Citrus Sinensis ID: 018079

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKWSP
Secondary Structure (PSIPRED)
ccEEEcccccccccccccccccccccccccEEEcccccccccccccccccEEEccccccccHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHccccccccccccccccHHHHHHHcccccccccEEEEEEEcccccccHHHccccccEEEEcccccccccccccccccccEEEccccccEEEcccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEcccHHHHHHHccccccccccccccccEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccHHcccccccccccccEcEEEEEccccccccHccccccccEEEccccccccHHHHHHHcccccccccEEEEEEcccccccccccccccccccHHHHHcccccccHHHHHHHHHccccccccEEEEEcccccccccHHccccccEEEEEccccccccccccccccccEEEEccccccccccHHHccccHHHHcccccccccccccccccccEEEEcccHcHHccccccccHHHccccccccEEEEccccccccccccccccccccEEEEcccccccccccccHHHHcccccccEEEEccccccccccccccccccccEEEEcccHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mrsllnfgtnslkympigiSKLTSLRRLdkfvvgggvdgsntgrlqlrgecsieglcnvshvdeAERLQLSNKKNLLRLHLQfggkdedwrneeeeeeegevvdgedeegrrknEKDKQLLEAlqpplnveELWIIFYGGNIFPKWLTSLANLRELNlslcfncehlpqlgklpleklQLKNLKSVKRVGNeflgieessedgpsssssspsviafpklksleIDGMKELEEWNYRITRkenisimprlsslevsscnklkalPDYLLQMTVLQNLRIFFCenmeelpiledhrttdiprlsslrigycpklkvlpdcllrttTLQKltiwgcpllenryregkgedwhkishiphikwsp
Flexible Loop (DISEMBL)
mrsllnfgtnslkympiGISKLTSLRRLDKFVvgggvdgsntgrlqlRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQfggkdedwrneeeeeeegevvdgedeegrrknekdkqlLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGieessedgpsssssspsviAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEelpiledhrttdiprlsslrigycpklKVLPDCLLRTTtlqkltiwgcpllENRYRegkgedwhkishiphikwsp
Low Complexity Region (SEG)
MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNeeeeeeegevvdgedeegRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIeessedgpsssssspsVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKWSP
Disordered region (IsUnstruct)
****LNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF******************************************PPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFL********************AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHI****
Disordered Region (DISOPRED)
MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVV***********EKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEESSED***********IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKWSP
Disordered Region (DISEMBL)
MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDE***************************KDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGI****************VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKWSP
Disordered Region (DISPRO)
MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKWSP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKWSP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q7XBQ9	970	Disease resistance protei	N/A	no	0.894	0.332	0.315	3e-28
Q7XA40	992	Putative disease resistan	N/A	no	0.847	0.308	0.308	9e-25
Q7XA39	988	Putative disease resistan	N/A	no	0.864	0.315	0.284	2e-21
Q7XA42	979	Putative disease resistan	N/A	no	0.905	0.334	0.286	1e-19
Q9LRR4	1054	Putative disease resistan	yes	no	0.822	0.281	0.276	3e-14
Q9LRR5	1424	Putative disease resistan	no	no	0.631	0.160	0.294	3e-12
P0DI18	1049	Probable disease resistan	no	no	0.349	0.120	0.364	5e-09
P0DI17	1049	Probable disease resistan	no	no	0.349	0.120	0.364	5e-09
Q9LVT1	623	Putative disease resistan	no	no	0.445	0.258	0.278	3e-08
Q9LZ25	811	Probable disease resistan	no	no	0.304	0.135	0.308	7e-08

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 127/403 (31%), Positives = 172/403 (42%), Gaps = 80/403 (19%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVG--GGVDGSNTGRLQLRGECSIEGLCN 58
           +R+LL  G+ SL  MP  I  LT L+ L +FVVG   G      G L L G   I  L  
Sbjct: 598 LRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVVGRKKGYQLGELGNLNLYGSIKISHLER 657

Query: 59  VSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDK 118
           V +  +A+   LS K NL  L +        W N      E E V               
Sbjct: 658 VKNDKDAKEANLSAKGNLHSLSM-------SWNNFGPHIYESEEV--------------- 695

Query: 119 QLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKLP-L 175
           ++LEAL+P  N+  L I  + G   P+W+  + L N+  + +S   NC  LP  G LP L
Sbjct: 696 KVLEALKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCL 755

Query: 176 EKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEI------DGM-- 227
           E L+L    +          +E   E      S  P+ I FP L+ L+I       G+  
Sbjct: 756 ESLELHWGSA---------DVEYVEEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLK 806

Query: 228 KELEEW-------------------------NYRITRKENISIMP--------RLSSLEV 254
           KE EE                          + RI   +  +  P         L  L +
Sbjct: 807 KEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLRICYNKVATSFPEEMFKNLANLKYLTI 866

Query: 255 SSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKV 314
           S CN LK LP  L  +  L++L+I  C  +E LP   +     +  L+ L + +C  LK 
Sbjct: 867 SRCNNLKELPTSLASLNALKSLKIQLCCALESLP---EEGLEGLSSLTELFVEHCNMLKC 923

Query: 315 LPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHI 357
           LP+ L   TTL  L I GCP L  R  +G GEDWHKISHIP++
Sbjct: 924 LPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNV 966

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  114 bits (286), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 127/412 (30%), Positives = 171/412 (41%), Gaps = 106/412 (25%)

Query: 12  LKYMPIGISKLTSLRRLDKFVVG--GGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQ 69
           L  MP  I  LT L+ L  FVVG   G        L LRG  SI  L  V +  EA+   
Sbjct: 617 LTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLNLRGAISITHLERVKNDMEAKEAN 676

Query: 70  LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLN 129
           LS K NL  L + +     D  N  E EE                    ++LEAL+P  N
Sbjct: 677 LSAKANLHSLSMSW-----DRPNRYESEE-------------------VKVLEALKPHPN 712

Query: 130 VEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLK----- 181
           ++ L II + G   P W+  + L N+  + +S C NC  LP  G+LP LE L+L+     
Sbjct: 713 LKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQDGSVE 772

Query: 182 ---------------------------NLKSVKRV--GNEFLGIEESS-EDGPSSSSSSP 211
                                      NLK ++R+    +F  +EE    D P       
Sbjct: 773 VEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCP------- 825

Query: 212 SVIAFPKLKSLEIDGMKELEEW------------------------NYRITR--KENISI 245
            +  FP L S     +K+LE W                        N+ +T   +E    
Sbjct: 826 -MFVFPTLSS-----VKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKN 879

Query: 246 MPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLR 305
           +  L  L VS    LK LP  L  +  L+ L I +C  +E LP   +     +  L+ L 
Sbjct: 880 LENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLP---EEGLEGLSSLTELF 936

Query: 306 IGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHI 357
           + +C  LK LP+ L   TTL  L I GCP L  R  +G GEDWHKISHIP++
Sbjct: 937 VEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNV 988

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 170/411 (41%), Gaps = 99/411 (24%)

Query: 12  LKYMPIGISKLTSLRRLDKFVVGG--GVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQ 69
           L   P  I  LT L+ L  F+VG   G        L L G  SI  L  V +  +AE   
Sbjct: 609 LTSTPPRIGLLTCLKTLGFFIVGSKKGYQLGELKNLNLCGSISITHLERVKNDTDAEA-N 667

Query: 70  LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLN 129
           LS K NL  L +        W N           DG +    R   K+ ++LEAL+P  N
Sbjct: 668 LSAKANLQSLSMS-------WDN-----------DGPN----RYESKEVKVLEALKPHPN 705

Query: 130 VEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSV 186
           ++ L II +GG  FP W+  + L  +  + +  C NC  LP  G+LP LE L+L+N  + 
Sbjct: 706 LKYLEIIAFGGFRFPSWINHSVLEKVISVRIKSCKNCLCLPPFGELPCLENLELQNGSA- 764

Query: 187 KRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEI---------------------- 224
                    +E   ED   S  S+    +FP LK L I                      
Sbjct: 765 --------EVEYVEEDDVHSRFSTRR--SFPSLKKLRIWFFRSLKGLMKEEGEEKFPMLE 814

Query: 225 ---------------DGMKELEEWNYRITRK-ENISIMPRLSSLEVSSCNKLKALPDYLL 268
                            +K+LE      TR   +IS +  L+SL + +  +  +LP+ + 
Sbjct: 815 EMAILYCPLFVFPTLSSVKKLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMF 874

Query: 269 -QMTVLQNLRIFFCENMEELPI---------------------LEDHRTTDIPRLSSLRI 306
             +T L+ L  F  +N+++LP                        +     +  L+ L +
Sbjct: 875 TSLTNLEFLSFFDFKNLKDLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFV 934

Query: 307 GYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHI 357
            YC  LK LP+ L   T L  L + GCP +E R  +  GEDWHKI+HIP++
Sbjct: 935 KYCKMLKCLPEGLQHLTALTNLGVSGCPEVEKRCDKEIGEDWHKIAHIPNL 985

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 117/408 (28%), Positives = 169/408 (41%), Gaps = 81/408 (19%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ---LRGECSIEGLC 57
           +R+LL  G  SL   P  I  LT L+ L  FV+G    G   G L+   L G  SI  L 
Sbjct: 598 LRNLLLDGC-SLTSTPPRIGLLTCLKSLSCFVIGKR-KGHQLGELKNLNLYGSISITKLD 655

Query: 58  NVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKD 117
            V    +A+   LS K NL  L L +                   +DG       K+  D
Sbjct: 656 RVKKDTDAKEANLSAKANLHSLCLSWD------------------LDG-------KHRYD 690

Query: 118 KQLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKLP- 174
            ++LEAL+P  N++ L I  +GG   P W+  + L N+  + +  C NC  LP  G+LP 
Sbjct: 691 SEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPC 750

Query: 175 LEKLQL------------------------------KNLKSVKRV-GNEFLGIEESSEDG 203
           LE L+L                               NLK + ++ G +   + E     
Sbjct: 751 LESLELHTGSADVEYVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFY 810

Query: 204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENIS--------------IMPRL 249
                  P++ +   LK +  D        N R     +IS               +  L
Sbjct: 811 WCPMFVIPTLSSVKTLKVIVTDATVLRSISNLRALTSLDISDNVEATSLPEEMFKSLANL 870

Query: 250 SSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC 309
             L++S    LK LP  L  +  L++L+  FC+ +E LP   +     +  L+ L +  C
Sbjct: 871 KYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLP---EEGVKGLTSLTELSVSNC 927

Query: 310 PKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHI 357
             LK LP+ L   T L  LTI  CP++  R   G GEDWHKI+HIP++
Sbjct: 928 MMLKCLPEGLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIAHIPYL 975

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 147/343 (42%), Gaps = 46/343 (13%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRL----QLRGECSIEGL 56
           +R L   GT  L+ MP    +L SL+ L  F V    DGS    L     L G+  I  L
Sbjct: 651 LRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSAS-DGSRISELGGLHDLHGKLKIVEL 708

Query: 57  CNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEK 116
             V  V +A    L++KK+L  +       D  WR              E+     + + 
Sbjct: 709 QRVVDVADAAEANLNSKKHLREI-------DFVWRTGSS--------SSENNTNPHRTQN 753

Query: 117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLT--SLANLRELNLSLCFNCEHLPQLGKLP 174
           + ++ E L+P  ++E+L I  Y G  FP WL+  S + +  + L  C  C  LP LG+LP
Sbjct: 754 EAEVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLP 813

Query: 175 -LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW 233
            L++L +  +  ++ +G +F      S+         P    F  L++L  D + + +EW
Sbjct: 814 CLKELHISGMVGLQSIGRKFYF----SDQQLRDQDQQP----FRSLETLRFDNLPDWQEW 865

Query: 234 -NYRITRKENISIMPRLSSLEVSSCNKLK-ALPDYLLQMTVLQNLRIFFCENMEELPILE 291
            + R+TR +   + P L  L +  C +L   LP +L     L +L I+ C  ++  P   
Sbjct: 866 LDVRVTRGD---LFPSLKKLFILRCPELTGTLPTFL---PSLISLHIYKCGLLDFQP--- 916

Query: 292 DHRTTDIPRLSSLRI-GYCPKLKVLPDCLLRTTTLQKLTIWGC 333
           DH       L +L I   C  L   P  L     L KL +  C
Sbjct: 917 DHHEYSYRNLQTLSIKSSCDTLVKFP--LNHFANLDKLEVDQC 957

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 115/265 (43%), Gaps = 37/265 (13%)

Query: 4   LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ----LRGECSIEGLCNV 59
           LL+     L  MP GI KL SL++L  FV+G  + G+    L+    LRG   I  L NV
Sbjct: 647 LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGR-LSGAGLHELKELSHLRGTLRISELQNV 705

Query: 60  SHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQ 119
           +   EA+   L  K  L  L L++  K   +            V G            K+
Sbjct: 706 AFASEAKDAGLKRKPFLDGLILKWTVKGSGF------------VPGS---FNALACDQKE 750

Query: 120 LLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKLP-LE 176
           +L  L+P  +++   I  Y G  FPKWL  +S   +  + LS C  C  LP +G+LP L+
Sbjct: 751 VLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLK 810

Query: 177 KLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYR 236
            L ++    +++VG +F   E +S   P           F  L+ L+  GM   +EW   
Sbjct: 811 YLSIEKFNILQKVGLDFFFGENNSRGVP-----------FQSLQILKFYGMPRWDEW--- 856

Query: 237 ITRKENISIMPRLSSLEVSSCNKLK 261
           I  +    I P L  L +  C  L+
Sbjct: 857 ICPELEDGIFPCLQKLIIQRCPSLR 881

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI18|DRL45_ARATH Probable disease resistance protein RDL6 OS=Arabidopsis thaliana GN=RDL6 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 22/148 (14%)

Query: 215  AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQ 274
             FP+L  L++  +  LEEW       E+ S MP+L +LE+  C KLK LP+   Q+  L+
Sbjct: 920  GFPQLHKLKLSELDGLEEWIV-----EDGS-MPQLHTLEIRRCPKLKKLPNGFPQLQNLE 973

Query: 275  NLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTI---W 331
                       E  I+ED     +P L +LRI  CPKLK LPD L    +L+ LT+   W
Sbjct: 974  LNE----LEEWEEWIVED---GSMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTVPKRW 1026

Query: 332  GCPLLENRYREGKGEDWHKISHIPHIKW 359
                 + R  +G GED++K+ HIP +++
Sbjct: 1027 -----KKRLSKG-GEDYYKVQHIPSVEF 1048

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DI17|DRL11_ARATH Probable disease resistance protein RF9 OS=Arabidopsis thaliana GN=RF9 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 79/148 (53%), Gaps = 22/148 (14%)

Query: 215  AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQ 274
             FP+L  L++  +  LEEW       E+ S MP+L +LE+  C KLK LP+   Q+  L+
Sbjct: 920  GFPQLHKLKLSELDGLEEWIV-----EDGS-MPQLHTLEIRRCPKLKKLPNGFPQLQNLE 973

Query: 275  NLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTI---W 331
                       E  I+ED     +P L +LRI  CPKLK LPD L    +L+ LT+   W
Sbjct: 974  LNE----LEEWEEWIVED---GSMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTVPKRW 1026

Query: 332  GCPLLENRYREGKGEDWHKISHIPHIKW 359
                 + R  +G GED++K+ HIP +++
Sbjct: 1027 -----KKRLSKG-GEDYYKVQHIPSVEF 1048

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280 OS=Arabidopsis thaliana GN=At5g47280 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 29/190 (15%)

Query: 148 TSLANLRELNLSLCFNCEHLPQLGK--LPLEKLQLKNLKSVKRVGNEFLGIEESSEDGPS 205
           TSL NLR L L       H+P+L    +PL+ L  K    + ++ N F   ++++ D   
Sbjct: 409 TSLTNLRSLWLERV----HVPELSSSMIPLKNLH-KLYLIICKINNSF---DQTAIDIAQ 460

Query: 206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD 265
                     FPKL  + ID   +L E          I  +  L+S+ +++C  +K LP 
Sbjct: 461 ---------IFPKLTDITIDYCDDLAEL------PSTICGITSLNSISITNCPNIKELPK 505

Query: 266 YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTL 325
            + ++  LQ LR++ C  ++ LP+       ++PRL  + I +C  L  LP+ +    TL
Sbjct: 506 NISKLQALQLLRLYACPELKSLPV----EICELPRLVYVDISHCLSLSSLPEKIGNVRTL 561

Query: 326 QKLTIWGCPL 335
           +K+ +  C L
Sbjct: 562 EKIDMRECSL 571

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ25|DRL30_ARATH Probable disease resistance protein At5g04720 OS=Arabidopsis thaliana GN=At5g04720 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 10/120 (8%)

Query: 216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN 275
           FPKL  L ID   +L E          I  +  L+S+ +++C ++K LP  L ++  LQ 
Sbjct: 650 FPKLSDLTIDHCDDLLEL------PSTICGITSLNSISITNCPRIKELPKNLSKLKALQL 703

Query: 276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335
           LR++ C  +  LP+       ++PRL  + I  C  L  LP+ + +  TL+K+    C L
Sbjct: 704 LRLYACHELNSLPV----EICELPRLKYVDISQCVSLSSLPEKIGKVKTLEKIDTRECSL 759

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
359482792	922	PREDICTED: putative disease resistance p	0.725	0.284	0.369	2e-37
359482790	923	PREDICTED: putative disease resistance p	0.728	0.284	0.350	4e-36
255549784	786	leucine-rich repeat containing protein,	0.759	0.348	0.339	1e-35
224134406	987	cc-nbs-lrr resistance protein [Populus t	0.778	0.284	0.356	3e-33
147825450	927	hypothetical protein VITISV_000086 [Viti	0.728	0.283	0.353	5e-33
224122700	799	nbs-lrr resistance protein [Populus tric	0.739	0.334	0.331	9e-33
359482784	919	PREDICTED: putative disease resistance p	0.717	0.281	0.361	1e-32
359482769	904	PREDICTED: putative disease resistance p	0.722	0.288	0.372	2e-32
147772835	920	hypothetical protein VITISV_006248 [Viti	0.720	0.282	0.355	2e-32
224130338	906	nbs-lrr resistance protein [Populus tric	0.675	0.269	0.384	2e-32

>gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 136/368 (36%), Positives = 175/368 (47%), Gaps = 106/368 (28%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGG-GVDGSNTGRLQ----LRGECSIEG 55
           +R L N+ T  LK +P GI +L+SL+ LD F+V   G D    G L+    LRG  SI+G
Sbjct: 649 LRHLENYNTR-LKGLPKGIGRLSSLQTLDVFIVSSHGNDECQIGDLRNLNNLRGRLSIQG 707

Query: 56  LCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNE 115
           L  V    EAE+ +L NK  L RL L+FGG            EEG               
Sbjct: 708 LDEVKDAGEAEKAELKNKVYLQRLELKFGG------------EEG--------------- 740

Query: 116 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKL 173
             K + EALQP  N++ L I  YG   +P W+  +SLA L+ L+L  C  C  LP LG+L
Sbjct: 741 -TKGVAEALQPHPNLKSLDIFNYGDREWPNWMMGSSLAQLKILHLRFCIRCPCLPPLGQL 799

Query: 174 P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232
           P LE+L + N+  V+ +G+EFLG         SSS+       FPKLK L I  MKEL++
Sbjct: 800 PILEELGILNMHGVQYIGSEFLG---------SSST------VFPKLKKLRISNMKELKQ 844

Query: 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED 292
           W   I  KE  SIMP L+ L + +C KL+ LPD++LQ T LQ L I +       PILE 
Sbjct: 845 WE--IKEKEERSIMPCLNDLTMLACPKLEGLPDHMLQRTPLQKLYIKYS------PILER 896

Query: 293 HRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKIS 352
               DI                                              GED HKIS
Sbjct: 897 RYRKDI----------------------------------------------GEDGHKIS 910

Query: 353 HIPHIKWS 360
           HIP +K+S
Sbjct: 911 HIPEVKYS 918

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 129/368 (35%), Positives = 176/368 (47%), Gaps = 105/368 (28%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGG-GVDGSNTGRLQ----LRGECSIEG 55
           +R L N+  + L+ +P GI +L+SL+ LD F+V   G D      L+    LRG  SI+G
Sbjct: 651 LRHLENYDADDLQGLPKGIGRLSSLQTLDVFIVSSHGNDECQIEDLRNLNNLRGRLSIQG 710

Query: 56  LCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNE 115
           L  V    EAE+ +L N+ +L RL L+FGG                      EEG     
Sbjct: 711 LDEVKDAGEAEKAELQNRVHLQRLTLEFGG----------------------EEG----- 743

Query: 116 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKL 173
             K + EALQP  N++ L II YG   +P W+  +SLA L+ L+L  C  C  LP LG+L
Sbjct: 744 -TKGVAEALQPHPNLKFLCIIRYGDREWPNWMMGSSLAQLKILHLRFCIRCPCLPPLGQL 802

Query: 174 P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232
           P LE+L +  +  +K +G+EFLG           SSS+     FPKLK L I G+ EL++
Sbjct: 803 PVLEELGICFMYGLKYIGSEFLG-----------SSST----VFPKLKGLYIYGLDELKQ 847

Query: 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED 292
           W   I  KE  SIMP L++L    C KL+ LPD++LQ   LQ L      N++  P+LE 
Sbjct: 848 WE--IKEKEERSIMPCLNALRAQHCPKLEGLPDHVLQRAPLQKL------NIKYSPVLE- 898

Query: 293 HRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKIS 352
                                                         RYR+  GED HKIS
Sbjct: 899 ---------------------------------------------RRYRKDIGEDGHKIS 913

Query: 353 HIPHIKWS 360
           HIP +++S
Sbjct: 914 HIPEVEYS 921

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549784|ref|XP_002515943.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223544848|gb|EEF46363.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/371 (33%), Positives = 172/371 (46%), Gaps = 97/371 (26%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVG-GGVDGSNTGRLQ----LRGECSIEG 55
           +R L N G   +  +P GISKLT LR L++F +G    +  N G L+    L+G   I G
Sbjct: 458 LRHLHNGGFEGV--LPKGISKLTCLRSLNRFSIGQNNQEACNLGDLKNLNHLQGCLCIMG 515

Query: 56  LCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNE 115
           L  V+ V EA++ +L  K  + RL L+FG  D +WR   ++E                  
Sbjct: 516 LEIVADVGEAKQAELRKKTEVTRLELRFGKGDAEWRKHHDDE------------------ 557

Query: 116 KDKQLLEALQPPLNVEELWIIFYGG-NIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP 174
               +L AL+P   VEEL I  Y G  +FP W+  L+NL+ + L+ C  CEHLP LGKLP
Sbjct: 558 ----ILLALEPSPYVEELGIYDYQGRTVFPSWMIFLSNLKTVILTNCKTCEHLPPLGKLP 613

Query: 175 -LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW 233
            LE L++  +  V++ G EFLG+E SS             IAFPKL +L    M+  E W
Sbjct: 614 FLENLRIWGMDGVQKAGLEFLGLESSSSSSSG--------IAFPKLINLRFMRMRNWEVW 665

Query: 234 NYRITR------KENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEEL 287
                R         I+IMP+L SL  + C+KLKA+PD  L+   LQ L           
Sbjct: 666 ADDFIRMGDEEDSTKITIMPQLRSLSFAWCSKLKAVPDQFLRKATLQEL----------- 714

Query: 288 PILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGED 347
                                                    T+   P L+  Y++G G+D
Sbjct: 715 -----------------------------------------TLTCSPELKRAYQKGIGQD 733

Query: 348 WHKISHIPHIK 358
           WHKISHIP+IK
Sbjct: 734 WHKISHIPNIK 744

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134406|ref|XP_002321815.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222868811|gb|EEF05942.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 174/373 (46%), Gaps = 92/373 (24%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGS---NTGRL----QLRGECSI 53
           +R L  FG+  + ++P GI +LTSLR L  F+V GG   S   N G L     LRG   I
Sbjct: 679 LRHLEIFGSG-VAFLPRGIEELTSLRTLTNFIVSGGGGQSGAANLGELGNLSHLRGTLWI 737

Query: 54  EGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRK 113
           E L NV  V+EA + ++  KK L+ L+L F   + D R +E                   
Sbjct: 738 EKLLNVRDVNEAVKAEIKKKKYLIGLYLLFNRDETDLRVDE------------------- 778

Query: 114 NEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKL 173
                 L+EALQPP N++ L I  + G + PKW+ SL  LR L++S C + E LP  G+L
Sbjct: 779 ----NALVEALQPPSNLQVLCISEFRGTLLPKWIMSLTKLRGLDISHCGSFEVLPPFGRL 834

Query: 174 P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSS---PSVIAFPKLKSLEIDGMKE 229
           P LEKL++        VG   LG   +  +G S    +     V AFPKLK L I  M+E
Sbjct: 835 PYLEKLKIGVKTRKLDVGFLGLGPVNNGSEGISKKGENGEMAPVSAFPKLKELFIWKMEE 894

Query: 230 LEEWN---YRITRKEN-ISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME 285
           LE W+     +  K+   +IMP+L  LEV  C KLKALPDY+L                 
Sbjct: 895 LEGWDGIGMGLGEKDTRTAIMPQLRELEVKGCPKLKALPDYVLTA--------------- 939

Query: 286 ELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKG 345
             P++E            LR+  C                        PLL  RY E KG
Sbjct: 940 --PLVE------------LRMNEC------------------------PLLSERYEEEKG 961

Query: 346 EDWHKISHIPHIK 358
           EDWHKISHI  I+
Sbjct: 962 EDWHKISHISEIE 974

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147825450|emb|CAN71072.1| hypothetical protein VITISV_000086 [Vitis vinifera]

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 130/368 (35%), Positives = 166/368 (45%), Gaps = 105/368 (28%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGG-GVDGSNTGRLQ----LRGECSIEG 55
           +R L N  T SLK +P GI +L+SL+ LD F+V   G D    G L+    LRG  SI+ 
Sbjct: 655 LRHLENCNTGSLKGLPKGIGRLSSLQTLDVFIVSSHGNDECQIGDLRNLNNLRGGLSIQR 714

Query: 56  LCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNE 115
           L  V    EAE+ +L N+ +   L L+FG                            K E
Sbjct: 715 LDEVKDAGEAEKAELKNRVHFQYLTLEFG----------------------------KKE 746

Query: 116 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKL 173
             K + EALQP  N++ L I  YG   +P W+  +SLA L+ L +  C  C  LP LG+L
Sbjct: 747 GTKGVAEALQPHPNLKSLDIFNYGDREWPNWMMGSSLAQLKILEIGNCRRCPCLPLLGQL 806

Query: 174 P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232
           P LEKL +  +  VK +G+EFLG         SSS+       FPKLK L I  M EL++
Sbjct: 807 PVLEKLDIWGMDGVKYIGSEFLG---------SSST------VFPKLKELNISRMDELKQ 851

Query: 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED 292
           W   I  KE  SIMP L+ L    C KL+ LPD++LQ T LQ L I       + PILE 
Sbjct: 852 WE--IKGKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYII------DSPILER 903

Query: 293 HRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKIS 352
               DI                                              GED HKIS
Sbjct: 904 RYRKDI----------------------------------------------GEDRHKIS 917

Query: 353 HIPHIKWS 360
           HIP +K+S
Sbjct: 918 HIPEVKYS 925

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122700|ref|XP_002318904.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222859577|gb|EEE97124.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 123/371 (33%), Positives = 171/371 (46%), Gaps = 104/371 (28%)

Query: 5   LNFGTNSLKYMPIGISKLTSLRRLDKFVV-GGGVDGSNTGRLQ-------LRGECSIEGL 56
           L    + + ++P GI ++  LR L+ F+V GGG + S    L+       + G   I  L
Sbjct: 511 LRINGSGVDFIPKGIERIACLRTLNVFIVCGGGENESKAANLRELKNLNHIGGSLGIRNL 570

Query: 57  CNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEK 116
            + S   EA   QL NKK LLRL L F     D+                       N++
Sbjct: 571 QDASDAAEA---QLKNKKRLLRLELDF-----DY-----------------------NQE 599

Query: 117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-L 175
              L+EAL+PP +++ L I  YGG   P W+ +L  L+EL LS C   E +  LG+LP L
Sbjct: 600 SGILIEALRPPSDLKYLTISRYGGLELPSWMMTLTRLQELILSDCTKLEVMRPLGRLPNL 659

Query: 176 EKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN- 234
           E L L++LK V+R+   FLGIE+  E+   +      V AFPKLK+L I  ++E+EEW+ 
Sbjct: 660 ESLVLRSLK-VRRLDAGFLGIEK-DENASINEGEIARVTAFPKLKTLWIGNLEEVEEWDG 717

Query: 235 -------YRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEEL 287
                    +     ISIMP+L  L + +C  L+ALPDY+L                   
Sbjct: 718 IERRVGEEDVNTTSIISIMPQLRWLTILNCPLLRALPDYVLA------------------ 759

Query: 288 PILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRY-REGKGE 346
                         + LR+                     L IWGCP+L  RY +E  GE
Sbjct: 760 --------------APLRV---------------------LDIWGCPILRKRYGKEEMGE 784

Query: 347 DWHKISHIPHI 357
           DW KISHIP+I
Sbjct: 785 DWQKISHIPNI 795

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 132/365 (36%), Positives = 169/365 (46%), Gaps = 106/365 (29%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGG-GVDGSNTGRLQ----LRGECSIEG 55
           +R L N+ T SLK +P GI +L+SL+ LD F+V   G D    G L+    LRG  SI+G
Sbjct: 650 LRHLENY-TRSLKGLPKGIGRLSSLQTLDVFIVSSHGNDECQIGDLRNLNNLRGGLSIQG 708

Query: 56  LCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNE 115
           L  V    EAE+ +L N+ +L RL L FGG                      EEG     
Sbjct: 709 LDEVKDAGEAEKAELKNRVSLHRLALVFGG----------------------EEG----- 741

Query: 116 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKL 173
             K + EALQP  N++ L I  YG   +P W+  +SLA L+ L +  C  C  LP LG+L
Sbjct: 742 -TKGVAEALQPHPNLKSLCIYGYGDREWPNWMMGSSLAQLKILEIGNCRRCPCLPPLGQL 800

Query: 174 P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232
           P LEKL +  +  V  +G+EFLG           SSS+     FPKLK L I G+ EL++
Sbjct: 801 PVLEKLVIWKMYGVIYIGSEFLG-----------SSST----VFPKLKELRIFGLDELKQ 845

Query: 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED 292
           W   I  KE  SIMP L+ L    C KL+ LPD++LQ T LQ L I      E  PIL  
Sbjct: 846 WE--IKEKEERSIMPCLNHLRTEFCPKLEGLPDHVLQRTPLQKLYI------EGSPIL-- 895

Query: 293 HRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKIS 352
                                                       + RY +  GED HKIS
Sbjct: 896 --------------------------------------------KRRYGKDIGEDRHKIS 911

Query: 353 HIPHI 357
           HIP +
Sbjct: 912 HIPEV 916

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/322 (37%), Positives = 165/322 (51%), Gaps = 61/322 (18%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGG-GVDGSNTGRLQ----LRGECSIEG 55
           +R L N+ T SLK +P GI +L+SL+ LD F+V   G D    G L+    LRG  S+EG
Sbjct: 631 LRHLENY-TRSLKGLPKGIGRLSSLQTLDVFIVSSHGNDECQIGDLRNLNNLRGRLSVEG 689

Query: 56  LCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNE 115
           L  V    E E+ +L N+ +   L L+FG K                            E
Sbjct: 690 LDEVKDAGEPEKAELKNRVHFQYLTLEFGEK----------------------------E 721

Query: 116 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKL 173
             K + EALQP  N++ L I+ YG   +P W+  +SLA L+ L+L  C  C  LP LG+L
Sbjct: 722 GTKGVAEALQPHPNLKSLGIVDYGDREWPNWMMGSSLAQLKILHLWFCKRCPCLPPLGQL 781

Query: 174 P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232
           P LEKL +  +  VK +G+EFLG         SSS+       FPKLK L I G+ EL++
Sbjct: 782 PVLEKLYIWGMDGVKYIGSEFLG---------SSST------VFPKLKELAISGLVELKQ 826

Query: 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED 292
           W   I  KE  SIMP L+ L +  C KL+ LPD++LQ T LQ L      ++   PIL+ 
Sbjct: 827 WE--IKEKEERSIMPCLNHLIMRGCPKLEGLPDHVLQRTPLQKL------DIAGSPILKR 878

Query: 293 HRTTDIPRLSSLRIGYCPKLKV 314
               DI      +I + P+++V
Sbjct: 879 RYRKDIGE-DRHKISHIPEVEV 899

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772835|emb|CAN71670.1| hypothetical protein VITISV_006248 [Vitis vinifera]

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 130/366 (35%), Positives = 170/366 (46%), Gaps = 106/366 (28%)

Query: 1   MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGG-GVDGSNTGRLQ----LRGECSIEG 55
           +R L N   N+ K +P GI +L+SL+ L+ F+V   G D    G L+    LRG+ SI+G
Sbjct: 649 LRHLENSFLNN-KGLPRGIGRLSSLQTLNVFIVSSHGNDEGQIGDLRNLNNLRGDLSIQG 707

Query: 56  LCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNE 115
           L  V    EAE+ +L NK +L  L L F            + EEG               
Sbjct: 708 LDEVKDAGEAEKAELKNKVHLQDLTLGF------------DREEG--------------- 740

Query: 116 KDKQLLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKL 173
             K + EALQP  N++ L I +YG   +P W+  +SLA L+ LNL  C  C  LP LG+L
Sbjct: 741 -TKGVAEALQPHPNLKALHIYYYGDREWPNWMMGSSLAQLKILNLKFCERCPCLPPLGQL 799

Query: 174 P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE 232
           P LE+L +  +  VK +G+EFLG           SSS+     FPKLK L I G+ EL++
Sbjct: 800 PVLEELGIWKMYGVKCIGSEFLG-----------SSST----VFPKLKELAISGLDELKQ 844

Query: 233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED 292
           W   I  KE  SIMP L+ L +  C KL+ LPD++LQ T LQ L      N+   PILE 
Sbjct: 845 WE--IKEKEERSIMPCLNHLIMRGCPKLEGLPDHVLQRTTLQIL------NIRSSPILER 896

Query: 293 HRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKIS 352
               DI                                              GED HKIS
Sbjct: 897 RYRKDI----------------------------------------------GEDRHKIS 910

Query: 353 HIPHIK 358
           HIP +K
Sbjct: 911 HIPQVK 916

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130338|ref|XP_002328584.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222838566|gb|EEE76931.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/291 (38%), Positives = 147/291 (50%), Gaps = 47/291 (16%)

Query: 9   TNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ----LRGECSIEGLCNVSHVDE 64
           T SL  +P GI +L++LR L KF +G   +G N G L+    LRG   I GL  V +V+E
Sbjct: 655 TESLSVLPQGIGRLSNLRTLSKFCIGENREGCNVGELKNLNHLRGHLEISGLEKVRNVNE 714

Query: 65  AERLQLSNKKNL--LRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLE 122
                L NK++L  L L   FGG+                            E    +LE
Sbjct: 715 VMEANLKNKEHLRSLDLAFSFGGQ----------------------------ELITNVLE 746

Query: 123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLK 181
           ALQP  N+E L +  YGG+I P W+T L  +++L L  C NC+ LP LGKLP LEKL + 
Sbjct: 747 ALQPHPNLEALLVYDYGGSILPSWMTLLTKMKDLKLLRCVNCKELPSLGKLPSLEKLLIG 806

Query: 182 NLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN-YRITRK 240
           +  +VK V  EFLGI+  ++     +S + SV+ FPKLK L    M E E W+    T  
Sbjct: 807 HFNNVKCVSVEFLGIDPVTD----QNSITESVVLFPKLKELTFRYMVEWENWDTTTTTSA 862

Query: 241 ENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILE 291
                MP L SL +  C KLKA+P+ L Q   L+ L I  C      PILE
Sbjct: 863 ATRRTMPCLRSLSLYDCPKLKAIPEGLKQRP-LEELIITRC------PILE 906

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.831	0.284	0.274	3.9e-15
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.481	0.122	0.299	6.6e-15
TAIR|locus:504956182	1049	AT1G58848 [Arabidopsis thalian	0.354	0.122	0.409	1.8e-12
TAIR|locus:2826978	1049	AT1G59218 [Arabidopsis thalian	0.354	0.122	0.409	1.8e-12
TAIR|locus:2175433	811	ADR1-L2 "ADR1-like 2" [Arabido	0.304	0.135	0.308	7.6e-07
TAIR|locus:2171479	623	ADR1-L3 "ADR1-like 3" [Arabido	0.304	0.176	0.291	2.5e-06
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.598	0.177	0.24	7.5e-06
TAIR|locus:2175019	809	AT5G66900 [Arabidopsis thalian	0.462	0.206	0.277	1.3e-05
TAIR|locus:2174944	815	AT5G66910 [Arabidopsis thalian	0.326	0.144	0.318	1.7e-05
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.235	0.074	0.412	0.00011

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 95/346 (27%), Positives = 144/346 (41%)

Query:     1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRL----QLRGECSIEGL 56
             +R L   GT  L+ MP    +L SL+ L  F V    DGS    L     L G+  I  L
Sbjct:   651 LRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSAS-DGSRISELGGLHDLHGKLKIVEL 708

Query:    57 CNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNXXXXXXXXXXXXXXXXXXRRKNEK 116
               V  V +A    L++KK+L  +       D  WR                   R +NE 
Sbjct:   709 QRVVDVADAAEANLNSKKHLREI-------DFVWRTGSSSSENNTNPH------RTQNEA 755

