Citrus Sinensis ID: 018063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHccccHHHHEEcccccEEEEEccccccccccccccccccccccccEEEEccHHHHHHcccccccccccccccHHHHccccccccccccccHHHcccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEcHHcHHHHHHHccHHHHHEEEcccccEEEEEEcccccccccEEcccccccccccccEEEccccHHHcccccEEEEccccHHHHHHHccccccccccccHcccccccccHHHHHEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYyatkptwkivttdctcsissccfnffsnvtnqhsktlhFTNLTHIIKNKCTWVIKAKGNDEAIAHVKekkndnaqttsESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFvmsaipflpfvfwarddvktrnaGIELGLWVSLGYFVEALGlltsdagrASFISLFTVIVVplfdgmlgaiipahTWFGVLISALGVGmlecsgsppsvgdFLNFLSAIFFGIHMLRTerisrstkkenflplLGYEICVVALLSTIWVLVggwfdssqdfdqspwtwtMLWDWmvtfpwvpalyTGIFSTGICLWIEVS
Flexible Loop (DISEMBL)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHvkekkndnaqttsesvqiitkrpfwkRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS
Low Complexity Region (SEG)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVttdctcsissccfnffsnvtnQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS
Disordered region (IsUnstruct)
*****************SMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIA****************VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE**
Disordered Region (DISOPRED)
***********IASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKN***************************************************IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS
Disordered Region (DISEMBL)
*********KTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEK***********VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS
Disordered Region (DISPRO)
*Y*FSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVK*******************RPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYEFSSATRKTIASLNSSMAMTYYYATKPTWKIVTTDCTCSISSCCFNFFSNVTNQHSKTLHFTNLTHIIKNKCTWVIKAKGNDEAIAHVKEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
O29470	308	Uncharacterized transport	yes	no	0.429	0.503	0.289	2e-07

>sp|O29470|Y788_ARCFU Uncharacterized transporter AF_0788 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_0788 PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 11/166 (6%)

Query: 122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-FWARDDVK 180
           K++ +   L ++ +++ S  P++K A + M P +F  VRF ++ + FLPF+  W   D  
Sbjct: 39  KRLYADLGLALVALIWGSTFPVVKIALDSMSPFAFNTVRFFIACLFFLPFLKGWDFKD-- 96

Query: 181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWF 239
               G ++G+   LGY  + +GL  + A  A FI+   V++ P+   ++   +       
Sbjct: 97  ----GFKIGIASFLGYTFQTVGLDYTTATNAGFITSTYVVLAPIISWLVYKDVFDKRDVS 152

Query: 240 GVLISALGVGMLECSG-SPPSVGDFLNFLSAIFFGIHMLRTERISR 284
           GVL++ +G   L  SG S  ++GD L    A+FFG  +      SR
Sbjct: 153 GVLLAFVGFYFL--SGYSGFNIGDILMLFCALFFGAEIAMISHYSR 196

Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
225456145	461	PREDICTED: uncharacterized protein LOC10	0.927	0.726	0.601	1e-115
225424254	460	PREDICTED: uncharacterized transporter A	0.695	0.545	0.729	1e-107
255570144	458	conserved hypothetical protein [Ricinus	0.698	0.550	0.706	1e-105
449449134	464	PREDICTED: uncharacterized protein LOC10	0.709	0.551	0.618	4e-92
449520623	452	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.709	0.566	0.610	1e-89
411113256	436	integral membrane protein [Triticum aest	0.739	0.612	0.573	2e-88
326490417	430	predicted protein [Hordeum vulgare subsp	0.739	0.620	0.581	5e-88
411113259	440	integral membrane protein [Triticum aest	0.739	0.606	0.576	5e-88
224111492	315	predicted protein [Populus trichocarpa]	0.584	0.669	0.720	3e-87
411113263	440	integral membrane protein [Triticum urar	0.739	0.606	0.565	7e-87

>gi|225456145|ref|XP_002278448.1| PREDICTED: uncharacterized protein LOC100247357 [Vitis vinifera] gi|297734319|emb|CBI15566.3| unnamed protein product [Vitis vinifera]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/354 (60%), Positives = 261/354 (73%), Gaps = 19/354 (5%)

Query: 26  ATKPTWKIVTTDCTCSISS--CCFNFFSNVTNQHSKTLHFTNLTHIIKN----------K 73
           AT P WK + T  +   S+  CCF FFS   +  +K   F   + ++ N          K
Sbjct: 3   ATYPRWKTIATTSSSDSSTLPCCF-FFSTSPSPRTKRGRFATFSSLLLNPHEYHLGPAKK 61

Query: 74  CTWVIKAKGNDEAIAHVKEKKNDNAQTTSE-----SVQIITK-RPFWKRVLFASKKIRSI 127
              V   + + + ++ + +K    A+  ++     S+Q   K RP W+RVLFASKK++SI
Sbjct: 62  KKSVEIGRPHQQTVSIIHDKCISKAKVKAKFDWKKSIQKGAKSRPLWRRVLFASKKMKSI 121

Query: 128 FLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIE 187
            LLNV+TIVYAS+I ++K  E IM PA+F AVRF +SAIPFLPFVF AR DV+TRNAG+E
Sbjct: 122 ILLNVVTIVYASNIAVVKEVETIMDPAAFSAVRFAVSAIPFLPFVFRARGDVQTRNAGLE 181

Query: 188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALG 247
           LGLW+SLGY  EALGLLTS+AGRASF S  TVIVVPL D MLGAI+PA TWFGVL+S LG
Sbjct: 182 LGLWISLGYLAEALGLLTSEAGRASFFSFITVIVVPLLDSMLGAIVPARTWFGVLMSVLG 241

Query: 248 VGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLST 307
           V MLECSGSPP+VGD LNFLSAIFFGIH+LRTE++SRSTKKENFLPLLGYE+CVVALLST
Sbjct: 242 VAMLECSGSPPNVGDLLNFLSAIFFGIHILRTEQLSRSTKKENFLPLLGYEVCVVALLST 301

Query: 308 IWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEVS 361
            W ++GGWFD  QD DQ+ WTW +LWD MV FPW+PALYTG+FSTG+CLW+E+ 
Sbjct: 302 FWYVIGGWFDGIQDSDQASWTWAVLWDSMVAFPWIPALYTGVFSTGLCLWLEIG 355

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424254|ref|XP_002280818.1| PREDICTED: uncharacterized transporter AF_0788 [Vitis vinifera] gi|297737689|emb|CBI26890.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/251 (72%), Positives = 214/251 (85%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           +R  W+R+LFAS+K+R I LLNV+T+VYAS+IP++K  E IM PA+F AVRFV+SAIPF+
Sbjct: 110 RRSLWRRILFASRKVRGIILLNVLTVVYASNIPVVKEVEAIMDPATFAAVRFVVSAIPFI 169

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFV  AR DV+TRNAGIELG WVSLGY +++LGLLTSDAGRASF+S+FTVIVVPL DGML
Sbjct: 170 PFVVRARGDVQTRNAGIELGFWVSLGYLMQSLGLLTSDAGRASFLSMFTVIVVPLLDGML 229

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA +PAHTWFG L+S LGV MLE SGSPPSVGD LNFLSA+FFG+HMLRTE ISRST +E
Sbjct: 230 GATVPAHTWFGALMSILGVAMLESSGSPPSVGDLLNFLSAVFFGVHMLRTEHISRSTSRE 289

Query: 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349
           NFLPLLGYE+C+VAL STIW  VGG F + Q+ D S   WTMLWDWMV FPW+PA YTGI
Sbjct: 290 NFLPLLGYEVCIVALFSTIWYFVGGSFGAIQECDLSSGMWTMLWDWMVAFPWIPAFYTGI 349

Query: 350 FSTGICLWIEV 360
            STG+CLWIE+
Sbjct: 350 ISTGLCLWIEM 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570144|ref|XP_002526034.1| conserved hypothetical protein [Ricinus communis] gi|223534681|gb|EEF36374.1| conserved hypothetical protein [Ricinus communis]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 214/252 (84%)

Query: 110 KRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFL 169
           ++  WKR++FAS K+RSI LLNVIT+VYAS+IP++K  E IM PA+F  VRF +SAIPF+
Sbjct: 104 RKSLWKRIVFASTKVRSIILLNVITVVYASNIPVVKEVEAIMDPATFTVVRFAVSAIPFI 163

Query: 170 PFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML 229
           PFVF AR DVKTRNAGIELG WVSLGY  +ALGL+TSDAGRASFIS+FTVI+VPL DGML
Sbjct: 164 PFVFQARGDVKTRNAGIELGFWVSLGYLTQALGLMTSDAGRASFISMFTVILVPLLDGML 223

Query: 230 GAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKE 289
           GA++PA TWFG L+S +GV MLE SGSPP++GD LNFLSA+FFGIHMLRTE +SRST ++
Sbjct: 224 GAVVPARTWFGALMSIIGVAMLEFSGSPPNIGDLLNFLSAVFFGIHMLRTEHVSRSTNEK 283

Query: 290 NFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI 349
           NFLPLLGYE+CVVA  ST+W  + G FD  Q  D S WTWTM+W W+VTFPW+PALYTG+
Sbjct: 284 NFLPLLGYEVCVVACFSTLWYFIEGGFDGIQACDPSSWTWTMVWHWIVTFPWIPALYTGV 343

Query: 350 FSTGICLWIEVS 361
           FSTG+CLWIE++
Sbjct: 344 FSTGLCLWIEMT 355

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449134|ref|XP_004142320.1| PREDICTED: uncharacterized protein LOC101219169 [Cucumis sativus]

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 159/257 (61%), Positives = 199/257 (77%), Gaps = 1/257 (0%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W+R+ FASKK+RSI LLNV+TIVYAS IP++K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWRRIFFASKKVRSIILLNVVTIVYASSIPVVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+AGIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDAGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV MLE SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLESSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPA 344
              K+ FLPLL YE+CVV++LS +W  +  W + ++   +S W W    DW+  FPWVPA
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWYFIWRWINGTETISES-WNWKTYLDWVFMFPWVPA 333

Query: 345 LYTGIFSTGICLWIEVS 361
           LYTG+ STG CLW+E++
Sbjct: 334 LYTGLLSTGFCLWLEMA 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520623|ref|XP_004167333.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101229323 [Cucumis sativus]

 Score =  336 bits (861), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/257 (61%), Positives = 195/257 (75%), Gaps = 1/257 (0%)

Query: 105 VQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMS 164
           V +  KR  W R+ FASKK+RSI LLNV+TIVYAS+IP +K  EE++ PA+F  VRF M+
Sbjct: 95  VSLFDKRSLWXRIFFASKKVRSIILLNVVTIVYASNIPFVKEVEELVDPATFNVVRFAMT 154

Query: 165 AIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPL 224
           AIPF+P V    DDV+ R+ GIELG WVSLGY ++A GL+TSDAGRASFIS+ TV+VVPL
Sbjct: 155 AIPFVPLVLDKWDDVEIRDTGIELGFWVSLGYLMQAFGLITSDAGRASFISMLTVLVVPL 214

Query: 225 FDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFGIHMLRTERISR 284
            DG+LGAI+PA TWFG L+S +GV ML  SGSPP VGD LNF+SAIFFG+HMLRTE ISR
Sbjct: 215 LDGLLGAIVPARTWFGALMSVVGVAMLASSGSPPCVGDLLNFMSAIFFGVHMLRTEHISR 274

Query: 285 STKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPA 344
              K+ FLPLL YE+CVV++LS +W  +  W + ++    S W W    DW+  FPWVPA
Sbjct: 275 RIDKDKFLPLLAYEVCVVSILSILWYFIWRWINGTETISGS-WNWKTYLDWVFMFPWVPA 333

Query: 345 LYTGIFSTGICLWIEVS 361
           LYTG+ STG CLW+E++
Sbjct: 334 LYTGLLSTGFCLWLEMA 350

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113256|gb|AFW04247.1| integral membrane protein [Triticum aestivum]

 Score =  332 bits (851), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 153/267 (57%), Positives = 198/267 (74%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +   ++ + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 63  REEGRKEEGDASKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 122

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELGLWVSL Y  +A+GL+TS+AGRASF
Sbjct: 123 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLITSEAGRASF 182

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+FFG
Sbjct: 183 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVGDVLNFLSAVFFG 242

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVA  S +W L+   F    D     WT+  LW
Sbjct: 243 IHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSILWFLLKDVFAEVHDSSFESWTFGALW 302

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEV 360
           D   +FPW+PALYTG+FSTG+C+W E+
Sbjct: 303 DSAASFPWIPALYTGVFSTGLCMWAEM 329

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326490417|dbj|BAJ84872.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 157/270 (58%), Positives = 197/270 (72%), Gaps = 3/270 (1%)

Query: 91  KEKKNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEI 150
           +E + +  +   + V+    RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +
Sbjct: 62  EEGRKEKGRDVGKRVR---GRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEAL 118

Query: 151 MHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210
             PA F  VRFV++AIPFLPFV  A  D +TRN G+ELGLWVSL Y  +A+GL TS+AGR
Sbjct: 119 TEPAVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGLWVSLAYLAQAIGLTTSEAGR 178

Query: 211 ASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI 270
           ASFI+ FTVIVVPL DG  GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+
Sbjct: 179 ASFIAAFTVIVVPLIDGFFGASIPMLTWFGAIVSIIGVGLLECGGSPPCVGDVLNFLSAV 238

Query: 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWT 330
           FFGIHMLRTE+ISRST K+ F+ LL  E+ VVA  S +W L+   F   QD     WT+ 
Sbjct: 239 FFGIHMLRTEQISRSTDKKKFMALLSLEVLVVAFTSILWFLLKDAFVEVQDSGFEAWTFG 298

Query: 331 MLWDWMVTFPWVPALYTGIFSTGICLWIEV 360
            LWD   +FPW+PALYTG+FSTG+C+W E+
Sbjct: 299 TLWDSAASFPWIPALYTGVFSTGLCMWAEM 328

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113259|gb|AFW04249.1| integral membrane protein [Triticum aestivum]

 Score =  330 bits (847), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 154/267 (57%), Positives = 197/267 (73%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           + +  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  REEGGKEKGGVSKRVHGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPF+PFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFIPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP VGD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSVIGVGLLECGGSPPCVGDVLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVAL S IW L+   F    D     WT+  LW
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEVLVVALTSIIWFLLKDAFVEVHDSSFESWTFGTLW 306

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEV 360
           D   +FPW+PALYTG+FSTG+C+W E+
Sbjct: 307 DSAASFPWIPALYTGVFSTGLCMWAEM 333

Source: Triticum aestivum

Species: Triticum aestivum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111492|ref|XP_002315877.1| predicted protein [Populus trichocarpa] gi|222864917|gb|EEF02048.1| predicted protein [Populus trichocarpa]

 Score =  328 bits (840), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 152/211 (72%), Positives = 177/211 (83%)

Query: 151 MHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR 210
           M PA+F AVRFV+SAIPFLPF   + DD + RNAGIELG WVSLGY  +ALGLLTSDAGR
Sbjct: 1   MDPATFTAVRFVVSAIPFLPFALQSWDDARIRNAGIELGFWVSLGYLTQALGLLTSDAGR 60

Query: 211 ASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI 270
           ASFIS+FTVIVVPL DGMLGAI+PAHTWFG L+S +GV MLE SGSPPS+GD LNFLSA+
Sbjct: 61  ASFISMFTVIVVPLLDGMLGAIVPAHTWFGALMSIVGVAMLESSGSPPSIGDLLNFLSAV 120

Query: 271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWT 330
           FFG+HMLRTE ISRST K+NFLP+LG+E+CV+A+ STIW  +G WF   Q  D S WTW 
Sbjct: 121 FFGVHMLRTEHISRSTDKKNFLPILGFEVCVIAISSTIWYFLGSWFGDVQTCDPSSWTWE 180

Query: 331 MLWDWMVTFPWVPALYTGIFSTGICLWIEVS 361
           M+W W+  FPW+PALYTGIFSTG+CLWIE++
Sbjct: 181 MVWHWLAVFPWIPALYTGIFSTGLCLWIEMA 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|411113263|gb|AFW04252.1| integral membrane protein [Triticum urartu]

 Score =  327 bits (837), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 151/267 (56%), Positives = 196/267 (73%)

Query: 94  KNDNAQTTSESVQIITKRPFWKRVLFASKKIRSIFLLNVITIVYASDIPILKAAEEIMHP 153
           +++  +      + +  RP W+R+LFASKK RSI +LN +T++YASDIP+LK  E +  P
Sbjct: 67  RDEGGKEKGGVSKRVRGRPMWRRILFASKKTRSIMILNALTVIYASDIPVLKEVEALTEP 126

Query: 154 ASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF 213
           A F  VRFV++AIPFLPFV  A  D +TRN G+ELG+WVSL Y  +A+GL+TS+AGRASF
Sbjct: 127 AVFNMVRFVIAAIPFLPFVIRAFGDRRTRNGGLELGVWVSLAYLAQAIGLITSEAGRASF 186

Query: 214 ISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFFG 273
           I+ FTVIVVPL DG+ GA IP  TWFG ++S +GVG+LEC GSPP +GD LNFLSA+FFG
Sbjct: 187 IAAFTVIVVPLIDGIFGASIPMLTWFGAIVSIIGVGLLECGGSPPCIGDLLNFLSAVFFG 246

Query: 274 IHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLW 333
           IHMLRTE+ISRST K+ F+ LL +E+ VVA  S +W L+   F    D      T+  LW
Sbjct: 247 IHMLRTEQISRSTDKKKFMALLSFEVLVVAFTSIVWFLLKDVFTEVHDSSFESLTFGTLW 306

Query: 334 DWMVTFPWVPALYTGIFSTGICLWIEV 360
           D   +FPW+PALYTG+FSTG+C+W E+
Sbjct: 307 DSAASFPWIPALYTGVFSTGLCMWAEM 333

Source: Triticum urartu

Species: Triticum urartu

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
UNIPROTKB|Q48AQ1	322	CPS_0094 "Membrane protein" [C	0.637	0.714	0.256	1.8e-11
TIGR_CMR|CPS_0094	322	CPS_0094 "membrane protein" [C	0.637	0.714	0.256	1.8e-11
UNIPROTKB|Q3AES3	298	CHY_0503 "Putative membrane pr	0.512	0.620	0.252	9.3e-09
TIGR_CMR|CHY_0503	298	CHY_0503 "putative membrane pr	0.512	0.620	0.252	9.3e-09
UNIPROTKB|Q746W1	292	GSU3407 "Membrane protein, put	0.520	0.643	0.258	1.5e-08
TIGR_CMR|GSU_3407	292	GSU_3407 "membrane protein, pu	0.520	0.643	0.258	1.5e-08
UNIPROTKB|Q83C01	305	CBU_1336 "Transporter, drug/me	0.598	0.708	0.228	3e-08
TIGR_CMR|CBU_1336	305	CBU_1336 "membrane protein, pu	0.598	0.708	0.228	3e-08
UNIPROTKB|Q4KHB5	301	PFL_1237 "Putative membrane pr	0.434	0.521	0.245	2.4e-07
TIGR_CMR|BA_1622	303	BA_1622 "transporter, EamA fam	0.595	0.709	0.231	2.5e-07

