
T ss_pred             CcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHHhcccCCCCeEecCccchhhhhhHHHHHHHHHh-----------CCCC
Confidence            46788999998887763  4566777643221      12233  36789999999999999999           6889


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc------cccCCcchhhccccCCcc-----EEEE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------RATSDPQIYKKGPAFGMP-----GFHV  293 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~------~q~~~~d~~~~A~a~Gi~-----~~~V  293 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++.....      .....+|+.++|++||++     +++|
T Consensus       445 ~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v  522 (570)
T 2vbf_A          445 RHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKIV  522 (570)
T ss_dssp             EEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEEE
T ss_pred             cEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEEe
Confidence            99999999999997  8999999999999888888775 66532111      112457999999999999     8999


Q ss_pred             eCCCHHHHHHHHHHHHHH-HHcCCCCEEEEEEEecC
Q 018048          294 DGMDVLKVREVAKEAIER-ARRGEGPTLVECETYRF  328 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~-ar~~~gP~lIev~t~R~  328 (361)
                      ++.+  +    +++++++ +++.++|+||||.|+|.
T Consensus       523 ~~~~--e----l~~al~~a~~~~~~p~liev~~~~~  552 (570)
T 2vbf_A          523 RTEN--E----FVSVMKEAQADVNRMYWIELVLEKE  552 (570)
T ss_dssp             CBHH--H----HHHHHHHHHHCTTSEEEEEEECCTT
T ss_pred             cCHH--H----HHHHHHHHHhcCCCcEEEEEEcCcc
Confidence            7643  4    4556665 46788999999999864

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=99.78  E-value=9.3e-20  Score=188.74  Aligned_cols=152  Identities=16%  Similarity=0.122  Sum_probs=112.2

Q ss_pred             CCHHHHHHHHhcCc--C-C-CcccCCCccccc-------cccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          157 VPARAVMSELFGKA--T-G-CCRGQGGSMHMF-------SKEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       157 ~~~~~~~~el~~~~--~-g-~~~gd~G~~h~~-------~~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      +++..++..+....  + + +...++|+...+       ..+.++  .+++|+||+++|+|+|+++|            +
T Consensus       375 ~~~~~~~~~l~~~l~~~~~~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaala------------~  442 (568)
T 2c31_A          375 MNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWGVMGIGMGYCVAAAAV------------T  442 (568)
T ss_dssp             BCHHHHHHHHHHHHHHCCSSEEEEESSHHHHHHHHHCCCCSTTCEEESTTTTCSSCHHHHHHHHHHH------------H
T ss_pred             cCHHHHHHHHHHHhcCCCCeEEEECChhHHHHHHHHhcccCCCeEEcCCCCccccccHHHHHHHHhC------------C
Confidence            56777777777665  4 2 344454432211       112222  56789999999999999998            4


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-c-ccccccc---c-----ccCCcchhhccccCCccEEEE
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-W-AIGMSHL---R-----ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y-~is~~~~---~-----q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      +++|||++|||+|+|+  +++|+|++++++|+++||.||+ | .+ ...+   .     ....+||.++|++||+++++|
T Consensus       443 ~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v  519 (568)
T 2c31_A          443 GKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNGGIYKG-NEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVA  519 (568)
T ss_dssp             CSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESSBSSCS-CCCCSBTTBCCTTBCCCCCHHHHHHTTTCEEEEE
T ss_pred             CCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHH-HHHHhhcCCcccCcCCCCCHHHHHHHcCCeEEEe
Confidence            7889999999999998  8999999999999999999997 2 22 1111   0     034579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      ++.  .++    +++++++++.++|+||||.|+|..
T Consensus       520 ~~~--~el----~~al~~a~~~~~p~liev~~~~~~  549 (568)
T 2c31_A          520 NTP--AEL----KAALEEAVASGKPCLINAMIDPDA  549 (568)
T ss_dssp             SSH--HHH----HHHHHHHHHHTSCEEEEEEBCTTS
T ss_pred             CCH--HHH----HHHHHHHHhCCCCEEEEEEecccc
Confidence            754  455    455555556789999999998753

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=99.78  E-value=4.3e-20  Score=191.32  Aligned_cols=154  Identities=18%  Similarity=0.206  Sum_probs=117.4

Q ss_pred             CCCHHHHHHHHhcCcCC----Cc-ccCCCcccccc---ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG----CC-RGQGGSMHMFS---KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g----~~-~gd~G~~h~~~---~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.++....++    +. ..|.|+..++.   .+..+  .+++|+||+++|+|+|+++|           .+++
T Consensus       373 ~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala-----------~~~~  441 (565)
T 2nxw_A          373 PIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDMIDAGLMAPGYYAGMGFGVPAGIGAQCV-----------SGGK  441 (565)
T ss_dssp             BCCHHHHHHHHHHHHHTTCCCCEEEECSSHHHHHHTTSCCSCEECCTTTCCTTCHHHHHHHHHHH-----------TTTC
T ss_pred             ccCHHHHHHHHHHhcccccCCEEEEecchHHHHHHHhCCCcEEEccCccccccccchHHHHHHHh-----------CCCC
Confidence            36788888888776543    44 67777643221   23333  45689999999999999999           6789


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc-----cccCCcchhhccccCCccEEEEeCCCHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL-----RATSDPQIYKKGPAFGMPGFHVDGMDVL  299 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~-----~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~  299 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+     .....+|+.++|++||+++++|++.+  
T Consensus       442 ~vv~i~GDG~~~~~--~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~--  517 (565)
T 2nxw_A          442 RILTVVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGMGGDGVRVRTRA--  517 (565)
T ss_dssp             CEEEEEEHHHHHHH--GGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGGTSEEEEECBHH--
T ss_pred             cEEEEEechHHHhh--HHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHcCCCEEEeCCHH--
Confidence            99999999999988  9999999999999888888886 55421111     12245799999999999999998653  


Q ss_pred             HHHHHHHHHHHHHHcCCCCE-EEEEEEecC
Q 018048          300 KVREVAKEAIERARRGEGPT-LVECETYRF  328 (361)
Q Consensus       300 ~v~~al~~Al~~ar~~~gP~-lIev~t~R~  328 (361)
                      +    ++++++++++.++|+ ||||.|++.
T Consensus       518 e----l~~al~~a~~~~gp~~liev~~~~~  543 (565)
T 2nxw_A          518 E----LKAALDKAFATRGRFQLIEAMIPRG  543 (565)
T ss_dssp             H----HHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred             H----HHHHHHHHHhcCCCeEEEEEEcccc
Confidence            4    455666666677898 999999763

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=99.78  E-value=6.7e-20  Score=189.52  Aligned_cols=158  Identities=16%  Similarity=0.117  Sum_probs=119.5

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.+|....++  ++..+.|+..++.      .+.++  .++.|+||+++|+|+|+++|.+.+       +.++
T Consensus       364 ~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~~~-------~~~~  436 (563)
T 2vk8_A          364 PLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEI-------DPKK  436 (563)
T ss_dssp             BCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGSCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHH-------CTTC
T ss_pred             CcCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhcCcCCCCeEEcccchhhhhhHHHHHHHHHHhCccc-------CCCC
Confidence            37899999999988763  4566777543221      12233  467899999999999999997654       4568


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc------cccCCcchhhccccCCcc---EEEEeC
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------RATSDPQIYKKGPAFGMP---GFHVDG  295 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~------~q~~~~d~~~~A~a~Gi~---~~~Vdg  295 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++.....      .....+||.++|++||++   +++|++
T Consensus       437 ~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~v~~  514 (563)
T 2vk8_A          437 RVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRVAT  514 (563)
T ss_dssp             CEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEECB
T ss_pred             CEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHHHHHhCCCCCcEEEecC
Confidence            99999999999998  8999999999999988888886 66532111      112457999999999999   999986


Q ss_pred             CCHHHHHHHHHHHHH-HHHcC-CCCEEEEEEEecC
Q 018048          296 MDVLKVREVAKEAIE-RARRG-EGPTLVECETYRF  328 (361)
Q Consensus       296 ~D~~~v~~al~~Al~-~ar~~-~gP~lIev~t~R~  328 (361)
                      .+  +    +.++++ ++++. ++|+||||.|++.
T Consensus       515 ~~--e----l~~al~~~a~~~~~~p~liev~~~~~  543 (563)
T 2vk8_A          515 TG--E----WDKLTQDKSFNDNSKIRMIEVMLPVF  543 (563)
T ss_dssp             HH--H----HHHHHTCTTTTSCSSEEEEEEECCTT
T ss_pred             HH--H----HHHHHHHHHHhCCCCcEEEEEEeCcc
Confidence            43  4    455665 55554 4799999999763

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=99.78  E-value=6.5e-20  Score=189.84  Aligned_cols=154  Identities=21%  Similarity=0.318  Sum_probs=118.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.++....++  ++..+.|.+.+..      .+.++  .+++|+||+++|+|+|+++|           .+++
T Consensus       360 ~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala-----------~~~~  428 (566)
T 2vbi_A          360 GLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMG-----------SQDR  428 (566)
T ss_dssp             CCCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHT-----------CTTS
T ss_pred             ccCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheECCCCCEEEecCcccchhhHHHHHHHHHHh-----------CCCC
Confidence            47889999998887763  4556677532111      12333  36789999999999999999           6789


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc----cccCCcchhhccccCCc-----cEEEEeC
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL----RATSDPQIYKKGPAFGM-----PGFHVDG  295 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~----~q~~~~d~~~~A~a~Gi-----~~~~Vdg  295 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+    .....+|+.++|++||+     ++++|++
T Consensus       429 ~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~v~~  506 (566)
T 2vbi_A          429 QHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGHGLGLKATT  506 (566)
T ss_dssp             EEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCCCEEEEECS
T ss_pred             cEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHHcCCCCCCccEEEeCC
Confidence            99999999999997  8899999999999888888775 65533221    12245799999999999     9999985


Q ss_pred             CCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecC
Q 018048          296 MDVLKVREVAKEAIERARRG-EGPTLVECETYRF  328 (361)
Q Consensus       296 ~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~  328 (361)
                      .+  +    ++++++++++. +||+||||.|+|.
T Consensus       507 ~~--e----l~~al~~a~~~~~gp~liev~~~~~  534 (566)
T 2vbi_A          507 PK--E----LTEAIARAKANTRGPTLIECQIDRT  534 (566)
T ss_dssp             HH--H----HHHHHHHHHHCCSSCEEEEEECCTT
T ss_pred             HH--H----HHHHHHHHHhcCCCcEEEEEEeCcc
Confidence            43  4    45566666666 8999999999874

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=99.77  E-value=1.4e-19  Score=187.41  Aligned_cols=154  Identities=19%  Similarity=0.224  Sum_probs=118.3

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCccccc-----c-ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMF-----S-KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~-----~-~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .+++..++.++....++  ++..|.|++.+.     . .+.++  .+++++||+++|+|+|+++|           .+++
T Consensus       364 ~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~~A~G~ala-----------~~~~  432 (568)
T 2wvg_A          364 PLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVG-----------APER  432 (568)
T ss_dssp             BCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHHHHHHHHHH-----------CTTS
T ss_pred             ccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhhcccCCCCeEEeCCCcchhhhHHHHHHHHHHh-----------CCCC
Confidence            37899999999988764  456677753211     1 12333  46789999999999999999           6889


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc----ccCCcchhhccccCCc---------cEE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----ATSDPQIYKKGPAFGM---------PGF  291 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~----q~~~~d~~~~A~a~Gi---------~~~  291 (361)
                      +|||++|||+|+|+  +++|+||+++++|+++||.||+ |++....+.    ....+|+.++|++||+         +++
T Consensus       433 ~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~~~~  510 (568)
T 2wvg_A          433 RNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGKGL  510 (568)
T ss_dssp             EEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEEE
T ss_pred             cEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCCCCCCHHHHHHHhCCCcccccCCcceE
Confidence            99999999999997  8999999999999888888775 665332211    1245799999999999         899


Q ss_pred             EEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEecC
Q 018048          292 HVDGMDVLKVREVAKEAIERARRG-EGPTLVECETYRF  328 (361)
Q Consensus       292 ~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~R~  328 (361)
                      +|++.+  ++    +++++++++. ++|+||||.|+|.
T Consensus       511 ~v~~~~--el----~~al~~a~~~~~gp~liev~~~~~  542 (568)
T 2wvg_A          511 KAKTGG--EL----AEAIKVALANTDGPTLIECFIGRE  542 (568)
T ss_dssp             EESBHH--HH----HHHHHHHHHCCSSCEEEEEECCTT
T ss_pred             EeCCHH--HH----HHHHHHHHhcCCCcEEEEEEcCcc
Confidence            997543  54    5566666665 8999999999874

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=99.77  E-value=3.9e-19  Score=183.83  Aligned_cols=153  Identities=18%  Similarity=0.164  Sum_probs=112.8

Q ss_pred             CCCHHHHHHHHhcCc--C-C-CcccCCCccccc--------cccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048          156 GVPARAVMSELFGKA--T-G-CCRGQGGSMHMF--------SKEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEA  221 (361)
Q Consensus       156 g~~~~~~~~el~~~~--~-g-~~~gd~G~~h~~--------~~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~  221 (361)
                      .+++..++.++....  + + ++..++++ +++        ..+.++  .+++|+||+++|+|+|+++|           
T Consensus       369 ~~~~~~~~~~l~~~l~~~~d~ivv~dg~~-~~~~~~~~~~~~~p~~~~~~g~~g~~G~~l~~AiGaa~a-----------  436 (564)
T 2q28_A          369 PLNYFNALSAVRDVLRENQDIYLVNEGAN-TLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVT-----------  436 (564)
T ss_dssp             SBCHHHHHHHHHHHHTTCTTCEEEEESSH-HHHHHHHHSCCCSSSCEEESTTTTCTTCHHHHHHHHHHH-----------
T ss_pred             CcCHHHHHHHHHHHhcCCCCEEEEECCch-HHHHHHHHhcccCCCeEecCCCCCcccchHHHHHHHhhc-----------
Confidence            367778888877765  3 2 34444443 221        112233  56789999999999999998           


Q ss_pred             CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-c-ccccccc----c------ccCCcchhhccccCCcc
Q 018048          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-W-AIGMSHL----R------ATSDPQIYKKGPAFGMP  289 (361)
Q Consensus       222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y-~is~~~~----~------q~~~~d~~~~A~a~Gi~  289 (361)
                       ++++|||++|||+|+|+  .++|.||+++++|+++||.||+ | .+ ...+    .      ....+||.++|++||++
T Consensus       437 -~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~  512 (564)
T 2q28_A          437 -SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRG-DGVDLSGAGAPSPTDLLHHARYDKLMDAFRGV  512 (564)
T ss_dssp             -HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCS-CCCCTTSSCCCCTTBCCTTCCGGGGGGGGTCE
T ss_pred             -CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHH-HHHHHhccCCccccccCCCCCHHHHHHHcCCe
Confidence             47889999999999997  7999999999999999999997 2 22 1111    0      01257999999999999


Q ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          290 GFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       290 ~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                      +++|++.  .++    +++++++++.++|+||||.|+|...
T Consensus       513 ~~~v~~~--~el----~~al~~a~~~~~p~liev~~~~~~~  547 (564)
T 2q28_A          513 GYNVTTT--DEL----RHALTTGIQSRKPTIINVVIDPAAG  547 (564)
T ss_dssp             EEEECSH--HHH----HHHHHHHHHHTSCEEEEEEBCTTSS
T ss_pred             EEEeCCH--HHH----HHHHHHHHhCCCCEEEEEEeccccC
Confidence            9999754  455    5555555567899999999987543

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=99.75  E-value=4e-19  Score=183.67  Aligned_cols=151  Identities=15%  Similarity=0.102  Sum_probs=110.9

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCccc-c---c---cccccc---cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMH-M---F---SKEHNL---LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h-~---~---~~~~~~---~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      .+++..++.++...+++  ++..+.+... .   +   .....+   .+..|+||+ +|+|+|+++|            +
T Consensus       366 ~~~~~~~~~~l~~~l~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~-l~~A~Gaa~a------------~  432 (556)
T 3hww_A          366 AFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGL-LSTAAGVQRA------------S  432 (556)
T ss_dssp             SSSHHHHHHTGGGTCCTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSH-HHHHHHHHHH------------H
T ss_pred             CcCHHHHHHHHHHhCCCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccH-HHHHHHHHhc------------C
Confidence            57889999999888774  2222222211 1   1   112222   256778888 9999999998            4


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccc-c---cc------ccCCcchhhccccCCccEEE
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMS-H---LR------ATSDPQIYKKGPAFGMPGFH  292 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~-~---~~------q~~~~d~~~~A~a~Gi~~~~  292 (361)
                      +++|||++|||+|+|+  .++|+||+++++|+++||.||+ |++... .   ..      ....+||.++|++||+++++
T Consensus       433 ~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~  510 (556)
T 3hww_A          433 GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKYHR  510 (556)
T ss_dssp             CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHHHTTCEEEC
T ss_pred             CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHHHcCCcEEe
Confidence            7889999999999998  8999999999999999999998 443211 0   01      12468999999999999999


Q ss_pred             EeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          293 VDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       293 Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      |++.+      +++++++++++.+||+||||.|++
T Consensus       511 v~~~~------~l~~al~~a~~~~gp~liev~~~~  539 (556)
T 3hww_A          511 PQNWQ------ELETAFADAWRTPTTTVIEMVVND  539 (556)
T ss_dssp             CSSHH------HHHHHHHHHTTSSSEEEEEEECCS
T ss_pred             cCCHH------HHHHHHHHHHhCCCCEEEEEECCc
Confidence            98664      456778888888999999999865

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=99.74  E-value=2.1e-19  Score=187.47  Aligned_cols=152  Identities=15%  Similarity=0.016  Sum_probs=114.7

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCccccc-----cc---cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMF-----SK---EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADC  223 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~-----~~---~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~  223 (361)
                      .+++..++.+|....++  ++..+.|....+     ..   +.++  ..+.+.||+++|+|+|+++|            +
T Consensus       404 ~~~~~~~~~~L~~~lp~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~G~~~ig~~l~~AiGaala------------~  471 (604)
T 2x7j_A          404 VSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEKQDRPFRIYSNRGANGIDGVVSSAMGVCEG------------T  471 (604)
T ss_dssp             TTSHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHHCCCBSCCCEEECCTTTCCSSSHHHHHHHHHHH------------H
T ss_pred             CCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHhcccCCCCceEEeCCCcCCcCcHHHHHHHHHhc------------C
Confidence            46788888888877763  344556654332     11   3333  34578999999999999999            3


Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccc-ccccc-----------cCCcchhhccccCCccE
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGM-SHLRA-----------TSDPQIYKKGPAFGMPG  290 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~-~~~~q-----------~~~~d~~~~A~a~Gi~~  290 (361)
                      +++|||++|||+|+|+  +++|+||+++++|+++||.||+ |++.. ....|           ...+||.++|++||+++
T Consensus       472 ~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~~~~~~~~~~~~d~~~~a~a~G~~~  549 (604)
T 2x7j_A          472 KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTHFEDLFGTPTGLDFKHAAALYGGTY  549 (604)
T ss_dssp             TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHHHHHHTTCCCCCCTHHHHHHTTCEE
T ss_pred             CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchhhHhhccCCCCCCHHHHHHHcCCeE
Confidence            6789999999999998  7899999999999988888775 66521 11111           13579999999999999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          291 FHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       291 ~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ++|++.+  +    ++++++++++.++|+||||.|+|
T Consensus       550 ~~v~~~~--e----l~~al~~a~~~~gp~liev~~~~  580 (604)
T 2x7j_A          550 SCPASWD--E----FKTAYAPQADKPGLHLIEIKTDR  580 (604)
T ss_dssp             ECCSSHH--H----HHHHCCCCCSSCCEEEEEEECCH
T ss_pred             EecCCHH--H----HHHHHHHHHhCCCCEEEEEECCc
Confidence            9998643  4    56667666777899999999875

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=99.71  E-value=2e-18  Score=179.21  Aligned_cols=112  Identities=21%  Similarity=0.204  Sum_probs=83.7

Q ss_pred             ccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-ccccccc-ccc
Q 018048          196 FIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSH-LRA  273 (361)
Q Consensus       196 ~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~-~~q  273 (361)
                      .+|+++|+|+|+++             ++++|||++|||+|+|+  .+||+||+++++|+++||.||+ |++.... +.|
T Consensus       437 G~~g~l~~AiGaa~-------------~~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~  501 (578)
T 3lq1_A          437 GIDGVVSSALGASV-------------VFQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQAN  501 (578)
T ss_dssp             CSSSHHHHHHHHTT-------------TSSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC------------
T ss_pred             ccccHHHHHHHHhc-------------CCCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCcccccccccc
Confidence            34447999999963             47899999999999998  8999999999999999999997 5442110 111


Q ss_pred             -----------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          274 -----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       274 -----------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                                 ...+||.++|++||+++++|++.+      ++++|++++++.+||+||||.|++.
T Consensus       502 ~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~------el~~al~~a~~~~gp~liev~~~~~  561 (578)
T 3lq1_A          502 EPKYFESLFGTSTELDFRFAAAFYDADYHEAKSVD------ELEEAIDKASYHKGLDIIEVKTNRH  561 (578)
T ss_dssp             -------------CCCTHHHHHHTTCEEEECCSHH------HHHHHHHHHTTSSSEEEEEEC----
T ss_pred             ccchhhhhccCCCCCCHHHHHHHcCCceEecCCHH------HHHHHHHHHHhCCCCEEEEEECCcc
Confidence                       134799999999999999998554      4566777778889999999999774

>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*

Probab=99.44  E-value=1e-13  Score=154.58  Aligned_cols=99  Identities=13%  Similarity=0.110  Sum_probs=77.3

Q ss_pred             CCceEEEEECCC-cccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc------------------CCcchhhcc
Q 018048          223 CDHVTLAFFGDG-TCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT------------------SDPQIYKKG  283 (361)
Q Consensus       223 ~~~~Vv~~~GDG-s~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~------------------~~~d~~~~A  283 (361)
                      +++.||++.||| +|+||  .++|.||+++++||++||.||+ .+++....+.                  ..+|+.++|
T Consensus       952 ~~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~-~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA 1028 (1231)
T 2c42_A          952 TKKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTE-VYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMV 1028 (1231)
T ss_dssp             SCCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECS-SBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHH
T ss_pred             cCCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECH-HHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHH
Confidence            358999999999 89999  9999999999999999999998 4444331110                  136999999


Q ss_pred             ccCCccEEEEe-C-CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          284 PAFGMPGFHVD-G-MDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       284 ~a~Gi~~~~Vd-g-~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      ++||++++++. - .++.++..    +++++++.+||+|||+.+.-.
T Consensus      1029 ~a~G~~~va~~~v~~~~~~l~~----al~eAl~~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A         1029 MTYGYVYVATVSMGYSKQQFLK----VLKEAESFPGPSLVIAYATCI 1071 (1231)
T ss_dssp             HTTSSSEEEEECTTTCHHHHHH----HHHHHHHSSSCEEEEEECCCG
T ss_pred             HHCCCCEEEEEeccCCHHHHHH----HHHHHHhcCCCEEEEEeecCc
Confidence            99999999654 3 37666654    555555679999999998654

>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*

Probab=99.29  E-value=3.7e-12  Score=136.20  Aligned_cols=130  Identities=17%  Similarity=0.181  Sum_probs=109.6