Query:   117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLT--SLANLRELNLSLCFNCEHLPQLGKLP 174
             +  + E L+P  ++E+L I  Y G  FP WL+  S + +  + L  C  C  LP LG+LP
Sbjct:   756 E--VFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLP 813

Query:   175 -LEKLQLKNLKSVKRVGNEFLGIXXXXXXXXXXXXXXXXVIAFPKLKSLEIDGMKELEEW 233
              L++L +  +  ++ +G +F                      F  L++L  D + + +EW
Sbjct:   814 CLKELHISGMVGLQSIGRKFY--------FSDQQLRDQDQQPFRSLETLRFDNLPDWQEW 865

Query:   234 -NYRITRKENISIMPRLSSLEVSSCNKLKA-LPDYLLQMTVLQNLRIFFCENMEELPILE 291
              + R+TR +   + P L  L +  C +L   LP +L  +    +L I+ C  ++  P   
Sbjct:   866 LDVRVTRGD---LFPSLKKLFILRCPELTGTLPTFLPSLI---SLHIYKCGLLDFQP--- 916

Query:   292 DHRTTDIPRLSSLRI-GYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336
             DH       L +L I   C  L   P  L     L KL +  C  L
Sbjct:   917 DHHEYSYRNLQTLSIKSSCDTLVKFP--LNHFANLDKLEVDQCTSL 960

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 6.6e-15, Sum P(2) = 6.6e-15
 Identities = 59/197 (29%), Positives = 89/197 (45%)

Query:     4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ----LRGECSIEGLCNV 59
             LL+     L  MP GI KL SL++L  FV+G  + G+    L+    LRG   I  L NV
Sbjct:   647 LLDLVGTPLVEMPPGIKKLRSLQKLSNFVIGR-LSGAGLHELKELSHLRGTLRISELQNV 705

Query:    60 SHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNXXXXXXXXXXXXXXXXXXRRKNEKDKQ 119
             +   EA+   L  K  L  L L++  K   +                           K+
Sbjct:   706 AFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACD---------------QKE 750

Query:   120 LLEALQPPLNVEELWIIFYGGNIFPKWL--TSLANLRELNLSLCFNCEHLPQLGKLP-LE 176
             +L  L+P  +++   I  Y G  FPKWL  +S   +  + LS C  C  LP +G+LP L+
Sbjct:   751 VLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLK 810

Query:   177 KLQLKNLKSVKRVGNEF 193
              L ++    +++VG +F
Sbjct:   811 YLSIEKFNILQKVGLDF 827

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956182 AT1G58848 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 59/144 (40%), Positives = 83/144 (57%)

Query:   216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN 275
             FP+L  L++  +  LEEW   I   E+ S MP+L +LE+  C KLK LP+   Q   LQN
Sbjct:   921 FPQLHKLKLSELDGLEEW---IV--EDGS-MPQLHTLEIRRCPKLKKLPNGFPQ---LQN 971

Query:   276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335
             L +   E  EE  I+ED     +P L +LRI  CPKLK LPD L    +L+ LT+     
Sbjct:   972 LELNELEEWEEW-IVEDG---SMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTV--PKR 1025

Query:   336 LENRYREGKGEDWHKISHIPHIKW 359
              + R  +G GED++K+ HIP +++
Sbjct:  1026 WKKRLSKG-GEDYYKVQHIPSVEF 1048

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2826978 AT1G59218 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 59/144 (40%), Positives = 83/144 (57%)

Query:   216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN 275
             FP+L  L++  +  LEEW   I   E+ S MP+L +LE+  C KLK LP+   Q   LQN
Sbjct:   921 FPQLHKLKLSELDGLEEW---IV--EDGS-MPQLHTLEIRRCPKLKKLPNGFPQ---LQN 971

Query:   276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335
             L +   E  EE  I+ED     +P L +LRI  CPKLK LPD L    +L+ LT+     
Sbjct:   972 LELNELEEWEEW-IVEDG---SMPLLHTLRIWNCPKLKQLPDGLRFIYSLKNLTV--PKR 1025

Query:   336 LENRYREGKGEDWHKISHIPHIKW 359
              + R  +G GED++K+ HIP +++
Sbjct:  1026 WKKRLSKG-GEDYYKVQHIPSVEF 1048

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175433 ADR1-L2 "ADR1-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 37/120 (30%), Positives = 60/120 (50%)

Query:   216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN 275
             FPKL  L ID   +L E          I  +  L+S+ +++C ++K LP  L ++  LQ 
Sbjct:   650 FPKLSDLTIDHCDDLLEL------PSTICGITSLNSISITNCPRIKELPKNLSKLKALQL 703

Query:   276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335
             LR++ C  +  LP+       ++PRL  + I  C  L  LP+ + +  TL+K+    C L
Sbjct:   704 LRLYACHELNSLPV----EICELPRLKYVDISQCVSLSSLPEKIGKVKTLEKIDTRECSL 759

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2171479 ADR1-L3 "ADR1-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 35/120 (29%), Positives = 61/120 (50%)

Query:   216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN 275
             FPKL  + ID   +L E          I  +  L+S+ +++C  +K LP  + ++  LQ 
Sbjct:   462 FPKLTDITIDYCDDLAEL------PSTICGITSLNSISITNCPNIKELPKNISKLQALQL 515

Query:   276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL 335
             LR++ C  ++ LP+       ++PRL  + I +C  L  LP+ +    TL+K+ +  C L
Sbjct:   516 LRLYACPELKSLPV----EICELPRLVYVDISHCLSLSSLPEKIGNVRTLEKIDMRECSL 571

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 7.5e-06, P = 7.5e-06
 Identities = 54/225 (24%), Positives = 93/225 (41%)

Query:   114 NEKDKQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEHLPQLGK 172
             N +D + L  L    N+EEL +      +  P  +  L +L+ L L  C +   LP  G 
Sbjct:   725 NSEDLKELPNLSTATNLEELKLRDCSSLVELPSSIEKLTSLQRLYLQRCSSLVELPSFGN 784

Query:   173 LP-LEKLQLKNLKSVKRVGNEFLGIXXXXXXXXXXXXXXXXVIAFPKLKSLEIDGMKELE 231
                LE+L L+N  S++++                       V+  P +++       +L 
Sbjct:   785 ATKLEELYLENCSSLEKLPPSI----NANNLQQLSLINCSRVVELPAIENATNLQKLDLG 840

Query:   232 EWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILE 291
               +  I    +I     L  L +S C+ L  LP  +  +T L+   +  C N+ ELPI  
Sbjct:   841 NCSSLIELPLSIGTATNLKELNISGCSSLVKLPSSIGDITNLKEFDLSNCSNLVELPINI 900

Query:   292 DHRTTDIPRLSSL-RIGYCPKL--KVLPDCLLRTTTLQKLTIWGC 333
             + +  D   L+   ++   P++  K+  DC  R + L+ L I  C
Sbjct:   901 NLKFLDTLNLAGCSQLKSFPEISTKIFTDCYQRMSRLRDLRINNC 945

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2175019 AT5G66900 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 51/184 (27%), Positives = 89/184 (48%)

Query:   162 FNC-EHLPQLGKLPLEKLQ--LKNLKSVKRVGNEFLGIXXXXXXXXXXXXXXXXVI-AFP 217
             F+C   LP L ++ LEK+   L ++  ++    + L +                V  A  
Sbjct:   590 FSCLSSLPNLKRIRLEKVSITLLDIPQLQLSSLKKLSLVMCSFGEVFYDTEDIVVSNALS 649

Query:   218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLR 277
             KL+ ++ID   +L+E  Y I+  E +S    L +L +++CNKL  LP+ +  ++ L+ LR
Sbjct:   650 KLQEIDIDYCYDLDELPYWIS--EIVS----LKTLSITNCNKLSQLPEAIGNLSRLEVLR 703

Query:   278 IFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIW---GCP 334
             +    N+ ELP      T  +  L  L I +C  L+ LP  + +   L+K+++    GC 
Sbjct:   704 LCSSMNLSELP----EATEGLSNLRFLDISHCLGLRKLPQEIGKLQNLKKISMRKCSGCE 759

Query:   335 LLEN 338
             L E+
Sbjct:   760 LPES 763

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2174944 AT5G66910 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 42/132 (31%), Positives = 70/132 (53%)

Query:   215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQ 274
             A   L+ ++ID   +L+E  Y I   E +S    L +L +++CNKL  LP+ +  ++ L+
Sbjct:   653 ALSNLQEIDIDYCYDLDELPYWIP--EVVS----LKTLSITNCNKLSQLPEAIGNLSRLE 706

Query:   275 NLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIW--- 331
              LR+  C N+ ELP      T  +  L SL I +C  L+ LP  + +   L+ +++    
Sbjct:   707 VLRMCSCMNLSELP----EATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKCS 762

Query:   332 GCPLLEN-RYRE 342
             GC L ++ RY E
Sbjct:   763 GCELPDSVRYLE 774

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 0.00011, P = 0.00011
 Identities = 40/97 (41%), Positives = 54/97 (55%)

Query:   216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN 275
             FP+L  L++  +  LEEW   I   E+ S MPRL +LE+  C KLK LP+   Q   LQN
Sbjct:   916 FPQLHKLDLSELDGLEEW---IV--EDGS-MPRLHTLEIRRCLKLKKLPNGFPQ---LQN 966

Query:   276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKL 312
             L +   E  EE  I++      +P L +L I +CPKL
Sbjct:   967 LHLTEVEEWEEGMIVKQG---SMPLLHTLYIWHCPKL 1000

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTV 272
           V +   L+++++ G K L+E         ++S+   L +L++S C+ L  LP  +  +  
Sbjct: 630 VHSLTGLRNIDLRGSKNLKEI-------PDLSMATNLETLKLSDCSSLVELPSSIQYLNK 682

Query: 273 LQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPD 317
           L++L +  CEN+E LP        ++  L  L +  C +LK  PD
Sbjct: 683 LEDLDMSRCENLEILPT-----GINLKSLYRLNLSGCSRLKSFPD 722

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 46/178 (25%), Positives = 75/178 (42%), Gaps = 12/178 (6%)

Query: 144 PKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEESSED- 202
           P  +  L  L +L++S C N E LP    + L+ L   NL    R+   F  I  +    
Sbjct: 674 PSSIQYLNKLEDLDMSRCENLEILPT--GINLKSLYRLNLSGCSRL-KSFPDISTNISWL 730

Query: 203 --GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM-PRLSSLEVSSCNK 259
               ++    PS +    L  L +  MK  + W         ++++ P L+ L +S    
Sbjct: 731 DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS 790

Query: 260 LKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPD 317
           L  LP  +  +  L++L I  C N+E LP        ++  L SL +  C +L+  PD
Sbjct: 791 LVELPSSIQNLHKLEHLEIENCINLETLPT-----GINLESLESLDLSGCSRLRTFPD 843

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.82
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.75
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.57
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.49
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.46
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.42
KOG4341	483	consensus F-box protein containing LRR [General fu	99.29
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.18
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.16
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.16
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.09
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.01
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.99
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.85
KOG4341	483	consensus F-box protein containing LRR [General fu	98.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.83
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.73
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.57
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.51
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.3
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.21
PRK15386	426	type III secretion protein GogB; Provisional	98.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.1
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.03
PRK15386	426	type III secretion protein GogB; Provisional	98.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.82
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.79
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.7
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.54
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.43
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.42
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
PLN03150	623	hypothetical protein; Provisional	97.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.22
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.07
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.05
PLN03150	623	hypothetical protein; Provisional	96.89
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.84
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.71
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.55
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.0
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.76
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.56
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.52
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.84
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	93.54
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.06
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.81
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.45
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.33
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	90.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.3
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.73
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	82.88

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.83  E-value=4.6e-20  Score=193.38  Aligned_cols=178  Identities=19%  Similarity=0.086  Sum_probs=82.0

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      |++|++++|.....+|..++++++|++|++.++.... ....+..+. |+ .+.+....    .....+..++++++|++
T Consensus       166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~  240 (968)
T PLN00113        166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNN----LSGEIPYEIGGLTSLNH  240 (968)
T ss_pred             CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCc----cCCcCChhHhcCCCCCE
Confidence            6788888883334678888888888888886554321 111222222 22 22222110    01112223445555555


Q ss_pred             EEEEecCCCCCCcchhhhhhcccccccccccccc------------------cchhhHHHHHhcCCCCCccEEEecccCC
Q 018079           79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRR------------------KNEKDKQLLEALQPPLNVEELWIIFYGG  140 (361)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~  140 (361)
                      |+++.|........++...++++.|++..+....                  .+.....++..+..+++|++|++.+|..
T Consensus       241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~  320 (968)
T PLN00113        241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF  320 (968)
T ss_pred             EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence            5555444332223333444444444444332000                  0000112233344445555555555443


Q ss_pred             CC-CchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEecccc
Q 018079          141 NI-FPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNL  183 (361)
Q Consensus       141 ~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~  183 (361)
                      .. .|.++..+++|+.|++++|.-...+|. ++.++ |+.|+++++
T Consensus       321 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n  366 (968)
T PLN00113        321 TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN  366 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence            32 444455555555555555433333443 44555 666666554

>PLN03210 Resistant to P

Probab=99.82  E-value=1.8e-19  Score=190.23  Aligned_cols=116  Identities=22%  Similarity=0.403  Sum_probs=98.3

Q ss_pred             CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCC----ccc
Q 018079          216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP----ILE  291 (361)
Q Consensus       216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp----~L~  291 (361)
                      +++|+.|+++++..+..++.      .++.+++|+.|++.+|+.++.+|..+ .+++|+.|++++|..++.+|    +|+
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~------si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~  849 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPS------SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNIS  849 (1153)
T ss_pred             cccchheeCCCCCCccccCh------hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccC
Confidence            46788888888877777765      46689999999999999999998766 68999999999998888776    566


Q ss_pred             ccccCC------------CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccchh
Q 018079          292 DHRTTD------------IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLEN  338 (361)
Q Consensus       292 ~L~l~~------------l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~  338 (361)
                      .|++++            +++|+.|++.+|++++.+|..+..+++|+.+++++|+++..
T Consensus       850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~  908 (1153)
T PLN03210        850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTE  908 (1153)
T ss_pred             EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccc
Confidence            666654            78899999999999999998888999999999999998864

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=1.6e-19  Score=189.40  Aligned_cols=315  Identities=17%  Similarity=0.074  Sum_probs=171.4

Q ss_pred             CceeecCCCCccc-ccCccCC-CccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLK-YMPIGIS-KLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~-~lP~~i~-~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      |++|++++| .+. .+|.++. .+++|++|++.++.... ......++ |+ .+.+.+.    ......+..++++++|+
T Consensus        95 L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~l~~L~-~L~Ls~n----~~~~~~p~~~~~l~~L~  167 (968)
T PLN00113         95 IQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTG-SIPRGSIPNLE-TLDLSNN----MLSGEIPNDIGSFSSLK  167 (968)
T ss_pred             CCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCcccc-ccCccccCCCC-EEECcCC----cccccCChHHhcCCCCC
Confidence            456666666 433 5565533 66666666664333221 00001111 22 3332221    11112334467788888


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC-CCchhhhcCccCCee
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKWLTSLANLREL  156 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L  156 (361)
                      .|+++.|.........+...++++.|++..+..      ...++..+..+++|++|++++|... .+|.+++.+++|+.|
T Consensus       168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l------~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  241 (968)
T PLN00113        168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL------VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHL  241 (968)
T ss_pred             EEECccCcccccCChhhhhCcCCCeeeccCCCC------cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEE
Confidence            888887765444445566777777777776531      2234566677778888888777654 367777778888888


Q ss_pred             eecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCC----CCCcccCCCCccEEEEcCCccc
Q 018079          157 NLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSS----SSPSVIAFPKLKSLEIDGMKEL  230 (361)
Q Consensus       157 ~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~l  230 (361)
                      ++++|.....+|. ++.++ |+.|+++++.-...++..+.....+..+.++...    ....+..+++|+.|++.++.-.
T Consensus       242 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~  321 (968)
T PLN00113        242 DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT  321 (968)
T ss_pred             ECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence            8877644445554 67777 8888777654322333333322222222222111    1112345566666666554322


Q ss_pred             hhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCccc-------CCcccccccC-------
Q 018079          231 EEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEE-------LPILEDHRTT-------  296 (361)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-------lp~L~~L~l~-------  296 (361)
                      ...+      ..+..+++|+.|++++|.....+|..+..+++|+.|+++++.--..       +++|+.+++.       
T Consensus       322 ~~~~------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~  395 (968)
T PLN00113        322 GKIP------VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE  395 (968)
T ss_pred             CcCC------hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEeccc
Confidence            2222      1344566777777766543345666666677777777766432222       2233433332       


Q ss_pred             ------CCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          297 ------DIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       297 ------~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                            ++++|+.|++.+|.....+|..+..+++|+.+++++|.
T Consensus       396 ~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~  439 (968)
T PLN00113        396 IPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN  439 (968)
T ss_pred             CCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCc
Confidence                  25667777777665444566666677777777777664

>PLN03210 Resistant to P

Probab=99.75  E-value=1.8e-17  Score=175.20  Aligned_cols=286  Identities=17%  Similarity=0.173  Sum_probs=174.1

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|+++++ .+..+|.++..+++|+++++.++........+..++ |+ .+.+.++..+..    .+..++++++|+.|
T Consensus       613 L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le-~L~L~~c~~L~~----lp~si~~L~~L~~L  686 (1153)
T PLN03210        613 LVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLE-TLKLSDCSSLVE----LPSSIQYLNKLEDL  686 (1153)
T ss_pred             CcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCccc-EEEecCCCCccc----cchhhhccCCCCEE
Confidence            456777777 677777777777788887775433211112222222 33 555554443322    23346677777777


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhh-----------
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLT-----------  148 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~-----------  148 (361)
                      +++.|......... ...++++.|++.....      ...++.   ...+|++|++.++....+|..+.           
T Consensus       687 ~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~------L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~  756 (1153)
T PLN03210        687 DMSRCENLEILPTG-INLKSLYRLNLSGCSR------LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCE  756 (1153)
T ss_pred             eCCCCCCcCccCCc-CCCCCCCEEeCCCCCC------cccccc---ccCCcCeeecCCCccccccccccccccccccccc
Confidence            77765432211111 1344455555543221      111111   12355666666555444443321           


Q ss_pred             -------------------cCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCC
Q 018079          149 -------------------SLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS  207 (361)
Q Consensus       149 -------------------~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~  207 (361)
                                         ..++|+.|++++|+....+|. ++.++ |+.|++++|..++.+|...              
T Consensus       757 ~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--------------  822 (1153)
T PLN03210        757 MKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--------------  822 (1153)
T ss_pred             cchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--------------
Confidence                               124566677777666666665 66777 7777777777777665421              


Q ss_pred             CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccC
Q 018079          208 SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEEL  287 (361)
Q Consensus       208 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l  287 (361)
                             .+++|+.|++++|..+..++.         ..++|+.|++.+ +.++.+|.++..+++|+.|++++|+.++.+
T Consensus       823 -------~L~sL~~L~Ls~c~~L~~~p~---------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        823 -------NLESLESLDLSGCSRLRTFPD---------ISTNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             -------CccccCEEECCCCCccccccc---------cccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence                   577888888888877766554         356788888877 467888988889999999999999999888


Q ss_pred             CcccccccCCCCCccEEEEecCCCCCcccc-c------------cCCCCCCCeEEEeCCccch
Q 018079          288 PILEDHRTTDIPRLSSLRIGYCPKLKVLPD-C------------LLRTTTLQKLTIWGCPLLE  337 (361)
Q Consensus       288 p~L~~L~l~~l~~L~~L~l~~c~~l~~l~~-~------------l~~l~~L~~L~l~~c~~l~  337 (361)
                      |.    .+..+++|+.+++.+|..++.++- .            ...+|+...+.+.+|.++.
T Consensus       886 ~~----~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~  944 (1153)
T PLN03210        886 SL----NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLD  944 (1153)
T ss_pred             Cc----ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCC
Confidence            74    455678888888888887765431 0            1223444556777777664

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=4.1e-19  Score=164.78  Aligned_cols=311  Identities=16%  Similarity=0.184  Sum_probs=204.1

Q ss_pred             ceeecCCCCcccccC-ccCCCccccceecceeeecCCCCCcccccc--eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            2 RSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      +.|+++++ ++.+.- .+|-++++|+.+++.+.... ...++....  +. .+.+.+    ......-...++-++.|+.
T Consensus        81 ~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~-~L~L~~----N~I~sv~se~L~~l~alrs  153 (873)
T KOG4194|consen   81 QTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE-KLDLRH----NLISSVTSEELSALPALRS  153 (873)
T ss_pred             eeeecccc-ccccCcHHHHhcCCcceeeeeccchhh-hccccccccccee-EEeeec----cccccccHHHHHhHhhhhh
Confidence            45888888 777764 56888899999988433333 222221111  22 222221    0111122334666778888


Q ss_pred             EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCchhhh-cCccCCee
Q 018079           79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLREL  156 (361)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L  156 (361)
                      |+++.|........++....++..|+++.+.       +..+ ...+..+.+|-.|.++.+....+|.... .+++|+.|
T Consensus       154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N~-------It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L  226 (873)
T KOG4194|consen  154 LDLSRNLISEIPKPSFPAKVNIKKLNLASNR-------ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESL  226 (873)
T ss_pred             hhhhhchhhcccCCCCCCCCCceEEeecccc-------ccccccccccccchheeeecccCcccccCHHHhhhcchhhhh
Confidence            8888888877777778887888888888654       3333 3456677788888999888888877655 48999999


Q ss_pred             eecCCCCCCCC--CCCCCCc-cceEeccccccceeeccc-ccccCCCCCCCCCCC----CCCCcccCCCCccEEEEcCCc
Q 018079          157 NLSLCFNCEHL--PQLGKLP-LEKLQLKNLKSVKRVGNE-FLGIEESSEDGPSSS----SSSPSVIAFPKLKSLEIDGMK  228 (361)
Q Consensus       157 ~l~~~~~~~~l--~~l~~l~-L~~L~l~~~~~l~~l~~~-~~~~~~~~~~~~~~~----~~~~~l~~~~~L~~L~L~~~~  228 (361)
                      ++..+ .++..  -.+..++ |+.|.+.+ +++..+... |++...++.+.+..+    -..+++-++.+|+.|++++ +
T Consensus       227 dLnrN-~irive~ltFqgL~Sl~nlklqr-N~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-N  303 (873)
T KOG4194|consen  227 DLNRN-RIRIVEGLTFQGLPSLQNLKLQR-NDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-N  303 (873)
T ss_pred             hcccc-ceeeehhhhhcCchhhhhhhhhh-cCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-h
Confidence            98875 55533  3377888 99888886 456666554 445555554444422    2333455667777777765 2


Q ss_pred             cchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcc--------cCCcccccccCC--
Q 018079          229 ELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENME--------ELPILEDHRTTD--  297 (361)
Q Consensus       229 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~--------~lp~L~~L~l~~--  297 (361)
                      .+..+-.     .+...+++|+.|+++. +.++++++.- ..+..|++|++++ +.+.        .+.+|++|++++  
T Consensus       304 aI~rih~-----d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  304 AIQRIHI-----DSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             hhheeec-----chhhhcccceeEeccc-cccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            3332221     2233577788888877 5677776543 3367777777776 3333        244677777766  


Q ss_pred             --------------CCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCccch
Q 018079          298 --------------IPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPLLE  337 (361)
Q Consensus       298 --------------l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~  337 (361)
                                    +++|++|++.| ++++.+| ..|..+++|++|++.+++-..
T Consensus       377 ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  377 LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             EEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCccee
Confidence                          89999999998 7899999 788999999999999987543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.71  E-value=6e-19  Score=157.08  Aligned_cols=318  Identities=23%  Similarity=0.218  Sum_probs=209.0

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCC----------------CCCcccccc---eeceeEEcCCCCCCCh
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV----------------DGSNTGRLQ---LRGECSIEGLCNVSHV   62 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~----------------~~~~l~~L~---L~~~l~l~~l~~~~~~   62 (361)
                      +.|+++.+ .+.++|++|+.+-.|..++..+.....                .++.+.+++   .. .-++.+++-..+.
T Consensus       117 ~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~  194 (565)
T KOG0472|consen  117 VKLDCSSN-ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNL  194 (565)
T ss_pred             hhhhcccc-ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhh
Confidence            44555555 556666666666666666552221110                344444444   11 1122233333444


Q ss_pred             HHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhc-CCCCCccEEEecccCCC
Q 018079           63 DEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEAL-QPPLNVEELWIIFYGGN  141 (361)
Q Consensus        63 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~  141 (361)
                      -+.++..+++|.+|+.|+++.|...+.+  ++.....+..+|..++.       ...++.++ ..++++..||++++...
T Consensus       195 L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  195 LETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             hhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccH-------HHhhHHHHhcccccceeeeccccccc
Confidence            4666778999999999999999887755  77888888889998886       66665554 48899999999999999


Q ss_pred             CCchhhhcCccCCeeeecCCCCCCCCCC-CCCCccceEeccccccceeecccccccCCC----------CCCCCC-----
Q 018079          142 IFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLPLEKLQLKNLKSVKRVGNEFLGIEES----------SEDGPS-----  205 (361)
Q Consensus       142 ~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~L~~L~l~~~~~l~~l~~~~~~~~~~----------~~~~~~-----  205 (361)
                      ++|..+..+++|++|+++++ .+..+|. ++.+.|+.|.+.|.+ ++++..++...++-          ..++++     
T Consensus       266 e~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnlhL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~  343 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNN-DISSLPYSLGNLHLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG  343 (565)
T ss_pred             cCchHHHHhhhhhhhcccCC-ccccCCcccccceeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence            99999999999999999985 7888887 777768888777643 33333222211110          001111     


Q ss_pred             -------CCCCCCcccCCCCccEEEEcCCccchhhhhhhc----------------------------------------
Q 018079          206 -------SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT----------------------------------------  238 (361)
Q Consensus       206 -------~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~----------------------------------------  238 (361)
                             ....++......+.+.|++++ .+++..|.++.                                        
T Consensus       344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn  422 (565)
T KOG0472|consen  344 TETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN  422 (565)
T ss_pred             ccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence                   222333344445566666654 22222221000                                        


Q ss_pred             ----cccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCC-------cccccc-------------
Q 018079          239 ----RKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP-------ILEDHR-------------  294 (361)
Q Consensus       239 ----~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-------~L~~L~-------------  294 (361)
                          -...+..+++|..|++++ +-+.++|..++.+..|++|+++. +.++.+|       .++.+-             
T Consensus       423 ~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~  500 (565)
T KOG0472|consen  423 KISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSG  500 (565)
T ss_pred             ccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHH
Confidence                011234678999999987 56789999999999999999997 3666666       122221             


Q ss_pred             cCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          295 TTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       295 l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      +.++.+|.+|++.+ +.+..+|.+++++.+|++|+++|+|--
T Consensus       501 l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  501 LKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCccC
Confidence            23378899999987 688999999999999999999999864

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=3.7e-18  Score=159.68  Aligned_cols=209  Identities=20%  Similarity=0.243  Sum_probs=113.2

Q ss_pred             hHHHHHhcCCCCCccEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccc----cceee
Q 018079          117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLK----SVKRV  189 (361)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~----~l~~l  189 (361)
                      ..+++..+....++-.|+++++.+.++|..+. ++..|-.|+++.+ .+..+|+ +.++. |++|.+++.+    .+..+
T Consensus       115 L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL  193 (1255)
T KOG0444|consen  115 LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL  193 (1255)
T ss_pred             hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence            55555555555556666666666555555444 4555555555553 4555554 45555 5555555432    01111


Q ss_pred             cccccccCCCCCCCCC-CC-CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc
Q 018079          190 GNEFLGIEESSEDGPS-SS-SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL  267 (361)
Q Consensus       190 ~~~~~~~~~~~~~~~~-~~-~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~  267 (361)
                      |. +.....++.-+.+ +. ....++..+.||..++++. +++...|.      .+..+++|+.|++++ +.++.+..+.
T Consensus       194 Ps-mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPe------cly~l~~LrrLNLS~-N~iteL~~~~  264 (1255)
T KOG0444|consen  194 PS-MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPE------CLYKLRNLRRLNLSG-NKITELNMTE  264 (1255)
T ss_pred             cc-chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchH------HHhhhhhhheeccCc-CceeeeeccH
Confidence            10 0000000000000 00 0001133555666666653 44544443      444667777777777 4666665555


Q ss_pred             cCCCCcceEeeccCCCcccCC-------cccccccCC-------------------------------------CCCccE
Q 018079          268 LQMTVLQNLRIFFCENMEELP-------ILEDHRTTD-------------------------------------IPRLSS  303 (361)
Q Consensus       268 ~~l~~L~~L~l~~c~~l~~lp-------~L~~L~l~~-------------------------------------l~~L~~  303 (361)
                      +.+.+|++|+++. +.+..+|       +|+.|...+                                     |..|++
T Consensus       265 ~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~k  343 (1255)
T KOG0444|consen  265 GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQK  343 (1255)
T ss_pred             HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHH
Confidence            5566666666665 3343333       333333322                                     778888


Q ss_pred             EEEecCCCCCccccccCCCCCCCeEEEeCCccch
Q 018079          304 LRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLE  337 (361)
Q Consensus       304 L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~  337 (361)
                      |.+. |+.+-.+|++++-++.|+.|++.++|++.
T Consensus       344 L~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  344 LKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hccc-ccceeechhhhhhcCCcceeeccCCcCcc
Confidence            8886 47788899999999999999999998875

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.57  E-value=1.6e-16  Score=154.77  Aligned_cols=212  Identities=24%  Similarity=0.392  Sum_probs=149.7

Q ss_pred             CCccEEEecccCCCCCchhhhcCccCCeeeecCCC----------------------CCCCCCC-CCCCc-cceEecccc
Q 018079          128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCF----------------------NCEHLPQ-LGKLP-LEKLQLKNL  183 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~----------------------~~~~l~~-l~~l~-L~~L~l~~~  183 (361)
                      .+|++++++.+....+|+|++.+.+|+.+....+.                      .+..+|+ .+.+. |++|++.. 
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~-  319 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS-  319 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh-
Confidence            46888888888887899999988888888765432                      3334455 44477 88888874 


Q ss_pred             ccceeecccccccCCC----------C--------------------CCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079          184 KSVKRVGNEFLGIEES----------S--------------------EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       184 ~~l~~l~~~~~~~~~~----------~--------------------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      +++..+|+.++..-..          .                    ..+..++.+++.+.+|++|+.|++++ +.+..+
T Consensus       320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~f  398 (1081)
T KOG0618|consen  320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSF  398 (1081)
T ss_pred             ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccC
Confidence            4466665443321110          0                    01111778999999999999999998 567777


Q ss_pred             hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079          234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK  313 (361)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~  313 (361)
                      +.     ..+..++.|++|++++ ++++.+|..+..+..|++|...+ +.+.++|     .+..++.|+.+|++ |++++
T Consensus       399 pa-----s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-----e~~~l~qL~~lDlS-~N~L~  465 (1081)
T KOG0618|consen  399 PA-----SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-----ELAQLPQLKVLDLS-CNNLS  465 (1081)
T ss_pred             CH-----HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-----hhhhcCcceEEecc-cchhh
Confidence            76     4566889999999999 68999999999999999997765 6777888     45667889999997 57776


Q ss_pred             ccc-cccCCCCCCCeEEEeCCccchhhccCCCCcccchhccCCceec
Q 018079          314 VLP-DCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKW  359 (361)
Q Consensus       314 ~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~~  359 (361)
                      .+- ....-.|+||+|+++|+..+..     ..+.++..+++...+|
T Consensus       466 ~~~l~~~~p~p~LkyLdlSGN~~l~~-----d~~~l~~l~~l~~~~i  507 (1081)
T KOG0618|consen  466 EVTLPEALPSPNLKYLDLSGNTRLVF-----DHKTLKVLKSLSQMDI  507 (1081)
T ss_pred             hhhhhhhCCCcccceeeccCCccccc-----chhhhHHhhhhhheec
Confidence            643 2222338999999999986432     3444444555444333

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.49  E-value=2.9e-15  Score=139.46  Aligned_cols=57  Identities=18%  Similarity=0.329  Sum_probs=36.7

Q ss_pred             CCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEe
Q 018079          270 MTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIW  331 (361)
Q Consensus       270 l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~  331 (361)
                      +++|..|.+.| ++++++|+   =.++++++|+.|++.++...+--|..|.++ .|++|.+.
T Consensus       391 l~~LrkL~l~g-Nqlk~I~k---rAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n  447 (873)
T KOG4194|consen  391 LPSLRKLRLTG-NQLKSIPK---RAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN  447 (873)
T ss_pred             chhhhheeecC-ceeeecch---hhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence            55666666655 45555542   144558999999998854433345778877 78888664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.46  E-value=3.7e-16  Score=139.42  Aligned_cols=235  Identities=19%  Similarity=0.152  Sum_probs=162.2

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc--eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      |.+|++.++ ++.++|++|+++..++.++.       ..+++.+++  ......+..+.-..+-....+..++++..+..
T Consensus        70 l~vl~~~~n-~l~~lp~aig~l~~l~~l~v-------s~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~d  141 (565)
T KOG0472|consen   70 LTVLNVHDN-KLSQLPAAIGELEALKSLNV-------SHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLED  141 (565)
T ss_pred             eeEEEeccc-hhhhCCHHHHHHHHHHHhhc-------ccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhh
Confidence            346777777 77888888888888888888       555665655  11011111111111111112223555666666


Q ss_pred             EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeee
Q 018079           79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNL  158 (361)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l  158 (361)
                      ++...|...+.+ ....+...+..+++..++       ..+.++....++.|++++...+.-.++|+.++.+.+|..|++
T Consensus       142 l~~~~N~i~slp-~~~~~~~~l~~l~~~~n~-------l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL  213 (565)
T KOG0472|consen  142 LDATNNQISSLP-EDMVNLSKLSKLDLEGNK-------LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYL  213 (565)
T ss_pred             hhccccccccCc-hHHHHHHHHHHhhccccc-------hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHh
Confidence            666666554433 223444455556666555       556655555578899999888887789999999999999999


Q ss_pred             cCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079          159 SLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI  237 (361)
Q Consensus       159 ~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~  237 (361)
                      ..+ .+..+|.++... |+.++++. +.++.++.+.                   ...+++|.+|++.+ .++++.|.  
T Consensus       214 ~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~-------------------~~~L~~l~vLDLRd-Nklke~Pd--  269 (565)
T KOG0472|consen  214 RRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEH-------------------LKHLNSLLVLDLRD-NKLKEVPD--  269 (565)
T ss_pred             hhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHH-------------------hcccccceeeeccc-cccccCch--
Confidence            884 788888888888 99999885 5577776654                   33789999999988 68888876  


Q ss_pred             ccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079          238 TRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       238 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                          .+..+.+|++|++++ +.++.+|..++++ .|+.|.+.|.
T Consensus       270 ----e~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  270 ----EICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             ----HHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence                555788999999988 5788999999988 8888888764

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=1e-12  Score=130.96  Aligned_cols=77  Identities=29%  Similarity=0.376  Sum_probs=57.0

Q ss_pred             CCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCC
Q 018079          246 MPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTL  325 (361)
Q Consensus       246 l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L  325 (361)
                      .++|+.|+++++ .++.+|..   .++|+.|+++++ .+..+|.+       ..+|+.|++++ ++++.+|+.+..+++|
T Consensus       381 ~~~L~~LdLs~N-~Lt~LP~l---~s~L~~LdLS~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~LP~sl~~L~~L  447 (788)
T PRK15387        381 PSGLKELIVSGN-RLTSLPVL---PSELKELMVSGN-RLTSLPML-------PSGLLSLSVYR-NQLTRLPESLIHLSSE  447 (788)
T ss_pred             ccccceEEecCC-cccCCCCc---ccCCCEEEccCC-cCCCCCcc-------hhhhhhhhhcc-CcccccChHHhhccCC
Confidence            346778888763 56666643   356788888874 46666642       34678888887 5788999889999999


Q ss_pred             CeEEEeCCcc
Q 018079          326 QKLTIWGCPL  335 (361)
Q Consensus       326 ~~L~l~~c~~  335 (361)
                      +.|++++++-
T Consensus       448 ~~LdLs~N~L  457 (788)
T PRK15387        448 TTVNLEGNPL  457 (788)
T ss_pred             CeEECCCCCC
Confidence            9999999974

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.42  E-value=1.8e-15  Score=141.87  Aligned_cols=236  Identities=21%  Similarity=0.168  Sum_probs=148.8

Q ss_pred             eeecCCCCcccccCcc-CCCccccceecceeeecCCCCCcccccc--eec--eeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            3 SLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRG--ECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~--~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      +|+++++ +|+.+|.. +-+|+.|-+|++       ..+.+..|+  .+.  .+.-..+.+ ..+.......+..|+.|+
T Consensus       130 VLNLS~N-~IetIPn~lfinLtDLLfLDL-------S~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  130 VLNLSYN-NIETIPNSLFINLTDLLFLDL-------SNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             EEEcccC-ccccCCchHHHhhHhHhhhcc-------ccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhh
Confidence            5777877 77888865 667777778888       444555554  110  111111111 112222333455566677


Q ss_pred             eEEEEecCC-CCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCee
Q 018079           78 RLHLQFGGK-DEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLREL  156 (361)
Q Consensus        78 ~L~l~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L  156 (361)
                      .|.++.... .+....+++...++..+|+.+++       ...+++.+..+++|+.|+++++...++.-.++...+|+.|
T Consensus       201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-------Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtL  273 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-------LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETL  273 (1255)
T ss_pred             hhhcccccchhhcCCCchhhhhhhhhccccccC-------CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhh
Confidence            777765432 33335566667777777777766       6667778888888888888888877766666677788888