UNIPROTKB|Q48AQ1 CPS_0094 "Membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 179 (68.1 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 65/253 (25%), Positives = 117/253 (46%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKK 288
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R   +   
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDRFVDNLP- 182

Query:   289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-DQSPWTW-TMLWDWMVTFPWVPALY 346
                +PL   +I  V++ STI + +G   D    + D  P +W   L+  ++ F     L 
Sbjct:   183 --IIPLSIVQIFAVSIYSTIAIFIGP--DPVFYYQDAEPVSWYQQLFTPLMIFA---ILV 235

Query:   347 TGIFSTGICLWIE 359
             +GI  T    W +
Sbjct:   236 SGILGTAYAFWAQ 248

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_0094 CPS_0094 "membrane protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 179 (68.1 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 65/253 (25%), Positives = 117/253 (46%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S +I +I LL V  I     +PI   A E+M   +F A+RF ++ +  LP +++ +    
Sbjct:     5 SPRIATILLLIVCFIWGVEFVPI-DLAIEVMPTNTFNAIRFAVATLSMLPLLWFVQKKNK 63

Query:   177 ------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG 230
                   D V    +G+ LG ++ +G++ +  G+  +    A FI+   V +VP+   ++ 
Sbjct:    64 GNSKPIDYVLLIRSGMLLGFFLFIGFYTQTEGMRFTTVTNAGFITGLCVPLVPVLGFLIF 123

Query:   231 A-IIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKK 288
               ++P   W GV+ +  G+ ML        + GD L  + A  F  H++ T+R   +   
Sbjct:   124 RNVVPKSVWIGVVTATAGLYMLTIGDKLVFNKGDILVLICAFGFAGHIIMTDRFVDNLP- 182

Query:   289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDF-DQSPWTW-TMLWDWMVTFPWVPALY 346
                +PL   +I  V++ STI + +G   D    + D  P +W   L+  ++ F     L 
Sbjct:   183 --IIPLSIVQIFAVSIYSTIAIFIGP--DPVFYYQDAEPVSWYQQLFTPLMIFA---ILV 235

Query:   347 TGIFSTGICLWIE 359
             +GI  T    W +
Sbjct:   236 SGILGTAYAFWAQ 248

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q3AES3 CHY_0503 "Putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 50/198 (25%), Positives = 94/198 (47%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S +    +    L
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFSPNFSATSLT--L 180

Query:   296 GYEICVVALLS---TIWV 310
             G +I  V +LS    +W+
Sbjct:   181 G-QIATVGVLSLPAALWL 197

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0503 CHY_0503 "putative membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 155 (59.6 bits), Expect = 9.3e-09, P = 9.3e-09
 Identities = 50/198 (25%), Positives = 94/198 (47%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVK 180
             +K++ +   L V+T  + +   I+K     + P SF + RF++S    LP +   ++   
Sbjct:     5 TKQLLADISLIVVTAFWGTTFVIIKNILANIEPFSFLSFRFLLSTFFLLPLLL-QKEGFS 63

Query:   181 TRNA--GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA--IIPAH 236
              +    G   G ++ LGY ++ +GL  + A  + FI+   V++VP+   +L    + P  
Sbjct:    64 PKGVFFGSIAGFFLWLGYILQTIGLKYTSAANSGFITGLAVVMVPVLSSILNKKPVTPG- 122

Query:   237 TWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               FG  +S LG+ ++        + GD L    A+FF + ++  ER S +    +    L
Sbjct:   123 VIFGTGLSFLGLFIMSFDFKAGFNTGDLLTLAGALFFSMQIVSVERFSPNFSATSLT--L 180

Query:   296 GYEICVVALLS---TIWV 310
             G +I  V +LS    +W+
Sbjct:   181 G-QIATVGVLSLPAALWL 197

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q746W1 GSU3407 "Membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:   123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV--K 180
             K ++I  L + T  +     I+K A   +    F A RF+M+ +  +PF    R  +  +
Sbjct:     3 KAKAIVALLLTTFFWGITFTIVKDAVAQVDVFVFLAQRFLMAVVLLVPFCACRRVPLTMQ 62

Query:   181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTW 238
             T   G+ LGL++   Y  + + L  + A    F++  +V++VP+   +L   A+     W
Sbjct:    63 TVRHGLFLGLFLFGSYAFQTMALRFTTASNTGFLTGLSVVLVPMLGALLFRQAVSQGIKW 122

Query:   239 FGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY 297
              GV ++  G+ +L  +G+   ++GD L  + A+   +H++ T + +R     +   L   
Sbjct:   123 -GVALAVPGLFLLCTNGAFVLNIGDMLAAICAVCVSLHLILTGKFARDN---DVWWLTAM 178

Query:   298 EICVVALLSTIWVLVGG 314
             ++  VALLS +   VGG
Sbjct:   179 QLSTVALLSFLVAEVGG 195

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3407 GSU_3407 "membrane protein, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 153 (58.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 51/197 (25%), Positives = 96/197 (48%)

Query:   123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDV--K 180
             K ++I  L + T  +     I+K A   +    F A RF+M+ +  +PF    R  +  +
Sbjct:     3 KAKAIVALLLTTFFWGITFTIVKDAVAQVDVFVFLAQRFLMAVVLLVPFCACRRVPLTMQ 62

Query:   181 TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTW 238
             T   G+ LGL++   Y  + + L  + A    F++  +V++VP+   +L   A+     W
Sbjct:    63 TVRHGLFLGLFLFGSYAFQTMALRFTTASNTGFLTGLSVVLVPMLGALLFRQAVSQGIKW 122

Query:   239 FGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY 297
              GV ++  G+ +L  +G+   ++GD L  + A+   +H++ T + +R     +   L   
Sbjct:   123 -GVALAVPGLFLLCTNGAFVLNIGDMLAAICAVCVSLHLILTGKFARDN---DVWWLTAM 178

Query:   298 EICVVALLSTIWVLVGG 314
             ++  VALLS +   VGG
Sbjct:   179 QLSTVALLSFLVAEVGG 195

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83C01 CBU_1336 "Transporter, drug/metabolite exporter family" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 151 (58.2 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 56/245 (22%), Positives = 119/245 (48%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSP---PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               + + L +G +   +G+       GDF     A+ + ++++  +  S+  K E+ +  L
Sbjct:   121 DFVTALLCLGGIFILTGANIFNMKGGDFWTLGCAVAYALYIVTLQAFSKKLKPEDTILAL 180

Query:   296 GYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355
              Y+I    L S I+ L+  ++ ++     S ++W ++         +  L+  IF+TG+ 
Sbjct:   181 SYQI----LFSLIFPLLTAFYKTTA----SIFSWPVI---------IAVLFCAIFATGLV 223

Query:   356 LWIEV 360
              ++++
Sbjct:   224 FYLQL 228

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_1336 CBU_1336 "membrane protein, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 151 (58.2 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 56/245 (22%), Positives = 119/245 (48%)

Query:   124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRN 183
             +R+   L  IT+++    P++K A   + P+ F  +R  ++++  LP +F  R   KT  
Sbjct:     5 VRAHLALFFITLLWGLTFPLIKDALGSISPSLFVVLRTSVASLILLPVIFLQRK--KTTF 62

Query:   184 AGIE----LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWF 239
               I+    LG + S  Y  +++GL +  +  ++FI+  +V+VVP    +     P   WF
Sbjct:    63 TMIKWTLVLGFFQSATYVFQSIGLESISSADSAFITALSVVVVPFLALIFLKSKPR--WF 120

Query:   240 GVLISALGVG-MLECSGSP---PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
               + + L +G +   +G+       GDF     A+ + ++++  +  S+  K E+ +  L
Sbjct:   121 DFVTALLCLGGIFILTGANIFNMKGGDFWTLGCAVAYALYIVTLQAFSKKLKPEDTILAL 180

Query:   296 GYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355
              Y+I    L S I+ L+  ++ ++     S ++W ++         +  L+  IF+TG+ 
Sbjct:   181 SYQI----LFSLIFPLLTAFYKTTA----SIFSWPVI---------IAVLFCAIFATGLV 223

Query:   356 LWIEV 360
              ++++
Sbjct:   224 FYLQL 228

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q4KHB5 PFL_1237 "Putative membrane protein" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 143 (55.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 41/167 (24%), Positives = 82/167 (49%)

Query:   121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---- 176
             S+ +R+  L+ +  +++ S      +    + P  +  +RF + ++  LP V        
Sbjct:     3 SQALRADVLMLITAVIWGSAFVAQTSGMNHIGPFLYSGLRFALGSLCLLPLVLRKTPTDR 62

Query:   177 --DDVKTRN---AGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLGA 231
               + +  R     G+ +GL ++LG  ++ +GL+ +    A FI+   VIVVPL   ++G 
Sbjct:    63 QPEPLLNRGLLLGGVLMGLALALGINLQQVGLMFTTVTNAGFITGLYVIVVPLLGLLIGH 122

Query:   232 IIPAHTWFGVLISALGVGMLECSGS-PPSVGDFLNFLSAIFFGIHML 277
                  TW G +++ +G+ +L  S S   + GD+L  + A  +G H++
Sbjct:   123 KTGLGTWLGAVLAVVGMFLLSVSDSFHVASGDWLQLIGAFVWGGHVI 169

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_1622 BA_1622 "transporter, EamA family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 143 (55.4 bits), Expect = 2.5e-07, P = 2.5e-07
 Identities = 55/238 (23%), Positives = 117/238 (49%)

Query:   133 ITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIP--FLPFVFW---ARDDVKTRN-AGI 186
             ++ ++ +   +++ A   + P +F  +RF+ + I   F+  +F    ++  +K  + AG+
Sbjct:    16 VSFIWGATFVVVQNAMSFVGPFTFNGIRFLFAGIILLFVQILFSKKASKQHIKQSSLAGL 75

Query:   187 ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISA 245
              +G ++ +GY ++  GLL + + +A F++  ++++VP+   + L          G+ ++ 
Sbjct:    76 IVGFFLCIGYVLQTFGLLYTTSSKAGFLTGLSIVMVPILSFIFLKQKATIFIVIGIAVAT 135

Query:   246 LGVGMLECSGS-PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVAL 304
              G+ +L    S   ++GD L    A+ F  H+L     S   KK + L L   ++  V L
Sbjct:   136 AGLYLLTAGDSFQLNIGDILVLGCAVAFAAHILVNGFFS---KKISPLLLSTSQVLAVGL 192

Query:   305 LSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALY-TGIFSTGICLWIEVS 361
              S+I   +  + D  + F  + WT +       +F +  AL+ T +F+T I  +I+ S
Sbjct:   193 FSSICAFL--FEDWEKLFSVALWTNS-------SFLF--ALFLTSLFATSIAFFIQTS 239


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.441    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      361       340   0.00095  116 3  11 22  0.45    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  620 (66 KB)
  Total size of DFA:  245 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  25.36u 0.12s 25.48t   Elapsed:  00:00:01
  Total cpu time:  25.36u 0.12s 25.48t   Elapsed:  00:00:01
  Start:  Fri May 10 15:35:54 2013   End:  Fri May 10 15:35:55 2013

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
COG0697	292	COG0697, RhaT, Permeases of the drug/metabolite tr	0.002

>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

 Score = 39.5 bits (92), Expect = 0.002
 Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 32/243 (13%)

Query: 127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGI 186
           + LL    +   S I +  A E +       A+RF+++A+  LP +      ++      
Sbjct: 10  LALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPW 69

Query: 187 ELGLWVSLGYFVE-----ALGLLTSDAGRASFISLFTVIVVPLFDGML--GAIIPAHTWF 239
            L L ++L           L L  + A  AS I     +   L   +L  G  +      
Sbjct: 70  LLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQIL 129

Query: 240 GVLISALGVGMLECSG----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLL 295
           G+L++  GV ++   G        +G  L   +A+ + ++    +R+SR          L
Sbjct: 130 GILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVKRLSRLG-----PVTL 184

Query: 296 GYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC 355
              + ++  L  + +     F        +P              W+  LY G+FSTG+ 
Sbjct: 185 ALLLQLLLALLLLLLFFLSGFG-------APILSRA---------WLLLLYLGVFSTGLA 228

Query: 356 LWI 358
             +
Sbjct: 229 YLL 231

Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PRK11272	292	putative DMT superfamily transporter inner membran	99.92
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.92
PRK11689	295	aromatic amino acid exporter; Provisional	99.91
PLN00411	358	nodulin MtN21 family protein; Provisional	99.89
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.89
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.88
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.88
PRK15430	296	putative chloramphenical resistance permease RarD;	99.87
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.76
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.76
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.71
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.71
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.59
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.47
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.44
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.38
COG2962	293	RarD Predicted permeases [General function predict	99.35
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.3
COG2510	140	Predicted membrane protein [Function unknown]	99.25
KOG2765	416	consensus Predicted membrane protein [Function unk	99.05
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.03
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	98.99
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.68
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.67
PRK10532	293	threonine and homoserine efflux system; Provisiona	98.63
PRK11689	295	aromatic amino acid exporter; Provisional	98.56
PRK11272	292	putative DMT superfamily transporter inner membran	98.5
PLN00411	358	nodulin MtN21 family protein; Provisional	98.46
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.38
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.29
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.23
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.21
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.11
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.1
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.09
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.03
PRK15430	296	putative chloramphenical resistance permease RarD;	98.02
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.98
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.96
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.87
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.87
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.82
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	97.77
KOG2766	336	consensus Predicted membrane protein [Function unk	97.72
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.54
PRK13499	345	rhamnose-proton symporter; Provisional	97.53
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	97.43
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.18
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	97.03
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.02
PRK11431	105	multidrug efflux system protein; Provisional	96.82
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.81
COG2076	106	EmrE Membrane transporters of cations and cationic	96.78
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	96.75
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.72
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	96.7
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.67
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	96.25
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	95.7
KOG1580	337	consensus UDP-galactose transporter related protei	95.63
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	95.54
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	95.52
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.33
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.32
PRK13499	345	rhamnose-proton symporter; Provisional	94.78
COG2962	293	RarD Predicted permeases [General function predict	94.48
KOG1581	327	consensus UDP-galactose transporter related protei	94.23
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	94.05
KOG4510	346	consensus Permease of the drug/metabolite transpor	92.26
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	91.39
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	91.31
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	90.36
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	90.14
KOG1581	327	consensus UDP-galactose transporter related protei	89.38
COG2510	140	Predicted membrane protein [Function unknown]	88.97
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	88.8
KOG4831	125	consensus Unnamed protein [Function unknown]	88.57
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	88.06
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	86.19
KOG1580	337	consensus UDP-galactose transporter related protei	80.88

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.92  E-value=6.5e-23  Score=196.60  Aligned_cols=216  Identities=16%  Similarity=0.226  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---ChhhHHHHHHHHHHHH-HHHHHHHH
Q 018063          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---DVKTRNAGIELGLWVS-LGYFVEAL  201 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~---~~~~~~~~~l~G~~~~-~~~~~~~~  201 (361)
                      -.+.+++..++||++++++|...+++||..++++|+.+++++++++...+|+   ++++++.....|.+.. ..+.++++
T Consensus         9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   88 (292)
T PRK11272          9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV   88 (292)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556788889999999999999999999999999999999998887655432   3456666677777653 45667778


Q ss_pred             HH-hhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhhhccCC-C-CCcHHHHHHHHHHHHHHHHHHH
Q 018063          202 GL-LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSG-S-PPSVGDFLNFLSAIFFGIHMLR  278 (361)
Q Consensus       202 al-~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv~ll~~~~-~-~~~~G~ll~L~aal~~A~~~v~  278 (361)
                      +. +++++++++++.++.|++++++++++|||+++++++|++++++|+.++..++ . ....|++++++++++||.|.+.
T Consensus        89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~  168 (292)
T PRK11272         89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW  168 (292)
T ss_pred             HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            88 9999999999999999999999987899999999999999999999886543 2 2347999999999999999999


Q ss_pred             HHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063          279 TERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI  358 (361)
Q Consensus       279 ~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~l  358 (361)
                      .||..++    ++...+.+++.+++++..+.....+...          .     ...+...|..++|+|+++|+++|.+
T Consensus       169 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~i~~l~i~~s~~~~~l  229 (292)
T PRK11272        169 SSRLPLP----VGMMAGAAEMLAAGVVLLIASLLSGERL----------T-----ALPTLSGFLALGYLAVFGSIIAISA  229 (292)
T ss_pred             HHhcCCC----cchHHHHHHHHHHHHHHHHHHHHcCCcc----------c-----ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9997654    2455678888888887777665433210          0     0013568999999999999999988


Q ss_pred             hc
Q 018063          359 EV  360 (361)
Q Consensus       359 q~  360 (361)
                      ++
T Consensus       230 ~~  231 (292)
T PRK11272        230 YM  231 (292)
T ss_pred             HH
Confidence            74

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.92  E-value=1.5e-22  Score=194.74  Aligned_cols=221  Identities=15%  Similarity=0.150  Sum_probs=163.0

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHH-HHHHHHHHHHhh
Q 018063          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVS-LGYFVEALGLLT  205 (361)
Q Consensus       127 ~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~~-~~~~~~~~al~~  205 (361)
                      .++.++++++||++++++|...+++||..+.++|+.+++++++++..++|.+   ++.....|+... ..+.+++.++++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~   82 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVP---LNLLLGYGLTISFGQFAFLFCAINF   82 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888999999999999999999999999999999887776655433322   223333454433 334566788888


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC---CC-cHHHHHHHHHHHHHHHHHHHH
Q 018063          206 -SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PP-SVGDFLNFLSAIFFGIHMLRT  279 (361)
Q Consensus       206 -tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~---~~-~~G~ll~L~aal~~A~~~v~~  279 (361)
                       .++++++++.+++|+++++++++ +|||+++++++|++++++|+.++..++.   +. ..|++++++++++||+|.++.
T Consensus        83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~  162 (299)
T PRK11453         83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN  162 (299)
T ss_pred             cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence             58899999999999999999965 7999999999999999999998876531   22 369999999999999999999


Q ss_pred             HHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhh
Q 018063          280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE  359 (361)
Q Consensus       280 rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq  359 (361)
                      ||..++.+..+......++++.+.+.........+....          ....+...+...|..++|+|+++|+++|.++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~  232 (299)
T PRK11453        163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSAT----------MIHSLVTIDMTTILSLMYLAFVATIVGYGIW  232 (299)
T ss_pred             HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchh----------hhhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            998765432234455566666655544444333332110          0000111356789999999999999999987


Q ss_pred             c
Q 018063          360 V  360 (361)
Q Consensus       360 ~  360 (361)
                      +
T Consensus       233 ~  233 (299)
T PRK11453        233 G  233 (299)
T ss_pred             H
Confidence            4

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.91  E-value=2.1e-22  Score=193.44  Aligned_cols=213  Identities=15%  Similarity=0.089  Sum_probs=155.0

