Citrus Sinensis ID: 018049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERKGDLKIF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHHHccHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccHHccccccccHHHccccHHHHHcccccccccccccccccccccEEEEEccccccHHHHHcccHHHHccccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
msdgggesgskhqqphtkrkfsgddFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANlsgraegnvFDIFQGLedlgldqgfsgasdinhclasSGIVRELIQYANeatdvpfayaiphfpvvkdrkpkssflqigeeppiedipawlpafpdpqtyfespsqnerasdsytEKIELGKQQRKMEMSMVNLQrqfsesgpssfvhgdsskekktvesnpflsaplhfeekevssvvlpaklskevalqnpvakkhvVDNHISVMETFAPALEAMKNRFCESREEqkniqldqrppvqfkigvgkkslvkplksspqnmdggkidpwfckenenderkgdlkif
Flexible Loop (DISEMBL)
msdgggesgskhqqphtkrkfsgDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESpsqnerasdsytEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHgdsskekktvESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFCESREEqkniqldqrppvQFKIgvgkkslvkplksspqnmdggkidpwfckenenderkgdlkif
Low Complexity Region (SEG)
MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFCESREEQKNIQLDQRPPVQFKIgvgkkslvkplksspQNMDGGKIDPWFCKENENDERKGDLKIF
Disordered region (IsUnstruct)
*************************FSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD******FLQI*****IEDIPAWLPAF***********************************************************************************VVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAM***************************************************WF****************
Disordered Region (DISOPRED)
****************************AIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGA**********************ATDVPFAYAIPHFP***********************PAWLPAFPDPQTYF************************************************************************************************************************************************************************************DLKIF
Disordered Region (DISEMBL)
*********************SGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYF************YTEKIELGKQQRKMEMSMVNLQR**********************ESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERKGDLKIF
Disordered Region (DISPRO)
********************FSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD****SSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQ*ERASDSYTEKIELGKQQRKMEMSMVNLQRQFS**************************************************************NHISVMETFAPALEAMK**************LDQRPPVQFKIGVGKKSLVKPLKSSPQ********PWFC******ERKGDL*IF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERKGDLKIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q5HZG4	932	Transcription initiation	yes	no	0.282	0.109	0.275	7e-10
Q5F489	930	Transcription initiation	yes	no	0.282	0.109	0.283	1e-09
Q5VWG9	929	Transcription initiation	yes	no	0.282	0.109	0.275	1e-09
Q9EQH4	308	Transcription initiation	no	no	0.587	0.688	0.218	2e-08
A7MAZ4	310	Transcription initiation	no	no	0.501	0.583	0.221	5e-08
Q7Z7C8	310	Transcription initiation	no	no	0.495	0.577	0.223	5e-08
Q7ZYA2	293	Transcription initiation	N/A	no	0.512	0.631	0.218	1e-07
Q28J24	293	Transcription initiation	no	no	0.509	0.627	0.235	3e-07
Q6P0T2	308	Transcription initiation	no	no	0.448	0.525	0.241	1e-05
Q9VWY6	328	Transcription initiation	yes	no	0.470	0.518	0.230	3e-05

>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus GN=Taf3 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 18/120 (15%)

Query: 24  DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
           + +S+++ +V+VAQIC+ +G+ + Q SA   L D+  RY+  +G+  + Y+ L GR +  
Sbjct: 3   ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62

Query: 84  VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
           + D+ +  + +G++                  + EL  Y +    V F + IP FPV K+
Sbjct: 63  LDDVGEAFQLMGVN------------------LHELEDYIHNIEPVTFPHQIPSFPVSKN 104

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Required in complex with TBPL2 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process.
Mus musculus (taxid: 10090)

>sp|Q5F489|TAF3_CHICK Transcription initiation factor TFIID subunit 3 OS=Gallus gallus GN=TAF3 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 18/120 (15%)

Query: 24  DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
           + +S+ + +V+VAQIC+ +G+ + Q SA   L D+  RY+  +G+  + Y  L GR +  
Sbjct: 3   ETYSRWLLRVSVAQICQALGWDSVQVSACDLLTDVLQRYLQGLGRGCHRYCELYGRTDPI 62

Query: 84  VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
           + D+    + +G++                  + EL  Y +    V FA+ IP FPV K+
Sbjct: 63  LDDVGDAFKLMGVN------------------LHELEDYIHNIEPVTFAHQIPSFPVSKN 104

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Required in complex with TBPL2 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process.

Gallus gallus (taxid: 9031)

>sp|Q5VWG9|TAF3_HUMAN Transcription initiation factor TFIID subunit 3 OS=Homo sapiens GN=TAF3 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 18/120 (15%)

Query: 24  DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
           + +S+++ +V+VAQIC+ +G+ + Q SA   L D+  RY+  +G+  + Y+ L GR +  
Sbjct: 3   ESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRGCHRYSELYGRTDPI 62

Query: 84  VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
           + D+ +  + +G+                   + EL  Y +    V F + IP FPV K+
Sbjct: 63  LDDVGEAFQLMGVS------------------LHELEDYIHNIEPVTFPHQIPSFPVSKN 104

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors. Required in complex with TBPL2 for the differentiation of myoblasts into myocytes. The complex replaces TFIID at specific promoters at an early stage in the differentiation process.

Homo sapiens (taxid: 9606)

>sp|Q9EQH4|TAF8_MOUSE Transcription initiation factor TFIID subunit 8 OS=Mus musculus GN=Taf8 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 107/243 (44%), Gaps = 31/243 (12%)

Query: 1   MSDGGGESGSKHQQPHTKRKFS-GDDFSQA---IAKVAVAQICERVGFQTFQQSALGKLA 56
           M+D     G    +P +K+  +  D++  A     +V V+ +    GF++ +++++  L 
Sbjct: 1   MADTAAGPGGSGTRPGSKQSTNPADNYHLARRRTLQVVVSSLLTEAGFESAEKASVETLT 60

Query: 57  DIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIV 116
           ++   YI+ +G++A  Y   + R +  + DI   L ++G +        ++   A +   
Sbjct: 61  EMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTLVEMGFN--------VDTLPAYAKRS 112

Query: 117 RELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGE-EPPIEDIPAWLPAFPDPQTY 175
           + ++  A   T+ P               PK+  L  G+  P    IP+  P FPDP TY
Sbjct: 113 QRMVITAPPVTNQPVT-------------PKA--LTAGQNRPHPPHIPSHFPEFPDPHTY 157

Query: 176 FESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGDSSKEKKTVES 235
            ++P+  E  SD    + +   Q+R +E +   L R  +++G +  +  D       + +
Sbjct: 158 IKTPTYREPVSDYQILREKAASQRRDVERA---LTRFMAKTGETQSLFKDDVSTFPLIAA 214

Query: 236 NPF 238
            PF
Sbjct: 215 RPF 217

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however does not seem to play a role in differentiation of myoblasts. Required for the integration of TAF10 in the TAF complex (By similarity). May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.

Mus musculus (taxid: 10090)

>sp|A7MAZ4|TAF8_BOVIN Transcription initiation factor TFIID subunit 8 OS=Bos taurus GN=TAF8 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 93/208 (44%), Gaps = 27/208 (12%)

Query: 32  KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
           +V V+ +    GF++ +++++  L ++   YI+ +G++A  Y   + R +  + DI   L
Sbjct: 38  QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97

Query: 92  EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFL 151
            ++G +        ++   A +   + ++  A   T+ P               PK+  L
Sbjct: 98  VEMGFN--------VDTLPAYAKRSQRMVITAPPVTNQPVT-------------PKA--L 134

Query: 152 QIGE-EPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ 210
             G+  P    IP+  P FPDP TY ++P+  E  SD    + +   Q+R +E +   L 
Sbjct: 135 TAGQNRPHPPHIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LT 191

Query: 211 RQFSESGPSSFVHGDSSKEKKTVESNPF 238
           R  +++G +  +  D       + + PF
Sbjct: 192 RFMAKTGETQSLFKDDVSTFPLIAARPF 219

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however, does not seem to play a role in differentiation of myoblasts. Required for the integration of TAF10 in the TAF complex. May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.

Bos taurus (taxid: 9913)

>sp|Q7Z7C8|TAF8_HUMAN Transcription initiation factor TFIID subunit 8 OS=Homo sapiens GN=TAF8 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 94/210 (44%), Gaps = 31/210 (14%)

Query: 32  KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
           +V V+ +    GF++ +++++  L ++   YI+ +G++A  Y   + R +  + DI   L
Sbjct: 38  QVVVSSLLTEAGFESAEKASVETLTEMLQSYISEIGRSAKSYCEHTARTQPTLSDIVVTL 97

Query: 92  EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFL 151
            ++G +        ++   A +   + ++  A   T+ P               PK+  L
Sbjct: 98  VEMGFN--------VDTLPAYAKRSQRMVITAPPVTNQPVT-------------PKA--L 134

Query: 152 QIGE---EPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVN 208
             G+    PP   IP+  P FPDP TY ++P+  E  SD    + +   Q+R +E +   
Sbjct: 135 TAGQNRPHPP--HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA--- 189

Query: 209 LQRQFSESGPSSFVHGDSSKEKKTVESNPF 238
           L R  +++G +  +  D       + + PF
Sbjct: 190 LTRFMAKTGETQSLFKDDVSTFPLIAARPF 219

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription. Plays a role in the differentiation of preadipocyte fibroblasts to adipocytes, however, does not seem to play a role in differentiation of myoblasts. Required for the integration of TAF10 in the TAF complex. May be important for survival of cells of the inner cell mass which constitute the pluripotent cell population of the early embryo.

Homo sapiens (taxid: 9606)

>sp|Q7ZYA2|TAF8_XENLA Transcription initiation factor TFIID subunit 8 OS=Xenopus laevis GN=taf8 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/211 (21%), Positives = 93/211 (44%), Gaps = 26/211 (12%)

Query: 32  KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
           +V V+ +    GF + +++A+  L ++   Y++ +G++A  Y   + R +  + DI   L
Sbjct: 28  QVVVSSLLTEAGFDSAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTL 87

Query: 92  EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFL 151
            ++G +        ++   A +   + ++  A   T+ P    +P      D KP  +  
Sbjct: 88  IEMGFN--------VDSLPAYAKRSQRMVITAPPVTNNP---VVPKALSAGDNKPHPAH- 135

Query: 152 QIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQR 211
                     IP+  P FPDP TY ++P+  E   D    + +   Q+R +E +   L R
Sbjct: 136 ----------IPSHFPEFPDPHTYIKTPTYREPVCDYQVLREKAASQRRDVERA---LTR 182

Query: 212 QFSESGPSSFVHGDSSKEKKTVESNPFLSAP 242
             +++G +  +  D +     + + P LS P
Sbjct: 183 FMAKTGETQSLFKDDTSTFPLIAARP-LSIP 212

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription.

Xenopus laevis (taxid: 8355)

>sp|Q28J24|TAF8_XENTR Transcription initiation factor TFIID subunit 8 OS=Xenopus tropicalis GN=taf8 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 28/212 (13%)

Query: 32  KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
           +V V+ +    GF++ +++A+  L ++   Y++ +G++A  Y   + R +  + DI   L
Sbjct: 28  QVVVSSLLTEAGFESAEKAAVESLTEMLQSYLSEIGRSAKSYCEHTARTQPTLPDIVVTL 87

Query: 92  EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATD-VPFAYAIPHFPVVKDRKPKSSF 150
            ++G +                  V  L  YA  +   V  A  + + PVV    PK+  
Sbjct: 88  IEMGFN------------------VESLPAYAKRSQRMVITAPPVTNNPVV----PKALS 125

Query: 151 LQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ 210
               ++ P   IP+  P FPDP TY ++P+  E   D    + +   Q+R +E +   L 
Sbjct: 126 AGQNKQHPAH-IPSHFPEFPDPHTYIKTPTYREPVCDYQVLREKAASQRRDVERA---LT 181

Query: 211 RQFSESGPSSFVHGDSSKEKKTVESNPFLSAP 242
           R  +++G +  +  D +     + + P LS P
Sbjct: 182 RFMAKTGETQSLFKDDTSTFPLIAARP-LSIP 212

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription.

Xenopus tropicalis (taxid: 8364)

>sp|Q6P0T2|TAF8_DANRE Transcription initiation factor TFIID subunit 8 OS=Danio rerio GN=taf8 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 24/186 (12%)

Query: 32  KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL 91
           +V V+ +    GF + +++ +  L ++   YI  VG+ A      + R+   + D+   L
Sbjct: 40  QVVVSALLTECGFDSAEKAVVETLTEMMQSYITEVGRCAKANCEHTARSTPTLSDVVITL 99

Query: 92  EDLGLDQGFSGASDINHCLASSGIVRELIQYANEATD-VPFAYAIPHFPVVKDRKPKSSF 150
            ++G +                  V  L  YA  +   V  A  I + PVV    PKS  
Sbjct: 100 VEMGFN------------------VDTLPVYAKRSQRMVITAPPITNAPVV----PKSLT 137

Query: 151 LQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ 210
                  P   IP+  P FPDP TY  +P+  E  SD    + +   Q+R +E ++    
Sbjct: 138 AGQKRTHPAH-IPSHFPDFPDPHTYIRTPTFREPVSDYQVVREKAASQRRDVERALTRFM 196

Query: 211 RQFSES 216
            +  E+
Sbjct: 197 AKTGET 202

Transcription factor TFIID is one of the general factors required for accurate and regulated initiation by RNA polymerase II. Mediates both basal and activator-dependent transcription.

Danio rerio (taxid: 7955)

>sp|Q9VWY6|TAF8_DROME Transcription initiation factor TFIID subunit 8 OS=Drosophila melanogaster GN=Taf8 PE=1 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 81/195 (41%), Gaps = 25/195 (12%)

Query: 24  DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
           D + + + KV V+Q+    G       +L  L  +    I  +G +A+ Y  LSGR    
Sbjct: 13  DPYRRILNKV-VSQLLLDKGAGQASNHSLETLTQMLQALIWEIGNSAHNYCELSGRTMPT 71

Query: 84  VFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD 143
           V D+   L ++G+                   +  L  Y  + T VP    IP  P    
Sbjct: 72  VGDVSLALINMGIS------------------ISNLDPYMRKETHVP----IPLPPQQTQ 109

Query: 144 RKPKSSFLQIG-EEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKM 202
           ++P S  LQ G + P    +P++ P  PDP  Y  +P+  +  ++    + +   Q+R +
Sbjct: 110 QRPLS-LLQAGIKAPHPHYVPSYFPPMPDPHAYIRTPTHKQPVTEYEAIREKAACQKRDI 168

Query: 203 EMSMVNLQRQFSESG 217
           E ++     + +E+ 
Sbjct: 169 EKALTKFLCKTTETN 183

TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
224141083	382	predicted protein [Populus trichocarpa]	0.983	0.929	0.569	1e-115
225451729	377	PREDICTED: uncharacterized protein LOC10	0.980	0.938	0.581	1e-114
224077734	394	predicted protein [Populus trichocarpa]	0.975	0.893	0.571	1e-110
147864648	366	hypothetical protein VITISV_014912 [Viti	0.950	0.937	0.569	1e-109
296082209	357	unnamed protein product [Vitis vinifera]	0.925	0.935	0.558	1e-104
255573410	379	tbp-associated factor taf, putative [Ric	0.977	0.931	0.542	1e-103
356568768	381	PREDICTED: uncharacterized protein LOC10	0.977	0.926	0.509	5e-97
356526516	381	PREDICTED: uncharacterized protein LOC10	0.983	0.931	0.506	5e-94
449447663	376	PREDICTED: uncharacterized protein LOC10	0.972	0.933	0.516	2e-93
225440055	368	PREDICTED: uncharacterized protein LOC10	0.952	0.934	0.465	7e-89

>gi|224141083|ref|XP_002323904.1| predicted protein [Populus trichocarpa] gi|222866906|gb|EEF04037.1| predicted protein [Populus trichocarpa]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/362 (56%), Positives = 266/362 (73%), Gaps = 7/362 (1%)

Query: 1   MSDGGGESGSKHQQP----HTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLA 56
           MS GGGESG  H +       K + SGD+F++AIAK+AVAQ+CE VGFQ+FQQSAL KL+
Sbjct: 1   MSHGGGESGRLHDKAGDSGKRKSRVSGDEFTRAIAKIAVAQMCETVGFQSFQQSALEKLS 60

Query: 57  DIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIV 116
           D+   YI ++GK A FYANL+GR EGNVFD+ QG+E+LGL QGF+GAS+++HCLASSGIV
Sbjct: 61  DVTTWYIRNLGKTAQFYANLAGRTEGNVFDVIQGMEELGLSQGFAGASNVDHCLASSGIV 120