Q ss_pred             eecCCCCCCCCCC-CCCCc-cceEeccccccce--eecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079          157 NLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVK--RVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE  232 (361)
Q Consensus       157 ~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~--~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~  232 (361)
                      +++.+ .++.+|. +..++ |+.|.+.+.. +.  .+|.                    .++.+.+|+.+..++ ++++-
T Consensus       274 NlSrN-QLt~LP~avcKL~kL~kLy~n~Nk-L~FeGiPS--------------------GIGKL~~Levf~aan-N~LEl  330 (1255)
T KOG0444|consen  274 NLSRN-QLTVLPDAVCKLTKLTKLYANNNK-LTFEGIPS--------------------GIGKLIQLEVFHAAN-NKLEL  330 (1255)
T ss_pred             ccccc-hhccchHHHhhhHHHHHHHhccCc-ccccCCcc--------------------chhhhhhhHHHHhhc-ccccc
Confidence            88874 6677776 77777 8887776532 21  1221                    144666777776665 44554


Q ss_pred             hhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCc
Q 018079          233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENM  284 (361)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l  284 (361)
                      .|.      +++.|++|+.|.+.. +++-++|..+.-++-|+.|++...+++
T Consensus       331 VPE------glcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnL  375 (1255)
T KOG0444|consen  331 VPE------GLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNL  375 (1255)
T ss_pred             Cch------hhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCc
Confidence            443      666777788877744 667777777777777777777776665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.29  E-value=1.8e-13  Score=123.03  Aligned_cols=301  Identities=15%  Similarity=0.156  Sum_probs=186.4

Q ss_pred             CceeecCCCCcccc--cCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHH-HHhhcCCCCCC
Q 018079            1 MRSLLNFGTNSLKY--MPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEA-ERLQLSNKKNL   76 (361)
Q Consensus         1 L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~-~~~~l~~l~~L   76 (361)
                      ||.|.+++|.....  +-..-...+++++|.++.+... +...+..+. ...+++..++.......+. +.....++++|
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i-Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI-TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceec-cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46677777743222  2222345566777777666544 333344443 2223333333333333333 33356788999


Q ss_pred             ceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh---hcCccC
Q 018079           77 LRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL---TSLANL  153 (361)
Q Consensus        77 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~---~~l~~L  153 (361)
                      ++++++|+....                            ...+-.....+..++.+...||...+.-...   ++..-+
T Consensus       219 ~~lNlSwc~qi~----------------------------~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i  270 (483)
T KOG4341|consen  219 KYLNLSWCPQIS----------------------------GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI  270 (483)
T ss_pred             HHhhhccCchhh----------------------------cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence            999999987643                            1122222334445666666677655432221   245556


Q ss_pred             CeeeecCCCCCCCCCC--CCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079          154 RELNLSLCFNCEHLPQ--LGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE  229 (361)
Q Consensus       154 ~~L~l~~~~~~~~l~~--l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  229 (361)
                      ..+++..|..+++...  +... . |+.+..++|..+...+....+.                  +.++|+.+.+.+|..
T Consensus       271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~------------------~~~~L~~l~l~~c~~  332 (483)
T KOG4341|consen  271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ------------------HCHNLQVLELSGCQQ  332 (483)
T ss_pred             hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc------------------CCCceEEEeccccch
Confidence            6777777766664432  3333 3 8888888887766655544433                  678999999999998


Q ss_pred             chhhhhhhccccccccCCCccEEEEecCCCCCcc--chhccCCCCcceEeeccCCCcccCCccccccc--CCCCCccEEE
Q 018079          230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL--PDYLLQMTVLQNLRIFFCENMEELPILEDHRT--TDIPRLSSLR  305 (361)
Q Consensus       230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l--~~l~~L~~L~  305 (361)
                      +.+..+    ...-.+++.|+.+++.+|....+-  -.-..+++.|+.+.+++|..+++-. .+.+.-  -....|+.+.
T Consensus       333 fsd~~f----t~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g-i~~l~~~~c~~~~l~~lE  407 (483)
T KOG4341|consen  333 FSDRGF----TMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG-IRHLSSSSCSLEGLEVLE  407 (483)
T ss_pred             hhhhhh----hhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh-hhhhhhccccccccceee
Confidence            877665    344457899999999988655432  2223458999999999998776541 111222  2266799999


Q ss_pred             EecCCCCCccc-cccCCCCCCCeEEEeCCccchhhccCCCCcccchhccCCceec
Q 018079          306 IGYCPKLKVLP-DCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKW  359 (361)
Q Consensus       306 l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~~  359 (361)
                      +.+|+.+++-. +.+..+++|+.+++.+|..+.+...      -+.-.|.|+|++
T Consensus       408 L~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i------~~~~~~lp~i~v  456 (483)
T KOG4341|consen  408 LDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI------SRFATHLPNIKV  456 (483)
T ss_pred             ecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh------HHHHhhCcccee
Confidence            99999987754 6678889999999999988764222      123456666654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.18  E-value=1.6e-11  Score=124.98  Aligned_cols=214  Identities=26%  Similarity=0.318  Sum_probs=115.9

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKN   75 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~   75 (361)
                      ||+||+++|..+.++|++|++|.+||+|++       ..+.+.+|+     |+ .+...++........ .+.....|.+
T Consensus       573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L-------~~t~I~~LP~~l~~Lk-~L~~Lnl~~~~~l~~-~~~i~~~L~~  643 (889)
T KOG4658|consen  573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDL-------SDTGISHLPSGLGNLK-KLIYLNLEVTGRLES-IPGILLELQS  643 (889)
T ss_pred             eEEEECCCCCccCcCChHHhhhhhhhcccc-------cCCCccccchHHHHHH-hhheecccccccccc-ccchhhhccc
Confidence            789999999899999999999999999999       666776666     33 333334333222111 1445666889


Q ss_pred             CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCC-
Q 018079           76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLR-  154 (361)
Q Consensus        76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~-  154 (361)
                      ||.|.+.......                            .......+..+.+|+.+.+..... .+-..+..+..|. 
T Consensus       644 Lr~L~l~~s~~~~----------------------------~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~  694 (889)
T KOG4658|consen  644 LRVLRLPRSALSN----------------------------DKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRS  694 (889)
T ss_pred             ccEEEeecccccc----------------------------chhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHH
Confidence            9999988765211                            333445556666676666644332 1111111222222 


Q ss_pred             ---eeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCccc-CCCCccEEEEcCCcc
Q 018079          155 ---ELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVI-AFPKLKSLEIDGMKE  229 (361)
Q Consensus       155 ---~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~  229 (361)
                         .+.+.+|........++.++ |+.|.+.+|...+... .......              .- .|+++..+.+.+|..
T Consensus       695 ~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~--------------~~~~f~~l~~~~~~~~~~  759 (889)
T KOG4658|consen  695 LLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLI--------------VLLCFPNLSKVSILNCHM  759 (889)
T ss_pred             HhHhhhhcccccceeecccccccCcceEEEEcCCCchhhc-ccccccc--------------hhhhHHHHHHHHhhcccc
Confidence               22222232233333456666 7777777766432221 1110000              00 255555555555544


Q ss_pred             chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcc
Q 018079          230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQ  274 (361)
Q Consensus       230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~  274 (361)
                      ..+...       ..-.|+|+.|.+.+|..++.+......+..++
T Consensus       760 ~r~l~~-------~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~  797 (889)
T KOG4658|consen  760 LRDLTW-------LLFAPHLTSLSLVSCRLLEDIIPKLKALLELK  797 (889)
T ss_pred             ccccch-------hhccCcccEEEEecccccccCCCHHHHhhhcc
Confidence            443321       11356777777777766665544443333333

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.16  E-value=3.9e-13  Score=107.24  Aligned_cols=182  Identities=27%  Similarity=0.344  Sum_probs=140.1

Q ss_pred             HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCC
Q 018079          122 EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEES  199 (361)
Q Consensus       122 ~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~  199 (361)
                      .++-.+.+...|.++++....+|+.+..+.+|+.|+++++ .++.+|. +..+| |+.|++. ++.+..+|..       
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~lprg-------   97 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNILPRG-------   97 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcCccc-------
Confidence            3455567788899999998889999999999999999985 7888888 88999 9999997 5667777765       


Q ss_pred             CCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeec
Q 018079          200 SEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIF  279 (361)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~  279 (361)
                                   ++.||.|+.|++.+ .++.+-..    +..+..+.-|+.|++++ +..+.+|..++.+++|+.|.++
T Consensus        98 -------------fgs~p~levldlty-nnl~e~~l----pgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lr  158 (264)
T KOG0617|consen   98 -------------FGSFPALEVLDLTY-NNLNENSL----PGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLR  158 (264)
T ss_pred             -------------cCCCchhhhhhccc-cccccccC----CcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeec
Confidence                         44899999999987 44543333    33555667788899988 5688899999999999999999


Q ss_pred             cCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCC---CCCeEEEeCCccch
Q 018079          280 FCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTT---TLQKLTIWGCPLLE  337 (361)
Q Consensus       280 ~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~---~L~~L~l~~c~~l~  337 (361)
                      . +.+-++|+    .++.++.|++|+|.+ +.++-+|..++++.   +=+.+.+..+|.+.
T Consensus       159 d-ndll~lpk----eig~lt~lrelhiqg-nrl~vlppel~~l~l~~~k~v~r~E~NPwv~  213 (264)
T KOG0617|consen  159 D-NDLLSLPK----EIGDLTRLRELHIQG-NRLTVLPPELANLDLVGNKQVMRMEENPWVN  213 (264)
T ss_pred             c-CchhhCcH----HHHHHHHHHHHhccc-ceeeecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence            8 56667786    677788899999998 67888886665442   12344555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.16  E-value=4.4e-11  Score=119.94  Aligned_cols=159  Identities=22%  Similarity=0.302  Sum_probs=95.8

Q ss_pred             CccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCCC
Q 018079          129 NVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS  206 (361)
Q Consensus       129 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  206 (361)
                      +|++|++++|....+|..+.  .+|+.|++++| .+..+|.  .++  |+.|+++++ .+..++..              
T Consensus       263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~--~lp~sL~~L~Ls~N-~Lt~LP~~--------------  322 (754)
T PRK15370        263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPA--HLPSGITHLNVQSN-SLTALPET--------------  322 (754)
T ss_pred             CCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCcc--cchhhHHHHHhcCC-ccccCCcc--------------
Confidence            46666666555444554332  35666666654 3444442  223  555555542 23333321              


Q ss_pred             CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCccc
Q 018079          207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEE  286 (361)
Q Consensus       207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  286 (361)
                              ..++|+.|++.++ .+..++.      .  ..++|+.|+++++ .+..+|..+  .++|+.|++++| .+..
T Consensus       323 --------l~~sL~~L~Ls~N-~Lt~LP~------~--l~~sL~~L~Ls~N-~L~~LP~~l--p~~L~~LdLs~N-~Lt~  381 (754)
T PRK15370        323 --------LPPGLKTLEAGEN-ALTSLPA------S--LPPELQVLDVSKN-QITVLPETL--PPTITTLDVSRN-ALTN  381 (754)
T ss_pred             --------ccccceeccccCC-ccccCCh------h--hcCcccEEECCCC-CCCcCChhh--cCCcCEEECCCC-cCCC
Confidence                    2367888888875 4555543      1  2368999999885 577777654  368899999885 5666


Q ss_pred             CCcccccccCCCCCccEEEEecCCCCCcccccc----CCCCCCCeEEEeCCcc
Q 018079          287 LPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCL----LRTTTLQKLTIWGCPL  335 (361)
Q Consensus       287 lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l----~~l~~L~~L~l~~c~~  335 (361)
                      +|.    .+  ..+|+.|++++ +++..+|..+    ..++++..+++.++|-
T Consensus       382 LP~----~l--~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        382 LPE----NL--PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CCH----hH--HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence            663    11  23677788887 4666776543    3457888899988874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.09  E-value=4.4e-10  Score=112.45  Aligned_cols=250  Identities=18%  Similarity=0.124  Sum_probs=142.2

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      .|+++++ .+..+|+++.  .+|+.|++.       .+.+..++     |+ .+.+.+- .+..+    +   ...++|+
T Consensus       205 ~LdLs~~-~LtsLP~~l~--~~L~~L~L~-------~N~Lt~LP~lp~~Lk-~LdLs~N-~LtsL----P---~lp~sL~  265 (788)
T PRK15387        205 VLNVGES-GLTTLPDCLP--AHITTLVIP-------DNNLTSLPALPPELR-TLEVSGN-QLTSL----P---VLPPGLL  265 (788)
T ss_pred             EEEcCCC-CCCcCCcchh--cCCCEEEcc-------CCcCCCCCCCCCCCc-EEEecCC-ccCcc----c---Ccccccc
Confidence            5788888 8888898776  378888883       34444443     22 3333220 11111    0   1124666


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeee
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELN  157 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~  157 (361)
                      .|+++.|.....+    .....+..|++..++       ...++.   .+++|++|++++|....+|..   ..+|+.|+
T Consensus       266 ~L~Ls~N~L~~Lp----~lp~~L~~L~Ls~N~-------Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~  328 (788)
T PRK15387        266 ELSIFSNPLTHLP----ALPSGLCKLWIFGNQ-------LTSLPV---LPPGLQELSVSDNQLASLPAL---PSELCKLW  328 (788)
T ss_pred             eeeccCCchhhhh----hchhhcCEEECcCCc-------cccccc---cccccceeECCCCccccCCCC---cccccccc
Confidence            7777666543211    122344555555443       222222   235688888887776666542   23466666


Q ss_pred             ecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCCCCC--CCCcccCCCCccEEEEcCCccchhh
Q 018079          158 LSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSS--SSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       158 l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      +++| .+..+|.   +|  |+.|++++ +.++.+|....   .+..+.++.+.  .++.  ...+|+.|+++++ .+..+
T Consensus       329 Ls~N-~L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~lp~---~L~~L~Ls~N~L~~LP~--l~~~L~~LdLs~N-~Lt~L  397 (788)
T PRK15387        329 AYNN-QLTSLPT---LPSGLQELSVSD-NQLASLPTLPS---ELYKLWAYNNRLTSLPA--LPSGLKELIVSGN-RLTSL  397 (788)
T ss_pred             cccC-ccccccc---cccccceEecCC-CccCCCCCCCc---ccceehhhccccccCcc--cccccceEEecCC-cccCC
Confidence            6664 4455553   34  77777775 34555543211   11111111111  1111  2347899999874 56655


Q ss_pred             hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079          234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK  313 (361)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~  313 (361)
                      +.         ..++|+.|+++++ .+..+|..   +.+|+.|++++ +.++.+|.    .+.++++|+.|++++++.-.
T Consensus       398 P~---------l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~----sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        398 PV---------LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPE----SLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             CC---------cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccCh----HHhhccCCCeEECCCCCCCc
Confidence            44         3568999999985 68888754   35788899987 56778885    56678899999999875544


Q ss_pred             cccc
Q 018079          314 VLPD  317 (361)
Q Consensus       314 ~l~~  317 (361)
                      ..+.
T Consensus       460 ~~~~  463 (788)
T PRK15387        460 RTLQ  463 (788)
T ss_pred             hHHH
Confidence            4443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.01  E-value=6.1e-10  Score=111.84  Aligned_cols=157  Identities=22%  Similarity=0.277  Sum_probs=113.5

Q ss_pred             CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCC-c-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      ++|+.|++++|....+|.++.  .+|+.|+++++ .+..+|.  .+ + |+.|+++++ .++.++..             
T Consensus       241 ~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~--~l~~sL~~L~Ls~N-~Lt~LP~~-------------  301 (754)
T PRK15370        241 DTIQEMELSINRITELPERLP--SALQSLDLFHN-KISCLPE--NLPEELRYLSVYDN-SIRTLPAH-------------  301 (754)
T ss_pred             ccccEEECcCCccCcCChhHh--CCCCEEECcCC-ccCcccc--ccCCCCcEEECCCC-ccccCccc-------------
Confidence            478999999998878887664  57999999875 6666664  23 4 999999875 46655532             


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME  285 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  285 (361)
                               ..++|+.|++.++ .+..++.      .  ..++|+.|++.+| .++.+|..+  +++|+.|++++| .+.
T Consensus       302 ---------lp~sL~~L~Ls~N-~Lt~LP~------~--l~~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N-~L~  359 (754)
T PRK15370        302 ---------LPSGITHLNVQSN-SLTALPE------T--LPPGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKN-QIT  359 (754)
T ss_pred             ---------chhhHHHHHhcCC-ccccCCc------c--ccccceeccccCC-ccccCChhh--cCcccEEECCCC-CCC
Confidence                     1246888888873 4555443      1  2468999999886 577788655  379999999986 566


Q ss_pred             cCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          286 ELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       286 ~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      .+|.    .+  .++|+.|++++| .++.+|..+.  .+|+.|++++|.
T Consensus       360 ~LP~----~l--p~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~N~  399 (754)
T PRK15370        360 VLPE----TL--PPTITTLDVSRN-ALTNLPENLP--AALQIMQASRNN  399 (754)
T ss_pred             cCCh----hh--cCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhccCC
Confidence            6663    11  368999999986 6778887664  468888888874

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.99  E-value=1.3e-11  Score=120.91  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=30.6

Q ss_pred             CCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079          298 IPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       298 l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~  334 (361)
                      +..|+.|++++ +.+..+| ..+..+..|++|+++|+.
T Consensus       382 ~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNk  418 (1081)
T KOG0618|consen  382 FKHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNK  418 (1081)
T ss_pred             ccceeeeeecc-cccccCCHHHHhchHHhHHHhcccch
Confidence            77899999998 6888888 567888999999999874

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.85  E-value=2.2e-09  Score=98.38  Aligned_cols=200  Identities=22%  Similarity=0.193  Sum_probs=112.0

Q ss_pred             hHHHHHhcCCCCCccEEEecccCCCC-CchhhhcCc---cCCeeeecCCCCCC-CCC----CCCCC-c-cceEecccccc
Q 018079          117 DKQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLA---NLRELNLSLCFNCE-HLP----QLGKL-P-LEKLQLKNLKS  185 (361)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~---~L~~L~l~~~~~~~-~l~----~l~~l-~-L~~L~l~~~~~  185 (361)
                      ...+...+..+++|++|+++++.... .+..+..+.   +|+.|++++|.... ..+    .+..+ + |+.|++++|. 
T Consensus        70 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-  148 (319)
T cd00116          70 LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-  148 (319)
T ss_pred             HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-
Confidence            34455666667888888888776542 334444333   38888888764221 111    13455 5 8888888765 


Q ss_pred             ceeec-ccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCC--
Q 018079          186 VKRVG-NEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLK--  261 (361)
Q Consensus       186 l~~l~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~--  261 (361)
                      ++... ..+...                +..+++|++|++.++. +..... .+  ...+..+++|+.|++++|. +.  
T Consensus       149 l~~~~~~~~~~~----------------~~~~~~L~~L~l~~n~-l~~~~~~~l--~~~l~~~~~L~~L~L~~n~-i~~~  208 (319)
T cd00116         149 LEGASCEALAKA----------------LRANRDLKELNLANNG-IGDAGIRAL--AEGLKANCNLEVLDLNNNG-LTDE  208 (319)
T ss_pred             CCchHHHHHHHH----------------HHhCCCcCEEECcCCC-CchHHHHHH--HHHHHhCCCCCEEeccCCc-cChH
Confidence            23111 111100                3356788888888753 331110 00  1123345788888888863 33  


Q ss_pred             ---ccchhccCCCCcceEeeccCCCcccC--CcccccccCCCCCccEEEEecCCCC----CccccccCCCCCCCeEEEeC
Q 018079          262 ---ALPDYLLQMTVLQNLRIFFCENMEEL--PILEDHRTTDIPRLSSLRIGYCPKL----KVLPDCLLRTTTLQKLTIWG  332 (361)
Q Consensus       262 ---~l~~~~~~l~~L~~L~l~~c~~l~~l--p~L~~L~l~~l~~L~~L~l~~c~~l----~~l~~~l~~l~~L~~L~l~~  332 (361)
                         .+...+..+++|+.|++++|+ +...  ..+...-....+.|++|++.+|...    ..+...+..+++|+++++++
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~  287 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG  287 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence               233345557888888888863 3220  0000000012468889999887432    22445566678899999988


Q ss_pred             Cccchh
Q 018079          333 CPLLEN  338 (361)
Q Consensus       333 c~~l~~  338 (361)
                      +.--.+
T Consensus       288 N~l~~~  293 (319)
T cd00116         288 NKFGEE  293 (319)
T ss_pred             CCCcHH
Confidence            865443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.84  E-value=2.6e-10  Score=102.98  Aligned_cols=254  Identities=20%  Similarity=0.148  Sum_probs=134.2

Q ss_pred             eeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCC
Q 018079           50 ECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLN  129 (361)
Q Consensus        50 ~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~  129 (361)
                      ++.+.++.....  ........+++++++|++.++....                            .....+.-..+++
T Consensus       142 ~LSlrG~r~v~~--sslrt~~~~CpnIehL~l~gc~~iT----------------------------d~s~~sla~~C~~  191 (483)
T KOG4341|consen  142 ELSLRGCRAVGD--SSLRTFASNCPNIEHLALYGCKKIT----------------------------DSSLLSLARYCRK  191 (483)
T ss_pred             cccccccccCCc--chhhHHhhhCCchhhhhhhcceecc----------------------------HHHHHHHHHhcch
Confidence            455555444332  1222234567777777777665432                            2233444456678


Q ss_pred             ccEEEecccCCCC---CchhhhcCccCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeeccccccc--CCCC
Q 018079          130 VEELWIIFYGGNI---FPKWLTSLANLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGI--EESS  200 (361)
Q Consensus       130 L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~--~~~~  200 (361)
                      ++++++..|...+   +-.....+++|++|+++||+.+..  +.. ..... ++.+...||..++.-.......  ..+-
T Consensus       192 l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~  271 (483)
T KOG4341|consen  192 LRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEIL  271 (483)
T ss_pred             hhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhh
Confidence            8888888876544   111223688888888888876653  222 22333 5555555554322100000000  0000


Q ss_pred             CCC------CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhcc--CCCC
Q 018079          201 EDG------PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLL--QMTV  272 (361)
Q Consensus       201 ~~~------~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~~  272 (361)
                      .++      +++...+..-.++..|+.|+.++|....+.+.    ...-++.++|+.+.+.+|.+++...+.+.  +++.
T Consensus       272 ~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l----~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~  347 (483)
T KOG4341|consen  272 KLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVL----WALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH  347 (483)
T ss_pred             ccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHH----HHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence            000      00111111112345566666666665554443    22334566667776666666555444332  2666


Q ss_pred             cceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcc-----ccccCCCCCCCeEEEeCCccchhh
Q 018079          273 LQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVL-----PDCLLRTTTLQKLTIWGCPLLENR  339 (361)
Q Consensus       273 L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l-----~~~l~~l~~L~~L~l~~c~~l~~~  339 (361)
                      |+.+++.+|..+..- .|..+. .+|+.|+++.++.|..+++-     ...-..+..|..+.+.+||.+.+.
T Consensus       348 Le~l~~e~~~~~~d~-tL~sls-~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~  417 (483)
T KOG4341|consen  348 LERLDLEECGLITDG-TLASLS-RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDA  417 (483)
T ss_pred             hhhhcccccceehhh-hHhhhc-cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHH
Confidence            666666666544332 122222 23889999999988877664     233345677889999999988764

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.83  E-value=1.8e-10  Score=92.12  Aligned_cols=153  Identities=17%  Similarity=0.047  Sum_probs=109.8

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ   82 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~   82 (361)
                      .|.++.+ ++..+|+.|+.+.+|+.|++++.....-...+..++   ++++.++..  +--...+..++.++-|+.|++.
T Consensus        37 rLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~---klr~lnvgm--nrl~~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   37 RLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLP---KLRILNVGM--NRLNILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhch---hhhheecch--hhhhcCccccCCCchhhhhhcc
Confidence            4667888 999999999999999999996554442233444443   444444321  1112345568899999999999


Q ss_pred             ecCCCCC-CcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCC
Q 018079           83 FGGKDED-WRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLC  161 (361)
Q Consensus        83 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~  161 (361)
                      +|..... -..-+-..+.++-+++.|++       ..-++..++++.+||.|.+.++...++|..++.+..|+.|.+.++
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dnd-------fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDND-------FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCC-------cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence            8765321 12334455667778888886       666788888999999999998888889999998999999999885


Q ss_pred             CCCCCCCC
Q 018079          162 FNCEHLPQ  169 (361)
Q Consensus       162 ~~~~~l~~  169 (361)
                       .+..+|+
T Consensus       184 -rl~vlpp  190 (264)
T KOG0617|consen  184 -RLTVLPP  190 (264)
T ss_pred             -eeeecCh
Confidence             5666664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.73  E-value=1.5e-08  Score=92.92  Aligned_cols=221  Identities=20%  Similarity=0.136  Sum_probs=125.5

Q ss_pred             HHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC--
Q 018079           65 AERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI--  142 (361)
Q Consensus        65 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--  142 (361)
                      .....+.++++|++|+++.+......                          ...+...... ++|++|++++|....  
T Consensus        72 ~~~~~l~~~~~L~~L~l~~~~~~~~~--------------------------~~~~~~l~~~-~~L~~L~ls~~~~~~~~  124 (319)
T cd00116          72 SLLQGLTKGCGLQELDLSDNALGPDG--------------------------CGVLESLLRS-SSLQELKLNNNGLGDRG  124 (319)
T ss_pred             HHHHHHHhcCceeEEEccCCCCChhH--------------------------HHHHHHHhcc-CcccEEEeeCCccchHH
Confidence            34455777999999999887653200                          1222222233 679999998876542  


Q ss_pred             ---CchhhhcC-ccCCeeeecCCCCCC----CCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCc
Q 018079          143 ---FPKWLTSL-ANLRELNLSLCFNCE----HLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPS  212 (361)
Q Consensus       143 ---~p~~~~~l-~~L~~L~l~~~~~~~----~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  212 (361)
                         +...+..+ ++|+.|++++|.-..    .+.. +..++ |+.|++++|. +..........               .
T Consensus       125 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~---------------~  188 (319)
T cd00116         125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG-IGDAGIRALAE---------------G  188 (319)
T ss_pred             HHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHH---------------H
Confidence               22334456 788999998874321    1111 44566 8888888754 33211111100               0


Q ss_pred             ccCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCcc-chhc-c----CCCCcceEeeccCCCcc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKAL-PDYL-L----QMTVLQNLRIFFCENME  285 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~-~----~l~~L~~L~l~~c~~l~  285 (361)
                      +..+++|+.|++++|. +..... .+  ...+..+++|+.|++++|. ++.. ...+ .    ..+.|++|++++|. ++
T Consensus       189 l~~~~~L~~L~L~~n~-i~~~~~~~l--~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~  263 (319)
T cd00116         189 LKANCNLEVLDLNNNG-LTDEGASAL--AETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-IT  263 (319)
T ss_pred             HHhCCCCCEEeccCCc-cChHHHHHH--HHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CC
Confidence            2356799999998864 322111 00  1234567889999998863 4431 1111 1    14789999999873 32


Q ss_pred             c--CCcccccccCCCCCccEEEEecCCCCCc----cccccCCC-CCCCeEEEeCCc
Q 018079          286 E--LPILEDHRTTDIPRLSSLRIGYCPKLKV----LPDCLLRT-TTLQKLTIWGCP  334 (361)
Q Consensus       286 ~--lp~L~~L~l~~l~~L~~L~l~~c~~l~~----l~~~l~~l-~~L~~L~l~~c~  334 (361)
                      .  ...+.. .+..+++|+.++++++..-..    +...+... +.|+.+++.+.|
T Consensus       264 ~~~~~~l~~-~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         264 DDGAKDLAE-VLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             cHHHHHHHH-HHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            0  000000 223357889999988644322    34445555 678888887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=2.1e-08  Score=102.51  Aligned_cols=176  Identities=23%  Similarity=0.190  Sum_probs=106.9

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCC----cccccceeceeEEcCCCCCCChHHHHHhhcCCCCCC
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGS----NTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNL   76 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~----~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L   76 (361)
                      ||+|+++++ .+.++|.++++|+.|++|++...+......    .+.+|+   .+.+..-.  ..........+.++++|
T Consensus       597 LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr---~L~l~~s~--~~~~~~~l~el~~Le~L  670 (889)
T KOG4658|consen  597 LRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR---VLRLPRSA--LSNDKLLLKELENLEHL  670 (889)
T ss_pred             hhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhccccc---EEEeeccc--cccchhhHHhhhcccch
Confidence            799999999 999999999999999999997665431121    133333   33332211  12223344456778888


Q ss_pred             ceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCc----cEEEecccCCCCCchhhhcCcc
Q 018079           77 LRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNV----EELWIIFYGGNIFPKWLTSLAN  152 (361)
Q Consensus        77 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~p~~~~~l~~  152 (361)
                      +.+......                               . .+.+.+....+|    +.+.+.++...+.+..+..+.+
T Consensus       671 ~~ls~~~~s-------------------------------~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~  718 (889)
T KOG4658|consen  671 ENLSITISS-------------------------------V-LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGN  718 (889)
T ss_pred             hhheeecch-------------------------------h-HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccC
Confidence            888775433                               1 222222222222    2334334444445566678899


Q ss_pred             CCeeeecCCCCCCCCC----C--CCC-Cc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEE
Q 018079          153 LRELNLSLCFNCEHLP----Q--LGK-LP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEI  224 (361)
Q Consensus       153 L~~L~l~~~~~~~~l~----~--l~~-l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L  224 (361)
                      |+.|.+.+|...+...    .  ... ++ +..+.+.+|.....+.+.                     ...|+|+.|.+
T Consensus       719 L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~---------------------~f~~~L~~l~l  777 (889)
T KOG4658|consen  719 LEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWL---------------------LFAPHLTSLSL  777 (889)
T ss_pred             cceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchh---------------------hccCcccEEEE
Confidence            9999999985543111    1  122 55 566666666655554432                     25689999999


Q ss_pred             cCCccchhhhh
Q 018079          225 DGMKELEEWNY  235 (361)
Q Consensus       225 ~~~~~l~~~~~  235 (361)
                      ..|...++...
T Consensus       778 ~~~~~~e~~i~  788 (889)
T KOG4658|consen  778 VSCRLLEDIIP  788 (889)
T ss_pred             ecccccccCCC
Confidence            99988776554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=3.1e-09  Score=92.27  Aligned_cols=166  Identities=19%  Similarity=0.186  Sum_probs=109.9

Q ss_pred             HHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeeecCCCCCCCCCC---CCCCc-cceEeccccccceeecccccc
Q 018079          121 LEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLG  195 (361)
Q Consensus       121 ~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~  195 (361)
                      ..-+..+.+|+.|.++|..-.. +...++.=.+|+.++++.|.+++....   +..+. |..|+++.|.-..+.......
T Consensus       203 ~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~  282 (419)
T KOG2120|consen  203 HGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA  282 (419)
T ss_pred             HHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence            3445677888888888866433 334455667899999999888775433   55666 888888887644433221111


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc-chhhhhhhccccccccCCCccEEEEecCCCCCc-cchhccCCCCc
Q 018079          196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE-LEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-LPDYLLQMTVL  273 (361)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L  273 (361)
                                        .--++|+.|+++||.. +...-.    ......+|+|..|++++|..++. .-..+..++.|
T Consensus       283 ------------------hise~l~~LNlsG~rrnl~~sh~----~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L  340 (419)
T KOG2120|consen  283 ------------------HISETLTQLNLSGYRRNLQKSHL----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL  340 (419)
T ss_pred             ------------------hhchhhhhhhhhhhHhhhhhhHH----HHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence                              1347889999998753 222211    12344799999999999987774 22234568999


Q ss_pred             ceEeeccCCCcccCCcccccccCCCCCccEEEEecCCC
Q 018079          274 QNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPK  311 (361)
Q Consensus       274 ~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~  311 (361)
                      ++|+++.|..+-  | =+.+.+...|+|..|++.+|-.
T Consensus       341 ~~lSlsRCY~i~--p-~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  341 QHLSLSRCYDII--P-ETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             eeeehhhhcCCC--h-HHeeeeccCcceEEEEeccccC
Confidence            999999997652  2 1233556678889999988743

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.54  E-value=3.5e-09  Score=95.19  Aligned_cols=28  Identities=29%  Similarity=0.358  Sum_probs=22.1

Q ss_pred             eeecCCCCcccccCcc-CCCccccceecce
Q 018079            3 SLLNFGTNSLKYMPIG-ISKLTSLRRLDKF   31 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~   31 (361)
                      .+++..| +|..+|++ |+.+.+||.|+++
T Consensus        71 eirLdqN-~I~~iP~~aF~~l~~LRrLdLS   99 (498)
T KOG4237|consen   71 EIRLDQN-QISSIPPGAFKTLHRLRRLDLS   99 (498)
T ss_pred             EEEeccC-CcccCChhhccchhhhceeccc
Confidence            4567777 88888876 8888889999883

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=8.6e-09  Score=89.56  Aligned_cols=160  Identities=24%  Similarity=0.322  Sum_probs=113.2

Q ss_pred             hhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC---Cc
Q 018079           68 LQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI---FP  144 (361)
Q Consensus        68 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~p  144 (361)
                      ..+..|.+|+.|.+.++..                              .+.+...+.+-.+|..|+++.|.+.+   ..
T Consensus       204 ~iLs~C~kLk~lSlEg~~L------------------------------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~  253 (419)
T KOG2120|consen  204 GILSQCSKLKNLSLEGLRL------------------------------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQ  253 (419)
T ss_pred             HHHHHHHhhhhcccccccc------------------------------CcHHHHHHhccccceeeccccccccchhHHH
Confidence            3456677777777777665                              44566778888999999999988765   22


Q ss_pred             hhhhcCccCCeeeecCCCCCCCCCC--CCCCc--cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCcc
Q 018079          145 KWLTSLANLRELNLSLCFNCEHLPQ--LGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLK  220 (361)
Q Consensus       145 ~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~  220 (361)
                      -.+.+++.|..|+++||....+...  +....  ++.|+++||.  ..+...-...               -...+|+|.
T Consensus       254 ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r--rnl~~sh~~t---------------L~~rcp~l~  316 (419)
T KOG2120|consen  254 LLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR--RNLQKSHLST---------------LVRRCPNLV  316 (419)
T ss_pred             HHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH--hhhhhhHHHH---------------HHHhCCcee
Confidence            2345899999999999966554433  44554  9999999875  2222110000               033789999


Q ss_pred             EEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch---hccCCCCcceEeeccC
Q 018079          221 SLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD---YLLQMTVLQNLRIFFC  281 (361)
Q Consensus       221 ~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~---~~~~l~~L~~L~l~~c  281 (361)
                      .|++++|..+..-.+     ..+..|+.|++|.+++|..+.  |.   .+...|+|.+|++.+|
T Consensus       317 ~LDLSD~v~l~~~~~-----~~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCF-----QEFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeccccccccCchHH-----HHHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence            999999988776443     345689999999999996442  33   3456899999999987

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.9e-08  Score=90.40  Aligned_cols=182  Identities=19%  Similarity=0.172  Sum_probs=88.4

Q ss_pred             HhcCCCCCccEEEecccCCCC---CchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccc
Q 018079          122 EALQPPLNVEELWIIFYGGNI---FPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLG  195 (361)
Q Consensus       122 ~~l~~l~~L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~  195 (361)
                      +....+++++.|+++.+-...   +-.....+++|+.|+++.+........  -..++ ++.|.++.|. +..-..... 
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~-  217 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWI-  217 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHH-
Confidence            344556677777777654322   222233677777777766422111111  23455 7777777664 221111111 


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc--hhccCCCCc
Q 018079          196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP--DYLLQMTVL  273 (361)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L  273 (361)
                                       +..||+|+.|.+.+.......      ......+..|++|++++.+ +-+.+  .-.+.++.|
T Consensus       218 -----------------~~~fPsl~~L~L~~N~~~~~~------~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  218 -----------------LLTFPSLEVLYLEANEIILIK------ATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGL  273 (505)
T ss_pred             -----------------HHhCCcHHHhhhhccccccee------cchhhhhhHHhhccccCCc-ccccccccccccccch
Confidence                             225677777766653211100      1122245567777776643 33333  234456666


Q ss_pred             ceEeeccCCCcccCCccccccc------CCCCCccEEEEecCCCCCccc--cccCCCCCCCeEEEeCCc
Q 018079          274 QNLRIFFCENMEELPILEDHRT------TDIPRLSSLRIGYCPKLKVLP--DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       274 ~~L~l~~c~~l~~lp~L~~L~l------~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~  334 (361)
                      ..|+++.|    .++++...+.      ..+++|+.|++.. +++...+  ..++.+++|+.+.+.+.+
T Consensus       274 ~~Lnls~t----gi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  274 NQLNLSST----GIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hhhhcccc----CcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhccccc
Confidence            66666654    1222222222      2266777777766 3443333  335555666666655443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.36  E-value=2.5e-08  Score=89.76  Aligned_cols=243  Identities=17%  Similarity=0.133  Sum_probs=136.1