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcc---hHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQ---FFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~---~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++....|+||++++.|+|+|+.           +++..|+|++|||..++|.   .|+...++..+++. ++.|+.+|+|
T Consensus       169 Gve~~tG~LGqGls~AvG~A~~-----------~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~N~~  237 (845)
T 3ahc_A          169 GSIHEGGELGYALSHAYGAVMN-----------NPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGY  237 (845)
T ss_dssp             TCSCCCSSTTCHHHHHHHHHTT-----------CTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEECSB
T ss_pred             CeecCCCCccchHhHHhhhhhc-----------CCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEECCCC
Confidence            4456679999999999999976           6889999999999999998   78888888888998 8888899999


Q ss_pred             ccccccccc-cCCcchhhccccCCccEE-EEeC-C--CHHHHHHHHHHHHHH-----------HHc--CCCC--EEEEEE
Q 018048          265 AIGMSHLRA-TSDPQIYKKGPAFGMPGF-HVDG-M--DVLKVREVAKEAIER-----------ARR--GEGP--TLVECE  324 (361)
Q Consensus       265 ~is~~~~~q-~~~~d~~~~A~a~Gi~~~-~Vdg-~--D~~~v~~al~~Al~~-----------ar~--~~gP--~lIev~  324 (361)
                      .|..++... ....++.++.++||+..+ .||| +  |+.++.+++.+|++.           +++  .++|  .+|.++
T Consensus       238 ~i~g~t~l~~~~~e~l~~rf~a~Gw~v~~~vdG~~~~D~~~i~~a~~~al~~~~~~i~~i~~~A~~~~~~kP~w~~Ii~r  317 (845)
T 3ahc_A          238 KIANPTILARISDEELHDFFRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFR  317 (845)
T ss_dssp             SSSSBCHHHHSCHHHHHHHHHHTTEEEEEEECSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCEEEEEEE
T ss_pred             cCCCCccccccCcHHHHHHHHHCCCEEeEEeCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEE
Confidence            987766432 245689999999999999 9999 8  999999887766643           343  3689  999999


Q ss_pred             EecCC
Q 018048          325 TYRFR  329 (361)
Q Consensus       325 t~R~~  329 (361)
                      |.+..
T Consensus       318 T~kG~  322 (845)
T 3ahc_A          318 TPKGW  322 (845)
T ss_dssp             CCTTT
T ss_pred             CcccC
Confidence            99988

>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*

Probab=94.51  E-value=0.26  Score=50.61  Aligned_cols=107  Identities=19%  Similarity=0.128  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...++|+|+|.-+-.... +.....|  ..|..
T Consensus        57 ~~A~GyAr~t----------g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~Q--~~d~~  121 (589)
T 2pgn_A           57 WMVNGYNYVK----------DRSAAVGAWHCVGNLLL---HAAMQEARTGRIPAVHIGLNSDGRLAGRSEAAQ--QVPWQ  121 (589)
T ss_dssp             HHHHHHHHHH----------TSCCEEEEEEGGGGGGC---HHHHHHHHHTTCCEEEEEEESCGGGTTCTTCSS--CCCGG
T ss_pred             HHHHHHHHHH----------CCCEEEEEecCchHHHH---HHHHHHHHhcCCCEEEEecCCcccccCCCCccc--ccChh
Confidence            3566766652          33457788888888884   5689999999999999988765221 1110122  23444


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      . .+.+--...++.  ++.++...+.+|+..+..++ ||+.|++-.+
T Consensus       122 ~-~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  165 (589)
T 2pgn_A          122 S-FTPIARSTQRVE--RLDKVGEAIHEAFRVAEGHPAGPAYVDIPFD  165 (589)
T ss_dssp             G-GTTTSSEEEECC--SGGGHHHHHHHHHHHHTSSSCCEEEEEEETH
T ss_pred             h-ccccEEEEeecC--CHHHHHHHHHHHHHHHhcCCCccEEEEeCHh
Confidence            5 555555555664  45578889999999998876 9999988654

>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*

Probab=94.36  E-value=0.12  Score=52.59  Aligned_cols=108  Identities=13%  Similarity=-0.051  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...++|+|+|.-+-....  .........|...
T Consensus        55 ~~A~GyAr~t----------g~~~v~~~TsGpG~~N~---~~gi~~A~~~~vPvl~itg~~~~~~--~~~~~~Q~~d~~~  119 (549)
T 3eya_A           55 FAAGAEAQLS----------GELAVCAGSCGPGNLHL---INGLFDCHRNHVPVLAIAAHIPSSE--IGSGYFQETHPQE  119 (549)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEESCGGG--TTSCCTTCCCHHH
T ss_pred             HHHHHHHHHh----------CCCEEEEeCCCCcHhhh---HHHHHHHHhhCCCEEEEeCCCchhh--cCCCCCCccCHHH
Confidence            3466666652          22344555557776663   5689999999999999987654111  1111112346677


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      +.+.+--....+.  ++.++.+.+.+|+..+....||+.|++-.+
T Consensus       120 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d  162 (549)
T 3eya_A          120 LFRECSHYCELVS--SPEQIPQVLAIAMRKAVLNRGVSVVVLPGD  162 (549)
T ss_dssp             HTSTTCSEEEECC--SGGGHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred             HHhhhhheEEEeC--CHHHHHHHHHHHHHHHhhCCCCEEEEeChh
Confidence            7776666666665  445888899999999988889999998653

>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*

Probab=94.31  E-value=0.13  Score=52.50  Aligned_cols=108  Identities=18%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCC-cchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSD-PQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~-~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...++|+|+|+-+-....-  ....... .|..
T Consensus        55 ~~A~Gyar~t----------g~p~v~~~TsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~--~~~~~Q~~~d~~  119 (563)
T 2uz1_A           55 HAAEGYARAG----------AKLGVALVTAGGGFTNA---VTPIANAWLDRTPVLFLTGSGALRDD--ETNTLQAGIDQV  119 (563)
T ss_dssp             HHHHHHHHHH----------TSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGT--TSCCTTCCCCHH
T ss_pred             HHHHHHHHHh----------CCCEEEEEccCccHHHH---HHHHHHHHhcCCCEEEEeCCCCcccC--CchhhhhhccHH
Confidence            4566776662          22234444445566663   56788899999999999887652211  1111123 4667


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      .+.+.+--...++.  ++.++...+.+|+..++.++ ||+.|++-.+
T Consensus       120 ~~~~~~tk~~~~v~--~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~d  164 (563)
T 2uz1_A          120 AMAAPITKWAHRVM--ATEHIPRLVMQAIRAALSAPRGPVLLDLPWD  164 (563)
T ss_dssp             HHHGGGCSEEEECC--CGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred             HHhhhhhceEEEcC--CHHHHHHHHHHHHHHhcCCCCceEEEEeCHH
Confidence            77777766666775  45588889999999998876 9999998765

>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*

Probab=94.26  E-value=0.14  Score=52.86  Aligned_cols=106  Identities=16%  Similarity=0.066  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~~~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|+.+.   ...+..|...++|+|+|+-+-... ++.   ......|..
T Consensus        64 ~aA~GyAr~t----------g~~gv~~~TsGpG~~N~---~~gia~A~~~~vPvl~itG~~~~~~~~~---~~~Q~~d~~  127 (603)
T 4feg_A           64 MAAAADAKLT----------GKIGVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNM---DTFQEMNEN  127 (603)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTS---CCTTCCCCG
T ss_pred             HHHHHHHHHh----------CCceEEEecCCchHHHH---HHHHHHHHHcCCCEEEEecCCcccccCC---CccccccHH
Confidence            3466666652          22334555557777763   567999999999999998654311 111   111224566


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      .+.+.+--...+|...+  ++.+.+.+|+..|....||+.|++-.
T Consensus       128 ~~~~~~tk~~~~v~~~~--~~~~~i~~A~~~A~~~~GPV~l~iP~  170 (603)
T 4feg_A          128 PIYADVADYNVTAVNAA--TLPHVIDEAIRRAYAHQGVAVVQIPV  170 (603)
T ss_dssp             GGGTTTCSEEEECCCST--THHHHHHHHHHHHHHHTSEEEEEEET
T ss_pred             HHhhhhceEEEEcCCHH--HHHHHHHHHHHHHhcCCCCEEEEeCh
Confidence            66666666666776544  77778899998888888999999864

>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*

Probab=94.13  E-value=0.12  Score=53.04  Aligned_cols=108  Identities=24%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|.|.+.+.          +.-.++++..|=|+.+.   ...+..|...++|+|+|+-+-....-  ........|...
T Consensus        64 ~~A~Gyar~t----------g~p~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~--g~~~~Q~~d~~~  128 (590)
T 1ybh_A           64 FAAEGYARSS----------GKPGICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRMI--GTDAFQETPIVE  128 (590)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGT--TTTCTTCCCHHH
T ss_pred             HHHHHHHHHH----------CCCEEEEeccCchHHHH---HHHHHHHHhhCCCEEEEeCcCCcccc--CCCcccccCHHH
Confidence            4567777662          23344555556665553   66899999999999999886642211  111122346667


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +.+.+--...+|.  ++.++...+++|+..++.++ ||+.|++-.+
T Consensus       129 ~~~~~~k~~~~v~--~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~d  172 (590)
T 1ybh_A          129 VTRSITKHNYLVM--DVEDIPRIIEEAFFLATSGRPGPVLVDVPKD  172 (590)
T ss_dssp             HHGGGSSEEEECC--CGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHhCeEEecC--CHHHHHHHHHHHHHHHhhCCCceEEEEeCcc
Confidence            7777666666665  45588889999999998764 8999998664

>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*

Probab=93.98  E-value=0.13  Score=52.63  Aligned_cols=108  Identities=17%  Similarity=0.059  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...++|+|+|+-+-....-  ........|...
T Consensus        62 ~~A~Gyar~t----------g~p~v~~~TsGpG~~N~---~~~l~~A~~~~vPll~itg~~~~~~~--~~~~~Q~~d~~~  126 (566)
T 1ozh_A           62 FMAAAVGRIT----------GKAGVALVTSGPGCSNL---ITGMATANSEGDPVVALGGAVKRADK--AKQVHQSMDTVA  126 (566)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTTC--------CCCHHH
T ss_pred             HHHHHHHHHH----------CCCEEEEEccChHHHHH---HHHHHHHHhcCCCEEEEeCCCccccC--CCCcccccCHHH
Confidence            4566766652          22234444446666663   66788999999999999887652211  111112346677


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +.+.+--...+|.  ++.++...+++|+..+..++ ||+.|++-.+
T Consensus       127 ~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~d  170 (566)
T 1ozh_A          127 MFSPVTKYAIEVT--APDALAEVVSNAFRAAEQGRPGSAFVSLPQD  170 (566)
T ss_dssp             HHGGGCSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHhheEEEcC--CHHHHHHHHHHHHHHHhcCCCCeEEEEeChh
Confidence            7777766667775  45578888999999998874 9999998765

>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}

Probab=93.85  E-value=0.24  Score=50.59  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-cccc-ccc----cC
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSH-LRA----TS  275 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~-~~q----~~  275 (361)
                      -+|.|.+.+.          + -.++++..|=|..+.   ...+..|...++|+|+|+-+-.... +... ..+    ..
T Consensus        55 ~~A~Gyar~t----------g-~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~  120 (566)
T 2vbi_A           55 FSAEGYARSN----------G-AAAAVVTFSVGAISA---MNALGGAYAENLPVILISGAPNSNDQGTGHILHHTIGKTD  120 (566)
T ss_dssp             HHHHHHHHHH----------S-CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred             HHHHHHHhhc----------C-CeEEEEeCCCCHHHH---HHHHHHHHhhCCCEEEEECCCChHHhccCceeeeeccCcc
Confidence            4567777662          3 334444457777662   5578889999999999998765221 1100 001    01


Q ss_pred             CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ..|...+.+.+--....+...+  ++...+++|+..+..++||+.|++-.+-
T Consensus       121 ~~d~~~~~~~~tk~~~~v~~~~--~~~~~l~~A~~~a~~~~GPV~l~iP~d~  170 (566)
T 2vbi_A          121 YSYQLEMARQVTCAAESITDAH--SAPAKIDHVIRTALRERKPAYLDIACNI  170 (566)
T ss_dssp             CTHHHHHHHTTCSEEEEECSSS--SHHHHHHHHHHHHHHHTCCEEEEEETTT
T ss_pred             hHHHHHHHhhhEeEEEEeCCHH--HHHHHHHHHHHHHHhCCCCEEEEechhh
Confidence            1356777777777777886554  6777889999998888899999997653

>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*

Probab=93.76  E-value=0.14  Score=52.49  Aligned_cols=109  Identities=11%  Similarity=0.052  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccc-cccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL-RATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~-~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   .-.+..|...++|+|+|.-+-....-  .. ......|..
T Consensus        62 ~~A~Gyar~t----------g~p~v~~~TsGpG~~N~---~~~v~~A~~~~~Pll~itg~~~~~~~--~~~~~~Q~~d~~  126 (573)
T 2iht_A           62 VAADVLARIT----------GRPQACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDI--FPNDTHQCLDSV  126 (573)
T ss_dssp             HHHHHHHHHH----------CSCEEEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGC--CTTTSTTCCCHH
T ss_pred             HHHHHHHHHH----------CCCEEEEEccCchHHHH---HHHHHHHHhhCCCEEEEcccCccccc--CCcCccccCCHH
Confidence            3466666652          22234444456565552   56788999999999999887652221  11 112234667


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEec
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETYR  327 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R  327 (361)
                      .+.+.+--...++.  ++.++...+++|++.++.++ ||+.|++-.+-
T Consensus       127 ~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv  172 (573)
T 2iht_A          127 AIVAPMSKYAVELQ--RPHEITDLVDSAVNAAMTEPVGPSFISLPVDL  172 (573)
T ss_dssp             HHHGGGSSEEEECC--SGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHH
T ss_pred             HHHHhHhhEEEEcC--CHHHHHHHHHHHHHHHhcCCCceEEEEecchH
Confidence            77777666666765  45578889999999998876 99999997653

>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*

Probab=93.69  E-value=0.18  Score=52.92  Aligned_cols=107  Identities=22%  Similarity=0.157  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      -+|.|.+.+.          +.-.+++|..|=|+.+.   .-.+..|...++|+|+|+-+-....  .........|...
T Consensus       134 ~aAdGyAr~t----------Gkpgvv~~TsGpG~~N~---~~gia~A~~d~vPllvItG~~~~~~--~g~~a~Q~~Dq~~  198 (677)
T 1t9b_A          134 HMAEGYARAS----------GKPGVVLVTSGPGATNV---VTPMADAFADGIPMVVFTGQVPTSA--IGTDAFQEADVVG  198 (677)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECSTHHHHTT---HHHHHHHHHHTCCEEEEEEECCTTT--TTSCCTTCCCHHH
T ss_pred             HHHHHHHHHH----------CCCEEEEECCChHHHHH---HHHHHHHHHcCCCEEEEeCCCChhh--cCCCCccccCHHH
Confidence            4567777662          23345555566666663   6678999999999999987654211  1111112345666


Q ss_pred             ccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEE
Q 018048          282 KGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECET  325 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t  325 (361)
                      +.+.+--..+.|.  ++.++...+++|++.++.+ .||+.|++-.
T Consensus       199 i~~~~tk~~~~v~--~~~~i~~~i~~A~~~A~~grpGPV~l~lP~  241 (677)
T 1t9b_A          199 ISRSCTKWNVMVK--SVEELPLRINEAFEIATSGRPGPVLVDLPK  241 (677)
T ss_dssp             HTGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             HhhhheeEEEEcC--CHHHHHHHHHHHHHHHhhCCCceEEEEcCH
Confidence            6666655566665  5568888999999999886 5999999973

>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*

Probab=93.54  E-value=0.29  Score=49.99  Aligned_cols=110  Identities=14%  Similarity=0.102  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccc-cc----cC
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHL-RA----TS  275 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~-~q----~~  275 (361)
                      -+|.|.+.+.          + -.++++..|=|+.+.   ...+..|...++|+|+|+-+-.... +.... .+    ..
T Consensus        55 ~~A~Gyar~t----------g-~~v~~~TsGpG~~N~---~~gia~A~~~~vPll~itg~~~~~~~~~~~~~~~~~g~~~  120 (568)
T 2wvg_A           55 FSAEGYARAK----------G-AAAAVVTYSVGALSA---FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTD  120 (568)
T ss_dssp             HHHHHHHHHH----------S-CEEEEECTTTTHHHH---HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSC
T ss_pred             HHHHHHHHhh----------C-CeEEEEeCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCChhHhccCcceeeeccccc
Confidence            4567777662          3 345555567776662   5678889999999999998765221 11000 01    01


Q ss_pred             CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ..|...+.+.+--....|..  +.++...+++|+..+..+.||+.|++-.+-
T Consensus       121 ~~d~~~~~~~~tk~~~~v~~--~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv  170 (568)
T 2wvg_A          121 YHYQLEMAKNITAAAEAIYT--PEEAPAKIDHVIKTALREKKPVYLEIACNI  170 (568)
T ss_dssp             CCHHHHHHTTSCSCEEEECS--GGGHHHHHHHHHHHHHHHTCCEEEEEEGGG
T ss_pred             hHHHHHHHHhhEeEEEEeCC--HHHHHHHHHHHHHHHHhCCCCEEEEechhH
Confidence            13567777777777778864  447778889999999888899999997654

>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*

Probab=93.49  E-value=0.21  Score=51.04  Aligned_cols=110  Identities=16%  Similarity=0.074  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-ccccc--ccccCCcc
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSH--LRATSDPQ  278 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~--~~q~~~~d  278 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   .-.+..|...++|+|+|+-+-... ++...  ..+....|
T Consensus        73 ~~A~GyAr~t----------gkp~v~~~TsGpG~~N~---~~gv~~A~~~~vPll~itg~~~~~~~~~~~~~~~~~q~~d  139 (565)
T 2nxw_A           73 FAADAAARYS----------STLGVAAVTYGAGAFNM---VNAVAGAYAEKSPVVVISGAPGTTEGNAGLLLHHQGRTLD  139 (565)
T ss_dssp             HHHHHHHHHH----------TSCEEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTCC--CCCC-------C
T ss_pred             HHHHHHHHHh----------CCCeEEEECCCCCHHHH---HHHHHHHHhhCCCEEEEeCCCChhhhccCcceeeeccchh
Confidence            3466666652          22234444446666653   668889999999999998875321 11100  01111233


Q ss_pred             -hhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          279 -IYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       279 -~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                       ...+.+.+--...++...+  ++...+++|+..+....||+.|++-.+
T Consensus       140 ~q~~~~~~~~k~~~~v~~~~--~~~~~i~~A~~~A~~~~GPV~l~iP~D  186 (565)
T 2nxw_A          140 TQFQVFKEITVAQARLDDPA--KAPAEIARVLGAARAQSRPVYLEIPRN  186 (565)
T ss_dssp             HHHHHHTTSCSCEEECCCTT--THHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred             hHHHHHHhhheEEEEeCCHH--HHHHHHHHHHHHHHhCCCCEEEECChh
Confidence             5566667766667776443  677788889888887789999999854

>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}

Probab=93.31  E-value=0.27  Score=50.65  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      =+|.|.+.+.          +.-.++++..|=|+.+.   .-.+..|...++|+|+|.-+-....-  ........|...
T Consensus        83 ~aA~GyAr~t----------gkpgv~~~TsGpG~~N~---~~gia~A~~~~vPlv~ItG~~~~~~~--g~~~~Q~~d~~~  147 (604)
T 2x7j_A           83 FFALGLAKAK----------QRPVLLICTSGTAAANF---YPAVVEAHYSRVPIIVLTADRPHELR--EVGAPQAINQHF  147 (604)
T ss_dssp             HHHHHHHHHH----------TSCEEEEECSSHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGS--SSCCTTCCCCTT
T ss_pred             HHHHHHHHhh----------CCCEEEEECChhHHHHH---HHHHHHHhhcCCCEEEEeCCCCHHHh--CCCCCCcCcHHH
Confidence            3466766662          22344555556666663   66799999999999999877642211  111112345666


Q ss_pred             ccccCCccEEEEeCCCH-----HHHHHHHHHHHHHHHc-CCCCEEEEEEEe
Q 018048          282 KGPAFGMPGFHVDGMDV-----LKVREVAKEAIERARR-GEGPTLVECETY  326 (361)
Q Consensus       282 ~A~a~Gi~~~~Vdg~D~-----~~v~~al~~Al~~ar~-~~gP~lIev~t~  326 (361)
                      +.+.+--....|...+-     ..+...+++|+..+.. ..||+.|++-.+
T Consensus       148 ~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  198 (604)
T 2x7j_A          148 LFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLR  198 (604)
T ss_dssp             TTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECC
T ss_pred             HhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccC
Confidence            66666666777765441     0167788999998887 459999999865

>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*

Probab=92.57  E-value=0.3  Score=49.29  Aligned_cols=109  Identities=17%  Similarity=0.118  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...++|+|+|.-+-.... +. ...|. ..|..
T Consensus        52 ~~A~Gyar~t----------g~~~v~~~tsGpG~~N~---~~~l~~A~~~~~Pll~itg~~~~~~~~~-~~~q~-~~d~~  116 (528)
T 1q6z_A           52 GIADGYAQAS----------RKPAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGV-EALLT-NVDAA  116 (528)
T ss_dssp             HHHHHHHHHH----------TSCEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTT-TCTTC-CTTGG
T ss_pred             HHHHHHHHHh----------CCCEEEEEcCChHHHHH---HHHHHHHhhcCCCEEEEeCCCcccccCC-Ccccc-cccHH
Confidence            4566777662          23344555567777763   5678889999999999987654211 11 11121 13666


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEEec
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECETYR  327 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t~R  327 (361)
                      .+.+.+--...++.  ++.++...+.+|+..++.++ ||+.|++-.+-
T Consensus       117 ~~~~~~~k~~~~v~--~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~  162 (528)
T 1q6z_A          117 NLPRPLVKWSYEPA--SAAEVPHAMSRAIHMASMAPQGPVYLSVPYDD  162 (528)
T ss_dssp             GSSTTSCSCEECCS--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred             HHHHHhhHhhhcCC--CHHHHHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence            66666655555554  44577788999999998765 79999997754

>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}

Probab=92.34  E-value=0.46  Score=48.64  Aligned_cols=108  Identities=16%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhc
Q 018048          203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKK  282 (361)
Q Consensus       203 ~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~  282 (361)
                      +|.|.|.+.          +.-.++++..|=|+.+.   .-.+..|...++|+|+|.-+-....  .........|...+
T Consensus        64 aAdGyAr~t----------G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~p~~~--~g~~~~Qe~d~~~~  128 (578)
T 3lq1_A           64 FALGLAKAS----------KRPVVLLCTSGTAAANY---FPAVAEANLSQIPLIVLTADRPHEL--RNVGAPQAMDQLHL  128 (578)
T ss_dssp             HHHHHHHHH----------CCCEEEEECSSHHHHTT---HHHHHHHHHTTCCEEEEEEECCGGG--TTSSCTTCCCCTTT
T ss_pred             HHHHHHHhh----------CCCEEEEECCchhhhhh---hHHHHHHHhcCCCeEEEeCCCCHHh--hcCCCCCCcCHhhH
Confidence            466777662          33345555567777763   5679999999999999987543211  01111122355666