Query: 117 RELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYF 176
           RE++QY  +A D+PF Y+IP FPV ++RKP  SF QI EE P E IPAWLPAFPDPQT+ 
Sbjct: 121 REIVQYIGDAEDIPFVYSIPPFPVARERKPVPSFFQICEESPAEHIPAWLPAFPDPQTHV 180

Query: 177 ESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFS---ESGPSSFVHGDSSKEKKTV 233
           + P+ NE  +    +KIE  +   KM+MS +NL + F+     GPSS   G+S++  +  
Sbjct: 181 QLPAGNEGDAVFNADKIEPARHHLKMDMSSMNLPQHFTCNGSGGPSSVTFGNSARATQGT 240

Query: 234 ESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMK 293
           ESNPFL+APL F EKEVS +V PA+LS E A++ PV +  ++DNHISV+ETFAPA+EAMK
Sbjct: 241 ESNPFLAAPLQFGEKEVSHLVPPARLSDEAAVRYPVEQNRIMDNHISVLETFAPAIEAMK 300

Query: 294 NRFCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDE 353
           +RFC+S E QK + L+QRP VQFKI VGK SL      SPQ +   KI  WF K++END+
Sbjct: 301 SRFCDSEEGQKKVLLNQRPAVQFKIQVGKNSLAGAPDLSPQKIGIEKISKWFGKDSENDD 360

Query: 354 RK 355
           +K
Sbjct: 361 KK 362

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451729|ref|XP_002277032.1| PREDICTED: uncharacterized protein LOC100246447 [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 208/358 (58%), Positives = 257/358 (71%), Gaps = 4/358 (1%)

Query: 1   MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAV 60
           MSDGGGESG +  +  TKRK S  DF QAIAK+AVAQICE  GFQ FQQSAL  L+++ V
Sbjct: 1   MSDGGGESGRESDRA-TKRKSSDRDFPQAIAKIAVAQICESAGFQGFQQSALETLSEVVV 59

Query: 61  RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELI 120
           RYI  +GK A+ YAN + R E N+FDI QGLEDL   QGFSGASD +HCLA SG VRE++
Sbjct: 60  RYIRELGKTAHTYANSACRTECNIFDIIQGLEDLASLQGFSGASDSDHCLAGSGTVREIV 119

Query: 121 QYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPS 180
           QY +EA ++PFA+++PHFPV++DRK   SFLQIGEEPP + IP WLPAFPDPQTY  SP 
Sbjct: 120 QYVSEAEEIPFAHSVPHFPVIRDRKQTPSFLQIGEEPPGDHIPDWLPAFPDPQTYVHSPV 179

Query: 181 QNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSES---GPSSFVHGDSSKEKKTVESNP 237
            NER +D     IE  +Q +K E S++NLQ+Q + +   GPS    GD++K ++  E+NP
Sbjct: 180 LNERGADPCAGNIEQARQHKKAEWSLLNLQQQLACNGLEGPSMIDPGDAAKARRAAETNP 239

Query: 238 FLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFC 297
           FLSAPLHF EK VS V LPAKLS E  ++N   + H V NH+SV+ETFAPA+E MK+R C
Sbjct: 240 FLSAPLHFGEKGVSPVFLPAKLSNEAVVENQAGENHAVANHVSVLETFAPAIELMKSRSC 299

Query: 298 ESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERK 355
           ES E +K +  +QRP VQFKI +GKKS    L  S QN D  KI  WF K+NE D++K
Sbjct: 300 ESEEGRKKVLSNQRPAVQFKIEIGKKSTGTALDLSFQNKDVEKITSWFGKDNEKDDKK 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077734|ref|XP_002305385.1| predicted protein [Populus trichocarpa] gi|222848349|gb|EEE85896.1| predicted protein [Populus trichocarpa]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/359 (57%), Positives = 259/359 (72%), Gaps = 7/359 (1%)

Query: 4   GGGESGSKHQQ----PHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIA 59
           GGGESG  H++       K + SGD+F++AI K+AVAQ+CE +GFQ+FQQSAL  L D+ 
Sbjct: 16  GGGESGRLHEKVGHNGKRKSRASGDEFARAIGKIAVAQMCESMGFQSFQQSALETLTDVT 75

Query: 60  VRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVREL 119
             YI ++GKAA   ANL+GR EGNVFD+ QGLE+LGL QGF+GASD++HCLASSGIVRE+
Sbjct: 76  TWYIRNIGKAAQLCANLAGRTEGNVFDVIQGLEELGLPQGFAGASDVDHCLASSGIVREI 135

Query: 120 IQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESP 179
            QY  +A D+PFAY+IP FPV ++RKP  SF QIGEEPP E IPAWLPAFPDPQTY + P
Sbjct: 136 AQYIGDADDIPFAYSIPPFPVARERKPAPSFSQIGEEPPEEHIPAWLPAFPDPQTYAQLP 195

Query: 180 SQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFS---ESGPSSFVHGDSSKEKKTVESN 236
             NE  +D   + IE  +Q +KM++S +NL +QF+     GPSS   GDS+K  +   SN
Sbjct: 196 EGNEGRADLNADNIESVRQHQKMDVSYMNLPQQFNCNGSEGPSSVAFGDSAKATQRTVSN 255

Query: 237 PFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRF 296
           PFL+APL F  KEVS VV PAKLS E A++ PV +   +DN++SVM+TFAPA+EAMK+R 
Sbjct: 256 PFLAAPLQFGVKEVSHVVPPAKLSDEAAVRYPVEQTRTMDNNMSVMKTFAPAIEAMKSRL 315

Query: 297 CESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERK 355
           C+S E QK +  +QRP VQFKIGVGK SL      S QN    KI  W  K++END++K
Sbjct: 316 CDSGEGQKKVFFNQRPAVQFKIGVGKNSLDGAPDLSLQNKGIKKISMWSGKDSENDDQK 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147864648|emb|CAN79809.1| hypothetical protein VITISV_014912 [Vitis vinifera]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/358 (56%), Positives = 253/358 (70%), Gaps = 15/358 (4%)

Query: 1   MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAV 60
           MSDGGGESG +  +  TKRK S  DF QAIAK+AVAQICE  GFQ FQQSAL  L+++ V
Sbjct: 1   MSDGGGESGRESDRA-TKRKSSDRDFPQAIAKIAVAQICESAGFQGFQQSALETLSEVVV 59

Query: 61  RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELI 120
           RYI  +GK A+ YAN + R E N+FDI QGLEDL   QGFSGASD +HCLA SG VRE++
Sbjct: 60  RYIRELGKTAHTYANSACRTECNIFDIIQGLEDLASLQGFSGASDSDHCLAGSGTVREIV 119

Query: 121 QYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPS 180
           QY +EA ++PFA+++PHFPV++DRK   SFLQIGEEPP + IP WLPAFPDPQTY  SP 
Sbjct: 120 QYVSEAEEIPFAHSVPHFPVIRDRKQTPSFLQIGEEPPGDHIPDWLPAFPDPQTYVHSPV 179

Query: 181 QNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSES---GPSSFVHGDSSKEKKTVESNP 237
             E+A           +Q +K E S++NLQ+Q + +   GPS    GD++K ++  E+NP
Sbjct: 180 TLEQA-----------RQHKKAEWSLLNLQQQLACNGLEGPSMIDPGDAAKARRAAETNP 228

Query: 238 FLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFC 297
           FLSAPLHF EK VS V LPAKLS E  ++N   + H V NH+SV+ETFAPA+E MK+R C
Sbjct: 229 FLSAPLHFGEKGVSPVFLPAKLSNEAVVENQAGENHAVANHVSVLETFAPAIELMKSRSC 288

Query: 298 ESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERK 355
           ES E +K +  +QRP VQFKI +GKKS    L  S QN D  KI  WF K+NE D++K
Sbjct: 289 ESEEGRKKVLSNQRPAVQFKIEIGKKSTGTALDLSFQNKDVEKITSWFGKDNEKDDKK 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082209|emb|CBI21214.3| unnamed protein product [Vitis vinifera]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/358 (55%), Positives = 244/358 (68%), Gaps = 24/358 (6%)

Query: 1   MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAV 60
           MSDGGGESG +  +  TKRK S  DF QAIAK+AVAQICE  GFQ FQQSAL  L+++ V
Sbjct: 1   MSDGGGESGRESDRA-TKRKSSDRDFPQAIAKIAVAQICESAGFQGFQQSALETLSEVVV 59

Query: 61  RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELI 120
           RYI  +GK A+ YAN + R E N+FDI QGLEDL   QGFSGASD +HCLA SG VRE++
Sbjct: 60  RYIRELGKTAHTYANSACRTECNIFDIIQGLEDLASLQGFSGASDSDHCLAGSGTVREIV 119

Query: 121 QYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPS 180
           QY +EA ++PFA+++PHFPV++DRK   SFLQIGEEPP + IP WLPAFPDPQTY  SP 
Sbjct: 120 QYVSEAEEIPFAHSVPHFPVIRDRKQTPSFLQIGEEPPGDHIPDWLPAFPDPQTYVHSPV 179

Query: 181 QNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSES---GPSSFVHGDSSKEKKTVESNP 237
            NER +D     IE  +Q +K E S++NLQ+Q + +   GPS    GD++K ++  E+NP
Sbjct: 180 LNERGADPCAGNIEQARQHKKAEWSLLNLQQQLACNGLEGPSMIDPGDAAKARRAAETNP 239

Query: 238 FLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRFC 297
           FLSAPLHF EK VS V LPAKLS E                     TFAPA+E MK+R C
Sbjct: 240 FLSAPLHFGEKGVSPVFLPAKLSNEA--------------------TFAPAIELMKSRSC 279

Query: 298 ESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERK 355
           ES E +K +  +QRP VQFKI +GKKS    L  S QN D  KI  WF K+NE D++K
Sbjct: 280 ESEEGRKKVLSNQRPAVQFKIEIGKKSTGTALDLSFQNKDVEKITSWFGKDNEKDDKK 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573410|ref|XP_002527631.1| tbp-associated factor taf, putative [Ricinus communis] gi|223533005|gb|EEF34770.1| tbp-associated factor taf, putative [Ricinus communis]

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/361 (54%), Positives = 252/361 (69%), Gaps = 8/361 (2%)

Query: 1   MSDGGGESG---SKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLAD 57
           MS GGG+SG    K Q    K   SGD+F+++IAK+AVAQICE  GFQTFQQSAL  L+D
Sbjct: 1   MSHGGGQSGRVQEKSQLAKRKSGSSGDEFARSIAKIAVAQICECTGFQTFQQSALETLSD 60

Query: 58  IAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVR 117
           + VRYI ++GK A   AN +GR EGN FDI Q LE+L   QGF+ ASD++HC+ASSGIVR
Sbjct: 61  VTVRYICNLGKLAQGNANSAGRIEGNAFDIIQALEELCSSQGFASASDVDHCIASSGIVR 120

Query: 118 ELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFE 177
           ++ QY ++A DVPFAY+IP FP+V++RK    F QIGE+PP E IP WLPAFPDPQ Y +
Sbjct: 121 DIAQYVSDADDVPFAYSIPPFPIVRERKLAPIFSQIGEKPPWEHIPDWLPAFPDPQIYLQ 180

Query: 178 SPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSES---GPSSFVHGDSSKEKKTVE 234
           SP+ NE A+D   +K E  +   K++ S+  LQ+ F+ S   GPSS V     + K  VE
Sbjct: 181 SPTVNEGATDLNMQKFEPARLHPKIDRSL--LQQPFTSSGSQGPSSNVPAGGYEGKLIVE 238

Query: 235 SNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKN 294
            NPF++APL   EKEVS VV PAKLS E A++NP+    + DNH+SV+ TFAPA++AM +
Sbjct: 239 GNPFVAAPLQCGEKEVSHVVPPAKLSNETAVRNPIEHNRLADNHVSVLNTFAPAIKAMNS 298

Query: 295 RFCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDER 354
           R C+S E QK + L+QRP +QFKI +GKKSL   L+   QN    KI PW  K+NEND++
Sbjct: 299 RLCDSEEGQKKVLLNQRPAIQFKIAIGKKSLRTSLELGSQNKSAEKISPWSEKDNENDDK 358

Query: 355 K 355
           K
Sbjct: 359 K 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568768|ref|XP_003552582.1| PREDICTED: uncharacterized protein LOC100815889 [Glycine max]

 Score =  360 bits (924), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 185/363 (50%), Positives = 251/363 (69%), Gaps = 10/363 (2%)

Query: 1   MSDGGGESGSKHQQPHTKRKF---SGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLAD 57
           MS+GGG++G + +QP T R+     GDD+++AIAK+AVAQ+CE  GFQ FQQSAL  L+D
Sbjct: 1   MSNGGGKTGRQLEQPGTWRRRKVGGGDDYARAIAKIAVAQVCEGEGFQAFQQSALEALSD 60

Query: 58  IAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVR 117
           + VRYI +VGK+A+ +ANLSGR E N FD+ QGLED+G  QGF+GA+D++HCL SSG++R
Sbjct: 61  VVVRYILNVGKSAHCHANLSGRTECNAFDVIQGLEDMGSVQGFAGAADVDHCLESSGVIR 120

Query: 118 ELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFE 177
           E++ + N+A  V FA+ IP FPVVK+R P  SFLQ GEEPP E IPAWLPAFPDPQTY +
Sbjct: 121 EIVHFVNDAEPVMFAHPIPRFPVVKERVPNPSFLQKGEEPPGEHIPAWLPAFPDPQTYSQ 180

Query: 178 SPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQ-----FSESGPSSFVHGDSSKEKKT 232
           SP+ N R ++    K +  ++  K E   +NLQ+Q     F +S  +S    D+  ++  
Sbjct: 181 SPAVNGRGTEPRAVKFDQERESGKGEWPALNLQQQMVSNMFEKS--ASIDPADAKAKRVA 238

Query: 233 VESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAM 292
            E NPFL+APL  E+KEV+SV  PAKL  + AL NPV +  V +  IS +ETFAPA+EAM
Sbjct: 239 AEGNPFLAAPLKIEDKEVASVPPPAKLFNDEALDNPVVENLVENEPISALETFAPAIEAM 298

Query: 293 KNRFCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENEND 352
           K+  C+S+E+Q     +++P V+FKIG+  K L K +   PQ  +  K  PWF  E+E D
Sbjct: 299 KSTICDSKEDQTKFCANEKPTVRFKIGIKNKLLGKSIGLIPQKEEHEKTLPWFAMEDEKD 358

Query: 353 ERK 355
           +RK
Sbjct: 359 DRK 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526516|ref|XP_003531863.1| PREDICTED: uncharacterized protein LOC100778210 isoform 1 [Glycine max] gi|356526518|ref|XP_003531864.1| PREDICTED: uncharacterized protein LOC100778210 isoform 2 [Glycine max]

 Score =  350 bits (899), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 183/361 (50%), Positives = 246/361 (68%), Gaps = 6/361 (1%)

Query: 1   MSDGGGESGSKHQQPHT--KRKFSG-DDFSQAIAKVAVAQICERVGFQTFQQSALGKLAD 57
           MS+GGG++G + +QP T  +RK  G DD+++AIAK+AVAQ+CE  GFQ FQQSAL  L+D
Sbjct: 1   MSNGGGKTGRQLEQPGTWGRRKVGGGDDYARAIAKIAVAQVCESEGFQAFQQSALEALSD 60

Query: 58  IAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVR 117
           +  RYI +VGK+A+ +ANLSGR E + FD+ QGLED+G  QGF+GASD++HCL SSG++R
Sbjct: 61  VVARYILNVGKSAHCHANLSGRTECHAFDVIQGLEDMGSVQGFAGASDVDHCLESSGVIR 120

Query: 118 ELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFE 177
           E++ + N+A  V FA+ IP FPVVK+R P  SFLQ GEEPP E IPAWLPAFPD QTY E
Sbjct: 121 EIVHFVNDAEPVMFAHPIPQFPVVKERVPNPSFLQKGEEPPGEHIPAWLPAFPDLQTYSE 180

Query: 178 SPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESG--PSSFVHGDSSKEKKT-VE 234
           SP  N R ++    K +  ++  K E   +N Q+Q   +    S+ +    +K K+   E
Sbjct: 181 SPVVNGRGTEPRAVKFDQERENGKGEWPAMNFQQQMVSNMFEKSALIDPADAKAKRVAAE 240

Query: 235 SNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKN 294
            NPFL+APL  E+KEV+SV  PAKL  +VAL NPV +  V +  IS METFAPA+EAMK+
Sbjct: 241 GNPFLAAPLKIEDKEVASVPPPAKLFNDVALDNPVVENFVENEPISAMETFAPAIEAMKS 300