Q ss_pred             CceeecCCCCccccc-CccCCCccccceecceeeecCCCCCcccccc---eec--eeEEcCCCCCCChHHHHHhhcCCCC
Q 018079            1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ---LRG--ECSIEGLCNVSHVDEAERLQLSNKK   74 (361)
Q Consensus         1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~---L~~--~l~l~~l~~~~~~~~~~~~~l~~l~   74 (361)
                      ||.||+++| +|+.+ |..|..+.+|-.|.++      ..++|++++   +.+  .++...+ +...........++.++
T Consensus        93 LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvly------g~NkI~~l~k~~F~gL~slqrLll-Nan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   93 LRRLDLSKN-NISFIAPDAFKGLASLLSLVLY------GNNKITDLPKGAFGGLSSLQRLLL-NANHINCIRQDALRDLP  164 (498)
T ss_pred             hceeccccc-chhhcChHhhhhhHhhhHHHhh------cCCchhhhhhhHhhhHHHHHHHhc-ChhhhcchhHHHHHHhh
Confidence            789999999 88877 5669999998888883      237778777   110  1111110 11122344566788999


Q ss_pred             CCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH------HHhcCCCCCccEEEecccCCCCCchhhh
Q 018079           75 NLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL------LEALQPPLNVEELWIIFYGGNIFPKWLT  148 (361)
Q Consensus        75 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~p~~~~  148 (361)
                      ++..|.+..|........++.....++-++++.+..-.+|..-...      +-..+......-..+........++. .
T Consensus       165 ~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~-k  243 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDAR-K  243 (498)
T ss_pred             hcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchh-h
Confidence            9999999988877777777777777777777765433333210000      00011111111111111111111110 0


Q ss_pred             cCccCCee---eecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEE
Q 018079          149 SLANLREL---NLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSL  222 (361)
Q Consensus       149 ~l~~L~~L---~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  222 (361)
                      ....++.+   ..+.|......|.  +..+| |+.|++++ +.++.+.+.++                   .+...++.|
T Consensus       244 f~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aF-------------------e~~a~l~eL  303 (498)
T KOG4237|consen  244 FLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAF-------------------EGAAELQEL  303 (498)
T ss_pred             hhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC-Cccchhhhhhh-------------------cchhhhhhh
Confidence            11112222   1223333333443  77888 88888886 55777666543                   256677777


Q ss_pred             EEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc-hhccCCCCcceEeec
Q 018079          223 EIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP-DYLLQMTVLQNLRIF  279 (361)
Q Consensus       223 ~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~  279 (361)
                      .+.+ ++++.+..     ..+.++..|+.|++.+ ++++.+. ..+..+.+|.+|++-
T Consensus       304 ~L~~-N~l~~v~~-----~~f~~ls~L~tL~L~~-N~it~~~~~aF~~~~~l~~l~l~  354 (498)
T KOG4237|consen  304 YLTR-NKLEFVSS-----GMFQGLSGLKTLSLYD-NQITTVAPGAFQTLFSLSTLNLL  354 (498)
T ss_pred             hcCc-chHHHHHH-----HhhhccccceeeeecC-CeeEEEecccccccceeeeeehc
Confidence            7766 45554443     4566777888888877 4666553 344557777777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.33  E-value=2.7e-07  Score=76.25  Aligned_cols=127  Identities=22%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             CCCCccEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079          126 PPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG  203 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  203 (361)
                      ...++++|++.++....+. .++ .+.+|+.|++++| .+..+..+..++ |+.|++++ +.++++...+          
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i~~~l----------   83 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSISEGL----------   83 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-CHHH----------
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCccccch----------
Confidence            4446899999998876653 344 5788999999996 777777788888 99999986 5566664322          


Q ss_pred             CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc----hhccCCCCcceEeec
Q 018079          204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP----DYLLQMTVLQNLRIF  279 (361)
Q Consensus       204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~----~~~~~l~~L~~L~l~  279 (361)
                               ...+|+|++|.+++ .++.++..    ...+..+|+|+.|++.++|- ..-+    ..+..+|+|+.|+-.
T Consensus        84 ---------~~~lp~L~~L~L~~-N~I~~l~~----l~~L~~l~~L~~L~L~~NPv-~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 ---------DKNLPNLQELYLSN-NKISDLNE----LEPLSSLPKLRVLSLEGNPV-CEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             ---------HHH-TT--EEE-TT-S---SCCC----CGGGGG-TT--EEE-TT-GG-GGSTTHHHHHHHH-TT-SEETTE
T ss_pred             ---------HHhCCcCCEEECcC-CcCCChHH----hHHHHcCCCcceeeccCCcc-cchhhHHHHHHHHcChhheeCCE
Confidence                     12588999999886 45554433    34556788899998887542 2221    123446777776654


Q ss_pred             c
Q 018079          280 F  280 (361)
Q Consensus       280 ~  280 (361)
                      .
T Consensus       149 ~  149 (175)
T PF14580_consen  149 D  149 (175)
T ss_dssp             E
T ss_pred             E
Confidence            3

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.30  E-value=3.4e-07  Score=79.94  Aligned_cols=196  Identities=19%  Similarity=0.256  Sum_probs=117.0

Q ss_pred             CCCCccEEEecccCCCC---------CchhhhcCccCCeeeecCCCCCCCCCCCCC-Cc-cceEeccccccceeeccccc
Q 018079          126 PPLNVEELWIIFYGGNI---------FPKWLTSLANLRELNLSLCFNCEHLPQLGK-LP-LEKLQLKNLKSVKRVGNEFL  194 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~~---------~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~-l~-L~~L~l~~~~~l~~l~~~~~  194 (361)
                      -+.+|++|.+++..+.-         +|-.+..+++|+.+.++.|. ...+..+.. -| |.++.+.+.. +. +.+...
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~-~~~~l~  256 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQ-DVPSLL  256 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-cc-cccccc
Confidence            34568888888654311         34345578899999999883 333333333 34 8888877522 11 111111


Q ss_pred             ccCCCC-----CCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccC
Q 018079          195 GIEESS-----EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQ  269 (361)
Q Consensus       195 ~~~~~~-----~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~  269 (361)
                      ......     +.............-.+.|+++++++ +.+.++..      ++...|+++.|+++. +.+..+. .+..
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDE------SvKL~Pkir~L~lS~-N~i~~v~-nLa~  327 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTWQELTELDLSG-NLITQIDE------SVKLAPKLRRLILSQ-NRIRTVQ-NLAE  327 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchHhhhhhccccc-cchhhhhh------hhhhccceeEEeccc-cceeeeh-hhhh
Confidence            110000     01111111111223356788888887 45555543      556788889998887 4565554 3667


Q ss_pred             CCCcceEeeccCCCccc-------CCcccccccCC-----------CCCccEEEEecCCCCCccc--cccCCCCCCCeEE
Q 018079          270 MTVLQNLRIFFCENMEE-------LPILEDHRTTD-----------IPRLSSLRIGYCPKLKVLP--DCLLRTTTLQKLT  329 (361)
Q Consensus       270 l~~L~~L~l~~c~~l~~-------lp~L~~L~l~~-----------l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~  329 (361)
                      +++|+.|++++. .+.+       +.+.+.|.+++           +.+|..|++.+ +++..+-  .+++++|.|+.+.
T Consensus       328 L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  328 LPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             cccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHh
Confidence            888888888873 2322       33444554443           67889999988 5666654  5789999999999


Q ss_pred             EeCCcc
Q 018079          330 IWGCPL  335 (361)
Q Consensus       330 l~~c~~  335 (361)
                      +.++|-
T Consensus       406 L~~NPl  411 (490)
T KOG1259|consen  406 LTGNPL  411 (490)
T ss_pred             hcCCCc
Confidence            999974

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.21  E-value=1e-06  Score=72.86  Aligned_cols=108  Identities=20%  Similarity=0.333  Sum_probs=46.3

Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhcc-CCCCcceEeeccCCCcccCCccccc
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLL-QMTVLQNLRIFFCENMEELPILEDH  293 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~L~~L  293 (361)
                      .+.+|+.|+++++ .++.+.       ++..+++|+.|++++ +.++++...+. .+++|++|++++ +.+.++..+.  
T Consensus        40 ~l~~L~~L~Ls~N-~I~~l~-------~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~--  107 (175)
T PF14580_consen   40 TLDKLEVLDLSNN-QITKLE-------GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQELYLSN-NKISDLNELE--  107 (175)
T ss_dssp             T-TT--EEE-TTS---S--T-------T----TT--EEE--S-S---S-CHHHHHH-TT--EEE-TT-S---SCCCCG--
T ss_pred             hhcCCCEEECCCC-CCcccc-------CccChhhhhhcccCC-CCCCccccchHHhCCcCCEEECcC-CcCCChHHhH--
Confidence            3567777777764 344332       344577888888877 57777765543 478888888876 4555555443  


Q ss_pred             ccCCCCCccEEEEecCCCCCc---cccccCCCCCCCeEEEeCCc
Q 018079          294 RTTDIPRLSSLRIGYCPKLKV---LPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       294 ~l~~l~~L~~L~l~~c~~l~~---l~~~l~~l~~L~~L~l~~c~  334 (361)
                      .++.+++|+.|++.++|--..   -.-.+..+|+|+.||-....
T Consensus       108 ~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen  108 PLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             GGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             HHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence            334588888888888654322   11345678999988876554

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.12  E-value=2.3e-05  Score=72.81  Aligned_cols=64  Identities=22%  Similarity=0.320  Sum_probs=47.3

Q ss_pred             HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeec
Q 018079          122 EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVG  190 (361)
Q Consensus       122 ~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~  190 (361)
                      +.+..+.++++|++++|....+|.   -..+|+.|.+.+|..+..+|.  .+|  |+.|.+++|..+..+|
T Consensus        46 ~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~--~LP~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         46 PQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPG--SIPEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCc--hhhhhhhheEccCcccccccc
Confidence            345556889999999987666772   234699999999988877774  456  9999999887665443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.10  E-value=9e-08  Score=90.01  Aligned_cols=179  Identities=24%  Similarity=0.366  Sum_probs=101.9

Q ss_pred             HHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCccceEeccccccceeeccccccc
Q 018079          118 KQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLPLEKLQLKNLKSVKRVGNEFLGI  196 (361)
Q Consensus       118 ~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~L~~L~l~~~~~l~~l~~~~~~~  196 (361)
                      .++++.+..+..|..+.+..|..-.+|..++.+..|..++++.+ .+..+|. +..+||+.|.+++ ++++.+|++..  
T Consensus        88 ~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig--  163 (722)
T KOG0532|consen   88 SELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIG--  163 (722)
T ss_pred             ccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCcceeEEEec-CccccCCcccc--
Confidence            34444555555566666666655556777777777777777764 5555555 5555677777775 44666665532  


Q ss_pred             CCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceE
Q 018079          197 EESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNL  276 (361)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  276 (361)
                                        ..+.|..|+.+.+ .+..++.      .++.+.+|+.|.++. +++..+|.... .-.|..|
T Consensus       164 ------------------~~~tl~~ld~s~n-ei~slps------ql~~l~slr~l~vrR-n~l~~lp~El~-~LpLi~l  216 (722)
T KOG0532|consen  164 ------------------LLPTLAHLDVSKN-EIQSLPS------QLGYLTSLRDLNVRR-NHLEDLPEELC-SLPLIRL  216 (722)
T ss_pred             ------------------cchhHHHhhhhhh-hhhhchH------HhhhHHHHHHHHHhh-hhhhhCCHHHh-CCceeee
Confidence                              4566666666653 3444443      334566666666666 45666666666 3346666


Q ss_pred             eeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcccccc---CCCCCCCeEEEeCC
Q 018079          277 RIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCL---LRTTTLQKLTIWGC  333 (361)
Q Consensus       277 ~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l---~~l~~L~~L~l~~c  333 (361)
                      +++ |+++..+|-    ++.+++.|++|.+.++ -+.+=|..+   +...=.++|++.-|
T Consensus       217 DfS-cNkis~iPv----~fr~m~~Lq~l~LenN-PLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  217 DFS-CNKISYLPV----DFRKMRHLQVLQLENN-PLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ecc-cCceeecch----hhhhhhhheeeeeccC-CCCCChHHHHhccceeeeeeecchhc
Confidence            666 466666663    5555666666666653 333333211   11222355666555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.7e-06  Score=79.23  Aligned_cols=24  Identities=13%  Similarity=-0.040  Sum_probs=16.9

Q ss_pred             HHHhhcCCCCCCceEEEEecCCCC
Q 018079           65 AERLQLSNKKNLLRLHLQFGGKDE   88 (361)
Q Consensus        65 ~~~~~l~~l~~L~~L~l~~~~~~~   88 (361)
                      .....+..+++|+.|+++.|....
T Consensus       163 ~v~~i~eqLp~Le~LNls~Nrl~~  186 (505)
T KOG3207|consen  163 PVLKIAEQLPSLENLNLSSNRLSN  186 (505)
T ss_pred             HHHHHHHhcccchhcccccccccC
Confidence            334456788888888888776544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.02  E-value=9.4e-06  Score=75.37  Aligned_cols=68  Identities=21%  Similarity=0.403  Sum_probs=43.1

Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCC-ccccc
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP-ILEDH  293 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~L~~L  293 (361)
                      .+++++.|++++| .++.++.         ..++|+.|.+++|..++.+|..+  .++|+.|.+++|..+..+| +|+.|
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~---------LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L  117 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPV---------LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSL  117 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCC---------CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceE
Confidence            4567777777776 5555443         23357777777777777766543  3577777777776666666 34444


Q ss_pred             c
Q 018079          294 R  294 (361)
Q Consensus       294 ~  294 (361)
                      .
T Consensus       118 ~  118 (426)
T PRK15386        118 E  118 (426)
T ss_pred             E
Confidence            3

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.02  E-value=2.2e-07  Score=87.51  Aligned_cols=170  Identities=18%  Similarity=0.132  Sum_probs=110.1

Q ss_pred             eecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEe
Q 018079            4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF   83 (361)
Q Consensus         4 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~   83 (361)
                      .|++.+ .+.++|.++..+..|..+.++..........+..|.   .+.+.++..-+  ....+..++.| -|+.|-++.
T Consensus        80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~---~lt~l~ls~Nq--lS~lp~~lC~l-pLkvli~sN  152 (722)
T KOG0532|consen   80 ADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLE---ALTFLDLSSNQ--LSHLPDGLCDL-PLKVLIVSN  152 (722)
T ss_pred             hhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhh---HHHHhhhccch--hhcCChhhhcC-cceeEEEec
Confidence            456666 667777777777777777773222110111111111   22222211100  01122234444 466777776


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCC
Q 018079           84 GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFN  163 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~  163 (361)
                      |.                               ...+++.++...+|..|+.+.|...++|+.++.+..|+.|.+..+ .
T Consensus       153 Nk-------------------------------l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~  200 (722)
T KOG0532|consen  153 NK-------------------------------LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-H  200 (722)
T ss_pred             Cc-------------------------------cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-h
Confidence            66                               445677777778899999999998889999999999999999885 5


Q ss_pred             CCCCCC-CCCCccceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhh
Q 018079          164 CEHLPQ-LGKLPLEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN  234 (361)
Q Consensus       164 ~~~l~~-l~~l~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~  234 (361)
                      +..+|. +..|||..|+++ |+++.++|..|.                    .|..|++|-|.+ +-+..-+
T Consensus       201 l~~lp~El~~LpLi~lDfS-cNkis~iPv~fr--------------------~m~~Lq~l~Len-NPLqSPP  250 (722)
T KOG0532|consen  201 LEDLPEELCSLPLIRLDFS-CNKISYLPVDFR--------------------KMRHLQVLQLEN-NPLQSPP  250 (722)
T ss_pred             hhhCCHHHhCCceeeeecc-cCceeecchhhh--------------------hhhhheeeeecc-CCCCCCh
Confidence            666676 778889999999 788999998765                    788889988876 3344433

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.89  E-value=1e-05  Score=76.57  Aligned_cols=174  Identities=24%  Similarity=0.348  Sum_probs=97.1

Q ss_pred             cCCCCCccEEEecccCCCCCchhhhcCc-cCCeeeecCCCCCCCCC-CCCCCc-cceEeccccccceeecccccccCCCC
Q 018079          124 LQPPLNVEELWIIFYGGNIFPKWLTSLA-NLRELNLSLCFNCEHLP-QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESS  200 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~-~L~~L~l~~~~~~~~l~-~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~  200 (361)
                      +...+.++.|++.++....++...+.+. +|+.|+++++ .+..++ .++.++ |+.|+++++. +..++....      
T Consensus       112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~------  183 (394)
T COG4886         112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLS------  183 (394)
T ss_pred             hhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhhhhhhh------
Confidence            3344667777777777766777666664 7777777774 555654 466677 7777777633 455543211      


Q ss_pred             CCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeecc
Q 018079          201 EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFF  280 (361)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  280 (361)
                                    ..++|+.|++++ ..+..++.      .......|+++.+.+. .....+..+..+.++..+.+.+
T Consensus       184 --------------~~~~L~~L~ls~-N~i~~l~~------~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~  241 (394)
T COG4886         184 --------------NLSNLNNLDLSG-NKISDLPP------EIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSN  241 (394)
T ss_pred             --------------hhhhhhheeccC-CccccCch------hhhhhhhhhhhhhcCC-cceecchhhhhcccccccccCC
Confidence                          456666677666 34554444      1112333666666552 2334444445555555555333


Q ss_pred             CCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          281 CENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       281 c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                       ..+..++.    .++.+++++.|++.+ +.+++++. +..+.+++.+++++..
T Consensus       242 -n~~~~~~~----~~~~l~~l~~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         242 -NKLEDLPE----SIGNLSNLETLDLSN-NQISSISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             -ceeeeccc----hhccccccceecccc-cccccccc-ccccCccCEEeccCcc
Confidence             22222222    344455666666665 45566655 5566666666666643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=1.6e-05  Score=69.61  Aligned_cols=205  Identities=20%  Similarity=0.162  Sum_probs=122.8

Q ss_pred             CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh-hc
Q 018079           71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TS  149 (361)
Q Consensus        71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~~  149 (361)
                      ..+++++++++.||...+                            ..++..-+..+|.|+.|+++.+.-...-... ..
T Consensus        68 ~~~~~v~elDL~~N~iSd----------------------------WseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISD----------------------------WSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             HHhhhhhhhhcccchhcc----------------------------HHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence            346788999999998766                            7777788889999999999987653311111 25


Q ss_pred             CccCCeeeecCCCCCC--CCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEc
Q 018079          150 LANLRELNLSLCFNCE--HLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEID  225 (361)
Q Consensus       150 l~~L~~L~l~~~~~~~--~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~  225 (361)
                      ..+|+.|.+.+. .+.  .... +..+| ++.|+++. ++...+-.+......                ..+.+++++..
T Consensus       120 ~~nl~~lVLNgT-~L~w~~~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~----------------~s~~v~tlh~~  181 (418)
T KOG2982|consen  120 LKNLRVLVLNGT-GLSWTQSTSSLDDLPKVTELHMSD-NSLRQLNLDDNCIED----------------WSTEVLTLHQL  181 (418)
T ss_pred             ccceEEEEEcCC-CCChhhhhhhhhcchhhhhhhhcc-chhhhhccccccccc----------------cchhhhhhhcC
Confidence            678888888774 222  2222 66788 88888875 333443322211111                34567777777


Q ss_pred             CCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc--cCCCCcceEeeccCCCcccCCcccccccCCCCCccE
Q 018079          226 GMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL--LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSS  303 (361)
Q Consensus       226 ~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~  303 (361)
                      +|...  .+.++  -.....||++..+-+.+|+ +++....-  ..++++.-|+++. .++.++.++.  .+.++++|..
T Consensus       182 ~c~~~--~w~~~--~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~-~~idswasvD--~Ln~f~~l~d  253 (418)
T KOG2982|consen  182 PCLEQ--LWLNK--NKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGA-NNIDSWASVD--ALNGFPQLVD  253 (418)
T ss_pred             CcHHH--HHHHH--HhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcc-cccccHHHHH--HHcCCchhhe
Confidence            76422  22211  1123368999999998875 44443332  3366666666654 3444444332  2345777777


Q ss_pred             EEEecCCCCCcccc------ccCCCCCCCeEE
Q 018079          304 LRIGYCPKLKVLPD------CLLRTTTLQKLT  329 (361)
Q Consensus       304 L~l~~c~~l~~l~~------~l~~l~~L~~L~  329 (361)
                      |.+...|....+-.      -++++++++.|+
T Consensus       254 lRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  254 LRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             eeccCCcccccccCCcceEEEEeeccceEEec
Confidence            77777666555431      245566666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.79  E-value=1.2e-05  Score=71.70  Aligned_cols=195  Identities=20%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             HHHhcCCCCCccEEEecccCCC-CCc----hhhhcCccCCeeeecCCCCCCCCCC---------------CCCCc-cceE
Q 018079          120 LLEALQPPLNVEELWIIFYGGN-IFP----KWLTSLANLRELNLSLCFNCEHLPQ---------------LGKLP-LEKL  178 (361)
Q Consensus       120 ~~~~l~~l~~L~~L~l~~~~~~-~~p----~~~~~l~~L~~L~l~~~~~~~~l~~---------------l~~l~-L~~L  178 (361)
                      +.+++..+++|+++++++|..- ..+    ..+.++..|++|.+.+| ++.....               .+.-+ |+.+
T Consensus        84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~  162 (382)
T KOG1909|consen   84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVF  162 (382)
T ss_pred             HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEE
Confidence            3455666677888888776432 222    23346777777777776 3332111               11222 5555


Q ss_pred             eccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCC
Q 018079          179 QLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCN  258 (361)
Q Consensus       179 ~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  258 (361)
                      ...+ +.+..-+.......               +...|.|+.+.+....--..-...+  ...+..+|.|+.|++++. 
T Consensus       163 i~~r-Nrlen~ga~~~A~~---------------~~~~~~leevr~~qN~I~~eG~~al--~eal~~~~~LevLdl~DN-  223 (382)
T KOG1909|consen  163 ICGR-NRLENGGATALAEA---------------FQSHPTLEEVRLSQNGIRPEGVTAL--AEALEHCPHLEVLDLRDN-  223 (382)
T ss_pred             Eeec-cccccccHHHHHHH---------------HHhccccceEEEecccccCchhHHH--HHHHHhCCcceeeecccc-
Confidence            5543 22232222211110               3344666666665422111100000  134556777777777663 


Q ss_pred             CCC-----ccchhccCCCCcceEeeccCCCccc--CCcccccccCCCCCccEEEEecCCCCCc----cccccCCCCCCCe
Q 018079          259 KLK-----ALPDYLLQMTVLQNLRIFFCENMEE--LPILEDHRTTDIPRLSSLRIGYCPKLKV----LPDCLLRTTTLQK  327 (361)
Q Consensus       259 ~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~--lp~L~~L~l~~l~~L~~L~l~~c~~l~~----l~~~l~~l~~L~~  327 (361)
                      -++     .+...+..+++|+.+++++|..=..  ..-.+.+. ...++|++|.+.+|..-..    +...+...|.|..
T Consensus       224 tft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~k  302 (382)
T KOG1909|consen  224 TFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEK  302 (382)
T ss_pred             hhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHH
Confidence            332     1222334466677777777621100  00000000 0156777777777532211    2223444677778


Q ss_pred             EEEeCCcc
Q 018079          328 LTIWGCPL  335 (361)
Q Consensus       328 L~l~~c~~  335 (361)
                      |++.+|..
T Consensus       303 LnLngN~l  310 (382)
T KOG1909|consen  303 LNLNGNRL  310 (382)
T ss_pred             hcCCcccc
Confidence            88877754

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.76  E-value=3.2e-05  Score=73.19  Aligned_cols=46  Identities=33%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             hcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC
Q 018079          123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ  169 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~  169 (361)
                      .+..+++|+.|++.++....+|...+..+.|..|+++++ .+..+|.
T Consensus       158 ~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~  203 (394)
T COG4886         158 PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPP  203 (394)
T ss_pred             hhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCch
Confidence            344444444444444444444443334444444444442 3444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.70  E-value=6e-05  Score=50.81  Aligned_cols=39  Identities=21%  Similarity=0.395  Sum_probs=24.9

Q ss_pred             cCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079          295 TTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       295 l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~  334 (361)
                      +.++++|++|++++ +.++.++ ..+.++++|++|++++|+
T Consensus        21 f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   21 FSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSS
T ss_pred             HcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCc
Confidence            33455566666654 4556666 466777888888887764

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.70  E-value=1.1e-05  Score=78.23  Aligned_cols=94  Identities=26%  Similarity=0.250  Sum_probs=45.8

Q ss_pred             HHhcCCCCCccEEEeccc-CCCC-Cc----hhhhcCccCCeeeecCCCCCCCCCC--CC-CCc-cceEeccccccceeec
Q 018079          121 LEALQPPLNVEELWIIFY-GGNI-FP----KWLTSLANLRELNLSLCFNCEHLPQ--LG-KLP-LEKLQLKNLKSVKRVG  190 (361)
Q Consensus       121 ~~~l~~l~~L~~L~l~~~-~~~~-~p----~~~~~l~~L~~L~l~~~~~~~~l~~--l~-~l~-L~~L~l~~~~~l~~l~  190 (361)
                      .......++|+.|++.++ .... .+    .....+++|+.+++++|..+.+...  +. ..+ |+.|.+.+|..++...
T Consensus       207 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~g  286 (482)
T KOG1947|consen  207 DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEG  286 (482)
T ss_pred             HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhH
Confidence            344455566666666652 2111 11    1112446666666666654443221  22 245 6666666565433322


Q ss_pred             ccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079          191 NEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE  232 (361)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~  232 (361)
                      ....                  ...+++|++|++++|..+.+
T Consensus       287 l~~i------------------~~~~~~L~~L~l~~c~~~~d  310 (482)
T KOG1947|consen  287 LVSI------------------AERCPSLRELDLSGCHGLTD  310 (482)
T ss_pred             HHHH------------------HHhcCcccEEeeecCccchH
Confidence            2222                  22566677777776666533

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.65  E-value=8e-06  Score=71.52  Aligned_cols=22  Identities=9%  Similarity=0.243  Sum_probs=12.9

Q ss_pred             cCccCCCccccceecceeeecC
Q 018079           15 MPIGISKLTSLRRLDKFVVGGG   36 (361)
Q Consensus        15 lP~~i~~L~~L~~L~l~~~~~~   36 (361)
                      +|-.+.-+++|..+.++.++..
T Consensus       206 l~f~l~~f~~l~~~~~s~~~~~  227 (490)
T KOG1259|consen  206 LSFNLNAFRNLKTLKFSALSTE  227 (490)
T ss_pred             cccchHHhhhhheeeeeccchh
Confidence            4444555667777776665544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.54  E-value=1.6e-06  Score=84.11  Aligned_cols=199  Identities=24%  Similarity=0.272  Sum_probs=93.6

Q ss_pred             hHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeeccccc
Q 018079          117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFL  194 (361)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~  194 (361)
                      ...+...+++...|+.+..-+-+..+ |-.+..|..|++|.+.+|+ +.....+..+.  |++|.-.+  ++..+...+.
T Consensus        76 Lq~i~d~lqkt~~lkl~~~pa~~pt~-pi~ifpF~sLr~LElrg~~-L~~~~GL~~lr~qLe~LIC~~--Sl~Al~~v~a  151 (1096)
T KOG1859|consen   76 LQRILDFLQKTKVLKLLPSPARDPTE-PISIFPFRSLRVLELRGCD-LSTAKGLQELRHQLEKLICHN--SLDALRHVFA  151 (1096)
T ss_pred             HHHHHHHHhhheeeeecccCCCCCCC-CceeccccceeeEEecCcc-hhhhhhhHHHHHhhhhhhhhc--cHHHHHHHHH
Confidence            44455556555555555444333222 5556688999999999883 33222233333  55543221  1122211111


Q ss_pred             ccCCCCCCCCC---------CC----CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCC
Q 018079          195 GIEESSEDGPS---------SS----SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLK  261 (361)
Q Consensus       195 ~~~~~~~~~~~---------~~----~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~  261 (361)
                      .++......+.         +.    ..-.++.-+|.|+.|+|++ +++.+...       +..+++|+.|+|++ +.++
T Consensus       152 scggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~~-------Lr~l~~LkhLDlsy-N~L~  222 (1096)
T KOG1859|consen  152 SCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVDN-------LRRLPKLKHLDLSY-NCLR  222 (1096)
T ss_pred             HhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhHH-------HHhccccccccccc-chhc
Confidence            11110000000         00    0000123346666777665 34443322       34577777777766 4666


Q ss_pred             ccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc--cccCCCCCCCeEEEeCCcc
Q 018079          262 ALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP--DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       262 ~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~~  335 (361)
                      .+|..-..--.|+.|.+++ +.++.+-     .+.++.+|+.||++++ -+....  .-+..+..|..|++.|+|-
T Consensus       223 ~vp~l~~~gc~L~~L~lrn-N~l~tL~-----gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  223 HVPQLSMVGCKLQLLNLRN-NALTTLR-----GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cccccchhhhhheeeeecc-cHHHhhh-----hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            6664322222377777776 2333322     3334566666666652 333222  2233445666667766653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.53  E-value=0.00013  Score=49.20  Aligned_cols=58  Identities=28%  Similarity=0.463  Sum_probs=36.2

Q ss_pred             CCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccC
Q 018079          217 PKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFC  281 (361)
Q Consensus       217 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c  281 (361)
                      |+|++|+++++ ++..++.     ..+.++++|+.|++++ +.++.++. .+..+++|++|+++++
T Consensus         1 p~L~~L~l~~n-~l~~i~~-----~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPP-----DSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECT-----TTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCH-----HHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            46677777764 5555543     3555677777777775 35666654 3455677777777664

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.53  E-value=1.5e-05  Score=77.30  Aligned_cols=163  Identities=23%  Similarity=0.315  Sum_probs=98.5

Q ss_pred             CCCCccEEEecccCCCC---CchhhhcCccCCeeeecCC-CCCCCCC----C-CCCCc-cceEeccccccceeecccccc
Q 018079          126 PPLNVEELWIIFYGGNI---FPKWLTSLANLRELNLSLC-FNCEHLP----Q-LGKLP-LEKLQLKNLKSVKRVGNEFLG  195 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~~---~p~~~~~l~~L~~L~l~~~-~~~~~l~----~-l~~l~-L~~L~l~~~~~l~~l~~~~~~  195 (361)
                      ..+.|+.+.+.++....   +-+.....++|+.|++++| ......+    . ....+ ++.++++.|..+++.......
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            36788888888876554   2334447888999998873 3333222    1 23345 888888887765555444332


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc--cchhccCCCCc
Q 018079          196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA--LPDYLLQMTVL  273 (361)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~l~~L  273 (361)
                      .                  .+++|+.|.+.+|..+++...    ......+++|++|++++|..++.  +.....++++|
T Consensus       266 ~------------------~c~~L~~L~l~~c~~lt~~gl----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l  323 (482)
T KOG1947|consen  266 S------------------RCPNLETLSLSNCSNLTDEGL----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL  323 (482)
T ss_pred             h------------------hCCCcceEccCCCCccchhHH----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch
Confidence            2                  478999999888887654444    34556889999999999877643  33333446666


Q ss_pred             ceEeeccC---CCcccC--------C--cccccccCCCCCccEEEEecCC
Q 018079          274 QNLRIFFC---ENMEEL--------P--ILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       274 ~~L~l~~c---~~l~~l--------p--~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                      +.+.+..+   ..++.+        .  .+..+.+.+++.++.+.+..|.
T Consensus       324 ~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  324 RELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG  373 (482)
T ss_pred             hhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence            66554443   233221        1  2444444555555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.43  E-value=1.8e-06  Score=83.74  Aligned_cols=133  Identities=26%  Similarity=0.230  Sum_probs=65.8

Q ss_pred             CccCCCccccceecceeeecCCCCCcccccc--eeceeEEcCCCCCCChHHHHHhhcCCCC---CCceEEEEecCCCCCC
Q 018079           16 PIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRGECSIEGLCNVSHVDEAERLQLSNKK---NLLRLHLQFGGKDEDW   90 (361)
Q Consensus        16 P~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~~l~l~~l~~~~~~~~~~~~~l~~l~---~L~~L~l~~~~~~~~~   90 (361)
                      |-.|..+.+||.|.+..|... ...++.+|+  |++-++...++.+..+.......+++-.   .|..-+.++|.     
T Consensus       102 pi~ifpF~sLr~LElrg~~L~-~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~-----  175 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLS-TAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNR-----  175 (1096)
T ss_pred             CceeccccceeeEEecCcchh-hhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhh-----
Confidence            556777888888888666655 444555554  4422233333333322222222222211   23333444443     


Q ss_pred             cchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCC
Q 018079           91 RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQL  170 (361)
Q Consensus        91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l  170 (361)
                                                ...+-+++.-++.++.|++++|....+. .+..+++|++|+++++ .+..+|.+
T Consensus       176 --------------------------L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l  227 (1096)
T KOG1859|consen  176 --------------------------LVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQL  227 (1096)
T ss_pred             --------------------------HHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhcccccc
Confidence                                      2222334444555666666666544433 4455666666666663 45555554


Q ss_pred             CCCc--cceEeccc
Q 018079          171 GKLP--LEKLQLKN  182 (361)
Q Consensus       171 ~~l~--L~~L~l~~  182 (361)
                      +.-.  |..|.+.+
T Consensus       228 ~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  228 SMVGCKLQLLNLRN  241 (1096)
T ss_pred             chhhhhheeeeecc
Confidence            4333  55555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.42  E-value=7.3e-05  Score=66.86  Aligned_cols=198  Identities=19%  Similarity=0.164  Sum_probs=117.8

Q ss_pred             HhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-
Q 018079           67 RLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-  145 (361)
Q Consensus        67 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-  145 (361)
                      ...+.++++|+.++++.|....-      .                    ...+-+.+..+..|++|.+.+|+.-.... 
T Consensus        85 ~~aL~~~~~L~~ldLSDNA~G~~------g--------------------~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~  138 (382)
T KOG1909|consen   85 SKALLGCPKLQKLDLSDNAFGPK------G--------------------IRGLEELLSSCTDLEELYLNNCGLGPEAGG  138 (382)
T ss_pred             HHHHhcCCceeEeeccccccCcc------c--------------------hHHHHHHHHhccCHHHHhhhcCCCChhHHH
Confidence            34577888999999998876541      0                    34445556778899999999987543211 


Q ss_pred             -------------hhhcCccCCeeeecCCCCCCCCCC------CCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          146 -------------WLTSLANLRELNLSLCFNCEHLPQ------LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       146 -------------~~~~l~~L~~L~l~~~~~~~~l~~------l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                                   -++.-++|+.+....+ .+.+.+.      +...| |+.+.+.. +.|..-.......         
T Consensus       139 ~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~e---------  207 (382)
T KOG1909|consen  139 RLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAE---------  207 (382)
T ss_pred             HHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHH---------
Confidence                         1124567888887774 5554443      44567 88887764 2233222111111         


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-----chhc-cCCCCcceEeec
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-----PDYL-LQMTVLQNLRIF  279 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-----~~~~-~~l~~L~~L~l~  279 (361)
                            .+..+|+|+.|+|.+..--..-...+  ...+..+++|+.|++.+|. ++.-     ..-+ ...|+|+.+.+.
T Consensus       208 ------al~~~~~LevLdl~DNtft~egs~~L--akaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~  278 (382)
T KOG1909|consen  208 ------ALEHCPHLEVLDLRDNTFTLEGSVAL--AKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELA  278 (382)
T ss_pred             ------HHHhCCcceeeecccchhhhHHHHHH--HHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccC
Confidence                  15578999999998732111111111  2345578899999999994 4321     1112 237899999998


Q ss_pred             cCCCcccCC-cccccccCCCCCccEEEEecCCC
Q 018079          280 FCENMEELP-ILEDHRTTDIPRLSSLRIGYCPK  311 (361)
Q Consensus       280 ~c~~l~~lp-~L~~L~l~~l~~L~~L~l~~c~~  311 (361)
                      ++ .++.=. .--...+...+.|++|++.+|..
T Consensus       279 gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  279 GN-EITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            85 222100 00001233367888888888654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=0.00011  Score=73.78  Aligned_cols=110  Identities=22%  Similarity=0.259  Sum_probs=73.9

Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccc
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHR  294 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~  294 (361)
                      .||+|++|.+.+..-..+. +    .....+||+|..|+|+++ +++.+ .++.++++|+.|.+.+. .+++...+.  +
T Consensus       146 ~LPsL~sL~i~~~~~~~~d-F----~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~--~  215 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDD-F----SQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNL-EFESYQDLI--D  215 (699)
T ss_pred             hCcccceEEecCceecchh-H----HHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCC-CCCchhhHH--H
Confidence            6899999999984322222 1    123458999999999997 56666 68888999999999874 333333222  3


Q ss_pred             cCCCCCccEEEEecCCCCCc--cc----cccCCCCCCCeEEEeCCc
Q 018079          295 TTDIPRLSSLRIGYCPKLKV--LP----DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       295 l~~l~~L~~L~l~~c~~l~~--l~----~~l~~l~~L~~L~l~~c~  334 (361)
                      +-++++|+.||++.-.+...  +.    +.-.-+|.|+.||.++-.
T Consensus       216 LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd  261 (699)
T KOG3665|consen  216 LFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD  261 (699)
T ss_pred             HhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence            44578899999986444322  11    112347889999988654

>PLN03150 hypothetical protein; Provisional

Probab=97.28  E-value=0.00061  Score=68.30  Aligned_cols=108  Identities=17%  Similarity=0.125  Sum_probs=73.6

Q ss_pred             ccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCC
Q 018079          219 LKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDI  298 (361)
Q Consensus       219 L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l  298 (361)
                      ++.|+|.++.--..++.      .+..+++|+.|+++++.--..+|..+..+++|+.|+++++.--..+|.    .++++
T Consensus       420 v~~L~L~~n~L~g~ip~------~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~----~l~~L  489 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPN------DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE----SLGQL  489 (623)
T ss_pred             EEEEECCCCCccccCCH------HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch----HHhcC
Confidence            56667766432222322      455788889998888643347787888888899999888655456664    56678