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH-HHHHHHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEALG  202 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~-~~~~~~~~~a  202 (361)
                      .++++++++++++||++++.+|.+.+++||+.+.++|+.+++++++++..+++.++++++ ..+.|.+. ...+.+++.+
T Consensus         3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~a   81 (295)
T PRK11689          3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKR-YLLAGGLLFVSYEICLALS   81 (295)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHH-HHHHHhHHHHHHHHHHHHH
Confidence            567888999999999999999999999999999999999999988876422222222222 33333333 3334455566


Q ss_pred             Hhh----chHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC------------CCcHHHHHH
Q 018063          203 LLT----SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS------------PPSVGDFLN  265 (361)
Q Consensus       203 l~~----tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~------------~~~~G~ll~  265 (361)
                      +++    +++++++++.+++|+++++++++ +|||+++++++|++++++|++++..++.            +...|++++
T Consensus        82 ~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~  161 (295)
T PRK11689         82 LGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLA  161 (295)
T ss_pred             HHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHH
Confidence            654    57888999999999999999975 7999999999999999999998876532            123599999


Q ss_pred             HHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHH
Q 018063          266 FLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPAL  345 (361)
Q Consensus       266 L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~ll  345 (361)
                      ++++++||+|.++.||..+++   ++....  + ..+++...+.....+...         .       ..+...|..++
T Consensus       162 l~aa~~~A~~~v~~k~~~~~~---~~~~~~--~-~~~~~~l~~~~~~~~~~~---------~-------~~~~~~~~~l~  219 (295)
T PRK11689        162 FIGAFIWAAYCNVTRKYARGK---NGITLF--F-ILTALALWIKYFLSPQPA---------M-------VFSLPAIIKLL  219 (295)
T ss_pred             HHHHHHHHHHHHHHhhccCCC---CchhHH--H-HHHHHHHHHHHHHhcCcc---------c-------cCCHHHHHHHH
Confidence            999999999999999998765   444332  2 233343333333322100         0       02356788888


Q ss_pred             HHHHHHHHHHHHhhc
Q 018063          346 YTGIFSTGICLWIEV  360 (361)
Q Consensus       346 ylgv~~T~lay~lq~  360 (361)
                      |.| ++++++|.+++
T Consensus       220 ~~~-~~t~~~~~l~~  233 (295)
T PRK11689        220 LAA-AAMGFGYAAWN  233 (295)
T ss_pred             HHH-HHHHHHHHHHH
Confidence            888 57899998875

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.89  E-value=2.8e-21  Score=190.39  Aligned_cols=224  Identities=15%  Similarity=0.161  Sum_probs=173.8

Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhc-c-C--C---hhhHHHHHHHHHHHH
Q 018063          122 KKIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWA-R-D--D---VKTRNAGIELGLWVS  193 (361)
Q Consensus       122 ~~~~g~l~llla~llWG~~~~~~K~~~~-~~~P~~l~~~R~lia~liLl~~~~~~-~-~--~---~~~~~~~~l~G~~~~  193 (361)
                      |+.+.++.|++.-+..+...++.|.+++ +++|+.+.++|+.+|+++++++.+.+ | +  +   ++++....+.|++.+
T Consensus        10 ~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~   89 (358)
T PLN00411         10 REAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGS   89 (358)
T ss_pred             hccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence            3578999999999999999999999887 79999999999999999998886542 1 1  2   344556667777664


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh-------cCcccHHHHHHHHHHHHHhhhhccC-CC---------
Q 018063          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-------GAIIPAHTWFGVLISALGVGMLECS-GS---------  256 (361)
Q Consensus       194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll-------~er~~~~~~igl~la~~Gv~ll~~~-~~---------  256 (361)
                      ..+.+++.|++|+++++++++.+++|+++.++++++       +||+++++++|++++++|+.++... +.         
T Consensus        90 ~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~  169 (358)
T PLN00411         90 MYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPP  169 (358)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence            455678899999999999999999999999999754       8999999999999999999987642 10         


Q ss_pred             ----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 018063          257 ----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQ  320 (361)
Q Consensus       257 ----------------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~  320 (361)
                                      +...|+++.++++++||+|+++.||..++++  +....++|++.++++...++.+..+..+ ..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~l~~~~~~-~~  246 (358)
T PLN00411        170 YLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP--AAFTVSFLYTVCVSIVTSMIGLVVEKNN-PS  246 (358)
T ss_pred             cccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHhHHHHHHHHHHHHHHHHHHHHHccCC-cc
Confidence                            0134999999999999999999999988874  4557788888888887776666544211 00


Q ss_pred             CCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhhc
Q 018063          321 DFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEV  360 (361)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq~  360 (361)
                           .  |.   .+.+. ..+.++|+|++ +.++|.+++
T Consensus       247 -----~--~~---~~~~~-~~~~i~y~~i~-t~lay~lw~  274 (358)
T PLN00411        247 -----V--WI---IHFDI-TLITIVTMAII-TSVYYVIHS  274 (358)
T ss_pred             -----c--ce---eccch-HHHHHHHHHHH-HHHHHHHHH
Confidence                 1  00   00122 24568898876 578998874

>TIGR00688 rarD rarD protein

Probab=99.89  E-value=9.7e-21  Score=177.84  Aligned_cols=157  Identities=14%  Similarity=0.119  Sum_probs=128.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC-----------Chhh-HHHHHHHHHHH
Q 018063          125 RSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-----------DVKT-RNAGIELGLWV  192 (361)
Q Consensus       125 ~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~-----------~~~~-~~~~~l~G~~~  192 (361)
                      +|++++++++++||++++++|. .+++||.+++++|+++++++++++...+++           ++++ +....+.|++.
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   80 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI   80 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            4788999999999999999998 467999999999999999887765532211           1112 22345567666


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHHH
Q 018063          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIF  271 (361)
Q Consensus       193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~~G~ll~L~aal~  271 (361)
                      ...+.++++|++++++++++++.+++|++++++++ ++|||+++++|+|++++++|+.++..++.+.   .+++++++++
T Consensus        81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~---~~~~l~aa~~  157 (256)
T TIGR00688        81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL---PWEALVLAFS  157 (256)
T ss_pred             HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHH
Confidence            67788999999999999999999999999999996 5899999999999999999999886543222   1467899999


Q ss_pred             HHHHHHHHHHhhhc
Q 018063          272 FGIHMLRTERISRS  285 (361)
Q Consensus       272 ~A~~~v~~rk~~~~  285 (361)
                      ||+|.+..||..++
T Consensus       158 ~a~~~i~~~~~~~~  171 (256)
T TIGR00688       158 FTAYGLIRKALKNT  171 (256)
T ss_pred             HHHHHHHHhhcCCC
Confidence            99999999987653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.88  E-value=1.3e-20  Score=180.86  Aligned_cols=212  Identities=16%  Similarity=0.109  Sum_probs=166.0

Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc--CChhhHHHHHHHHHHHHHHHHHHH
Q 018063          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR--DDVKTRNAGIELGLWVSLGYFVEA  200 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~--~~~~~~~~~~l~G~~~~~~~~~~~  200 (361)
                      +.+++.+++++++.|++++.++|.+.+++||..+.++|+++++++++++..+++  .++++++..+..|......+.+++
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~   89 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFY   89 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            478899999999999999999999999999999999999999998887764432  345677777777877666677888


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhhhccCCC---C-CcHHHHHHHHHHHHHHHHH
Q 018063          201 LGLLTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIHM  276 (361)
Q Consensus       201 ~al~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv~ll~~~~~---~-~~~G~ll~L~aal~~A~~~  276 (361)
                      +++++++++.++++.++.|+++.+++   +||..  ++.++.++++|+.++..++.   + ...|++++++++++||+|.
T Consensus        90 ~al~~~~~~~a~~l~~t~Pi~~~ll~---~~~~~--~~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~~  164 (293)
T PRK10532         90 LSIQTVPLGIAVALEFTGPLAVALFS---SRRPV--DFVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIYI  164 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHh---cCChH--HHHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998765   35443  45567889999998774421   2 2469999999999999999


Q ss_pred             HHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH
Q 018063          277 LRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICL  356 (361)
Q Consensus       277 v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay  356 (361)
                      +..||..+++   ++... .++.++++++..++....+. ..       .         .+...|..++|+|+++|+++|
T Consensus       165 v~~r~~~~~~---~~~~~-~~~~~~~~~~l~~~~~~~~~-~~-------~---------~~~~~~~~~l~lgv~~t~~~~  223 (293)
T PRK10532        165 LSGQRAGAEH---GPATV-AIGSLIAALIFVPIGALQAG-EA-------L---------WHWSILPLGLAVAILSTALPY  223 (293)
T ss_pred             HHHHHHhccC---CchHH-HHHHHHHHHHHHHHHHHccC-cc-------c---------CCHHHHHHHHHHHHHHHHHHH
Confidence            9999998765   45554 46666777776666554321 00       0         124467778899999999999


Q ss_pred             Hhhc
Q 018063          357 WIEV  360 (361)
Q Consensus       357 ~lq~  360 (361)
                      .+++
T Consensus       224 ~l~~  227 (293)
T PRK10532        224 SLEM  227 (293)
T ss_pred             HHHH
Confidence            9875

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.88  E-value=2.4e-20  Score=174.60  Aligned_cols=205  Identities=16%  Similarity=0.218  Sum_probs=164.6

Q ss_pred             HHhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhchHHHHHHH
Q 018063          137 YASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAGRASFI  214 (361)
Q Consensus       137 WG~~~~~~K~~~~-~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~al~~tsa~~aaii  214 (361)
                      ||.+++.+|..++ ..|+..+.+.|++.+.+++.++..++ +++++++.....|.+ ....+.+++.|++++++++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii   79 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL   79 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence            8999999999887 68999999999999988887765554 445566666666655 45667888999999999999999


Q ss_pred             HHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC--CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Q 018063          215 SLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENF  291 (361)
Q Consensus       215 ~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~--~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~  291 (361)
                      .++.|+++.+++.+ +|||+++++++|++++++|+.++..++.  ....|++++++++++|+.+.+..|+..++.+ .++
T Consensus        80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~  158 (260)
T TIGR00950        80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG-PEL  158 (260)
T ss_pred             HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC-chH
Confidence            99999999999965 7999999999999999999998876542  3458999999999999999999999887653 124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhhc
Q 018063          292 LPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIEV  360 (361)
Q Consensus       292 l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq~  360 (361)
                      .....+++.+++++.++.....+...        .         .+...|..++++++++++++|.+++
T Consensus       159 ~~~~~~~~~~~~~~l~~~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~~~~~  210 (260)
T TIGR00950       159 LQFTGWVLLLGALLLLPFAWFLGPNP--------Q---------ALSLQWGALLYLGLIGTALAYFLWN  210 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCC--------C---------cchHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778888888777765543210        0         1345788899999999999998864

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.87  E-value=6.8e-20  Score=176.07  Aligned_cols=179  Identities=12%  Similarity=0.097  Sum_probs=135.9

Q ss_pred             ccchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---------ChhhHHHHHHHHHH
Q 018063          121 SKKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---------DVKTRNAGIELGLW  191 (361)
Q Consensus       121 ~~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~---------~~~~~~~~~l~G~~  191 (361)
                      +++.+|++++++++++||.+++++|.. +++||.++.++|++++.++++++...+++         +++++......+..
T Consensus         4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (296)
T PRK15430          4 KQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL   82 (296)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence            456789999999999999999999985 67999999999999999877766543221         11222222222334


Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHH
Q 018063          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAI  270 (361)
Q Consensus       192 ~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~~G~ll~L~aal  270 (361)
                      ....+.++++|++++++++++++.++.|+++.++++ ++|||+++++|+|++++++|++++..++++.   .++++++++
T Consensus        83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa~  159 (296)
T PRK15430         83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLAF  159 (296)
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHHH
Confidence            456678899999999999999999999999999996 4799999999999999999999987543322   257888999


Q ss_pred             HHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHH
Q 018063          271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVAL  304 (361)
Q Consensus       271 ~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al  304 (361)
                      +||+|.+..||..++.. .+....+.+++.++..
T Consensus       160 ~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~  192 (296)
T PRK15430        160 SFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAI  192 (296)
T ss_pred             HHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHH
Confidence            99999999888754321 1233344455544433

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.76  E-value=4.7e-16  Score=153.10  Aligned_cols=229  Identities=10%  Similarity=0.048  Sum_probs=161.0

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHh--cc-CC----hhhHHHHHHHHHHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFW--AR-DD----VKTRNAGIELGLWVSLG  195 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~-P~~l~~~R~lia~liLl~~~~~--~~-~~----~~~~~~~~l~G~~~~~~  195 (361)
                      .+..++.+.-..+=.......|.+++.+| |+.++.+|++++.++...+...  ++ ++    +++++..+.+|++....
T Consensus        48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~  127 (350)
T PTZ00343         48 WKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFV  127 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            34333333333333344567899999999 9999999999998765444321  11 11    23456677788877655


Q ss_pred             HHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCC-cHHHHHHHHHHHHHH
Q 018063          196 YFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFG  273 (361)
Q Consensus       196 ~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~-~~G~ll~L~aal~~A  273 (361)
                      +...+.|+++++++.+.++.++.|+++.++++ ++|||.+++++++++++++|+.+....+.++ ..|++++++|+++||
T Consensus       128 ~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a  207 (350)
T PTZ00343        128 HFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSS  207 (350)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHH
Confidence            66667999999999999999999999999996 5899999999999999999999987655444 469999999999999


Q ss_pred             HHHHHHHHhhhccC----CCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHH
Q 018063          274 IHMLRTERISRSTK----KENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (361)
Q Consensus       274 ~~~v~~rk~~~~~~----~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv  349 (361)
                      +|.++.||..++.+    +.++..+..++.++++++++|+.+..|....       ...+.......+...+..+++ .+
T Consensus       208 ~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~-------~~~~~~~~~~~~~~~~~~~l~-~i  279 (350)
T PTZ00343        208 LRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKW-------VPVWTNYTANMTNYTKGIIIF-KI  279 (350)
T ss_pred             HHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHhhhcccccchHHHHH-HH
Confidence            99999999887642    2345556666788899998888775542110       000000000011112344556 46


Q ss_pred             HHHHHHHHhhc
Q 018063          350 FSTGICLWIEV  360 (361)
Q Consensus       350 ~~T~lay~lq~  360 (361)
                      +.++++|.+++
T Consensus       280 ~~s~l~~~l~n  290 (350)
T PTZ00343        280 FFSGVWYYLYN  290 (350)
T ss_pred             HHHHHHHHHHH
Confidence            66789988875

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.76  E-value=2.1e-16  Score=152.05  Aligned_cols=172  Identities=12%  Similarity=0.073  Sum_probs=142.7

Q ss_pred             HHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHH---hcc--CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 018063          142 PILKAAEEI-MHPASFCAVRFVMSAIPFLPFVF---WAR--DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFIS  215 (361)
Q Consensus       142 ~~~K~~~~~-~~P~~l~~~R~lia~liLl~~~~---~~~--~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~  215 (361)
                      +.-|.++++ -+|..++++|+.++.+++.+...   +++  .++++++..+..|++....+.+.+.+++|+++++++++.
T Consensus        19 ~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~   98 (302)
T TIGR00817        19 IYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIK   98 (302)
T ss_pred             HHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            466988887 77999999999998877665421   111  245678888888988777788899999999999999999


Q ss_pred             HHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHH
Q 018063          216 LFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLP  293 (361)
Q Consensus       216 ~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~~~-~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~  293 (361)
                      ++.|+++++++++ +|||+++++++|++++++|+.+....+.+. ..|++++++++++||+|.+..||..++. +.|+..
T Consensus        99 ~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~-~~~~~~  177 (302)
T TIGR00817        99 AMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTIK-SLDKTN  177 (302)
T ss_pred             hcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCccc
Confidence            9999999999964 799999999999999999998765444333 4699999999999999999999988721 137889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 018063          294 LLGYEICVVALLSTIWVLVGG  314 (361)
Q Consensus       294 l~~~~~l~~al~~l~~~l~~~  314 (361)
                      ++.+++..+++.++|+....+
T Consensus       178 ~~~~~~~~~~~~l~p~~~~~~  198 (302)
T TIGR00817       178 LYAYISIMSLFLLSPPAFITE  198 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            999999999998888877655

specificities overlap.