Q ss_pred             cccCCccEEEEeCCC-HHH----HHHHHHHHHHHHHcC-CCCEEEEEEE
Q 018048          283 GPAFGMPGFHVDGMD-VLK----VREVAKEAIERARRG-EGPTLVECET  325 (361)
Q Consensus       283 A~a~Gi~~~~Vdg~D-~~~----v~~al~~Al~~ar~~-~gP~lIev~t  325 (361)
                      .+.+--....|...+ +.+    +...+++|+..|..+ .||+.|++-.
T Consensus       129 ~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~  177 (578)
T 3lq1_A          129 YGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPL  177 (578)
T ss_dssp             TGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEC
T ss_pred             HhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECcc
Confidence            666655566665443 222    334678888888876 5999999975

>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}

Probab=92.31  E-value=0.15  Score=50.12  Aligned_cols=107  Identities=18%  Similarity=0.185  Sum_probs=61.3

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccc--ccccccCCc
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDP  277 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~--~~~~q~~~~  277 (361)
                      .+.+|+|++++            ..+.++...|.|-..+   .+.|..++..++|+++++.+-. +.+.  +...+... 
T Consensus        76 a~~~a~Gaa~a------------G~r~~~~ts~~G~~~~---~d~l~~aa~~~~P~Vi~~~~~~-~~~~g~~~~~~~sd-  138 (395)
T 1yd7_A           76 SIAAAIGASWA------------GAKAMTATSGPGFSLM---QENIGYAVMTETPVVIVDVQRS-GPSTGQPTLPAQGD-  138 (395)
T ss_dssp             HHHHHHHHHHT------------TCCEEEEEETTHHHHH---TTTCC----CCCCEEEEEEC------------------
T ss_pred             HHHHHHHHHHh------------CCcEEEEeCchHHHHH---HHHHHHHHhcCCCEEEEEeeCC-CCCCCCCcccchhH-
Confidence            45678888887            4567778888887663   3456667788999888888765 2221  11111111 


Q ss_pred             chhhc-cc--cCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          278 QIYKK-GP--AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       278 d~~~~-A~--a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      .+..+ +.  .+|++.+..  .++.+.+..+..|++.+++.+.|+++....
T Consensus       139 ~~~~~~~~~g~~g~~vl~p--~~~qea~~l~~~A~~lA~~~~~PVi~~~~~  187 (395)
T 1yd7_A          139 IMQAIWGTHGDHSLIVLSP--STVQEAFDFTIRAFNLSEKYRTPVILLTDA  187 (395)
T ss_dssp             ----------CCCCEEECC--CSHHHHHHHHHHHHHHHHHHTSEEEEEECH
T ss_pred             HHHHHhccCCCcceEEEeC--CCHHHHHHHHHHHHHHHHHHCCCEEEEcch
Confidence            11112 11  235555544  567789888999999888888999987754

>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*

Probab=92.12  E-value=0.31  Score=50.09  Aligned_cols=93  Identities=15%  Similarity=0.012  Sum_probs=61.6

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al  305 (361)
                      ++++..|=|..+.   .-.+..|...++|+|+|+-+-..........|  ..|...+.+.+--..+.+.  ++.++...+
T Consensus        71 v~~~tsGpG~~N~---~~gl~~A~~~~vPll~Itg~~p~~~~g~~~~Q--~~d~~~~~~~~tk~~~~v~--~~~~~~~~i  143 (590)
T 1v5e_A           71 VTVGSGGPGASHL---INGLYDAAMDNIPVVAILGSRPQRELNMDAFQ--ELNQNPMYDHIAVYNRRVA--YAEQLPKLV  143 (590)
T ss_dssp             EEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTT--CCCCHHHHHTTCSEEEECC--SGGGHHHHH
T ss_pred             EEEeCcChHHHHH---HHHHHHHHhcCCCEEEEcCCCCcccCCCCccc--ccCHHHHHHhhccEEEEeC--CHHHHHHHH
Confidence            4444446555552   66788899999999999887652211111122  2455666666655556664  555888899


Q ss_pred             HHHHHHHHcCC-CCEEEEEEEe
Q 018048          306 KEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       306 ~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      ++|++.+..++ ||+.| +-.+
T Consensus       144 ~~A~~~A~~~~~GPV~l-iP~d  164 (590)
T 1v5e_A          144 DEAARMAIAKRGVAVLE-VPGD  164 (590)
T ss_dssp             HHHHHHHHHTTSEEEEE-EETT
T ss_pred             HHHHHHHhcCCCceEEE-Eccc
Confidence            99999998877 99999 6543

>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*

Probab=91.99  E-value=0.22  Score=50.70  Aligned_cols=109  Identities=15%  Similarity=0.217  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...++|+|+|.-+-.... +. ........|..
T Consensus        59 ~~A~Gyar~t----------g~pgv~~~TsGpG~~N~---~~gi~~A~~~~vPll~itg~~~~~~~~~-~~~~~Q~~dq~  124 (564)
T 2q28_A           59 YAAAASGFLT----------QKPGICLTVSAPGFLNG---LTALANATVNGFPMIMISGSSDRAIVDL-QQGDYEELDQM  124 (564)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHT-TSCCTTCCCHH
T ss_pred             HHHHHHHHHh----------CCCEEEEEccCchHHHH---HHHHHHHHhcCCCEEEEeCCCCccccCC-CCCccccccHH
Confidence            3466766652          22234455556665552   5678889999999999988765221 10 01111224566


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      .+.+.+--...+|.  ++.++...+++|+..+..+ .||+.|++-.+
T Consensus       125 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  169 (564)
T 2q28_A          125 NAAKPYAKAAFRVN--QPQDLGIALARAIRVSVSGRPGGVYLDLPAN  169 (564)
T ss_dssp             HHHGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHhhheeeecC--CHHHHHHHHHHHHHHHhcCCCceEEEEcCHH
Confidence            66666666666775  4457888899999999884 59999988654

>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*

Probab=91.96  E-value=0.24  Score=50.56  Aligned_cols=109  Identities=14%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~  280 (361)
                      -+|.|.+.+.          +.-.++++..|=|..+.   ...+..|...++|+|+|.-+-.... +. ........|..
T Consensus        61 ~~A~GyAr~t----------g~pgv~~~TsGpG~~N~---~~~i~~A~~~~vPll~itg~~~~~~~~~-~~~~~Q~~dq~  126 (568)
T 2c31_A           61 YAASIAGYIE----------GKPGVCLTVSAPGFLNG---VTSLAHATTNCFPMILLSGSSEREIVDL-QQGDYEEMDQM  126 (568)
T ss_dssp             HHHHHHHHHH----------SSCEEEEECSHHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHT-TCCCTTCCCHH
T ss_pred             HHHHHHHHHh----------CCCEEEEEcCCccHHHH---HHHHHHHHhcCCCEEEEccCCCccccCC-CCCcccccCHH
Confidence            3466666652          22234555556666652   5678899999999999988764221 10 01111224566


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEe
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-GEGPTLVECETY  326 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~  326 (361)
                      .+.+.+--....+.  ++.++...+.+|+..+.. ..||+.|++-.+
T Consensus       127 ~~~~~~tk~~~~v~--~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d  171 (568)
T 2c31_A          127 NVARPHCKASFRIN--SIKDIPIGIARAVRTAVSGRPGGVYVDLPAK  171 (568)
T ss_dssp             HHSGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCEEEEEEETH
T ss_pred             HHHHhhhheeeecC--CHHHHHHHHHHHHHHhcCCCCceEEEeCCHH
Confidence            67766666666665  455788899999999987 459999988654

>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}

Probab=91.84  E-value=0.89  Score=46.81  Aligned_cols=107  Identities=19%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEE--EEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcch
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTL--AFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQI  279 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv--~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~  279 (361)
                      -+|.|.+.+           ..+++.+  +..|=|..+.   .-.+..|...++|+|+|+-+-.....  ........|.
T Consensus        79 ~~A~GyAr~-----------tgg~~~v~~~TsGpG~~N~---~~~l~~A~~~~vPlvvItg~~p~~~~--~~~~~Q~~d~  142 (616)
T 2pan_A           79 HMAEGYTRA-----------TAGNIGVCLGTSGPAGTDM---ITALYSASADSIPILCITGQAPRARL--HKEDFQAVDI  142 (616)
T ss_dssp             HHHHHHHHH-----------STTCCEEEEECSTHHHHTS---HHHHHHHHHTTCCEEEEEEECCGGGT--TTTCTTCCCH
T ss_pred             HHHHHHHHh-----------cCCCceEEEeCCCchHHHH---HHHHHHHHhcCCCEEEEecCCccccc--CcccccccCH
Confidence            456677766           2244444  4456665653   56789999999999999887652211  1111123566


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcC-CCCEEEEEEEe
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      ..+++.+--..+.+.  ++.++...+++|+..+..+ .||+.|++-.+
T Consensus       143 ~~~~~~~tk~~~~v~--~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d  188 (616)
T 2pan_A          143 EAIAKPVSKMAVTVR--EAALVPRVLQQAFHLMRSGRPGPVLVDLPFD  188 (616)
T ss_dssp             HHHHGGGSSEEEECC--SGGGHHHHHHHHHHHHHSSSCCCEEEEEEHH
T ss_pred             HHHHHHHHHhhcccC--CHHHHHHHHHHHHHHHhcCCCceEEEEcchh
Confidence            677777666666664  4558888999999988876 49999998654

>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*

Probab=90.09  E-value=0.66  Score=47.32  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-cccc-ccc---c-C
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSH-LRA---T-S  275 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~-~~q---~-~  275 (361)
                      -+|.|.+.+.          + -.++++..|=|..+.   .-.+..|...++|+|+|+-+..... +... ..|   . .
T Consensus        77 ~~A~GyAr~t----------G-~~v~~~tsGpG~~N~---~~gi~~A~~~~vPlv~itg~~~~~~~~~~~~~~~~~~~~~  142 (570)
T 2vbf_A           77 YMADGYARTK----------K-AAAFLTTFGVGELSA---INGLAGSYAENLPVVEIVGSPTSKVQNDGKFVHHTLADGD  142 (570)
T ss_dssp             HHHHHHHHHH----------S-CEEEEEETTHHHHHH---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSC
T ss_pred             HHHHHHHHHh----------C-CeEEEEcCCCCHHHH---HHHHHHHhhhCCCEEEEeCCCCHHHhhccccceeeccccc
Confidence            4577777652          3 334455556665552   5578889999999999998765221 1100 000   0 1


Q ss_pred             CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ..+...+.+.+--..+.+..   .++...+++|+..+....||+.|++-.+
T Consensus       143 ~~~~~~~~~~~tk~~~~v~~---~~~~~~l~~A~~~A~~~~GPV~l~iP~d  190 (570)
T 2vbf_A          143 FKHFMKMHEPVTAARTLLTA---ENATYEIDRVLSQLLKERKPVYINLPVD  190 (570)
T ss_dssp             CCHHHHHTGGGCSEEEECCT---TTHHHHHHHHHHHHHHHCCCEEEEEEHH
T ss_pred             hHHHHHHhhhhEEEEEEECc---ccHHHHHHHHHHHHhhCCCCEEEEcchh
Confidence            12345667777667777765   3677788889988887789999999764

>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*

Probab=89.56  E-value=0.63  Score=47.35  Aligned_cols=109  Identities=9%  Similarity=0.018  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-cc--ccc---cccC
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM--SHL---RATS  275 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~--~~~---~q~~  275 (361)
                      -+|.|.+.+.          + -.++++..|=|+.+.   .-.+..|...++|+|+|+-+-.... ..  ..+   .+..
T Consensus        56 ~~A~Gyar~t----------g-~~v~~~TsGpG~~N~---~~gia~A~~~~~Pll~itg~~~~~~~~~~~~~~~~~g~~~  121 (563)
T 2vk8_A           56 YAADGYARIK----------G-MSCIITTFGVGELSA---LNGIAGSYAEHVGVLHVVGVPSISAQAKQLLLHHTLGNGD  121 (563)
T ss_dssp             HHHHHHHHHH----------S-CEEEEEETTHHHHHH---HHHHHHHHHHTCCEEEEEEECCHHHHHTTCCCTTSCSSSC
T ss_pred             HHHHHHHHhh----------C-CcEEEEcCCCcHHHH---HHHHHHHHhhCCCEEEEECCCChHHhhcccccccccCCcc
Confidence            4566766662          3 234555557777662   5578889999999999987654211 00  000   0011


Q ss_pred             CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ..+...+.+.+--....+...+  ++.+.+.+|+..+....||+.|++-.+
T Consensus       122 ~q~~~~~~~~~~k~~~~v~~~~--~~~~~i~~A~~~A~~~~GPV~l~iP~d  170 (563)
T 2vk8_A          122 FTVFHRMSANISETTAMITDIA--TAPAEIDRCIRTTYVTQRPVYLGLPAN  170 (563)
T ss_dssp             SSHHHHHHHTTCSEEEECCCTT--THHHHHHHHHHHHHHHTSCEEEEEETT
T ss_pred             hHHHHHHhhhhEEEEEEeCCHH--HHHHHHHHHHHHHHhCCCCEEEEechh
Confidence            1245667777766667776544  677788888888887779999998764

>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9

Probab=89.49  E-value=0.69  Score=46.88  Aligned_cols=108  Identities=12%  Similarity=0.046  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccc--cc---cccC
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMS--HL---RATS  275 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~--~~---~q~~  275 (361)
                      -+|.|.+.+.          + -.++++..|=|..+.   .-.+..|...++|+|+|+-+-.... +..  ..   ....
T Consensus        57 ~~A~Gyar~t----------g-~~v~~~tsGpG~~N~---~~gv~~A~~~~~Pll~itg~~p~~~~~~~~~~~~~~g~~~  122 (552)
T 1ovm_A           57 YAADGYARCK----------G-FAALLTTFGVGELSA---MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGE  122 (552)
T ss_dssp             HHHHHHHHHH----------S-CEEEEEETTHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSC
T ss_pred             HHHHHHHHhh----------C-CcEEEEccCCcHHHH---HHHHHHHhhhcCCEEEEECCCCHHHHhcccccccccCCCc
Confidence            4577777762          3 235556667776552   5678899999999999988654221 100  00   0001


Q ss_pred             CcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          276 DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       276 ~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      ..+..++.+.+-...+.|.. +  ++...+++|+..+....||+.|++-.+
T Consensus       123 ~q~~~~~~~~~tk~~~~v~~-~--~~~~~i~~A~~~a~~~~GPV~l~iP~d  170 (552)
T 1ovm_A          123 FRHFYHMSEPITVAQAVLTE-Q--NACYEIDRVLTTMLRERRPGYLMLPAD  170 (552)
T ss_dssp             CSHHHHHTGGGCSEEEECCT-T--THHHHHHHHHHHHHHHTCCEEEEEEHH
T ss_pred             HHHHHHHHHhheeEEEEEcc-c--cHHHHHHHHHHHHHhCCCCEEEEeehh
Confidence            12455677777777777865 3  666778888888877679999999764

>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*

Probab=88.84  E-value=1.3  Score=46.29  Aligned_cols=102  Identities=18%  Similarity=0.077  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      +.+|.|+|+.           +.-+++++.+...+..   ..+.+..++..++||++++.+.+++.+..-....+..|++
T Consensus       415 v~~a~GlA~~-----------gG~~P~~~tf~~F~~~---~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tHq~~edla  480 (669)
T 2r8o_A          415 TAIANGISLH-----------GGFLPYTSTFLMFVEY---ARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVA  480 (669)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGGGGGT---THHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             HHHHHHHHHc-----------CCCeEEEeehHHHHHH---HHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCccCCHHHHH
Confidence            3567777765           4446666666554332   2566888999999999998887765442211111223333


Q ss_pred             hccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048          281 KKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       281 ~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~-~gP~lIev  323 (361)
                      -+.   .+|+.+| .-.|..++...++.|    .+. ++|++|-.
T Consensus       481 ~lr---~iP~l~V~~Pad~~E~~~~l~~a----~~~~~~Pv~i~~  518 (669)
T 2r8o_A          481 SLR---VTPNMSTWRPCDQVESAVAWKYG----VERQDGPTALIL  518 (669)
T ss_dssp             HHH---TSTTCEEECCSSHHHHHHHHHHH----HHCSSSCEEEEC
T ss_pred             Hhc---CCCCCEEEecCCHHHHHHHHHHH----HHhCCCcEEEEe
Confidence            332   3555544 345666665555544    444 78999843

>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*

Probab=88.82  E-value=0.9  Score=47.17  Aligned_cols=101  Identities=18%  Similarity=0.121  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      .+|+|+|++           +..+++++.++++.. ..  ++.+.+++..++|+++++.+-+++.+.....+.+..|++-
T Consensus       369 ~~a~G~A~~-----------G~~~~~~~~f~~Fl~-~a--~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH~~~ed~a~  434 (616)
T 3mos_A          369 SIAVGCATR-----------NRTVPFCSTFAAFFT-RA--FDQIRMAAISESNINLCGSHCGVSIGEDGPSQMALEDLAM  434 (616)
T ss_dssp             HHHHHHHGG-----------GCCEEEEEEEGGGGG-GG--HHHHHHHHHTTCCEEEEEESBSGGGCTTCGGGCBSSHHHH
T ss_pred             HHHHHHHHc-----------CCCCEEEEehHHHHH-HH--HHHHHHHHHhCCCeEEEEECCCccccCCCCcccCHHHHHH
Confidence            455666655           333567778998864 33  7788888899999998877666544432112222333333


Q ss_pred             ccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          282 KGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       282 ~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      +.   .+|++.|- -.|+.++..    +++.+.+.++|++|..
T Consensus       435 l~---~iP~l~V~~P~d~~e~~~----~l~~a~~~~gp~~ir~  470 (616)
T 3mos_A          435 FR---SVPTSTVFYPSDGVATEK----AVELAANTKGICFIRT  470 (616)
T ss_dssp             HH---TSTTEEEECCCSHHHHHH----HHHHHHTCCSEEEEEC
T ss_pred             hc---CCCCCEEEecCCHHHHHH----HHHHHHhcCCCEEEEE
Confidence            32   46777553 446666554    4455556689987743

>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}

Probab=88.04  E-value=1.3  Score=45.94  Aligned_cols=100  Identities=17%  Similarity=0.261  Sum_probs=59.2

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccc--ccccccCCcc
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDPQ  278 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~--~~~~q~~~~d  278 (361)
                      +.+|+|+|++            .-++++.++++..  +-.+-|-++.++..++||++++.+.++ .+.  +++.  ...|
T Consensus       374 ~~~a~G~A~~------------G~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~~G~tH~--~~~d  436 (621)
T 2o1s_A          374 VTFAAGLAIG------------GYKPIVAIYSTFL--QRAYDQVLHDVAIQKLPVLFAIDRAGI-VGADGQTHQ--GAFD  436 (621)
T ss_dssp             HHHHHHHHHT------------TCEEEEEEETTGG--GGGHHHHHHTTTTTTCCCEEEEESCBC-CCTTCGGGC--BCSH
T ss_pred             HHHHHHHHHC------------CCEEEEEehHhHH--HHHHHHHHHHHHhcCCCEEEEEECCcc-CCCCCCccC--chHH
Confidence            4467777765            3577888888864  322234577789999999999977663 221  2221  2234


Q ss_pred             hhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       279 ~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      +.-+.   .+|++.| .-.|+.+++..++.|++.   .++|++|-.
T Consensus       437 ~~~~~---~iP~l~v~~P~d~~e~~~~l~~a~~~---~~~Pv~i~~  476 (621)
T 2o1s_A          437 LSYLR---CIPEMVIMTPSDENECRQMLYTGYHY---NDGPSAVRY  476 (621)
T ss_dssp             HHHTT---TSTTCEEECCSSHHHHHHHHHHHHHC---CSSCEEEEC
T ss_pred             HHHHh---cCCCCEEEecCCHHHHHHHHHHHHHc---CCCCEEEEe
Confidence            33332   3444433 345666766666655532   278998855

>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}

Probab=87.42  E-value=1.6  Score=45.44  Aligned_cols=102  Identities=21%  Similarity=0.182  Sum_probs=59.8

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      +.+|.|+|+.           +.-++++..+.=.+.   ...+.+..++..++||++++.+.+++.+..-.......|++
T Consensus       410 ~~~a~GlA~~-----------Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla  475 (651)
T 2e6k_A          410 GAILNGLNLH-----------GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTHQPVEHLM  475 (651)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             HHHHHHHHHc-----------CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCccccHHHHH
Confidence            3467787776           435677776633222   12566888999999999998888766542211111223333


Q ss_pred             hccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048          281 KKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       281 ~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~-~gP~lIev  323 (361)
                      -+.   .+|+..| .-.|..++...++.|+    +. ++|++|-.
T Consensus       476 ~lr---~iP~l~V~~Pad~~E~~~~l~~A~----~~~~~Pv~i~~  513 (651)
T 2e6k_A          476 SLR---AMPNLFVIRPADAYETFYAWLVAL----RRKEGPTALVL  513 (651)
T ss_dssp             HHH---TSTTCEEECCSSHHHHHHHHHHHH----HCCSSCEEEEC
T ss_pred             Hhc---CCCCcEEEecCCHHHHHHHHHHHH----HcCCCCEEEEE
Confidence            322   3555544 3456666655555554    43 68998865

>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*

Probab=87.30  E-value=2.4  Score=42.96  Aligned_cols=106  Identities=12%  Similarity=0.054  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-ccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~~~~~q~~~~d~~  280 (361)
                      =+|.|.+.+.          +.-.++++..|=|+.+.   .-.+..|...++|+|+|.-+-.... +.   ......|..
T Consensus        60 ~~AdGyAr~t----------G~pgv~~~TsGpG~~N~---~~gia~A~~d~vPll~itG~~~~~~~g~---~~~Q~~d~~  123 (556)
T 3hww_A           60 HLALGLAKVS----------KQPVAVIVTSGTAVANL---YPALIEAGLTGEKLILLTADRPPELIDC---GANQAIRQP  123 (556)
T ss_dssp             HHHHHHHHHH----------CSCEEEEECSSHHHHTT---HHHHHHHHHHCCCEEEEEEECCGGGSSS---SCTTCCCCT
T ss_pred             HHHHHHHHhh----------CCCEEEEECCCcHHHhh---hHHHHHHHHhCCCeEEEeCCCCHHHhcc---CCCccccHH
Confidence            3466766662          23345555567777763   5679999999999999987654221 11   111224556


Q ss_pred             hccccCCccEEEEeCCC----HHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          281 KKGPAFGMPGFHVDGMD----VLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D----~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      .+.+.+--..+.|...+    ..++.+++++|+.  ....||+.|++-.
T Consensus       124 ~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~--~~r~GPV~i~iP~  170 (556)
T 3hww_A          124 GMFASHPTHSISLPRPTQDIPARWLVSTIDHALG--TLHAGGVHINCPF  170 (556)
T ss_dssp             TTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHH--SCCSSCEEEEEEC
T ss_pred             HHHhhheeEEEecCCCcccccHHHHHHHHHHHHh--cCCCCCEEEeCCc
Confidence            66666655566665443    2345566666662  1235899999975

>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}

Probab=87.17  E-value=1.4  Score=46.15  Aligned_cols=101  Identities=16%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      +.+|.|+|+.           +.-++++.++.+-...   ..+.+..++..++||+++....+++.+..-....+..|++
T Consensus       416 v~~a~GlA~~-----------gG~~P~~~tf~~F~~~---~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~THq~~ed~a  481 (663)
T 3kom_A          416 AAIMNGLSLY-----------GGIKPYGGTFLVFSDY---SRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTHQPIEHVP  481 (663)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGGGHHH---HHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             HHHHHHHHHc-----------CCCEEEEEehHHHHHH---HHHHHHHHHhcCCCEEEEEeCCccccCCCCCCcCCHHHHH
Confidence            3567777765           4566777776554321   2566777889999999998877755543221222233433