Q ss_pred             CCccEEEEecCCCCCccccccCCC-CCCCeEEEeCCccc
Q 018079          299 PRLSSLRIGYCPKLKVLPDCLLRT-TTLQKLTIWGCPLL  336 (361)
Q Consensus       299 ~~L~~L~l~~c~~l~~l~~~l~~l-~~L~~L~l~~c~~l  336 (361)
                      ++|+.|++++|.....+|..+... .++..+++.+++.+
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhhccccCceEEecCCccc
Confidence            889999998876656788666542 45667777777643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.22  E-value=0.00024  Score=44.30  Aligned_cols=37  Identities=16%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCccccc
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRL   45 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L   45 (361)
                      |++|++++| .++.+|+++++|++|++|++       ..+.+..+
T Consensus         3 L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l-------~~N~i~~i   39 (44)
T PF12799_consen    3 LEELDLSNN-QITDLPPELSNLPNLETLNL-------SNNPISDI   39 (44)
T ss_dssp             -SEEEETSS-S-SSHGGHGTTCTTSSEEEE-------TSSCCSBE
T ss_pred             ceEEEccCC-CCcccCchHhCCCCCCEEEe-------cCCCCCCC
Confidence            789999999 99999999999999999999       55555544

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.12  E-value=0.0006  Score=42.47  Aligned_cols=41  Identities=32%  Similarity=0.258  Sum_probs=31.0

Q ss_pred             CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ  169 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~  169 (361)
                      ++|++|+++++....+|+.++.+++|+.|+++++ .+.+++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence            4688899998888888887888999999999886 5655554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.07  E-value=0.0018  Score=53.90  Aligned_cols=122  Identities=20%  Similarity=0.309  Sum_probs=80.4

Q ss_pred             cEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCC
Q 018079          131 EELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSS  208 (361)
Q Consensus       131 ~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~  208 (361)
                      +.+++.+..+...-. ++ ...+...++++++ .+..++.+..++ |++|.+++ +.|+.+.+...              
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdN-dl~~l~~lp~l~rL~tLll~n-NrIt~I~p~L~--------------   84 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDN-DLRKLDNLPHLPRLHTLLLNN-NRITRIDPDLD--------------   84 (233)
T ss_pred             cccccccccccchhh-ccccccccceeccccc-chhhcccCCCccccceEEecC-Ccceeeccchh--------------
Confidence            345555554422211 22 3456778888885 677777777888 99999986 66788776542              


Q ss_pred             CCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch----hccCCCCcceEeecc
Q 018079          209 SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----YLLQMTVLQNLRIFF  280 (361)
Q Consensus       209 ~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l~~  280 (361)
                           ..+|+|++|.+.+ +++.++..    ...+..||+|++|.+-+.+ ++....    .+..+|+|+.|++.+
T Consensus        85 -----~~~p~l~~L~Ltn-Nsi~~l~d----l~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   85 -----TFLPNLKTLILTN-NSIQELGD----LDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             -----hhccccceEEecC-cchhhhhh----cchhccCCccceeeecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence                 2678999999987 45555544    4556689999999998843 333221    234477777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.05  E-value=9.9e-05  Score=70.34  Aligned_cols=111  Identities=23%  Similarity=0.283  Sum_probs=75.7

Q ss_pred             hHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccc
Q 018079          117 DKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLG  195 (361)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~  195 (361)
                      .......+..+.+|..|++.++....+...+..+++|++|+++++ .++.+..+..++ |+.|++.++ .+..+..    
T Consensus        84 i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N-~i~~~~~----  157 (414)
T KOG0531|consen   84 IAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGN-LISDISG----  157 (414)
T ss_pred             hhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccC-cchhccC----
Confidence            344455678888899999998887666654677889999999984 788888888888 999998874 3554432    


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEec
Q 018079          196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSS  256 (361)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~  256 (361)
                                       +..+++|+.+++.++. ...+..    .. ...+.+++.+.+.+
T Consensus       158 -----------------~~~l~~L~~l~l~~n~-i~~ie~----~~-~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  158 -----------------LESLKSLKLLDLSYNR-IVDIEN----DE-LSELISLEELDLGG  195 (414)
T ss_pred             -----------------CccchhhhcccCCcch-hhhhhh----hh-hhhccchHHHhccC
Confidence                             2346777777777643 222211    00 24677777777766

>PLN03150 hypothetical protein; Provisional

Probab=96.89  E-value=0.0015  Score=65.48  Aligned_cols=82  Identities=18%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             ccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeE
Q 018079          249 LSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKL  328 (361)
Q Consensus       249 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L  328 (361)
                      ++.|++.++.--..+|..+..+++|+.|+++++.--..+|.    .++.+++|+.|++++|.....+|+.+.++++|+.|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            67788877644347888889999999999999755456775    56779999999999976666899999999999999


Q ss_pred             EEeCCc
Q 018079          329 TIWGCP  334 (361)
Q Consensus       329 ~l~~c~  334 (361)
                      ++++|.
T Consensus       496 ~Ls~N~  501 (623)
T PLN03150        496 NLNGNS  501 (623)
T ss_pred             ECcCCc
Confidence            999885

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.84  E-value=0.00091  Score=67.32  Aligned_cols=58  Identities=28%  Similarity=0.319  Sum_probs=37.1

Q ss_pred             CCCCCccEEEecccCCCC--CchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccc
Q 018079          125 QPPLNVEELWIIFYGGNI--FPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNL  183 (361)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~  183 (361)
                      ..+|.|++|.+.+.....  +.....+|++|..||++++ ++..+..+.+++ |+.|.+.+.
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L~mrnL  205 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVLSMRNL  205 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHHhccCC
Confidence            345788888877644321  3333347888888888885 566665666777 777766653

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.71  E-value=0.0013  Score=57.86  Aligned_cols=166  Identities=17%  Similarity=0.126  Sum_probs=87.6

Q ss_pred             HHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhc-CCCCCccEEEecccCCC-
Q 018079           64 EAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEAL-QPPLNVEELWIIFYGGN-  141 (361)
Q Consensus        64 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~-  141 (361)
                      ..+...+.+|++|+.|+++.|...++                               ...+ .+..+|+.|-+.|..-. 
T Consensus        87 seI~~ile~lP~l~~LNls~N~L~s~-------------------------------I~~lp~p~~nl~~lVLNgT~L~w  135 (418)
T KOG2982|consen   87 SEIGAILEQLPALTTLNLSCNSLSSD-------------------------------IKSLPLPLKNLRVLVLNGTGLSW  135 (418)
T ss_pred             HHHHHHHhcCccceEeeccCCcCCCc-------------------------------cccCcccccceEEEEEcCCCCCh
Confidence            34556688999999999999986542                               1222 35678888888875432 


Q ss_pred             -CCchhhhcCccCCeeeecCCCCCC----CCCCCCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCccc
Q 018079          142 -IFPKWLTSLANLRELNLSLCFNCE----HLPQLGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVI  214 (361)
Q Consensus       142 -~~p~~~~~l~~L~~L~l~~~~~~~----~l~~l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~  214 (361)
                       ...+.+..++.++.|.++.++ ..    +-...... + +++++..+|.-......  ...                -.
T Consensus       136 ~~~~s~l~~lP~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~--~~l----------------~r  196 (418)
T KOG2982|consen  136 TQSTSSLDDLPKVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK--NKL----------------SR  196 (418)
T ss_pred             hhhhhhhhcchhhhhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHH--HhH----------------Hh
Confidence             133444567777777777651 11    11112222 2 66666665531111000  000                11


Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch--hccCCCCcceEeeccCCCcc
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD--YLLQMTVLQNLRIFFCENME  285 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~c~~l~  285 (361)
                      .||++..+-+..|+ +.....    +.+...+|.+-.|++.. +++.++..  .+..++.|..|.+++.+-..
T Consensus       197 ~Fpnv~sv~v~e~P-lK~~s~----ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGP-LKTESS----EKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hcccchheeeecCc-ccchhh----cccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccc
Confidence            46777666666653 222222    34455666666665544 23333321  23446666666666544443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.95  E-value=0.002  Score=61.51  Aligned_cols=115  Identities=28%  Similarity=0.235  Sum_probs=60.2

Q ss_pred             ecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEec
Q 018079            5 LNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFG   84 (361)
Q Consensus         5 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~   84 (361)
                      +++.+ .+...-..++.+++|..+++       ..+.+..+.   .                  .+..+.+|+.|+++.|
T Consensus        78 ~l~~n-~i~~~~~~l~~~~~l~~l~l-------~~n~i~~i~---~------------------~l~~~~~L~~L~ls~N  128 (414)
T KOG0531|consen   78 NLRQN-LIAKILNHLSKLKSLEALDL-------YDNKIEKIE---N------------------LLSSLVNLQVLDLSFN  128 (414)
T ss_pred             ccchh-hhhhhhcccccccceeeeec-------cccchhhcc---c------------------chhhhhcchheecccc
Confidence            34444 44443334677788888888       444444432   0                  0445667777777776


Q ss_pred             CCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCC
Q 018079           85 GKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNC  164 (361)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~  164 (361)
                      ....                                ...+..++.|+.|++.+|....+.. +..+..|+.+++.++ .+
T Consensus       129 ~I~~--------------------------------i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n-~i  174 (414)
T KOG0531|consen  129 KITK--------------------------------LEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYN-RI  174 (414)
T ss_pred             cccc--------------------------------ccchhhccchhhheeccCcchhccC-CccchhhhcccCCcc-hh
Confidence            6433                                2333444446666666665544332 233555666666654 33


Q ss_pred             CCCCC--CCCCc-cceEeccc
Q 018079          165 EHLPQ--LGKLP-LEKLQLKN  182 (361)
Q Consensus       165 ~~l~~--l~~l~-L~~L~l~~  182 (361)
                      ..+..  ...+. ++.+.+.+
T Consensus       175 ~~ie~~~~~~~~~l~~l~l~~  195 (414)
T KOG0531|consen  175 VDIENDELSELISLEELDLGG  195 (414)
T ss_pred             hhhhhhhhhhccchHHHhccC
Confidence            33333  24444 55555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.55  E-value=0.0052  Score=31.89  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=17.8

Q ss_pred             CceeecCCCCcccccCccCCCc
Q 018079            1 MRSLLNFGTNSLKYMPIGISKL   22 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L   22 (361)
                      |++|++++| .++.+|+++++|
T Consensus         2 L~~Ldls~n-~l~~ip~~~~~l   22 (22)
T PF00560_consen    2 LEYLDLSGN-NLTSIPSSFSNL   22 (22)
T ss_dssp             ESEEEETSS-EESEEGTTTTT-
T ss_pred             ccEEECCCC-cCEeCChhhcCC
Confidence            689999999 999999887764

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.14  E-value=0.0014  Score=57.28  Aligned_cols=103  Identities=27%  Similarity=0.292  Sum_probs=69.3

Q ss_pred             CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCccccccc
Q 018079          216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRT  295 (361)
Q Consensus       216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l  295 (361)
                      +.+.++|+.++| .+.++..       ...+|.|+.|.++- ++++++. .+..|+.|++|++.. +.|.++-.|+  ++
T Consensus        18 l~~vkKLNcwg~-~L~DIsi-------c~kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~--YL   84 (388)
T KOG2123|consen   18 LENVKKLNCWGC-GLDDISI-------CEKMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRK-NCIESLDELE--YL   84 (388)
T ss_pred             HHHhhhhcccCC-CccHHHH-------HHhcccceeEEeec-cccccch-hHHHHHHHHHHHHHh-cccccHHHHH--HH
Confidence            557788888887 4665544       34688999999875 5676664 566789999999986 3444444333  56


Q ss_pred             CCCCCccEEEEecCCCCCccc-----cccCCCCCCCeEEEe
Q 018079          296 TDIPRLSSLRIGYCPKLKVLP-----DCLLRTTTLQKLTIW  331 (361)
Q Consensus       296 ~~l~~L~~L~l~~c~~l~~l~-----~~l~~l~~L~~L~l~  331 (361)
                      .++++|+.|++..+|=-..-+     ..+.-+|+|+.||=.
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCc
Confidence            678999999998755433322     235567777776533

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.00  E-value=0.0065  Score=50.63  Aligned_cols=67  Identities=21%  Similarity=0.421  Sum_probs=47.2

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc-hhccCCCCcceEeeccCCC
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP-DYLLQMTVLQNLRIFFCEN  283 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~  283 (361)
                      +..++.++.|.+.+|..+.+|..    +..-+..++|+.|++++|+.+++-. .++..+++|+.|.+++.+.
T Consensus       121 L~~l~~i~~l~l~~ck~~dD~~L----~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~  188 (221)
T KOG3864|consen  121 LRDLRSIKSLSLANCKYFDDWCL----ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY  188 (221)
T ss_pred             HhccchhhhheeccccchhhHHH----HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence            44678888888888888888876    3344467888888888888877542 2455567777776666433

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.76  E-value=0.038  Score=48.36  Aligned_cols=50  Identities=20%  Similarity=0.117  Sum_probs=35.4

Q ss_pred             hHHHHHhcCCCCCccEEEecccCC-CCCchh----hhcCccCCeeeecCCCCCCCC
Q 018079          117 DKQLLEALQPPLNVEELWIIFYGG-NIFPKW----LTSLANLRELNLSLCFNCEHL  167 (361)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~l~~~~~-~~~p~~----~~~l~~L~~L~l~~~~~~~~l  167 (361)
                      ...+..++-++|+|+..+++++.. .++|..    +.+-..|.+|.+.+| +++.+
T Consensus        81 L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~  135 (388)
T COG5238          81 LVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPI  135 (388)
T ss_pred             HHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCcc
Confidence            334467788999999999997753 445543    447788999999987 44433

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.69  E-value=0.0033  Score=52.37  Aligned_cols=44  Identities=18%  Similarity=0.267  Sum_probs=21.9

Q ss_pred             ccccCCCccEEEEecCCCCCccch-hcc-CCCCcceEeeccCCCcc
Q 018079          242 NISIMPRLSSLEVSSCNKLKALPD-YLL-QMTVLQNLRIFFCENME  285 (361)
Q Consensus       242 ~~~~l~~L~~L~l~~c~~l~~l~~-~~~-~l~~L~~L~l~~c~~l~  285 (361)
                      .+..++.++.|.+.+|.++.+... .++ -.++|+.|++++|+.|+
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            344566666667766665543321 111 14455555555554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.56  E-value=0.056  Score=45.25  Aligned_cols=91  Identities=23%  Similarity=0.226  Sum_probs=62.5

Q ss_pred             HHhcCCCCCccEEEecccCCCCCchhhh-cCccCCeeeecCC--CCCCCCCCCCCCc-cceEeccccccceeeccccccc
Q 018079          121 LEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLC--FNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGI  196 (361)
Q Consensus       121 ~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~--~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~  196 (361)
                      ...+..+++|.+|.+..+.+..+.+.+. -+++|+.|.+.++  ..+.++.++..+| |++|.+-+.+ ++....  ++.
T Consensus        57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~--YR~  133 (233)
T KOG1644|consen   57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKN--YRL  133 (233)
T ss_pred             cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccC--cee
Confidence            4556777889999999998877666665 5677999999886  2334666688889 9999887643 222110  100


Q ss_pred             CCCCCCCCCCCCCCCcccCCCCccEEEEcCCc
Q 018079          197 EESSEDGPSSSSSSPSVIAFPKLKSLEIDGMK  228 (361)
Q Consensus       197 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~  228 (361)
                      -              .+..+|+|++|+..+..
T Consensus       134 y--------------vl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  134 Y--------------VLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             E--------------EEEecCcceEeehhhhh
Confidence            0              04478999999987754

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=0.0015  Score=57.00  Aligned_cols=105  Identities=20%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      +.+.+.|+.-||+...+ +....|+.|+.|.++-+ .+..+.++.++. |+.|++.. +.|..+.+-++           
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvN-kIssL~pl~rCtrLkElYLRk-N~I~sldEL~Y-----------   83 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVN-KISSLAPLQRCTRLKELYLRK-NCIESLDELEY-----------   83 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeecc-ccccchhHHHHHHHHHHHHHh-cccccHHHHHH-----------
Confidence            45677788777765433 23458999999999984 788888888888 99998875 44666665554           


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEE
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLE  253 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~  253 (361)
                             +.++|+|++|.|...+.......... ...+..+|+|+.|+
T Consensus        84 -------LknlpsLr~LWL~ENPCc~~ag~nYR-~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   84 -------LKNLPSLRTLWLDENPCCGEAGQNYR-RKVLRVLPNLKKLD  123 (388)
T ss_pred             -------HhcCchhhhHhhccCCcccccchhHH-HHHHHHcccchhcc
Confidence                   55889999999986443332221000 12345688888885

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.84  E-value=0.028  Score=48.77  Aligned_cols=14  Identities=29%  Similarity=0.389  Sum_probs=6.7

Q ss_pred             CCCCccEEEEcCCc
Q 018079          215 AFPKLKSLEIDGMK  228 (361)
Q Consensus       215 ~~~~L~~L~L~~~~  228 (361)
                      .+++|..|++..|.
T Consensus       114 ~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  114 ELENLKSLDLFNCS  127 (260)
T ss_pred             hhcchhhhhcccCC
Confidence            44445555554443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=93.54  E-value=0.037  Score=28.60  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=13.6

Q ss_pred             CccEEEEecCCCCCccccccCC
Q 018079          300 RLSSLRIGYCPKLKVLPDCLLR  321 (361)
Q Consensus       300 ~L~~L~l~~c~~l~~l~~~l~~  321 (361)
                      +|+.|++++| .++.+|+.+++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            4677777776 66677765543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.06  E-value=0.063  Score=47.07  Aligned_cols=200  Identities=20%  Similarity=0.124  Sum_probs=110.4

Q ss_pred             hHHHHHhcCCCCCccEEEecccCCCC-Cchhh----hcCccCCeeeecCCCCCC---CCC--------CCCCCc-cceEe
Q 018079          117 DKQLLEALQPPLNVEELWIIFYGGNI-FPKWL----TSLANLRELNLSLCFNCE---HLP--------QLGKLP-LEKLQ  179 (361)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~----~~l~~L~~L~l~~~~~~~---~l~--------~l~~l~-L~~L~  179 (361)
                      .+.+.+.+..+..+..++++|+-+.+ -..|+    .+-.+|+..++++..--.   .++        .+..+| |+..+
T Consensus        19 vk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~   98 (388)
T COG5238          19 VKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVD   98 (388)
T ss_pred             hhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeee
Confidence            56667777778889999999876543 33343    355677777776542111   111        244567 77777


Q ss_pred             ccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc-------cccccccCCCccEE
Q 018079          180 LKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT-------RKENISIMPRLSSL  252 (361)
Q Consensus       180 l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~-------~~~~~~~l~~L~~L  252 (361)
                      +++..--...++.....                ++....|++|.+.+|.--.....+++       .......-|.|+.+
T Consensus        99 LSDNAfg~~~~e~L~d~----------------is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v  162 (388)
T COG5238          99 LSDNAFGSEFPEELGDL----------------ISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV  162 (388)
T ss_pred             ccccccCcccchHHHHH----------------HhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence            77532111222211110                34567888888887542111111111       11223356778888


Q ss_pred             EEecCCCCCccchh-----ccCCCCcceEeeccCCCcc--cCCcccccccCCCCCccEEEEecCCCCCc----cccccCC
Q 018079          253 EVSSCNKLKALPDY-----LLQMTVLQNLRIFFCENME--ELPILEDHRTTDIPRLSSLRIGYCPKLKV----LPDCLLR  321 (361)
Q Consensus       253 ~l~~c~~l~~l~~~-----~~~l~~L~~L~l~~c~~l~--~lp~L~~L~l~~l~~L~~L~l~~c~~l~~----l~~~l~~  321 (361)
                      ...+ +++..-|..     +..-..|+++.+... .++  .+..|-.+.+..+.+|+.|++.++.....    +...+..
T Consensus       163 icgr-NRlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~  240 (388)
T COG5238         163 ICGR-NRLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE  240 (388)
T ss_pred             Eecc-chhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc
Confidence            6655 455544322     122246777777652 221  12233334455588999999988533211    3355667


Q ss_pred             CCCCCeEEEeCCc
Q 018079          322 TTTLQKLTIWGCP  334 (361)
Q Consensus       322 l~~L~~L~l~~c~  334 (361)
                      ++.|.+|.+.+|-
T Consensus       241 W~~lrEL~lnDCl  253 (388)
T COG5238         241 WNLLRELRLNDCL  253 (388)
T ss_pred             cchhhhccccchh
Confidence            7888999998884

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.81  E-value=0.037  Score=43.47  Aligned_cols=65  Identities=20%  Similarity=0.109  Sum_probs=38.5

Q ss_pred             HhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchh
Q 018079           67 RLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW  146 (361)
Q Consensus        67 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~  146 (361)
                      +..+.+..+|...+++.|...+.+.                              ....+++..++++++++....+|..
T Consensus        46 vy~l~~~~el~~i~ls~N~fk~fp~------------------------------kft~kf~t~t~lNl~~neisdvPeE   95 (177)
T KOG4579|consen   46 VYMLSKGYELTKISLSDNGFKKFPK------------------------------KFTIKFPTATTLNLANNEISDVPEE   95 (177)
T ss_pred             HHHHhCCceEEEEecccchhhhCCH------------------------------HHhhccchhhhhhcchhhhhhchHH
Confidence            3446667788888888887543221                              2223445556666666665556665


Q ss_pred             hhcCccCCeeeecCC
Q 018079          147 LTSLANLRELNLSLC  161 (361)
Q Consensus       147 ~~~l~~L~~L~l~~~  161 (361)
                      +..++.|+.|++..+
T Consensus        96 ~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   96 LAAMPALRSLNLRFN  110 (177)
T ss_pred             HhhhHHhhhcccccC
Confidence            556666666666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.45  E-value=0.15  Score=24.48  Aligned_cols=10  Identities=20%  Similarity=0.312  Sum_probs=4.2

Q ss_pred             CccEEEEecC
Q 018079          300 RLSSLRIGYC  309 (361)
Q Consensus       300 ~L~~L~l~~c  309 (361)
                      +|+.|++++|
T Consensus         2 ~L~~L~l~~n   11 (17)
T PF13504_consen    2 NLRTLDLSNN   11 (17)
T ss_dssp             T-SEEEETSS
T ss_pred             ccCEEECCCC
Confidence            3444444444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.33  E-value=0.028  Score=44.09  Aligned_cols=73  Identities=21%  Similarity=0.274  Sum_probs=56.1

Q ss_pred             HHHHHhcCCCCCccEEEecccCCCCCchhhh-cCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeeccc
Q 018079          118 KQLLEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNE  192 (361)
Q Consensus       118 ~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~  192 (361)
                      ......+.....|+..+++++....+|..+. .++.++.|++..+ .+.++|. +..+| |+.++++.. .+...++.
T Consensus        43 ~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N-~l~~~p~v  118 (177)
T KOG4579|consen   43 ADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFN-PLNAEPRV  118 (177)
T ss_pred             HHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccC-ccccchHH
Confidence            3444556666788889999999888887766 6778999999984 7888887 88999 999999864 34554543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=90.99  E-value=0.091  Score=45.66  Aligned_cols=109  Identities=20%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCC-CC-CccchhccCCCCcceEeeccCCCcccCCcccc
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCN-KL-KALPDYLLQMTVLQNLRIFFCENMEELPILED  292 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~-~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~  292 (361)
                      .+..|+.|++.++.-.+        ...+-.+|+|+.|.+++.. +. ..++.-+..+++|+++++++. .++.+.+++.
T Consensus        41 ~~~~le~ls~~n~gltt--------~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p  111 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTT--------LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP  111 (260)
T ss_pred             cccchhhhhhhccceee--------cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch
Confidence            56778888777654222        1123357889999998741 11 133333445799999999983 4433332221


Q ss_pred             cccCCCCCccEEEEecCCCCCccc----cccCCCCCCCeEEEeCCcc
Q 018079          293 HRTTDIPRLSSLRIGYCPKLKVLP----DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       293 L~l~~l~~L~~L~l~~c~~l~~l~----~~l~~l~~L~~L~l~~c~~  335 (361)
                        +..+++|..|++.+|.-.. +-    ..+.-+++|++++-..+..
T Consensus       112 --l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  112 --LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             --hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence              2235678888888876543 21    3455678888887776643

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.30  E-value=4.4  Score=31.08  Aligned_cols=103  Identities=14%  Similarity=0.224  Sum_probs=54.4

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILE  291 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~  291 (361)
                      +.++.+|+.+.+..  .+..+..     ..+..+++|+.+.+..  .+..++... ..+++++.+.+..  .+..++   
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~-----~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~---   73 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGE-----NAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIG---   73 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-T-----TTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE----
T ss_pred             HhCCCCCCEEEECC--CeeEeCh-----hhcccccccccccccc--cccccceeeeecccccccccccc--cccccc---
Confidence            44677888888863  3444332     4566788899998865  467776654 4476899988864  333333   


Q ss_pred             ccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeC
Q 018079          292 DHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWG  332 (361)
Q Consensus       292 ~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~  332 (361)
                      .-.+.++++|+.+.+..  .+..++ ..+.+. +|+.+.+.+
T Consensus        74 ~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   74 DNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccccCc--cccEEchhhhcCC-CceEEEECC
Confidence            22455578888888853  466666 456666 788887764

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.73  E-value=0.43  Score=25.62  Aligned_cols=18  Identities=22%  Similarity=0.571  Sum_probs=13.5

Q ss_pred             CCCCCeEEEeCCccchhh
Q 018079          322 TTTLQKLTIWGCPLLENR  339 (361)
Q Consensus       322 l~~L~~L~l~~c~~l~~~  339 (361)
                      +++|++|++++|+.+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            467888888888887754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=82.88  E-value=4.7  Score=30.90  Aligned_cols=83  Identities=17%  Similarity=0.238  Sum_probs=48.7

Q ss_pred             cccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cc
Q 018079          241 ENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DC  318 (361)
Q Consensus       241 ~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~  318 (361)
                      ..+..+++|+.+.+.+  .++.++... ..+++|+.+.+..  .+..++   .-.+.++++++.+.+.+  .+..++ ..
T Consensus         6 ~~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~---~~~F~~~~~l~~i~~~~--~~~~i~~~~   76 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIG---DNAFSNCKSLESITFPN--NLKSIGDNA   76 (129)
T ss_dssp             TTTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE----TTTTTT-TT-EEEEETS--TT-EE-TTT
T ss_pred             HHHhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccc---eeeeecccccccccccc--ccccccccc
Confidence            3456788999999864  466776654 4577999999876  244333   33566788899999964  566666 45


Q ss_pred             cCCCCCCCeEEEeC
Q 018079          319 LLRTTTLQKLTIWG  332 (361)
Q Consensus       319 l~~l~~L~~L~l~~  332 (361)
                      +..+++|+.+.+..
T Consensus        77 F~~~~~l~~i~~~~   90 (129)
T PF13306_consen   77 FSNCTNLKNIDIPS   90 (129)
T ss_dssp             TTT-TTECEEEETT
T ss_pred             ccccccccccccCc
Confidence            67799999999954

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 35/195 (17%)

Query: 143 FPKWLTSLANLRELNLSLCFNCEHLPQ-LGKL--PLEKLQLKNLKSVKRVGNEFLGIEES 199
            P  + SL  LREL++  C     LP+ L       E   L NL+S++        +   
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL--- 198

Query: 200 SEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRK-ENISIMPRLSSLEVSSCN 258
               P+S            L++L     K L+  N  ++     I  +P+L  L++  C 
Sbjct: 199 ----PAS---------IANLQNL-----KSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 259 KLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLR---IGYCPKLKVL 315
            L+  P        L+ L +  C N+  LP        DI RL+ L    +  C  L  L
Sbjct: 241 ALRNYPPIFGGRAPLKRLILKDCSNLLTLP-------LDIHRLTQLEKLDLRGCVNLSRL 293

Query: 316 PDCLLRTTTLQKLTI 330
           P  + +      + +
Sbjct: 294 PSLIAQLPANCIILV 308

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 41/199 (20%), Positives = 68/199 (34%), Gaps = 30/199 (15%)

Query: 143 FPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEESSED 202
            P  +   A L  L L+          L  LP     L  L+ +       L       +
Sbjct: 119 LPDTMQQFAGLETLTLARN-------PLRALPASIASLNRLRELSIRACPEL------TE 165

Query: 203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITR-KENISIMPRLSSLEVSSCNKLK 261
            P   +S+ +      L +L+      L      I     +I+ +  L SL++   + L 
Sbjct: 166 LPEPLASTDASGEHQGLVNLQ-----SLRLEWTGIRSLPASIANLQNLKSLKIR-NSPLS 219

Query: 262 ALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLR---IGYCPKLKVLPDC 318
           AL   +  +  L+ L +  C  +   P             + L+   +  C  L  LP  
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYP-------PIFGGRAPLKRLILKDCSNLLTLPLD 272

Query: 319 LLRTTTLQKLTIWGCPLLE 337
           + R T L+KL + GC  L 
Sbjct: 273 IHRLTQLEKLDLRGCVNLS 291

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 34/209 (16%)

Query: 143 FPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSV-------KRVGNEFLG 195
           +   L+        + +   +           +E    + LK+         + G   L 
Sbjct: 28  YHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALE 87

Query: 196 IEESSEDGPSSSSSSPSVIAFPKLKSL--EIDGMKELEEWNYRITRKENI-SIMPRLSSL 252
           +                      L     +   +  L+           +   M + + L
Sbjct: 88  LRSV------------------PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL 129

Query: 253 EV--SSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP--ILEDHRTTDIPRLSSLRIGY 308
           E    + N L+ALP  +  +  L+ L I  C  + ELP  +     + +   L +L+   
Sbjct: 130 ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 309 --CPKLKVLPDCLLRTTTLQKLTIWGCPL 335
                ++ LP  +     L+ L I   PL
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 36/168 (21%), Positives = 59/168 (35%), Gaps = 33/168 (19%)

Query: 139 GGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEE 198
                      L NL+ L L           +  LP     L+NLKS+K   +    +  
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWT-------GIRSLPASIANLQNLKSLKIRNSPLSAL-- 221

Query: 199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCN 258
                       P++   PKL+ L++ G   L  +               L  L +  C+
Sbjct: 222 -----------GPAIHHLPKLEELDLRGCTALRNY------PPIFGGRAPLKRLILKDCS 264

Query: 259 KLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRI 306
            L  LP  + ++T L+ L +  C N+  LP       + I +L +  I
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-------SLIAQLPANCI 305

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 64/458 (13%), Positives = 117/458 (25%), Gaps = 158/458 (34%)

Query: 20  SKLTSLRRL------------DKFVVGGGVDGSNTGRL--QLRGECSIEGLCNVSHVDEA 65
             ++   RL             KFV    V   N   L   ++ E     +    ++++ 
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 66  ERLQLSN----KKNLLRLHLQFGGKDEDWRN--EEEEEEEGEVVDGEDEEGRRKNEKDKQ 119
           +RL   N    K N+ RL           R    E    +  ++DG    G       K 
Sbjct: 117 DRLYNDNQVFAKYNVSRLQ-----PYLKLRQALLELRPAKNVLIDGVLGSG-------KT 164

Query: 120 LL--EALQPPLNVEELWIIFYGGNIFPKWLTS------------LANL-RELNLSLCFNC 164
            +  +         ++        IF  WL              L  L  +++ +     
Sbjct: 165 WVALDVCLS----YKVQCKMDFK-IF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 165 EHLPQLGKLPLEKLQ------------------LKNLKSVKRVGNEF-LG---------- 195
           +H   + KL +  +Q                  L N+++  +  N F L           
Sbjct: 218 DHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNAFNLSCKILLTTRFK 275

Query: 196 --IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW-NYRIT--RKENISIMPRLS 250
              +  S    +  S     +     +   +     L ++ + R     +E ++  PR  
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCRPQDLPREVLTTNPRRL 330

Query: 251 SLEVSSCNKLKALPDYLLQMTVLQNLRIF--FCENME---------ELPILEDHRTTDIP 299
           S+   S     A  D    +   +   I       +E          L +        IP
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS--AHIP 388

Query: 300 ------------------------RLSSLRIGYCPKLKVLPDCLLRT-------TTLQKL 328
                                   + S +          +P   L           L + 
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 329 TIWGCPLLENRYREGKGEDWHKI----------SHIPH 356
            +       + Y   K  D   +          SHI H
Sbjct: 449 IV-------DHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 26/210 (12%), Positives = 65/210 (30%), Gaps = 34/210 (16%)

Query: 142 IFPKWLTSLANLRELNLSLCFNCEHLPQLGKLPLEKLQLKNLKSVKRVGNEFLGIEESSE 201
             P  +  L  L  L L    + E + +    P       + +  +++   +        
Sbjct: 96  RVPDAIGQLTELEVLALG--SHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK------ 147

Query: 202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLK 261
                  +            L  D +    +   + + K++  I  + + +   S N + 
Sbjct: 148 -------TFVDYDPREDFSDLIKDCINSDPQ---QKSIKKSSRITLKDTQIGQLS-NNIT 196

Query: 262 ALPDYLLQMTVLQNLRIFFCE----------NMEELPILEDHRTTD-----IPRLSSLRI 306
            +   ++++T L+   +                E     + ++T D     +  L+ + +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 307 GYCPKLKVLPDCLLRTTTLQKLTIWGCPLL 336
             CP L  LP  L     +Q + +     +
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.86
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.83
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.82
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.82
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.82
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.81
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.81
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.79
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.76
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.76
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.76
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.75
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.74
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.74
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.73
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.72
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.72
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.7
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.68
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.68
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.67
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.67
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.66
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.66
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.65
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.63
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.62
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.6
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.6
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.6
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.6
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.6
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.59
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.57
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.57
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.56
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.56
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.54
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.53
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.5
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.5
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.49
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.48
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.48
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.47
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.42
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.42
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.37
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.36
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.34
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.33
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.33
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.32
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.23
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.2
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.03
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.03
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.0
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.98
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.97
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.94
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.91
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.91
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.9
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.6
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.55
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.2
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.15
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.9
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.68
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.52
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.42
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.12
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.08
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.07
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.35
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.08
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	86.32

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.86  E-value=9.5e-22  Score=199.84  Aligned_cols=274  Identities=16%  Similarity=0.100  Sum_probs=169.9

Q ss_pred             hhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC-CCchh
Q 018079           68 LQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKW  146 (361)
Q Consensus        68 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~  146 (361)
                      ..++++++|+.|+++.|.........+...+.++.+++..+.-      ...++..+..+++|++|++++|... .+|.+
T Consensus       436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~  509 (768)
T 3rgz_A          436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL------TGEIPSGLSNCTNLNWISLSNNRLTGEIPKW  509 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC------CSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc------cCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence            4467777888888887776655556667777788888877641      1234566778888999999888876 47888


Q ss_pred             hhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCC------------------
Q 018079          147 LTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS------------------  206 (361)
Q Consensus       147 ~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~------------------  206 (361)
                      ++.+++|+.|++++|.-.+.+|. ++.++ |+.|+++++.-...+|..++............                  
T Consensus       510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  589 (768)
T 3rgz_A          510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG  589 (768)
T ss_dssp             GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred             HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence            88889999999988754446665 77888 99999987664445565544322111111000                  


Q ss_pred             --------------------------------CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEE
Q 018079          207 --------------------------------SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEV  254 (361)
Q Consensus       207 --------------------------------~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l  254 (361)
                                                      ......+..+++|+.|+++++.-...++.      .++.+++|+.|++
T Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~------~l~~l~~L~~L~L  663 (768)
T 3rgz_A          590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK------EIGSMPYLFILNL  663 (768)
T ss_dssp             SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG------GGGGCTTCCEEEC
T ss_pred             cccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH------HHhccccCCEEeC
Confidence                                            00112345567788888887543334433      4567888888888


Q ss_pred             ecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          255 SSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       255 ~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      +++.--..+|..++.+++|+.|+++++.--..+|.    .++++++|+.|++++|+....+|.+ ..+.++....+.|||
T Consensus       664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~----~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~  738 (768)
T 3rgz_A          664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ----AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP  738 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG----GGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred             cCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence            88643347888888888888888888655556775    5666788888888886555566642 233344444445554


Q ss_pred             cch----hhccCCCCcccchhccCCcee
Q 018079          335 LLE----NRYREGKGEDWHKISHIPHIK  358 (361)
Q Consensus       335 ~l~----~~~~~~~~~~~~~~~~i~~~~  358 (361)
                      .+=    ..|....+++|++++|+|++.
T Consensus       739 ~Lcg~~l~~C~~~~~~~~~~~~~~~~~~  766 (768)
T 3rgz_A          739 GLCGYPLPRCDPSNADGYAHHQRSHHHH  766 (768)
T ss_dssp             EEESTTSCCCCSCC--------------
T ss_pred             hhcCCCCcCCCCCccCCCCCCCCccccC
Confidence            321    268888999999999999863

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=4.1e-20  Score=170.22  Aligned_cols=276  Identities=17%  Similarity=0.141  Sum_probs=172.7

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|+++++ .+..+|. ++.+++|++|++.++... +...+..++ |+ .+.+.+. .+...     ..+.++++|++|
T Consensus        46 L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~~~~l~~L~-~L~L~~n-~i~~~-----~~~~~l~~L~~L  115 (347)
T 4fmz_A           46 ITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGNQIT-DISPLSNLVKLT-NLYIGTN-KITDI-----SALQNLTNLREL  115 (347)
T ss_dssp             CSEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCC-EEECCSS-CCCCC-----GGGTTCTTCSEE
T ss_pred             ccEEEEeCC-ccccchh-hhhcCCccEEEccCCccc-cchhhhcCCcCC-EEEccCC-cccCc-----hHHcCCCcCCEE
Confidence            578889988 7888775 888999999999655444 222233333 44 4444432 11221     237788888888