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.71  E-value=3.9e-15  Score=141.93  Aligned_cols=216  Identities=14%  Similarity=0.082  Sum_probs=148.8

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc--cC----Chhh-HHHHHHHHHHHHHHHHHH
Q 018063          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--RD----DVKT-RNAGIELGLWVSLGYFVE  199 (361)
Q Consensus       127 ~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~--~~----~~~~-~~~~~l~G~~~~~~~~~~  199 (361)
                      .++.++++++|+...+..|...+.-++.  .++++..+.++++++...+  +.    .+++ +......|......+.++
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL   80 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            4667889999999999999655554443  4777777777777765542  11    1223 333344454555667788


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC--CCcHHHHHHHHHHHHHHHHH
Q 018063          200 ALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS--PPSVGDFLNFLSAIFFGIHM  276 (361)
Q Consensus       200 ~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~--~~~~G~ll~L~aal~~A~~~  276 (361)
                      +.|++++++++++.+.++.|+++.+++++ +|||+++++|+|++++++|++++..++.  ....|++++++++++|++|.
T Consensus        81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~  160 (281)
T TIGR03340        81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS  160 (281)
T ss_pred             HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999975 8999999999999999999998876532  22468889999999999999


Q ss_pred             HHHHHhhhccCC-CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 018063          277 LRTERISRSTKK-ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC  355 (361)
Q Consensus       277 v~~rk~~~~~~~-~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~la  355 (361)
                      +..|+..++.++ .+......++++..++...+.....+..         ..  .     .+...++.+++++.++++++
T Consensus       161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~-----~~~~~~~~~~~~~~~~s~l~  224 (281)
T TIGR03340       161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR---------SM--F-----PYARQILPSATLGGLMIGGA  224 (281)
T ss_pred             hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc---------ch--h-----hhHHHHHHHHHHHHHHHHHH
Confidence            998886544321 1122233334333322222222111210         00  0     01235678899999999999


Q ss_pred             HHhhc
Q 018063          356 LWIEV  360 (361)
Q Consensus       356 y~lq~  360 (361)
                      |.+++
T Consensus       225 ~~l~~  229 (281)
T TIGR03340       225 YALVL  229 (281)
T ss_pred             HHHHH
Confidence            98764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.71  E-value=1.2e-14  Score=136.65  Aligned_cols=216  Identities=21%  Similarity=0.290  Sum_probs=159.0

Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHHHhcc--CC--hhhHHHHHHHHH-HHHHHH
Q 018063          123 KIRSIFLLNVITIVYASDIPILKAAEEI-MHPASFCAVRFVMSAIPFLPFVFWAR--DD--VKTRNAGIELGL-WVSLGY  196 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~~~~K~~~~~-~~P~~l~~~R~lia~liLl~~~~~~~--~~--~~~~~~~~l~G~-~~~~~~  196 (361)
                      ...+....++..+.|+.+....|...++ .++....+.|++++.+++.+...+++  ..  .+.++...+.+. .....+
T Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (292)
T COG0697           5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence            4567778888889999999999998886 77888888899999888554443332  11  112223333443 345567


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-Hh-cCcccHHHHHHHHHHHHHhhhhccCCCC----CcHHHHHHHHHHH
Q 018063          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-ML-GAIIPAHTWFGVLISALGVGMLECSGSP----PSVGDFLNFLSAI  270 (361)
Q Consensus       197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll-~er~~~~~~igl~la~~Gv~ll~~~~~~----~~~G~ll~L~aal  270 (361)
                      .+++.++++++++.++.+.++.|+++.+++. ++ +||++++++.++.++++|+.++..++..    ...|+++++++++
T Consensus        85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~  164 (292)
T COG0697          85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL  164 (292)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence            7888999999999999999999999999995 54 9999999999999999999999987653    2479999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCChHHHHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHH
Q 018063          271 FFGIHMLRTERISRSTKKENFLPLLG-YEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (361)
Q Consensus       271 ~~A~~~v~~rk~~~~~~~~~~l~l~~-~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv  349 (361)
                      +||++.+..|+.. +.   ++..... +++........+..  .....         .       ..+...|..++++|+
T Consensus       165 ~~a~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~---------~-------~~~~~~~~~~~~~g~  222 (292)
T COG0697         165 LWALYTALVKRLS-RL---GPVTLALLLQLLLALLLLLLFF--LSGFG---------A-------PILSRAWLLLLYLGV  222 (292)
T ss_pred             HHHHHHHHHHHhc-CC---ChHHHHHHHHHHHHHHHHHHHH--hcccc---------c-------cCCHHHHHHHHHHHH
Confidence            9999999999987 43   4555555 55542222222221  11100         0       013457999999999


Q ss_pred             HHHHHHHHhhc
Q 018063          350 FSTGICLWIEV  360 (361)
Q Consensus       350 ~~T~lay~lq~  360 (361)
                      ++++++|.++.
T Consensus       223 ~~~~i~~~~~~  233 (292)
T COG0697         223 FSTGLAYLLWY  233 (292)
T ss_pred             HHHHHHHHHHH
Confidence            99998888753

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.59  E-value=2.4e-13  Score=124.87  Aligned_cols=210  Identities=18%  Similarity=0.129  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc--cCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 018063          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA--RDDVKTRNAGIELGLWVSLGYFVEALGL  203 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~--~~~~~~~~~~~l~G~~~~~~~~~~~~al  203 (361)
                      .++.++.+++.--....+.|.....++|.-.+.+|..+++++++++.+..  |..+++++..+..|+.+...+.+||.++
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si   92 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI   92 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888999999999999999999999999998887543  4467788888899999888899999999


Q ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhhhccCCC---C-CcHHHHHHHHHHHHHHHHHHHH
Q 018063          204 LTSDAGRASFISLFTVIVVPLFDGMLGAIIPAHTWFGVLISALGVGMLECSGS---P-PSVGDFLNFLSAIFFGIHMLRT  279 (361)
Q Consensus       204 ~~tsa~~aaii~~~~Pv~v~lla~ll~er~~~~~~igl~la~~Gv~ll~~~~~---~-~~~G~ll~L~aal~~A~~~v~~  279 (361)
                      +..+-+.+.-|.++-|+.+.++   ..+|  .+..+-+.+++.|+.++.-.+.   + ...|..++++++.+|++|++..
T Consensus        93 ~riPlGiAVAiEF~GPL~vA~~---~sRr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G  167 (292)
T COG5006          93 ERIPLGIAVAIEFTGPLAVALL---SSRR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG  167 (292)
T ss_pred             HhccchhhhhhhhccHHHHHHH---hccc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence            9999999999999999877653   2333  3455566777888877764432   2 3689999999999999999999


Q ss_pred             HHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHhh
Q 018063          280 ERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWIE  359 (361)
Q Consensus       280 rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~lq  359 (361)
                      +|..+..   +...-+...|.+++++.+|+........              .   .++.....-+.+|+++|++.|.++
T Consensus       168 ~r~g~~~---~g~~g~a~gm~vAaviv~Pig~~~ag~~--------------l---~~p~ll~laLgvavlSSalPYsLE  227 (292)
T COG5006         168 QRAGRAE---HGTAGVAVGMLVAALIVLPIGAAQAGPA--------------L---FSPSLLPLALGVAVLSSALPYSLE  227 (292)
T ss_pred             chhcccC---CCchHHHHHHHHHHHHHhhhhhhhcchh--------------h---cChHHHHHHHHHHHHhcccchHHH
Confidence            9998654   4556677888999999998876433211              1   245667777889999999999997


Q ss_pred             c
Q 018063          360 V  360 (361)
Q Consensus       360 ~  360 (361)
                      .
T Consensus       228 m  228 (292)
T COG5006         228 M  228 (292)
T ss_pred             H
Confidence            5

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.47  E-value=1e-11  Score=119.33  Aligned_cols=167  Identities=14%  Similarity=0.075  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC---C-hhhHHHHHHHHHHHHHHHHHHHH
Q 018063          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD---D-VKTRNAGIELGLWVSLGYFVEAL  201 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~---~-~~~~~~~~l~G~~~~~~~~~~~~  201 (361)
                      ++++.++++++||++++..|... +.++.++.  |..++.+++..+....+.   + ++.+....+.|+....++.+++.
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~   78 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK   78 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence            46788899999999999999866 78887776  788888877655433221   1 23344556667766777889999


Q ss_pred             HHhhchHHHHHHHHH-HHHHHHHHHHH-HhcCcccHHH----HHHHHHHHHHhhhhccCCC---------CCcHHHHHHH
Q 018063          202 GLLTSDAGRASFISL-FTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLECSGS---------PPSVGDFLNF  266 (361)
Q Consensus       202 al~~tsa~~aaii~~-~~Pv~v~lla~-ll~er~~~~~----~igl~la~~Gv~ll~~~~~---------~~~~G~ll~L  266 (361)
                      ++++++.+.+-.+.+ ++++++.+++. ++|||.++++    ++|+++.++|+.++...+.         +...|.++++
T Consensus        79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l  158 (290)
T TIGR00776        79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL  158 (290)
T ss_pred             HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence            999999999987777 88888888886 5899999989    9999999999988765321         1258999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 018063          267 LSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC  300 (361)
Q Consensus       267 ~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l  300 (361)
                      +++++|+.|.+..|+..  +   ++...++.|..
T Consensus       159 ~sg~~y~~~~~~~~~~~--~---~~~~~~~~~~~  187 (290)
T TIGR00776       159 MSTIGYLVYVVVAKAFG--V---DGLSVLLPQAI  187 (290)
T ss_pred             HHHHHHHHHHHHHHHcC--C---CcceehhHHHH
Confidence            99999999999998763  4   56666444443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.44  E-value=5.3e-11  Score=116.06  Aligned_cols=186  Identities=16%  Similarity=0.177  Sum_probs=133.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhc---cCCHHHHHHHHHHHHHHHHHHHHHhcc-C------ChhhHHHHHHHHHHHHH
Q 018063          125 RSIFLLNVITIVYASDIPILKAAEE---IMHPASFCAVRFVMSAIPFLPFVFWAR-D------DVKTRNAGIELGLWVSL  194 (361)
Q Consensus       125 ~g~l~llla~llWG~~~~~~K~~~~---~~~P~~l~~~R~lia~liLl~~~~~~~-~------~~~~~~~~~l~G~~~~~  194 (361)
                      +..++-=+.+++-..+........+   +.|.++..+...++.. +..+....|+ .      .+++|+..++++++-..
T Consensus        13 ~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~-vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~   91 (334)
T PF06027_consen   13 IVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLAL-VYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVE   91 (334)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHH-HHhhhhhhccccccchhhcchhHHHHHHHHHHHHH
Confidence            3333333334444445555554433   3555555544444433 3334333332 1      12456666778888888


Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCC----------CCCcHHHH
Q 018063          195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG----------SPPSVGDF  263 (361)
Q Consensus       195 ~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~----------~~~~~G~l  263 (361)
                      ++++...|++||+.+.+.++..+..++++++++ ++|+|.++.+++|++++++|+.+++..|          .+...||+
T Consensus        92 aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDl  171 (334)
T PF06027_consen   92 ANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDL  171 (334)
T ss_pred             HHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHH
Confidence            888999999999999999999999999999997 5899999999999999999999876542          12368999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 018063          264 LNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGG  314 (361)
Q Consensus       264 l~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~  314 (361)
                      +++++++.||+++++.++..++.   +......+.-+++.+++.+.....+
T Consensus       172 l~l~~a~lya~~nV~~E~~v~~~---~~~~~lg~~Glfg~ii~~iq~~ile  219 (334)
T PF06027_consen  172 LALLGAILYAVSNVLEEKLVKKA---PRVEFLGMLGLFGFIISGIQLAILE  219 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHHHHHHHhee
Confidence            99999999999999999988876   5666666666677777777666555

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.38  E-value=1.1e-13  Score=128.03  Aligned_cols=212  Identities=16%  Similarity=0.102  Sum_probs=147.1

Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHHHHHHH
Q 018063          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWVSLGYF  197 (361)
Q Consensus       122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~~~~~~  197 (361)
                      +..+|.+++.++..+-..+.+..|.  .+.+|....-.|+++-.++-.+....++.    +....++.++.|+..+.+..
T Consensus        35 ~p~~gl~l~~vs~ff~~~~vv~t~~--~e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   35 KPNLGLLLLTVSYFFNSCMVVSTKV--LENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             CCccCceehhhHHHHhhHHHhhhhh--hccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence            3456777777774444455555554  46889999999966655555444333221    11222344556766666666


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCC---------------CCcHH
Q 018063          198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS---------------PPSVG  261 (361)
Q Consensus       198 ~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~---------------~~~~G  261 (361)
                      ..+++++|.+.+.|.+|..+.|+++.+++| ++||+.++...++..+.+.||+++++|..               ....|
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g  192 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG  192 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence            778999999999999999999999999997 48999999999999999999999998731               12468


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhH
Q 018063          262 DFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPW  341 (361)
Q Consensus       262 ~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  341 (361)
                      .+.++.++++-|.-.++.|++.++.   |......+..+++.+..++.....+.           +.++.     ...+|
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~---h~~msvsyf~~i~lV~s~I~~~~ig~-----------~~lP~-----cgkdr  253 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNA---HAIMSVSYFSLITLVVSLIGCASIGA-----------VQLPH-----CGKDR  253 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhccc---cEEEEehHHHHHHHHHHHHHHhhccc-----------eecCc-----cccce
Confidence            8888999988888888899998875   44444445455555655554433332           22222     34578


Q ss_pred             HHHHHHHHHHHHH
Q 018063          342 VPALYTGIFSTGI  354 (361)
Q Consensus       342 l~llylgv~~T~l  354 (361)
                      +.++.+|+++-+.
T Consensus       254 ~l~~~lGvfgfig  266 (346)
T KOG4510|consen  254 WLFVNLGVFGFIG  266 (346)
T ss_pred             EEEEEehhhhhHH
Confidence            8888888877443

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.35  E-value=4.6e-10  Score=105.67  Aligned_cols=214  Identities=17%  Similarity=0.174  Sum_probs=150.7

Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc---------CChhhHHHHHHHHHHHH
Q 018063          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR---------DDVKTRNAGIELGLWVS  193 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~---------~~~~~~~~~~l~G~~~~  193 (361)
                      ..+|+++.+.+.++||..+...|. ++++|+.++...|.+-+..+++.+....|         ++++.+....+.++...
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kl-l~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~   83 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKL-LEPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG   83 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            468999999999999999999997 47899999999999999887766543322         12233444556677777


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCcHHHHHHHHHHHHH
Q 018063          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPSVGDFLNFLSAIFF  272 (361)
Q Consensus       194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~~G~ll~L~aal~~  272 (361)
                      ..+..+.++..+-.+-++++=.+..|++..+++. ++|||+++.||++++++.+||.......+++.   ...+.=+++|
T Consensus        84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp---wval~la~sf  160 (293)
T COG2962          84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP---WVALALALSF  160 (293)
T ss_pred             HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHH
Confidence            7788889999998999999999999999999996 58999999999999999999998776544432   1234447899


Q ss_pred             HHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHH
Q 018063          273 GIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFST  352 (361)
Q Consensus       273 A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T  352 (361)
                      +.|-.. ||..+-    |+.+-....++.-...++...+..+...        ++     .+..+...|+.++..|+++ 
T Consensus       161 ~~Ygl~-RK~~~v----~a~~g~~lE~l~l~p~al~yl~~l~~~~--------~~-----~~~~~~~~~~LLv~aG~vT-  221 (293)
T COG2962         161 GLYGLL-RKKLKV----DALTGLTLETLLLLPVALIYLLFLADSG--------QF-----LQQNANSLWLLLVLAGLVT-  221 (293)
T ss_pred             HHHHHH-HHhcCC----chHHhHHHHHHHHhHHHHHHHHHHhcCc--------hh-----hhcCCchHHHHHHHhhHHH-
Confidence            999864 554432    4454444445544444444444333211        00     0001244677777777654 


Q ss_pred             HHHHHhh
Q 018063          353 GICLWIE  359 (361)
Q Consensus       353 ~lay~lq  359 (361)
                      +++..+.
T Consensus       222 avpL~lf  228 (293)
T COG2962         222 AVPLLLF  228 (293)
T ss_pred             HHHHHHH
Confidence            5666554

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.30  E-value=2.8e-11  Score=99.71  Aligned_cols=117  Identities=18%  Similarity=0.254  Sum_probs=97.1

Q ss_pred             HHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-c-c----CChhhHHHHHHHHHH-HHHHHHHHHHHHhhch
Q 018063          135 IVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-A-R----DDVKTRNAGIELGLW-VSLGYFVEALGLLTSD  207 (361)
Q Consensus       135 llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~-~-~----~~~~~~~~~~l~G~~-~~~~~~~~~~al~~ts  207 (361)
                      ++||...+..|...++.||....++|+.++++ ++++... + +    .+.+++......|.. ...++.+++.++++++
T Consensus         1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~   79 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS   79 (126)
T ss_pred             ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence            46999999999999999999999999999997 4443332 1 1    123455555666666 4677889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhc
Q 018063          208 AGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       208 a~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      ++.++.+.++.|+++.+++++ ++|++++++++|+++.++|++++.
T Consensus        80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS  125 (126)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999964 799999999999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.25  E-value=6.1e-11  Score=98.62  Aligned_cols=127  Identities=18%  Similarity=0.211  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC-------ChhhHHHHHHHHHHHHHHHHH
Q 018063          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD-------DVKTRNAGIELGLWVSLGYFV  198 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~-------~~~~~~~~~l~G~~~~~~~~~  198 (361)
                      ..++.++++++||...++.|+..+++||...++.|..+..+++..++...++       +.|.|....+-|+....++.+
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~   83 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLL   83 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHH
Confidence            4577889999999999999999999999999999999998888887765431       456677777788877888999


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      +|.+++.-.++...=+..+.|+++.++++ ++|||++..+|+|+++-.+|++++.
T Consensus        84 Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs  138 (140)
T COG2510          84 YFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence            99999999999988899999999999997 5899999999999999999998765

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.05  E-value=3.4e-09  Score=102.61  Aligned_cols=163  Identities=12%  Similarity=0.197  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhhhhccCCC------
Q 018063          184 AGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGML-GAIIPAHTWFGVLISALGVGMLECSGS------  256 (361)
Q Consensus       184 ~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll-~er~~~~~~igl~la~~Gv~ll~~~~~------  256 (361)
                      ..+....+-+...+++..++.+|+++...++.++.-+|+..++.++ .||.+..|.+++++.+.||+++...+.      
T Consensus       161 ~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~  240 (416)
T KOG2765|consen  161 LSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDL  240 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccC
Confidence            3344444456677788899999999999999999999999999764 799999999999999999999876632      


Q ss_pred             ---CCcHHHHHHHHHHHHHHHHHHHHHHhhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhh
Q 018063          257 ---PPSVGDFLNFLSAIFFGIHMLRTERISRST-KKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTML  332 (361)
Q Consensus       257 ---~~~~G~ll~L~aal~~A~~~v~~rk~~~~~-~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~  332 (361)
                         ....|+++++++|+.||+|+++.||...++ +++|.-.+-.+.-++..+++.|..++.....    .  +.+..+  
T Consensus       241 ~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~----~--e~F~lP--  312 (416)
T KOG2765|consen  241 PASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFG----E--ERFELP--  312 (416)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhc----c--CcccCC--
Confidence               236899999999999999999999988776 3444333333333334444444443332110    0  112222  


Q ss_pred             cccCChhhHHHHHHHHHHHHHHHHHh
Q 018063          333 WDWMVTFPWVPALYTGIFSTGICLWI  358 (361)
Q Consensus       333 ~~~~~~~~wl~llylgv~~T~lay~l  358 (361)
                          +......++..++++|+++=.+
T Consensus       313 ----~~~q~~~vv~~~ligtvvSDyl  334 (416)
T KOG2765|consen  313 ----SSTQFSLVVFNNLIGTVVSDYL  334 (416)
T ss_pred             ----CCceeEeeeHhhHHHHHHHHHH
Confidence                2334556777778888776544

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.03  E-value=3.7e-09  Score=87.34  Aligned_cols=97  Identities=19%  Similarity=0.242  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHhccC--------ChhhHHHHHHHHHHHH-HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-
Q 018063          158 AVRFVMSAIPFLPFVFWARD--------DVKTRNAGIELGLWVS-LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (361)
Q Consensus       158 ~~R~lia~liLl~~~~~~~~--------~~~~~~~~~l~G~~~~-~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-  227 (361)
                      .+|+..+.+++..+...+++        +++++.+.+..|+... .++.++++|+++++ +.++.+.++.|+++.++++ 
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            58999999888877655422        1233445555566654 67888999999999 5888999999999999996 


Q ss_pred             HhcCcccHHHHHHHHHHHHHhhhhccCC
Q 018063          228 MLGAIIPAHTWFGVLISALGVGMLECSG  255 (361)
Q Consensus       228 ll~er~~~~~~igl~la~~Gv~ll~~~~  255 (361)
                      ++|||+++++|++++++++|++++..++
T Consensus        81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~  108 (113)
T PF13536_consen   81 FFKERLSPRRWLAILLILIGVILIAWSD  108 (113)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHhhhh
Confidence            5899999999999999999999988764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=98.99  E-value=2.4e-08  Score=93.29  Aligned_cols=126  Identities=23%  Similarity=0.256  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCH--HHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHP--ASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGY  196 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P--~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~-~~~~  196 (361)
                      .+|.++.+++++.|+...+..|...++.+|  .....+|+.++.++++++....++    +.+++...+..|++. ..++
T Consensus       127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (260)
T TIGR00950       127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY  206 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999998877774  455557899999888887665322    233444455556553 5678


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhh
Q 018063          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG  249 (361)
Q Consensus       197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~  249 (361)
                      .+++.++++.+++.++.+.++.|++..++++ +++|+++..+++|.++.+.|+.
T Consensus       207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~  260 (260)
T TIGR00950       207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL  260 (260)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence            8999999999999999999999999999996 5899999999999999999973