Q ss_pred             hccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHc-CCCCEEEE
Q 018048          281 KKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARR-GEGPTLVE  322 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~-~~gP~lIe  322 (361)
                      -+.   .+|+++|= -.|..++..    +++.+.+ .++|++|-
T Consensus       482 ~lr---~iPnl~V~~Pad~~e~~~----~l~~A~~~~~~Pv~ir  518 (663)
T 3kom_A          482 SLR---LIPNLSVWRPADTIETMI----AWKEAVKSKDTPSVMV  518 (663)
T ss_dssp             HHH---TSTTCEEECCCSHHHHHH----HHHHHHHCSSCCEEEE
T ss_pred             HHh---cCCCcEEEeeCCHHHHHH----HHHHHHHhCCCCEEEE
Confidence            332   46666543 346555544    4445555 68999984

>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*

Probab=85.85  E-value=1.5  Score=46.03  Aligned_cols=101  Identities=13%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCc-eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDH-VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~-~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      .+|.|+|+.           +.-+ +++..+.+-+.   .....+..++..++||++++...+++.+..-....+..|++
T Consensus       423 g~a~GlA~~-----------Gg~~~P~~~~f~~F~~---~~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tHq~~edla  488 (680)
T 1gpu_A          423 AIMNGISAF-----------GANYKPYGGTFLNFVS---YAAGAVRLSALSGHPVIWVATHDSIGVGEDGPTHQPIETLA  488 (680)
T ss_dssp             HHHHHHHHH-----------CTTCEEEEEEEHHHHG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             HHHHHHHhc-----------CCCceEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCccCCHHHHH
Confidence            467777776           4345 66665533221   12566888899999999998877755542211111223333


Q ss_pred             hccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048          281 KKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~-~gP~lIev  323 (361)
                      -+   -.+|+++|= -.|..++...++.    +.+. ++|++|-.
T Consensus       489 ~l---r~iP~l~V~~Pad~~e~~~~l~~----A~~~~~~Pv~i~~  526 (680)
T 1gpu_A          489 HF---RSLPNIQVWRPADGNEVSAAYKN----SLESKHTPSIIAL  526 (680)
T ss_dssp             HH---HTSSSCEEECCCSHHHHHHHHHH----HHHCSSCCEEEEC
T ss_pred             Hh---cCCCCCEEEecCCHHHHHHHHHH----HHHhCCCcEEEEe
Confidence            32   245666553 3466665554544    4444 79999843

>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*

Probab=85.14  E-value=1.6  Score=45.39  Aligned_cols=102  Identities=16%  Similarity=0.049  Sum_probs=60.3

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      +.+|.|+|+.           +.-++++.++.+  |.+ ...+.+..++..++||+++....+++.+..-....+..|++
T Consensus       395 v~~a~GlA~~-----------gG~~P~~~~f~~--F~~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~THq~~ed~a  460 (632)
T 3l84_A          395 AAINNAFARY-----------GIFLPFSATFFI--FSE-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLS  460 (632)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGSCSSHHH
T ss_pred             HHHHHHHHHc-----------CCCEEEEEecHH--HHH-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCCCCHhHHH
Confidence            3566777765           445677776654  332 22566777889999999998877765543222222333433


Q ss_pred             hccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          281 KKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      -+.   .+|+++|= -.|..++...++.|    .+.++|++|-.
T Consensus       461 ~lr---~iP~l~V~~P~d~~e~~~~l~~A----~~~~~Pv~ir~  497 (632)
T 3l84_A          461 TFR---AMPNFLTFRPADGVENVKAWQIA----LNADIPSAFVL  497 (632)
T ss_dssp             HHH---HSSSCEEECCSSHHHHHHHHHHH----HHCSSCEEEEC
T ss_pred             HHh---cCCCCEEEecCCHHHHHHHHHHH----HhCCCCEEEEE
Confidence            332   45666543 34666655555554    44789998854

>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}

Probab=84.14  E-value=1.4  Score=45.68  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=58.2

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccc--ccccccCCcc
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM--SHLRATSDPQ  278 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~--~~~~q~~~~d  278 (361)
                      +.+|+|+|++            .-++++.++.+..  +-.+-|-++.++..++||++++.+.++ .+.  +++.  ...|
T Consensus       377 ~~~a~G~A~~------------G~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~-~g~dG~tH~--~~~d  439 (629)
T 2o1x_A          377 VTTAAGMALQ------------GMRPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGI-VGADGATHN--GVFD  439 (629)
T ss_dssp             HHHHHHHHHT------------TCEEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBC-CCTTCTTTC--BCSH
T ss_pred             HHHHHHHHHc------------CCEEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCcc-CCCCCcccC--ccHH
Confidence            3467777775            3567777777643  322235577789999999999976653 221  1111  1234


Q ss_pred             hhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          279 IYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       279 ~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      ++-+.   .+|+..| .-.|+.+++..++.|++    .++|++|-.
T Consensus       440 ~a~~r---~iP~l~v~~P~d~~e~~~~~~~a~~----~~~Pv~i~~  478 (629)
T 2o1x_A          440 LSFLR---SIPGVRIGLPKDAAELRGMLKYAQT----HDGPFAIRY  478 (629)
T ss_dssp             HHHTT---TSTTCEEECCSSHHHHHHHHHHHHH----SSSCEEEEC
T ss_pred             HHHHH---ccCCcEEEecCCHHHHHHHHHHHHh----CCCCEEEEe
Confidence            33332   3444433 34576776666666554    478999865

>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=83.22  E-value=1.8  Score=45.38  Aligned_cols=101  Identities=15%  Similarity=0.102  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcC-CCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          202 PVATGAAFTSKYRREVLKEAD-CDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~-~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      .+|.|+|+.           + .-++++.++.+.+.   ...+.+..++..++||++++...+++.+..-....+..|++
T Consensus       428 ~~a~GlA~~-----------G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tHq~~edla  493 (675)
T 1itz_A          428 AICNGIALH-----------SPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTHQPIEHLV  493 (675)
T ss_dssp             HHHHHHHTT-----------CTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHH
T ss_pred             HHHHHHHhc-----------CCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCcCcHHHHH
Confidence            466676665           3 25677777655432   22566888999999999999877655442211111223333


Q ss_pred             hccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048          281 KKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       281 ~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~-~gP~lIev  323 (361)
                      -+   -.+|+++| .-.|..++...++.    +.+. ++|++|-.
T Consensus       494 ~l---r~iP~l~V~~Pad~~e~~~~l~~----a~~~~~~Pv~i~~  531 (675)
T 1itz_A          494 SF---RAMPNILMLRPADGNETAGAYKV----AVLNRKRPSILAL  531 (675)
T ss_dssp             HH---HSSSSCEEECCCSHHHHHHHHHH----HHHCTTSCEEEEE
T ss_pred             Hh---ccCCCeEEEECCCHHHHHHHHHH----HHHhCCCcEEEEe
Confidence            32   24666655 34566665555544    4444 78999854

>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1

Probab=83.06  E-value=3.2  Score=43.44  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhh
Q 018048          202 PVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYK  281 (361)
Q Consensus       202 P~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~  281 (361)
                      .+|.|+|+.           +.-++++.++..-+.   .....+..++..++||++++...+++.+..-....+..+++-
T Consensus       416 ~~a~GlA~~-----------GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tHq~~edla~  481 (673)
T 1r9j_A          416 AILNGLDAH-----------DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTHQPVELVAA  481 (673)
T ss_dssp             HHHHHHHHH-----------SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTTCCSSHHHH
T ss_pred             HHHHHHHhc-----------CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCcccCCHHHHHH
Confidence            356776665           334667776644332   225668889999999999987777655422111112233333


Q ss_pred             ccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048          282 KGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       282 ~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~-~gP~lIev  323 (361)
                      +.   .+|+++| .-.|..++...++.|    .+. ++|++|-.
T Consensus       482 lr---~iP~l~V~~Pad~~e~~~~l~~a----~~~~~~Pv~i~~  518 (673)
T 1r9j_A          482 LR---AMPNLQVIRPSDQTETSGAWAVA----LSSIHTPTVLCL  518 (673)
T ss_dssp             HH---HSTTCEEECCSSHHHHHHHHHHH----HHCTTCCEEEEC
T ss_pred             Hc---CCCCCEEEeCCCHHHHHHHHHHH----HHhCCCeEEEEE
Confidence            22   3565554 345666655555544    443 78999853

>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*

Probab=82.82  E-value=3.5  Score=43.38  Aligned_cols=102  Identities=20%  Similarity=0.145  Sum_probs=57.4

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      +.+|.|+|+.           +.-++++..+.-  |.. ....++.+++..++||+|++...+++.+..-....+..|++
T Consensus       440 v~~A~GlA~~-----------gG~~P~~~tf~~--Fs~-f~~~air~~al~~lpVv~v~~~~gigvG~dG~THq~ied~a  505 (690)
T 3m49_A          440 GAAMNGIALH-----------GGLKTYGGTFFV--FSD-YLRPAIRLAALMQLPVTYVFTHDSIAVGEDGPTHEPIEQLA  505 (690)
T ss_dssp             HHHHHHHHHH-----------SSCEEEEEEEGG--GGG-GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGGCCSSHHH
T ss_pred             HHHHHHHHHc-----------CCCEEEEEecHH--HHH-HHHHHHHHHHhcCCCcEEEEECCCcCCCCCCCccCCHHHHH
Confidence            3566777765           345666654422  121 01345677889999999999887755543222222333443


Q ss_pred             hccccCCccEEEEe-CCCHHHHHHHHHHHHHHHHcC-CCCEEEEE
Q 018048          281 KKGPAFGMPGFHVD-GMDVLKVREVAKEAIERARRG-EGPTLVEC  323 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar~~-~gP~lIev  323 (361)
                      -+.   .+|+++|= -.|..++..    +++.+.+. ++|++|-.
T Consensus       506 ~lr---~iPnl~V~~Pad~~E~~~----~l~~Ai~~~~~Pv~ir~  543 (690)
T 3m49_A          506 ALR---AMPNVSVIRPADGNESVA----AWRLALESTNKPTALVL  543 (690)
T ss_dssp             HHH---TSTTCEEECCSSHHHHHH----HHHHHHHCSSSCEEEEC
T ss_pred             HHh---cCCCCEEEeeCCHHHHHH----HHHHHHHcCCCCEEEEe
Confidence            332   46666543 346556544    44445554 78999843

>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B

Probab=81.23  E-value=2.4  Score=40.50  Aligned_cols=98  Identities=21%  Similarity=0.123  Sum_probs=54.9

Q ss_pred             ccHHHHHHHHHHHHHHhhhhhcCCCceEEEE-ECCCcccCcchHHHHHHh-h--------hCCCCeEEEEEcCCccc-cc
Q 018048          200 GIPVATGAAFTSKYRREVLKEADCDHVTLAF-FGDGTCNNGQFFECLNMA-A--------LWKLPIVFVVENNLWAI-GM  268 (361)
Q Consensus       200 ~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~-~GDGs~~~g~~~eeL~tA-~--------~~~LPvi~VV~NN~y~i-s~  268 (361)
                      .+..|.|+|++            .-++++.+ ++|.. +..  ++.+-.. +        ..++||++++.+ ++.- ..
T Consensus        74 ~v~~a~G~A~~------------G~rp~~~~~f~~F~-~~a--~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G  137 (341)
T 2ozl_B           74 FAGIAVGAAMA------------GLRPICEFMTFNFS-MQA--IDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVA  137 (341)
T ss_dssp             HHHHHHHHHHT------------TCEEEEECSSGGGG-GGG--HHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCC
T ss_pred             HHHHHHHHHHC------------CCEEEEEeccHHHH-HHH--HHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCC
Confidence            34567777775            24555553 88876 332  5555543 3        389999999885 6211 11


Q ss_pred             ccccccCCcchhhccccCCccEEEE-eCCCHHHHHHHHHHHHHHHHcCCCCEEEEE
Q 018048          269 SHLRATSDPQIYKKGPAFGMPGFHV-DGMDVLKVREVAKEAIERARRGEGPTLVEC  323 (361)
Q Consensus       269 ~~~~q~~~~d~~~~A~a~Gi~~~~V-dg~D~~~v~~al~~Al~~ar~~~gP~lIev  323 (361)
                      +++.|  ..+  .+.+  .+|+..| .-.|+.+++..++.|+    +.++|++|-.
T Consensus       138 ~tHs~--~~e--a~l~--~iP~l~V~~Psd~~e~~~~l~~a~----~~~~Pv~i~~  183 (341)
T 2ozl_B          138 AQHSQ--CFA--AWYG--HCPGLKVVSPWNSEDAKGLIKSAI----RDNNPVVVLE  183 (341)
T ss_dssp             GGGCC--CCH--HHHH--TSTTCEEECCCSHHHHHHHHHHHH----HSSSCEEEEE
T ss_pred             cchhh--HHH--HHhc--cCCCCEEEEeCCHHHHHHHHHHHH----hcCCCEEEEE
Confidence            22212  223  2222  3455433 3457777766666655    4578998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d2ozla1	361	c.36.1.11 (A:1-361) E1-beta subunit of pyruvate de	1e-53
d1qs0a_	407	c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B	2e-48
d1umda_	362	c.36.1.11 (A:) Branched-chain alpha-keto acid dehy	4e-48
d1w85a_	365	c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, Pd	5e-45
d2bfda1	395	c.36.1.11 (A:6-400) Branched-chain alpha-keto acid	1e-43
d1q6za3	183	c.36.1.9 (A:342-524) Benzoylformate decarboxylase	1e-06
d2ieaa2	415	c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 com	1e-05
d1ybha3	208	c.36.1.9 (A:460-667) Acetohydroxyacid synthase cat	0.002
d1ovma3	196	c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxyla	0.004

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]} Length = 361

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  178 bits (453), Expect = 1e-53
 Identities = 96/263 (36%), Positives = 137/263 (52%), Gaps = 11/263 (4%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           +T+++GL+ Y  M   R  E    Q+Y +  + GF HL +GQEA   G    +   D ++
Sbjct: 27  LTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLI 86

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
           + YR H    ++G+  R +++EL G+  GC +  G    M     N  GG   +G  +P+
Sbjct: 87  TAYRAHGFTFTRGLSVREILAELTGRKGGCAK--GKGGSMHMYAKNFYGGNGIVGAQVPL 144

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
             G A   KY  +       D V L  +GDG  N GQ FE  NMAALWKLP +F+ ENN 
Sbjct: 145 GAGIALACKYNGK-------DEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR 197

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           + +G S  RA +    YK      +PG  VDGMD+L VRE  + A    R G+GP L+E 
Sbjct: 198 YGMGTSVERAAASTDYYK--RGDFIPGLRVDGMDILCVREATRFAAAYCRSGKGPILMEL 255

Query: 324 ETYRFRGHSLADPDELRDPGEHL 346
           +TYR+ GH ++DP       E +
Sbjct: 256 QTYRYHGHEMSDPGVSYRTREEI 278

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]} Length = 407

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

 Score =  166 bits (420), Expect = 2e-48
 Identities = 65/264 (24%), Positives = 102/264 (38%), Gaps = 9/264 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           I  Q   +    M+  R F+        + KM  F     G+EA+ +G    L + D   
Sbjct: 71  IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALALNRTDMCF 129

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
            TYR     +++ V    ++ +L        +G+   +    +E         +      
Sbjct: 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQ 189

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A  S  +           +  A+ GDG      F   L  A +++ P++  V NN 
Sbjct: 190 AVGWAMASAIKG-------DTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQ 242

Query: 264 WAIGMSHLRATSDPQI-YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
           WAI      A  +      +G   G+    VDG D + V   ++ A ERARRG GP+L+E
Sbjct: 243 WAISTFQAIAGGESTTFAGRGVGCGIASLRVDGNDFVAVYAASRWAAERARRGLGPSLIE 302

Query: 323 CETYRFRGHSLADPDELRDPGEHL 346
             TYR   HS +D      P +  
Sbjct: 303 WVTYRAGPHSTSDDPSKYRPADDW 326

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]} Length = 362

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

 Score =  164 bits (415), Expect = 4e-48
 Identities = 92/263 (34%), Positives = 129/263 (49%), Gaps = 9/263 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSV 142
           +  ++   LY DM+  R  ++    +   GK   F+    G EA        ++   D V
Sbjct: 28  LEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWV 86

Query: 143 VSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIP 202
              YRDH  AL+ G+P + ++ ++        +G+    H  SK  N     + I   +P
Sbjct: 87  FPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVP 146

Query: 203 VATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENN 262
            A GAA + K  R          V +  FGDG  + G ++  +N AA+   P VF+ ENN
Sbjct: 147 PAAGAAISMKLLRT-------GQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENN 199

Query: 263 LWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
            +AI + +   T  P I  K  AFG+PG+ VDGMDVL    V KEA+ERARRGEGP+LVE
Sbjct: 200 FYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVVKEAVERARRGEGPSLVE 259

Query: 323 CETYRFRGHSLADPDELRDPGEH 345
              YR+  HS AD D    P E 
Sbjct: 260 LRVYRYGPHSSADDDSRYRPKEE 282

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]} Length = 365

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  156 bits (395), Expect = 5e-45
 Identities = 77/264 (29%), Positives = 112/264 (42%), Gaps = 18/264 (6%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           ++ ++  EL   M+  R  +     +  +G++ GF     GQEA        L+KED ++
Sbjct: 38  LSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDFIL 96

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
             YRD    +  G+P         G             +   +  N+L     IG     
Sbjct: 97  PGYRDVPQIIWHGLPLYQAFLFSRGH---------FHGNQIPEGVNVLPPQIIIGAQYIQ 147

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A G A   K R           V + + GDG  + G F+E +N A  +K P +FVV+NN 
Sbjct: 148 AAGVALGLKMRG-------KKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNR 200

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI     + T    + +K  A G+PG  VDGMD L V    K A ERA  GEGPTL+E 
Sbjct: 201 FAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAVYAAVKAARERAINGEGPTLIET 260

Query: 324 ETYRFRGHS-LADPDELRDPGEHL 346
             +R+  H+   D        E  
Sbjct: 261 LCFRYGPHTMSGDDPTRYRSKELE 284

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]} Length = 395

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  153 bits (387), Expect = 1e-43
 Identities = 69/263 (26%), Positives = 113/263 (42%), Gaps = 9/263 (3%)

Query: 84  ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVV 143
           + K++ L+LY+ M L  + + +  +   +G++  ++  Y G+E    G    L   D V 
Sbjct: 47  LPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNY-GEEGTHVGSAAALDNTDLVF 105

Query: 144 STYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPV 203
              R+    + +  P    M++ +G  +   +G+   +H   KE + +   + +   IP 
Sbjct: 106 GQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQ 165

Query: 204 ATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL 263
           A GAA+ +K           + V + +FG+G  + G      N AA  + PI+F   NN 
Sbjct: 166 AVGAAYAAKRAN-------ANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNG 218

Query: 264 WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVEC 323
           +AI            I  +GP +G+    VDG DV  V    KEA  RA     P L+E 
Sbjct: 219 YAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEA 278

Query: 324 ETYRFRGHSLADPDEL-RDPGEH 345
            TYR    S +D     R   E 
Sbjct: 279 MTYRIGHASTSDDSSAFRSVDEV 301

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Length = 183

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 19/116 (16%), Positives = 35/116 (30%), Gaps = 17/116 (14%)

Query: 221 ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHL--------- 271
              +         G  +       L  AA + +P +FV+ NN     +            
Sbjct: 73  QLAEPERQVIAVIGDGSANYSISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENV 132

Query: 272 --RATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECET 325
                           +G+     D ++ LK       +++ A   +GP L+E  T
Sbjct: 133 PGLDVPGIDFRALAKGYGVQALKADNLEQLK------GSLQEALSAKGPVLIEVST 182

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]} Length = 415

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 29/198 (14%), Positives = 55/198 (27%), Gaps = 14/198 (7%)

Query: 148 DHVHALSKGVPARAVMSELFG--------KATGCCRGQGGSMHMFSKEHNLLGGFAFIGE 199
           D V+      P     + L G               G G S +   K             
Sbjct: 80  DLVYFQGHISPGVYARAFLEGRLTQEQLDNFRQEVHGNGLSSYPHPKLM-PEFWQFPTVS 138

Query: 200 GIPVATGAAFTSKYRREVLKEADC---DHVTLAFFGDGTCNNGQFFECLNMAALWKL-PI 255
                 GA + +K+ + +              AF GDG  +  +    + +A   KL  +
Sbjct: 139 MGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNL 198

Query: 256 VFVVENNLWAI-GMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR 314
           VFV+  NL  + G          ++       G     V              + +  + 
Sbjct: 199 VFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQL 258

Query: 315 GEGPTLVECETYRFRGHS 332
                  + +T++ +  +
Sbjct: 259 MNETVDGDYQTFKSKDGA 276

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Length = 208

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 35/197 (17%), Positives = 60/197 (30%), Gaps = 44/197 (22%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLG--GFAFIGEGIPVATGA 207
           +  L +    +A++S       G  +      + + K    L   G   +G G+P A GA
Sbjct: 9   IKVLDELTDGKAIIST----GVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGA 64

Query: 208 AFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-- 265
           +  +     V              GDG+       + L    +  LP+  ++ NN     
Sbjct: 65  SVANPDAIVV-----------DIDGDGSFI--MNVQELATIRVENLPVKVLLLNNQHLGM 111

Query: 266 -----------------IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEA 308
                            +G         P +     A G+P   V     L+      EA
Sbjct: 112 VMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAAACGIPAARVTKKADLR------EA 165

Query: 309 IERARRGEGPTLVECET 325
           I+      GP L++   
Sbjct: 166 IQTMLDTPGPYLLDVIC 182

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 21/181 (11%), Positives = 50/181 (27%), Gaps = 25/181 (13%)

Query: 150 VHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLL-GGFAFIGEGIPVATGAA 208
              L   +    ++        G        + + +  + ++   +  IG  +  A GA 
Sbjct: 11  WRTLQTFIRPGDIILA----DQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQ 66

Query: 209 FTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGM 268
                         C +  +              E  +M    + PI+ V+ N  + +  
Sbjct: 67  TA------------CPNRRVIVLTGDGAAQLTIQELGSMLRDKQHPIILVLNNEGYTVER 114

Query: 269 SHLRATS------DPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVE 322
           +   A                 A  +         V +  ++  + +E+    E  +L+E
Sbjct: 115 AIHGAEQRYNDIALWNWTHIPQALSLDPQSE-CWRVSEAEQL-ADVLEKVAHHERLSLIE 172