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS  159 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~  159 (361)
                      ++++|.......  +...++++.+++..+.....       ...+..+++|++|++.++....++. +..+++|+.|+++
T Consensus       116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-------~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~  185 (347)
T 4fmz_A          116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSD-------LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLN  185 (347)
T ss_dssp             ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-------CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECT
T ss_pred             ECcCCcccCchh--hccCCceeEEECCCCCCccc-------ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEcc
Confidence            888776554222  44555556666655432111       2235556666666666665544443 4566666666666


Q ss_pred             CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079          160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT  238 (361)
Q Consensus       160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~  238 (361)
                      +| .+..++.+..++ |+.++++++. +...+.                     +..+++|++|+++++ .+...+    
T Consensus       186 ~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------------~~~~~~L~~L~l~~n-~l~~~~----  237 (347)
T 4fmz_A          186 YN-QIEDISPLASLTSLHYFTAYVNQ-ITDITP---------------------VANMTRLNSLKIGNN-KITDLS----  237 (347)
T ss_dssp             TS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG---------------------GGGCTTCCEEECCSS-CCCCCG----
T ss_pred             CC-cccccccccCCCccceeecccCC-CCCCch---------------------hhcCCcCCEEEccCC-ccCCCc----
Confidence            65 344444455555 6666666532 333222                     347788888888875 333332    


Q ss_pred             cccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccc
Q 018079          239 RKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC  318 (361)
Q Consensus       239 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~  318 (361)
                         .+..+++|+.|+++++ .++.++ .+..+++|+.|++++| .++.++     .+..+++|+.|++++|......+..
T Consensus       238 ---~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-----~~~~l~~L~~L~L~~n~l~~~~~~~  306 (347)
T 4fmz_A          238 ---PLANLSQLTWLEIGTN-QISDIN-AVKDLTKLKMLNVGSN-QISDIS-----VLNNLSQLNSLFLNNNQLGNEDMEV  306 (347)
T ss_dssp             ---GGTTCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred             ---chhcCCCCCEEECCCC-ccCCCh-hHhcCCCcCEEEccCC-ccCCCh-----hhcCCCCCCEEECcCCcCCCcChhH
Confidence               1457888888888885 566664 5667888888888886 455554     3556888999999987554445577


Q ss_pred             cCCCCCCCeEEEeCCcc
Q 018079          319 LLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       319 l~~l~~L~~L~l~~c~~  335 (361)
                      +..+++|++|++++|+-
T Consensus       307 l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          307 IGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             HHTCTTCSEEECCSSSC
T ss_pred             hhccccCCEEEccCCcc
Confidence            88889999999998874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=4.4e-20  Score=170.03  Aligned_cols=275  Identities=16%  Similarity=0.151  Sum_probs=202.0

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|++++| .+..+|. +.++++|++|++.++... ....+..++ |+ .+.+.+.. +....     .+.++++|+.|
T Consensus        68 L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~-~L~l~~n~-i~~~~-----~~~~l~~L~~L  137 (347)
T 4fmz_A           68 LEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNLR-ELYLNEDN-ISDIS-----PLANLTKMYSL  137 (347)
T ss_dssp             CCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCS-EEECTTSC-CCCCG-----GGTTCTTCCEE
T ss_pred             ccEEEccCC-ccccchh-hhcCCcCCEEEccCCccc-CchHHcCCCcCC-EEECcCCc-ccCch-----hhccCCceeEE
Confidence            689999999 8888887 999999999999666544 333333333 44 55554422 11111     27889999999


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS  159 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~  159 (361)
                      +++.|...... ..+...++++.+++..+.       ...+ ..+..+++|++|++++|....++. +..+++|+.++++
T Consensus       138 ~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~-------~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~  207 (347)
T 4fmz_A          138 NLGANHNLSDL-SPLSNMTGLNYLTVTESK-------VKDV-TPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAY  207 (347)
T ss_dssp             ECTTCTTCCCC-GGGTTCTTCCEEECCSSC-------CCCC-GGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECC
T ss_pred             ECCCCCCcccc-cchhhCCCCcEEEecCCC-------cCCc-hhhccCCCCCEEEccCCccccccc-ccCCCccceeecc
Confidence            99988544322 336777788888888764       1111 126788999999999998777766 7789999999999


Q ss_pred             CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079          160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT  238 (361)
Q Consensus       160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~  238 (361)
                      ++ .+..++.+..++ |+.|++++|. +..++.                     +..+++|++|+++++ .+..++    
T Consensus       208 ~n-~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~---------------------~~~l~~L~~L~l~~n-~l~~~~----  259 (347)
T 4fmz_A          208 VN-QITDITPVANMTRLNSLKIGNNK-ITDLSP---------------------LANLSQLTWLEIGTN-QISDIN----  259 (347)
T ss_dssp             SS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGG---------------------GTTCTTCCEEECCSS-CCCCCG----
T ss_pred             cC-CCCCCchhhcCCcCCEEEccCCc-cCCCcc---------------------hhcCCCCCEEECCCC-ccCCCh----
Confidence            96 566666677888 9999999864 454443                     337899999999986 444432    


Q ss_pred             cccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccc
Q 018079          239 RKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC  318 (361)
Q Consensus       239 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~  318 (361)
                         .+..+++|+.|++++| .++.++ .+..+++|+.|++++|.--...|.    .+.++++|+.|++++|+ ++.++. 
T Consensus       260 ---~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~-l~~~~~-  328 (347)
T 4fmz_A          260 ---AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDME----VIGGLTNLTTLFLSQNH-ITDIRP-  328 (347)
T ss_dssp             ---GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHH----HHHTCTTCSEEECCSSS-CCCCGG-
T ss_pred             ---hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChh----HhhccccCCEEEccCCc-cccccC-
Confidence               3557999999999996 677775 577799999999999743322222    45668999999999975 666655 


Q ss_pred             cCCCCCCCeEEEeCCc
Q 018079          319 LLRTTTLQKLTIWGCP  334 (361)
Q Consensus       319 l~~l~~L~~L~l~~c~  334 (361)
                      +..+++|+.|++++|+
T Consensus       329 ~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          329 LASLSKMDSADFANQV  344 (347)
T ss_dssp             GGGCTTCSEESSSCC-
T ss_pred             hhhhhccceeehhhhc
Confidence            7889999999999986

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=1.7e-19  Score=178.43  Aligned_cols=32  Identities=19%  Similarity=0.236  Sum_probs=20.2

Q ss_pred             CceeecCCCCccccc-CccCCCccccceecceee
Q 018079            1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFVV   33 (361)
Q Consensus         1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~   33 (361)
                      |++|++++| .+..+ |..++++++|++|++.++
T Consensus        83 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           83 LDTLVLTAN-PLIFMAETALSGPKALKHLFFIQT  115 (606)
T ss_dssp             CCEEECTTC-CCSEECTTTTSSCTTCCEEECTTS
T ss_pred             cCeeeCCCC-cccccChhhhcccccccEeecccc
Confidence            567777777 55554 445677777777776443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=2.1e-20  Score=184.93  Aligned_cols=194  Identities=18%  Similarity=0.161  Sum_probs=88.2

Q ss_pred             CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS  206 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  206 (361)
                      ++|++|++.++....+| ++..+++|+.|++++|. ++.+|.+ .++ |+.|+++++..+...+  +.....+..+.++.
T Consensus       285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~-l~~lp~~-~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~  359 (606)
T 3vq2_A          285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQ-LKQFPTL-DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSR  359 (606)
T ss_dssp             TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCC-CSSCCCC-CCSSCCEEEEESCSSCEECC--CCCCTTCCEEECCS
T ss_pred             CCCCEEEecCccchhhh-hccccccCCEEEccccc-CcccccC-CCCccceeeccCCcCccchh--hccCCCCCEEECcC
Confidence            44445555544444444 44455566666666653 2555544 555 6666665543333221  11111111111110


Q ss_pred             CC------CCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-c-hhccCCCCcceEee
Q 018079          207 SS------SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-P-DYLLQMTVLQNLRI  278 (361)
Q Consensus       207 ~~------~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~~~~~l~~L~~L~l  278 (361)
                      ..      ....+..+++|++|+++++. +..++      ..+..+++|+.|+++++. +..+ + ..+..+++|++|++
T Consensus       360 n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~------~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l  431 (606)
T 3vq2_A          360 NALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS------ANFMGLEELQHLDFQHST-LKRVTEFSAFLSLEKLLYLDI  431 (606)
T ss_dssp             SCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC------CCCTTCTTCCEEECTTSE-EESTTTTTTTTTCTTCCEEEC
T ss_pred             CccCCCcchhhhhccCCcccEeECCCCc-cccch------hhccCCCCCCeeECCCCc-cCCccChhhhhccccCCEEEC
Confidence            00      01112334444444444322 22211      133455666666665542 3222 2 24455666666666


Q ss_pred             ccCCC-------cccCCcccccccCC--------------CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          279 FFCEN-------MEELPILEDHRTTD--------------IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       279 ~~c~~-------l~~lp~L~~L~l~~--------------l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      ++|.-       +..+++|++|++++              +++|++|++++|......|..+..+++|++|++++|.
T Consensus       432 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~  508 (606)
T 3vq2_A          432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN  508 (606)
T ss_dssp             TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence            65432       22334455544433              5666666666653333334556666777777776664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.83  E-value=3.1e-19  Score=176.52  Aligned_cols=40  Identities=23%  Similarity=0.084  Sum_probs=22.4

Q ss_pred             hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccc
Q 018079           69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDE  108 (361)
Q Consensus        69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  108 (361)
                      .++++++|++|++++|.........+...++++.+++..+
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  163 (606)
T 3t6q_A          124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN  163 (606)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred             hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence            3566667777777766654433233333556666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=1.8e-20  Score=190.35  Aligned_cols=304  Identities=17%  Similarity=0.098  Sum_probs=200.2

Q ss_pred             CceeecCCCCccc-ccCcc-CCCccccceecceeeecCC-CCCcccccc--eeceeEEcC---------------CCCCC
Q 018079            1 MRSLLNFGTNSLK-YMPIG-ISKLTSLRRLDKFVVGGGV-DGSNTGRLQ--LRGECSIEG---------------LCNVS   60 (361)
Q Consensus         1 L~~L~l~~~~~l~-~lP~~-i~~L~~L~~L~l~~~~~~~-~~~~l~~L~--L~~~l~l~~---------------l~~~~   60 (361)
                      |++|++++| .+. .+|.+ ++++++|++|++.++.... ....+..+.  ++ .+.+.+               +..++
T Consensus       320 L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~-~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          320 LESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             CCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS-EEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             ccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCc-EEEccCCCcCCCcChhhhhcccCCcc
Confidence            577888888 555 77766 8888888888886554321 111111110  11 111111               00000


Q ss_pred             C-------hHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEE
Q 018079           61 H-------VDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEEL  133 (361)
Q Consensus        61 ~-------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L  133 (361)
                      .       .....+..+.++++|+.|+++.|.........+...++++.+++..+..      ...++..+..+++|++|
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l------~~~~p~~~~~l~~L~~L  471 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML------EGEIPQELMYVKTLETL  471 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC------CSCCCGGGGGCTTCCEE
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc------cCcCCHHHcCCCCceEE
Confidence            0       0012234467777888888877765544455566667777777776541      12345566677788888


Q ss_pred             EecccCCCC-CchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCC
Q 018079          134 WIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSS  210 (361)
Q Consensus       134 ~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  210 (361)
                      ++++|.... +|.++..+++|+.|++++|.-...+|. ++.++ |+.|+++++.-...+|..                  
T Consensus       472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------  533 (768)
T 3rgz_A          472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE------------------  533 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG------------------
T ss_pred             EecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH------------------
Confidence            888777653 677777888888888888754445555 67777 888888876533344443                  


Q ss_pred             CcccCCCCccEEEEcCCccchhhhhhhcc---------------------------------------------------
Q 018079          211 PSVIAFPKLKSLEIDGMKELEEWNYRITR---------------------------------------------------  239 (361)
Q Consensus       211 ~~l~~~~~L~~L~L~~~~~l~~~~~~~~~---------------------------------------------------  239 (361)
                        +..+++|+.|+++++.-...++..+..                                                   
T Consensus       534 --l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (768)
T 3rgz_A          534 --LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN  611 (768)
T ss_dssp             --GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred             --HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence              447889999999876432222210000                                                   


Q ss_pred             -------------ccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEE
Q 018079          240 -------------KENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRI  306 (361)
Q Consensus       240 -------------~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l  306 (361)
                                   ...+..+++|+.|+++++.--..+|..++.+++|+.|+++++.--..+|.    .++++++|+.|++
T Consensus       612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~----~l~~L~~L~~LdL  687 (768)
T 3rgz_A          612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD----EVGDLRGLNILDL  687 (768)
T ss_dssp             CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEEC
T ss_pred             ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh----HHhCCCCCCEEEC
Confidence                         01234467899999998654448899999999999999999765567886    6788999999999


Q ss_pred             ecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          307 GYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       307 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      ++|.....+|..+..+++|+.|++++|+-.
T Consensus       688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~  717 (768)
T 3rgz_A          688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS  717 (768)
T ss_dssp             CSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred             CCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence            997666689999999999999999999654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=2e-20  Score=171.20  Aligned_cols=200  Identities=23%  Similarity=0.353  Sum_probs=159.0

Q ss_pred             cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhc
Q 018079           70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTS  149 (361)
Q Consensus        70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~  149 (361)
                      +.++++|++|+++.|...                               .++..+..+++|++|++++|....+|..++.
T Consensus       100 l~~l~~L~~L~L~~n~l~-------------------------------~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~  148 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-------------------------------ELPDTMQQFAGLETLTLARNPLRALPASIAS  148 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-------------------------------CCCSCGGGGTTCSEEEEESCCCCCCCGGGGG
T ss_pred             hhhCCCCCEEECCCCCcc-------------------------------chhHHHhccCCCCEEECCCCccccCcHHHhc
Confidence            455777888888777632                               2344556677788888888777678888888


Q ss_pred             CccCCeeeecCCCCCCCCCC-CC---------CCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCC
Q 018079          150 LANLRELNLSLCFNCEHLPQ-LG---------KLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPK  218 (361)
Q Consensus       150 l~~L~~L~l~~~~~~~~l~~-l~---------~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  218 (361)
                      +++|+.|++++|...+.+|. +.         .++ |+.|+++++ .++.++..                    +..+++
T Consensus       149 l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~--------------------l~~l~~  207 (328)
T 4fcg_A          149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS--------------------IANLQN  207 (328)
T ss_dssp             CTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGG--------------------GGGCTT
T ss_pred             CcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHh--------------------hcCCCC
Confidence            88888888888776666665 33         378 999999875 45655543                    447899


Q ss_pred             ccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCC
Q 018079          219 LKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDI  298 (361)
Q Consensus       219 L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l  298 (361)
                      |++|+++++ .+..++.      .+..+++|+.|++++|+....+|..+..+++|+.|++++|...+.+|.    .+.++
T Consensus       208 L~~L~L~~N-~l~~l~~------~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~----~~~~l  276 (328)
T 4fcg_A          208 LKSLKIRNS-PLSALGP------AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL----DIHRL  276 (328)
T ss_dssp             CCEEEEESS-CCCCCCG------GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT----TGGGC
T ss_pred             CCEEEccCC-CCCcCch------hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch----hhhcC
Confidence            999999985 4554443      466899999999999888888898899999999999999998888886    57789


Q ss_pred             CCccEEEEecCCCCCccccccCCCCCCCeEEEeC
Q 018079          299 PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWG  332 (361)
Q Consensus       299 ~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~  332 (361)
                      ++|+.|++++|+.+..+|.++.++++|+.+++..
T Consensus       277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred             CCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence            9999999999999999999999999999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.82  E-value=5.1e-19  Score=169.63  Aligned_cols=298  Identities=17%  Similarity=0.188  Sum_probs=141.4

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|++++| .+..+|+ ++++++|++|++.++... ....+..++ |+ .+.+.+.. +....     .+.++++|++|
T Consensus        70 L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~-~L~L~~n~-l~~~~-----~~~~l~~L~~L  139 (466)
T 1o6v_A           70 LTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIA-DITPLANLTNLT-GLTLFNNQ-ITDID-----PLKNLTNLNRL  139 (466)
T ss_dssp             CCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCC-EEECCSSC-CCCCG-----GGTTCTTCSEE
T ss_pred             CCEEECCCC-ccCCchh-hhccccCCEEECCCCccc-cChhhcCCCCCC-EEECCCCC-CCCCh-----HHcCCCCCCEE
Confidence            466666666 5666665 666666666666544333 121133333 33 44433311 11111     16677777777


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS  159 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~  159 (361)
                      +++.|......  .+....+++.+++...        ... ...+..+++|++|+++++....++ .+..+++|+.|+++
T Consensus       140 ~l~~n~l~~~~--~~~~l~~L~~L~l~~~--------~~~-~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~  207 (466)
T 1o6v_A          140 ELSSNTISDIS--ALSGLTSLQQLSFGNQ--------VTD-LKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIAT  207 (466)
T ss_dssp             EEEEEEECCCG--GGTTCTTCSEEEEEES--------CCC-CGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred             ECCCCccCCCh--hhccCCcccEeecCCc--------ccC-chhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEec
Confidence            77776554322  2334444444444210        000 112455556666666655543333 24455555555555


Q ss_pred             CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCC--CCCCcccCCCCccEEEEcCCccchhhhhh
Q 018079          160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS--SSSPSVIAFPKLKSLEIDGMKELEEWNYR  236 (361)
Q Consensus       160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~~~  236 (361)
                      +| .+..+++++.++ |+.|+++++. ++.++ .+.....+..+.++..  ...+.+..+++|+.|+++++ .+...+. 
T Consensus       208 ~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~-  282 (466)
T 1o6v_A          208 NN-QISDITPLGILTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISP-  282 (466)
T ss_dssp             SS-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGG-
T ss_pred             CC-cccccccccccCCCCEEECCCCC-cccch-hhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCcccc-
Confidence            54 233333344444 5555555432 22221 1111111111111100  11112445566666666553 2222211 


Q ss_pred             hccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCC-----cccCCcccccc-----------cCCCCC
Q 018079          237 ITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCEN-----MEELPILEDHR-----------TTDIPR  300 (361)
Q Consensus       237 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~-----l~~lp~L~~L~-----------l~~l~~  300 (361)
                            +..+++|+.|+++++ .++.++. +..+++|+.|++++|.-     +..+++|+.|+           +.++++
T Consensus       283 ------~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~  354 (466)
T 1o6v_A          283 ------LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN  354 (466)
T ss_dssp             ------GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred             ------ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCC
Confidence                  234555555555553 3333332 34455555555554311     12233333333           344788


Q ss_pred             ccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          301 LSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       301 L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      |+.|++++|. ++.++. +..+++|+.|++++|+-
T Consensus       355 L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          355 INWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CCEEECCSSC-CCBCGG-GTTCTTCCEEECCCEEE
T ss_pred             CCEEeCCCCc-cCccch-hhcCCCCCEEeccCCcc
Confidence            9999998864 444444 78889999999988854

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.82  E-value=9.9e-20  Score=175.02  Aligned_cols=289  Identities=16%  Similarity=0.098  Sum_probs=141.2

Q ss_pred             CceeecCCCCcccccC-ccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      +++|+++++ .+..++ ..+.++++|++|++.++.... ....+..++ |+ .+.+.+-. +.   ......+.++++|+
T Consensus        34 l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~L~L~~n~-l~---~~~~~~~~~l~~L~  107 (477)
T 2id5_A           34 TRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLR-TLGLRSNR-LK---LIPLGVFTGLSNLT  107 (477)
T ss_dssp             CSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECCSSC-CC---SCCTTSSTTCTTCC
T ss_pred             CcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCC-EEECCCCc-CC---ccCcccccCCCCCC
Confidence            456677766 666654 346677777777773322110 011111121 22 22222100 00   00111244555555


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCch-hhhcCccCCe
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRE  155 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~  155 (361)
                      .|+++.|.........+....+++.|++..+.       ...+ ...+..+++|++|++.+|....+|. ++..+++|+.
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDND-------LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTT-------CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCc-------cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence            55555554433333334444444444444432       1111 2234444555555555554444332 2344555555


Q ss_pred             eeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079          156 LNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE  232 (361)
Q Consensus       156 L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~  232 (361)
                      |+++++ .+..++.  +..++ |+.|+++++..+..++....                    ...+|++|+++++ .++.
T Consensus       181 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--------------------~~~~L~~L~l~~n-~l~~  238 (477)
T 2id5_A          181 LRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--------------------YGLNLTSLSITHC-NLTA  238 (477)
T ss_dssp             EEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT--------------------TTCCCSEEEEESS-CCCS
T ss_pred             EeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccc--------------------cCccccEEECcCC-cccc
Confidence            555553 2222222  44445 55555555444444433222                    2335566666553 3333


Q ss_pred             hhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCC
Q 018079          233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPK  311 (361)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~  311 (361)
                      ++.     ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++ .+..++   .-.+.++++|+.|++++| .
T Consensus       239 ~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~~l~~L~~L~L~~N-~  307 (477)
T 2id5_A          239 VPY-----LAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVE---PYAFRGLNYLRVLNVSGN-Q  307 (477)
T ss_dssp             CCH-----HHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEEC---TTTBTTCTTCCEEECCSS-C
T ss_pred             cCH-----HHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCC-ccceEC---HHHhcCcccCCEEECCCC-c
Confidence            322     23345566666666654 3444433 2444666666666654 222221   114455889999999985 6


Q ss_pred             CCccc-cccCCCCCCCeEEEeCCcc
Q 018079          312 LKVLP-DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       312 l~~l~-~~l~~l~~L~~L~l~~c~~  335 (361)
                      ++.++ ..+..+++|+.|++++++-
T Consensus       308 l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          308 LTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CceeCHhHcCCCcccCEEEccCCCc
Confidence            77777 5678899999999998863

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=5.7e-20  Score=182.85  Aligned_cols=315  Identities=12%  Similarity=0.132  Sum_probs=157.6

Q ss_pred             CceeecCCCCcccc------------------cCccCC--CccccceecceeeecCC-CCCcccccc-eeceeEEcCCCC
Q 018079            1 MRSLLNFGTNSLKY------------------MPIGIS--KLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCN   58 (361)
Q Consensus         1 L~~L~l~~~~~l~~------------------lP~~i~--~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~   58 (361)
                      |++|++++| .+..                  +|++++  ++++|++|++.++.... ....+..++ |+ .+.+.+...
T Consensus       208 L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~Ls~n~~  285 (636)
T 4eco_A          208 LRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ-LINVACNRG  285 (636)
T ss_dssp             CCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC-EEECTTCTT
T ss_pred             CCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC-EEECcCCCC
Confidence            688999999 6777                  999999  99999999997765432 223344444 33 444443221


Q ss_pred             CCChHH-HHHhhcCCC------CCCceEEEEecCCCCCCc-chhhhhhcccccccccccccccchhhH-HHHHhcCCCCC
Q 018079           59 VSHVDE-AERLQLSNK------KNLLRLHLQFGGKDEDWR-NEEEEEEEGEVVDGEDEEGRRKNEKDK-QLLEALQPPLN  129 (361)
Q Consensus        59 ~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~l~~  129 (361)
                         ... ..+..++++      ++|++|+++.|.....+. ..+...++++.|++..+.       .. .++ .+..+++
T Consensus       286 ---l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-------l~g~ip-~~~~l~~  354 (636)
T 4eco_A          286 ---ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-------LEGKLP-AFGSEIK  354 (636)
T ss_dssp             ---SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-------CEEECC-CCEEEEE
T ss_pred             ---CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-------Cccchh-hhCCCCC
Confidence               122 334444443      778888887776653222 156666677777776654       22 222 4444556


Q ss_pred             ccEEEecccCCCCCchhhhcCcc-CCeeeecCCCCCCCCCC-CCC--Cc-cceEeccccccceeeccccc-------ccC
Q 018079          130 VEELWIIFYGGNIFPKWLTSLAN-LRELNLSLCFNCEHLPQ-LGK--LP-LEKLQLKNLKSVKRVGNEFL-------GIE  197 (361)
Q Consensus       130 L~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~l~~-l~~--l~-L~~L~l~~~~~l~~l~~~~~-------~~~  197 (361)
                      |++|++++|....+|.++..+++ |+.|+++++ .+..+|. +..  ++ |+.|+++++.-....+..+.       ...
T Consensus       355 L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~  433 (636)
T 4eco_A          355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI  433 (636)
T ss_dssp             ESEEECCSSEEEECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred             CCEEECCCCccccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence            66666666554455555555555 666666654 2334443 222  23 55555554321111111111       000


Q ss_pred             CCCCCCCCCCC--CCCc--ccCCCCccEEEEcCCccchhhhhhhccc--cccccCCCccEEEEecCCCCCccchhcc--C
Q 018079          198 ESSEDGPSSSS--SSPS--VIAFPKLKSLEIDGMKELEEWNYRITRK--ENISIMPRLSSLEVSSCNKLKALPDYLL--Q  269 (361)
Q Consensus       198 ~~~~~~~~~~~--~~~~--l~~~~~L~~L~L~~~~~l~~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~  269 (361)
                      .+..+.++...  .++.  +..+++|++|+++++ .+..++......  .....+++|+.|+++++ .++.+|..+.  .
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~  511 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATT  511 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSS-CCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTT
T ss_pred             CCCEEECcCCccCcCCHHHHccCCCCCEEECCCC-CCCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhcc
Confidence            11111111000  0110  223555555555553 222222200000  00011125555555553 3445555444  4


Q ss_pred             CCCcceEeeccCCCcccC-------Cccccccc-------------------CCCCCccEEEEecCCCCCccccccCCCC
Q 018079          270 MTVLQNLRIFFCENMEEL-------PILEDHRT-------------------TDIPRLSSLRIGYCPKLKVLPDCLLRTT  323 (361)
Q Consensus       270 l~~L~~L~l~~c~~l~~l-------p~L~~L~l-------------------~~l~~L~~L~l~~c~~l~~l~~~l~~l~  323 (361)
                      +++|+.|+++++ .+..+       ++|+.|++                   .++++|++|++++|. ++.+|..+.  +
T Consensus       512 l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~--~  587 (636)
T 4eco_A          512 LPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT--P  587 (636)
T ss_dssp             CTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC--T
T ss_pred             CCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh--C
Confidence            555555555553 22222       23333333                   336777788887754 477776554  6


Q ss_pred             CCCeEEEeCCcc
Q 018079          324 TLQKLTIWGCPL  335 (361)
Q Consensus       324 ~L~~L~l~~c~~  335 (361)
                      +|+.|++++|+.
T Consensus       588 ~L~~L~Ls~N~l  599 (636)
T 4eco_A          588 NISVLDIKDNPN  599 (636)
T ss_dssp             TCCEEECCSCTT
T ss_pred             cCCEEECcCCCC
Confidence            778888887754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=1.2e-19  Score=184.85  Aligned_cols=314  Identities=12%  Similarity=0.136  Sum_probs=193.8

Q ss_pred             CceeecCCCCcccc------------------cCccCC--CccccceecceeeecCC-CCCcccccc-eeceeEEcCCCC
Q 018079            1 MRSLLNFGTNSLKY------------------MPIGIS--KLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCN   58 (361)
Q Consensus         1 L~~L~l~~~~~l~~------------------lP~~i~--~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~   58 (361)
                      |++|++++| .+..                  +|++++  ++++|++|++.++.... ....+..++ |+ .+.+.+...
T Consensus       450 L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~-~L~Ls~N~~  527 (876)
T 4ecn_A          450 LQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ-SLNIACNRG  527 (876)
T ss_dssp             CCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC-EEECTTCTT
T ss_pred             CCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC-EEECcCCCC
Confidence            689999999 7777                  999998  99999999997765432 223344444 44 555544221


Q ss_pred             CCChHHHHHhh-------cCCCCCCceEEEEecCCCCCCc-chhhhhhcccccccccccccccchhhHHHHHhcCCCCCc
Q 018079           59 VSHVDEAERLQ-------LSNKKNLLRLHLQFGGKDEDWR-NEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNV  130 (361)
Q Consensus        59 ~~~~~~~~~~~-------l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  130 (361)
                      +..  ...+..       +..+++|+.|+++.|.....+. ..+...++++.|++..+.       ...++ .+..+++|
T Consensus       528 lsg--~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-------l~~lp-~~~~L~~L  597 (876)
T 4ecn_A          528 ISA--AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-------VRHLE-AFGTNVKL  597 (876)
T ss_dssp             SCH--HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-------CCBCC-CCCTTSEE
T ss_pred             ccc--ccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-------cccch-hhcCCCcc
Confidence            211  023333       3455699999999998874333 267888899999998875       33334 77888999


Q ss_pred             cEEEecccCCCCCchhhhcCcc-CCeeeecCCCCCCCCCC-CCCC--c-cceEeccccccceeeccccc-cc-----CCC
Q 018079          131 EELWIIFYGGNIFPKWLTSLAN-LRELNLSLCFNCEHLPQ-LGKL--P-LEKLQLKNLKSVKRVGNEFL-GI-----EES  199 (361)
Q Consensus       131 ~~L~l~~~~~~~~p~~~~~l~~-L~~L~l~~~~~~~~l~~-l~~l--~-L~~L~l~~~~~l~~l~~~~~-~~-----~~~  199 (361)
                      ++|++++|....+|.++..+++ |+.|++++| .+..+|. +..+  + |+.|+++++. +....+.+. ..     ..+
T Consensus       598 ~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~-l~g~ip~l~~~l~~~~~~~L  675 (876)
T 4ecn_A          598 TDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINA  675 (876)
T ss_dssp             SEEECCSSCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSC-TTTTSSSCSSCTTTCCCCCE
T ss_pred             eEEECcCCccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCc-CCCccccchhhhccccCCCc
Confidence            9999999888788988888888 999999987 4556776 3333  4 8888888754 322211111 00     011


Q ss_pred             CCCCCCCCC--CCCc--ccCCCCccEEEEcCCccchhhhhhhccc--cccccCCCccEEEEecCCCCCccchhcc--CCC
Q 018079          200 SEDGPSSSS--SSPS--VIAFPKLKSLEIDGMKELEEWNYRITRK--ENISIMPRLSSLEVSSCNKLKALPDYLL--QMT  271 (361)
Q Consensus       200 ~~~~~~~~~--~~~~--l~~~~~L~~L~L~~~~~l~~~~~~~~~~--~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~l~  271 (361)
                      ..+.++...  .++.  +..+++|+.|+++++ .+..++..+...  .....+++|+.|++++| .++.+|..+.  .++
T Consensus       676 ~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~  753 (876)
T 4ecn_A          676 STVTLSYNEIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLP  753 (876)
T ss_dssp             EEEECCSSCCCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCT
T ss_pred             CEEEccCCcCCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCC
Confidence            111111110  1110  124566666666653 333333200000  00112236777777664 5556666665  677


Q ss_pred             CcceEeeccCCCcccCCcccccccCCCCCccEEEEec------CCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          272 VLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGY------CPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       272 ~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~------c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      +|+.|+++++ .+..+|.    .+.++++|+.|++++      |.....+|..+.++++|+.|++++|.-
T Consensus       754 ~L~~L~Ls~N-~L~~lp~----~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          754 YLSNMDVSYN-CFSSFPT----QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             TCCEEECCSS-CCSSCCC----GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             CcCEEEeCCC-CCCccch----hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            7777777764 4444553    455677888888865      333456777777888888888888764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.82  E-value=7.5e-20  Score=167.38  Aligned_cols=212  Identities=21%  Similarity=0.272  Sum_probs=174.9

Q ss_pred             CCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCc
Q 018079           72 NKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLA  151 (361)
Q Consensus        72 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~  151 (361)
                      ...+++.|+++.+...                               .++..+..+++|++|+++++....+|..++.++
T Consensus        79 ~~~~l~~L~L~~n~l~-------------------------------~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~  127 (328)
T 4fcg_A           79 TQPGRVALELRSVPLP-------------------------------QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFA  127 (328)
T ss_dssp             TSTTCCEEEEESSCCS-------------------------------SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGT
T ss_pred             cccceeEEEccCCCch-------------------------------hcChhhhhCCCCCEEECCCCCccchhHHHhccC
Confidence            3578999999988743                               344556678999999999998888999999999


Q ss_pred             cCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079          152 NLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE  229 (361)
Q Consensus       152 ~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  229 (361)
                      +|+.|++++| .+..+|. ++.++ |+.|++++|..+..++..+....           ....+.++++|++|+++++ .
T Consensus       128 ~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~-----------~~~~~~~l~~L~~L~L~~n-~  194 (328)
T 4fcg_A          128 GLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTD-----------ASGEHQGLVNLQSLRLEWT-G  194 (328)
T ss_dssp             TCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC------------CCCEEESTTCCEEEEEEE-C
T ss_pred             CCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhcc-----------chhhhccCCCCCEEECcCC-C
Confidence            9999999997 5667776 88899 99999999887777776543210           0011456999999999985 5


Q ss_pred             chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079          230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                      +..++.      .+..+++|+.|+++++ .+..+|..+..+++|++|++++|...+.+|.    .++++++|+.|++++|
T Consensus       195 l~~lp~------~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~----~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          195 IRSLPA------SIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP----IFGGRAPLKRLILKDC  263 (328)
T ss_dssp             CCCCCG------GGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCC----CTTCCCCCCEEECTTC
T ss_pred             cCcchH------hhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHH----HhcCCCCCCEEECCCC
Confidence            555544      4668999999999996 6778888889999999999999988888886    6778999999999999


Q ss_pred             CCCCccccccCCCCCCCeEEEeCCccchh
Q 018079          310 PKLKVLPDCLLRTTTLQKLTIWGCPLLEN  338 (361)
Q Consensus       310 ~~l~~l~~~l~~l~~L~~L~l~~c~~l~~  338 (361)
                      +....+|..+..+++|+.|++++|+....
T Consensus       264 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             TTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            99999998899999999999999987664

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.82  E-value=1.7e-19  Score=179.40  Aligned_cols=134  Identities=18%  Similarity=0.164  Sum_probs=93.9

Q ss_pred             HHhhcC--CCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhH-HHHHhcCCC------CCccEEEec
Q 018079           66 ERLQLS--NKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDK-QLLEALQPP------LNVEELWII  136 (361)
Q Consensus        66 ~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~l------~~L~~L~l~  136 (361)
                      .+..++  ++++|++|+++.|.........+...++++.|++..+..+     .. .++..+..+      ++|++|+++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l-----~~~~lp~~~~~L~~~~~l~~L~~L~L~  313 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI-----SGEQLKDDWQALADAPVGEKIQIIYIG  313 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS-----CHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC-----ccccchHHHHhhhccccCCCCCEEECC
Confidence            455667  8888888888888765555566777888888888876311     22 455555544      889999999


Q ss_pred             ccCCCCCch--hhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCC-CCCCCCC
Q 018079          137 FYGGNIFPK--WLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEE-SSEDGPS  205 (361)
Q Consensus       137 ~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~-~~~~~~~  205 (361)
                      +|....+|.  +++.+++|+.|++++|.-.+.+|.++.++ |+.|+++++. +..++..+..... +..+.++
T Consensus       314 ~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls  385 (636)
T 4eco_A          314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFA  385 (636)
T ss_dssp             SSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECC
T ss_pred             CCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEcc
Confidence            888778888  88899999999999874333777777778 9999998754 5566655444433 3333333

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.81  E-value=3e-19  Score=170.43  Aligned_cols=110  Identities=21%  Similarity=0.297  Sum_probs=64.4

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccC-Ccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEEL-PIL  290 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~l-p~L  290 (361)
                      +..+++|++|+++++ .+.....     ..+..+++|+.|+++++ .++.+ +..+..+++|++|+++++ .++.+ |. 
T Consensus       295 ~~~l~~L~~L~Ls~n-~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-  365 (455)
T 3v47_A          295 FSHFTDLEQLTLAQN-EINKIDD-----NAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQ-  365 (455)
T ss_dssp             TTTCTTCCEEECTTS-CCCEECT-----TTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEECCSS-CCCEECTT-
T ss_pred             cccCCCCCEEECCCC-cccccCh-----hHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEEECCCC-cccccChh-
Confidence            344555555555553 2222211     23345566666666654 34433 334455666666666654 22222 22 


Q ss_pred             cccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079          291 EDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       291 ~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~  335 (361)
                         .+.++++|+.|++++| .++.+| ..+..+++|+.|++++++-
T Consensus       366 ---~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          366 ---SFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             ---TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ---hccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCCc
Confidence               3455889999999984 677777 4568899999999988754

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.81  E-value=2.1e-18  Score=165.42  Aligned_cols=298  Identities=16%  Similarity=0.125  Sum_probs=194.1

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      ++.|++.++ .+..+|. +..+++|++|++.++... ....+..++ |+ .+.+.+..- ....     .+.++++|++|
T Consensus        48 l~~L~l~~~-~i~~l~~-~~~l~~L~~L~Ls~n~l~-~~~~~~~l~~L~-~L~l~~n~l-~~~~-----~~~~l~~L~~L  117 (466)
T 1o6v_A           48 VTTLQADRL-GIKSIDG-VEYLNNLTQINFSNNQLT-DITPLKNLTKLV-DILMNNNQI-ADIT-----PLANLTNLTGL  117 (466)
T ss_dssp             CCEEECCSS-CCCCCTT-GGGCTTCCEEECCSSCCC-CCGGGTTCTTCC-EEECCSSCC-CCCG-----GGTTCTTCCEE
T ss_pred             ccEEecCCC-CCccCcc-hhhhcCCCEEECCCCccC-CchhhhccccCC-EEECCCCcc-ccCh-----hhcCCCCCCEE
Confidence            578999999 8888885 889999999999766544 222244444 44 555443221 1111     17889999999