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.68  E-value=1.3e-05  Score=77.31  Aligned_cols=160  Identities=16%  Similarity=0.154  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-
Q 018063          152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-  227 (361)
Q Consensus       152 ~P~~l~~~R~lia~liLl~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-  227 (361)
                      .|..+++.-++...++-.+.....+   .++..++.....+++......+.+.+++|++...-.++-+..|+.+++++. 
T Consensus        31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l  110 (303)
T PF08449_consen   31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL  110 (303)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence            3889999988887776665544332   233445666777888777778889999999999999999999999999996 


Q ss_pred             HhcCcccHHHHHHHHHHHHHhhhhccCCC-------C----CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHH
Q 018063          228 MLGAIIPAHTWFGVLISALGVGMLECSGS-------P----PSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLG  296 (361)
Q Consensus       228 ll~er~~~~~~igl~la~~Gv~ll~~~~~-------~----~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~  296 (361)
                      ++|+|.++++++++++-.+|+.+....+.       .    ...|+++.+++.++-+...+..+|..++++ .++....+
T Consensus       111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~-~~~~~~mf  189 (303)
T PF08449_consen  111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYG-KSPWELMF  189 (303)
T ss_pred             hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC-CcHHHHHH
Confidence            57999999999999999999998765421       1    124999999999999999999999988875 46788899


Q ss_pred             HHHHHHHHHHHHHHHH
Q 018063          297 YEICVVALLSTIWVLV  312 (361)
Q Consensus       297 ~~~l~~al~~l~~~l~  312 (361)
                      +..+++.++.++....
T Consensus       190 y~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  190 YTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998888877776665

; GO: 0055085 transmembrane transport

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.67  E-value=3.3e-06  Score=79.35  Aligned_cols=170  Identities=13%  Similarity=0.144  Sum_probs=119.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCC-
Q 018063          179 VKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS-  256 (361)
Q Consensus       179 ~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~-  256 (361)
                      +++.....+-+++....+.+.+.++++.+++.--++..+-.++++++++ ++|+|++++||+++.+-++|+.++-.++. 
T Consensus        14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~   93 (244)
T PF04142_consen   14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ   93 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence            3454555566677777788889999999999999999999999999996 58999999999999999999998754310 


Q ss_pred             -----------------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 018063          257 -----------------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSS  319 (361)
Q Consensus       257 -----------------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~  319 (361)
                                       +...|.++.++++++-++..++.+|..|+.+ .+...-+....+.+.++.++.....+ .+..
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~-~~~~  171 (244)
T PF04142_consen   94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSD-GSAI  171 (244)
T ss_pred             ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhccc-cccc
Confidence                             1247999999999999999999999998864 23333343334444444444433322 2211


Q ss_pred             CCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063          320 QDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI  358 (361)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~l  358 (361)
                      .        -.+.++..+...|..++..++.|-.+++.+
T Consensus       172 ~--------~~g~f~G~~~~~~~~i~~~a~gGllva~v~  202 (244)
T PF04142_consen  172 S--------ESGFFHGYSWWVWIVIFLQAIGGLLVAFVL  202 (244)
T ss_pred             c--------cCCchhhcchHHHHHHHHHHHhhHHHHHHH
Confidence            1        011222235567777777777776666654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=98.63  E-value=2e-06  Score=82.62  Aligned_cols=128  Identities=13%  Similarity=0.103  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYFV  198 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~-~~~~~~  198 (361)
                      ..|.++.+++++.|+...+..|...++.+|....... +++++++.++......    +...+...+.+|+.. ..+|.+
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l  225 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIGS-LIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL  225 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHH-HHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999887778888776554 5556666665544321    222233334556653 467889


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      +++++++.+++.++++.++.|++..++++ +++|+++..+++|.++.++|+++..
T Consensus       226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~  280 (293)
T PRK10532        226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999996 5899999999999999999988764

>PRK11689 aromatic amino acid exporter; Provisional

Probab=98.56  E-value=2.7e-06  Score=81.78  Aligned_cols=127  Identities=13%  Similarity=0.127  Sum_probs=96.8

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc-----CChhhHHHHHHHHHHHHHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR-----DDVKTRNAGIELGLWVSLGYFV  198 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~-----~~~~~~~~~~l~G~~~~~~~~~  198 (361)
                      ..|.++++++++.|+...+..|...++.++....+   ..+++++.+......     .+...+...+..|+....+|.+
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l  231 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA  231 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999998776778776533   333333333222221     1223444444555545567899


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      ++.++++.+++.++.+.++.|++..++++ +++|+++..+++|.++-+.|+++...
T Consensus       232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999996 58999999999999999999987643

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=98.50  E-value=6.2e-06  Score=79.09  Aligned_cols=129  Identities=10%  Similarity=0.034  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC------ChhhHHHHHHHHHHH-HHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD------DVKTRNAGIELGLWV-SLGY  196 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~------~~~~~~~~~l~G~~~-~~~~  196 (361)
                      ..|.++.+++++.|+......|..... ++.....+.+.++++++.++......      +.+.|......|+.. ..++
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~  227 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI  227 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999885433 34566778888888887776543211      223454555556653 4678


Q ss_pred             HHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          197 FVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       197 ~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      .+++.++++.++++++++.++.|++..++++ +++|+++..+++|.++-+.|++++..
T Consensus       228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999996 47999999999999999999988754

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.46  E-value=5.3e-06  Score=82.20  Aligned_cols=130  Identities=8%  Similarity=0.065  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCH-HHHHHHHHHHHHHHHHHHHHh-ccCChhh--------HHHHHHHHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHP-ASFCAVRFVMSAIPFLPFVFW-ARDDVKT--------RNAGIELGLWVS  193 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P-~~l~~~R~lia~liLl~~~~~-~~~~~~~--------~~~~~l~G~~~~  193 (361)
                      ..|.++++++++.|+...+..|......++ ...+++-..++++.+.+.... .+.+.+.        ....+..|+...
T Consensus       188 ~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t~  267 (358)
T PLN00411        188 LIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHHH
Confidence            458899999999999999999887666654 466667666666655444332 2211111        111222334334


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      ..|.++++++++.+++.+++..++.|++..++++ +++|+++..+++|.++.++|+++...
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            5788899999999999999999999999999997 58999999999999999999988764

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.38  E-value=0.0003  Score=68.45  Aligned_cols=224  Identities=12%  Similarity=0.145  Sum_probs=149.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhc-c---CCHHHHHHHHHHHHHHHHHHHHHhcc----CC------------hhhHHH
Q 018063          125 RSIFLLNVITIVYASDIPILKAAEE-I---MHPASFCAVRFVMSAIPFLPFVFWAR----DD------------VKTRNA  184 (361)
Q Consensus       125 ~g~l~llla~llWG~~~~~~K~~~~-~---~~P~~l~~~R~lia~liLl~~~~~~~----~~------------~~~~~~  184 (361)
                      .-++.+++..+.++......|+.-. +   ..|...++.--++-.++.+..++++.    .+            +++...
T Consensus        15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk   94 (345)
T KOG2234|consen   15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK   94 (345)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence            4556677778889999999998654 3   66777777766666665555544431    10            112222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC---C-----
Q 018063          185 GIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS---G-----  255 (361)
Q Consensus       185 ~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~---~-----  255 (361)
                      ..+-.+.....+.+++.++.+.+++.-.+...+-.+.+.++.. +++||.+++||.++++-++|+.++-.+   +     
T Consensus        95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~  174 (345)
T KOG2234|consen   95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS  174 (345)
T ss_pred             HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence            3333445555556888999999999999999999999999996 589999999999999999999988622   1     


Q ss_pred             ----CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhh
Q 018063          256 ----SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTM  331 (361)
Q Consensus       256 ----~~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~  331 (361)
                          .....|....+.+.+.-++..++.+|..++.+  .+..+--.|+-+-+++.........+.+..        .|.+
T Consensus       175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~--~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i--------~~~g  244 (345)
T KOG2234|consen  175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN--VSLWIRNIQLYFFGILFNLLTILLQDGEAI--------NEYG  244 (345)
T ss_pred             CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHhhcccccc--------ccCC
Confidence                12358999999999999999999999987653  333333344433333333333322232221        1334


Q ss_pred             hcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063          332 LWDWMVTFPWVPALYTGIFSTGICLWI  358 (361)
Q Consensus       332 ~~~~~~~~~wl~llylgv~~T~lay~l  358 (361)
                      .++..+...|..++-.++.|-.++.+.
T Consensus       245 ff~G~s~~vw~vVl~~a~gGLlvs~v~  271 (345)
T KOG2234|consen  245 FFYGYSSIVWLVVLLNAVGGLLVSLVM  271 (345)
T ss_pred             ccccccHHHHHHHHHHhccchhHHHHH
Confidence            444456677888887777766666543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.29  E-value=4.3e-06  Score=79.72  Aligned_cols=128  Identities=13%  Similarity=0.062  Sum_probs=87.7

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCHH----HHHHHHHHHHHHHHHHHHHhc-cCC--h--hhHHH-HHHHHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPA----SFCAVRFVMSAIPFLPFVFWA-RDD--V--KTRNA-GIELGLWVS  193 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~----~l~~~R~lia~liLl~~~~~~-~~~--~--~~~~~-~~l~G~~~~  193 (361)
                      .++.++.+++++.|+...+..|....+.+|.    ....+.+.+.++.+..+...+ +..  .  ..+.. ....++...
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  222 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGRSMFPYARQILPSATLGGLMIG  222 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHH
Confidence            3566778889999999999888754444442    233333333322222222221 111  1  11222 223333445


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhh
Q 018063          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML  251 (361)
Q Consensus       194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll  251 (361)
                      .+|.+++.++++.+++.++.+.++.|++..++++ +++|+++..+++|.++.++|++++
T Consensus       223 l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~  281 (281)
T TIGR03340       223 GAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL  281 (281)
T ss_pred             HHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence            6788999999999999999999999999999996 589999999999999999999764

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.23  E-value=5.9e-05  Score=72.55  Aligned_cols=131  Identities=15%  Similarity=0.113  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCC---HHHHHHHHHHHHHHHHHHHHH-hcc----------CChhhHHHHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMH---PASFCAVRFVMSAIPFLPFVF-WAR----------DDVKTRNAGIELG  189 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~---P~~l~~~R~lia~liLl~~~~-~~~----------~~~~~~~~~~l~G  189 (361)
                      ..|.++.+++++.|+...+..|...+..+   .....++=.+++.+.+..... ..+          .+...+...+.+|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            46889999999999999999998654332   233333334444433332221 111          1223444445556


Q ss_pred             HHH-HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063          190 LWV-SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (361)
Q Consensus       190 ~~~-~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~  254 (361)
                      ++. ..+|.+++.++++.++++++.+..+.|++..++++ +++|+++..+++|.++.++|+.+...+
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~  288 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG  288 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence            553 46788999999999999999999999999999996 589999999999999999999876543

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.21  E-value=2.3e-05  Score=75.39  Aligned_cols=130  Identities=16%  Similarity=0.094  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhcc-CC--hhhH-----------HH--H
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWAR-DD--VKTR-----------NA--G  185 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~~~~~-~~--~~~~-----------~~--~  185 (361)
                      ..|.++.+++++.|+...+..|...+  +.||..+.++-..++++.++++..... ..  ..++           ..  .
T Consensus       144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (302)
T TIGR00817       144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS  223 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence            56899999999999999999998877  799999999999999988888765321 11  1100           01  1


Q ss_pred             HHHHH-HHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          186 IELGL-WVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       186 ~l~G~-~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      +..+. .....+.+++.+++++++..++++..+.|+++.++++ +++|+++..+++|.++.++|+.+...
T Consensus       224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence            11222 1111224556799999999999999999999999996 58999999999999999999987643

specificities overlap.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.11  E-value=0.00021  Score=66.94  Aligned_cols=129  Identities=16%  Similarity=0.273  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHH-HHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHH-HHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCA-VRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVS-LGYFV  198 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~-~R~lia~liLl~~~~~~~---~~~~~~~~~~l~G~~~~-~~~~~  198 (361)
                      ..|.++.+++.+.|+...+..|... ..++..... +-+.....+..+......   ...+.+......|+... .++.+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~  231 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL  231 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999766 777777776 333322222222222211   22345556666676655 57889


Q ss_pred             HHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          199 EALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       199 ~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      ++.+++..+++..+.+..+.|++..++++ +++|+++..+++|.++-+.|+.+...
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~  287 (292)
T COG0697         232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL  287 (292)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999886 47999999999999999999987654

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.10  E-value=4.4e-05  Score=73.38  Aligned_cols=127  Identities=20%  Similarity=0.184  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHH---HHHHHHHHHHHHHhccC-ChhhHHHHHHHHHHHHHHHHHH
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVR---FVMSAIPFLPFVFWARD-DVKTRNAGIELGLWVSLGYFVE  199 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R---~lia~liLl~~~~~~~~-~~~~~~~~~l~G~~~~~~~~~~  199 (361)
                      .+|++..+++++.++......|..  +.||....+.-   .+++++++.....+.+. ..+......+.|+.-..++.++
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~ia~~~y  228 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHILAKPLKKYAILLNILPGLMWGIGNFFY  228 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            569999999999999999999975  58888884444   34444444333211111 1223334455777766778888


Q ss_pred             HHHHh-hchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHH----HHHHHHHHHhhhhc
Q 018063          200 ALGLL-TSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTW----FGVLISALGVGMLE  252 (361)
Q Consensus       200 ~~al~-~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~----igl~la~~Gv~ll~  252 (361)
                      +.+.+ +.+++.+.++.+..|+...++++ ++||+.+++++    +|.++-+.|+.++.
T Consensus       229 ~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       229 LFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence            89999 99999999999999999999996 58999999999    99999999988763

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.09  E-value=0.00013  Score=60.36  Aligned_cols=60  Identities=20%  Similarity=0.210  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      ...+.++..++++.+.+.+..+.++.++++.++++ ++|||++.+|++|+.+.++|++++.
T Consensus        48 ~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         48 GLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            45677888999999999999888899999999996 5899999999999999999998764

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.03  E-value=0.00022  Score=68.03  Aligned_cols=134  Identities=13%  Similarity=0.046  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHhhhhccCCCCCc-H
Q 018063          183 NAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGMLG-AIIPAHTWFGVLISALGVGMLECSGSPPS-V  260 (361)
Q Consensus       183 ~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~ll~-er~~~~~~igl~la~~Gv~ll~~~~~~~~-~  260 (361)
                      ++..-.|+.....-.+-+++++|++.+.-+..=+..++|+.+++.++| ||.++.-..-+++-.+|+.+.+..+.+++ .
T Consensus        85 r~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~  164 (349)
T KOG1443|consen   85 RRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIE  164 (349)
T ss_pred             HHhhhhhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeeh
Confidence            344556666666667778899999888777777889999999998876 78888777788888889988888877764 7


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccC--CCChHHHHHHHHHHHHHHHHHHHHHhccC
Q 018063          261 GDFLNFLSAIFFGIHMLRTERISRSTK--KENFLPLLGYEICVVALLSTIWVLVGGWF  316 (361)
Q Consensus       261 G~ll~L~aal~~A~~~v~~rk~~~~~~--~~~~l~l~~~~~l~~al~~l~~~l~~~~~  316 (361)
                      |..+.++++++-++-....+.+.++.+  ..+|........-.-.+.++|..+.+|+.
T Consensus       165 Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~  222 (349)
T KOG1443|consen  165 GFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGL  222 (349)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHccc
Confidence            988888888877776666666665543  23555555544444455566666667754

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.02  E-value=0.00017  Score=69.34  Aligned_cols=126  Identities=8%  Similarity=-0.045  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHhcc--C---ChhhHHHHHHHHHHHHHHHHHHHH
Q 018063          129 LLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR--D---DVKTRNAGIELGLWVSLGYFVEAL  201 (361)
Q Consensus       129 ~llla~llWG~~~~~~K~~~~~--~~P~~l~~~R~lia~liLl~~~~~~~--~---~~~~~~~~~l~G~~~~~~~~~~~~  201 (361)
                      ..+++++.|+...+..|....+  .+......+=..++.+.++++.....  .   ....+......|+....++.+++.
T Consensus       153 ~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~~  232 (296)
T PRK15430        153 IALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFTA  232 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788999998888876432  22233333333333333222111100  0   111122233445555577889999


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063          202 GLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (361)
Q Consensus       202 al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~  254 (361)
                      ++++.+++.++.+.++.|++..++++ +++|+++..+++|.++.++|+.++..+
T Consensus       233 a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~  286 (296)
T PRK15430        233 AATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD  286 (296)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999996 589999999999999999888877543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.98  E-value=0.00046  Score=59.16  Aligned_cols=125  Identities=18%  Similarity=0.153  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhc-------cCCHHHHHHHHHHHHHHHHHHHHHhc-cCC---------h-------hh
Q 018063          126 SIFLLNVITIVYASDIPILKAAEE-------IMHPASFCAVRFVMSAIPFLPFVFWA-RDD---------V-------KT  181 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~-------~~~P~~l~~~R~lia~liLl~~~~~~-~~~---------~-------~~  181 (361)
                      |.++.+.+.+.-+...+..|....       ..++..+..+-...+.+++++..... +.+         .       +.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            456778888889999998887653       47999999999999999988876532 110         0       11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhh
Q 018063          182 RNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (361)
Q Consensus       182 ~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~l  250 (361)
                      +...+..|+..+..+...+.-++++++-..+++...-.+.+.++++ +++|+++..+++|++++++|+++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence            2223344555555566777889999999999999999999999996 48999999999999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.96  E-value=0.00037  Score=68.79  Aligned_cols=128  Identities=11%  Similarity=0.126  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHhcc-------CCHHHHHHHHHHHHHHHHHHHHHhc-cCC----h-------hh--H
Q 018063          124 IRSIFLLNVITIVYASDIPILKAAEEI-------MHPASFCAVRFVMSAIPFLPFVFWA-RDD----V-------KT--R  182 (361)
Q Consensus       124 ~~g~l~llla~llWG~~~~~~K~~~~~-------~~P~~l~~~R~lia~liLl~~~~~~-~~~----~-------~~--~  182 (361)
                      ..|.++.+++.+.|+...+..|...++       +++..+..+-..+++++++|+.... ...    +       ..  +
T Consensus       193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (350)
T PTZ00343        193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK  272 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence            458999999999999999999987763       5677676666778888888875521 110    0       01  1


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhh
Q 018063          183 NAGI----ELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML  251 (361)
Q Consensus       183 ~~~~----l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll  251 (361)
                      ....    ..|+..+..+...+++++++++...++...+-|+++.++++ +++|+++..+++|.++.++|+.+.
T Consensus       273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY  346 (350)
T PTZ00343        273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY  346 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence            1111    11222222223344699999999999999999999999997 589999999999999999999764

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.0029  Score=60.87  Aligned_cols=208  Identities=13%  Similarity=0.092  Sum_probs=139.2