Query: 295 RFCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDER 354
             C+S E+Q   + +++P V+FKIG+  K L K +   PQ  +     PWF  E+  D+R
Sbjct: 301 TCCDSNEDQTKFRANEKPTVRFKIGIKNKLLGKSIGLIPQKEEHKNTLPWFAMEDGKDDR 360

Query: 355 K 355
           K
Sbjct: 361 K 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447663|ref|XP_004141587.1| PREDICTED: uncharacterized protein LOC101215115 [Cucumis sativus]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 186/360 (51%), Positives = 237/360 (65%), Gaps = 9/360 (2%)

Query: 1   MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAV 60
           MSDGGGESG  H++P T++    +DF +A+AK+AVAQICE  GFQ FQQSAL  LAD+AV
Sbjct: 1   MSDGGGESGKVHERPKTRKNLGSEDFPRALAKIAVAQICESEGFQIFQQSALETLADVAV 60

Query: 61  RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELI 120
           RY+ ++G  ANF AN +GR E N+FDI Q LEDLG  QGF+GASDI HCLASS  V+E  
Sbjct: 61  RYVQNMGSTANFCANFAGRTECNLFDIIQALEDLGSVQGFAGASDIEHCLASSSTVKEFA 120

Query: 121 QYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPS 180
           +Y  +A +VPFAY++P FPVVK+RK + SFLQIGEEPP E IP+WLPA PDP+TY ESP 
Sbjct: 121 RYVAQAEEVPFAYSVPKFPVVKERKLRPSFLQIGEEPPGEHIPSWLPALPDPETYIESPI 180

Query: 181 QNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGD---SSKEKKTVESNP 237
             E   +  T K E  KQ R  E S  NLQ+    +G       D   ++  K+  ESNP
Sbjct: 181 VKEEVVEPQTIKTEPEKQCR-TEKSFWNLQQWLFCNGLEGSQREDPRNAAMTKQIQESNP 239

Query: 238 FLSAPLHFEEKEVSSVVLPAKL--SKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNR 295
           FL+ PL F EKEVSS+VLP K+  +       PV +   VD H+SV+ETFAPA+E++KN 
Sbjct: 240 FLAPPLQFGEKEVSSIVLPDKVLNNSSTEYHVPVMENCQVDTHVSVLETFAPAIESIKNN 299

Query: 296 FCESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERK 355
           F  S E+     L+++  VQFKIG GKK+    ++    N    K   WF  E+E D++K
Sbjct: 300 FHMSEEK---YSLNRKSTVQFKIGTGKKAAGNMIELRALNNGVKKSSSWFVGEDEKDDKK 356

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440055|ref|XP_002282259.1| PREDICTED: uncharacterized protein LOC100260255 [Vitis vinifera]

 Score =  333 bits (855), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 167/359 (46%), Positives = 241/359 (67%), Gaps = 15/359 (4%)

Query: 1   MSDGGGESGSKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAV 60
           MSDGG E   ++   +  ++   D+F +A++K+AVAQICE VGF+ FQ SAL  L++IAV
Sbjct: 1   MSDGG-EDDRRNSDNNAPKRAGPDEFGRAVSKIAVAQICESVGFEGFQDSALQALSNIAV 59

Query: 61  RYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELI 120
           RY+  VGK ANF ANL+GR + NVFD+ +GLEDLG  +GFSGAS ++ C+ SSG VRE++
Sbjct: 60  RYLCDVGKTANFCANLAGRTQCNVFDVIRGLEDLGSSEGFSGASGVDQCIVSSGTVREIV 119

Query: 121 QYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPS 180
           +Y N A ++PFA  +P FPVV++ K   SF+Q+GE P  + IP WLPAFPD  TY ++P 
Sbjct: 120 EYVNSAKEIPFAQPVPRFPVVRNCKATPSFVQMGETPVGKHIPPWLPAFPDSHTYIQTPM 179

Query: 181 QNERASDSYTEKIELGKQQRKMEMSMVNLQRQF----SESGPSSFVHGDSSKEKKTVESN 236
            NERA+D   +K+E  +Q+RK E S+++LQ++     S S  +S    D ++  +  E N
Sbjct: 180 WNERATDPRADKLEQARQRRKAERSLLSLQQRLVCNGSASASTSVGRCDDAEASRAAEGN 239

Query: 237 PFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMKNRF 296
           P+L++PL F EK+VS+VVLPAKL  ++          VVDNH+SV+ETFAPA+EA+KN F
Sbjct: 240 PYLASPLQFGEKDVSTVVLPAKLLDDL----------VVDNHVSVLETFAPAIEAVKNSF 289

Query: 297 CESREEQKNIQLDQRPPVQFKIGVGKKSLVKPLKSSPQNMDGGKIDPWFCKENENDERK 355
            +S E +KN+  ++R  V FK+  GKK L + +    +N   GK+     ++ E D++K
Sbjct: 290 VDSGESEKNVVPEKRSAVHFKLRTGKKILGESVDLRLKNKSVGKVVSLIGRDEERDDKK 348

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2076567	397	AT3G02160 [Arabidopsis thalian	0.966	0.879	0.408	8.8e-63
TAIR|locus:2180852	381	AT5G15570 "AT5G15570" [Arabido	0.822	0.779	0.400	6.1e-55
TAIR|locus:2116149	353	TAF8 "TBP-associated factor 8"	0.520	0.532	0.471	2.6e-45
TAIR|locus:2197530	277	AT1G31240 [Arabidopsis thalian	0.498	0.649	0.299	9.2e-20
MGI|MGI:1926879	308	Taf8 "TAF8 RNA polymerase II,	0.349	0.409	0.282	6.4e-08
RGD|1308423	308	Taf8 "TAF8 RNA polymerase II,	0.349	0.409	0.282	9.9e-08
RGD|2324594	607	Taf3 "TAF3 RNA polymerase II,	0.243	0.144	0.284	1.4e-07
UNIPROTKB|Q6QI09	607	Taf3 "ATP synthase gamma chain	0.243	0.144	0.284	1.4e-07
UNIPROTKB|E2RN76	310	TAF8 "Uncharacterized protein"	0.349	0.406	0.282	2.1e-07
UNIPROTKB|Q7Z7C8	310	TAF8 "Transcription initiation	0.349	0.406	0.282	2.1e-07

TAIR|locus:2076567 AT3G02160 [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 154/377 (40%), Positives = 215/377 (57%)

Query:     1 MSDGGGESGSKHQQPHTKRK-FSGDDFSQAIAKVAVAQICERV------------G--FQ 45
             M++G GE GS+ ++ H KRK F G+DF+ +IA++AVAQICE V            G  F 
Sbjct:    17 MNNGVGEGGSQQRELHGKRKLFRGNDFAFSIARMAVAQICESVEVNPYQESQTREGVRFS 76

Query:    46 TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASD 105
             +FQ+SAL  L D+AV+YI S+GK A+ YANL+GR +GN  DI Q LEDLG   GF+G SD
Sbjct:    77 SFQESALDTLTDVAVQYIQSIGKTAHLYANLAGRVDGNSLDILQALEDLGSGLGFAGVSD 136

Query:   106 INHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAW 165
              +HCLA SG+V+++I+Y  EA ++PF Y++P FP  K++KP  SF ++G EPP E IP W
Sbjct:   137 TDHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFSKEKKPAPSFSEVGAEPPDEHIPVW 196

Query:   166 LPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGD 225
             LPAFP+ +    S   N    +      E G     M++S     R   E   SS   G+
Sbjct:   197 LPAFPETELCDRSEETNAATIEGEIPSKENGSSLPSMQLSFDGGGRL--EIHKSSKDVGE 254

Query:   226 SSKEKKTVESNPFLSAPLHFEEKEVSSVVLPAKLSKEVALQNPVAKKHVVDNH-ISVMET 284
             S++    VE N FL+APL F EK VS VV P +LS EV   N V  KHV +NH I ++E 
Sbjct:   255 STEA--VVEGNLFLTAPLRFVEKNVSPVVRPLELSNEVVRTNHVPDKHVRNNHHIPILEA 312

Query:   285 FAPALEAM-KNRFCESREEQK-NIQLDQRPPVQFKIXXXXXXXXXXXXXXXQNMDGGKID 342
              AP+ +   KN    S++ +K ++   +   V+FKI               Q  +G    
Sbjct:   313 SAPSDKINNKNWLAISKDVEKVDVARKELTLVRFKIGTTKRSMCLAKNRSFQE-EG---- 367

Query:   343 PWFCKENENDERKGDLK 359
              WF +  +  E+  ++K
Sbjct:   368 -WFQEGEDKREKTSEIK 383

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180852 AT5G15570 "AT5G15570" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 131/327 (40%), Positives = 188/327 (57%)

Query:     1 MSDGGGESGSKHQQPHTKRKFS-GDDFSQAIAKVAVAQICERV-------------G--F 44
             M +GGGE GS+ ++   KR  S G+DF+ A+A++A AQICE V             G  F
Sbjct:     1 MINGGGEGGSQRRELQGKRSMSRGNDFAYALARMATAQICESVEINSYQESSQSREGLRF 60

Query:    45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGAS 104
              +FQ++AL  L D+ ++YI ++GK A FY N++GR E N  DI Q LEDLG   GF GA 
Sbjct:    61 SSFQETALETLTDVVIQYIQNIGKTAQFYVNMAGRVESNALDIVQALEDLGSGLGFDGAH 120

Query:   105 DINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPA 164
             D+ HCLA SG+V+++I+Y  EA ++PF Y++P FP  + ++P  SF  IG EPP E IP 
Sbjct:   121 DVEHCLADSGVVKDIIRYTGEAEEIPFVYSLPRFPFNRGKRPAPSFSDIGVEPPDEHIPV 180

Query:   165 WLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESG---PSSF 221
             WLPAFP+  T   + S+     +   +KIE   Q R    S++++Q+           S 
Sbjct:   181 WLPAFPE--TKMSNGSE-----EINVDKIERDVQSRDNGSSLMSVQQSVDVDRLKVQKSM 233

Query:   222 VHGDSSKEKKTVESNPFLSAPLHFEEKEVS--SVVLPAKLSKEVALQNPVAKKHV-VDNH 278
                D  K  +  E NPFL+AP+   EK VS   VV P++L KE    N + +KH+ + +H
Sbjct:   234 DQKDVQKPIEEPEGNPFLAAPIWVGEKNVSLSRVVCPSELRKEEISTNHLPEKHMSMSHH 293

Query:   279 ISVMETFAPALEAM-KNRFCESREEQK 304
             I  +E +A + +   KNR     +EQK
Sbjct:   294 IPALEAYALSDKINDKNRLAGMEDEQK 320

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2116149 TAF8 "TBP-associated factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
 Identities = 90/191 (47%), Positives = 126/191 (65%)

Query:    25 DFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNV 84
             +FS A AK AVAQ+CE VG++ F+  AL  L+  A++YI  +GK A  +ANL+GR++ NV
Sbjct:    25 EFSHAAAKAAVAQVCESVGYENFKDPALESLSGFALQYILQLGKTATSFANLTGRSQCNV 84

Query:    85 FDIFQGLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPV-VKD 143
             FDI   L+DL  + G  G S  +  L  S  +RE+I + N + +VPF+  +P FPV + D
Sbjct:    85 FDIILALDDLTDNNGEQGISSESCSLGRSIKLREIIDFVNSSEEVPFSQPLPSFPVAISD 144

Query:   144 RKPKS--SFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRK 201
             R  K   SF++IGE PP + IP WLPAFPDP TY E+P   ER SD   +KIE  +Q+RK
Sbjct:   145 RSRKMIPSFVEIGETPPGKHIPLWLPAFPDPHTYKETPMWIERVSDPRGDKIEQARQRRK 204

Query:   202 MEMSMVNLQRQ 212
              E ++++LQR+
Sbjct:   205 AERALLSLQRK 215

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197530 AT1G31240 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 56/187 (29%), Positives = 94/187 (50%)

Query:    11 KHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAA 70
             K ++   +   S  +FS ++ K+AV+QIC+ +G++    SAL  L     +++ S+ + A
Sbjct:    11 KFEETSDQSPTSTAEFSFSLTKIAVSQICQSIGYKATDASALNTLTLTTTKFLQSLAELA 70

Query:    71 NFYANLSGRAEGNVFDIFQGLEDLGLDQG--FSGAS---DI-NHCLASSGIVRELIQYAN 124
             + ++N + R E N+FDI  GL+D+ L     F G S   DI + CL  S ++R L  +  
Sbjct:    71 SSFSNTANRTEVNLFDIVNGLQDIALSTSDCFPGGSTVHDIESQCLIKSAVLRNLSDFVT 130

Query:   125 EATDVPFAYAIPHFPVVKDRKPKSSFLQIGEEPPIEDIPAWLPAFPDPQTYFESPSQNER 184
              A ++PFA  +P              + +     +  +PAWLP FPD     +  S++ R
Sbjct:   131 YAPEIPFAKPLPRRERDGSFGGDLDHVAVTRSVDVTSVPAWLPPFPDSSLCSDRCSKDNR 190

Query:   185 ASDSYTE 191
              SD   E
Sbjct:   191 -SDHLWE 196

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1926879 Taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factorq" [Mus musculus (taxid:10090)]

 Score = 101 (40.6 bits), Expect = 6.4e-08, Sum P(2) = 6.4e-08
 Identities = 39/138 (28%), Positives = 61/138 (44%)

Query:   104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
             SDI   L   G  V  L  YA  +  +   A  + + PV     PK+  L  G+  P   
Sbjct:    89 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 142

Query:   162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
              IP+  P FPDP TY ++P+  E  SD    + +   Q+R +E +   L R  +++G + 
Sbjct:   143 HIPSHFPEFPDPHTYIKTPTYREPVSDYQILREKAASQRRDVERA---LTRFMAKTGETQ 199

Query:   221 FVHGDSSKEKKTVESNPF 238
              +  D       + + PF
Sbjct:   200 SLFKDDVSTFPLIAARPF 217

GO:0001833 "inner cell mass cell proliferation" evidence=IMP

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0045598 "regulation of fat cell differentiation" evidence=ISA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=ISO

RGD|1308423 Taf8 "TAF8 RNA polymerase II, TATA box binding protein (TBP)-associated factor" [Rattus norvegicus (taxid:10116)]

 Score = 102 (41.0 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
 Identities = 39/138 (28%), Positives = 61/138 (44%)

Query:   104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
             SDI   L   G  V  L  YA  +  +   A  + + PV     PK+  L  G+  P   
Sbjct:    89 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 142

Query:   162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
              IP+  P FPDP TY ++P+  E  SD    + +   Q+R +E +   L R  +++G + 
Sbjct:   143 HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 199

Query:   221 FVHGDSSKEKKTVESNPF 238
              +  D       + + PF
Sbjct:   200 SLFKDDVSTFPLIAARPF 217

GO:0001833 "inner cell mass cell proliferation" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=IEA;ISO

GO:0045598 "regulation of fat cell differentiation" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051457 "maintenance of protein location in nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

RGD|2324594 Taf3 "TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 140kDa" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 25/88 (28%), Positives = 53/88 (60%)

Query:    10 SKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKA 69
             SK    + +R+   + +S+++ +V+VAQIC+ +G+ + Q SA   L D+  RY+  +G+ 
Sbjct:   322 SKMDGFYQQRRGMCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRG 381

Query:    70 ANFYANLSGRAEGNVFDIFQGLEDLGLD 97
              + Y+ L GR +  + D+ +  + +G++
Sbjct:   382 CHRYSELYGRTDPILDDVGEAFQLMGVN 409

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0002039 "p53 binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005669 "transcription factor TFIID complex" evidence=ISO

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=ISO

UNIPROTKB|Q6QI09 Taf3 "ATP synthase gamma chain" [Rattus norvegicus (taxid:10116)]

 Score = 126 (49.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 25/88 (28%), Positives = 53/88 (60%)

Query:    10 SKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKA 69
             SK    + +R+   + +S+++ +V+VAQIC+ +G+ + Q SA   L D+  RY+  +G+ 
Sbjct:   322 SKMDGFYQQRRGMCESYSRSLLRVSVAQICQALGWDSVQLSACHLLTDVLQRYLQQLGRG 381

Query:    70 ANFYANLSGRAEGNVFDIFQGLEDLGLD 97
              + Y+ L GR +  + D+ +  + +G++
Sbjct:   382 CHRYSELYGRTDPILDDVGEAFQLMGVN 409

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

UNIPROTKB|E2RN76 TAF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 102 (41.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 39/138 (28%), Positives = 61/138 (44%)

Query:   104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
             SDI   L   G  V  L  YA  +  +   A  + + PV     PK+  L  G+  P   
Sbjct:    91 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 144