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeec
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLS  159 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~  159 (361)
                      +++.|......  .+...++++.|++..+.       ...+ ..+..+++|++|++.+ .....+. +..+++|+.|+++
T Consensus       118 ~L~~n~l~~~~--~~~~l~~L~~L~l~~n~-------l~~~-~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~  185 (466)
T 1o6v_A          118 TLFNNQITDID--PLKNLTNLNRLELSSNT-------ISDI-SALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDIS  185 (466)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEEEEEEE-------ECCC-GGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECC
T ss_pred             ECCCCCCCCCh--HHcCCCCCCEEECCCCc-------cCCC-hhhccCCcccEeecCC-cccCchh-hccCCCCCEEECc
Confidence            99988765543  36777888888888764       2222 3477888899998864 3333433 6788999999999


Q ss_pred             CCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCC--CCCCCcccCCCCccEEEEcCCccchhhhhh
Q 018079          160 LCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS--SSSSPSVIAFPKLKSLEIDGMKELEEWNYR  236 (361)
Q Consensus       160 ~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~  236 (361)
                      +| .+..++.+..++ |+.|+++++. +...+. +.....+..+.++.  ....+.+..+++|+.|+++++. +...+  
T Consensus       186 ~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~-l~~~~--  259 (466)
T 1o6v_A          186 SN-KVSDISVLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ-ISNLA--  259 (466)
T ss_dssp             SS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC-CCCCG--
T ss_pred             CC-cCCCChhhccCCCCCEEEecCCc-cccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc-cccch--
Confidence            87 466666677888 9999998754 444332 22222222222221  1223456667777777777653 33222  


Q ss_pred             hccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCC-----CcccCCcccccccCC-----------CCC
Q 018079          237 ITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE-----NMEELPILEDHRTTD-----------IPR  300 (361)
Q Consensus       237 ~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~-----~l~~lp~L~~L~l~~-----------l~~  300 (361)
                           .+..+++|+.|+++++ .+..++. +..+++|+.|++++|.     .+..+++|+.|++++           +++
T Consensus       260 -----~~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  332 (466)
T 1o6v_A          260 -----PLSGLTKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTK  332 (466)
T ss_dssp             -----GGTTCTTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTT
T ss_pred             -----hhhcCCCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchhhccCcc
Confidence                 2456788888888875 5666654 6678888888888752     233455666666655           677


Q ss_pred             ccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          301 LSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       301 L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      |+.|++++| .++.++ .+..+++|+.|++++|+-
T Consensus       333 L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n~l  365 (466)
T 1o6v_A          333 LQRLFFYNN-KVSDVS-SLANLTNINWLSAGHNQI  365 (466)
T ss_dssp             CCEEECCSS-CCCCCG-GGTTCTTCCEEECCSSCC
T ss_pred             CCEeECCCC-ccCCch-hhccCCCCCEEeCCCCcc
Confidence            777777775 555554 467778888888887753

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=4.8e-19  Score=165.83  Aligned_cols=298  Identities=15%  Similarity=0.108  Sum_probs=153.2

Q ss_pred             CceeecCCCCcccccCcc-CCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      +++|+++++ .+..+|.. +.++++|++|++.++.... ....+..++ |+ .+.+.+..    .....+..++++++|+
T Consensus        47 l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           47 QKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ-KLYMGFNA----IRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             CSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred             ceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcC-EEECCCCC----CCcCCHHHhcCCCCCC
Confidence            467777777 77777766 5777888888884332221 001122222 22 33332211    0011112355666666


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCchhhhcCccCCee
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPKWLTSLANLREL  156 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L  156 (361)
                      +|+++.|.....+...+...++++.|++..+.       ...+ ...+..+++|++|+++++....++  +..+++|+.|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L  191 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA  191 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEE
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCc-------cCccChhhccCCCCCCEEECCCCcCCccc--ccccccccee
Confidence            66666665544333334445555555555433       1111 223444555555555555443332  2344445555


Q ss_pred             eecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC--CCCCCCcccCCCCccEEEEcCCccchhh
Q 018079          157 NLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS--SSSSSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       157 ~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      +++++ .+..+   ...+ |+.|+++++. +..++....  ..+..+.+.  .....+.+..+++|++|+++++ .+...
T Consensus       192 ~l~~n-~l~~~---~~~~~L~~L~l~~n~-l~~~~~~~~--~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~  263 (390)
T 3o6n_A          192 NVSYN-LLSTL---AIPIAVEELDASHNS-INVVRGPVN--VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKI  263 (390)
T ss_dssp             ECCSS-CCSEE---ECCSSCSEEECCSSC-CCEEECCCC--SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEE
T ss_pred             ecccc-ccccc---CCCCcceEEECCCCe-eeecccccc--ccccEEECCCCCCcccHHHcCCCCccEEECCCC-cCCCc
Confidence            44443 12111   1122 5555555422 333322111  111111111  1111234556777777777764 33332


Q ss_pred             hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079          234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK  313 (361)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~  313 (361)
                      ..     ..+..+++|+.|+++++ .++.++..+..+++|++|+++++ .+..+|.    .+..+++|+.|++++| .++
T Consensus       264 ~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~----~~~~l~~L~~L~L~~N-~i~  331 (390)
T 3o6n_A          264 MY-----HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER----NQPQFDRLENLYLDHN-SIV  331 (390)
T ss_dssp             ES-----GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG----GHHHHTTCSEEECCSS-CCC
T ss_pred             Ch-----hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCc----cccccCcCCEEECCCC-ccc
Confidence            21     24456777777777774 56666666666777777777775 4555553    3445788999999885 466


Q ss_pred             ccccccCCCCCCCeEEEeCCcc
Q 018079          314 VLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       314 ~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      .++  +..+++|+.|++++++-
T Consensus       332 ~~~--~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          332 TLK--LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CCC--CCTTCCCSEEECCSSCE
T ss_pred             eeC--chhhccCCEEEcCCCCc
Confidence            665  66778999999998864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.79  E-value=2e-18  Score=165.86  Aligned_cols=284  Identities=21%  Similarity=0.184  Sum_probs=191.3

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceEE
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLH   80 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~   80 (361)
                      .++.++. .+..+|.++.  .++++|++.+..... ....+..++ |+ .+.+.+-    ......+..+.++++|+.|+
T Consensus        15 ~v~c~~~-~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n----~i~~~~~~~~~~l~~L~~L~   86 (477)
T 2id5_A           15 AVLCHRK-RFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLE-ELELNEN----IVSAVEPGAFNNLFNLRTLG   86 (477)
T ss_dssp             EEECCSC-CCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCC-EEECTTS----CCCEECTTTTTTCTTCCEEE
T ss_pred             EEEeCCC-CcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCC-EEECCCC----ccCEeChhhhhCCccCCEEE
Confidence            5666766 7889998765  689999995443321 111222333 33 4444331    11111234578889999999


Q ss_pred             EEecCCCCCCcchhhhhhcccccccccccccccchhhHH-HHHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeee
Q 018079           81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQ-LLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNL  158 (361)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l  158 (361)
                      ++.|.........+...++++.|++..+.       ... ....+..+++|++|++.++.... .+..+..+++|+.|++
T Consensus        87 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           87 LRSNRLKLIPLGVFTGLSNLTKLDISENK-------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             CCSSCCCSCCTTSSTTCTTCCEEECTTSC-------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             CCCCcCCccCcccccCCCCCCEEECCCCc-------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence            99887766655566777788888887654       211 13456677888888888877655 3445667888888888


Q ss_pred             cCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079          159 SLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY  235 (361)
Q Consensus       159 ~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~  235 (361)
                      ++| .+..++.  +..++ |+.|+++++. +..++...                   +..+++|+.|+++++..+..++.
T Consensus       160 ~~n-~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~-------------------~~~l~~L~~L~l~~~~~~~~~~~  218 (477)
T 2id5_A          160 EKC-NLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYS-------------------FKRLYRLKVLEISHWPYLDTMTP  218 (477)
T ss_dssp             ESC-CCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTC-------------------SCSCTTCCEEEEECCTTCCEECT
T ss_pred             CCC-cCcccChhHhcccCCCcEEeCCCCc-CcEeChhh-------------------cccCcccceeeCCCCccccccCc
Confidence            886 5555554  67777 8888887643 45444322                   44788899999988776665544


Q ss_pred             hhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCc
Q 018079          236 RITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKV  314 (361)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~  314 (361)
                            ......+|+.|+++++ .++.+|. .+..+++|+.|+++++. +..++.   -.+.++++|+.|++.++ .++.
T Consensus       219 ------~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~---~~~~~l~~L~~L~L~~n-~l~~  286 (477)
T 2id5_A          219 ------NCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG---SMLHELLRLQEIQLVGG-QLAV  286 (477)
T ss_dssp             ------TTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT---TSCTTCTTCCEEECCSS-CCSE
T ss_pred             ------ccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh---hhccccccCCEEECCCC-ccce
Confidence                  2224458999999886 5777774 46678999999998853 444432   14566899999999986 4555


Q ss_pred             c-ccccCCCCCCCeEEEeCCc
Q 018079          315 L-PDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       315 l-~~~l~~l~~L~~L~l~~c~  334 (361)
                      + |..+..+++|+.|++++|.
T Consensus       287 ~~~~~~~~l~~L~~L~L~~N~  307 (477)
T 2id5_A          287 VEPYAFRGLNYLRVLNVSGNQ  307 (477)
T ss_dssp             ECTTTBTTCTTCCEEECCSSC
T ss_pred             ECHHHhcCcccCCEEECCCCc
Confidence            4 5788999999999999984

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=2e-19  Score=183.13  Aligned_cols=305  Identities=14%  Similarity=0.074  Sum_probs=207.9

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeee-cCC--CCCcccc-------cc-eeceeEEcCCCCCCChHHHHHh-
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVG-GGV--DGSNTGR-------LQ-LRGECSIEGLCNVSHVDEAERL-   68 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~-~~~--~~~~l~~-------L~-L~~~l~l~~l~~~~~~~~~~~~-   68 (361)
                      |++|++++|.....+|..++++++|++|++.++. ...  -...+..       ++ |+ .+.+.+..- .    .++. 
T Consensus       493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~-~L~Ls~N~L-~----~ip~~  566 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ-IFYMGYNNL-E----EFPAS  566 (876)
T ss_dssp             CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC-EEECCSSCC-C----BCCCH
T ss_pred             CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc-EEEeeCCcC-C----ccCCh
Confidence            6899999995577899999999999999995443 110  0000111       11 22 333333111 1    1222 


Q ss_pred             -hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCC-ccEEEecccCCCCCchh
Q 018079           69 -QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLN-VEELWIIFYGGNIFPKW  146 (361)
Q Consensus        69 -~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~  146 (361)
                       .++++++|+.|+++.|.....+  .+...++++.|++..+.       ...++..+..+++ |++|++++|....+|.+
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~-------l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~  637 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQ-------IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNI  637 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSC-------CSCCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred             hhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCc-------cccchHHHhhccccCCEEECcCCCCCcCchh
Confidence             5788999999999988876433  67788889999998776       3355667788888 99999999887778877


Q ss_pred             hhcCc--cCCeeeecCCCCCCCCCCC----C--CCc-cceEeccccccceeeccccc-ccCCCCCCCCCCCC--CCC---
Q 018079          147 LTSLA--NLRELNLSLCFNCEHLPQL----G--KLP-LEKLQLKNLKSVKRVGNEFL-GIEESSEDGPSSSS--SSP---  211 (361)
Q Consensus       147 ~~~l~--~L~~L~l~~~~~~~~l~~l----~--~l~-L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~~--~~~---  211 (361)
                      +..+.  +|+.|++++|.-...+|.+    +  ..+ |+.|+++++. +..++..++ ....+..+.++...  .++   
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~  716 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENS  716 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence            66554  4888888887443333322    2  334 7888887643 555555443 22233333333111  111   


Q ss_pred             ------cccCCCCccEEEEcCCccchhhhhhhccccccc--cCCCccEEEEecCCCCCccchhccCCCCcceEeeccC--
Q 018079          212 ------SVIAFPKLKSLEIDGMKELEEWNYRITRKENIS--IMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC--  281 (361)
Q Consensus       212 ------~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c--  281 (361)
                            ....+++|+.|+++++ .+..++.      .+.  .+++|+.|+++++ .+..+|..+..+++|+.|+++++  
T Consensus       717 ~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~------~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~  788 (876)
T 4ecn_A          717 LKPKDGNYKNTYLLTTIDLRFN-KLTSLSD------DFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRD  788 (876)
T ss_dssp             SSCTTSCCTTGGGCCEEECCSS-CCCCCCG------GGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBC
T ss_pred             hccccccccccCCccEEECCCC-CCccchH------HhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCC
Confidence                  1223449999999986 5665554      343  7999999999995 67789999999999999999873  


Q ss_pred             ----CCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          282 ----ENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       282 ----~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                          .-...+|.    .+.++++|+.|++++|. +..+|..+.  ++|+.|++++|+..
T Consensus       789 ls~N~l~~~ip~----~l~~L~~L~~L~Ls~N~-L~~Ip~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          789 AEGNRILRQWPT----GITTCPSLIQLQIGSND-IRKVDEKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             TTCCBCCCCCCT----TGGGCSSCCEEECCSSC-CCBCCSCCC--SSSCEEECCSCTTC
T ss_pred             cccccccccChH----HHhcCCCCCEEECCCCC-CCccCHhhc--CCCCEEECCCCCCC
Confidence                33445664    56779999999999975 499997765  79999999999753

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=2.2e-18  Score=164.61  Aligned_cols=288  Identities=15%  Similarity=0.127  Sum_probs=177.4

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|+++++ .+..+| +++.+++|++|++.++... .. .+..++ ++ .+.+.+.. +...      .++++++|++|
T Consensus        44 L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~-~~-~~~~l~~L~-~L~Ls~N~-l~~~------~~~~l~~L~~L  111 (457)
T 3bz5_A           44 LTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNIT-TL-DLSQNTNLT-YLACDSNK-LTNL------DVTPLTKLTYL  111 (457)
T ss_dssp             CCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCS-CC-CCTTCTTCS-EEECCSSC-CSCC------CCTTCTTCCEE
T ss_pred             CCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCC-eE-ccccCCCCC-EEECcCCC-Ccee------ecCCCCcCCEE
Confidence            688999998 888887 6899999999999655544 21 133333 33 44443311 1111      26788888888


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeee
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNL  158 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l  158 (361)
                      +++.|.....   ++...++++.+++..+.       ...+  .+..+++|++|++++|.... +  .+..+++|+.|++
T Consensus       112 ~L~~N~l~~l---~~~~l~~L~~L~l~~N~-------l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  177 (457)
T 3bz5_A          112 NCDTNKLTKL---DVSQNPLLTYLNCARNT-------LTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC  177 (457)
T ss_dssp             ECCSSCCSCC---CCTTCTTCCEEECTTSC-------CSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred             ECCCCcCCee---cCCCCCcCCEEECCCCc-------ccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence            8888766543   25666777777777654       2111  25566777777777764322 3  2456677777777


Q ss_pred             cCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCC--CCCCcccCCCCccEEEEcCCccchhhhh
Q 018079          159 SLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS--SSSPSVIAFPKLKSLEIDGMKELEEWNY  235 (361)
Q Consensus       159 ~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~L~~L~L~~~~~l~~~~~  235 (361)
                      ++| .+..++ +..++ |+.|+++++. ++.++  +.....+..+.++..  ..++ +..+++|+.|+++++ .+...+.
T Consensus       178 s~n-~l~~l~-l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N-~l~~~~~  250 (457)
T 3bz5_A          178 SFN-KITELD-VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVN-PLTELDV  250 (457)
T ss_dssp             CSS-CCCCCC-CTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCCC
T ss_pred             CCC-ccceec-cccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCC-cCCCcCH
Confidence            775 455554 56666 7777776533 33331  111111222222200  1122 456677777777764 3333221


Q ss_pred             hhccccccccCCCccEE----------EEecCCCCCccchhccCCCCcceEeeccCCCcccCC----cccccccCCCCCc
Q 018079          236 RITRKENISIMPRLSSL----------EVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELP----ILEDHRTTDIPRL  301 (361)
Q Consensus       236 ~~~~~~~~~~l~~L~~L----------~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp----~L~~L~l~~l~~L  301 (361)
                              ..+++|+.|          ++++|.....+|  ...+++|+.|++++|..++.+|    .|+.++++++++|
T Consensus       251 --------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L  320 (457)
T 3bz5_A          251 --------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKL  320 (457)
T ss_dssp             --------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred             --------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccC
Confidence                    234444444          444443333444  3457889999999988777665    6888899999999


Q ss_pred             cEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          302 SSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       302 ~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      +.|+++++ .++.++  +.++++|+.|+++++.
T Consensus       321 ~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~  350 (457)
T 3bz5_A          321 VYLYLNNT-ELTELD--VSHNTKLKSLSCVNAH  350 (457)
T ss_dssp             CEEECTTC-CCSCCC--CTTCTTCSEEECCSSC
T ss_pred             CEEECCCC-cccccc--cccCCcCcEEECCCCC
Confidence            99999984 667774  8889999999998774

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=2.1e-19  Score=176.36  Aligned_cols=197  Identities=18%  Similarity=0.202  Sum_probs=102.0

Q ss_pred             CCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079          125 QPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG  203 (361)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  203 (361)
                      ..+++|++|++.++....+|.++..+ +|+.|++++| .+..+|. ..++ |+.|+++++......+.  .....+..+.
T Consensus       279 ~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~-~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~  353 (570)
T 2z63_A          279 NCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC-KFGQFPT-LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLD  353 (570)
T ss_dssp             GGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESC-BCSSCCB-CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEE
T ss_pred             cCcCcccEEEecCccchhhhhhhccC-CccEEeeccC-cccccCc-ccccccCEEeCcCCcccccccc--ccCCCCCEEe
Confidence            34456666666666555566666666 6677776665 3334443 3455 66666655432111111  0000011111


Q ss_pred             CCCCCC------CCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-c-hhccCCCCcce
Q 018079          204 PSSSSS------SPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-P-DYLLQMTVLQN  275 (361)
Q Consensus       204 ~~~~~~------~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~-~~~~~l~~L~~  275 (361)
                      ++....      ...+..+++|++|+++++ .+..++.      .+..+++|+.|++.++ .+... + ..+..+++|++
T Consensus       354 l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~------~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          354 LSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSS------NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             CCSSCCBEEEEEEHHHHTCSCCCEEECCSC-SEEEEEE------EEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCE
T ss_pred             CcCCccCccccccccccccCccCEEECCCC-ccccccc------cccccCCCCEEEccCC-ccccccchhhhhcCCCCCE
Confidence            110000      011334555555555553 2222222      2456777777777664 33333 2 24556777777


Q ss_pred             EeeccCCC-------cccCCcccccccCC--------------CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          276 LRIFFCEN-------MEELPILEDHRTTD--------------IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       276 L~l~~c~~-------l~~lp~L~~L~l~~--------------l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      |++++|.-       +..+++|+.|++++              +++|+.|++++|......|..+..+++|+.|++++|.
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            77776532       23345566555543              5677777777753333335677777888888887774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=168.70  Aligned_cols=138  Identities=22%  Similarity=0.220  Sum_probs=84.8

Q ss_pred             CCCc-cceEecccccccee-ecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCC
Q 018079          171 GKLP-LEKLQLKNLKSVKR-VGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR  248 (361)
Q Consensus       171 ~~l~-L~~L~l~~~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~  248 (361)
                      ..++ |++|+++++. +.. .+..                    +..+++|++|+++++. +..++. +  ...+..+++
T Consensus       321 ~~l~~L~~L~Ls~n~-l~~~~~~~--------------------~~~l~~L~~L~L~~N~-l~~l~~-~--~~~~~~l~~  375 (520)
T 2z7x_B          321 SKISPFLHLDFSNNL-LTDTVFEN--------------------CGHLTELETLILQMNQ-LKELSK-I--AEMTTQMKS  375 (520)
T ss_dssp             SSCCCCCEEECCSSC-CCTTTTTT--------------------CCCCSSCCEEECCSSC-CCBHHH-H--HHHHTTCTT
T ss_pred             hhCCcccEEEeECCc-cChhhhhh--------------------hccCCCCCEEEccCCc-cCcccc-c--hHHHhhCCC
Confidence            5667 8888888754 333 2222                    3467777777777643 332211 0  113456777


Q ss_pred             ccEEEEecCCCCCc-cchh-ccCCCCcceEeeccCCCccc----C-CcccccccCC------------CCCccEEEEecC
Q 018079          249 LSSLEVSSCNKLKA-LPDY-LLQMTVLQNLRIFFCENMEE----L-PILEDHRTTD------------IPRLSSLRIGYC  309 (361)
Q Consensus       249 L~~L~l~~c~~l~~-l~~~-~~~l~~L~~L~l~~c~~l~~----l-p~L~~L~l~~------------l~~L~~L~l~~c  309 (361)
                      |+.|+++++ .+.. +|.. +..+++|++|++++|.--..    + ++|+.|++++            +++|+.|++++|
T Consensus       376 L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          376 LQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASN  454 (520)
T ss_dssp             CCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCC
Confidence            777777775 3444 6654 44566777777776532111    2 2455554443            788899999885


Q ss_pred             CCCCccccc-cCCCCCCCeEEEeCCcc
Q 018079          310 PKLKVLPDC-LLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       310 ~~l~~l~~~-l~~l~~L~~L~l~~c~~  335 (361)
                       .++.+|.. +..+++|++|++++++-
T Consensus       455 -~l~~l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          455 -QLKSVPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             -cCCccCHHHhccCCcccEEECcCCCC
Confidence             67788865 78888999999988864

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.78  E-value=5.6e-19  Score=172.60  Aligned_cols=115  Identities=24%  Similarity=0.324  Sum_probs=66.4

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc-------
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME-------  285 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~-------  285 (361)
                      ++.+++|++|+++++ .++.++..   ...+..+++|+.|+++++ .++.+|..+..+++|++|+++++. ++       
T Consensus       357 ~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~  430 (549)
T 2z81_A          357 KGAWPSLQTLVLSQN-HLRSMQKT---GEILLTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIP  430 (549)
T ss_dssp             TTSSTTCCEEECTTS-CCCCHHHH---HHHGGGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSC
T ss_pred             hhccccCcEEEccCC-cccccccc---hhhhhcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cccccchhc
Confidence            446777888888774 44433310   123456778888888775 566777766667777777777643 22       


Q ss_pred             ------------------cCCcccccccCC-----------CCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079          286 ------------------ELPILEDHRTTD-----------IPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       286 ------------------~lp~L~~L~l~~-----------l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~  334 (361)
                                        .+|+|++|++++           +++|+.|++++| .++.++ ..+..+++|+.|++++|+
T Consensus       431 ~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          431 QTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             TTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence                              223333333333           445555555553 333433 345666666666666655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=5.4e-19  Score=174.80  Aligned_cols=279  Identities=13%  Similarity=0.059  Sum_probs=180.7

Q ss_pred             cccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCC
Q 018079           11 SLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDED   89 (361)
Q Consensus        11 ~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~   89 (361)
                      .+...+..+..+.+|++|++.++... ....+..+. ++ .+.+.+... ...    + .+ ++++|+.|+++.|.....
T Consensus       273 ~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~~l~~~~~L~-~L~l~~n~l-~~l----p-~~-~l~~L~~L~l~~n~~~~~  343 (606)
T 3vq2_A          273 DFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQ-SLSIIRCQL-KQF----P-TL-DLPFLKSLTLTMNKGSIS  343 (606)
T ss_dssp             TCCGGGGSCGGGTTCSEEEEESCCCC-CCCCCCTTCCCS-EEEEESCCC-SSC----C-CC-CCSSCCEEEEESCSSCEE
T ss_pred             cccccccccccCCCCCEEEecCccch-hhhhccccccCC-EEEcccccC-ccc----c-cC-CCCccceeeccCCcCccc
Confidence            33333333677777777777555443 222233322 33 444443222 111    1 23 677788888877743221


Q ss_pred             CcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCC-
Q 018079           90 WRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLP-  168 (361)
Q Consensus        90 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~-  168 (361)
                        ..+...++++.+++..+.-..    ....+..+..+++|++|++++|....+|..+..+++|+.|++++|.-....+ 
T Consensus       344 --~~~~~l~~L~~L~ls~n~l~~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  417 (606)
T 3vq2_A          344 --FKKVALPSLSYLDLSRNALSF----SGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF  417 (606)
T ss_dssp             --CCCCCCTTCCEEECCSSCEEE----EEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred             --hhhccCCCCCEEECcCCccCC----CcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh
Confidence              134455666666666543100    0001344567788999999988876677777888999999999874333333 


Q ss_pred             -CCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccC
Q 018079          169 -QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM  246 (361)
Q Consensus       169 -~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l  246 (361)
                       .+..++ |+.|+++++. +.......                   +..+++|++|+++++. +.....    +..+..+
T Consensus       418 ~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n~-l~~~~~----~~~~~~l  472 (606)
T 3vq2_A          418 SAFLSLEKLLYLDISYTN-TKIDFDGI-------------------FLGLTSLNTLKMAGNS-FKDNTL----SNVFANT  472 (606)
T ss_dssp             TTTTTCTTCCEEECTTSC-CEECCTTT-------------------TTTCTTCCEEECTTCE-EGGGEE----CSCCTTC
T ss_pred             hhhhccccCCEEECcCCC-CCccchhh-------------------hcCCCCCCEEECCCCc-CCCcch----HHhhccC
Confidence             367788 9999998765 44433222                   4478999999999864 433111    2356688


Q ss_pred             CCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCC-C
Q 018079          247 PRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTT-T  324 (361)
Q Consensus       247 ~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~-~  324 (361)
                      ++|+.|++++| .++.+ |..+..+++|++|++++|.--...|.    .+.++++|++|++++| .++.+|..+..++ +
T Consensus       473 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~  546 (606)
T 3vq2_A          473 TNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS----HYNQLYSLSTLDCSFN-RIETSKGILQHFPKS  546 (606)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGG----GTTTCTTCCEEECTTS-CCCCEESCGGGSCTT
T ss_pred             CCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHH----HccCCCcCCEEECCCC-cCcccCHhHhhhccc
Confidence            99999999997 45544 56678899999999999743333343    5677899999999996 5889998888887 5


Q ss_pred             CCeEEEeCCcc
Q 018079          325 LQKLTIWGCPL  335 (361)
Q Consensus       325 L~~L~l~~c~~  335 (361)
                      |+.++++++|-
T Consensus       547 L~~l~l~~N~~  557 (606)
T 3vq2_A          547 LAFFNLTNNSV  557 (606)
T ss_dssp             CCEEECCSCCC
T ss_pred             CcEEEccCCCc
Confidence            99999998864

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.76  E-value=5.6e-19  Score=160.53  Aligned_cols=183  Identities=13%  Similarity=0.083  Sum_probs=110.9

Q ss_pred             HHhcCCCCCccEEEecccCCC-CCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc--cceEeccccccce-eecccccc
Q 018079          121 LEALQPPLNVEELWIIFYGGN-IFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP--LEKLQLKNLKSVK-RVGNEFLG  195 (361)
Q Consensus       121 ~~~l~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~--L~~L~l~~~~~l~-~l~~~~~~  195 (361)
                      +..+..+++|++|+++++... .+|.++..+++|+.|+++++.-...+|. +..++  |+.|+++++. +. .++..   
T Consensus       118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~---  193 (313)
T 1ogq_A          118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPT---  193 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGG---
T ss_pred             CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChH---
Confidence            345566677777777776655 3666777777777777777632224554 55554  7777777643 33 23322   


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcce
Q 018079          196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQN  275 (361)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~  275 (361)
                                       +..++ |++|+++++. +....     ...+..+++|+.|+++++ .++..+..+..+++|++
T Consensus       194 -----------------~~~l~-L~~L~Ls~N~-l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~  248 (313)
T 1ogq_A          194 -----------------FANLN-LAFVDLSRNM-LEGDA-----SVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNG  248 (313)
T ss_dssp             -----------------GGGCC-CSEEECCSSE-EEECC-----GGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCE
T ss_pred             -----------------HhCCc-ccEEECcCCc-ccCcC-----CHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCE
Confidence                             22444 7777777643 33221     124556777777777774 34433334566777777


Q ss_pred             EeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccch
Q 018079          276 LRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLE  337 (361)
Q Consensus       276 L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~  337 (361)
                      |+++++.--..+|.    .+..+++|+.|++++|.....+|.. ..+++|+.+++.+++.+.
T Consensus       249 L~Ls~N~l~~~~p~----~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          249 LDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EECCSSCCEECCCG----GGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEE
T ss_pred             EECcCCcccCcCCh----HHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCcc
Confidence            77777543335554    4556777777777775443456654 667777777777777543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=3.7e-18  Score=168.67  Aligned_cols=298  Identities=15%  Similarity=0.108  Sum_probs=152.7

Q ss_pred             CceeecCCCCcccccCcc-CCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      +++|+++++ .+..+|+. ++.+++|++|++.++.... ....+..++ |+ .+.+.+..    .....+..++++++|+
T Consensus        53 l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           53 QKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ-KLYMGFNA----IRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             CSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCC-EEECCSSC----CCCCCTTTTTTCTTCC
T ss_pred             ceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCC-EEECCCCc----CCCCCHHHHcCCCCCC
Confidence            456777777 67777765 5677788888874333221 001122222 22 33332211    0011112345666666


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCCCchhhhcCccCCee
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNIFPKWLTSLANLREL  156 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L  156 (361)
                      .|+++.|.....+...+...++++.|++..+.       ...+ +..+..+++|++|++++|....++  ++.+++|+.|
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L  197 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-------LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHA  197 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-------CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEE
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-------CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhh
Confidence            66666665544333334444455555554432       1111 223444455555555554443332  2334444444


Q ss_pred             eecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC--CCCCCCcccCCCCccEEEEcCCccchhh
Q 018079          157 NLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS--SSSSSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       157 ~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      +++++ .+..+   ...+ |+.|+++++. +..++..+.  ..+..+.++  .....+.+..+++|+.|+++++ .+...
T Consensus       198 ~l~~n-~l~~l---~~~~~L~~L~ls~n~-l~~~~~~~~--~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~  269 (597)
T 3oja_B          198 NVSYN-LLSTL---AIPIAVEELDASHNS-INVVRGPVN--VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKI  269 (597)
T ss_dssp             ECCSS-CCSEE---ECCTTCSEEECCSSC-CCEEECSCC--SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEE
T ss_pred             hcccC-ccccc---cCCchhheeeccCCc-ccccccccC--CCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCC
Confidence            44443 12111   1122 5555555422 333322211  011111111  1111234566777777777764 33332


Q ss_pred             hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079          234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK  313 (361)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~  313 (361)
                      ..     ..+..+++|+.|+++++ .+..+|..+..+++|+.|++++| .+..+|.    .+..+++|+.|++++| .+.
T Consensus       270 ~~-----~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~----~~~~l~~L~~L~L~~N-~l~  337 (597)
T 3oja_B          270 MY-----HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER----NQPQFDRLENLYLDHN-SIV  337 (597)
T ss_dssp             ES-----GGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGG----GHHHHTTCSEEECCSS-CCC
T ss_pred             CH-----HHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCc----ccccCCCCCEEECCCC-CCC
Confidence            21     24556777788877774 56667766666777888887775 4445553    3455788999999985 456


Q ss_pred             ccccccCCCCCCCeEEEeCCcc
Q 018079          314 VLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       314 ~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      .++  +..+++|+.|++++|+.
T Consensus       338 ~~~--~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          338 TLK--LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             CCC--CCTTCCCSEEECCSSCE
T ss_pred             CcC--hhhcCCCCEEEeeCCCC
Confidence            665  66778999999998874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.76  E-value=1.1e-17  Score=159.63  Aligned_cols=238  Identities=20%  Similarity=0.265  Sum_probs=175.6

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ   82 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~   82 (361)
                      .++.++. .+..+|.++.  .++++|++       ..+.+..+.                    +..+.++++|+.|+++
T Consensus        58 ~v~c~~~-~l~~iP~~~~--~~l~~L~L-------~~n~i~~~~--------------------~~~~~~l~~L~~L~Ls  107 (452)
T 3zyi_A           58 KVVCTRR-GLSEVPQGIP--SNTRYLNL-------MENNIQMIQ--------------------ADTFRHLHHLEVLQLG  107 (452)
T ss_dssp             EEECCSS-CCSSCCSCCC--TTCSEEEC-------CSSCCCEEC--------------------TTTTTTCTTCCEEECC
T ss_pred             EEEECCC-CcCccCCCCC--CCccEEEC-------cCCcCceEC--------------------HHHcCCCCCCCEEECC
Confidence            3444544 6667776554  56777777       444444331                    1236788899999998


Q ss_pred             ecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCC
Q 018079           83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLC  161 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~  161 (361)
                      .|....                              .....+..+++|++|++++|....+|.. +..+++|+.|+++++
T Consensus       108 ~n~i~~------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A          108 RNSIRQ------------------------------IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             SSCCCE------------------------------ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred             CCccCC------------------------------cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence            886432                              1134677889999999999987776654 668999999999996


Q ss_pred             CCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079          162 FNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT  238 (361)
Q Consensus       162 ~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~  238 (361)
                       .+..++.  +..++ |+.|+++++..+..++...                   +..+++|++|+++++ .+..++    
T Consensus       158 -~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~----  212 (452)
T 3zyi_A          158 -PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-------------------FEGLFNLKYLNLGMC-NIKDMP----  212 (452)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-------------------TTTCTTCCEEECTTS-CCSSCC----
T ss_pred             -CcceeCHhHHhcCCcccEEeCCCCCCccccChhh-------------------ccCCCCCCEEECCCC-cccccc----
Confidence             5666665  78889 9999999988888877654                   447899999999985 455443    


Q ss_pred             cccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-
Q 018079          239 RKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-  316 (361)
Q Consensus       239 ~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-  316 (361)
                         .+..+++|+.|+++++ .++.+ |..+..+++|+.|+++++ .+..++.   -.+.++++|+.|+++++ .++.++ 
T Consensus       213 ---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~  283 (452)
T 3zyi_A          213 ---NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNS-QVSLIER---NAFDGLASLVELNLAHN-NLSSLPH  283 (452)
T ss_dssp             ---CCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTS-CCCEECT---TTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred             ---cccccccccEEECcCC-cCcccCcccccCccCCCEEEeCCC-cCceECH---HHhcCCCCCCEEECCCC-cCCccCh
Confidence               3557899999999986 56655 667788999999999986 3433321   14667899999999985 677777 


Q ss_pred             cccCCCCCCCeEEEeCCc
Q 018079          317 DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       317 ~~l~~l~~L~~L~l~~c~  334 (361)
                      ..+..+++|+.|+++++|
T Consensus       284 ~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TSSTTCTTCCEEECCSSC
T ss_pred             HHhccccCCCEEEccCCC
Confidence            567889999999999886

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.76  E-value=1.1e-17  Score=162.56  Aligned_cols=304  Identities=16%  Similarity=0.062  Sum_probs=184.7

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCCCC-Ccccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDG-SNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~-~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      ++|+++++ .+..+|.++.  ++|++|++.++...... ..+..++ |+ .+.+.+-.    .....+..++++++|++|
T Consensus         3 ~~l~ls~n-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDRSKN-GLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLR-ILIISHNR----IQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEECTTS-CCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCC-EEECCSSC----CCEEEGGGGTTCTTCCEE
T ss_pred             ceEecCCC-Cccccccccc--ccccEEECCCCcccccChhhcccccccc-EEecCCCc----cCCcChHHhhcccCCCEE
Confidence            57899999 8999998876  89999999655433111 1222233 33 44443311    111223457889999999


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHH--HHHhcCCCCCccEEEecccCCCCCchhhhcCccC--Ce
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQ--LLEALQPPLNVEELWIIFYGGNIFPKWLTSLANL--RE  155 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L--~~  155 (361)
                      ++++|.....+..   ..++++.|++..+.       ...  ++..+..+++|++|+++++....  ..+..+++|  +.
T Consensus        75 ~Ls~N~l~~lp~~---~l~~L~~L~L~~N~-------l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~  142 (520)
T 2z7x_B           75 DLSHNKLVKISCH---PTVNLKHLDLSFNA-------FDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISK  142 (520)
T ss_dssp             ECCSSCCCEEECC---CCCCCSEEECCSSC-------CSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEE
T ss_pred             ecCCCceeecCcc---ccCCccEEeccCCc-------cccccchhhhccCCcceEEEecCcccch--hhccccccceeeE
Confidence            9998876543222   66777888887764       222  24567778888888888876543  334566677  88


Q ss_pred             eeecCCCC--CCCCCC-C--------------------------CCCc-cceEeccccc---------------------
Q 018079          156 LNLSLCFN--CEHLPQ-L--------------------------GKLP-LEKLQLKNLK---------------------  184 (361)
Q Consensus       156 L~l~~~~~--~~~l~~-l--------------------------~~l~-L~~L~l~~~~---------------------  184 (361)
                      |++++|.-  ....|. +                          ..++ |+.++++++.                     
T Consensus       143 L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L  222 (520)
T 2z7x_B          143 VLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL  222 (520)
T ss_dssp             EEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTC
T ss_pred             EEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccch
Confidence            88877643  111111 1                          1234 4444444321                     