Q ss_pred             hHHHHHHHhcc--CCHHHH-HHHHHHHHHHHHHHHHHhcc------CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHH
Q 018063          140 DIPILKAAEEI--MHPASF-CAVRFVMSAIPFLPFVFWAR------DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGR  210 (361)
Q Consensus       140 ~~~~~K~~~~~--~~P~~l-~~~R~lia~liLl~~~~~~~------~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~  210 (361)
                      .-+.-|.++..  .+-... ..+..+...+++.. +.+-|      .+++..+..+-..++.......-..+++|.+...
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~-lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm  105 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLV-LKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPM  105 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchH
Confidence            44566887764  443333 33555555544443 33221      2333333333333443333334456889999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCCCCc-HHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 018063          211 ASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGSPPS-VGDFLNFLSAIFFGIHMLRTERISRSTKK  288 (361)
Q Consensus       211 aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~~~~-~G~ll~L~aal~~A~~~v~~rk~~~~~~~  288 (361)
                      -.++-...|+++++.+. ++|.|.++..|.++....+|......++.+++ .|..|++...++-+.+.+..|+..+..+ 
T Consensus       106 ~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~~v~~kk~vd~~~-  184 (314)
T KOG1444|consen  106 FTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAFVVYVKKSVDSAN-  184 (314)
T ss_pred             HHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHHHHHHHHhhcccc-
Confidence            99999999999999996 57877888999999999998888777766664 5899999999999999999998776542 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHh
Q 018063          289 ENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLWI  358 (361)
Q Consensus       289 ~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~l  358 (361)
                      .+-..+.++..+.....+....+++|+++.        ...+ ...|.+...|..++.-++++-++.|..
T Consensus       185 l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~--------l~~~-~~~~~~~~~~~~~~lScv~gf~isy~s  245 (314)
T KOG1444|consen  185 LNKFGLVFYNNLLSLPPLLILSFITGELDA--------LSLN-FDNWSDSSVLVVMLLSCVMGFGISYTS  245 (314)
T ss_pred             ccceeEEeehhHHHHHHHHHHHHHhcchHH--------HHhh-cccccchhHHHHHHHHHHHHHHHHHHH
Confidence            345567788888877777777777765320        0000 011234667888888888888887753

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.87  E-value=0.00027  Score=66.75  Aligned_cols=170  Identities=20%  Similarity=0.261  Sum_probs=120.8

Q ss_pred             hhHHHHHHHhc----cC----CHHHHHHHHHHHHHHHHHHHHHhccC-Ch------------h---hHHHH--HHHHHHH
Q 018063          139 SDIPILKAAEE----IM----HPASFCAVRFVMSAIPFLPFVFWARD-DV------------K---TRNAG--IELGLWV  192 (361)
Q Consensus       139 ~~~~~~K~~~~----~~----~P~~l~~~R~lia~liLl~~~~~~~~-~~------------~---~~~~~--~l~G~~~  192 (361)
                      .+.+..|++-+    +.    +|+..+..-|+-=.+++..+.+.|++ +.            +   ..+..  +.-.++-
T Consensus        17 ~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~D   96 (372)
T KOG3912|consen   17 FNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALCD   96 (372)
T ss_pred             HHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHHH
Confidence            46677887642    22    36655555555555666665443311 00            1   11111  1123343


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCC-----------CCCcH
Q 018063          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG-----------SPPSV  260 (361)
Q Consensus       193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~-----------~~~~~  260 (361)
                      ..+-.+.+.|+.+|+++.--.+-+...+|+.+++. +++++++.++|+|+..-..|++++...+           .+...
T Consensus        97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iit  176 (372)
T KOG3912|consen   97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIIT  176 (372)
T ss_pred             HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchh
Confidence            44556778899999999888888888899999995 6899999999999999999998775431           13468


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHH
Q 018063          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIW  309 (361)
Q Consensus       261 G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~  309 (361)
                      |+++.+.+-+.-|+..+.-+|..++++ ++|+..+.|+-++|.++....
T Consensus       177 GdllIiiaqiivaiQ~v~Eek~l~~~n-V~pl~avg~eGlfG~v~~slL  224 (372)
T KOG3912|consen  177 GDLLIIIAQIIVAIQMVCEEKQLKKSN-VAPLQAVGWEGLFGLVILSLL  224 (372)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHhhhhhhHHHHHHHHH
Confidence            999999999999999999999888774 689999999998885544333

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.82  E-value=0.00068  Score=57.53  Aligned_cols=117  Identities=17%  Similarity=0.075  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHh
Q 018063          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLL  204 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~al~  204 (361)
                      +++++++..++=+..-++.|....+.+....... . +..+.    ..   .+  . ...+..|+. ....+.++..+++
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~-~-~~~~~----~~---~~--p-~~~i~lgl~~~~la~~~w~~aL~   70 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWD-F-IAALL----AF---GL--A-LRAVLLGLAGYALSMLCWLKALR   70 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhH-H-HHHHH----HH---hc--c-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6778888888888889999998876654332221 1 10000    00   01  0 112344544 3456888999999


Q ss_pred             hchHHHHHHHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063          205 TSDAGRASFISLFTVIVVPLFDG---MLGAIIPAHTWFGVLISALGVGMLECS  254 (361)
Q Consensus       205 ~tsa~~aaii~~~~Pv~v~lla~---ll~er~~~~~~igl~la~~Gv~ll~~~  254 (361)
                      ..+.+.+.-+.+..++++.+.++   +++|+++..+++|+++-++|++++...
T Consensus        71 ~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~  123 (129)
T PRK02971         71 YLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP  123 (129)
T ss_pred             hCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence            99999998888888888877775   589999999999999999999988654

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=97.77  E-value=0.00014  Score=70.54  Aligned_cols=172  Identities=14%  Similarity=0.139  Sum_probs=132.5

Q ss_pred             HHHHHhc--c-CCHHHHHHHHHHHHHHHHHHHHHhcc---C---ChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Q 018063          143 ILKAAEE--I-MHPASFCAVRFVMSAIPFLPFVFWAR---D---DVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASF  213 (361)
Q Consensus       143 ~~K~~~~--~-~~P~~l~~~R~lia~liLl~~~~~~~---~---~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aai  213 (361)
                      .-|..+.  + --|..++.+++..+.+.++.....+-   .   ++..+...+-+|+....+-.+-..++.+.+++-.-.
T Consensus        35 ~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~  114 (316)
T KOG1441|consen   35 LNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQT  114 (316)
T ss_pred             eeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHH
Confidence            4577666  4 35788888877777766655433321   1   113456667778887777778889999999999999


Q ss_pred             HHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCCCC-cHHHHHHHHHHHHHHHHHHHHHHhhhc-cCCCC
Q 018063          214 ISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGSPP-SVGDFLNFLSAIFFGIHMLRTERISRS-TKKEN  290 (361)
Q Consensus       214 i~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~~~-~~G~ll~L~aal~~A~~~v~~rk~~~~-~~~~~  290 (361)
                      +=++.|+++.+++++ .+|+.++..+..+..-..||.+-...+.++ ..|.+.++++.+..+...++.++..++ ....|
T Consensus       115 iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~  194 (316)
T KOG1441|consen  115 IKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGESLN  194 (316)
T ss_pred             HHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccC
Confidence            999999999999975 688999999999999999998877766555 489999999999999999999998842 22467


Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHhc
Q 018063          291 FLPLLGYEICVVALLST-IWVLVGG  314 (361)
Q Consensus       291 ~l~l~~~~~l~~al~~l-~~~l~~~  314 (361)
                      ++.+..++--++.+.++ |+....+
T Consensus       195 ~~~ll~y~ap~s~~~Ll~P~~~~~~  219 (316)
T KOG1441|consen  195 SMNLLYYTAPISLIFLLIPFLDYVE  219 (316)
T ss_pred             chHHHHHhhhHHHHHHhcchHhhhc
Confidence            88888888878777777 6555444

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=97.72  E-value=3.4e-06  Score=78.32  Aligned_cols=155  Identities=20%  Similarity=0.276  Sum_probs=116.0

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhccCChh-hHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-h
Q 018063          152 HPASFCAVRFVMSAIPFLPFVFWARDDVK-TRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-L  229 (361)
Q Consensus       152 ~P~~l~~~R~lia~liLl~~~~~~~~~~~-~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l  229 (361)
                      .|..-.|+-+.+-+++-.+++..|++..+ .|+..+++++.-.-++++...|-+||+...+.++-.-....+.+++|+ +
T Consensus        47 ~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fL  126 (336)
T KOG2766|consen   47 APTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFL  126 (336)
T ss_pred             CccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHH
Confidence            35566777777777777777666553322 345556666654444445567889999998888887766777888875 7


Q ss_pred             cCcccHHHHHHHHHHHHHhhhhccCC---------CCCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHH
Q 018063          230 GAIIPAHTWFGVLISALGVGMLECSG---------SPPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEIC  300 (361)
Q Consensus       230 ~er~~~~~~igl~la~~Gv~ll~~~~---------~~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l  300 (361)
                      |.|.+..++.|++++++|+++++..+         .+...||.+.+++|-+||+.++.-..+.++.   |...+....-+
T Consensus       127 ktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~---d~~elm~~lgL  203 (336)
T KOG2766|consen  127 KTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA---DRVELMGFLGL  203 (336)
T ss_pred             HHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEecceeeeeccccHHHHHhcC---cHHHHHHHHHH
Confidence            99999999999999999999886542         2346899999999999999999877777765   56666666667


Q ss_pred             HHHHHHHHH
Q 018063          301 VVALLSTIW  309 (361)
Q Consensus       301 ~~al~~l~~  309 (361)
                      +|++++.+-
T Consensus       204 fGaIIsaIQ  212 (336)
T KOG2766|consen  204 FGAIISAIQ  212 (336)
T ss_pred             HHHHHHHHH
Confidence            888887776

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.54  E-value=0.0012  Score=59.50  Aligned_cols=92  Identities=15%  Similarity=0.123  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCCC---CCcHHHHHHHHHHH
Q 018063          195 GYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSGS---PPSVGDFLNFLSAI  270 (361)
Q Consensus       195 ~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~~---~~~~G~ll~L~aal  270 (361)
                      ..+.+..+++..+++.++-+....-.|+.+++++ +|+|...-++++.++++.|++++...+.   +...|+..++++++
T Consensus        66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~  145 (290)
T KOG4314|consen   66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAF  145 (290)
T ss_pred             CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHH
Confidence            3567778999999999999999999999999975 8999999999999999999999886553   34689999999999


Q ss_pred             HHHHHHHHHHHhhhcc
Q 018063          271 FFGIHMLRTERISRST  286 (361)
Q Consensus       271 ~~A~~~v~~rk~~~~~  286 (361)
                      ..|+|-+..|+.....
T Consensus       146 ~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  146 MAALYKVLFKMFIGNA  161 (290)
T ss_pred             HHHHHHHHHHHHhccC
Confidence            9999999999987543

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.53  E-value=0.014  Score=57.61  Aligned_cols=151  Identities=18%  Similarity=0.098  Sum_probs=101.1

Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHH----h-------ccCChhhHHHHHHH
Q 018063          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMH--PASFCAVRFVMSAIPFLPFVF----W-------ARDDVKTRNAGIEL  188 (361)
Q Consensus       122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~--P~~l~~~R~lia~liLl~~~~----~-------~~~~~~~~~~~~l~  188 (361)
                      +-..|++..++++++||+.++..|. ....+  -++.+..  +++.++ .++..    .       +..+.+.+...++.
T Consensus         4 ~~~~G~~~~~i~~~~~GS~~~p~K~-~k~w~wE~~W~v~g--i~~wl~-~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~   79 (345)
T PRK13499          4 AIILGIIWHLIGGASSGSFYAPFKK-VKKWSWETMWSVGG--IFSWLI-LPWLIAALLLPDFWAYYSSFSGSTLLPVFLF   79 (345)
T ss_pred             hhHHHHHHHHHHHHHhhcccccccc-cCCCchhHHHHHHH--HHHHHH-HHHHHHHHHhhhHHHHHHhcCHHHHHHHHHH
Confidence            3467999999999999999999998 33333  2222110  111111 11111    0       11234455666777


Q ss_pred             HHHHHHHHHHHHHHHhhchHHHHH-HHHHHHHHHHHHHHHH-hcCcc-------cHHHHHHHHHHHHHhhhhcc----CC
Q 018063          189 GLWVSLGYFVEALGLLTSDAGRAS-FISLFTVIVVPLFDGM-LGAII-------PAHTWFGVLISALGVGMLEC----SG  255 (361)
Q Consensus       189 G~~~~~~~~~~~~al~~tsa~~aa-ii~~~~Pv~v~lla~l-l~er~-------~~~~~igl~la~~Gv~ll~~----~~  255 (361)
                      |++-..++..++.++++...+.+- +-.+++-+...++..+ ++|-.       ...-.+|+++.++|+++...    .+
T Consensus        80 G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~  159 (345)
T PRK13499         80 GALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKE  159 (345)
T ss_pred             HHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            887778888899999998888774 4456666777777754 45421       14567899999999998866    21


Q ss_pred             ----------CCCcHHHHHHHHHHHHHHHHH
Q 018063          256 ----------SPPSVGDFLNFLSAIFFGIHM  276 (361)
Q Consensus       256 ----------~~~~~G~ll~L~aal~~A~~~  276 (361)
                                .+...|.++++++.+.+++|.
T Consensus       160 ~~~~~~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        160 RKMGIKKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             cccccccccccchHhHHHHHHHHHHHHHHHH
Confidence                      124689999999999999999

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0041  Score=58.16  Aligned_cols=127  Identities=15%  Similarity=0.117  Sum_probs=99.4

Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccC----ChhhHHHHHHHHHHH-HHHHH
Q 018063          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARD----DVKTRNAGIELGLWV-SLGYF  197 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~----~~~~~~~~~l~G~~~-~~~~~  197 (361)
                      +..|..+.+.+..+|...-+..|-+-+..+--.-+..-+++++++.+|+-...-.    .+.-....+..|++. .+.|.
T Consensus       146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs  225 (292)
T COG5006         146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS  225 (292)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence            3568899999999999999999877655666667777889999999998664321    222233334455554 36799


Q ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhh
Q 018063          198 VEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVG  249 (361)
Q Consensus       198 ~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~  249 (361)
                      +...+++..+...-+++.++.|.+..+.++ +++|+++..||++++.-+++..
T Consensus       226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa  278 (292)
T COG5006         226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA  278 (292)
T ss_pred             HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999996 5899999999999887666543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.18  E-value=0.015  Score=47.98  Aligned_cols=69  Identities=16%  Similarity=0.166  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhh
Q 018063          183 NAGIELGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGML  251 (361)
Q Consensus       183 ~~~~l~G~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll  251 (361)
                      ......-+.....|++...++++.|.+.+ ++-.+.--+.+.+.+. +++|+++..|++|+.+-++|++.+
T Consensus        36 ~~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         36 IYGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            33334444445567788889999999887 5556666677777775 589999999999999999999876

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=97.03  E-value=0.018  Score=56.64  Aligned_cols=132  Identities=14%  Similarity=0.014  Sum_probs=95.6

Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-ccCC-----h--hhHHHHHHHHHHHH
Q 018063          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-ARDD-----V--KTRNAGIELGLWVS  193 (361)
Q Consensus       122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~-~~~~-----~--~~~~~~~l~G~~~~  193 (361)
                      +..+|.++++++++++|.+.+..|....+.|+.++...=-+++.++..+.+.. ++..     +  +.....+..++.++
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf  244 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLF  244 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHH
Confidence            34789999999999999999999999888999888877777777776655432 2211     1  11112122233345


Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          194 LGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       194 ~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      ..|.+....++++++....+=.-+..++..++.++ +++++++..++|.++-++|+++...
T Consensus       245 ~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  245 LFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEc
Confidence            55666677788888876655555667788888864 7999999999999999999988754

Some of the sequences in this family are annotated as putative membrane proteins.

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.02  E-value=0.0028  Score=52.42  Aligned_cols=108  Identities=17%  Similarity=0.226  Sum_probs=70.6

Q ss_pred             HHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHH-HHHHHHHHHHHHhhchHH
Q 018063          131 NVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLW-VSLGYFVEALGLLTSDAG  209 (361)
Q Consensus       131 lla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~-~~~~~~~~~~al~~tsa~  209 (361)
                      ++.+++||.+.+++|.+..+.++..-.. +..-....++          +.++.  ..++. +-.+-..|++.+...+.+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~Ll----------~n~~y--~ipf~lNq~GSv~f~~~L~~~dlS   68 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKFLL----------LNPKY--IIPFLLNQSGSVLFFLLLGSADLS   68 (113)
T ss_pred             eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHHHH----------HhHHH--HHHHHHHHHHHHHHHHHHhcCCce
Confidence            4568899999999999877655443331 3221111110          11222  22322 223455667788888887


Q ss_pred             HHHHH-HHHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhhhh
Q 018063          210 RASFI-SLFTVIVVPLFDGMLGAII-PAHTWFGVLISALGVGML  251 (361)
Q Consensus       210 ~aaii-~~~~Pv~v~lla~ll~er~-~~~~~igl~la~~Gv~ll  251 (361)
                      .+.-+ .++.-+++.+.+++++|+. ++++++|+++.+.|+.+.
T Consensus        69 lavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   69 LAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             eeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            77655 4777788888888887776 578899999999999764

Many members are annotated as potential transmembrane proteins.