Query:   162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
              IP+  P FPDP TY ++P+  E  SD    + +   Q+R +E +   L R  +++G + 
Sbjct:   145 HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 201

Query:   221 FVHGDSSKEKKTVESNPF 238
              +  D       + + PF
Sbjct:   202 SLFKDDVSTFPLIAARPF 219

GO:0046982 "protein heterodimerization activity" evidence=IEA

UNIPROTKB|Q7Z7C8 TAF8 "Transcription initiation factor TFIID subunit 8" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
 Identities = 39/138 (28%), Positives = 61/138 (44%)

Query:   104 SDINHCLASSGI-VRELIQYANEATDVPF-AYAIPHFPVVKDRKPKSSFLQIGEEPPIED 161
             SDI   L   G  V  L  YA  +  +   A  + + PV     PK+  L  G+  P   
Sbjct:    91 SDIVVTLVEMGFNVDTLPAYAKRSQRMVITAPPVTNQPVT----PKA--LTAGQNRPHPP 144

Query:   162 -IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSS 220
              IP+  P FPDP TY ++P+  E  SD    + +   Q+R +E +   L R  +++G + 
Sbjct:   145 HIPSHFPEFPDPHTYIKTPTYREPVSDYQVLREKAASQRRDVERA---LTRFMAKTGETQ 201

Query:   221 FVHGDSSKEKKTVESNPF 238
              +  D       + + PF
Sbjct:   202 SLFKDDVSTFPLIAARPF 219

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0001833 "inner cell mass cell proliferation" evidence=IEA

GO:0005669 "transcription factor TFIID complex" evidence=IDA

GO:0045598 "regulation of fat cell differentiation" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051457 "maintenance of protein location in nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
smart00576	77	smart00576, BTP, Bromodomain transcription factors	6e-23
pfam07524	77	pfam07524, Bromo_TP, Bromodomain associated	2e-16
cd08049	54	cd08049, TAF8, TATA Binding Protein (TBP) Associat	3e-10
pfam10406	51	pfam10406, TAF8_C, Transcription factor TFIID comp	6e-08

>gnl|CDD|128846 smart00576, BTP, Bromodomain transcription factors and PHD domain containing proteins

 Score = 90.5 bits (225), Expect = 6e-23
 Identities = 34/77 (44%), Positives = 50/77 (64%)

Query: 24  DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
           ++ + A+ ++AVAQI E  GF +FQ+SAL  L DI   YI  +G+ A+ YA L+GR E N
Sbjct: 1   NELAFALLRIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPN 60

Query: 84  VFDIFQGLEDLGLDQGF 100
           + D+   LE+LG+  G 
Sbjct: 61  LGDVVLALENLGISVGE 77

subdomain of archael histone-like transcription factors. Length = 77

>gnl|CDD|219450 pfam07524, Bromo_TP, Bromodomain associated

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 30/76 (39%), Positives = 48/76 (63%)

Query: 24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGN 83
          D+ +  + KV VAQI E  GF + ++SAL  L DIA  YI  +G+ A  +A  +GR+E  
Sbjct: 1  DELAHDLLKVVVAQILETAGFDSAEESALETLTDIAQSYIQELGRQAKRFAEHAGRSEPT 60

Query: 84 VFDIFQGLEDLGLDQG 99
          +FD+   L+++G++ G
Sbjct: 61 LFDVVLTLKEMGINVG 76

This domain is predicted to bind DNA and is often found associated with pfam00439 and in transcription factors. It has a histone-like fold. Length = 77

>gnl|CDD|176263 cd08049, TAF8, TATA Binding Protein (TBP) Associated Factor 8

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 162 IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQ 212
           IP+WLP FPDP TY  +P+ +ER +D    + EL  Q+R  E +++ LQ++
Sbjct: 3   IPSWLPPFPDPHTYKRTPTYSERETDPKKLREELASQRRLAEKALLRLQQK 53

The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promoter recognition, or a role in the essential catalytic activity of the complex. The mouse ortholog of TAF8 is called taube nuss protein (TBN), and is required for early embryonic development. TBN mutant mice exhibit disturbances in the balance between cell death and cell survival in the early embryo. TAF8 plays a role in the differentiation of preadipocyte fibroblasts to adipocytes; it is also required for the integration of TAF10 into the TAF complex. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF8 is also a component of a small TAF complex (SMAT), which contains TAF8, TAF10 and SUPT7L. Several TAFs interact via histone-fold motifs. The histone fold (HFD) is the interaction motif involved in heterodimerization of the core histones and their assembly into nucleosome octamer. TAF8 contains an H4 related histone fold motif, and interacts with several subunits of TFIID, including TBP and the histone-fold protein TAF10. Currently, five HF-containing TAF pairs have been described or suggested to exist in TFIID: TAF6-TAF9, TAF4-TAF12, TAF11-TAF13, TAF8-TAF10 and TAF3-TAF10. Length = 54

>gnl|CDD|192573 pfam10406, TAF8_C, Transcription factor TFIID complex subunit 8 C-term

 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 16/49 (32%), Positives = 26/49 (53%)

Query: 162 IPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ 210
           IP+WLP FP   TY ++P   E  +D    + +L ++ R  E ++  L 
Sbjct: 3   IPSWLPDFPPDHTYKKTPVYTEPVTDPRKIREKLVEESRLAEKALRKLL 51

This is the C-terminal, Delta, part of the TAF8 protein. The N-terminal is generally the histone fold domain, Bromo_TP (pfam07524). TAF8 is one of the key subunits of the transcription factor for pol II, TFIID. TAF8 is one of the several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery. Length = 51

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG2389	353	consensus Predicted bromodomain transcription fact	100.0
KOG4336	323	consensus TBP-associated transcription factor Prod	100.0
PF10406	51	TAF8_C: Transcription factor TFIID complex subunit	99.84
cd08049	54	TAF8 TATA Binding Protein (TBP) Associated Factor	99.83
smart00576	77	BTP Bromodomain transcription factors and PHD doma	99.83
PF07524	77	Bromo_TP: Bromodomain associated; InterPro: IPR006	99.83
PLN00035	103	histone H4; Provisional	99.08
PTZ00015	102	histone H4; Provisional	99.06
cd00076	85	H4 Histone H4, one of the four histones, along wit	98.79
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	98.6
KOG3467	103	consensus Histone H4 [Chromatin structure and dyna	98.54
smart00803	65	TAF TATA box binding protein associated factor. TA	98.43
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	98.37
PF02291	129	TFIID-31kDa: Transcription initiation factor IID,	98.29
smart00417	74	H4 Histone H4.	98.25
PF15630	76	CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C	98.14
KOG3334	148	consensus Transcription initiation factor TFIID, s	98.05
PF02969	66	TAF: TATA box binding protein associated factor (T	97.79
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	97.37
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	97.31
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	97.3
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	96.92
COG5094	145	TAF9 Transcription initiation factor TFIID, subuni	96.83
smart00428	105	H3 Histone H3.	96.19
cd07978	92	TAF13 The TATA Binding Protein (TBP) Associated Fa	96.07
PF15511	414	CENP-T: Centromere kinetochore component CENP-T; P	95.96
KOG3423	176	consensus Transcription initiation factor TFIID, s	95.88
PF02269	93	TFIID-18kDa: Transcription initiation factor IID,	95.44
KOG2549	576	consensus Transcription initiation factor TFIID, s	95.22
PLN00161	135	histone H3; Provisional	94.96
PLN00160	97	histone H3; Provisional	94.62
KOG0870	172	consensus DNA polymerase epsilon, subunit D [Trans	94.4
PF03540	51	TFIID_30kDa: Transcription initiation factor TFIID	94.21
PLN00121	136	histone H3; Provisional	94.18
PTZ00018	136	histone H3; Provisional	94.16
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	93.61
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	92.19
KOG0869	168	consensus CCAAT-binding factor, subunit A (HAP3) [	91.53
KOG1142	258	consensus Transcription initiation factor TFIID, s	89.97
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	89.29
COG5162	197	Transcription initiation factor TFIID, subunit TAF	88.36
KOG3901	109	consensus Transcription initiation factor IID subu	86.54
KOG0871	156	consensus Class 2 transcription repressor NC2, bet	85.81
COG5248	126	TAF19 Transcription initiation factor TFIID, subun	82.31
PLN00154	136	histone H2A; Provisional	80.96

>KOG2389 consensus Predicted bromodomain transcription factor [Transcription]

Probab=100.00  E-value=8.8e-47  Score=365.81  Aligned_cols=318  Identities=27%  Similarity=0.388  Sum_probs=278.8

Q ss_pred             CccCCCCCCCCCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Q 018049           10 SKHQQPHTKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQ   89 (361)
Q Consensus        10 ~~~~~~~~~~~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~   89 (361)
                      -+.+..+.+++.+.++|++.+++++|||||+++||++...+||++|+++++.||++||++||.|++++||++||++|+++
T Consensus        10 ~q~~~~~~~~~~~~~~ya~sla~~avaQIcqslg~~~~~~sale~Ltd~~~qyvQ~lgk~a~~~~n~anR~epnl~Div~   89 (353)
T KOG2389|consen   10 QQAEEESERSESEEAEYAFSLARVAVAQICQSLGYSSTQNSALETLTDVLQQYVQNLGKTAHRYSNLANRTEPNLFDIVL   89 (353)
T ss_pred             hhhhhhcCccchhHHHHHHHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCCCccHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCCccchhhcccchhhHHHHHHHhhcCCCCCCCCCCCCCCCCC-CCCCCcccCCCCCCCCCCCCCCCC-
Q 018049           90 GLEDLGLDQGFSGASDINHCLASSGIVRELIQYANEATDVPFAYAIPHFPVVKD-RKPKSSFLQIGEEPPIEDIPAWLP-  167 (361)
Q Consensus        90 AL~dmGi~~gf~gas~~~~~l~~S~~l~eL~~yv~~~~~ipf~~~lP~fPv~k~-~~~~psfl~~Ge~~~p~hIP~~LP-  167 (361)
                      ||.+|+++.|+.|+++.+|||.+|+.+++|+.|..++++|||.+++|+||+.+. ..+.|+|...|..+++.|||.||| 
T Consensus        90 Al~dls~s~~~~~~~~~s~~L~ds~v~rdii~~~g~~eevpF~~~lP~Fp~s~s~~k~~l~~~~~g~~pp~~~Ip~wLP~  169 (353)
T KOG2389|consen   90 ALQDLSASLGASGSSGESHCLLDSKVLRDIIIFNGKAEEVPFKDDLPRFPVSKSVNKPFLKFGSVGAEPPGESIPIWLPP  169 (353)
T ss_pred             HHHHhhhhcccccccchhHHHhhhhhHHHHHhhccccccCCCCCCCCccccccccccCCCCccccCCCCCCccccccCCC
Confidence            999999999999999999999999999999999999999999999999999987 677888988999999999999999 


Q ss_pred             CCCCCCCcccCCCCCCCCCChHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCccccCC--cccccccccCCCCccCCCCc
Q 018049          168 AFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQFSESGPSSFVHGD--SSKEKKTVESNPFLSAPLHF  245 (361)
Q Consensus       168 ~FP~~HTY~~TPi~~e~~tD~~~iRe~~a~q~R~aE~AL~~L~~~~~~~~~~~~~~~~--~~~~~~~~~~npf~~~~~~~  245 (361)
                      +||+.|+|..+|.++....+++.--.+.+.+.+.++.+.....+...+       .+.  .++.....++|+|+.++.++
T Consensus       170 ~fp~~~~~~~s~e~~~~~~~~~~~~~~~~s~~~~~~ls~~~~~r~~v~-------k~~~~~~~~~~~s~g~~~~~~~~~~  242 (353)
T KOG2389|consen  170 AFPDLEGCSKSPEGNVTVPKPEGRPPEKASLELRASLSEDSGGRLQVK-------KDSEEKEKPEWTSKGPKKLTRAEEI  242 (353)
T ss_pred             CCCCcccCCCCccccccccCcccCchhhhhhhhhhhhhhhccccchhh-------hhhhhhcCcccccCCChhhhcchhc
Confidence            899999999999988888888766666666655555555444433333       222  22223333899999999999


Q ss_pred             ccccccc--ccCChhhhhHHhhhcccccccccccccchhhhchhHHHHhh-ccccchhhhhhh-cccCCCCCeeeeeecC
Q 018049          246 EEKEVSS--VVLPAKLSKEVALQNPVAKKHVVDNHISVMETFAPALEAMK-NRFCESREEQKN-IQLDQRPPVQFKIGVG  321 (361)
Q Consensus       246 ~ek~vs~--v~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~fapa~~~~~-~~~~~~~~~~~~-~~~~~~~~v~~k~~~~  321 (361)
                      |++.|+.  +|.+..+.+....+|+++.+|+..   ++|++.|+.--+.+ ++.....+.+|+ ++..+-.+++|||+..
T Consensus       243 ~~~~vs~~~kV~~~~~~~~~i~t~~~Pa~~~~~---p~l~~~a~~e~~~~k~v~~~t~d~ek~~~~~~~~~l~~~k~~~~  319 (353)
T KOG2389|consen  243 RDQLVSAKSKVVLLNRVGAPIQTTLPPAQQPAT---PILVPQASMEPATNKPVVGATVDIEKAPFLLAEPALLVEKKTER  319 (353)
T ss_pred             ccccccccccccccccCCceeeccCCCcccCCc---cccccccccccccCcccccchhhhhhchhhcccchhhhhhhccc
Confidence            9999996  999999999999999999999955   89999998877766 777777777776 7899999999999999


Q ss_pred             cccccccCCCCccCCC
Q 018049          322 KKSLVKPLKSSPQNMD  337 (361)
Q Consensus       322 k~~~~~~~~~~~~~~~  337 (361)
                      +.+.|.+.+.-.+++.
T Consensus       320 ~~s~~~~~~~ed~~kr  335 (353)
T KOG2389|consen  320 QFSEGPSSSREDQEKR  335 (353)
T ss_pred             ccccccccchhhhhcc
Confidence            9999999999555543

>KOG4336 consensus TBP-associated transcription factor Prodos [Transcription]

Probab=100.00  E-value=9e-36  Score=284.69  Aligned_cols=166  Identities=23%  Similarity=0.402  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCCCCCCccchhh
Q 018049           30 IAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHC  109 (361)
Q Consensus        30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~~gf~gas~~~~~  109 (361)
                      +|..+|+++|..+||+.++..|+++|+++++.||.+|++.+|.||+|+|||+|+..||.++|.+|||.            
T Consensus         6 vl~~VV~~Ll~~~gfd~is~~aletlvell~~yi~eigrq~~n~celagRT~pT~~Dv~l~Li~mnI~------------   73 (323)
T KOG4336|consen    6 VLAPVVSNLLKTKGFDSISNAALETLVELLQSYIREIGRQLHNYCELAGRTIPTQGDVKLTLIEMNIK------------   73 (323)
T ss_pred             HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHhCCC------------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999            


Q ss_pred             cccchhhHHHHHHHhhcCCCC--CCCCCCCCCCCCC--C-CCC-CcccCCC-CCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 018049          110 LASSGIVRELIQYANEATDVP--FAYAIPHFPVVKD--R-KPK-SSFLQIG-EEPPIEDIPAWLPAFPDPQTYFESPSQN  182 (361)
Q Consensus       110 l~~S~~l~eL~~yv~~~~~ip--f~~~lP~fPv~k~--~-~~~-psfl~~G-e~~~p~hIP~~LP~FP~~HTY~~TPi~~  182 (361)
                            +.+|.+|.+.....-  -...+|.  ....  + ..+ ...+..| +.++|.|||+|||+||++|||++||+|+
T Consensus        74 ------v~sL~~~~q~~~~sl~~~~~~aP~--~~~q~~ds~~~~~~~l~~gv~~php~yIpshLPpfPdpHTYi~Tpi~~  145 (323)
T KOG4336|consen   74 ------VSSLYAYFQKQEFSLWSVLIAAPE--NQEQEEDSEQQPELLLTLGVSRPHPKYIPSHLPPFPDPHTYIKTPIYK  145 (323)
T ss_pred             ------hhhhHHHHHhccchhhhccccCCC--cCCccccccccchHhhhcCCCCCCCccccccCCCCCCCcccccCCccC
Confidence                  688988886543211  1233443  2221  0 011 2233444 4799999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHhHHHHHHHHHHHHHhc
Q 018049          183 ERASDSYTEKIELGKQQRKMEMSMVNLQRQFSE  215 (361)
Q Consensus       183 e~~tD~~~iRe~~a~q~R~aE~AL~~L~~~~~~  215 (361)
                      .++|||++||+++++|+|.+|+||+++..+...
T Consensus       146 ~p~tsyk~iRe~aaqe~r~~e~AL~~~~~r~~p  178 (323)
T KOG4336|consen  146 VPDTSYKAIREKAAQESRNSEKALTNYLKRNSP  178 (323)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999999999999999885

>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []

Probab=99.84  E-value=1.6e-21  Score=143.59  Aligned_cols=51  Identities=37%  Similarity=0.664  Sum_probs=49.7

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHhHHHHHHHHHH
Q 018049          160 EDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQ  210 (361)
Q Consensus       160 ~hIP~~LP~FP~~HTY~~TPi~~e~~tD~~~iRe~~a~q~R~aE~AL~~L~  210 (361)
                      +|||+|||+||++|||++||+|+++++|++++|+++++|+|++|+||++|+
T Consensus         1 ~~IP~~lP~fP~~HTY~~Tp~~~~~~~d~~~~r~~~~~~~r~~e~aL~~l~   51 (51)
T PF10406_consen    1 SHIPDWLPPFPPPHTYKRTPIYNERETDPKKIREKAAEQSRLAEKALRKLL   51 (51)
T ss_pred             CCCcccCCCCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            599999999999999999999999999999999999999999999999984

The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].