Query: 323 C 323
            
Sbjct: 173 V 173

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1qs0a_	407	2-oxoisovalerate dehydrogenase (E1B), PP module {P	100.0
d2bfda1	395	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d1umda_	362	Branched-chain alpha-keto acid dehydrogenase, PP m	100.0
d2ozla1	361	E1-beta subunit of pyruvate dehydrogenase (PP modu	100.0
d1w85a_	365	Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus st	100.0
d2djia3	229	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	99.93
d2ez9a3	228	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	99.93
d1ybha3	208	Acetohydroxyacid synthase catalytic subunit {Thale	99.93
d2ihta3	198	Carboxyethylarginine synthase {Streptomyces clavul	99.91
d1t9ba3	227	Acetohydroxyacid synthase catalytic subunit {Baker	99.91
d1q6za3	183	Benzoylformate decarboxylase {Pseudomonas putida [	99.9
d1ozha3	192	Catabolic acetolactate synthase {Klebsiella pneumo	99.9
d1ovma3	196	Indole-3-pyruvate decarboxylase {Enterobacter cloa	99.88
d1zpda3	204	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	99.88
d1pvda3	196	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	99.87
d2ji7a3	183	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	99.87
d2r8oa2	331	Transketolase (TK), PP module {Escherichia coli [T	99.71
d1r9ja2	336	Transketolase (TK), PP module {Leishmania mexicana	99.69
d1gpua1	335	Transketolase (TK), PP module {Baker's yeast (Sacc	99.64
d1itza1	338	Transketolase (TK), PP module {Maize (Zea mays) [T	99.6
d2ieaa2	415	Pyruvate dehydrogenase E1 component, PP module {Es	99.51
d2c42a2	447	Pyruvate-ferredoxin oxidoreductase, PFOR, domains	98.31
d2ihta2	186	Carboxyethylarginine synthase {Streptomyces clavul	96.53
d1zpda2	186	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	96.51
d2djia2	184	Pyruvate oxidase {Aerococcus viridans [TaxId: 1377	96.48
d2ez9a2	174	Pyruvate oxidase {Lactobacillus plantarum [TaxId:	96.41
d1ozha2	181	Catabolic acetolactate synthase {Klebsiella pneumo	96.25
d1t9ba2	175	Acetohydroxyacid synthase catalytic subunit {Baker	96.06
d2ji7a2	188	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	96.03
d1pvda2	180	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	95.97
d1q6za2	180	Benzoylformate decarboxylase {Pseudomonas putida [	95.95
d1ybha2	195	Acetohydroxyacid synthase catalytic subunit {Thale	95.7
d1ovma2	178	Indole-3-pyruvate decarboxylase {Enterobacter cloa	92.87
d2c42a1	257	Pyruvate-ferredoxin oxidoreductase, PFOR, domain I	91.2
d1r9ja1	190	Transketolase (TK), Pyr module {Leishmania mexican	81.99

>d1qs0a_ c.36.1.11 (A:) 2-oxoisovalerate dehydrogenase (E1B), PP module {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: 2-oxoisovalerate dehydrogenase (E1B), PP module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.7e-66  Score=515.66  Aligned_cols=290  Identities=24%  Similarity=0.311  Sum_probs=275.7

Q ss_pred             CCcccccchhHHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhc
Q 018048           57 NVRRRLPVVAVSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLL  136 (361)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l  136 (361)
                      ..-+..||.+|+++|+++..++.+.++|++|+++++||.|+++|.||+++..+++|||+ ||||++.||||+++|++.+|
T Consensus        44 ~~~~~~~~~~vrvld~~g~~~~~~~~~l~~e~l~~~yr~M~~~R~~d~~~~~l~rqG~i-~~~~~~~GqEA~~vg~~~aL  122 (407)
T d1qs0a_          44 ADTADLSYSLVRVLDEQGDAQGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKM-SFYMQSLGEEAIGSGQALAL  122 (407)
T ss_dssp             GGGHHHHTSCBCCBCTTSCBCSGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-SCCCCCTTTHHHHHHHHHHS
T ss_pred             hhccccccCeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCCCCChHHHHHHHHHhC
Confidence            34567799999999999999988999999999999999999999999999999999999 88999999999999999999


Q ss_pred             CCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHh
Q 018048          137 KKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRRE  216 (361)
Q Consensus       137 ~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~  216 (361)
                      +++||+|++||+|++.|++|+++.++|.+++++..|++.|++|++|+..+..++.+.++++|.++|.|+|+|+|.|++  
T Consensus       123 ~~~D~~f~~yR~~g~~larG~~~~~~~~e~~g~~~g~~~Gr~~~~h~~~~~~~~~~~s~~vg~q~p~AvG~A~a~k~~--  200 (407)
T d1qs0a_         123 NRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIK--  200 (407)
T ss_dssp             CTTSEEECCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHT--
T ss_pred             CCCCEEEecccCHHHHHHHHhhHHHHHHHHhhccCCCCCCCCccccccccccceeccccccccccchhhhhHHHHhhc--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             hhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccC-CcchhhccccCCccEEEEeC
Q 018048          217 VLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATS-DPQIYKKGPAFGMPGFHVDG  295 (361)
Q Consensus       217 ~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~-~~d~~~~A~a~Gi~~~~Vdg  295 (361)
                           +.+++|||++|||++++|.|+|+||+|+.|+|||||||+||+|+++++...+.. ..++++++.+||+++++|||
T Consensus       201 -----~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~ra~~~Gi~~~~VDG  275 (407)
T d1qs0a_         201 -----GDTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRVDG  275 (407)
T ss_dssp             -----TCCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEEET
T ss_pred             -----cCcceecccccccccccchHHHHHHHHhccCcceEEEEEEecccccccchhhhccchhHHHHHHhcCcceEEecc
Confidence                 578999999999999999999999999999999999999999999998766554 56799999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-CCCCCCCHHHHHhHHHhhhc
Q 018048          296 MDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRDPGEHLVLVLFIFC  354 (361)
Q Consensus       296 ~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-Dp~~yR~~~e~~~~~~~~~~  354 (361)
                      +|+++|++++++|++++|+++||+|||++|||..||+++ |++.||+++|++.|...++.
T Consensus       276 nD~~avy~a~~~A~e~aR~g~gP~lIE~~TyR~~gHs~sDD~~~YR~~~E~~~w~~~DPI  335 (407)
T d1qs0a_         276 NDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPLGDPI  335 (407)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTTCCHH
T ss_pred             ccHHHHHHHHHHHHHHHhcCCCceEEEEeeecCCCCCccccccccCCHHHHHHHHhCCHH
Confidence            999999999999999999999999999999999999998 57899999999999876554

>d2bfda1 c.36.1.11 (A:6-400) Branched-chain alpha-keto acid dehydrogenase, PP module {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-66  Score=510.64  Aligned_cols=306  Identities=23%  Similarity=0.343  Sum_probs=268.6

Q ss_pred             CCcccCccceeecccccCCCCCCcccccchhHHHHHHhhhccc-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCe
Q 018048           36 GTSFLGSTRKLRVNSVHSNQGNVRRRLPVVAVSEVVKEKKVKS-ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGK  114 (361)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk  114 (361)
                      +|+|+|.+.+|. .++..+++  -.-+++++++.+|.++..++ ...+.||+|+++++||.|+++|.||+++.+++++|+
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~p~~r~ld~~g~~~~~~~~~~ls~e~l~~~Yr~M~~~R~~e~~~~~l~~~G~   77 (395)
T d2bfda1           1 KPQFPGASAEFI-DKLEFIQP--NVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGR   77 (395)
T ss_dssp             CCCCTTCCCCCC-SSCCCCCC--CCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCCCCCccc-cccccCCC--ccCCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            468899988887 77777766  33467889999999987664 688899999999999999999999999999999999


Q ss_pred             eceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCc
Q 018048          115 MFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGF  194 (361)
Q Consensus       115 ~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~  194 (361)
                      +.|++ ++.||||+++|++.+|+++||++++||+|++.|++|+++..++++++++.++++.|++|++|+.++..++.+.+
T Consensus        78 i~~~~-~~~GqEA~~vg~~~al~~~D~~~~~yR~h~~~la~G~~~~~~~ael~g~~~g~~~Grggs~H~~~~~~~~~~~~  156 (395)
T d2bfda1          78 ISFYM-TNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTIS  156 (395)
T ss_dssp             SSCCC-CCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCC
T ss_pred             ccccc-CCCChHHHHHHHHHHcCCCCeeccccchhHhhhhhhCCHHHHHHHHhhcccCcccccccccccccccccccccc
Confidence            97655 57899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccccc
Q 018048          195 AFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRAT  274 (361)
Q Consensus       195 g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~  274 (361)
                      +++|.++|.|+|+|+|.|++       +.+++++|++|||++++|.|+|+||+|+.|+|||||||+||+|+++++...++
T Consensus       157 ~ivg~~~p~A~G~A~a~k~~-------~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~yaist~~~~~~  229 (395)
T d2bfda1         157 SPLATQIPQAVGAAYAAKRA-------NANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQY  229 (395)
T ss_dssp             SSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTC
T ss_pred             ccccccccHHHHHHHHhhhc-------CcccccccccCCCCccchhHHHHHHHHhhcCCceEEEEEecccccccccchhh
Confidence            99999999999999999988       57899999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-CCCCCCCHHHHHhHHHhh
Q 018048          275 SDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-DPDELRDPGEHLVLVLFI  352 (361)
Q Consensus       275 ~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-Dp~~yR~~~e~~~~~~~~  352 (361)
                      ...+++++|++||+++++|||+|+++|++++++|++++|+++||+|||+.|||+.+|+.+ |++.||+++|++.|...+
T Consensus       230 ~~~~i~~ra~~~gi~~~~vDG~Dv~aV~~a~~~A~~~~R~g~gP~lIE~~TyR~~~Hs~~DD~~~YR~~~Ei~~w~k~D  308 (395)
T d2bfda1         230 RGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHASTSDDSSAFRSVDEVNYWDKQD  308 (395)
T ss_dssp             SSSTTGGGTGGGTCEEEEEETTCHHHHHHHHHHHHHHHHHHTCCEEEEEECCCCC--CC-------------------C
T ss_pred             cchhHHHhhhccccceeEEecCcHHHHHHHHHHhhhhhhccCCceEEEEeeecCCCCCCcCCcccccCHHHHHHHHhcC
Confidence            888999999999999999999999999999999999999999999999999999999887 578999999999998876

>d1umda_ c.36.1.11 (A:) Branched-chain alpha-keto acid dehydrogenase, PP module {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Branched-chain alpha-keto acid dehydrogenase, PP module
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-64  Score=496.19  Aligned_cols=281  Identities=33%  Similarity=0.481  Sum_probs=266.8

Q ss_pred             HHHHHHhhhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCC-cEEEcc
Q 018048           67 VSEVVKEKKVKSISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKE-DSVVST  145 (361)
Q Consensus        67 ~~~~~~~~~~~~~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~-D~v~~~  145 (361)
                      ++.+++++...+...++||+|+++++|+.|+++|.||+++..++++|++ ||+|++.||||+++|++.+|+++ |+++++
T Consensus        11 ~r~l~~~g~~~~~~~~~ls~e~l~~~yr~M~~~R~~ee~~~~l~~~g~~-~~~~~~~GqEA~~vg~~~al~~~~D~~~~~   89 (362)
T d1umda_          11 IRLIGEEGEWLGDFPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKT-SFIAPAAGHEAAQVAIAHAIRPGFDWVFPY   89 (362)
T ss_dssp             BCCBCTTSCBCCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-SCCCCCTTCHHHHHHHHHHSCTTTSEEECC
T ss_pred             eEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ceeeCCCCHHHHHHHHHHHcCCCCCeEEec
Confidence            4556666666667789999999999999999999999999999999999 89999999999999999999985 999999


Q ss_pred             cCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          146 YRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       146 yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      ||+|++.|++|+++.++|.+++++.+|++.|++|++|+.++..++.+..+++|.++|.|+|+|+|.|++       +.+.
T Consensus        90 yR~h~~~la~G~~~~~~~ae~~gk~~g~~~Grggs~H~~~~~~~~~~~~~ivg~~~p~a~G~A~a~k~~-------~~~~  162 (362)
T d1umda_          90 YRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLL-------RTGQ  162 (362)
T ss_dssp             TTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHT-------TCCC
T ss_pred             cccHHHHHHHHhhHHHHHHHHhcccCCCcccccccccccccccCcccccccccccchHHHHHHHhhhcc-------cccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999998       5789


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al  305 (361)
                      +++|++|||++++|.|+|+||+|+.|+|||||||+||+|+++++...++..+++.++|.+||+++++|||+|+++|++++
T Consensus       163 v~v~~~GDGa~~eG~f~Ealn~A~~~~lPvifv~eNN~~aist~~~~~~~~~~~~~~a~~~gi~~~~vDGnDv~~v~~a~  242 (362)
T d1umda_         163 VAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLVDGMDVLASYYVV  242 (362)
T ss_dssp             CEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEEETTCHHHHHHHH
T ss_pred             eeeeeccCCcccCCchHHHHHHhhhccCCeeeeeeecccccccccccccccchhhhhhhhheeeeeEeccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988888899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCEEEEEEEecCCCCCCCCCC-CCCCHHHHHhHHHhhhcc
Q 018048          306 KEAIERARRGEGPTLVECETYRFRGHSLADPD-ELRDPGEHLVLVLFIFCH  355 (361)
Q Consensus       306 ~~Al~~ar~~~gP~lIev~t~R~~gHs~~Dp~-~yR~~~e~~~~~~~~~~~  355 (361)
                      ++|++++|+++||+|||+.|||+.||+.+|++ .||+++|++.|..-+|..
T Consensus       243 ~~Ai~~~R~g~gP~lIE~~tyR~~gHs~~Dd~~~YR~~~Ei~~w~~~DPi~  293 (362)
T d1umda_         243 KEAVERARRGEGPSLVELRVYRYGPHSSADDDSRYRPKEEVAFWRKKDPIP  293 (362)
T ss_dssp             HHHHHHHHTTCCCEEEEEECCCCSCSSTTCCGGGTSCHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhcCCCEEEEcccccccCCCccccchhhcchhhhHHHhcCCHHH
Confidence            99999999999999999999999999999865 699999999999876543

>d2ozla1 c.36.1.11 (A:1-361) E1-beta subunit of pyruvate dehydrogenase (PP module) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: E1-beta subunit of pyruvate dehydrogenase (PP module)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-60  Score=468.26  Aligned_cols=262  Identities=39%  Similarity=0.729  Sum_probs=246.9

Q ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcEEEcccCCcchhhcCCCC
Q 018048           79 ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVP  158 (361)
Q Consensus        79 ~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~v~~~yR~~~~~l~~g~~  158 (361)
                      +..+.|++|+++++||.|+++|.||+++.++++||++.||+|++.||||+++|++.+|+++||++++||+|++.|++|++
T Consensus        22 ~~~~~lske~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~h~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~  101 (361)
T d2ozla1          22 PVTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLS  101 (361)
T ss_dssp             CSEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcccccCCCCHHHHHHHHHHhCCccCEecccccchheeeeeccc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccC
Q 018048          159 ARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNN  238 (361)
Q Consensus       159 ~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~  238 (361)
                      +.+++++++++.++++.|++|++|+.++  ++.+.++++|.++|.|+|+|+|.|++       +.+++|+|++|||++++
T Consensus       102 ~~~~~ae~~gk~~g~~~G~~~~~h~~~~--~~~~~~~ivg~~~p~A~G~A~a~k~~-------~~~~v~~~~~GDGa~~e  172 (361)
T d2ozla1         102 VREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIALACKYN-------GKDEVCLTLYGDGAANQ  172 (361)
T ss_dssp             HHHHHHHHTTCTTSTTTTSSCTTCCCBT--TBCCCCCSTTTHHHHHHHHHHHHHHH-------TCCCCEEEEEETTGGGC
T ss_pred             chhhhhhccCCccccccccccccccccc--cccCccccccccchhHHHHHHHhhhc-------cCCCeEEEEecCCCccC
Confidence            9999999999999999999999998754  67888999999999999999999998       57899999999999999


Q ss_pred             cchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCC
Q 018048          239 GQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGP  318 (361)
Q Consensus       239 g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP  318 (361)
                      |.|+|+||+|+.|+|||||||+||+|+++++...++...+..+.  ++|+++++|||+|+++|++++++|++++|+++||
T Consensus       173 G~f~Ealn~A~~~~lPvifv~eNN~yaist~~~~~~~~~~~~~~--~~~~~~~~vdGnD~~av~~a~~~A~~~~R~g~gP  250 (361)
T d2ozla1         173 GQIFEAYNMAALWKLPCIFICENNRYGMGTSVERAAASTDYYKR--GDFIPGLRVDGMDILCVREATRFAAAYCRSGKGP  250 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGT--TTTSCEEEEETTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             cchhhhhhhhhhccCceEEEEEeCCcccCCCchhcccccccccc--ccccceEEeccCCchHHHHHHHHHHHHHhccCCC
Confidence            99999999999999999999999999999998877777776554  6789999999999999999999999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCC-CCCCHHHHHhHHHh
Q 018048          319 TLVECETYRFRGHSLADPD-ELRDPGEHLVLVLF  351 (361)
Q Consensus       319 ~lIev~t~R~~gHs~~Dp~-~yR~~~e~~~~~~~  351 (361)
                      +|||+.|||.+||+.+|++ .||+++|++.|...
T Consensus       251 ~liE~~TyR~~gHs~~D~~~~YR~~~Ei~~~~~k  284 (361)
T d2ozla1         251 ILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSK  284 (361)
T ss_dssp             EEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHH
T ss_pred             EEEEEeeecCCCCcccccccccCCHHHHHhhhhc
Confidence            9999999999999999975 79999999998654

>d1w85a_ c.36.1.11 (A:) Pyruvate dehydrogenase E1-alpha, PdhA {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase PP module
domain: Pyruvate dehydrogenase E1-alpha, PdhA
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.9e-60  Score=467.20  Aligned_cols=276  Identities=29%  Similarity=0.388  Sum_probs=248.9

Q ss_pred             cchhHHHHHHhhhccc-ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCeeceeeecCCCchhHHHHHHHhcCCCcE
Q 018048           63 PVVAVSEVVKEKKVKS-ISNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDS  141 (361)
Q Consensus        63 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ly~~M~~~R~~e~~~~~l~~~gk~~g~~~~~~GqEa~~vg~~~~l~~~D~  141 (361)
                      .+++.+.+|.++--.. ...+++++|+++++||.|+++|.||+++.++++||++ ||+|++.||||+++|++.+|+++||
T Consensus        16 ~~~~~~~l~~~g~~~~~~~~p~ls~e~l~~~yr~M~l~R~~e~~~~~l~~qG~i-g~~h~~~GqEa~~vg~~~~l~~~D~   94 (365)
T d1w85a_          16 QFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRL-GFYAPTAGQEASQIASHFALEKEDF   94 (365)
T ss_dssp             TCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred             cCCeEEEECCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-ccccCCCChHHHHHHHHHhCCCcCE
Confidence            4566778888877764 4667899999999999999999999999999999999 9999999999999999999999999


Q ss_pred             EEcccCCcchhhcCCCCHHHHHHHHhcCcCCCcccCCCccccccccccccCCccccccccHHHHHHHHHHHHHHhhhhhc
Q 018048          142 VVSTYRDHVHALSKGVPARAVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFTSKYRREVLKEA  221 (361)
Q Consensus       142 v~~~yR~~~~~l~~g~~~~~~~~el~~~~~g~~~gd~G~~h~~~~~~~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~  221 (361)
                      ++++||+|++.|++|+++.+++.++.|+..+...+         +..++.+..+++|.++|.|+|+|+|.|++       
T Consensus        95 i~~~yR~hg~~la~G~~~~~~~~~~~G~~~g~~~~---------~~~~~~~~~~ivG~~~p~AvG~A~a~k~~-------  158 (365)
T d1w85a_          95 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFHGNQIP---------EGVNVLPPQIIIGAQYIQAAGVALGLKMR-------  158 (365)
T ss_dssp             EECCSSCHHHHHHTTCCHHHHHHHHHTCGGGGCCC---------TTCCBCCCCCSTTHHHHHHHHHHHHHHHT-------
T ss_pred             eeecccchheeeecCCCHHHHHHhhCCCCCccCCC---------CCceeeccccccCccccchhhHHhhhhhc-------
Confidence            99999999999999999999999988775433222         23456778899999999999999999988       


Q ss_pred             CCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          222 DCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       222 ~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      +.+++|||++|||++++|.|+|+||+|+.|+|||||||+||+|+++++...++...++++++.+||+++++|||+|+.+|
T Consensus       159 ~~~~v~v~~~GDGa~~eG~f~EalN~A~~~~lPvlfv~eNN~~aist~~~~~~~~~~~~~r~~~~Gi~~~~vDG~D~~~v  238 (365)
T d1w85a_         159 GKKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQVDGMDPLAV  238 (365)
T ss_dssp             TCSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEEETTCHHHH
T ss_pred             ccCCceeeeccCCcccchhHHHHHHHhhhcccCceEEEEEecccccccccccccccchhhhcccccCceEEEecchhHHH
Confidence            57899999999999999999999999999999999999999999999998888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCCC--CCCCCCHHHHHhHHHhhhcc
Q 018048          302 REVAKEAIERARRGEGPTLVECETYRFRGHSLAD--PDELRDPGEHLVLVLFIFCH  355 (361)
Q Consensus       302 ~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~D--p~~yR~~~e~~~~~~~~~~~  355 (361)
                      ++++++|++++|+++||+|||++|||+.||+.+|  +..||+++|++.|..-+|..
T Consensus       239 ~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~dd~~~~YR~~eEi~~w~~~DPI~  294 (365)
T d1w85a_         239 YAAVKAARERAINGEGPTLIETLCFRYGPHTMSGDDPTRYRSKELENEWAKKDPLV  294 (365)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEEEECCCSSCSCSSCC------CHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhhcCCccEEEEeecccccccCCcCCcccccCChHHHHHHHhCCHHH
Confidence            9999999999999999999999999999999875  57899999999998766543

>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=99.93  E-value=8.1e-27  Score=214.20  Aligned_cols=172  Identities=20%  Similarity=0.222  Sum_probs=134.6

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCccccccc-------cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFSK-------EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~-------~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      ++|++++.+|....+.  +++.|.|++..|..       ++++  ++++++||+++|+|+|+++|           .|++
T Consensus         3 l~~~~v~~~l~~~l~~d~iiv~d~G~~~~~~~~~~~~~~~~~~~~s~~~g~mG~~lp~aiGa~~a-----------~p~~   71 (229)
T d2djia3           3 LQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMGIAIPGGLGAKNT-----------YPDR   71 (229)
T ss_dssp             CCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTTCHHHHHHHHHHH-----------CTTS
T ss_pred             CCHHHHHHHHHhhCCCCeEEEEcCcHhHHHHHHHcccCCCCeEEecCCcccccccchhhhhhhhh-----------cccc
Confidence            6899999999988875  46778887655542       3344  47789999999999999999           7999


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEEe
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHVD  294 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~Vd  294 (361)
                      +|||++|||+|+|+  .++|.||+++++|+++||.||+ +++..+..|           ...+||+++|++||+++++|+
T Consensus        72 ~vv~i~GDGsf~m~--~~eL~ta~~~~lpi~iiV~nN~-~~~~i~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~  148 (229)
T d2djia3          72 QVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNT-EYAFIKNKYEDTNKNLFGVDFTDVDYAKIAEAQGAKGFTVS  148 (229)
T ss_dssp             CEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECS-BCTHHHHHHHHHCSCCCSCBCCCCCHHHHHHHTTSEEEEEC
T ss_pred             cccccccccccccc--cchhhhhhcccCCceEEEeCCc-hhhhhhHHHHhhcCCCCcCcCCCCChhhhhhccCccEEEEe
Confidence            99999999999988  8999999999999999999998 444433221           256899999999999999998