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.82  E-value=0.019  Score=46.91  Aligned_cols=65  Identities=11%  Similarity=0.064  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063          188 LGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       188 ~G~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      .-+.....|++...+++..|.+.+ ++-.+.--+.+.+.+. ++||+++..+++|+.+-++|++.+-
T Consensus        35 ~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         35 TVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence            333444567778889999998887 5556677777778885 5899999999999999999998763

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.81  E-value=0.053  Score=52.24  Aligned_cols=127  Identities=14%  Similarity=0.111  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHh--ccCC----------hhhHHHHHHHHHH
Q 018063          126 SIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFW--ARDD----------VKTRNAGIELGLW  191 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~~~--~~~~----------~~~~~~~~l~G~~  191 (361)
                      |+++++++.++=|...+..+....  +.++.+..++-.+++.+++++....  .+..          +..+...++..+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            899999999999999999988775  6899999999999998888776555  2211          1122333444444


Q ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063          192 VSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       192 ~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      ...+..+.+.-++..++-..+++..+--+++.+++. +++++++..+|+|+++.+.|..+=.
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~  296 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYS  296 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHH
Confidence            445555555667788888888888888899999996 4899999999999999999987643

; GO: 0055085 transmembrane transport

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.78  E-value=0.017  Score=47.19  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063          188 LGLWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       188 ~G~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      .-+.....|.+...++++.+.+.+ ++-.+.-.+.+.+.++ +++|+++..+++|+.+-++|++.+-
T Consensus        36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk  102 (106)
T COG2076          36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLK  102 (106)
T ss_pred             HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhh
Confidence            333444567788899999999988 5666777777888886 5899999999999999999998764

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=96.75  E-value=0.037  Score=52.65  Aligned_cols=117  Identities=17%  Similarity=-0.007  Sum_probs=79.7

Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH-H--hccCChhhHHHHHHHHHHHHHHHHHH
Q 018063          123 KIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFV-F--WARDDVKTRNAGIELGLWVSLGYFVE  199 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~-~--~~~~~~~~~~~~~l~G~~~~~~~~~~  199 (361)
                      ..++++.++++.+.+....++.|.  .+++|....+= ..++-++-..+. .  .+....|...+.++.|+....+..++
T Consensus       136 ~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lP-qaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~  212 (269)
T PF06800_consen  136 MKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLP-QAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFY  212 (269)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHH-HHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHH
Confidence            467889999999888887778887  45677655542 333332222221 1  12122233344567788777788888


Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHH
Q 018063          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVL  242 (361)
Q Consensus       200 ~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~  242 (361)
                      +.+.+....+.+-.+..+.+++..+.+. ++||+.+++++...+
T Consensus       213 ~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~  256 (269)
T PF06800_consen  213 LISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTL  256 (269)
T ss_pred             HHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHH
Confidence            8899988888888899999999999886 489998877665444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.72  E-value=0.021  Score=47.81  Aligned_cols=64  Identities=14%  Similarity=0.285  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          190 LWVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       190 ~~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      ++....++++..++++.+.+.+ ++..++.-+.+.+++. +++|+++..+++|+.+-++|++++-.
T Consensus        38 ~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         38 VMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            3444567788889999998888 4445677778888885 58999999999999999999988754

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.70  E-value=0.0041  Score=58.76  Aligned_cols=131  Identities=16%  Similarity=0.219  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCC---CC-CcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 018063          216 LFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSG---SP-PSVGDFLNFLSAIFFGIHMLRTERISRSTKKEN  290 (361)
Q Consensus       216 ~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~---~~-~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~  290 (361)
                      ++..+|+.++.. ++|+|-+..-..+.++-+.|-.+=+..+   +. ...|.+++..+.++-|+..+..||.....++ .
T Consensus       136 sLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~-~  214 (347)
T KOG1442|consen  136 SLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD-C  214 (347)
T ss_pred             chhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhheecccccC-e
Confidence            356678888886 5788887777777766666665533332   12 3689999999999999999999987655431 3


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHH
Q 018063          291 FLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGICLW  357 (361)
Q Consensus       291 ~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~lay~  357 (361)
                      ...++++..+.+.++.+|...+.+..+...+++       ..   .+...|..+..-|+++-.++|.
T Consensus       215 iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~-------~l---~a~~Fw~~mtLsglfgF~mgyv  271 (347)
T KOG1442|consen  215 IWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP-------HL---PAIKFWILMTLSGLFGFAMGYV  271 (347)
T ss_pred             ehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc-------cc---hHHHHHHHHHHHHHHHHHhhhe
Confidence            567888888888888888888777554332211       11   2456888999999998888775

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.67  E-value=0.027  Score=46.42  Aligned_cols=63  Identities=16%  Similarity=0.262  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       191 ~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      .....+.++..++++.|.+.+ ++-.++.-+.+.++++ +++|+++..+++|+.+-++|++++-.
T Consensus        39 ~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            344567777888999988887 4445566677777885 58999999999999999999998754

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=96.25  E-value=0.08  Score=48.88  Aligned_cols=146  Identities=10%  Similarity=0.083  Sum_probs=102.7

Q ss_pred             HHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccCCC--------CCcHHHHHHHHHHH
Q 018063          200 ALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECSGS--------PPSVGDFLNFLSAI  270 (361)
Q Consensus       200 ~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~~~--------~~~~G~ll~L~aal  270 (361)
                      .-+++|.+...-++.-.+..+.++.... ++|.|++.......++-++.-++-..++.        .++.|.+|+....+
T Consensus        86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~Ncl  165 (309)
T COG5070          86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCL  165 (309)
T ss_pred             ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhH
Confidence            3577788887777777777777777775 58999998888877776666555544442        35789999999999


Q ss_pred             HHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHH
Q 018063          271 FFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIF  350 (361)
Q Consensus       271 ~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~  350 (361)
                      .-+.|.+..|+..+-.+ ..-....+|..+.+--+++.+.+++|++++.      .     ..+..+.....++..-|+.
T Consensus       166 ssaafVL~mrkri~ltN-f~d~dtmfYnNllslPiL~~~s~~~edws~~------n-----~annl~~d~l~am~ISgl~  233 (309)
T COG5070         166 SSAAFVLIMRKRIKLTN-FKDFDTMFYNNLLSLPILLSFSFLFEDWSPG------N-----LANNLSVDSLMAMFISGLC  233 (309)
T ss_pred             hHHHHHHHHHHhhcccc-cchhhHHHHhhhHHHHHHHHHHHHhccCCcc------h-----hhcCCChHHHHHHHHHHHH
Confidence            99999999888654322 1235567888888877888888888866421      1     1112345566677777877


Q ss_pred             HHHHHHH
Q 018063          351 STGICLW  357 (361)
Q Consensus       351 ~T~lay~  357 (361)
                      +-++.|.
T Consensus       234 svgiSy~  240 (309)
T COG5070         234 SVGISYC  240 (309)
T ss_pred             Hhhhhhc
Confidence            7777663

>TIGR00688 rarD rarD protein

Probab=95.70  E-value=0.28  Score=45.75  Aligned_cols=98  Identities=10%  Similarity=0.045  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhcc------CC-hhhHHHHHHHHHHHHHHHHHHHH
Q 018063          129 LLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWAR------DD-VKTRNAGIELGLWVSLGYFVEAL  201 (361)
Q Consensus       129 ~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~------~~-~~~~~~~~l~G~~~~~~~~~~~~  201 (361)
                      ..+++++.|+...+..|...+. ++......-.. ...+..+......      .+ .++|...+..|+....+|.+++.
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~~  227 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKNT-DLAGFCLETLS-LMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFVI  227 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCC-CcchHHHHHHH-HHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788899888888875432 22222221111 1111111111111      11 23566666777766678999999


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHH
Q 018063          202 GLLTSDAGRASFISLFTVIVVPLFDGM  228 (361)
Q Consensus       202 al~~tsa~~aaii~~~~Pv~v~lla~l  228 (361)
                      ++++.+++.++.+.++.|++..+++.+
T Consensus       228 a~~~~~a~~~s~~~yl~Pv~~~~~~~~  254 (256)
T TIGR00688       228 AANRLPLNLLGLLQYIGPTIMMLCVSF  254 (256)
T ss_pred             HHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998865

This uncharacterized protein is predicted to have many membrane-spanning domains.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.63  E-value=0.19  Score=46.76  Aligned_cols=126  Identities=16%  Similarity=0.086  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhccCC--------CCC
Q 018063          188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLECSG--------SPP  258 (361)
Q Consensus       188 ~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~~~--------~~~  258 (361)
                      ..+..-..+...+.+++|.+=-...+--+.-|+=+++++.+ .+++.++++...++..++||.+....+        ..+
T Consensus        91 cs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~  170 (337)
T KOG1580|consen   91 CSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTF  170 (337)
T ss_pred             HHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCccccc
Confidence            33333344555667888877555555556788888999975 577889999999999999999987652        145


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc
Q 018063          259 SVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGG  314 (361)
Q Consensus       259 ~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~  314 (361)
                      ..|.++.+++--.=+.-.....|....+.+ ..-.+.++..+.+.+.+..-.++.+
T Consensus       171 g~GElLL~lSL~mDGlTg~~Qdrira~yq~-~g~~MM~~~NlwStL~Lg~g~lfTG  225 (337)
T KOG1580|consen  171 GFGELLLILSLAMDGLTGSIQDRIRASYQR-TGTSMMFYTNLWSTLYLGAGLLFTG  225 (337)
T ss_pred             chHHHHHHHHHHhcccchhHHHHHHHhhcc-CchhhHHHHHHHHHHHhhhhheehh
Confidence            789999988876666666666776665532 3455667777777776554444444

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=95.54  E-value=0.95  Score=43.17  Aligned_cols=115  Identities=10%  Similarity=0.086  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH-HhcCcccHHH----HHHHHHHHHHhhhhcc
Q 018063          180 KTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHT----WFGVLISALGVGMLEC  253 (361)
Q Consensus       180 ~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii-~~~~Pv~v~lla~-ll~er~~~~~----~igl~la~~Gv~ll~~  253 (361)
                      +.+...++.|++-..++..++.+.++..++.+.=+ ..++-+.+.+++. +|+|--+..+    .+++++-++|+.+...
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~  122 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY  122 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence            55666777888888888999999998887776533 3566667777775 5899666433    3577777888877665


Q ss_pred             CCC---------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Q 018063          254 SGS---------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEI  299 (361)
Q Consensus       254 ~~~---------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~  299 (361)
                      .+.         +...|.+..+.+.+.|..|.+..|-..  .   |+.....-|.
T Consensus       123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~~--~---~~~~~~lPqa  172 (269)
T PF06800_consen  123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAFH--V---SGWSAFLPQA  172 (269)
T ss_pred             ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhcC--C---ChhHhHHHHH
Confidence            421         124699999999999999999876532  2   4565555444

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=95.52  E-value=0.74  Score=39.42  Aligned_cols=123  Identities=12%  Similarity=0.066  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHhccC-Ch---hhH-HHHHHHHHHHHHHHHHHHH
Q 018063          128 FLLNVITIVYASDIPILKAAEEIMH-PASFCAVRFVMSAIPFLPFVFWARD-DV---KTR-NAGIELGLWVSLGYFVEAL  201 (361)
Q Consensus       128 l~llla~llWG~~~~~~K~~~~~~~-P~~l~~~R~lia~liLl~~~~~~~~-~~---~~~-~~~~l~G~~~~~~~~~~~~  201 (361)
                      ++.+++..+-+....+--...+..+ |+.-+++-+..+.+++..+....++ +.   ++. ++..+-|++....-.+..+
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~   83 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNII   83 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHH
Confidence            3445555555555554444444555 9999999999999888776654332 21   111 1222233333322334456


Q ss_pred             HHhhchHHHHHHHH-HHHHHHHHHHHHH--h---cCcccHHHHHHHHHHHHHhhh
Q 018063          202 GLLTSDAGRASFIS-LFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGM  250 (361)
Q Consensus       202 al~~tsa~~aaii~-~~~Pv~v~lla~l--l---~er~~~~~~igl~la~~Gv~l  250 (361)
                      .++...++.+..+. .-+-+...++..+  +   +++++.+|++|+++.++|+.+
T Consensus        84 ~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   84 LVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL  138 (138)
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence            67777777765443 3444555556553  3   567789999999999999864

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.33  E-value=0.11  Score=50.40  Aligned_cols=117  Identities=15%  Similarity=0.163  Sum_probs=79.2

Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHH-HHHHHHHH
Q 018063          122 KKIRSIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWV-SLGYFVEA  200 (361)
Q Consensus       122 ~~~~g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~-~~~~~~~~  200 (361)
                      +...|.++.+++.++-+.+....|......+.   ...|---..   ..+     .+++.|+    .|+.. ..+....+
T Consensus         4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~---~~~~~~~~~---~~~-----l~~~~W~----~G~~~~~~g~~~~~   68 (300)
T PF05653_consen    4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR---GSLRAGSGG---RSY-----LRRPLWW----IGLLLMVLGEILNF   68 (300)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccchh---hHH-----HhhHHHH----HHHHHHhcchHHHH
Confidence            34678899999999999999999876433221   001100000   000     0112232    33322 34456667


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          201 LGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       201 ~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      .++.+.|++..+-+.++.-++..+++. ++|||++++.+.|.++.++|..+++.
T Consensus        69 ~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   69 VALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEE
Confidence            889999999998888888899999994 68999999999999999999987653

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.32  E-value=0.12  Score=41.20  Aligned_cols=53  Identities=17%  Similarity=0.322  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHH
Q 018063          191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLI  243 (361)
Q Consensus       191 ~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~-ll~er~~~~~~igl~l  243 (361)
                      .....+.++..++++.+.+.+ ++..++..+.+.+.+. +++|+++..|++|+.+
T Consensus        38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l   92 (93)
T PF00893_consen   38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred             HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence            344567788889999999988 5666788888888885 5899999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=94.78  E-value=1  Score=44.53  Aligned_cols=130  Identities=18%  Similarity=0.134  Sum_probs=72.4

Q ss_pred             chHHHHHHHHHHHHHHhhH-------HHHHHHh-ccCCHHHHHHHHHH---HHHHHHH-HHHH---hccCC------hh-
Q 018063          123 KIRSIFLLNVITIVYASDI-------PILKAAE-EIMHPASFCAVRFV---MSAIPFL-PFVF---WARDD------VK-  180 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~-------~~~K~~~-~~~~P~~l~~~R~l---ia~liLl-~~~~---~~~~~------~~-  180 (361)
                      ..||++.++++.+..+...       +..+... .+.++.....--+.   +++++.- .++.   +|+++      ++ 
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            4789998888888877666       4444322 24555544443333   5555443 2222   12111      11 


Q ss_pred             ---h-HH---HHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HH-HHHHHHHHHHHHHhcCccc------HHHHHHHHH
Q 018063          181 ---T-RN---AGIELGLWVSLGYFVEALGLLTSDAGRASF---IS-LFTVIVVPLFDGMLGAIIP------AHTWFGVLI  243 (361)
Q Consensus       181 ---~-~~---~~~l~G~~~~~~~~~~~~al~~tsa~~aai---i~-~~~Pv~v~lla~ll~er~~------~~~~igl~l  243 (361)
                         . ++   ...+.|+.-+.++.++.++-...+.+.+.+   +. ++..++..+.+.++||+.+      +.-++|+++
T Consensus       252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~lkE~K~a~~k~~~~l~~G~vl  331 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLVLKEWKGASRRPVRVLSLGCVV  331 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhhhhhccCCCccchhHHHHHHHH
Confidence               1 12   224556665666666666666654433333   33 5655777777777998766      334677777


Q ss_pred             HHHHhhhhc
Q 018063          244 SALGVGMLE  252 (361)
Q Consensus       244 a~~Gv~ll~  252 (361)
                      -++|..++.
T Consensus       332 iI~g~~lig  340 (345)
T PRK13499        332 IILAANIVG  340 (345)
T ss_pred             HHHHHHHHh
Confidence            777777654

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=94.48  E-value=1.8  Score=41.49  Aligned_cols=118  Identities=8%  Similarity=0.037  Sum_probs=82.3

Q ss_pred             HHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc---c-----CChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018063          134 TIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWA---R-----DDVKTRNAGIELGLWVSLGYFVEALGLLT  205 (361)
Q Consensus       134 ~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~---~-----~~~~~~~~~~l~G~~~~~~~~~~~~al~~  205 (361)
                      ++.||.-+..=|.  -.+|+.+-..+-.+.-..+-+.+.+.-   .     .....+......|........++..|-+.
T Consensus       157 a~sf~~Ygl~RK~--~~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~  234 (293)
T COG2962         157 ALSFGLYGLLRKK--LKVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKR  234 (293)
T ss_pred             HHHHHHHHHHHHh--cCCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence            4455555555555  245665555555444333333333221   1     12334556667788878888899999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhhhcc
Q 018063          206 SDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGMLEC  253 (361)
Q Consensus       206 tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~ll~~  253 (361)
                      .+-+..+++.+..|.+..+++.+ ++|.++..+.++.+.--.|+.+...
T Consensus       235 lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         235 LPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSI  283 (293)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999975 7899999999988888888776544

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.23  E-value=5.7  Score=38.49  Aligned_cols=192  Identities=12%  Similarity=0.094  Sum_probs=118.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHhcc---CChhhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 018063          152 HPASFCAVRFVMSAIPFLPFVFWAR---DDVKTRNAGIELGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM  228 (361)
Q Consensus       152 ~P~~l~~~R~lia~liLl~~~~~~~---~~~~~~~~~~l~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l  228 (361)
                      ++..+.+..-+.+.++-..++..++   ..++.|.....+++.....-.+.+.+++|.+=-.-.+-=+.=-+=++++..+
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L  129 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL  129 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence            5666777766666665544433322   1234455666777777666678889999976322222222222334455644


Q ss_pred             -hcCcccHHHHHHHHHHHHHhhhhccC--CC--------CCcHHHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHH
Q 018063          229 -LGAIIPAHTWFGVLISALGVGMLECS--GS--------PPSVGDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGY  297 (361)
Q Consensus       229 -l~er~~~~~~igl~la~~Gv~ll~~~--~~--------~~~~G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~  297 (361)
                       .++|.+..+.+...+--.|+.+....  ++        +...|.+++...-+.=++-+...+++-+++ +.++..+.++
T Consensus       130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~-k~s~~~mM~~  208 (327)
T KOG1581|consen  130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKY-KVSSLHMMFG  208 (327)
T ss_pred             HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccC-CccHhHHHHH
Confidence             68899988888888888888766432  11        235788888877777677777777777654 4678888888


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 018063          298 EICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGIFSTGIC  355 (361)
Q Consensus       298 ~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv~~T~la  355 (361)
                      ..++.++....-....+.+.       .+.++-    ..+++.+.-++.+...+++.-
T Consensus       209 vNLf~~i~~~~~li~qg~~~-------~av~F~----~~hp~~~~Di~l~s~~gavGQ  255 (327)
T KOG1581|consen  209 VNLFSAILNGTYLILQGHLL-------PAVSFI----KEHPDVAFDILLYSTCGAVGQ  255 (327)
T ss_pred             HHHHHHHHHHHhhhcCCCCc-------hHHHHH----HcChhHHHHHHHHHHhhhhhh
Confidence            88888887766543333221       111111    124667777777766665543

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=94.05  E-value=0.078  Score=42.84  Aligned_cols=72  Identities=13%  Similarity=0.268  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhhHHHHHHHHH
Q 018063          270 IFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFPWVPALYTGI  349 (361)
Q Consensus       270 l~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~llylgv  349 (361)
                      ++||.+.+..|+..++.   |+...+++.+..+++ .++.....+...               ....+...+..++++|+
T Consensus         1 ~~~a~~~~~~k~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~   61 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI---SPLSITFWRFLIAGI-LLILLLILGRKP---------------FKNLSPRQWLWLLFLGL   61 (126)
T ss_pred             ceeeeHHHHHHHHhccC---CHHHHHHHHHHHHHH-HHHHHHhhcccc---------------ccCCChhhhhhhhHhhc
Confidence            47899999999998886   789999999999887 555555444211               00124567888899999


Q ss_pred             HHHHHHHHhhc
Q 018063          350 FSTGICLWIEV  360 (361)
Q Consensus       350 ~~T~lay~lq~  360 (361)
                      +++++++.+..
T Consensus        62 ~~~~~~~~~~~   72 (126)
T PF00892_consen   62 LGTALAYLLYF   72 (126)
T ss_pred             cceehHHHHHH
Confidence            98888887653