>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8

Probab=99.83  E-value=4.6e-21  Score=142.65  Aligned_cols=54  Identities=41%  Similarity=0.769  Sum_probs=52.2

Q ss_pred             CCCCCCCCCCCCCCCcccCCCCCCCCCChHHHHHHHHHHHhHHHHHHHHHHHHH
Q 018049          160 EDIPAWLPAFPDPQTYFESPSQNERASDSYTEKIELGKQQRKMEMSMVNLQRQF  213 (361)
Q Consensus       160 ~hIP~~LP~FP~~HTY~~TPi~~e~~tD~~~iRe~~a~q~R~aE~AL~~L~~~~  213 (361)
                      .|||+|||+||++|||++||+|+++++|++++|+++++|+|++|+||.+|++++
T Consensus         1 ~hIP~~LP~FP~~HTY~~Tp~~~~~~~d~~~~r~~~~~~~r~~e~aL~~l~~~~   54 (54)
T cd08049           1 AHIPSWLPPFPDPHTYKRTPTYSERETDPKKLREELASQRRLAEKALLRLQQKT   54 (54)
T ss_pred             CCCCcCCCCCCCchhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            499999999999999999999999999999999999999999999999999863

The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=99.83  E-value=2.6e-20  Score=147.66  Aligned_cols=75  Identities=44%  Similarity=0.722  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCC
Q 018049           24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQ   98 (361)
Q Consensus        24 def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~~   98 (361)
                      ++|++.+|+++|+|||+++||++++++|+|+|+|++++||.+|++.++.||+|+||++|++.||.+||++|||+.
T Consensus         1 ~~~~~~ll~~~Vaqil~~~Gf~~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~~~gi~~   75 (77)
T smart00576        1 NELAFALLRIAVAQILESAGFDSFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALENLGISV   75 (77)
T ss_pred             CHHHHHHHHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCccc
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999983

subdomain of archael histone-like transcription factors

>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)

Probab=99.83  E-value=4.4e-20  Score=145.90  Aligned_cols=74  Identities=39%  Similarity=0.688  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        24 def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      |+|++.+|+++|++||+++||++++++|||.|+|++.+||++|++.++.||+++|||+|++.||.+||++||++
T Consensus         1 ~e~~~~~l~~~va~il~~~GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~~~gi~   74 (77)
T PF07524_consen    1 DEFARSLLRRSVAQILKHAGFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALEEMGIS   74 (77)
T ss_pred             CHHHHHHHHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999998

The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].

>PLN00035 histone H4; Provisional

Probab=99.08  E-value=5.5e-10  Score=93.42  Aligned_cols=83  Identities=19%  Similarity=0.263  Sum_probs=74.8

Q ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           18 KRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        18 ~~~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      +.+....|....|-..+|..+++..|-..++..|.+.|.+++..|+.+|++.+..||+||+|.+++..||.+||+.+|-+
T Consensus        18 r~~k~~~d~i~~ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~g~~   97 (103)
T PLN00035         18 RHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT   97 (103)
T ss_pred             HHHHHHHhhhccCCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHcCCc
Confidence            34445556666688889999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             -CCC
Q 018049           98 -QGF  100 (361)
Q Consensus        98 -~gf  100 (361)
                       .||
T Consensus        98 lyGf  101 (103)
T PLN00035         98 LYGF  101 (103)
T ss_pred             CCCC
Confidence             455

>PTZ00015 histone H4; Provisional

Probab=99.06  E-value=6.1e-10  Score=93.11  Aligned_cols=81  Identities=16%  Similarity=0.265  Sum_probs=74.8

Q ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018049           17 TKRKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL   96 (361)
Q Consensus        17 ~~~~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi   96 (361)
                      .+.+....+..+.|...+|..|++..|-..++..|.+.+.+++..|+.+|++.+..||+||+|.+++..||.+||+..|-
T Consensus        18 kr~rk~~r~~i~gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr~g~   97 (102)
T PTZ00015         18 KRQKKVLRDNIRGITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKRQGR   97 (102)
T ss_pred             hhHHHHHhhcccCCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence            34445556777789999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 018049           97 D   97 (361)
Q Consensus        97 ~   97 (361)
                      +
T Consensus        98 ~   98 (102)
T PTZ00015         98 T   98 (102)
T ss_pred             C
Confidence            7

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=98.79  E-value=2.1e-08  Score=81.36  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        24 def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      .+....+...+|..+++..|-..++..|.+.+.+++..|+.+|++.+..||+||+|.+++..||.+||+.+|-+
T Consensus         8 ~~~~~gi~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~   81 (85)
T cd00076           8 RDNIKGITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT   81 (85)
T ss_pred             HHhhccCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCC
Confidence            35555677889999999999999999999999999999999999999999999999999999999999999977

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=98.60  E-value=7.5e-07  Score=76.31  Aligned_cols=87  Identities=21%  Similarity=0.341  Sum_probs=71.4

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCCCCCCccchhhccc
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLDQGFSGASDINHCLAS  112 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~~gf~gas~~~~~l~~  112 (361)
                      ++|.+||++.|-+.+++.|...|.|++.+|..+|+..+..||+||||.+++..||.+|+...+-. .|.+..        
T Consensus         5 ~~v~~iLk~~Gv~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~~-~f~~~p--------   75 (117)
T cd07979           5 RVIAAILKSMGITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVDY-SFTSPP--------   75 (117)
T ss_pred             HHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc-CCCCCC--------
Confidence            57899999999999999999999999999999999999999999999999999999999986542 232211        


Q ss_pred             chhhHHHHHHHhhcCCCC
Q 018049          113 SGIVRELIQYANEATDVP  130 (361)
Q Consensus       113 S~~l~eL~~yv~~~~~ip  130 (361)
                        .-..|.+.....+.+|
T Consensus        76 --~~~~l~~~a~~~N~~p   91 (117)
T cd07979          76 --PRDFLLELAREKNSIP   91 (117)
T ss_pred             --cHHHHHHHHHHhccCC
Confidence              1344666666555555

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>KOG3467 consensus Histone H4 [Chromatin structure and dynamics]

Probab=98.54  E-value=2e-07  Score=75.49  Aligned_cols=82  Identities=20%  Similarity=0.257  Sum_probs=75.1

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-
Q 018049           19 RKFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-   97 (361)
Q Consensus        19 ~~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-   97 (361)
                      -+.+..|-...+.+.+|-.+.+..|...+.--..+....++..||+++...+..|++||.|..+++.||+.+|..||+. 
T Consensus        19 HRK~LsDnIqgitKpaIRRlARr~GVkRi~G~~yeE~~~~~k~fl~n~i~~A~~yt~HAKRKTvT~~dvv~~LKR~G~~~   98 (103)
T KOG3467|consen   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL   98 (103)
T ss_pred             HHHHHHhhccccchHHHHHHHHhcCcchhchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeHHHHHHHHHHcCcee
Confidence            3446677777788999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             CCC
Q 018049           98 QGF  100 (361)
Q Consensus        98 ~gf  100 (361)
                      .||
T Consensus        99 ~g~  101 (103)
T KOG3467|consen   99 YGF  101 (103)
T ss_pred             ecc
Confidence            344

>smart00803 TAF TATA box binding protein associated factor

Probab=98.43  E-value=1e-06  Score=68.12  Aligned_cols=60  Identities=20%  Similarity=0.188  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ..|..++++.|.+.++..|.+.|.+.+..|+.++++.+..|++|++|++.+..||.+||+
T Consensus         6 ~~i~ria~~~Gi~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Alk   65 (65)
T smart00803        6 ETIKDVAESLGIGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSALR   65 (65)
T ss_pred             HHHHHHHHHCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHhC
Confidence            568889999999999999999999999999999999999999999999999999999984

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=98.37  E-value=1.3e-06  Score=71.92  Aligned_cols=67  Identities=24%  Similarity=0.301  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           31 AKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        31 Lr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      =...|..|++.+|=+.++.+|.+.|.++++.|+.+|+..+..||.|+||.++...||.+++..+|..
T Consensus        21 p~apv~Ri~r~~~~~Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~~~~~~~   87 (91)
T COG2036          21 PKAPVRRILRKAGAERVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLALKRLGRR   87 (91)
T ss_pred             CchHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHhccc
Confidence            3456888899999899999999999999999999999999999999999999999999999999876

>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=98.29  E-value=2.7e-06  Score=74.16  Aligned_cols=61  Identities=21%  Similarity=0.387  Sum_probs=53.2

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      ++|.+||++.|.+..++.+...|.|.+.+|..++...|+.||+||||+.++..||.+|..-
T Consensus        16 ~~i~~iL~~~Gv~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~~   76 (129)
T PF02291_consen   16 RVIHLILKSMGVTEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQS   76 (129)
T ss_dssp             HHHHHHHHHTT---B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999984

TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.

>smart00417 H4 Histone H4

Probab=98.25  E-value=1.4e-06  Score=69.08  Aligned_cols=68  Identities=18%  Similarity=0.248  Sum_probs=62.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 018049           23 GDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQG   90 (361)
Q Consensus        23 ~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~A   90 (361)
                      ..|....+...+|..|++..|-..++..+.+.|.+++..|+.++++.+..||+|++|.+++..||.+|
T Consensus         7 ~~d~i~gI~k~~IrRLaRr~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~a   74 (74)
T smart00417        7 LRDNIQGITKPAIRRLARRGGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVYA   74 (74)
T ss_pred             HHhhhcCCCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHheeC
Confidence            34556668889999999999999999999999999999999999999999999999999999999753

>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C

Probab=98.14  E-value=1e-05  Score=64.49  Aligned_cols=66  Identities=17%  Similarity=0.204  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHhCCc---ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           28 QAIAKVAVAQICERVGFQ---TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        28 r~lLr~aVAqIL~~~GF~---sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      .+-|.-.|++||++.+=.   .+++.++..|++++-.|+.+++..+..||.||||+.++..||.+..+.
T Consensus         4 Kaal~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rr   72 (76)
T PF15630_consen    4 KAALWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARR   72 (76)
T ss_dssp             HHHHHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhc
Confidence            456778899999998522   389999999999999999999999999999999999999999987653

>KOG3334 consensus Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=98.05  E-value=5.1e-05  Score=66.92  Aligned_cols=62  Identities=21%  Similarity=0.347  Sum_probs=59.6

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      ++|++||++.|.+-.++-....|.|...+|...+...+.-|++||+++.+...||.+|..-.
T Consensus        17 ~~i~~iL~s~GI~eyEprVi~qlLefa~rYtt~vL~DA~vys~HA~ka~i~~eDVrlA~~~~   78 (148)
T KOG3334|consen   17 RVIASILKSLGIQEYEPRVINQLLEFAYRYTTTVLDDAKVYSSHAKKATIDAEDVRLAIQMR   78 (148)
T ss_pred             HHHHHHHHHcCccccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999998853

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=97.79  E-value=0.00016  Score=56.22  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        32 r~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ..+|-.+.++.|+...+..+...|.+-+..-|.+|.+.+..|+.|++|+..+..||..||+
T Consensus         6 ~esvk~iAes~Gi~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen    6 QESVKDIAESLGISNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             HHHHHHHHHHTT---B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            3567788999999999999999999999999999999999999999999999999999985

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.37  E-value=0.0015  Score=51.37  Aligned_cols=51  Identities=20%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      +-..+++.|.+.|.+++..|+.+++..+..+|.|+||.++...||.++|+.
T Consensus        16 ~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981          16 PREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            346799999999999999999999999999999999999999999999987

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.31  E-value=0.0011  Score=66.27  Aligned_cols=69  Identities=19%  Similarity=0.230  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC--CCCC
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD--QGFS  101 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~--~gf~  101 (361)
                      ..|-.|++++|.+..+..|...|.+.++.++.+|++.|..+|.|++|+..+..||.+||+..++.  .||.
T Consensus         3 ~~i~~ia~~~Gi~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~eplyG~~   73 (343)
T cd08050           3 ESIKLIAESLGIDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVEPLYGFS   73 (343)
T ss_pred             hHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCCcccCCC
Confidence            35778899999999999999999999999999999999999999999999999999999999998  4543

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=97.30  E-value=0.0013  Score=51.17  Aligned_cols=61  Identities=16%  Similarity=0.076  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHhCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           32 KVAVAQICERVGFQ-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        32 r~aVAqIL~~~GF~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      .+++-.+....+.+ .++..|++.|..+++.|+.+|...+..+|.+++|.+.++.||..|++
T Consensus        12 ~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r   73 (75)
T PF00125_consen   12 SRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVR   73 (75)
T ss_dssp             HHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHH
T ss_pred             eeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHh
Confidence            34455555666665 89999999999999999999999999999999999999999999986

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=96.92  E-value=0.0049  Score=46.93  Aligned_cols=57  Identities=21%  Similarity=0.208  Sum_probs=49.6

Q ss_pred             HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Q 018049           35 VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGL   91 (361)
Q Consensus        35 VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL   91 (361)
                      |-.|++.. +...++..|.+.++..++.|+..|+..+...|+..+|.+.+..||..|+
T Consensus         8 vkri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av   65 (65)
T PF00808_consen    8 VKRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV   65 (65)
T ss_dssp             HHHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred             HHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence            45566666 6777999999999999999999999999999999999999999999885

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>COG5094 TAF9 Transcription initiation factor TFIID, subunit TAF9 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=96.83  E-value=0.0037  Score=54.15  Aligned_cols=61  Identities=23%  Similarity=0.296  Sum_probs=56.8

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCH---HHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNV---FDIFQGLED   93 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~---~DV~~AL~d   93 (361)
                      +.|..||.+.|.+.+++..--.|.+.+.+|-+++...+.-||+|+||+....   .||.+|+.-
T Consensus        18 rlihliL~Slgi~~ye~~VplQLl~FAhRYTq~vl~Dalvya~htgrg~~a~l~veDvrLA~at   81 (145)
T COG5094          18 RLIHLILRSLGIEEYEPKVPLQLLEFAHRYTQDVLEDALVYAKHTGRGHIATLGVEDVRLALAT   81 (145)
T ss_pred             hHHHHHHHhcCchhhCccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCcccHHHHHHHHHH
Confidence            5678899999999999999999999999999999999999999999999887   999988874

>smart00428 H3 Histone H3

Probab=96.19  E-value=0.035  Score=47.03  Aligned_cols=53  Identities=25%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL   96 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi   96 (361)
                      +| .++.+|++.|.+.++.|+.++...+...|.||+|.+....|+.+|.+--|.
T Consensus        51 ~~-R~~~~Al~aLQeasE~ylv~lfeda~~~a~HAkRvTl~~kDi~La~rir~~  103 (105)
T smart00428       51 DL-RFQSSAIMALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDIQLARRIRGE  103 (105)
T ss_pred             Cc-eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHhhHHHHHHHhcc
Confidence            45 689999999999999999999999999999999999999999998865443

>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.07  E-value=0.034  Score=45.91  Aligned_cols=65  Identities=22%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           32 KVAVAQICERVGFQ-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        32 r~aVAqIL~~~GF~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..-|.+|+-..|=. .-.+.....|-+++..||.+|+..|...|. ++|..+.+.|+..+|+.--..
T Consensus         5 ~~ei~~mmy~~GD~~~P~~eTv~llE~iv~~~i~~l~~~a~~~A~-~r~~k~~~eD~~FliR~D~~K   70 (92)
T cd07978           5 TKEIRQMMYGFGDVQNPLPETVDLLEDIVVEYIIELCHKAAEVAQ-RRRGKVKVEDLIFLLRKDPKK   70 (92)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHhcCHHH
Confidence            45578899888865 456788999999999999999999999999 899999999999999864443