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC----CCCCCCCCCCCCHHHHH
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECETYRFR----GHSLADPDELRDPGEHL  346 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~----gHs~~Dp~~yR~~~e~~  346 (361)
                      +.+  ++.+++++|++ +.+.++|+||||.+.+..    .+...|+..+ ++.++.
T Consensus       149 ~~~--el~~al~~A~~-~~~~~~p~lIev~v~~~~~~p~~~~~~~~~~~-~~~~~~  200 (229)
T d2djia3         149 RIE--DMDRVMAEAVA-ANKAGHTVVIDCKITQDRPIPVETLKLDSKLY-SEDEIK  200 (229)
T ss_dssp             BHH--HHHHHHHHHHH-HHHTTCCEEEEEECCSCCCCCTTSCTTCTTTS-CHHHHH
T ss_pred             cHH--HhHHHHHHHHH-hcCCCCeEEEEEEeCCCCCCCccccccCcccc-CHHHHH
Confidence            654  88788888876 345569999999998854    2233344444 555543

>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.93  E-value=1.4e-26  Score=212.41  Aligned_cols=156  Identities=21%  Similarity=0.260  Sum_probs=126.1

Q ss_pred             CCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          157 VPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       157 ~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      ++|++++.+|....+.  +.+.|.|+..+|.       .++++  .+++|+||+++|+|+|+++|           .|++
T Consensus         6 i~p~~v~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~glpaAiGa~la-----------~p~~   74 (228)
T d2ez9a3           6 LQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGVGIPGAIAAKLN-----------YPER   74 (228)
T ss_dssp             CCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTCHHHHHHHHHHH-----------CTTS
T ss_pred             cCHHHHHHHHHhhCCCCeEEEEcCcHHHHHHHHHccCCCCceeeeecccccccccchhhhhhhhh-----------hccc
Confidence            7899999999988874  5678888766653       23444  47889999999999999999           7999


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------------cCCcchhhccccCCccEEEE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------------TSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------------~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|            ...+||+++|++||+++++|
T Consensus        75 ~Vv~i~GDG~f~m~--~~EL~Ta~~~~lpi~~vV~NN~-~yg~i~~~q~~~~~~~~~~~~l~~~d~~~iA~a~G~~~~~v  151 (228)
T d2ez9a3          75 QVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNC-QYGWIKDEQEDTNQNDFIGVEFNDIDFSKIADGVHMQAFRV  151 (228)
T ss_dssp             CEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECS-BCHHHHHHHHHHCSSCCCSSBCCCCCHHHHHHHTTCEEEEE
T ss_pred             eeEeecCCcccccc--chhhhhhccccCceEEEEeccc-cchhhhhhhhhcccCCcccccccCccHHhhccccccceEEe
Confidence            99999999999998  9999999999999999999998 454443221            24689999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRG  330 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~g  330 (361)
                      +..+  ++..++++|  ++.+.++|+||||.+++...
T Consensus       152 ~~~~--el~~al~~a--~al~~~~p~lIev~vd~d~~  184 (228)
T d2ez9a3         152 NKIE--QLPDVFEQA--KAIAQHEPVLIDAVITGDRP  184 (228)
T ss_dssp             CBGG--GHHHHHHHH--HHHTTTSCEEEEEECCCCCC
T ss_pred             CCHH--HHHHHHHHH--HHHcCCCeEEEEEEECCCCc
Confidence            8766  554444443  24567899999999988653

>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=99.93  E-value=9.6e-27  Score=210.62  Aligned_cols=154  Identities=23%  Similarity=0.339  Sum_probs=125.9

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|+.++.+|....+.  +++.|.|++.+|.       .++++  .+++++||+++|+|+|+++|           .|+
T Consensus         2 ~i~P~~v~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~~A-----------~p~   70 (208)
T d1ybha3           2 AIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGAMGFGLPAAIGASVA-----------NPD   70 (208)
T ss_dssp             BCCHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCCTTCHHHHHHHHHHH-----------CTT
T ss_pred             ccCHHHHHHHHHhhCCcCeEEEEcCcHHHHHHHHhcccCCCceeccccccccchhhhhhHHHHHhc-----------CCC
Confidence            36899999999888774  5678888766653       23343  46789999999999999999           799


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc--------------------cCCcchhhccc
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA--------------------TSDPQIYKKGP  284 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q--------------------~~~~d~~~~A~  284 (361)
                      ++|||++|||+|+|+  .+||.||+++++|+++||.||+ +++..++.|                    ...+||.++|+
T Consensus        71 ~~Vi~i~GDGsf~m~--~~El~Ta~r~~lpi~iiV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~~~~~~~pd~~~iA~  147 (208)
T d1ybha3          71 AIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQ-HLGMVMQWEDRFYKANRAHTFLGDPAQEDEIFPNMLLFAA  147 (208)
T ss_dssp             SCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECS-BCHHHHHHHHHHSTTCCCSCBCSCGGGTTSCSSCHHHHHH
T ss_pred             CcEEEEccCCchhhh--hhhHHHHHHhCCCEEEEEEecc-ccccceehhhhcccccccccccccccccCCCCCCHHHhhc
Confidence            999999999999998  8999999999999999999998 554433211                    23479999999


Q ss_pred             cCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          285 AFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       285 a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      +||+++++|+..+  +    +++|++++++.++|+||||.+.+..
T Consensus       148 a~G~~~~~v~~~~--e----l~~al~~a~~~~~p~lIeV~id~~~  186 (208)
T d1ybha3         148 ACGIPAARVTKKA--D----LREAIQTMLDTPGPYLLDVICPHQE  186 (208)
T ss_dssp             HTTCCEEEECBHH--H----HHHHHHHHHHSSSCEEEEEECCTTC
T ss_pred             cCCceEEEcCCHH--H----HHHHHHHHHhCCCCEEEEEEECCCC
Confidence            9999999998655  4    5667777777899999999998754

>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.91  E-value=5.2e-26  Score=204.31  Aligned_cols=152  Identities=23%  Similarity=0.278  Sum_probs=119.1

Q ss_pred             CCCHHHHHHHHhcCc-------CCCcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhh
Q 018048          156 GVPARAVMSELFGKA-------TGCCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLK  219 (361)
Q Consensus       156 g~~~~~~~~el~~~~-------~g~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~  219 (361)
                      ++.+.+++.++....       +.+++.|.|.+.+|.       .++++  .+++|+||+++|+|+|+++|         
T Consensus         7 ~~~~~~v~~~l~~~~~~~~~p~d~iiv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp~aiGa~~a---------   77 (198)
T d2ihta3           7 GMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQPFGFLTSAGCSSFGYGIPAAIGAQMA---------   77 (198)
T ss_dssp             SBCHHHHHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHHCCCCSTTSEECCSSSCCTTCHHHHHHHHHHH---------
T ss_pred             CCCHHHHHHHHHHHHHhccCCCCEEEEEcCcHHHHHHHHHcCcCCCCeEEecCCcccchhHHHHHHHHhhh---------
Confidence            456666666554422       235677888765542       34455  46789999999999999999         


Q ss_pred             hcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc-------------ccCCcchhhccccC
Q 018048          220 EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR-------------ATSDPQIYKKGPAF  286 (361)
Q Consensus       220 ~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~-------------q~~~~d~~~~A~a~  286 (361)
                        .|+++|||++|||+|+|+  .+||.|++++++|+++||.||+ ++++.++.             ....+||.++|++|
T Consensus        78 --~p~~~Vv~i~GDGsf~~~--~~el~t~~~~~lpi~ivV~NN~-~~g~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~a~  152 (198)
T d2ihta3          78 --RPDQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNND-TNGLIELYQNIGHHRSHDPAVKFGGVDFVALAEAN  152 (198)
T ss_dssp             --STTSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECS-BCHHHHHHHHHHHSSCCGGGTBCCCCCHHHHHHHT
T ss_pred             --hcccceEeeccccccccc--chhhhhhhhhhhhhhHHHhhcc-ccceEeeeeccccccccccccccCCcchhhhcccc
Confidence              789999999999999988  8999999999999999999997 44433221             12468999999999


Q ss_pred             CccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          287 GMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       287 Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      |+++++|+..+      ++++|++++++.++|+||||+|.+
T Consensus       153 G~~~~~v~~~~------el~~al~~a~~~~~p~lIeV~vd~  187 (198)
T d2ihta3         153 GVDATRATNRE------ELLAALRKGAELGRPFLIEVPVNY  187 (198)
T ss_dssp             TCEEEECCSHH------HHHHHHHHHHTSSSCEEEEEEBCC
T ss_pred             CceEEEeCCHH------HHHHHHHHHHhCCCCEEEEEEcCC
Confidence            99999998654      456777788889999999999965

>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.4e-25  Score=205.67  Aligned_cols=155  Identities=23%  Similarity=0.353  Sum_probs=125.8

Q ss_pred             CCCCHHHHHHHHhcCcCC-----CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhh
Q 018048          155 KGVPARAVMSELFGKATG-----CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKE  220 (361)
Q Consensus       155 ~g~~~~~~~~el~~~~~g-----~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~  220 (361)
                      ..++|+.++++|....+.     +++.|.|++.+|.       .++++  .+++++||+++|+|+|+++|          
T Consensus         9 ~~i~P~~~~~~L~~~~~~~~~d~ivv~D~G~~~~~~~~~~~~~~p~~~i~~~~~g~mG~~~~aaiGa~lA----------   78 (227)
T d1t9ba3           9 SKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTWRNPHTFITSGGLGTMGYGLPAAIGAQVA----------   78 (227)
T ss_dssp             CCBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCCCSTTCEECCCSSCCTTCHHHHHHHHHHH----------
T ss_pred             CCcCHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHcCCCCCceEeeecccccchhhHHHHHHHHhc----------
Confidence            358999999998865542     4667888766653       23444  46889999999999999999          


Q ss_pred             cCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCc
Q 018048          221 ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGM  288 (361)
Q Consensus       221 ~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi  288 (361)
                       .|+++|||++|||+|+|+  .+||.|++++++|+++||.||+ +++...+.            ....+||.++|++||+
T Consensus        79 -~p~r~Vv~i~GDGsf~m~--~~EL~Ta~r~~l~i~iiV~nN~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~~iA~a~G~  154 (227)
T d1t9ba3          79 -KPESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNE-EQGMVTQWQSLFYEHRYSHTHQLNPDFIKLAEAMGL  154 (227)
T ss_dssp             -CTTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECS-SCHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHTTC
T ss_pred             -CCCCeEEEeCCCcccccc--hHHHHHHhhcCCceEEEEEecc-cccchhHHHhhhhccccccccCCCCCHHHHHhhccc
Confidence             799999999999999998  8999999999999999999998 44433321            1246899999999999


Q ss_pred             cEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          289 PGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       289 ~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      ++++|+..+      ++..|++++.+.++|+||||.+++..
T Consensus       155 ~~~~v~~~~------el~~al~~a~~~~~p~lieV~vd~~~  189 (227)
T d1t9ba3         155 KGLRVKKQE------ELDAKLKEFVSTKGPVLLEVEVDKKV  189 (227)
T ss_dssp             EEEEECSHH------HHHHHHHHHHHCSSCEEEEEEBCSSC
T ss_pred             ceEeeCCHH------HHHHHHHHHHHCCCCEEEEEEECCCC
Confidence            999998665      45667777778899999999998854

>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=99.90  E-value=3.1e-25  Score=196.64  Aligned_cols=150  Identities=21%  Similarity=0.337  Sum_probs=118.9

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------cccc-ccCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHN-LLGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~-~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .++|++++.+|...++.  ++..+.|+...+.       .++. +.++.|+||+++|+|+|+++|           .|++
T Consensus        11 ~i~p~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~~p~AiGa~la-----------~p~~   79 (183)
T d1q6za3          11 RLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLA-----------EPER   79 (183)
T ss_dssp             SBCHHHHHHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHH-----------CTTS
T ss_pred             CCCHHHHHHHHHHhCCCCcEEEEcCCchHHHHHHHHhhccccccccccCCCcccchhHHHhhhhh-----------cccc
Confidence            47899999999988774  4556677654331       1233 245678999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc------------ccCCcchhhccccCCccEEEE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR------------ATSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~------------q~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      +|||++|||+|+|+  .++|.|++++++|+++||.||+ +++..+..            ..+.+|+.++|++||+++++|
T Consensus        80 ~vv~i~GDG~f~~~--~~el~ta~~~~lpv~~iV~nN~-~~g~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v  156 (183)
T d1q6za3          80 QVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNG-TYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQALKA  156 (183)
T ss_dssp             CEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECS-BCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEEEE
T ss_pred             ceEEeccccccccc--cHHHHHHHHhCCCEEEEEEecc-ccchhhhhhhcccccCcccccCCCccHHHHHHHcCCEEEEE
Confidence            99999999999998  8999999999999998888887 44433221            124578999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      +..+  +    ++++++++.+.++|+||||+|
T Consensus       157 ~~~~--e----l~~al~~a~~~~gp~lieV~T  182 (183)
T d1q6za3         157 DNLE--Q----LKGSLQEALSAKGPVLIEVST  182 (183)
T ss_dssp             SSHH--H----HHHHHHHHHTCSSCEEEEEEB
T ss_pred             CCHH--H----HHHHHHHHHhCCCcEEEEEEe
Confidence            7543  4    566777777889999999987

>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.90  E-value=5.7e-25  Score=196.42  Aligned_cols=153  Identities=16%  Similarity=0.234  Sum_probs=122.7

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc-------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS-------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~-------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      .++|.+++.+|....+.  ++..|.|++.+|.       ++.++  .+++|.||+++|+|+|+++|           .|+
T Consensus         4 pi~P~~v~~~L~~~l~~d~ii~~d~G~~~~~~~~~l~~~~p~~~~~~~~~g~mG~~l~~aiGa~la-----------~p~   72 (192)
T d1ozha3           4 ALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVALPWAIGAWLV-----------NPE   72 (192)
T ss_dssp             SBCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCHHHHHHHHHHH-----------STT
T ss_pred             CcCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHhcccCCCceeecccccccccccccchhHHHhh-----------ccc
Confidence            47899999999888764  5667888754442       23333  46789999999999999999           789


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc-----------cCCcchhhccccCCccEEEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA-----------TSDPQIYKKGPAFGMPGFHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q-----------~~~~d~~~~A~a~Gi~~~~V  293 (361)
                      ++||+++|||+|+|+  .++|.|++++++|+++||.||+ .++..+..|           ...+||.++|++||+++++|
T Consensus        73 ~~vi~i~GDG~f~~~--~~el~t~~~~~l~~~iiv~nN~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v  149 (192)
T d1ozha3          73 RKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDN-GYNMVAIQEEKKYQRLSGVEFGPMDFKAYAESFGAKGFAV  149 (192)
T ss_dssp             SEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECS-BCHHHHHHHHHHHSSCCSCBCCCCCHHHHHHTTTSEEEEC
T ss_pred             ccceeecccccccch--hhhHHHHhhhcCceeEEEEcCC-CccccccccccccCccccCcCCCCCHHHHHHHhccccEEe
Confidence            999999999999998  8999999999999888888876 333332211           23579999999999999999


Q ss_pred             eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 018048          294 DGMDVLKVREVAKEAIERARRGEGPTLVECETYRF  328 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~  328 (361)
                      +..+  +    ++.|++++++.+||+||||.|++.
T Consensus       150 ~~~~--e----l~~al~~a~~~~gp~lIeV~vd~~  178 (192)
T d1ozha3         150 ESAE--A----LEPTLRAAMDVDGPAVVAIPVDYR  178 (192)
T ss_dssp             CSGG--G----HHHHHHHHHHSSSCEEEEEEBCCT
T ss_pred             CCHH--H----HHHHHHHHHHcCCcEEEEEEeCCC
Confidence            8776  4    566777777889999999999663

>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=99.88  E-value=8.2e-24  Score=189.41  Aligned_cols=153  Identities=14%  Similarity=0.098  Sum_probs=118.9

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCccccccc------cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFSK------EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~------~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .++++.+++++...++.  ++..|.|+..++..      +.++  .++.|+||+++|+|+|+++|           .|++
T Consensus         4 ~l~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiGa~la-----------~p~~   72 (196)
T d1ovma3           4 SLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQTA-----------CPNR   72 (196)
T ss_dssp             BCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHHH-----------CTTS
T ss_pred             ccCHHHHHHHHHhhCCCCCEEEEcCCHhHHHHHHhccCCCCeEEeCCCCccccccchhhHHHHHh-----------hhcc
Confidence            36889999998887663  56677776544421      2222  46789999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccc------cccCCcchhhccccCCc----cEEEEe
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHL------RATSDPQIYKKGPAFGM----PGFHVD  294 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~------~q~~~~d~~~~A~a~Gi----~~~~Vd  294 (361)
                      +|||++|||+|+|+  .++|.|++++++|+++||.||+ |++....+      .....+|+.+++++||+    ++++|+
T Consensus        73 ~vv~i~GDG~f~~~--~~eL~ta~~~~l~i~iiV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~v~  150 (196)
T d1ovma3          73 RVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSECWRVS  150 (196)
T ss_dssp             CEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEEEEEC
T ss_pred             ceecccccccceee--cccccccccccccceEEEEecCccccchhhhccccccccccccccchhHHhcCccccceeEEEe
Confidence            99999999999998  8999999999999988888886 54321111      11235789999999986    577887


Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 018048          295 GMDVLKVREVAKEAIERARRGEGPTLVECETYR  327 (361)
Q Consensus       295 g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R  327 (361)
                      ..+      ++++|++++++.+||+||||++.+
T Consensus       151 ~~~------el~~al~~a~~~~gp~lIev~~~~  177 (196)
T d1ovma3         151 EAE------QLADVLEKVAHHERLSLIEVMLPK  177 (196)
T ss_dssp             BHH------HHHHHHHHHTTCSSEEEEEEECCT
T ss_pred             cHH------HHHHHHHHHHHCCCcEEEEEEeCh
Confidence            554      456778888889999999998865

>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=99.88  E-value=9.7e-24  Score=190.12  Aligned_cols=152  Identities=18%  Similarity=0.212  Sum_probs=115.7

Q ss_pred             CCCHHHHHHHHhcCcCC--CcccCCCcccccc------ccccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCc
Q 018048          156 GVPARAVMSELFGKATG--CCRGQGGSMHMFS------KEHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDH  225 (361)
Q Consensus       156 g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~------~~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~  225 (361)
                      .++++++++++...++.  ++..|.|++.++.      ++.++  .+++|+||+++|+|+|+++|           .|++
T Consensus         2 Pl~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~aAiGa~la-----------~p~~   70 (204)
T d1zpda3           2 PLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVG-----------APER   70 (204)
T ss_dssp             BCCHHHHHHHHHHTCCTTEEEEECSSHHHHHHHTCCCCTTCEEEECTTTCCTTTHHHHHHHHHHH-----------CTTS
T ss_pred             CCCHHHHHHHHHhhCCCCCEEEECchHhHHHHHHhCCCCCCeEEcCCCCcccchhhHHHHHHHHh-----------CCCC
Confidence            46889999999998875  5667888643322      22233  47789999999999999999           7899


Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc------cCCcchhhc---------cccCCccE
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------TSDPQIYKK---------GPAFGMPG  290 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q------~~~~d~~~~---------A~a~Gi~~  290 (361)
                      +|||++|||+|+|+  .+||.||+++++|+++||.||+ ++++.+..|      ...+|+.++         ++++|+++
T Consensus        71 ~vv~i~GDGsf~m~--~~eL~Ta~~~~lpi~iiV~NN~-~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~a~~~g~~~  147 (204)
T d1zpda3          71 RNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNY-GYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAKG  147 (204)
T ss_dssp             EEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECS-SCHHHHTTSCCGGGCCCCCCHHHHHHHHHCTTSSSCCCCEE
T ss_pred             ceeccccccceeee--ecccchhhhcccccceEEEecc-cccccceeccccccccchhhhhhhhhhcCcchhhhccCccE
Confidence            99999999999998  8999999999999999999887 444432222      234455554         45679999


Q ss_pred             EEEeCCCHHHHHHHHHHHHHHHH-cCCCCEEEEEEEec
Q 018048          291 FHVDGMDVLKVREVAKEAIERAR-RGEGPTLVECETYR  327 (361)
Q Consensus       291 ~~Vdg~D~~~v~~al~~Al~~ar-~~~gP~lIev~t~R  327 (361)
                      ++|+..+  ++    .+|+++++ +.++|+||||.+.|
T Consensus       148 ~~v~~~~--el----~~al~~al~~~~gp~lieV~vd~  179 (204)
T d1zpda3         148 LKAKTGG--EL----AEAIKVALANTDGPTLIECFIGR  179 (204)
T ss_dssp             EEESBHH--HH----HHHHHHHHHCCSSCEEEEEECCT
T ss_pred             EEecCHH--HH----HHHHHHHHHcCCCcEEEEEEECc
Confidence            9997655  54    55555554 56899999998865

>d1pvda3 c.36.1.9 (A:361-556) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.1e-23  Score=186.52  Aligned_cols=157  Identities=15%  Similarity=0.100  Sum_probs=119.0

Q ss_pred             CCCCHHHHHHHHhcCcCC--CcccCCCccccccc------cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCC
Q 018048          155 KGVPARAVMSELFGKATG--CCRGQGGSMHMFSK------EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCD  224 (361)
Q Consensus       155 ~g~~~~~~~~el~~~~~g--~~~gd~G~~h~~~~------~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~  224 (361)
                      ..++|+.++.+|...+++  ++..+.|.+.+|..      +..+  ....++||+++|+|+|+|+|.+..       +|+
T Consensus         3 ~Pl~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~aiG~alaa~~~-------~p~   75 (196)
T d1pvda3           3 TPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGATLGAAFAAEEI-------DPK   75 (196)
T ss_dssp             SBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGCCCCSSCEEECCTTTCCTTHHHHHHHHHHHHHHHH-------CTT
T ss_pred             CCcCHHHHHHHHHhhCCCCCEEEECCcHhHHHHHHhhccCCCEEEccCCcCcccccccchhHHHHHHHhc-------CCC
Confidence            457899999999998874  56778886655532      1222  467899999999999999998776       689


Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccccccccc--------ccCCcchhhccccCCccE---EEE
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLR--------ATSDPQIYKKGPAFGMPG---FHV  293 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~--------q~~~~d~~~~A~a~Gi~~---~~V  293 (361)
                      ++|||++|||+|+|+  .+||.|++++++|+++||.||+ +++..+..        ....+||.++|++||+++   .+|
T Consensus        76 ~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~i~~iV~nN~-~y~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~~~~v  152 (196)
T d1pvda3          76 KRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNND-GYTIEKLIHGPKAQYNEIQGWDHLSLLPTFGAKDYETHRV  152 (196)
T ss_dssp             CCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESS-SCHHHHTTSCTTCGGGCCCCCCGGGHHHHTTCSSEEEEEE
T ss_pred             CceeeccCccccccc--cccccccccccccceEEEEeCC-ccceeEeeccCccccccCCCCCHHHHHHHhCCCCceEEEe
Confidence            999999999999998  8999999999999888888887 33332211        124679999999999765   456


Q ss_pred             eCCCHHHHHHHHHHHHHHH--HcCCCCEEEEEEEec
Q 018048          294 DGMDVLKVREVAKEAIERA--RRGEGPTLVECETYR  327 (361)
Q Consensus       294 dg~D~~~v~~al~~Al~~a--r~~~gP~lIev~t~R  327 (361)
                      +..  .++    +++++++  .+.++|+||||++.+
T Consensus       153 ~~~--~el----~~al~~~~~~~~~~~~lIeV~i~~  182 (196)
T d1pvda3         153 ATT--GEW----DKLTQDKSFNDNSKIRMIEIMLPV  182 (196)
T ss_dssp             CBH--HHH----HHHHTCTTTTSCSSEEEEEEECCT
T ss_pred             cCH--HHH----HHHHHHHHHhCCCCcEEEEEECCC
Confidence            544  354    4444332  356789999998765