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=92.26  E-value=0.086  Score=49.91  Aligned_cols=119  Identities=16%  Similarity=0.156  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHh-cc----CChhhHHHHHHHHHHHHHHHHHHHH
Q 018063          127 IFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFW-AR----DDVKTRNAGIELGLWVSLGYFVEAL  201 (361)
Q Consensus       127 ~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~-~~----~~~~~~~~~~l~G~~~~~~~~~~~~  201 (361)
                      ....+.+++.-+..++..|..-...+.+..+.+-.+++.+.-++.+.. ..    ...++|.....+|++.++++.+...
T Consensus       193 t~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm  272 (346)
T KOG4510|consen  193 TVAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTM  272 (346)
T ss_pred             hHHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHH
Confidence            344555566666778888877555555555555445544443333221 11    1345666666789998899999999


Q ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHH
Q 018063          202 GLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISA  245 (361)
Q Consensus       202 al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~  245 (361)
                      |+|.--++..+++.++..++..+.-. ++++-+++..|.|.++-+
T Consensus       273 ~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vv  317 (346)
T KOG4510|consen  273 GLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVV  317 (346)
T ss_pred             HhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeee
Confidence            99999999999999999999988885 579999999998876533

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.39  E-value=9.1  Score=33.33  Aligned_cols=126  Identities=10%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHhccC--Ch----hhHHHHHHHHHHHHHHHHH
Q 018063          126 SIFLLNVITIVYASDIPILKAAEEIM-HPASFCAVRFVMSAIPFLPFVFWARD--DV----KTRNAGIELGLWVSLGYFV  198 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~~~-~P~~l~~~R~lia~liLl~~~~~~~~--~~----~~~~~~~l~G~~~~~~~~~  198 (361)
                      ..+..+++..+-.....+--...... +|+.-.+.-++.+.+++..+.+.+.+  ..    +.-++...-| .+...|.+
T Consensus         6 ~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG-~lGa~~vt   84 (150)
T COG3238           6 YLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGG-LLGAIFVT   84 (150)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHcc-chhhhhhh
Confidence            34444555555444444433333444 59999999999999888777654321  11    1111222223 22222222


Q ss_pred             H-HHHHhhchHHH-HHHHHHHHHHHHHHHHHH--h---cCcccHHHHHHHHHHHHHhhhhc
Q 018063          199 E-ALGLLTSDAGR-ASFISLFTVIVVPLFDGM--L---GAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       199 ~-~~al~~tsa~~-aaii~~~~Pv~v~lla~l--l---~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      . ........++. ..++..-+-+...++..+  +   +++++..+++|+++.++|++++-
T Consensus        85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~  145 (150)
T COG3238          85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR  145 (150)
T ss_pred             hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence            1 12233333333 334445555666666644  3   45677999999999999965543

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=91.31  E-value=1.9  Score=36.45  Aligned_cols=56  Identities=20%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcc----CCCChHHHHHHHHHHHHHHHHHHHHHhccC
Q 018063          261 GDFLNFLSAIFFGIHMLRTERISRST----KKENFLPLLGYEICVVALLSTIWVLVGGWF  316 (361)
Q Consensus       261 G~ll~L~aal~~A~~~v~~rk~~~~~----~~~~~l~l~~~~~l~~al~~l~~~l~~~~~  316 (361)
                      |.++++++.++.|++.++.|+..++.    .+.++..+..+....+.+++++..++.|..
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~   60 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP   60 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67889999999999999999988773    356899999999999999999988887754

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=90.36  E-value=9.2  Score=37.66  Aligned_cols=155  Identities=13%  Similarity=0.088  Sum_probs=93.9

Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHh--cc---------CChhhHHHHHHHHH
Q 018063          123 KIRSIFLLNVITIVYASDIPILKAAEE-IMHPASFCAVRFVMSAIPFLPFVFW--AR---------DDVKTRNAGIELGL  190 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~~~~K~~~~-~~~P~~l~~~R~lia~liLl~~~~~--~~---------~~~~~~~~~~l~G~  190 (361)
                      -..|++...++.+.=|+.++-.|..-. ....++++.   .+-+-+++|+...  .-         .+...+....+.|+
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkvk~WsWEs~Wlv~---gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~   81 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKVKGWSWESYWLVQ---GIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV   81 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhcCCccHHHHHHHH---HHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence            367999999999999999999887543 344555442   2333334444332  11         12234445556666


Q ss_pred             HHHHHHHHHHHHHhhchHHHH-HHHHHHHHHHHHHHHHH--------hcCcccHHHHHHHHHHHHHhhhhccCC------
Q 018063          191 WVSLGYFVEALGLLTSDAGRA-SFISLFTVIVVPLFDGM--------LGAIIPAHTWFGVLISALGVGMLECSG------  255 (361)
Q Consensus       191 ~~~~~~~~~~~al~~tsa~~a-aii~~~~Pv~v~lla~l--------l~er~~~~~~igl~la~~Gv~ll~~~~------  255 (361)
                      +-.++-..|-.+++|...+.. ++...+.-++-.++-.+        +..+-....++|++++++|+.++-..|      
T Consensus        82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~  161 (344)
T PF06379_consen   82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE  161 (344)
T ss_pred             HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence            644444555567777655544 23333333333333222        223334678899999999999886532      


Q ss_pred             -------CCCcHHHHHHHHHHHHHHHHHHHHH
Q 018063          256 -------SPPSVGDFLNFLSAIFFGIHMLRTE  280 (361)
Q Consensus       256 -------~~~~~G~ll~L~aal~~A~~~v~~r  280 (361)
                             .++..|.+++++|.+.-|++.+-..
T Consensus       162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~  193 (344)
T PF06379_consen  162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLD  193 (344)
T ss_pred             hccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence                   1346899999999998888776554

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=90.14  E-value=0.81  Score=44.69  Aligned_cols=130  Identities=15%  Similarity=0.093  Sum_probs=89.1

Q ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHhc----cCCHHHHHHHHHHHHHHHHH-HHHHhccC-Ch-----hhH----HHHHH
Q 018063          123 KIRSIFLLNVITIVYASDIPILKAAEE----IMHPASFCAVRFVMSAIPFL-PFVFWARD-DV-----KTR----NAGIE  187 (361)
Q Consensus       123 ~~~g~l~llla~llWG~~~~~~K~~~~----~~~P~~l~~~R~lia~liLl-~~~~~~~~-~~-----~~~----~~~~l  187 (361)
                      +..|.+..+.+.+....--++.|..+.    .++++.+..+-.-++.+.++ |+...... ..     +.|    ....+
T Consensus       161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (316)
T KOG1441|consen  161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL  240 (316)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence            468999999999999999999998873    48999999888888888888 77554211 11     111    11122


Q ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhc
Q 018063          188 LGLWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLE  252 (361)
Q Consensus       188 ~G~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~  252 (361)
                      ..++.+..+...+..+.++++-.-.+....=-+++.+.++ +|+++++..+.+|.+++++|+.+=.
T Consensus       241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence            2333334445556777777776655554433334445554 4788889999999999999997643

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=89.38  E-value=5.6  Score=38.55  Aligned_cols=129  Identities=12%  Similarity=0.048  Sum_probs=90.0

Q ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHHhccC----------ChhhHHHHHHHH
Q 018063          122 KKIRSIFLLNVITIVYASDIPILKAAEE--IMHPASFCAVRFVMSAIPFLPFVFWARD----------DVKTRNAGIELG  189 (361)
Q Consensus       122 ~~~~g~l~llla~llWG~~~~~~K~~~~--~~~P~~l~~~R~lia~liLl~~~~~~~~----------~~~~~~~~~l~G  189 (361)
                      +...|++++..-.++=|......+.+..  .++++.+.+.-.+..++.=.......+.          .++-++..++..
T Consensus       169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s  248 (327)
T KOG1581|consen  169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS  248 (327)
T ss_pred             CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence            3467888887777776777766665555  5899999988888777665554443321          223355666777


Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhh
Q 018063          190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (361)
Q Consensus       190 ~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~l  250 (361)
                      .+...++.+.++-++.-.+-.-+.|+.+==++..+++. .++.+++..||+|+.+-|.|+.+
T Consensus       249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l  310 (327)
T KOG1581|consen  249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL  310 (327)
T ss_pred             HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence            77777777777767665444445555555677777775 58999999999999998888764

>COG2510 Predicted membrane protein [Function unknown]

Probab=88.97  E-value=3.7  Score=34.87  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCcchhhhhcccCChhh
Q 018063          261 GDFLNFLSAIFFGIHMLRTERISRSTKKENFLPLLGYEICVVALLSTIWVLVGGWFDSSQDFDQSPWTWTMLWDWMVTFP  340 (361)
Q Consensus       261 G~ll~L~aal~~A~~~v~~rk~~~~~~~~~~l~l~~~~~l~~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (361)
                      -.++++++|+++++..+..|--.++.   ||..-+..-.++..+.+..+.+..++++..              ...++..
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~~v---dp~~At~IRtiVi~~~l~~v~~~~g~~~~~--------------~~~~~k~   66 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLEGV---DPDFATTIRTIVILIFLLIVLLVTGNWQAG--------------GEIGPKS   66 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc---CccHHHHHHHHHHHHHHHHHHHhcCceecc--------------cccCcce
Confidence            35789999999999999887766665   667677777777777777777766654311              0135678


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 018063          341 WVPALYTGIFSTGICLWIE  359 (361)
Q Consensus       341 wl~llylgv~~T~lay~lq  359 (361)
                      |..++.-| +.++++..++
T Consensus        67 ~lflilSG-la~glswl~Y   84 (140)
T COG2510          67 WLFLILSG-LAGGLSWLLY   84 (140)
T ss_pred             ehhhhHHH-HHHHHHHHHH
Confidence            88888777 5666666554

>TIGR00803 nst UDP-galactose transporter

Probab=88.80  E-value=4.5  Score=36.82  Aligned_cols=61  Identities=18%  Similarity=0.222  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhh
Q 018063          190 LWVSLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGM  250 (361)
Q Consensus       190 ~~~~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~l  250 (361)
                      +....+..+..+-+++.++..-++...+.++++.+++. +++|+++..+++|+.+.+.|+.+
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            33344445566778899999999999999999999996 58999999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=88.57  E-value=1.5  Score=35.86  Aligned_cols=111  Identities=13%  Similarity=0.120  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHhhHHHHHHHhccCCHH------HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHH
Q 018063          128 FLLNVITIVYASDIPILKAAEEIMHPA------SFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEAL  201 (361)
Q Consensus       128 l~llla~llWG~~~~~~K~~~~~~~P~------~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~  201 (361)
                      ..++.++++||.+.+++|....+.+-.      ...++|-.....          .+++-+.. +++   +-.+-.+++.
T Consensus         6 ~~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~----------l~w~Y~iP-Fll---NqcgSaly~~   71 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLF----------LNWEYLIP-FLL---NQCGSALYYL   71 (125)
T ss_pred             HHHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHH----------HhHHHHHH-HHH---HHhhHHHHHH
Confidence            457788999999999999876543221      111111111000          01111111 111   1223345566


Q ss_pred             HHhhchHHHHH-HHHHHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhhhhc
Q 018063          202 GLLTSDAGRAS-FISLFTVIVVPLFDGMLGAIIP-AHTWFGVLISALGVGMLE  252 (361)
Q Consensus       202 al~~tsa~~aa-ii~~~~Pv~v~lla~ll~er~~-~~~~igl~la~~Gv~ll~  252 (361)
                      -+++++.+.+. +-.++.-.|+.+.+..++|+.+ ++.++|..+...|+.+.+
T Consensus        72 tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   72 TLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             HHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            67777665554 3345666788888888999987 677899999888887643

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=88.06  E-value=0.11  Score=48.60  Aligned_cols=154  Identities=12%  Similarity=0.101  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHhhHHHH-HHHhccCCHHHHHHHHHHHHHHHHHHHHH-hcc--CChhhHHHHHHHHHHHHHHHHHHHH
Q 018063          126 SIFLLNVITIVYASDIPIL-KAAEEIMHPASFCAVRFVMSAIPFLPFVF-WAR--DDVKTRNAGIELGLWVSLGYFVEAL  201 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~-K~~~~~~~P~~l~~~R~lia~liLl~~~~-~~~--~~~~~~~~~~l~G~~~~~~~~~~~~  201 (361)
                      +++..++-++.||+...+. |.   +=+|.+-... ..++++++....+ ..+  .+.+.+...++-|++-..++..++-
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lG-tT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfk   78 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLG-TTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFK   78 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhh-ccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhh
Confidence            4567788889999886554 43   2344433322 2344444433332 222  2344555666677776777888899


Q ss_pred             HHhhchHHHHHHH-HHHHHHHHHHHHHH-hcCcccHH----HHHHHHHHHHHhhhhccCCC---------CCcHHHHHHH
Q 018063          202 GLLTSDAGRASFI-SLFTVIVVPLFDGM-LGAIIPAH----TWFGVLISALGVGMLECSGS---------PPSVGDFLNF  266 (361)
Q Consensus       202 al~~tsa~~aaii-~~~~Pv~v~lla~l-l~er~~~~----~~igl~la~~Gv~ll~~~~~---------~~~~G~ll~L  266 (361)
                      +++++.++.+.=+ .+++-+-+.+++++ |+|--+..    ..+++++-++|+.+-...+.         +...|....+
T Consensus        79 a~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~  158 (288)
T COG4975          79 AIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILL  158 (288)
T ss_pred             heeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeee
Confidence            9999888887533 34555666666754 78855432    33566666777766554321         1346888888


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 018063          267 LSAIFFGIHMLRTERIS  283 (361)
Q Consensus       267 ~aal~~A~~~v~~rk~~  283 (361)
                      .+.+.|-.|.++.+...
T Consensus       159 iSt~GYv~yvvl~~~f~  175 (288)
T COG4975         159 ISTLGYVGYVVLFQLFD  175 (288)
T ss_pred             eeccceeeeEeeecccc
Confidence            89999999888776654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=86.19  E-value=16  Score=34.61  Aligned_cols=158  Identities=13%  Similarity=0.037  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 018063          126 SIFLLNVITIVYASDIPILKAAEEIMHPASFCAVRFVMSAIPFLPFVFWARDDVKTRNAGIELGLWVSLGYFVEALGLLT  205 (361)
Q Consensus       126 g~l~llla~llWG~~~~~~K~~~~~~~P~~l~~~R~lia~liLl~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~al~~  205 (361)
                      |++..+++++++|++++-+|.. +.-|++.+-++-.....+.-+.+...+. ..+-....++-|.+-..++.+-.-.++.
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~~gDg~~fQw~~~~~i~~~g~~v~~~~~-~p~f~p~amlgG~lW~~gN~~~vpii~~   78 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-DTGDGFFFQWVMCSGIFLVGLVVNLILG-FPPFYPWAMLGGALWATGNILVVPIIKT   78 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-cCCCcHHHHHHHHHHHHHHHHHHHHhcC-CCcceeHHHhhhhhhhcCceeehhHhhh
Confidence            4567889999999999999963 3457766655543322222222222222 2222334444555555556555666777


Q ss_pred             chHHHHHHHHHHHHHHHHHHH-HH--hc---Ccc--cHHHHHHHHHHHHHhhhhccC--C--------------------
Q 018063          206 SDAGRASFISLFTVIVVPLFD-GM--LG---AII--PAHTWFGVLISALGVGMLECS--G--------------------  255 (361)
Q Consensus       206 tsa~~aaii~~~~Pv~v~lla-~l--l~---er~--~~~~~igl~la~~Gv~ll~~~--~--------------------  255 (361)
                      ...+..-.+-+..-+++--.. .+  |+   |.+  +...++|+++.++|..+....  +                    
T Consensus        79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~  158 (254)
T PF07857_consen   79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE  158 (254)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence            777777666655444333222 22  32   222  357889999999998866431  0                    


Q ss_pred             ---C----------C-------CcHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 018063          256 ---S----------P-------PSVGDFLNFLSAIFFGIHMLRTERISRS  285 (361)
Q Consensus       256 ---~----------~-------~~~G~ll~L~aal~~A~~~v~~rk~~~~  285 (361)
                         .          +       -..|..+++++++.|+...+=...+.++
T Consensus       159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~  208 (254)
T PF07857_consen  159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH  208 (254)
T ss_pred             cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence               0          0       1368899999999999887666665554

The region concerned is approximately 280 residues long.

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=80.88  E-value=13  Score=34.94  Aligned_cols=126  Identities=10%  Similarity=0.008  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhcc--CCHHHHHHHHHHHHHHHHHHHHHhcc----------CChhhHHHHHHHHHHH
Q 018063          125 RSIFLLNVITIVYASDIPILKAAEEI--MHPASFCAVRFVMSAIPFLPFVFWAR----------DDVKTRNAGIELGLWV  192 (361)
Q Consensus       125 ~g~l~llla~llWG~~~~~~K~~~~~--~~P~~l~~~R~lia~liLl~~~~~~~----------~~~~~~~~~~l~G~~~  192 (361)
                      .|-++++++-.+=|.........-.+  -+.-.+.+.-.+-+.+.+..-++..+          +....+....++++..
T Consensus       172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s  251 (337)
T KOG1580|consen  172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS  251 (337)
T ss_pred             hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            45666666666666666654332221  12223333333444444332222111          1222345556677777


Q ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHhhh
Q 018063          193 SLGYFVEALGLLTSDAGRASFISLFTVIVVPLFDGM-LGAIIPAHTWFGVLISALGVGM  250 (361)
Q Consensus       193 ~~~~~~~~~al~~tsa~~aaii~~~~Pv~v~lla~l-l~er~~~~~~igl~la~~Gv~l  250 (361)
                      .+++.+.+.-+.+-++-..+++..+--+|+.+.+.+ ++..++.+||+|..+-|.|+.+
T Consensus       252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA  310 (337)
T ss_pred             HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence            777777777777777767777777778899999965 7889999999999999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.91
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	97.7

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.91  E-value=0.00011  Score=59.34  Aligned_cols=64  Identities=17%  Similarity=0.249  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063          191 WVSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (361)
Q Consensus       191 ~~~~~~~~~~~al~~tsa~~aaii-~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~  254 (361)
                      .....+.++..++++.+.+.+.-+ .++.|+++.++++ +++|++++.+++|+.+.++|++++...
T Consensus        39 ~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~  104 (110)
T 3b5d_A           39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (110)
T ss_pred             HHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            345667788899999999999777 7999999999996 589999999999999999999988654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=97.70  E-value=0.0001  Score=62.00  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHhhhhccC
Q 018063          192 VSLGYFVEALGLLTSDAGRASFI-SLFTVIVVPLFDG-MLGAIIPAHTWFGVLISALGVGMLECS  254 (361)
Q Consensus       192 ~~~~~~~~~~al~~tsa~~aaii-~~~~Pv~v~lla~-ll~er~~~~~~igl~la~~Gv~ll~~~  254 (361)
                      ....|.++..++++.+++.+..+ .++.|+++.++++ +++|+++..+++|+++.++|++++...
T Consensus        40 ~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~  104 (137)
T 2i68_A           40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL  104 (137)
T ss_dssp             HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            44668888999999999999877 8999999999996 589999999999999999999988543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00