The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy

>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T

Probab=95.96  E-value=0.018  Score=59.25  Aligned_cols=59  Identities=19%  Similarity=0.272  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHhCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHH
Q 018049           28 QAIAKVAVAQICERVGF--QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFD   86 (361)
Q Consensus        28 r~lLr~aVAqIL~~~GF--~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~D   86 (361)
                      ..+.++.+...++..||  .-++..||+.|...+..|+++||..+..||.||||.++...|
T Consensus       354 ~~~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD  414 (414)
T PF15511_consen  354 PGVVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD  414 (414)
T ss_dssp             HHHHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred             ccHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence            34555555666665444  478999999999999999999999999999999999998876

>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.88  E-value=0.038  Score=50.22  Aligned_cols=66  Identities=14%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------CCCCCHHHHHHHHHHcCCC
Q 018049           32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSG--------------RAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        32 r~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~Ag--------------RT~p~~~DV~~AL~dmGi~   97 (361)
                      ..++...|..+||.+..+.....+.-.++.||.+|+..+.+||..-+              +...+..|+.-||+++||+
T Consensus        89 Davt~~yL~~aGf~~~D~rv~RLvsLaAQKfvSDIa~DA~Q~~k~r~~~~~~~~k~~~kdkK~tLtmeDL~~AL~EyGin  168 (176)
T KOG3423|consen   89 DAVTDHYLKKAGFQTSDPRVKRLVSLAAQKFVSDIANDALQHSKIRTKTAIGKDKKQAKDKKYTLTMEDLSPALAEYGIN  168 (176)
T ss_pred             HHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccceeeeHHHHHHHHHHhCcc
Confidence            45788999999999999999999999999999999999999998865              3456789999999999999

>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18)

Probab=95.44  E-value=0.016  Score=47.77  Aligned_cols=63  Identities=19%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             HHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           35 VAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        35 VAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      |.+|+-..|= ..-.+.....+.+++..||.+|+..|..+|...||..+.+.|+..+|+.-...
T Consensus         7 I~~mMy~fGD~~~P~~eTv~lvE~iv~~~i~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~D~~K   70 (93)
T PF02269_consen    7 IRQMMYGFGDVEEPLPETVDLVEDIVREYIIELCQEAMEVAQRRGSKKIKVEDLLFLLRKDPKK   70 (93)
T ss_dssp             CHHHHHCTTS-SS--HHHHHHHHHHHHHHHHHHHHHHHC-------------------------
T ss_pred             HHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCcHHHHHHHHhcCHHH
Confidence            5677777775 35667888999999999999999999999999999999999999999975444

Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.22  E-value=0.079  Score=56.05  Aligned_cols=65  Identities=22%  Similarity=0.205  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..+--+.++.|..+....|...|++-+..-|.+|++.+..|+.|+-|+..+..||..||+-.++.
T Consensus        15 Es~k~vAEslGi~nl~deaa~~La~dv~yrikEI~Q~aaKfm~hskR~kLtv~DV~~ALr~~nVe   79 (576)
T KOG2549|consen   15 ESVKVVAESLGITNLNDEAALLLAEDVEYRIKEIVQDAAKFMVHSKRTKLTVDDVDYALRSLNVE   79 (576)
T ss_pred             HHHHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcCcHHHHHHHHhhcccc
Confidence            44556778899999999999999999999999999999999999999999999999999998887

>PLN00161 histone H3; Provisional

Probab=94.96  E-value=0.096  Score=46.20  Aligned_cols=54  Identities=17%  Similarity=0.065  Sum_probs=49.6

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      +| .++.+||..|.+..+.||-.+...+...|.||+|.+....|+.++.+--|..
T Consensus        76 ~~-Rfq~~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~  129 (135)
T PLN00161         76 PF-RWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPI  129 (135)
T ss_pred             Cc-EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhcccc
Confidence            45 5889999999999999999999999999999999999999999998766665

>PLN00160 histone H3; Provisional

Probab=94.62  E-value=0.13  Score=43.03  Aligned_cols=50  Identities=20%  Similarity=0.057  Sum_probs=46.4

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcC
Q 018049           46 TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLG   95 (361)
Q Consensus        46 sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmG   95 (361)
                      .++.+|++.|.+..+.||-.+...+...|.||+|.+..+.|+.++.+--|
T Consensus        44 Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl~~kD~~L~~rirg   93 (97)
T PLN00160         44 RWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTIMPKDMQLARRIRG   93 (97)
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccccchhhHHHHHHhhc
Confidence            68899999999999999999999999999999999999999998876444

>KOG0870 consensus DNA polymerase epsilon, subunit D [Transcription]

Probab=94.40  E-value=0.16  Score=46.17  Aligned_cols=73  Identities=15%  Similarity=0.151  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           24 DDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        24 def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..+-.+++.+.|-..|... =-+++..|+..|..-+.=|+..|...+..+|.-+.|..++..||..||.+|+..
T Consensus         9 l~lP~AiI~rlvke~l~E~-~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL~Eiefs   81 (172)
T KOG0870|consen    9 LNLPNAIITRLVKEVLPES-NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKALDEIEFS   81 (172)
T ss_pred             hhccHHHHHHHHHHhCccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHhchH
Confidence            3456677888888888765 346899999999999999999999999999999999999999999999999988

>PF03540 TFIID_30kDa: Transcription initiation factor TFIID 23-30kDa subunit; InterPro: IPR003923 Transcription initiation factor TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors

Probab=94.21  E-value=0.21  Score=37.14  Aligned_cols=44  Identities=23%  Similarity=0.293  Sum_probs=40.5

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANL   76 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~   76 (361)
                      .++..+|+.+||++..+.....+.-.++.||.+++..+.+|+.+
T Consensus         6 ~v~~~yL~~~G~~~~D~rv~RLvSLaaQKFisdI~~dA~q~~k~   49 (51)
T PF03540_consen    6 EVTDYYLERSGFQTSDPRVKRLVSLAAQKFISDIANDAMQYCKI   49 (51)
T ss_pred             HHHHHHHHHCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56788999999999999999999999999999999999999865

The complex includes TATA binding protein (TBP) and various TBP-associated factors (TAFS). TFIID a bona fide RNA polymerase II-specific TATA-binding protein-associated factor (TAF) and is essential for viability []. TFIID acts to nucleate the transcription complex, recruiting the rest of the factors through a direct interaction with TFIIB. The TBP subunit of TFIID is sufficient for TATA-element binding and TFIIB interaction, and can support basal transcription. The protein belongs to the TAF2H family.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus

>PLN00121 histone H3; Provisional

Probab=94.18  E-value=0.24  Score=43.79  Aligned_cols=52  Identities=25%  Similarity=0.166  Sum_probs=47.9

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcC
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLG   95 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmG   95 (361)
                      +| .++.+||+.|.+..+.||-.+...+...|.|+.|.+....|+.++.+--|
T Consensus        82 ~~-Rf~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg  133 (136)
T PLN00121         82 DL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG  133 (136)
T ss_pred             cc-eeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhcc
Confidence            56 78999999999999999999999999999999999999999998876444

>PTZ00018 histone H3; Provisional

Probab=94.16  E-value=0.18  Score=44.65  Aligned_cols=53  Identities=25%  Similarity=0.145  Sum_probs=48.3

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL   96 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi   96 (361)
                      +| .++.+||+.|.+..+.||-.+...+...|.||.|.+....|+.++.+--|.
T Consensus        82 ~~-rf~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~  134 (136)
T PTZ00018         82 DL-RFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE  134 (136)
T ss_pred             cc-eeeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhccc
Confidence            56 789999999999999999999999999999999999999999988764443

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=93.61  E-value=0.24  Score=42.62  Aligned_cols=58  Identities=10%  Similarity=-0.079  Sum_probs=52.2

Q ss_pred             HHHHHH-hCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           36 AQICER-VGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        36 AqIL~~-~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      -.+|+. .+...++.+|.-.|+.+++.+..+|...+..+|.+.+|..+++.||.+|++.
T Consensus        27 ~R~Lk~~~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~n   85 (115)
T cd00074          27 HRYLKKGRYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRN   85 (115)
T ss_pred             HHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhc
Confidence            445555 6778999999999999999999999999999999999999999999988873

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=92.19  E-value=0.62  Score=46.66  Aligned_cols=70  Identities=23%  Similarity=0.259  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC--CCCCC
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD--QGFSG  102 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~--~gf~g  102 (361)
                      ..|-.+.++.|...+...++..|.-=++--|.++++.+..|+-|+.||..+..||..||+-+++.  +||.+
T Consensus         9 et~KdvAeslGi~Ni~Dd~l~alamDlEYRI~ev~qea~KFmvhSKRtvLt~dDis~ALr~lNVePLyGyd~   80 (450)
T COG5095           9 ETLKDVAESLGISNIDDDALRALAMDLEYRIKEVCQEASKFMVHSKRTVLTIDDISYALRSLNVEPLYGYDP   80 (450)
T ss_pred             HHHHHHHHHcCCcccccHHHHHHHHhHHHHHHHHHHHHHHHhhcccceeeeHHhHHHHHHhcCCCcccCCCC
Confidence            34556677889999999999999988999999999999999999999999999999999999998  45544

>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]

Probab=91.53  E-value=0.82  Score=41.39  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=60.9

Q ss_pred             CchHHHHHHHHHHHHHHHHHhC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           22 SGDDFSQAIAKVAVAQICERVG--FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        22 ~~def~r~lLr~aVAqIL~~~G--F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      +..+.-|-+==.-|+.|++..=  =--++..|-|++.+.+-+||.=+...|..-|+.-.|.++|-.||..||..+|+.
T Consensus        25 ~~reqDr~LPIANV~RIMK~~lP~naKIsKDAKE~vQECVSEfISFvT~EAsekC~~EkRKTIngdDllwAm~tLGFe  102 (168)
T KOG0869|consen   25 SLREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASEKCQREKRKTINGDDLLWAMSTLGFE  102 (168)
T ss_pred             ccchhhhhccHHHHHHHHHhcCCcccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence            3444444333344666666421  224778999999999999999999999999999999999999999999999998

>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=89.97  E-value=1.2  Score=43.16  Aligned_cols=56  Identities=20%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             hCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-cCCC
Q 018049           42 VGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED-LGLD   97 (361)
Q Consensus        42 ~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d-mGi~   97 (361)
                      .|=....+.+-|.|.+|+..|+.+|...+..+|-|-.-..+-+.||.+.|+. ++|.
T Consensus       168 d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~Nm~  224 (258)
T KOG1142|consen  168 DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNFNME  224 (258)
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeecccccc
Confidence            5566788899999999999999999999999999988888999999999987 5666

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=89.29  E-value=1.4  Score=34.48  Aligned_cols=49  Identities=18%  Similarity=0.138  Sum_probs=41.1

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      ....+.+-+.|.+++..|+.++...+...|-|-+=.++.+.||.+.|+.
T Consensus        16 ~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Ler   64 (68)
T PF03847_consen   16 EKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLER   64 (68)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHh
Confidence            3577899999999999999999999999999988888999999999986

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=88.36  E-value=1.1  Score=40.83  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=39.0

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANL   76 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~   76 (361)
                      .++--.|...||.++.+..-..|.-+++.|+.+|+..+..|..+
T Consensus        92 ~v~DYyl~k~Gf~~~D~rvKkLl~L~aqKFvsDiA~dayqYsrI  135 (197)
T COG5162          92 SVTDYYLEKAGFVTSDQRVKKLLSLLAQKFVSDIAVDAYQYSRI  135 (197)
T ss_pred             HHHHHHHHhcCceeccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666789999999999998999999999999999999999765

>KOG3901 consensus Transcription initiation factor IID subunit [Transcription]

Probab=86.54  E-value=2  Score=36.49  Aligned_cols=68  Identities=18%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHhCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           27 SQAIAKVAVAQICERVGFQ-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        27 ~r~lLr~aVAqIL~~~GF~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ...+..+-+..|+-..|=+ .--+..++.|.+++..||.++.+.+   .+.+.|...-+.|+..+|+.--..
T Consensus         7 rk~lF~Kdl~~mmYgfGDd~nP~~~tv~~Le~iV~~Yi~elt~~a---~~~g~rgk~~veD~~f~lRkDpkK   75 (109)
T KOG3901|consen    7 RKHLFSKDLRSMMYGFGDDVNPYPETVDLLEDIVLEYITELTHAA---MEIGKRGKVKVEDFKFLLRKDPKK   75 (109)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHH---HHhcccCceeHHHHHHHHHhChHH
Confidence            4456667777777655533 2235678999999999999995544   555689999999999999985554

>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]

Probab=85.81  E-value=2.4  Score=38.06  Aligned_cols=67  Identities=19%  Similarity=0.278  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHH-HhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           28 QAIAKVAVAQICE-RVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        28 r~lLr~aVAqIL~-~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ++-+.+.|.-||- .+   .+...|-|.|.+....||..|...+...|+--.+.++.+..|..||+.+|.+
T Consensus        15 kAtv~KmIke~lP~d~---rvakeareliincCvEFI~liSsEAneic~~e~KKTIa~EHV~KALe~LgF~   82 (156)
T KOG0871|consen   15 KATVNKMIKEMLPKDV---RVAKEARELIINCCVEFINLISSEANEICNKEAKKTIAPEHVIKALENLGFG   82 (156)
T ss_pred             HHHHHHHHHHhCCccc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHhcccCCHHHHHHHHHHcchH
Confidence            3455566666665 22   4566899999999999999999999999999999999999999999999998

>COG5248 TAF19 Transcription initiation factor TFIID, subunit TAF13 [Transcription]

Probab=82.31  E-value=3.9  Score=35.05  Aligned_cols=66  Identities=12%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHhCCcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           30 IAKVAVAQICERVGFQT-FQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        30 lLr~aVAqIL~~~GF~s-as~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      +..+-|..++-..|=.. --....+.|-+++..||..++..++..|.  .|...-..|+..||++--+.
T Consensus        10 LF~KDikslmYayGDvv~P~~dt~~~L~e~V~dY~~~~ctna~~~Aq--~rnK~k~eDfkfaLr~DpkK   76 (126)
T COG5248          10 LFMKDIKSLMYAYGDVVAPRYDTAEALHEYVLDYMSILCTNAHNMAQ--VRNKTKTEDFKFALRRDPKK   76 (126)
T ss_pred             HHHHHHHHHHHHhCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHHhhChHH
Confidence            44566777777777442 23467788999999999999999999988  78888899999999986666

>PLN00154 histone H2A; Provisional

Probab=80.96  E-value=4.5  Score=35.84  Aligned_cols=57  Identities=9%  Similarity=-0.175  Sum_probs=48.5

Q ss_pred             HHHHHHhC-C-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           36 AQICERVG-F-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        36 AqIL~~~G-F-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ..+|+.-. + ..+...|.--|+.+++....+|..-+-.+|.-.+++.+++.+|.+|.+
T Consensus        45 ~r~Lk~g~~~~~RVga~ApVYLAAVLEYLtAEVLELAGNaA~d~kk~RItPrHi~lAIr  103 (136)
T PLN00154         45 HRQLKQRVSAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIR  103 (136)
T ss_pred             HHHHHhhhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCceecHHHhhhhcc
Confidence            34577655 3 489999999999999888889999999999999999999999988776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	99.23
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	99.21
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	99.0
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	98.79
1taf_A	68	TFIID TBP associated factor 42; transcription init	98.74
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	98.48
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	98.37
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	98.36
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	98.35
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	98.33
1taf_B	70	TFIID TBP associated factor 62; transcription init	98.28
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	98.28
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	98.2
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	98.17
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	97.93
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	97.85
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	97.79
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	97.77
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	97.55
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	97.52
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	97.28
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	96.88
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	96.84
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	96.57
3r45_A	156	Histone H3-like centromeric protein A; histone fol	96.31
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	96.3
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	96.08
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	95.72
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	95.66
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	95.07
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	95.06
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	94.73
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	94.59
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	94.51
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	94.31
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	93.72
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	93.45
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	92.06
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	91.82
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	89.36
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	88.53
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	88.43
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	84.31

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=99.23  E-value=1.3e-11  Score=101.98  Aligned_cols=81  Identities=21%  Similarity=0.285  Sum_probs=64.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-C
Q 018049           20 KFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-Q   98 (361)
Q Consensus        20 ~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~   98 (361)
                      +....+-.+.+-...|.+|++..|+..++..|.+.|.+++..|+.+|++.+..||+|++|++++..||.+||+.+|.+ +
T Consensus        20 ~~~~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY   99 (103)
T 2yfw_B           20 RKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY   99 (103)
T ss_dssp             ----------CCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred             hhhhhhhhccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence            344455566688889999999999999999999999999999999999999999999999999999999999999876 5