>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase PP module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=99.87  E-value=5.9e-23  Score=181.80  Aligned_cols=122  Identities=20%  Similarity=0.198  Sum_probs=98.5

Q ss_pred             cccc--cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc
Q 018048          187 EHNL--LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW  264 (361)
Q Consensus       187 ~~~~--~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y  264 (361)
                      ++++  ++++|+||+++|+|+|++.+            ++++||+++|||+|+|+  .++|.||+++++|+++||.||+ 
T Consensus        47 p~~~~~~~~~g~mG~~l~~aig~~a~------------~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~iiV~NN~-  111 (183)
T d2ji7a3          47 PRKRLDSGTWGVMGIGMGYCVAAAAV------------TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNG-  111 (183)
T ss_dssp             TTCEEECTTTTCTTCHHHHHHHHHHH------------HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECS-
T ss_pred             CCcEEecCCccccccccchhhhhhcC------------CcceEEEEEcCcchhhc--hhhhhhhhhccccchhhhhhhh-
Confidence            3444  46789999999999987743            68899999999999998  8999999999999999999997 


Q ss_pred             ccccccccc----------cCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCC
Q 018048          265 AIGMSHLRA----------TSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFR  329 (361)
Q Consensus       265 ~is~~~~~q----------~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~  329 (361)
                      ++....+.+          ...+||.++|++||+++++|+..+  +    +++|++++++.++|+||||.|++.-
T Consensus       112 g~~~~~q~~~~~~~~~~~~~~~~d~~~~A~a~G~~~~~v~~~~--e----l~~al~~a~~~~~p~lIev~idp~~  180 (183)
T d2ji7a3         112 GIYKGNEADPQPGVISCTRLTRGRYDMMMEAFGGKGYVANTPA--E----LKAALEEAVASGKPCLINAMIDPDA  180 (183)
T ss_dssp             BSSCSCCCCSBTTBCCTTBCCCCCHHHHHHHTTCEEEEECSHH--H----HHHHHHHHHHHTSCEEEEEEBCTTS
T ss_pred             hhhhhhhccccccccccccccccchhhhhhhcCCcEEEeCCHH--H----HHHHHHHHHhCCCcEEEEEEECCCC
Confidence            443322221          245799999999999999998665  4    4556666667799999999997643

>d2r8oa2 c.36.1.10 (A:2-332) Transketolase (TK), PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=5e-17  Score=155.83  Aligned_cols=159  Identities=24%  Similarity=0.263  Sum_probs=124.1

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhh---cCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~---~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++-..+|+||.+++.|+|.|+|.|+.+.....   ...++.|+|++|||.+++|.++|++++|+.++|. +++|+.||++
T Consensus       107 gve~stGsLG~Gl~~avG~Ala~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~wEA~~~A~~~kL~nLi~i~D~N~~  186 (331)
T d2r8oa2         107 GVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGI  186 (331)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred             CcccCcCchhhhhHHHHHHHHHHHHHhhhhccccccccCceEEEecccccccccchhHhhhhcchhcccceeeHHhhhhh
Confidence            34567899999999999999999887543211   1246789999999999999999999999999997 9999999987


Q ss_pred             ccccccccccCCcchhhccccCCccEE-EEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCCC-C-CC---
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGF-HVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLA-D-PD---  337 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~-~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~~-D-p~---  337 (361)
                      .+....... ...++.++.++||+.++ .+||+|..++.+    |++.+++ .++|++|.+.|.+..|.+.. + +.   
T Consensus       187 ~~~g~~~~~-~~~~~~~rf~afGw~vi~~~dghd~~~i~~----A~~~a~~~~~kP~~Ii~~TikGkG~~~~e~~~~~Hg  261 (331)
T d2r8oa2         187 SIDGHVEGW-FTDDTAMRFEAYGWHVIRDIDGHDAASIKR----AVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHG  261 (331)
T ss_dssp             ETTEEGGGT-CCCCHHHHHHHTTCEEEEEEETTCHHHHHH----HHHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred             ccccccccc-cchhHHHHHHHcCCeeecccccchHHHHHH----HHHHHHhhcCCCccceeeeeeecCCcccCCCchhhc
Confidence            766554433 35688999999999998 589999876654    5555554 67899999999999998754 2 22   


Q ss_pred             CCCCHHHHHhHHHhh
Q 018048          338 ELRDPGEHLVLVLFI  352 (361)
Q Consensus       338 ~yR~~~e~~~~~~~~  352 (361)
                      ..-+++|++....+.
T Consensus       262 ~~l~~~e~~~ak~~L  276 (331)
T d2r8oa2         262 APLGDAEIALTREQL  276 (331)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHc
Confidence            234677877666553

>d1r9ja2 c.36.1.10 (A:1-336) Transketolase (TK), PP module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=99.69  E-value=5.6e-17  Score=155.83  Aligned_cols=160  Identities=21%  Similarity=0.191  Sum_probs=120.5

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhhh---cCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA  265 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~---~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~  265 (361)
                      +-..+|+||.|++.|+|.|+|.++....+..   ..-+..|+|++|||.+++|.++|++.+|..++|+ +++|+.||...
T Consensus       109 ve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~vy~~~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~~  188 (336)
T d1r9ja2         109 VEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYIS  188 (336)
T ss_dssp             CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBC
T ss_pred             ccccccccccCcchhhHHHHHHHHHhccccccccccccceeEEeccchhhchHHHHHHHHHHHHhhcCCEEEEEeccccc
Confidence            3455799999999999999998886544321   1235789999999999999999999999999998 88888888866


Q ss_pred             cccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCCCCCC----CCC
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLADPD----ELR  340 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~~Dp~----~yR  340 (361)
                      +.... ......++.++.++||+.++.||+.+...  ..+..+++.++. .++|++|.++|.+..|.+..+..    ...
T Consensus       189 idg~~-~~~~~~d~~~rf~afGW~vi~Vdgg~~d~--~~~~~~~~~a~~~~~kP~~Ii~kTiiG~G~~~e~~~~~Hg~pl  265 (336)
T d1r9ja2         189 IDGST-SLSFTEQCHQKYVAMGFHVIEVKNGDTDY--EGLRKALAEAKATKGKPKMIVQTTTIGFGSSKQGTEKVHGAPL  265 (336)
T ss_dssp             SSSBG-GGTCCCCHHHHHHHTTCEEEEESCTTTCH--HHHHHHHHHHHHCCSSCEEEEEECCTTTTSTTTTSGGGTSSCC
T ss_pred             ccccc-cccchhHHHHHHHHhccceEEEecCchHH--HHHHHHhhhhhhccCCCccceEEEEEeecccccCCcceeecCC
Confidence            65433 23345689999999999999998743211  123334444443 55899999999999998766532    235


Q ss_pred             CHHHHHhHHHhh
Q 018048          341 DPGEHLVLVLFI  352 (361)
Q Consensus       341 ~~~e~~~~~~~~  352 (361)
                      +++|++.+....
T Consensus       266 ~~eEi~~~k~~l  277 (336)
T d1r9ja2         266 GEEDIANIKAKF  277 (336)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHc
Confidence            888887766543

>d1gpua1 c.36.1.10 (A:3-337) Transketolase (TK), PP module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=6.8e-16  Score=148.10  Aligned_cols=158  Identities=22%  Similarity=0.223  Sum_probs=118.8

Q ss_pred             cccCCccccccccHHHHHHHHHHHHHHhhhhh---cCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCc
Q 018048          189 NLLGGFAFIGEGIPVATGAAFTSKYRREVLKE---ADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLW  264 (361)
Q Consensus       189 ~~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~---~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y  264 (361)
                      ++-..+|+||.+++.|+|.|+|.|+..+....   ...++.|+|++|||.+++|..+|++.+|+.++|. +|+|+.+|++
T Consensus       108 gie~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~~l~GDGel~EG~~~EA~~~A~~~~L~NLi~i~D~N~~  187 (335)
T d1gpua1         108 GVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQEGISSEASSLAGHLKLGNLIAIYDDNKI  187 (335)
T ss_dssp             TCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSE
T ss_pred             CeEeCCCChhHHHHHHHHHHHHhHhhhcccccCCcCCCCCcEEEEecchhhchhhhhhhHhHhhhhccCCEEEEEecccc
Confidence            34457899999999999999999887654321   1346889999999999999999999999999997 9999999987


Q ss_pred             ccccccccccCCcchhhccccCCccEEEEeCCC--HHHHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCCCCCCCCC--C
Q 018048          265 AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMD--VLKVREVAKEAIERAR-RGEGPTLVECETYRFRGHSLADPDE--L  339 (361)
Q Consensus       265 ~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D--~~~v~~al~~Al~~ar-~~~gP~lIev~t~R~~gHs~~Dp~~--y  339 (361)
                      .+....... ...++.++.++||+.++.|++.+  ...    +..++..+. ..++|++|.++|.+..|....+...  +
T Consensus       188 ~~dg~~~~~-~~~~~~~~f~a~GW~vi~vdg~~~d~~~----~~~~~~~~~~~~~KPt~Iia~TikGkGs~~e~~~~~Hg  262 (335)
T d1gpua1         188 TIDGATSIS-FDEDVAKRYEAYGWEVLYVENGNEDLAG----IAKAIAQAKLSKDKPTLIKMTTTIGYGSLHAGSHSVHG  262 (335)
T ss_dssp             ETTEEGGGT-CCCCHHHHHHHHTCEEEEESCTTTCHHH----HHHHHHHHHHCTTSCEEEEEECCTTTTSTTTTSGGGSS
T ss_pred             ccccccccc-ccCCHHHHHHhCCCcEEEEcCCchhHHH----HHHHHhhhhcccCCCcceEEeeccCCcCcccCchhHHh
Confidence            775544333 34689999999999999998654  333    334444444 3568999999999999855443211  1


Q ss_pred             --CCHHHHHhHHHh
Q 018048          340 --RDPGEHLVLVLF  351 (361)
Q Consensus       340 --R~~~e~~~~~~~  351 (361)
                        -+++|++.....
T Consensus       263 ~~l~~eei~~~k~~  276 (335)
T d1gpua1         263 APLKADDVKQLKSK  276 (335)
T ss_dssp             SCCCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHH
Confidence              366676665554

>d1itza1 c.36.1.10 (A:10-347) Transketolase (TK), PP module {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Transketolase (TK), PP module
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.60  E-value=2.9e-15  Score=143.76  Aligned_cols=158  Identities=20%  Similarity=0.187  Sum_probs=120.8

Q ss_pred             ccCCccccccccHHHHHHHHHHHHHHhhhh---hcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcc
Q 018048          190 LLGGFAFIGEGIPVATGAAFTSKYRREVLK---EADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWA  265 (361)
Q Consensus       190 ~~~~~g~mG~~lP~AiGaA~A~k~~~~~~~---~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~  265 (361)
                      +-..+|+||.+++.|+|.|+|.++.+....   ....+..|+|++|||.+++|.++|++.+|..++|. +++|+.+|++.
T Consensus       113 ve~stGsLG~Gl~~avG~A~a~k~~~~~~~~~~~~~~~~~v~vl~GDGel~EG~~wEA~~~A~~~~L~NLi~i~D~N~~~  192 (338)
T d1itza1         113 VEVTTGPLGQGIANAVGLALAEKHLAARFNKPDSEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHIS  192 (338)
T ss_dssp             CCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEE
T ss_pred             ccccCCcHHhhHHHHHHHHHHHHHHhccccccccccccceEEEEeCccccchHHHHHHHhHhhhhhccceeeeehhhccc
Confidence            445689999999999999999887654432   12346789999999999999999999999999997 99999999877


Q ss_pred             cccccccccCCcchhhccccCCccEEEEeCC--CHHHHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCCCCC-C-CC-CC
Q 018048          266 IGMSHLRATSDPQIYKKGPAFGMPGFHVDGM--DVLKVREVAKEAIERARR-GEGPTLVECETYRFRGHSLA-D-PD-EL  339 (361)
Q Consensus       266 is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~--D~~~v~~al~~Al~~ar~-~~gP~lIev~t~R~~gHs~~-D-p~-~y  339 (361)
                      +..... .....++.++.++||+.++.|++.  |..+    +..|++.+.. .++|++|.+.|....|.+.. + +. .+
T Consensus       193 ~dg~~~-~~~~~~~~~k~~a~Gw~vi~v~~g~~~~~~----i~~a~~~a~~~~~kPt~Iia~TikGkG~~~~e~~~~~Hg  267 (338)
T d1itza1         193 IDGDTE-IAFTEDVSTRFEALGWHTIWVKNGNTGYDD----IRAAIKEAKAVTDKPTLIKVTTTIGFGSPNKANSYSVHG  267 (338)
T ss_dssp             TTEEGG-GTCCSCHHHHHHHTTCEEEEESCTTTCHHH----HHHHHHHHHHCCSSCEEEEEECCTTTTCTTTTTSGGGTS
T ss_pred             cccccc-cccCCCHHHHHHhcCCeEEEeeCCchhHHH----HHHHHHHHHHccCCCceeEeecCcccCcCccCCCcchhh
Confidence            665433 344568999999999999987653  4444    4556666543 56899999999999997654 3 22 23


Q ss_pred             --CCHHHHHhHHHhh
Q 018048          340 --RDPGEHLVLVLFI  352 (361)
Q Consensus       340 --R~~~e~~~~~~~~  352 (361)
                        -+++|++....+.
T Consensus       268 ~~l~~ee~~~a~~~L  282 (338)
T d1itza1         268 SALGAKEVEATRQNL  282 (338)
T ss_dssp             SCCCHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHc
Confidence              3677776655544

>d2ieaa2 c.36.1.10 (A:56-470) Pyruvate dehydrogenase E1 component, PP module {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like PP module
domain: Pyruvate dehydrogenase E1 component, PP module
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.8e-13  Score=134.61  Aligned_cols=159  Identities=19%  Similarity=0.095  Sum_probs=112.1

Q ss_pred             cCCccccccccHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCC-eEEEEEcCCcccccc
Q 018048          191 LGGFAFIGEGIPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLP-IVFVVENNLWAIGMS  269 (361)
Q Consensus       191 ~~~~g~mG~~lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LP-vi~VV~NN~y~is~~  269 (361)
                      ....+++|.+...++|.+.+.++..........+..|+|++|||++++|..+|++++|..++|. +|+|+.+|.+.+...
T Consensus       133 ~~~~~~~~~g~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~gDg~~~eg~~~ea~~~a~~~~l~nl~~i~d~N~~~~~~~  212 (415)
T d2ieaa2         133 QFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGP  212 (415)
T ss_dssp             CCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSB
T ss_pred             cCCCchhhhHHHHHHHHHHHHHHHhhhccccCCCceEEEEecccccchHHHHHHHHHHHHhCCCeEEEEEeCCceeeccC
Confidence            3445677777777777776655543333333467889999999999999999999999999995 999999998777655


Q ss_pred             ccccc-CCcchhhccccCCccEEEE-------------------------------------------------------
Q 018048          270 HLRAT-SDPQIYKKGPAFGMPGFHV-------------------------------------------------------  293 (361)
Q Consensus       270 ~~~q~-~~~d~~~~A~a~Gi~~~~V-------------------------------------------------------  293 (361)
                      ..... ...++.++.++||+.++.|                                                       
T Consensus       213 ~~~~~~~~~~~~~~~~~~gw~v~~~~~~~~~~~~~~~d~~~al~~~~~~~v~g~~~~~~~~~ga~~~~~~~~~~~~~~~l  292 (415)
T d2ieaa2         213 VTGNGKIINELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYVREHFFGKYPETAAL  292 (415)
T ss_dssp             SCTTSCHHHHHHHHHHHTTCEEEEECBCGGGHHHHHHCSSCHHHHHHHHCCHHHHHHHTTSCHHHHHHHTGGGSHHHHTT
T ss_pred             hhccccchHHHHHHHHhcCceeEEeecchhhhhhhccchhhhhhhhhhccccccceeccccchhhhhhhhccccchhhHH
Confidence            43222 2357888899999999877                                                       


Q ss_pred             --------------eCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC-C-CC---CC--CCHHHHHhHHHhh
Q 018048          294 --------------DGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA-D-PD---EL--RDPGEHLVLVLFI  352 (361)
Q Consensus       294 --------------dg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~-D-p~---~y--R~~~e~~~~~~~~  352 (361)
                                    +|+|+.++++++++|.+   ..++|++|.++|.+.+|-... . .+   .|  -+++|++.+...+
T Consensus       293 ~~~l~~~~~~~l~~dGHd~~~l~~a~~~ak~---~~d~P~vI~a~TiKGkGlp~A~e~~n~~H~~kkl~~Ee~~~~r~rl  369 (415)
T d2ieaa2         293 VADWTDEQIWALNRGGHDPKKIYAAFKKAQE---TKGKATVILAHTIKGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRF  369 (415)
T ss_dssp             STTSCHHHHTTCCBGGGCHHHHHHHHHHHHH---CCSSCEEEEEECCTTTTCTTCC-------------CHHHHHHHHHT
T ss_pred             HhhhhhhhhhhhhhccCchhhhHHHHHHHHh---cCCCceEEEEecccccCCCccccccchhcCCCCCCHHHHHHHHHHc
Confidence                          67787877766665532   346799999999998886543 1 11   12  3567776555444

>d2c42a2 c.36.1.12 (A:786-1232) Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR PP module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domains VI
species: Desulfovibrio africanus [TaxId: 873]

Probab=98.31  E-value=2.2e-06  Score=83.35  Aligned_cols=99  Identities=16%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             CCCceEEEEECCCccc-CcchHHHHHHhhhCCCCeEEEEEcCC-ccccccccc----------------ccCCcchhhcc
Q 018048          222 DCDHVTLAFFGDGTCN-NGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLR----------------ATSDPQIYKKG  283 (361)
Q Consensus       222 ~~~~~Vv~~~GDGs~~-~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~----------------q~~~~d~~~~A  283 (361)
                      ..+..||++.|||.+. .|  .+.|.-|...+.+|++||.||. |+.+..+..                .....|+..++
T Consensus       167 ~~k~~V~~~gGDG~~~dIG--~~~L~~A~~rg~nit~ivlDNe~Y~nTGgQ~S~~TP~Ga~t~ttp~Gk~~~kkdi~~ia  244 (447)
T d2c42a2         167 YTKKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMV  244 (447)
T ss_dssp             TSCCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHH
T ss_pred             ccCCcEEEEecCccHhhcC--hHHHHHHHHcCCCceEEEEcCccccCCCCcCCCCCcCCeecccccCCCcCCCCCHHHHH
Confidence            3567899999999877 88  8999999999999999999998 654322111                01235788999


Q ss_pred             ccCCccEE-EEe-CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEe
Q 018048          284 PAFGMPGF-HVD-GMDVLKVREVAKEAIERARRGEGPTLVECETY  326 (361)
Q Consensus       284 ~a~Gi~~~-~Vd-g~D~~~v~~al~~Al~~ar~~~gP~lIev~t~  326 (361)
                      .++|++++ ++. +.++.++.+    +++++++.+||.+|++...
T Consensus       245 ~a~g~~YVA~~s~~~~~~~l~k----aikeA~~~~GpS~I~~~sP  285 (447)
T d2c42a2         245 MTYGYVYVATVSMGYSKQQFLK----VLKEAESFPGPSLVIAYAT  285 (447)
T ss_dssp             HTTSSSEEEEECTTTCHHHHHH----HHHHHHHSSSCEEEEEECC
T ss_pred             HHCCCceEEEEeCCCCHHHHHH----HHHHHHhCCCCeEEEeecC
Confidence            99999988 564 567666544    5555667899999999764

>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.53  E-value=0.0033  Score=53.43  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=64.3

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCC-cccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNL-WAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREV  304 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~-y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~a  304 (361)
                      ++++..|=|..+.   ...|..|...+.|+|+|.-+.. ....  ........|...+.+.+--...+|...  .++.+.
T Consensus        65 v~~~t~GpG~~n~---~~gl~~A~~~~~Pvl~i~g~~~~~~~~--~~~~~q~~d~~~~~~~~tk~~~~v~~~--~~i~~~  137 (186)
T d2ihta2          65 ACWATLGPGMTNL---STGIATSVLDRSPVIALAAQSESHDIF--PNDTHQCLDSVAIVAPMSKYAVELQRP--HEITDL  137 (186)
T ss_dssp             EEEECTTHHHHHH---HHHHHHHHHHTCCEEEEEEESCGGGCC--TTTSTTCCCHHHHHGGGSSEEEECCSG--GGHHHH
T ss_pred             eeeccccccccch---hhhhhHHHHhhccceeeeccCcchhcc--ccccccccccccccCCceeeccccCCc--hhhhhH
Confidence            3333446665552   6678999999999999987544 1211  112223457777777777677788644  488888


Q ss_pred             HHHHHHHHHcCC-CCEEEEEEEe
Q 018048          305 AKEAIERARRGE-GPTLVECETY  326 (361)
Q Consensus       305 l~~Al~~ar~~~-gP~lIev~t~  326 (361)
                      +++|+..++.+. ||+.|++-.+
T Consensus       138 l~~A~~~a~s~~~GPv~l~iP~D  160 (186)
T d2ihta2         138 VDSAVNAAMTEPVGPSFISLPVD  160 (186)
T ss_dssp             HHHHHHHHTBSSCCCEEEEEEHH
T ss_pred             HHHHHHHHhcCCCeeEEEEeCHh
Confidence            999999998764 7999999654

>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.51  E-value=0.0069  Score=51.32  Aligned_cols=96  Identities=13%  Similarity=0.125  Sum_probs=62.7

Q ss_pred             ceEEEE-ECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc---ccccccccCC---cchhhccccCCccEEEEeCCC
Q 018048          225 HVTLAF-FGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI---GMSHLRATSD---PQIYKKGPAFGMPGFHVDGMD  297 (361)
Q Consensus       225 ~~Vv~~-~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i---s~~~~~q~~~---~d~~~~A~a~Gi~~~~Vdg~D  297 (361)
                      +.++|+ .|=|..+ .  ...|..|...++|+|+|+-+.....   +...+.+...   .+..++.+.+--...+|+..+
T Consensus        65 ~~~v~~t~GpG~~N-~--~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~  141 (186)
T d1zpda2          65 AAAAVVTYSVGALS-A--FDAIGGAYAENLPVILISGAPNNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPE  141 (186)
T ss_dssp             CEEEEECTTTTHHH-H--HHHHHHHHHTTCCEEEEEEECCGGGTTTTCBCTTSCSSSCCCHHHHHHGGGCSCEEEECSGG
T ss_pred             cceeEeeccccchh-h--hhhhhhhhhcccceEEEecccCcccccCCCcceeecCCcchhhhhhccCCceeeeeEcCCHH
Confidence            344444 4544443 3  6789999999999999997644111   1111111111   234456677777777887554


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          298 VLKVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       298 ~~~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                        ++.+.+++|++.+..+++|+.|++-.
T Consensus       142 --~~~~~i~~A~~~A~~~~~PV~l~iP~  167 (186)
T d1zpda2         142 --EAPAKIDHVIKTALREKKPVYLEIAC  167 (186)
T ss_dssp             --GHHHHHHHHHHHHHHHTCCEEEEEET
T ss_pred             --HHHHHHHHHHHHHhhCCCCEEEECCc
Confidence              78888999999999888999999854