Q ss_pred             CC
Q 018049           99 GF  100 (361)
Q Consensus        99 gf  100 (361)
                      ||
T Consensus       100 Gf  101 (103)
T 2yfw_B          100 GF  101 (103)
T ss_dssp             --
T ss_pred             CC
Confidence            55

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=99.21  E-value=1.5e-11  Score=101.73  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=71.6

Q ss_pred             chHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCCC
Q 018049           23 GDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGFS  101 (361)
Q Consensus        23 ~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf~  101 (361)
                      ..+-.+.+-...|..|++..|+..++..|.+.|.+++..|+.+|++.+..||+|++|++++..||.+||+.+|.+ +||.
T Consensus        23 ~r~~~~gip~~~I~Rlar~~G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lYGf~  102 (103)
T 1tzy_D           23 LRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG  102 (103)
T ss_dssp             CCCGGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEESCC
T ss_pred             hhhhcccCCHHHHHHHHHHcCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCcCCC
Confidence            344444588889999999999999999999999999999999999999999999999999999999999999876 5663

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=99.00  E-value=3.9e-10  Score=93.13  Aligned_cols=81  Identities=20%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-C
Q 018049           20 KFSGDDFSQAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-Q   98 (361)
Q Consensus        20 ~~~~def~r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~   98 (361)
                      +....+..+.|-..+|..|+++.|...++..|.+.|.+++..||++|++.+..||+|++|.+++..||.+||+.+|.+ +
T Consensus        19 ~k~~r~~i~~ip~~~I~Rlar~~Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY   98 (102)
T 1id3_B           19 RKILRDNIQGITKPAIRRLARRGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY   98 (102)
T ss_dssp             -----CCGGGSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred             HHHHHhccCCCCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence            333445555688889999999999999999999999999999999999999999999999999999999999999877 4


Q ss_pred             CC
Q 018049           99 GF  100 (361)
Q Consensus        99 gf  100 (361)
                      ||
T Consensus        99 Gf  100 (102)
T 1id3_B           99 GF  100 (102)
T ss_dssp             SS
T ss_pred             CC
Confidence            55

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=98.79  E-value=8.2e-09  Score=82.20  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCC
Q 018049           30 IAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGF  100 (361)
Q Consensus        30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf  100 (361)
                      +-..+|..|+++.|...++..|.+.|.+++..|+.++++.+..||+|++|.+++..||.+||+.+|.+ +||
T Consensus        11 ip~~~I~Riar~~Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lYgf   82 (84)
T 2hue_C           11 ITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGF   82 (84)
T ss_dssp             SCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEESC
T ss_pred             CCHHHHHHHHHHcCchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCCCC
Confidence            44567889999999999999999999999999999999999999999999999999999999999876 455

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=98.74  E-value=4.4e-08  Score=75.33  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=58.8

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      ++|.+||+++|-+.+++.+...|.+.+.+|..+|++.+..||+||||.+++..||.+|.+.
T Consensus         5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~   65 (68)
T 1taf_A            5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV   65 (68)
T ss_dssp             HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence            5789999999999999999999999999999999999999999999999999999999874

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=98.48  E-value=3.7e-07  Score=69.93  Aligned_cols=61  Identities=23%  Similarity=0.275  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        32 r~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ...|..|++..|-..++..|.+.|.+++..|+.++...+..||+|+||.+++..||.+|++
T Consensus         9 ~a~v~Rl~r~~g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A            9 IAPVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             HHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             hHHHHHHHHHcCcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            3467888899999999999999999999999999999999999999999999999999985

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=98.37  E-value=8.9e-07  Score=74.04  Aligned_cols=68  Identities=19%  Similarity=0.229  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           30 IAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      +-..+|..|.+..|=..++..|.+.|.+++..|+..+++.+..||+||||.+++..||.+||+..|..
T Consensus         8 lP~a~I~Ri~r~~g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~   75 (111)
T 3b0c_T            8 IASSLIKQIFSHYVKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLV   75 (111)
T ss_dssp             --CHHHHHHHHHHHCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred             CCHHHHHHHHHHCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence            33456777888889999999999999999999999999999999999999999999999999998877

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=98.36  E-value=7.9e-07  Score=73.97  Aligned_cols=68  Identities=13%  Similarity=0.202  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHhCC---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           27 SQAIAKVAVAQICERVGF---QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        27 ~r~lLr~aVAqIL~~~GF---~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      ..+-+.-+|.+||+..|=   ..+++.++..|++++.+|+.+|+..+..||.||||.+++..||.++++..
T Consensus        17 LKaal~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn   87 (107)
T 3b0b_B           17 LRAAVHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS   87 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence            344566669999999987   57999999999999999999999999999999999999999999999863

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=98.35  E-value=7e-07  Score=74.85  Aligned_cols=73  Identities=19%  Similarity=0.306  Sum_probs=65.8

Q ss_pred             CCchHHHHHHHHHHHHHHHHHhCCcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           21 FSGDDFSQAIAKVAVAQICERVGFQT---FQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        21 ~~~def~r~lLr~aVAqIL~~~GF~s---as~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      .+..+-..+-|--.|++||+..|=+.   +++.++..|++++.+|+.+|+..+..||.||||.+++..||.++++.
T Consensus        19 ~~~~~rLKaal~y~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr   94 (113)
T 4dra_A           19 FSYQQRLKAAVHYTVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR   94 (113)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHh
Confidence            44455566778889999999998776   99999999999999999999999999999999999999999999885

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=98.33  E-value=1.5e-06  Score=70.26  Aligned_cols=66  Identities=18%  Similarity=0.249  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHHHHh----CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           27 SQAIAKVAVAQICERV----GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        27 ~r~lLr~aVAqIL~~~----GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      ..+-|.-+|++||++.    |.. +++.++..|++++.+|+.+++..+..||.||||.+++..||.++++.
T Consensus        10 LKaal~~~V~ki~~e~~~~~g~~-vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr   79 (90)
T 3v9r_A           10 LKARLWIRVEERLQQVLSSEDIK-YTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK   79 (90)
T ss_dssp             HHHHHHHHHHHHHHHHSCSSCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHhcCce-eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            4456777899999988    443 89999999999999999999999999999999999999999999875

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=98.28  E-value=2.6e-06  Score=65.76  Aligned_cols=60  Identities=22%  Similarity=0.238  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ..|-.|++++|.+..+..|...|++-+..++.+|.+.+..|+.|++|+..+..||.+||+
T Consensus        10 ~~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk   69 (70)
T 1taf_B           10 ESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK   69 (70)
T ss_dssp             HHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence            567889999999999999999999999999999999999999999999999999999985

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.6e-06  Score=73.58  Aligned_cols=62  Identities=16%  Similarity=0.240  Sum_probs=57.9

Q ss_pred             HHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCCC
Q 018049           40 ERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGFS  101 (361)
Q Consensus        40 ~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf~  101 (361)
                      ...|-..++..+.+.+.+++..|+++|++.+..||+|++|.+++..||.+||+..|.+ .||.
T Consensus        58 ~~gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~lygf~  120 (121)
T 2ly8_A           58 VPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGFG  120 (121)
T ss_dssp             CCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGGGGCC
T ss_pred             CccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcCCCCC
Confidence            3478999999999999999999999999999999999999999999999999999998 5553

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=98.20  E-value=2.3e-06  Score=74.08  Aligned_cols=66  Identities=12%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHhCCcc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           28 QAIAKVAVAQICERVGFQT---FQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        28 r~lLr~aVAqIL~~~GF~s---as~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      .+-|.-+|++||+..|=..   +++.++..|++++.+|+.+|+..+..||.||||.+++..||.++++.
T Consensus        18 KaAl~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rr   86 (140)
T 3vh5_A           18 RAAVHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARR   86 (140)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            4456678999999875443   89999999999999999999999999999999999999999999986

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=98.17  E-value=1.4e-06  Score=81.26  Aligned_cols=73  Identities=15%  Similarity=0.257  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC-CCC
Q 018049           28 QAIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD-QGF  100 (361)
Q Consensus        28 r~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~-~gf  100 (361)
                      +.++...+..+++..|-..++..+.+.+.+++..|+++|++.+..||+||+|.+++..||.+||+.+|-+ +||
T Consensus       160 rD~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~gr~lYGf  233 (235)
T 2l5a_A          160 RDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLYGF  233 (235)
T ss_dssp             HHHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcCCccccC
Confidence            3344433446788999999999999999999999999999999999999999999999999999998765 444

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=97.93  E-value=3e-05  Score=58.74  Aligned_cols=61  Identities=18%  Similarity=0.135  Sum_probs=55.0

Q ss_pred             HHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           34 AVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        34 aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      .|..|+++.|=..++..|++.|.+.++.||..|...+..+|.|++|.+.+..||..|++.+
T Consensus         7 ~v~Ri~k~~~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l   67 (68)
T 1b67_A            7 PIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   67 (68)
T ss_dssp             HHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred             HHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            3555666667778999999999999999999999999999999999999999999999865

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.85  E-value=0.00014  Score=58.45  Aligned_cols=65  Identities=20%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             HHHHHHHHHhCC--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           33 VAVAQICERVGF--QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        33 ~aVAqIL~~~GF--~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..|..|.+..|=  ..++..|++.|+..+..||..|+..+..+|.+++|.+++..||..|++.+|..
T Consensus        12 a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~   78 (93)
T 1n1j_A           12 ANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD   78 (93)
T ss_dssp             HHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCG
T ss_pred             hHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence            346677777753  57999999999999999999999999999999999999999999999988887

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=97.79  E-value=5.9e-05  Score=66.43  Aligned_cols=65  Identities=18%  Similarity=0.130  Sum_probs=62.1

Q ss_pred             HHHHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           33 VAVAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        33 ~aVAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..|..|++.. |=..++..|-+.|.+++..|+..+.+.+..||+|+||.+++..||..||..+|+.
T Consensus         8 a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~   73 (154)
T 1f1e_A            8 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE   73 (154)
T ss_dssp             HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCT
T ss_pred             cHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccc
Confidence            4678888888 9999999999999999999999999999999999999999999999999999887

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=97.77  E-value=6.4e-05  Score=66.18  Aligned_cols=62  Identities=21%  Similarity=0.275  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      ..|..|++..|-..++..|.+.|.+++..|+..|.+.+..||+|++|.+++..||.+||+..
T Consensus        86 a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~  147 (154)
T 1f1e_A           86 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS  147 (154)
T ss_dssp             HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence            45889999999999999999999999999999999999999999999999999999999873

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=97.55  E-value=0.00047  Score=62.01  Aligned_cols=65  Identities=18%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             HHHHHHHHHhC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           33 VAVAQICERVG-FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        33 ~aVAqIL~~~G-F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..|..|++.++ =..++..|.+.|++.+..||..|+..+...|.+.+|.+++..||..||+++|+.
T Consensus        19 A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~   84 (179)
T 1jfi_B           19 AAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG   84 (179)
T ss_dssp             HHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred             HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChH
Confidence            45566666664 257899999999999999999999999999999999999999999999999998

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=97.52  E-value=0.00068  Score=57.84  Aligned_cols=64  Identities=16%  Similarity=0.172  Sum_probs=58.5

Q ss_pred             HHHHHHHHhC--CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           34 AVAQICERVG--FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        34 aVAqIL~~~G--F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      .|..|++.++  -..++..|...|+..+..||..|+..+..+|.+.+|.+++..||..||..+|..
T Consensus        14 ~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~   79 (128)
T 2byk_B           14 VIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE   79 (128)
T ss_dssp             HHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence            4667777654  567999999999999999999999999999999999999999999999999987

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=97.28  E-value=0.0013  Score=51.00  Aligned_cols=60  Identities=5%  Similarity=-0.079  Sum_probs=51.9

Q ss_pred             HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           35 VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        35 VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      |..|++++ +=..++..|.+.+.+.+..|+..|+..+...|.+++|.+.+..||..|++++
T Consensus        10 V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l   70 (76)
T 3b0c_W           10 LRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI   70 (76)
T ss_dssp             HHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            44555532 4346889999999999999999999999999999999999999999999864

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=96.88  E-value=0.0053  Score=48.04  Aligned_cols=54  Identities=22%  Similarity=0.087  Sum_probs=49.7

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL   96 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi   96 (361)
                      |=..++.+|+..|.+..+.|+..|...+...|.||+|.+..+.|+.+|.+--|.
T Consensus        22 ~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~   75 (77)
T 2hue_B           22 TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE   75 (77)
T ss_dssp             SSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence            335789999999999999999999999999999999999999999999887664

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=96.84  E-value=0.0052  Score=48.63  Aligned_cols=53  Identities=21%  Similarity=0.144  Sum_probs=48.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..++.+|+..|.+..+.|+..|...+...|.||+|.+..+.|+.+|.+--|..
T Consensus        26 ~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~~   78 (82)
T 3nqj_A           26 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE   78 (82)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcccc
Confidence            37899999999999999999999999999999999999999999999877765

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=96.57  E-value=0.008  Score=52.03  Aligned_cols=53  Identities=21%  Similarity=0.144  Sum_probs=48.8

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..++.+|++.|.+.++.||..|...+...|.||+|.++...||.+|.+--|+.
T Consensus        84 ~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~~  136 (140)
T 3nqu_A           84 FNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGLE  136 (140)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC--
T ss_pred             ceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhcccc
Confidence            36899999999999999999999999999999999999999999999987776

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=96.31  E-value=0.012  Score=51.74  Aligned_cols=65  Identities=20%  Similarity=0.149  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHhC---CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018049           32 KVAVAQICERVG---FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL   96 (361)
Q Consensus        32 r~aVAqIL~~~G---F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi   96 (361)
                      .+.|..|++...   =..++.+|++.|.+.++.||..|...+...|.||+|.++...||.+|.+--|.
T Consensus        84 ~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~  151 (156)
T 3r45_A           84 SRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL  151 (156)
T ss_dssp             HHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence            344445554321   13688999999999999999999999999999999999999999999875443

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=96.30  E-value=0.012  Score=48.15  Aligned_cols=48  Identities=17%  Similarity=0.092  Sum_probs=45.3

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ..++.+|+..|.+.++.|+..|...+...|.||+|.+....|+.+|.+
T Consensus        51 ~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r   98 (100)
T 2yfv_A           51 LRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR   98 (100)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence            358899999999999999999999999999999999999999999875

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=96.08  E-value=0.022  Score=49.00  Aligned_cols=54  Identities=22%  Similarity=0.083  Sum_probs=49.7

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCC
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGL   96 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi   96 (361)
                      |=..++.+|++.|.+..+.||..|...+...|.||+|.+....||.+|.+--|.
T Consensus        81 ~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~  134 (136)
T 1tzy_C           81 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE  134 (136)
T ss_dssp             TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred             hhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence            335789999999999999999999999999999999999999999999887664

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=95.72  E-value=0.022  Score=46.02  Aligned_cols=62  Identities=15%  Similarity=0.035  Sum_probs=56.0

Q ss_pred             HHHHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           33 VAVAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        33 ~aVAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      .-|..|++..+. ..++..|...++..++.|+.+|+..+..+|...+|...+..||..|++..
T Consensus        23 arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~   85 (97)
T 1n1j_B           23 ARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF   85 (97)
T ss_dssp             HHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred             HHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcC
Confidence            346788888877 57999999999999999999999999999999999999999999998753

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=95.66  E-value=0.02  Score=48.29  Aligned_cols=59  Identities=8%  Similarity=-0.069  Sum_probs=53.9

Q ss_pred             HHHHHHHhC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           35 VAQICERVG-FQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        35 VAqIL~~~G-F~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      |.++|+..+ ...++..|--.|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus        28 i~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n   87 (120)
T 2f8n_G           28 MLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN   87 (120)
T ss_dssp             HHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             HHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence            456688888 56899999999999999999999999999999999999999999999883

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=95.07  E-value=0.021  Score=48.67  Aligned_cols=69  Identities=12%  Similarity=-0.054  Sum_probs=58.1

Q ss_pred             HHHHHHHHHH---HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           25 DFSQAIAKVA---VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        25 ef~r~lLr~a---VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      --.++-|+--   |-++|+.. +...++..|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus        18 rS~ragLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n   90 (129)
T 1tzy_A           18 RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN   90 (129)
T ss_dssp             HHHHHTCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             ccccCceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence            3345544433   45567764 888999999999999999999999999999999999999999999999883

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=95.06  E-value=0.035  Score=47.29  Aligned_cols=70  Identities=9%  Similarity=-0.130  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHH---HHHHHHHhCC-c-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           24 DDFSQAIAKVA---VAQICERVGF-Q-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        24 def~r~lLr~a---VAqIL~~~GF-~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      .--.++-|+--   |..+|+..++ . .++..|--.|+.+++.+..+|...+-.+|.+.+|+.+++.||.+|.+.
T Consensus        19 srS~ragLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n   93 (128)
T 1f66_C           19 SRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG   93 (128)
T ss_dssp             CHHHHHTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred             CccccCCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence            34455555444   4567888885 3 899999999999999999999999999999999999999999999884

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=94.73  E-value=0.11  Score=44.03  Aligned_cols=60  Identities=12%  Similarity=0.123  Sum_probs=53.7

Q ss_pred             HHHHHHHhCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           35 VAQICERVGFQ-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        35 VAqIL~~~GF~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      |-.+|++++-+ +++..|++.+..++...++.|+..+...+.+.+|.+.+..||..|.+.+
T Consensus        39 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl   99 (123)
T 2nqb_D           39 IYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL   99 (123)
T ss_dssp             HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            44556666766 7899999999999999999999999999999999999999999999864

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=94.59  E-value=0.12  Score=43.95  Aligned_cols=60  Identities=15%  Similarity=0.164  Sum_probs=54.2

Q ss_pred             HHHHHHHhCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           35 VAQICERVGFQ-TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        35 VAqIL~~~GF~-sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      |-.+|++++-+ +++..|+..+..++...++.|+..+...+.+.+|.+.+..||..|.+.+
T Consensus        42 IyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl  102 (126)
T 1tzy_B           42 VYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL  102 (126)
T ss_dssp             HHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence            45566777777 7999999999999999999999999999999999999999999999864

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=94.51  E-value=0.063  Score=45.84  Aligned_cols=59  Identities=12%  Similarity=-0.046  Sum_probs=53.7

Q ss_pred             HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           35 VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        35 VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      |.++|+.. +...++..|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus        31 I~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n   90 (131)
T 1id3_C           31 VHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN   90 (131)
T ss_dssp             HHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             HHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence            45667764 788999999999999999999999999999999999999999999999883

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=94.31  E-value=0.13  Score=43.45  Aligned_cols=68  Identities=10%  Similarity=-0.059  Sum_probs=57.8

Q ss_pred             HHHHHHHHH---HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           26 FSQAIAKVA---VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        26 f~r~lLr~a---VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      -.++-|+--   |-++|+.. +...++..|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus        17 s~ragL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n   88 (123)
T 2nqb_C           17 SNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN   88 (123)
T ss_dssp             HHHHTCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred             cccCCeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence            345544433   44557775 788999999999999999999999999999999999999999999999883

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=93.72  E-value=0.19  Score=43.80  Aligned_cols=68  Identities=12%  Similarity=-0.056  Sum_probs=58.1

Q ss_pred             HHHHHHHHH---HHHHHHHh-CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           26 FSQAIAKVA---VAQICERV-GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        26 f~r~lLr~a---VAqIL~~~-GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      -.++-|+--   |.++|+.. +...+...|-..|+.+++.+..+|...+-.+|.+++|+.+++.||.+|.+.
T Consensus        38 S~ragLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n  109 (149)
T 2f8n_K           38 SSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN  109 (149)
T ss_dssp             HHHHTCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             cccCCeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence            345544433   45667775 888999999999999999999999999999999999999999999999884

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=93.45  E-value=0.12  Score=41.66  Aligned_cols=59  Identities=10%  Similarity=-0.028  Sum_probs=49.9

Q ss_pred             HHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           35 VAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        35 VAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      |-.|++..+. ..++..|.-.|+.+++-|+.+|+..+..+|...+|...+..||..|.+.
T Consensus        17 IkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~   76 (98)
T 1jfi_A           17 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIEL   76 (98)
T ss_dssp             HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-
T ss_pred             HHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhc
Confidence            5677787766 6899999999999999999999999999999999999999999887764

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=92.06  E-value=0.33  Score=40.52  Aligned_cols=59  Identities=15%  Similarity=0.049  Sum_probs=51.5

Q ss_pred             HHHHHHH-hCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           35 VAQICER-VGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        35 VAqIL~~-~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      |..|++. -....++..|...++..++-||..|...|..+|...+|...+..||..|+..
T Consensus        47 IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~  106 (119)
T 4g92_C           47 IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSK  106 (119)
T ss_dssp             HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTT
T ss_pred             HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhc
Confidence            3445543 3456899999999999999999999999999999999999999999999875

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=91.82  E-value=0.75  Score=41.34  Aligned_cols=61  Identities=8%  Similarity=0.092  Sum_probs=53.1

Q ss_pred             HHHHHHHHhCC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           34 AVAQICERVGF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        34 aVAqIL~~~GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      .|-.+|++++- .+++..|++.|..++.+.+..|+..+...+.+.+|.+++..||..|.+.+
T Consensus         8 yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~   69 (192)
T 2jss_A            8 YIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI   69 (192)
T ss_dssp             HHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred             HHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence            34455666655 46999999999999999999999999999999999999999999999853

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=89.36  E-value=1  Score=40.48  Aligned_cols=59  Identities=10%  Similarity=-0.113  Sum_probs=52.3

Q ss_pred             HHHHHHHh-CC-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           35 VAQICERV-GF-QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        35 VAqIL~~~-GF-~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      |.++|+.. +. ..++..|-..|+.+++.+..+|...+-.+|.+++|+..++.|+.+|.+.
T Consensus       111 i~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n  171 (192)
T 2jss_A          111 IKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG  171 (192)
T ss_dssp             HHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred             HHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence            45567765 44 4899999999999999999999999999999999999999999999883

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=88.53  E-value=0.76  Score=42.78  Aligned_cols=52  Identities=17%  Similarity=0.062  Sum_probs=48.6

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           46 TFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        46 sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..+.+|+..|.+..+.||-.|...+...|.||.|.+..+.|+.+|.+--|..
T Consensus        36 Rfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~~   87 (235)
T 2l5a_A           36 RWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQF   87 (235)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCSC
T ss_pred             eecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhcc
Confidence            5788999999999999999999999999999999999999999998876655

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=88.43  E-value=1.8  Score=33.54  Aligned_cols=61  Identities=23%  Similarity=0.121  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           30 IAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        30 lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      -|+..|.+|.   +=....+.+-+.|.+++..|+.++...+...|-|-+=....+.||.+.|+.
T Consensus        10 ~L~~Lv~~id---p~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler   70 (76)
T 1h3o_B           10 KLQDLVREVD---PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER   70 (76)
T ss_dssp             HHHHHHHHHC---SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred             HHHHHHHhcC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence            3444455553   345678899999999999999999999999999977777899999999986

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=84.31  E-value=1.5  Score=37.67  Aligned_cols=60  Identities=10%  Similarity=-0.046  Sum_probs=49.5

Q ss_pred             HHHHHHHhC-CcccchhHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCCHHHHHHHHHHc
Q 018049           35 VAQICERVG-FQTFQQSALGKLADIAVRYINSVGKAANFYA-NLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        35 VAqIL~~~G-F~sas~sALe~Ltdl~~~YI~~L~~~a~~yA-e~AgRT~p~~~DV~~AL~dm   94 (361)
                      |-.|++... ...++..|.-.++..+.-||..|+..+..+| ...+|...+..||..|+...
T Consensus        25 IKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~   86 (140)
T 2byk_A           25 VRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKN   86 (140)
T ss_dssp             ----CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTC
T ss_pred             HHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcC
Confidence            344555433 3478999999999999999999999999999 99999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	98.61
d1tafa_	68	TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta	98.38
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	98.23
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	97.88
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	97.55
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	97.44
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	97.4
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	97.37
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	96.95
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	96.89
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	96.28
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	94.54
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	94.29
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	93.71
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	85.71
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	83.31

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.61  E-value=2.6e-08  Score=77.23  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           29 AIAKVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        29 ~lLr~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      .|-+.+|..|+++.|...++.++.+.|.+++..|+.++++.+..||+|++|.+.+..||.+||+.+|-+
T Consensus         9 gI~k~~i~Riar~~Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alkr~g~p   77 (82)
T d2huec1           9 GITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRT   77 (82)
T ss_dssp             SSCHHHHHHHHHHTTCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEE
T ss_pred             CcCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhcCCC
Confidence            355678999999999999999999999999999999999999999999999999999999999988755

>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)42
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.38  E-value=8e-07  Score=66.36  Aligned_cols=60  Identities=20%  Similarity=0.353  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ++|.+||++.|.+..++.....|.|.+-+|..++...+.-|++||||++++..||.+|..
T Consensus         5 ~~i~~iL~~~GV~~yeprV~~qlLef~yRYtt~VL~DA~vys~HA~k~~id~dDVkLAi~   64 (68)
T d1tafa_           5 QVIMSILKELNVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE   64 (68)
T ss_dssp             HHHHHHHHHTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999976

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=98.23  E-value=3e-06  Score=62.54  Aligned_cols=62  Identities=18%  Similarity=0.134  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      ..|-.|+++.|-..++..|.+.|...+..||.+|+..+..||.+++|.+.+..||..||+.+
T Consensus         7 a~I~ri~k~~~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk~~   68 (68)
T d1htaa_           7 APIGRIIKNAGAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF   68 (68)
T ss_dssp             HHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHTC
T ss_pred             HHHHHHHHHCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhC
Confidence            45667788899999999999999999999999999999999999999999999999999853

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=97.88  E-value=2e-05  Score=57.70  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=55.6

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ..|-.|++..|=..++..|.+.|+..+..||..|+..+..||++++|.+++..||..||+
T Consensus         6 a~I~rI~k~~~~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al~   65 (66)
T d1ku5a_           6 APVDRLIRKAGAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   65 (66)
T ss_dssp             HHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             HHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHh
Confidence            346677788888899999999999999999999999999999999999999999999985

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.55  E-value=0.00012  Score=61.90  Aligned_cols=61  Identities=21%  Similarity=0.291  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           33 VAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        33 ~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      ..|-.|+++.|...++..|++.|+..+..|+.+|...+..||.|++|.+.+..||.+|+..
T Consensus        83 a~IkRi~k~~g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~~~DI~~Av~~  143 (151)
T d1f1ea_          83 ATVRRILKRAGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY  143 (151)
T ss_dssp             HHHHHHHHHTTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence            3456677889999999999999999999999999999999999999999999999999986

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00062  Score=52.08  Aligned_cols=64  Identities=20%  Similarity=0.216  Sum_probs=58.5

Q ss_pred             HHHHHHHHh--CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           34 AVAQICERV--GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        34 aVAqIL~~~--GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      .|..|+++.  +-..++..|...++..+..||..|+..+...|...+|.+++..||..|++++|..
T Consensus         7 ~v~ri~K~~~p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~~~~~~   72 (87)
T d1n1ja_           7 NVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD   72 (87)
T ss_dssp             HHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHcCcH
Confidence            466777754  5677999999999999999999999999999999999999999999999999977

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.40  E-value=0.00036  Score=51.87  Aligned_cols=61  Identities=21%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 018049           32 KVAVAQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLE   92 (361)
Q Consensus        32 r~aVAqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~   92 (361)
                      ..+|-.|.++.|+...+..+...|.+=+.--|.++.+.+..|+.|+.|+..+..||-.||+
T Consensus         9 ~esik~iAeS~Gi~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALk   69 (70)
T d1tafb_           9 AESMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK   69 (70)
T ss_dssp             HHHHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHc
Confidence            3567788999999999999999999999999999999999999999999999999999985

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.37  E-value=0.00082  Score=51.65  Aligned_cols=63  Identities=16%  Similarity=0.193  Sum_probs=57.0

Q ss_pred             HHHHHHHh--CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           35 VAQICERV--GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        35 VAqIL~~~--GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      |..|+++.  .-..++..|+..++..+.-||..|+..+...|...+|..++..||..||.++|..
T Consensus         5 i~ri~K~~~p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~~~~f~   69 (89)
T d2bykb1           5 IGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE   69 (89)
T ss_dssp             HHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred             HHHHHHHhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHCCcH
Confidence            45566643  5677999999999999999999999999999999999999999999999999987

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.0029  Score=52.20  Aligned_cols=53  Identities=21%  Similarity=0.247  Sum_probs=51.4

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..++..|...|+..+..||..|+..+...|...+|.+++..||..||..+|..
T Consensus        21 ~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~~f~   73 (135)
T d1jfib_          21 VRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFG   73 (135)
T ss_dssp             CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTG
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCcH
Confidence            57999999999999999999999999999999999999999999999999987

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.89  E-value=0.0022  Score=53.80  Aligned_cols=65  Identities=18%  Similarity=0.162  Sum_probs=60.5

Q ss_pred             HHHHHHHHH-hCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCC
Q 018049           33 VAVAQICER-VGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLGLD   97 (361)
Q Consensus        33 ~aVAqIL~~-~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmGi~   97 (361)
                      ..|..++++ .|=..++..|.+.|.+++..|+..|+..+..+|++++|.+.+..||..++..+|..
T Consensus         5 a~I~rilk~~~~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~edi~~a~~~~~~~   70 (151)
T d1f1ea_           5 AAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVE   70 (151)
T ss_dssp             HHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCT
T ss_pred             cHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccc
Confidence            467788875 58889999999999999999999999999999999999999999999999998877

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=96.28  E-value=0.012  Score=45.91  Aligned_cols=52  Identities=23%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHcC
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDLG   95 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dmG   95 (361)
                      ++ .++.+|++.|.+.++.||-++...+...|.|++|.+....|+.++..--|
T Consensus        41 ~~-r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~~kD~~LarrirG   92 (95)
T d1tzyc_          41 DL-RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG   92 (95)
T ss_dssp             TC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred             CC-EeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCCHHHHHHHHHHhc
Confidence            55 58999999999999999999999999999999999999999999987654

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.046  Score=46.67  Aligned_cols=58  Identities=12%  Similarity=-0.061  Sum_probs=52.3

Q ss_pred             HHHHHHhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           36 AQICERVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        36 AqIL~~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      ..+|+..+-..++.+|--.|+.+++.+..+|...+..||.+++|..+++.||..|++.
T Consensus       106 ~rlLk~~~a~RVs~~A~vyLaavLEyl~aeILelAgn~a~~~krkrItp~dI~lAi~n  163 (172)
T d1q9ca_         106 HPLLKEVLGYKIDHQVSVYIVAVLEYISADILKLAGNYVRNIRHYEITKQDIKVAMCA  163 (172)
T ss_dssp             HHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBCCHHHHHHHHHT
T ss_pred             HHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCceecHHHHHHHHhC
Confidence            4455566666899999999999999999999999999999999999999999999874

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.29  E-value=0.05  Score=40.00  Aligned_cols=59  Identities=15%  Similarity=0.058  Sum_probs=51.3

Q ss_pred             HHHHHH-hCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           36 AQICER-VGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        36 AqIL~~-~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      -.|++. -....++..|+..++..++.|+..|+..+...|...+|...+..||..+++..
T Consensus         7 krImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~~   66 (78)
T d1n1jb_           7 KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF   66 (78)
T ss_dssp             HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC
T ss_pred             HHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhcC
Confidence            344442 34567899999999999999999999999999999999999999999998753

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.056  Score=38.61  Aligned_cols=56  Identities=9%  Similarity=-0.009  Sum_probs=46.0

Q ss_pred             HHHHHH-HhCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Q 018049           35 VAQICE-RVGFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQG   90 (361)
Q Consensus        35 VAqIL~-~~GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~A   90 (361)
                      |-.|++ .-....++.+|+..|+..++-|+.+|...+..+|...+|...+..||..|
T Consensus         8 Vkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~a   64 (66)
T d1jfia_           8 IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC   64 (66)
T ss_dssp             HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred             HHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence            345555 34566899999999999999999999999999999999999999999765

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=85.71  E-value=1.6  Score=33.11  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHc
Q 018049           45 QTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLEDL   94 (361)
Q Consensus        45 ~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~dm   94 (361)
                      .+++..|+..+..++...++.|+..|...|....|.+.+..||..|.+.+
T Consensus        20 ~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL~   69 (92)
T d1tzyb_          20 TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL   69 (92)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999998853

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.31  E-value=3.2  Score=30.18  Aligned_cols=51  Identities=25%  Similarity=0.154  Sum_probs=45.6

Q ss_pred             CCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Q 018049           43 GFQTFQQSALGKLADIAVRYINSVGKAANFYANLSGRAEGNVFDIFQGLED   93 (361)
Q Consensus        43 GF~sas~sALe~Ltdl~~~YI~~L~~~a~~yAe~AgRT~p~~~DV~~AL~d   93 (361)
                      +=....+.+-+.|.+++..|+.++...+...|-|-+=....+.||.+.|+.
T Consensus        18 p~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~LeR   68 (74)
T d1h3ob_          18 PNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER   68 (74)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Confidence            344577899999999999999999999999999977777899999999986