>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Aerococcus viridans [TaxId: 1377]

Probab=96.48  E-value=0.006  Score=51.73  Aligned_cols=96  Identities=15%  Similarity=0.113  Sum_probs=64.1

Q ss_pred             CCceEEEEE--CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHH
Q 018048          223 CDHVTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLK  300 (361)
Q Consensus       223 ~~~~Vv~~~--GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~  300 (361)
                      .+++.+|++  |=|..+ .  ...|..|...+.|+|+|.-+..... . ........|...+.+.+.-...+|+..  .+
T Consensus        66 tg~~gv~~~t~GpG~~n-~--~~gl~~A~~~~~Pvl~i~g~~~~~~-~-~~~~~Q~~d~~~~~~~itk~~~~v~~~--~~  138 (184)
T d2djia2          66 GGNLGVTVGSGGPGASH-L--INGLYDAAMDNIPVVAILGSRPQRE-L-NMDAFQELNQNPMYDHIAVYNRRVAYA--EQ  138 (184)
T ss_dssp             TCCCEEEEECTTHHHHT-T--HHHHHHHHHHTCCEEEEEEESCGGG-T-TTTCTTCCCCHHHHHTTCSEEEECCSG--GG
T ss_pred             ccCcceeeccccccccc-h--hHhHHHHHHhCccceeecccchhhH-h-hcCcccccccccchhhhcceeeccccc--hh
Confidence            344555544  445544 3  6789999999999999997654111 1 111112235556666665556677644  48


Q ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          301 VREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       301 v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      +.+.+++|+..+..++||+.|++-.
T Consensus       139 ~~~~~~~A~~~a~~~rGPv~i~iP~  163 (184)
T d2djia2         139 LPKLVDEAARMAIAKRGVAVLEVPG  163 (184)
T ss_dssp             HHHHHHHHHHHHHHTTSEEEEEEET
T ss_pred             hHHHHHHHHHHHhCCCCCEEEEeCc
Confidence            8889999999999888999999954

>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate oxidase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.41  E-value=0.0054  Score=51.53  Aligned_cols=93  Identities=16%  Similarity=0.097  Sum_probs=60.5

Q ss_pred             ceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCc-ccccccccccCCcchhhccccCCccEEEEeCCCHHHHHH
Q 018048          225 HVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLW-AIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVRE  303 (361)
Q Consensus       225 ~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y-~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~  303 (361)
                      .++++..|=|..+.   ...|..|...+.|+|+|.-+..- ..+.   ......|...+.+.+--...+|...+  ++.+
T Consensus        69 gv~~~t~GpG~~N~---~~gl~~A~~~~~P~l~i~g~~~~~~~~~---~~~Q~~d~~~~~~~itk~~~~v~~~~--~~~~  140 (174)
T d2ez9a2          69 GVCFGSAGPGGTHL---MNGLYDAREDHVPVLALIGQFGTTGMNM---DTFQEMNENPIYADVADYNVTAVNAA--TLPH  140 (174)
T ss_dssp             EEEEECTTHHHHTT---HHHHHHHHHTTCCEEEEEEECCTTTTTS---CCTTCCCCHHHHTTTCSEEEECCCST--THHH
T ss_pred             eEEeecccccccch---hhhHHHHHhcCccceeeeccccccccCc---cccccchhhhhhccccccccccccHH--HHHH
Confidence            33444445555553   67899999999999999876541 1111   11112344555555544456776554  7777


Q ss_pred             HHHHHHHHHHcCCCCEEEEEEE
Q 018048          304 VAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       304 al~~Al~~ar~~~gP~lIev~t  325 (361)
                      .+++|++.+....||+.|++-.
T Consensus       141 ~i~~A~~~A~~~pGPv~l~iP~  162 (174)
T d2ez9a2         141 VIDEAIRRAYAHQGVAVVQIPV  162 (174)
T ss_dssp             HHHHHHHHHHHHTSEEEEEEET
T ss_pred             HHHHHHHHHhCCCCCEEEEeCc
Confidence            8899999888778999999954

>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Catabolic acetolactate synthase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.25  E-value=0.0066  Score=51.29  Aligned_cols=95  Identities=18%  Similarity=0.134  Sum_probs=64.1

Q ss_pred             CceEEEEE--CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          224 DHVTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       224 ~~~Vv~~~--GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      +++.+|++  |=|..+ .  ...|..|...+.|+|+|.-+.....  .........|...+.+.+--...+|...+  ++
T Consensus        66 g~~gv~~~t~GpG~~n-~--~~gi~~A~~~~~Pvl~isg~~~~~~--~~~~~~q~~d~~~~~~~~tk~~~~v~~~~--~~  138 (181)
T d1ozha2          66 GKAGVALVTSGPGCSN-L--ITGMATANSEGDPVVALGGAVKRAD--KAKQVHQSMDTVAMFSPVTKYAIEVTAPD--AL  138 (181)
T ss_dssp             SSCEEEEECSTHHHHT-T--HHHHHHHHHHTCCEEEEEEECCTTT--C------CCCHHHHHGGGCSEEEECCSGG--GH
T ss_pred             CCccceeeccchhhhh-h--hhhHHHHhhcCCceeeeecccchhh--ccccccccccccccccccchheeccCchh--HH
Confidence            34444444  444444 2  6789999999999999998765211  11111223566777777777777886544  88


Q ss_pred             HHHHHHHHHHHHcCC-CCEEEEEEE
Q 018048          302 REVAKEAIERARRGE-GPTLVECET  325 (361)
Q Consensus       302 ~~al~~Al~~ar~~~-gP~lIev~t  325 (361)
                      .+.+++|++.+..++ ||+.|++-.
T Consensus       139 ~~~l~~A~~~A~~~~~GPV~l~iP~  163 (181)
T d1ozha2         139 AEVVSNAFRAAEQGRPGSAFVSLPQ  163 (181)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             HHHHHHHHHHHhhCCCccEEEEcCh
Confidence            888999999998875 799999964

>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.012  Score=49.23  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             CceEEEEE--CCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHH
Q 018048          224 DHVTLAFF--GDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKV  301 (361)
Q Consensus       224 ~~~Vv~~~--GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v  301 (361)
                      +++.+|++  |=|..+ .  ...|..|...++|+|+|+-+..-..  .........|..++++.+--...+|+..+  ++
T Consensus        66 g~~~v~~~t~GpG~~n-~--~~gl~~A~~~~~Pvl~i~g~~~~~~--~~~~~~q~~d~~~l~~~~tk~~~~v~~~~--~~  138 (175)
T d1t9ba2          66 GKPGVVLVTSGPGATN-V--VTPMADAFADGIPMVVFTGQVPTSA--IGTDAFQEADVVGISRSCTKWNVMVKSVE--EL  138 (175)
T ss_dssp             SSCEEEEECSTHHHHT-T--HHHHHHHHHHTCCEEEEEEECCTTT--TTSCCTTCCCHHHHTGGGSSEEEECCSGG--GH
T ss_pred             CCceEEEEecCcHHHH-H--HHHHHHHHHcCCCEEEEecCCChhh--cCCCccccccHhHhcccceeeeEecCCHH--HH
Confidence            34444444  444444 3  7789999999999999997654111  01111223466777777755566776554  77


Q ss_pred             HHHHHHHHHHHHcC-CCCEEEEEEE
Q 018048          302 REVAKEAIERARRG-EGPTLVECET  325 (361)
Q Consensus       302 ~~al~~Al~~ar~~-~gP~lIev~t  325 (361)
                      .+.+++|++.++.. .||+.|++-.
T Consensus       139 ~~~l~~A~~~a~~~~~GPv~l~iP~  163 (175)
T d1t9ba2         139 PLRINEAFEIATSGRPGPVLVDLPK  163 (175)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             HHHHHHHHHHHhcCCCccEEEEcCh
Confidence            78899999999986 4799999854

>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=96.03  E-value=0.0056  Score=52.00  Aligned_cols=109  Identities=15%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccccccccCCcch
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQI  279 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~~~q~~~~d~  279 (361)
                      .-+|.|.+.+.          +.-.++++..|=|..+ .  ...|..|...+.|+|+|.-+-.-. .+. .+......|.
T Consensus        54 ~~~A~gyar~t----------g~~~v~~~t~GpG~~n-~--~~gl~~A~~~~~Pvl~i~g~~~~~~~~~-~~~~~q~~d~  119 (188)
T d2ji7a2          54 GYAASIAGYIE----------GKPGVCLTVSAPGFLN-G--VTSLAHATTNCFPMILLSGSSEREIVDL-QQGDYEEMDQ  119 (188)
T ss_dssp             HHHHHHHHHHH----------SSCEEEEECSHHHHHH-H--HHHHHHHHHHTCCEEEEEEECCHHHHHT-TCCCTTCCCH
T ss_pred             hhHHHHHHhhh----------cccceeeccccccccc-c--chhHHHHHHhcccceEEeccCchhhhcc-cccccceeee
Confidence            34566666652          2233334444555444 2  667999999999999998643311 111 1111223466


Q ss_pred             hhccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCC-CCEEEEEEE
Q 018048          280 YKKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGE-GPTLVECET  325 (361)
Q Consensus       280 ~~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~-gP~lIev~t  325 (361)
                      ..+.+.+--...+|...+  ++.+.+++|++.+..++ ||+.|++-.
T Consensus       120 ~~~~~~~tk~~~~v~~~~--~i~~~~~~A~~~a~~~~~GPV~l~iP~  164 (188)
T d2ji7a2         120 MNVARPHCKASFRINSIK--DIPIGIARAVRTAVSGRPGGVYVDLPA  164 (188)
T ss_dssp             HHHTGGGSSEEEECCSGG--GHHHHHHHHHHHHHSSSCCEEEEEEEH
T ss_pred             ecccCCcchhhhcccccc--ccHHHHHHHHHHHhCCCCceEEEEcCh
Confidence            677777766677886544  88888999999998866 799999853

>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0075  Score=50.69  Aligned_cols=95  Identities=7%  Similarity=0.034  Sum_probs=57.8

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc-cc--ccccccC---CcchhhccccCCccEEEEeCCCHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI-GM--SHLRATS---DPQIYKKGPAFGMPGFHVDGMDVL  299 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i-s~--~~~~q~~---~~d~~~~A~a~Gi~~~~Vdg~D~~  299 (361)
                      .+++..|=|..+ .  ...|..|...++|+|+|+-++.... +.  ..+.+..   ..++.++.+.+--...++...+  
T Consensus        68 ~v~~t~GpG~~N-~--~~gl~~A~~~~~P~l~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~--  142 (180)
T d1pvda2          68 CIITTFGVGELS-A--LNGIAGSYAEHVGVLHVVGVPSISSQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIA--  142 (180)
T ss_dssp             EEEEETTHHHHH-H--HHHHHHHHHHTCCEEEEEEECCCC--------CCSCSSSCSSHHHHHHGGGCSEEEECCCTT--
T ss_pred             eeeeccccccch-h--hHHHHHHHhhcccEEEEeccCCcccccccceeeecccccchhHHHHHhhhheeEEEEcCCHH--
Confidence            444445666544 2  6688999999999999986543211 11  0011111   1233445555434445665444  


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEEE
Q 018048          300 KVREVAKEAIERARRGEGPTLVECET  325 (361)
Q Consensus       300 ~v~~al~~Al~~ar~~~gP~lIev~t  325 (361)
                      ++.+.+++|++.+...+||+.|++-.
T Consensus       143 ~~~~~i~~A~~~a~~~~gPv~i~iP~  168 (180)
T d1pvda2         143 TAPAEIDRCIRTTYVTQRPVYLGLPA  168 (180)
T ss_dssp             THHHHHHHHHHHHHHHTSCEEEEEET
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            77778888988888888999999953

>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=95.95  E-value=0.011  Score=49.73  Aligned_cols=97  Identities=15%  Similarity=0.109  Sum_probs=63.8

Q ss_pred             CceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcc-cccccccccCCcchhhccccCCccEEEEeCCCHHHHH
Q 018048          224 DHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWA-IGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVR  302 (361)
Q Consensus       224 ~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~-is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~  302 (361)
                      -.++++..|=|..+.   ...|..|...+.|+|+|.-+-... .+.  .......|...+.+.+--...+|.  ++.++.
T Consensus        63 ~~v~~~~~GpG~~n~---~~gl~~A~~~~~Pvlvi~g~~~~~~~g~--~~~~q~~D~~~~~~~~tK~~~~v~--~~~~i~  135 (180)
T d1q6za2          63 PAFINLHSAAGTGNA---MGALSNAWNSHSPLIVTAGQQTRAMIGV--EALLTNVDAANLPRPLVKWSYEPA--SAAEVP  135 (180)
T ss_dssp             CEEEEEEHHHHHHHT---HHHHHHHHHTTCCEEEEEEECCHHHHTT--TCTTCCTTGGGSSTTSCSCEECCS--SGGGHH
T ss_pred             cceEEeccccccccc---cceeHhhhhcccceeeeccccccccccc--cccchhhheeecccccccccccCC--CHHHHH
Confidence            345555556666653   568999999999999998764411 121  111123455666665533455665  445888


Q ss_pred             HHHHHHHHHHHcC-CCCEEEEEEEec
Q 018048          303 EVAKEAIERARRG-EGPTLVECETYR  327 (361)
Q Consensus       303 ~al~~Al~~ar~~-~gP~lIev~t~R  327 (361)
                      +.+++|++.++.+ .||+.|++-.+-
T Consensus       136 ~~l~~A~~~a~~~~~GPv~l~iP~D~  161 (180)
T d1q6za2         136 HAMSRAIHMASMAPQGPVYLSVPYDD  161 (180)
T ss_dssp             HHHHHHHHHHHSSSCCCEEEEEEGGG
T ss_pred             HHHHHHHHHHhcCCCccEEEEcChhH
Confidence            8999999999876 479999997543

>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=95.70  E-value=0.018  Score=49.11  Aligned_cols=94  Identities=21%  Similarity=0.249  Sum_probs=62.0

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchhhccccCCccEEEEeCCCHHHHHHHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIYKKGPAFGMPGFHVDGMDVLKVREVA  305 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~~~A~a~Gi~~~~Vdg~D~~~v~~al  305 (361)
                      ++++..|=|..+.   ...|..|...+.|+|+|.-+.....  .........|...+.+.+--...+|...+  ++.+.+
T Consensus        78 v~~~t~GpG~~N~---~~gl~~A~~~~~Pvlvi~g~~~~~~--~~~~~~q~~d~~~~~~~~tk~~~~v~~~~--~~~~~~  150 (195)
T d1ybha2          78 ICIATSGPGATNL---VSGLADALLDSVPLVAITGQVPRRM--IGTDAFQETPIVEVTRSITKHNYLVMDVE--DIPRII  150 (195)
T ss_dssp             EEEECTTHHHHTT---HHHHHHHHHHTCCEEEEEEECCGGG--TTTTCTTCCCHHHHHGGGSSEEEECCCGG--GHHHHH
T ss_pred             EEEEecChHHHHH---HHHHHHHHHcCCCEEEEecCCcHHH--hccCcccccchhhhhcccccchhhcchHh--hcchHH
Confidence            3344445555552   6689999999999999987654211  11112223455556666555556665444  888899


Q ss_pred             HHHHHHHHcC-CCCEEEEEEEe
Q 018048          306 KEAIERARRG-EGPTLVECETY  326 (361)
Q Consensus       306 ~~Al~~ar~~-~gP~lIev~t~  326 (361)
                      ++|+..++.+ .||+.|++-.+
T Consensus       151 ~~A~~~a~~~r~GPV~l~iP~D  172 (195)
T d1ybha2         151 EEAFFLATSGRPGPVLVDVPKD  172 (195)
T ss_dssp             HHHHHHHHSSSCCEEEEEEEHH
T ss_pred             HHHHHHHhcCCCCcEEEECChH
Confidence            9999999886 48999999654

>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Pyruvate oxidase and decarboxylase Pyr module
domain: Indole-3-pyruvate decarboxylase
species: Enterobacter cloacae [TaxId: 550]

Probab=92.87  E-value=0.14  Score=42.27  Aligned_cols=93  Identities=13%  Similarity=0.137  Sum_probs=53.9

Q ss_pred             eEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCccc---cccccc---ccCCcchhhccccCCccEEEEeCCCHH
Q 018048          226 VTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAI---GMSHLR---ATSDPQIYKKGPAFGMPGFHVDGMDVL  299 (361)
Q Consensus       226 ~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~i---s~~~~~---q~~~~d~~~~A~a~Gi~~~~Vdg~D~~  299 (361)
                      .|++..|=|..+ .  ...|..|...++|+|+|.-......   +.....   .....++..+.+.+--....++..+  
T Consensus        68 ~v~~t~GpG~~n-~--~~gl~~A~~~~~Pvl~isg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~--  142 (178)
T d1ovma2          68 ALLTTFGVGELS-A--MNGIAGSYAEHVPVLHIVGAPGTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQN--  142 (178)
T ss_dssp             EEEEETTHHHHH-T--HHHHHHHHHTTCCEEEEEEECCHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTT--
T ss_pred             eEEeeccccccc-c--chhhhHHHhcCccEEEEecCCCchhhccccccccccccchhhhccccccccceeEEEeCcHH--
Confidence            344445655554 2  6789999999999999986543111   100000   1112345566666655566776655  


Q ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEE
Q 018048          300 KVREVAKEAIERARRGEGPTLVECE  324 (361)
Q Consensus       300 ~v~~al~~Al~~ar~~~gP~lIev~  324 (361)
                      ++.+. .+++..+...++|+.|++-
T Consensus       143 ~~~~~-~~~~~~a~~~~~Pv~i~iP  166 (178)
T d1ovma2         143 ACYEI-DRVLTTMLRERRPGYLMLP  166 (178)
T ss_dssp             HHHHH-HHHHHHHHHHTCCEEEEEE
T ss_pred             HHHHH-HHHHHHHHhCCCCEEEEEC
Confidence            55543 3444445555789999874

>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: PFOR Pyr module
domain: Pyruvate-ferredoxin oxidoreductase, PFOR, domain I
species: Desulfovibrio africanus [TaxId: 873]

Probab=91.20  E-value=0.48  Score=41.56  Aligned_cols=114  Identities=18%  Similarity=0.097  Sum_probs=72.8

Q ss_pred             cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccccCCcchh
Q 018048          201 IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPQIY  280 (361)
Q Consensus       201 lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q~~~~d~~  280 (361)
                      +.+++|++++             +.++.+.+.-.++..-  .|.|.++.-.++|++++|.+-.+.- ++...+....|+.
T Consensus        67 ~~~~~Ga~~a-------------G~r~~t~ts~~Gl~~m--~e~l~~a~~~~~P~V~~v~~r~~~~-~~~~~~~~q~d~~  130 (257)
T d2c42a1          67 AGAVHGALAA-------------GALTTTFTASQGLLLM--IPNMYKISGELLPGVFHVTARAIAA-HALSIFGDHQDIY  130 (257)
T ss_dssp             HHHHHHHHHT-------------TCCEEEEECHHHHHHH--HHHHHHHHHTTCCCEEEEEECCCCS-SSBCCSCCSHHHH
T ss_pred             HHHHHHHHhc-------------CCCeEEEecchHHHHH--HHHHHHHHhcCCceEEEEEecCCCC-CCCccccchHHHH
Confidence            5678888876             4445555544444432  7889999999999777777654221 1111111122322


Q ss_pred             hccccCCccEEEEeCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEecCCCCCCC
Q 018048          281 KKGPAFGMPGFHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLA  334 (361)
Q Consensus       281 ~~A~a~Gi~~~~Vdg~D~~~v~~al~~Al~~ar~~~gP~lIev~t~R~~gHs~~  334 (361)
                       .++-.|++.  +...++.+.++-...|.+-+.+...|+++-...+|. +|...
T Consensus       131 -~~~~~g~~~--l~~~s~QEa~d~~~~A~~lae~~~~Pv~~~~Dg~~~-sh~~~  180 (257)
T d2c42a1         131 -AARQTGFAM--LASSSVQEAHDMALVAHLAAIESNVPFMHFFDGFRT-SHEIQ  180 (257)
T ss_dssp             -TTTTSSCEE--EECCSHHHHHHHHHHHHHHHHHHCCCEEEEEETTTT-TTCEE
T ss_pred             -HHHhcceEE--EecCCHHHHHHHHHHHHHHHHHhCCCEEEEeccchh-cCCcC
Confidence             344556655  456778899988888998888888899988766664 56543

>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]}

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: TK-like Pyr module
domain: Transketolase (TK), Pyr module
species: Leishmania mexicana mexicana [TaxId: 44270]

Probab=81.99  E-value=2.8  Score=34.82  Aligned_cols=108  Identities=15%  Similarity=0.090  Sum_probs=60.9

Q ss_pred             cccccc-cHHHHHHHHHHHHHHhhhhhcCCCceEEEEECCCcccCcchHHHHHHhhhCCCCeEEEEEcCCcccccccccc
Q 018048          195 AFIGEG-IPVATGAAFTSKYRREVLKEADCDHVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA  273 (361)
Q Consensus       195 g~mG~~-lP~AiGaA~A~k~~~~~~~~~~~~~~Vv~~~GDGs~~~g~~~eeL~tA~~~~LPvi~VV~NN~y~is~~~~~q  273 (361)
                      |.-.+. +..|.|.++.           +.-.++++++  ..|. ....+.+..++..++||++|...-++.++..-...
T Consensus        70 GIaEqnm~~iAaGla~~-----------~g~~p~~~t~--~~F~-~r~~~~ir~~~~~~~~v~~v~~~~g~~~g~dG~TH  135 (190)
T d1r9ja1          70 GVREHAMCAILNGLDAH-----------DGIIPFGGTF--LNFI-GYALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH  135 (190)
T ss_dssp             CSCHHHHHHHHHHHHHH-----------SSCEEEEEEE--GGGG-GGGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT
T ss_pred             ccchhhHHHHHHHHHHc-----------CCcceEEecc--hhhh-ccchHHHHHhcccCCceEEEEecCccccCCCCcch
Confidence            333433 4556666654           2334444444  2333 23377888888999999999888886665433333


Q ss_pred             cCCcchhhccccCCccEEEEe-CCCHHHHHHHHHHHHHHHH-cCCCCEEEEE
Q 018048          274 TSDPQIYKKGPAFGMPGFHVD-GMDVLKVREVAKEAIERAR-RGEGPTLVEC  323 (361)
Q Consensus       274 ~~~~d~~~~A~a~Gi~~~~Vd-g~D~~~v~~al~~Al~~ar-~~~gP~lIev  323 (361)
                      ....|++-+-   .+|.+.|- -.|..++    +.+++++. ..++|+.|-.
T Consensus       136 q~ieDla~~R---~iPn~~V~~PaD~~E~----~~al~~a~~~~~gP~yiRl  180 (190)
T d1r9ja1         136 QPVELVAALR---AMPNLQVIRPSDQTET----SGAWAVALSSIHTPTVLCL  180 (190)
T ss_dssp             CCSSHHHHHH---HSTTCEEECCSSHHHH----HHHHHHHHHCTTCCEEEEC
T ss_pred             hHHHHHHHHH---hcCCEEEEecCCHHHH----HHHHHHHHHcCCCCEEEEe
Confidence            3344544332   34555443 3454444    45555554 4679998754