Q ss_pred             -------------------------cce-----------eecccccc-----cCC-------------------------
Q 018079          185 -------------------------SVK-----------RVGNEFLG-----IEE-------------------------  198 (361)
Q Consensus       185 -------------------------~l~-----------~l~~~~~~-----~~~-------------------------  198 (361)
                                               .++           .++..++.     ...                         
T Consensus       223 ~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~  302 (520)
T 2z7x_B          223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM  302 (520)
T ss_dssp             CEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTC
T ss_pred             hhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccC
Confidence                                     111           11111100     000                         


Q ss_pred             -CCCCCCCCCCC--CCcccCCCCccEEEEcCCccchh-hhhhhccccccccCCCccEEEEecCCCCCc---cchhccCCC
Q 018079          199 -SSEDGPSSSSS--SPSVIAFPKLKSLEIDGMKELEE-WNYRITRKENISIMPRLSSLEVSSCNKLKA---LPDYLLQMT  271 (361)
Q Consensus       199 -~~~~~~~~~~~--~~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~---l~~~~~~l~  271 (361)
                       +..+.++....  .+....+++|++|+++++. +.. .+      ..+..+++|+.|+++++ .++.   +|..+..++
T Consensus       303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~  374 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNL-LTDTVF------ENCGHLTELETLILQMN-QLKELSKIAEMTTQMK  374 (520)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSC-CCTTTT------TTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCT
T ss_pred             ceeEEEcCCCccccccchhhCCcccEEEeECCc-cChhhh------hhhccCCCCCEEEccCC-ccCccccchHHHhhCC
Confidence             00000000000  0001567788888888753 333 22      24567899999999886 4553   456678899


Q ss_pred             CcceEeeccCCC--------cccCCcccccccCC----------C-CCccEEEEecCCCCCccccccCCCCCCCeEEEeC
Q 018079          272 VLQNLRIFFCEN--------MEELPILEDHRTTD----------I-PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWG  332 (361)
Q Consensus       272 ~L~~L~l~~c~~--------l~~lp~L~~L~l~~----------l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~  332 (361)
                      +|++|+++++.-        +..+++|++|++++          + ++|+.|++++| .++.+|..+..+++|++|++++
T Consensus       375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~  453 (520)
T 2z7x_B          375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVAS  453 (520)
T ss_dssp             TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCC
Confidence            999999988632        23345788888776          2 68999999986 6779998788999999999999


Q ss_pred             Cc
Q 018079          333 CP  334 (361)
Q Consensus       333 c~  334 (361)
                      |.
T Consensus       454 N~  455 (520)
T 2z7x_B          454 NQ  455 (520)
T ss_dssp             SC
T ss_pred             Cc
Confidence            85

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=158.26  Aligned_cols=238  Identities=21%  Similarity=0.304  Sum_probs=176.2

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ   82 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~   82 (361)
                      .++.++. .+..+|.++.  .++++|++       ..+.+..+.                    ...+.++++|+.|+++
T Consensus        47 ~v~c~~~-~l~~iP~~~~--~~l~~L~L-------~~n~i~~~~--------------------~~~~~~l~~L~~L~Ls   96 (440)
T 3zyj_A           47 KVICVRK-NLREVPDGIS--TNTRLLNL-------HENQIQIIK--------------------VNSFKHLRHLEILQLS   96 (440)
T ss_dssp             EEECCSC-CCSSCCSCCC--TTCSEEEC-------CSCCCCEEC--------------------TTTTSSCSSCCEEECC
T ss_pred             EEEeCCC-CcCcCCCCCC--CCCcEEEc-------cCCcCCeeC--------------------HHHhhCCCCCCEEECC
Confidence            3445555 6677777654  56777777       444444332                    1236788899999999


Q ss_pred             ecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeeecCC
Q 018079           83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLC  161 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~  161 (361)
                      .|....                            .  ....+..+++|++|++++|....+|. .+..+++|+.|+++++
T Consensus        97 ~n~i~~----------------------------i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  146 (440)
T 3zyj_A           97 RNHIRT----------------------------I--EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN  146 (440)
T ss_dssp             SSCCCE----------------------------E--CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC
T ss_pred             CCcCCc----------------------------c--ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC
Confidence            886432                            1  13567788999999999998777665 5678999999999986


Q ss_pred             CCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079          162 FNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT  238 (361)
Q Consensus       162 ~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~  238 (361)
                       .+..++.  +..++ |+.|+++++..+..++...                   +..+++|++|+++++ .+..++    
T Consensus       147 -~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~-------------------~~~l~~L~~L~L~~n-~l~~~~----  201 (440)
T 3zyj_A          147 -PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA-------------------FEGLSNLRYLNLAMC-NLREIP----  201 (440)
T ss_dssp             -CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT-------------------TTTCSSCCEEECTTS-CCSSCC----
T ss_pred             -cccccCHHHhhhCcccCEeCCCCCCCcceeCcch-------------------hhcccccCeecCCCC-cCcccc----
Confidence             5666655  77889 9999999888888777643                   447899999999985 455443    


Q ss_pred             cccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-
Q 018079          239 RKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-  316 (361)
Q Consensus       239 ~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-  316 (361)
                         .+..+++|+.|+++++ .++.+ +..+..+++|+.|+++++ .++.++.   -.+.++++|+.|+++++ .++.++ 
T Consensus       202 ---~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~  272 (440)
T 3zyj_A          202 ---NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIER---NAFDNLQSLVEINLAHN-NLTLLPH  272 (440)
T ss_dssp             ---CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECT---TSSTTCTTCCEEECTTS-CCCCCCT
T ss_pred             ---ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEECh---hhhcCCCCCCEEECCCC-CCCccCh
Confidence               3557899999999986 56665 556778999999999985 4444331   24667899999999985 677777 


Q ss_pred             cccCCCCCCCeEEEeCCc
Q 018079          317 DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       317 ~~l~~l~~L~~L~l~~c~  334 (361)
                      ..+..+++|+.|+++++|
T Consensus       273 ~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTTSSCTTCCEEECCSSC
T ss_pred             hHhccccCCCEEEcCCCC
Confidence            567889999999999887

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.75  E-value=1.2e-17  Score=159.24  Aligned_cols=247  Identities=16%  Similarity=0.187  Sum_probs=145.1

Q ss_pred             hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHh--cCCCCCccEEEecccCCCCC-ch
Q 018079           69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEA--LQPPLNVEELWIIFYGGNIF-PK  145 (361)
Q Consensus        69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~-p~  145 (361)
                      .+.++++|++|++++|.........+...++++.|++..+.-      ....+..  +..+++|++|+++++..... |.
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA  147 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC------CccccCcccccCcccCCEEECCCCccCccCcc
Confidence            377889999999999887665566677788888888887641      1223333  77888899999998877664 44


Q ss_pred             h-hhcCccCCeeeecCCCCCCCCCC--CCCC--c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCc
Q 018079          146 W-LTSLANLRELNLSLCFNCEHLPQ--LGKL--P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKL  219 (361)
Q Consensus       146 ~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l--~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L  219 (361)
                      . +..+++|+.|+++++. +..++.  +..+  + ++.++++++. +..++........           ...+..+++|
T Consensus       148 ~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~-----------~~~~~~~~~L  214 (455)
T 3v47_A          148 SFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEK-----------CGNPFKNTSI  214 (455)
T ss_dssp             GGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHH-----------HCCTTTTCEE
T ss_pred             cccCCCCcccEEeCCCCc-ccccChhhhhccccccccccccccCc-ccccchhhccccc-----------ccccccccee
Confidence            4 6788899999998873 443322  4444  4 8888888644 4443332211000           0001234567


Q ss_pred             cEEEEcCCccchhhhhhhcc-------------------------------ccccc--cCCCccEEEEecCCCCCccchh
Q 018079          220 KSLEIDGMKELEEWNYRITR-------------------------------KENIS--IMPRLSSLEVSSCNKLKALPDY  266 (361)
Q Consensus       220 ~~L~L~~~~~l~~~~~~~~~-------------------------------~~~~~--~l~~L~~L~l~~c~~l~~l~~~  266 (361)
                      ++|+++++.-....+..+..                               ...+.  ..++|+.|+++++......|..
T Consensus       215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  294 (455)
T 3v47_A          215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV  294 (455)
T ss_dssp             EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred             eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence            77777664321111110000                               00000  1245566666554322223444


Q ss_pred             ccCCCCcceEeeccCC-------CcccCCcccccccC-------------CCCCccEEEEecCCCCCcc-ccccCCCCCC
Q 018079          267 LLQMTVLQNLRIFFCE-------NMEELPILEDHRTT-------------DIPRLSSLRIGYCPKLKVL-PDCLLRTTTL  325 (361)
Q Consensus       267 ~~~l~~L~~L~l~~c~-------~l~~lp~L~~L~l~-------------~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L  325 (361)
                      +..+++|++|+++++.       .+..+++|+.|+++             ++++|++|++++| .++.+ |..+..+++|
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNL  373 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccc
Confidence            5556666666665542       12233444444443             3788999999886 44554 6778889999


Q ss_pred             CeEEEeCCcc
Q 018079          326 QKLTIWGCPL  335 (361)
Q Consensus       326 ~~L~l~~c~~  335 (361)
                      ++|++++|.-
T Consensus       374 ~~L~L~~N~l  383 (455)
T 3v47_A          374 KELALDTNQL  383 (455)
T ss_dssp             CEEECCSSCC
T ss_pred             cEEECCCCcc
Confidence            9999988753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.75  E-value=5.3e-18  Score=166.35  Aligned_cols=115  Identities=22%  Similarity=0.213  Sum_probs=62.7

Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc-cchh-ccCCCCcceEeeccCCCcc----cC-
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-LPDY-LLQMTVLQNLRIFFCENME----EL-  287 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~-~~~l~~L~~L~l~~c~~l~----~l-  287 (361)
                      .+++|++|+++++ .+..++. +  ...+..+++|+.|+++++ .++. +|.. +..+++|+.|+++++.--.    .+ 
T Consensus       375 ~l~~L~~L~L~~N-~l~~~~~-~--~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~  449 (562)
T 3a79_B          375 TLKRLQTLILQRN-GLKNFFK-V--ALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP  449 (562)
T ss_dssp             SCSSCCEEECCSS-CCCBTTH-H--HHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC
T ss_pred             ccCCCCEEECCCC-CcCCccc-c--hhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc
Confidence            5555666666553 2332211 0  012334555555555553 2332 4432 2334555555555432111    11 


Q ss_pred             Cccccccc------------CCCCCccEEEEecCCCCCccccc-cCCCCCCCeEEEeCCcc
Q 018079          288 PILEDHRT------------TDIPRLSSLRIGYCPKLKVLPDC-LLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       288 p~L~~L~l------------~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~  335 (361)
                      ++|+.|++            .++++|+.|+++++ .++.+|.. +..+++|+.++++++|-
T Consensus       450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred             CcCCEEECCCCcCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCc
Confidence            23333333            34788999999884 67788866 88899999999998864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.75  E-value=2.7e-17  Score=150.56  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=36.9

Q ss_pred             ccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCc--cccccc-CCCCCccEEEEecCCCC--Cccccc
Q 018079          244 SIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPI--LEDHRT-TDIPRLSSLRIGYCPKL--KVLPDC  318 (361)
Q Consensus       244 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--L~~L~l-~~l~~L~~L~l~~c~~l--~~l~~~  318 (361)
                      ..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.++.  +..... ...++|+.|++.+++..  ...|..
T Consensus       238 ~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~  315 (332)
T 2ft3_A          238 SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPAT  315 (332)
T ss_dssp             GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGG
T ss_pred             hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCccc
Confidence            34555555555553 34455555555555555555542 3333331  000000 01334555555554332  122244


Q ss_pred             cCCCCCCCeEEEeCC
Q 018079          319 LLRTTTLQKLTIWGC  333 (361)
Q Consensus       319 l~~l~~L~~L~l~~c  333 (361)
                      +..+++|+.++++++
T Consensus       316 ~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          316 FRCVTDRLAIQFGNY  330 (332)
T ss_dssp             GTTBCCSTTEEC---
T ss_pred             ccccchhhhhhcccc
Confidence            455555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=6.7e-17  Score=147.76  Aligned_cols=172  Identities=12%  Similarity=0.173  Sum_probs=80.7

Q ss_pred             CCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCC--CCCC-CCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCE--HLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED  202 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~--~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~  202 (361)
                      ++|++|+++++....++. .+..+++|+.|+++++.-..  ..+. +..++ |+.|+++++. ++.++..          
T Consensus       121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~----------  189 (330)
T 1xku_A          121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG----------  189 (330)
T ss_dssp             TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS----------
T ss_pred             ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc----------
Confidence            455666665555444332 34455566666665542211  1111 44455 6666655432 3333221          


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccC
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFC  281 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c  281 (361)
                                  .+++|++|+++++ .+.....     ..+..+++|+.|+++++ .++.++. .+..+++|++|+++++
T Consensus       190 ------------~~~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N  250 (330)
T 1xku_A          190 ------------LPPSLTELHLDGN-KITKVDA-----ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN  250 (330)
T ss_dssp             ------------CCTTCSEEECTTS-CCCEECT-----GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS
T ss_pred             ------------ccccCCEEECCCC-cCCccCH-----HHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCC
Confidence                        2255566666553 2332211     23345556666666553 3443332 3445556666666654


Q ss_pred             CCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccC------CCCCCCeEEEeCCcc
Q 018079          282 ENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLL------RTTTLQKLTIWGCPL  335 (361)
Q Consensus       282 ~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~------~l~~L~~L~l~~c~~  335 (361)
                       .+..+|.    .+..+++|+.|++++| .++.++ ..+.      ..++++.+++.++|.
T Consensus       251 -~l~~lp~----~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          251 -KLVKVPG----GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             -CCSSCCT----TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             -cCccCCh----hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcc
Confidence             3444443    3444556666666553 344444 2221      124555666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.75  E-value=9e-17  Score=146.91  Aligned_cols=285  Identities=14%  Similarity=0.069  Sum_probs=189.4

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      +++++++++ .+..+|..+.  .++++|++.++.... ....+..++ |+ .+.+.+.. +.   ...+..+.++++|++
T Consensus        33 l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~-~L~L~~n~-l~---~~~~~~~~~l~~L~~  104 (330)
T 1xku_A           33 LRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLH-TLILINNK-IS---KISPGAFAPLVKLER  104 (330)
T ss_dssp             TTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCC-EEECCSSC-CC---CBCTTTTTTCTTCCE
T ss_pred             CeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCC-EEECCCCc-CC---eeCHHHhcCCCCCCE
Confidence            466777777 7777776654  567777775444331 111233333 33 44443211 11   111234778899999


Q ss_pred             EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCC---CchhhhcCccCC
Q 018079           79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNI---FPKWLTSLANLR  154 (361)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~---~p~~~~~l~~L~  154 (361)
                      |+++.|.....+..   ..++++.+++..+.       ...+ ...+..+++|++|+++++....   .+..+..+++|+
T Consensus       105 L~Ls~n~l~~l~~~---~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A          105 LYLSKNQLKELPEK---MPKTLQELRVHENE-------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             EECCSSCCSBCCSS---CCTTCCEEECCSSC-------CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             EECCCCcCCccChh---hcccccEEECCCCc-------ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            99988876543322   22677888887654       2222 3456788999999999987642   466678899999


Q ss_pred             eeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079          155 ELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       155 ~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      .|+++++ .+..+|.. ..+ |+.|+++++. ++.++...                   +..+++|++|+++++ .+...
T Consensus       175 ~L~l~~n-~l~~l~~~-~~~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~Ls~n-~l~~~  231 (330)
T 1xku_A          175 YIRIADT-NITTIPQG-LPPSLTELHLDGNK-ITKVDAAS-------------------LKGLNNLAKLGLSFN-SISAV  231 (330)
T ss_dssp             EEECCSS-CCCSCCSS-CCTTCSEEECTTSC-CCEECTGG-------------------GTTCTTCCEEECCSS-CCCEE
T ss_pred             EEECCCC-ccccCCcc-ccccCCEEECCCCc-CCccCHHH-------------------hcCCCCCCEEECCCC-cCcee
Confidence            9999996 56666652 227 9999999854 56654332                   447899999999985 34443


Q ss_pred             hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcc--ccc-ccCCCCCccEEEEecCC
Q 018079          234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPIL--EDH-RTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L--~~L-~l~~l~~L~~L~l~~c~  310 (361)
                      +.     ..+..+++|+.|+++++ .++.+|..+..+++|++|+++++ .++.++.-  ... .....++|+.+++.+++
T Consensus       232 ~~-----~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~  304 (330)
T 1xku_A          232 DN-----GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP  304 (330)
T ss_dssp             CT-----TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             Ch-----hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence            32     24567999999999996 68899999999999999999985 56665521  100 11125789999999876


Q ss_pred             CCC--ccccccCCCCCCCeEEEeCC
Q 018079          311 KLK--VLPDCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       311 ~l~--~l~~~l~~l~~L~~L~l~~c  333 (361)
                      ...  ..|..+..+++++.++++++
T Consensus       305 ~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          305 VQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ccccccCccccccccceeEEEeccc
Confidence            432  23478889999999999876

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.74  E-value=8.9e-18  Score=164.09  Aligned_cols=128  Identities=13%  Similarity=-0.042  Sum_probs=61.8

Q ss_pred             CceeecCCCCcccccC-ccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      |++|++++| .+..++ ..++++++|++|++.++.... ....+..++ |+ .+.+.+-.    .....+..++++++|+
T Consensus        28 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~-~L~Ls~n~----l~~~~~~~~~~l~~L~  101 (549)
T 2z81_A           28 MKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLE-HLDLSDNH----LSSLSSSWFGPLSSLK  101 (549)
T ss_dssp             CCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECTTSC----CCSCCHHHHTTCTTCC
T ss_pred             ccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCC-EEECCCCc----cCccCHHHhccCCCCc
Confidence            567888887 666664 457888888888885443321 111222222 22 33333211    1111122355666666


Q ss_pred             eEEEEecCCCCC-CcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCC
Q 018079           78 RLHLQFGGKDED-WRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGG  140 (361)
Q Consensus        78 ~L~l~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~  140 (361)
                      +|+++.|..... ....+...++++.|++..+....      .+ ...+..+++|++|+++++..
T Consensus       102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A          102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS------EIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEEEEEEEETTC
T ss_pred             EEECCCCcccccchhhhhhccCCccEEECCCCcccc------ccCHhhhhcccccCeeeccCCcc
Confidence            666666554331 12234455555556555442110      11 12344455555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.74  E-value=1.7e-17  Score=150.08  Aligned_cols=245  Identities=18%  Similarity=0.193  Sum_probs=177.4

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL   81 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l   81 (361)
                      +.++++++ .+..+|.++.  .+|++|++       ..+.+..++                    ...+.++++|+.|++
T Consensus        10 ~~l~c~~~-~l~~ip~~~~--~~l~~L~L-------~~n~l~~i~--------------------~~~~~~l~~L~~L~L   59 (306)
T 2z66_A           10 TEIRCNSK-GLTSVPTGIP--SSATRLEL-------ESNKLQSLP--------------------HGVFDKLTQLTKLSL   59 (306)
T ss_dssp             TEEECCSS-CCSSCCSCCC--TTCCEEEC-------CSSCCCCCC--------------------TTTTTTCTTCSEEEC
T ss_pred             CEEEcCCC-CcccCCCCCC--CCCCEEEC-------CCCccCccC--------------------HhHhhccccCCEEEC
Confidence            35677777 7889998664  68899988       455554432                    012578889999999


Q ss_pred             EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCC
Q 018079           82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLC  161 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~  161 (361)
                      +.|....                            ..........+++|++|+++++....+|..+..+++|+.|+++++
T Consensus        60 ~~n~l~~----------------------------~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           60 SSNGLSF----------------------------KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             CSSCCCE----------------------------EEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred             CCCccCc----------------------------ccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence            9886532                            111112233578999999999987778887889999999999997


Q ss_pred             CCCCCCC---CCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079          162 FNCEHLP---QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI  237 (361)
Q Consensus       162 ~~~~~l~---~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~  237 (361)
                       .+..++   .+..++ |+.|+++++. +.......                   +..+++|++|+++++. +.....  
T Consensus       112 -~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n~-l~~~~~--  167 (306)
T 2z66_A          112 -NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGI-------------------FNGLSSLEVLKMAGNS-FQENFL--  167 (306)
T ss_dssp             -EEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTT-------------------TTTCTTCCEEECTTCE-EGGGEE--
T ss_pred             -cccccccchhhhhccCCCEEECCCCc-CCccchhh-------------------cccCcCCCEEECCCCc-cccccc--
Confidence             444443   377888 9999999764 44443322                   4478999999999863 433111  


Q ss_pred             ccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc
Q 018079          238 TRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP  316 (361)
Q Consensus       238 ~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~  316 (361)
                        ...+..+++|+.|+++++ .++.+ |..+..+++|++|+++++ .+..++.   ..+.++++|+.|++++|......+
T Consensus       168 --~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~  240 (306)
T 2z66_A          168 --PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT---FPYKCLNSLQVLDYSLNHIMTSKK  240 (306)
T ss_dssp             --CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCS---GGGTTCTTCCEEECTTSCCCBCSS
T ss_pred             --hhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccCh---hhccCcccCCEeECCCCCCcccCH
Confidence              235668999999999986 56665 567788999999999985 4544442   246678999999999975555566


Q ss_pred             cccCCCC-CCCeEEEeCCcc
Q 018079          317 DCLLRTT-TLQKLTIWGCPL  335 (361)
Q Consensus       317 ~~l~~l~-~L~~L~l~~c~~  335 (361)
                      ..+..++ +|+.|++++++-
T Consensus       241 ~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          241 QELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             SSCCCCCTTCCEEECTTCCE
T ss_pred             HHHHhhhccCCEEEccCCCe
Confidence            7788885 999999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.74  E-value=7e-18  Score=165.46  Aligned_cols=222  Identities=17%  Similarity=0.133  Sum_probs=108.4

Q ss_pred             hhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-
Q 018079           96 EEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-  174 (361)
Q Consensus        96 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-  174 (361)
                      ..++++.+++..+.       ...++..+..+ +|++|++.+|....+|.  ..+++|+.|++.++......+. ..++ 
T Consensus       280 ~l~~L~~L~l~~~~-------l~~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~  348 (570)
T 2z63_A          280 CLTNVSSFSLVSVT-------IERVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPS  348 (570)
T ss_dssp             GGTTCSEEEEESCE-------ECSCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTT
T ss_pred             CcCcccEEEecCcc-------chhhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc-ccCCC
Confidence            34555555555443       22344445555 77888887777666665  3556666666666532222222 4445 


Q ss_pred             cceEeccccccceee---cccccccCCCCCCCCCCCC---CCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCC
Q 018079          175 LEKLQLKNLKSVKRV---GNEFLGIEESSEDGPSSSS---SSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR  248 (361)
Q Consensus       175 L~~L~l~~~~~l~~l---~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~  248 (361)
                      |+.|+++++. +...   +..+.....+..+.++...   ..+.+..+++|++|++.++. +.....    ...+..+++
T Consensus       349 L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~----~~~~~~l~~  422 (570)
T 2z63_A          349 LEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSE----FSVFLSLRN  422 (570)
T ss_dssp             CCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTT----SCTTTTCTT
T ss_pred             CCEEeCcCCc-cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCc-cccccc----hhhhhcCCC
Confidence            5555555432 2221   1111111111111111110   00013345555555555432 221111    112334444


Q ss_pred             ccEEEEecCCCCCccchhccCCCCcceEeeccCC--------CcccCCcccccc-------------cCCCCCccEEEEe
Q 018079          249 LSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE--------NMEELPILEDHR-------------TTDIPRLSSLRIG  307 (361)
Q Consensus       249 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~--------~l~~lp~L~~L~-------------l~~l~~L~~L~l~  307 (361)
                      |+.|++++|......|..+..+++|++|++++|.        .+..+++|+.|+             +.++++|+.|+++
T Consensus       423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  502 (570)
T 2z63_A          423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA  502 (570)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence            5555544442222233333444444444444432        112233344443             3447899999999


Q ss_pred             cCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079          308 YCPKLKVLP-DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       308 ~c~~l~~l~-~~l~~l~~L~~L~l~~c~~  335 (361)
                      +| .++.++ ..+..+++|+.|++++|+-
T Consensus       503 ~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  530 (570)
T 2z63_A          503 SN-QLKSVPDGIFDRLTSLQKIWLHTNPW  530 (570)
T ss_dssp             SS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CC-cCCCCCHHHhhcccCCcEEEecCCcc
Confidence            96 566665 6789999999999999874

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.74  E-value=8.1e-18  Score=155.38  Aligned_cols=180  Identities=14%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             cCCCCCccEEEecccCCCCCch--hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCC
Q 018079          124 LQPPLNVEELWIIFYGGNIFPK--WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE  198 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~  198 (361)
                      +..+++|++|+++++....+|.  .+..+++|+.|++++|..+..++.  +..++ |+.|+++++. +.......     
T Consensus       120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----  193 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS-----  193 (353)
T ss_dssp             HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT-----
T ss_pred             hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH-----
Confidence            3445555555555555444443  344555555555555433333322  44455 5555555432 23322111     


Q ss_pred             CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh----ccCCCCcc
Q 018079          199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY----LLQMTVLQ  274 (361)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~l~~L~  274 (361)
                                    +..+++|++|+++++. +..++.     ..+..+++|+.|+++++ .++.++..    ......++
T Consensus       194 --------------l~~l~~L~~L~l~~n~-l~~~~~-----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~  252 (353)
T 2z80_A          194 --------------LKSIQNVSHLILHMKQ-HILLLE-----IFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIK  252 (353)
T ss_dssp             --------------TTTCSEEEEEEEECSC-STTHHH-----HHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCC
T ss_pred             --------------HhccccCCeecCCCCc-cccchh-----hhhhhcccccEEECCCC-ccccccccccccccccchhh
Confidence                          2245555555555532 333322     11223555555555553 23322211    11133444


Q ss_pred             eEeeccCCC----cccCCcccccccCCCCCccEEEEecCCCCCccccc-cCCCCCCCeEEEeCCcc
Q 018079          275 NLRIFFCEN----MEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC-LLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       275 ~L~l~~c~~----l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~-l~~l~~L~~L~l~~c~~  335 (361)
                      .++++++.-    +..+|.    .+.++++|+.|++++| .++.+|.. +..+++|++|++++|+-
T Consensus       253 ~l~L~~~~l~~~~l~~l~~----~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          253 KFTFRNVKITDESLFQVMK----LLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             EEEEESCBCCHHHHHHHHH----HHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             ccccccccccCcchhhhHH----HHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCc
Confidence            444444210    011221    2455889999999985 77889966 48999999999999864

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.73  E-value=1.8e-16  Score=158.91  Aligned_cols=268  Identities=13%  Similarity=-0.000  Sum_probs=130.9

Q ss_pred             CceeecCCCCcccccC-ccCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChH-HHH----HhhcCC
Q 018079            1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVD-EAE----RLQLSN   72 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~-~~~----~~~l~~   72 (361)
                      |++|++++| .+..++ ..++.+++|++|++.++.... ....+..+. ++ .+.+.+........ ...    ...+.+
T Consensus       250 L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~~~~~~~~~~~~lp~i~~~~~~~  327 (680)
T 1ziw_A          250 LTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVR-YLNLKRSFTKQSISLASLPKIDDFSFQW  327 (680)
T ss_dssp             CCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCC-EEECTTCBCCC------CCEECTTTTTT
T ss_pred             CCEEECCCC-CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCcc-EEeccchhhhcccccccccccChhhccc
Confidence            456666666 555544 446777777777774433221 011122222 22 33332100000000 000    013567


Q ss_pred             CCCCceEEEEecCCCCCCcchhhhhhcccccccccccc-cccchhhHHHHHhcCCCCCccEEEecccCCCC-CchhhhcC
Q 018079           73 KKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEG-RRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSL  150 (361)
Q Consensus        73 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l  150 (361)
                      +++|++|+++.|.........+...++++.+++..+.. ....  .......+ ..++|++|++++|.... .|.++..+
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l--~~~~f~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l  404 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL--TNETFVSL-AHSPLHILNLTKNKISKIESDAFSWL  404 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE--CTTTTGGG-TTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc--chhhhccc-ccCcCceEECCCCCCCeEChhhhhCC
Confidence            77888888877766555555566667777777665320 0000  00000000 12456666666665544 34455566


Q ss_pred             ccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeeccccc-ccCCCCCCCCCCC------CCCCcccCCCCcc
Q 018079          151 ANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFL-GIEESSEDGPSSS------SSSPSVIAFPKLK  220 (361)
Q Consensus       151 ~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~-~~~~~~~~~~~~~------~~~~~l~~~~~L~  220 (361)
                      ++|+.|+++++.-...++.  +..++ |+.|+++++. +..++...+ ....+..+.+...      .....+..+++|+
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            7777777776533233442  55666 7777776644 333332211 1111111111100      1112255677777


Q ss_pred             EEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch---------hccCCCCcceEeeccC
Q 018079          221 SLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD---------YLLQMTVLQNLRIFFC  281 (361)
Q Consensus       221 ~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~---------~~~~l~~L~~L~l~~c  281 (361)
                      .|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.         .+..+++|+.|+++++
T Consensus       484 ~L~Ls~N-~l~~i~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N  546 (680)
T 1ziw_A          484 ILDLSNN-NIANIND-----DMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN  546 (680)
T ss_dssp             EEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS
T ss_pred             EEECCCC-CCCcCCh-----hhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC
Confidence            7777764 3443332     33556777888888774 4544321         2455777788877764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.72  E-value=5.3e-17  Score=162.72  Aligned_cols=313  Identities=15%  Similarity=0.130  Sum_probs=168.0

Q ss_pred             CceeecCCCCcccccCc-cCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      +++|+++++ .+..+|. .++++++|++|++.++.... ....+..++ |+ .+.+.+.. +.   ......++++++|+
T Consensus        27 l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~-l~---~l~~~~~~~l~~L~  100 (680)
T 1ziw_A           27 ITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK-VLNLQHNE-LS---QLSDKTFAFCTNLT  100 (680)
T ss_dssp             CSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC-EEECCSSC-CC---CCCTTTTTTCTTCS
T ss_pred             CcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC-EEECCCCc-cC---ccChhhhccCCCCC
Confidence            467777777 6777665 37777777777774433221 011122222 33 33333211 11   11112366777777


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhh--cCccCC
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLT--SLANLR  154 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~--~l~~L~  154 (361)
                      +|+++.|.........+...++++.|++..+.-      ....+..+..+++|++|+++++....++. .+.  .+++|+
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~  174 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL------SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK  174 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC------SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEES
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcc------cccCchhhcccccCCEEEccCCcccccCHHHhhcccccccc
Confidence            777777766555555566667777777766531      11112345566777777777766555433 222  346677


Q ss_pred             eeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccc---cccCCCCCCCCCCC----CCCCcccCC--CCccEE
Q 018079          155 ELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEF---LGIEESSEDGPSSS----SSSPSVIAF--PKLKSL  222 (361)
Q Consensus       155 ~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~---~~~~~~~~~~~~~~----~~~~~l~~~--~~L~~L  222 (361)
                      .|+++++ .+..+++  +..++ |+.+.+.++.-........   .....+..+.++..    .....+..+  ++|++|
T Consensus       175 ~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L  253 (680)
T 1ziw_A          175 KLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML  253 (680)
T ss_dssp             EEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred             EEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence            7777765 3333322  34444 4444444321000000000   00000000111100    000113333  348889


Q ss_pred             EEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc-cchhccCCCCcceEeeccCCC-----cccCCcccccccC
Q 018079          223 EIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-LPDYLLQMTVLQNLRIFFCEN-----MEELPILEDHRTT  296 (361)
Q Consensus       223 ~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~c~~-----l~~lp~L~~L~l~  296 (361)
                      +++++. +...+.     ..+..+++|+.|+++++ .+.. .|..+..+++|+.|+++++..     +..+|.+....++
T Consensus       254 ~Ls~n~-l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~  326 (680)
T 1ziw_A          254 DLSYNN-LNVVGN-----DSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ  326 (680)
T ss_dssp             ECTTSC-CCEECT-----TTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred             ECCCCC-cCccCc-----ccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence            888753 433322     34567889999999886 4444 455677789999999886422     1256666666777


Q ss_pred             CCCCccEEEEecCCCCCcc-ccccCCCCCCCeEEEeCCc
Q 018079          297 DIPRLSSLRIGYCPKLKVL-PDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       297 ~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~  334 (361)
                      .+++|+.|++++| .+..+ +..+..+++|++|++++|.
T Consensus       327 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          327 WLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             TCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             cCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCc
Confidence            7888888888875 44444 4567788888888887764

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.72  E-value=1.1e-16  Score=156.91  Aligned_cols=114  Identities=15%  Similarity=0.149  Sum_probs=85.6

Q ss_pred             cCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc---chhccCCCCcceEeeccCCC-------
Q 018079          214 IAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL---PDYLLQMTVLQNLRIFFCEN-------  283 (361)
Q Consensus       214 ~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~l~~c~~-------  283 (361)
                      ..+++|++|+++++. +....     ...+..+++|+.|+++++ .++.+   |..+..+++|++|+++++.-       
T Consensus       350 ~~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  422 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV-FTDSV-----FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR  422 (562)
T ss_dssp             SSCCCCCEEECCSSC-CCTTT-----TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred             cCCCCceEEECCCCc-cccch-----hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence            567888888888753 33321     134568899999999885 56654   45577899999999998642       


Q ss_pred             -cccCCcccccccCC----------C-CCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          284 -MEELPILEDHRTTD----------I-PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       284 -l~~lp~L~~L~l~~----------l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                       +..+++|++|++++          + ++|+.|++++| .++.+|.++..+++|+.|++++|.-
T Consensus       423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l  485 (562)
T 3a79_B          423 TCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQL  485 (562)
T ss_dssp             CCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCC
T ss_pred             hhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCC
Confidence             22345778887766          3 68999999986 7889998788999999999999853

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=3.6e-17  Score=153.06  Aligned_cols=257  Identities=15%  Similarity=0.065  Sum_probs=172.4

Q ss_pred             CceeecCCCCcccccCc-cCCCccccceecceeeecCCC-CCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGVD-GSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~-~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      |++|++++| .+..+|. .++.+++|++|++.++..... ...+..++ |+ .+.+.+.. +.   ......+.++++|+
T Consensus        71 L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~-l~---~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           71 VELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT-VLVLERND-LS---SLPRGIFHNTPKLT  144 (390)
T ss_dssp             CSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSC-CC---CCCTTTTTTCTTCC
T ss_pred             CcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC-EEECCCCc-cC---cCCHHHhcCCCCCc
Confidence            688999998 7888775 689999999999965544321 11233333 33 44443311 11   11112357788889


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCc-------------------cEEEeccc
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNV-------------------EELWIIFY  138 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L-------------------~~L~l~~~  138 (361)
                      +|+++.|.........+...++++.|++..+.-..       +  .+..+++|                   ++|+++++
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~--~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n  215 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------V--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN  215 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------C--CGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSS
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------c--ccccccccceeecccccccccCCCCcceEEECCCC
Confidence            99888887766656667777888888887754211       1  12333444                   44555544


Q ss_pred             CCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCC
Q 018079          139 GGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP  217 (361)
Q Consensus       139 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  217 (361)
                      ....+|..  .+++|+.|+++++ .+...+.+..++ |+.|+++++. +..+....                   +..++
T Consensus       216 ~l~~~~~~--~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~-------------------~~~l~  272 (390)
T 3o6n_A          216 SINVVRGP--VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-------------------FVKMQ  272 (390)
T ss_dssp             CCCEEECC--CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGG-------------------GTTCS
T ss_pred             eeeecccc--ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChhH-------------------ccccc
Confidence            44333322  3467888888886 555556677888 9999998754 55543322                   44789


Q ss_pred             CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCC
Q 018079          218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTD  297 (361)
Q Consensus       218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~  297 (361)
                      +|+.|+++++ .+..++.      ....+++|+.|+++++ .++.+|..+..+++|+.|+++++. +..+      .+..
T Consensus       273 ~L~~L~L~~n-~l~~~~~------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~------~~~~  337 (390)
T 3o6n_A          273 RLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL------KLST  337 (390)
T ss_dssp             SCCEEECCSS-CCCEEEC------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC------CCCT
T ss_pred             cCCEEECCCC-cCcccCc------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-ccee------Cchh
Confidence            9999999985 5555543      3457899999999996 688898888889999999999963 4444      4667


Q ss_pred             CCCccEEEEecCC
Q 018079          298 IPRLSSLRIGYCP  310 (361)
Q Consensus       298 l~~L~~L~l~~c~  310 (361)
                      +++|+.|++++++
T Consensus       338 ~~~L~~L~l~~N~  350 (390)
T 3o6n_A          338 HHTLKNLTLSHND  350 (390)
T ss_dssp             TCCCSEEECCSSC
T ss_pred             hccCCEEEcCCCC
Confidence            8999999999864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.70  E-value=3.7e-16  Score=154.07  Aligned_cols=250  Identities=19%  Similarity=0.104  Sum_probs=157.6

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKN   75 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~   75 (361)
                      +++|+++++ .+..+|..+.  ++|++|++.++       .+..++     |+ .+.+.+.. +..+.       ..+++
T Consensus        42 l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-------~l~~lp~~l~~L~-~L~Ls~N~-l~~lp-------~~l~~  102 (622)
T 3g06_A           42 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-------NLTSLPALPPELR-TLEVSGNQ-LTSLP-------VLPPG  102 (622)
T ss_dssp             CCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-------CCSCCCCCCTTCC-EEEECSCC-CSCCC-------CCCTT
T ss_pred             CcEEEecCC-CcCccChhhC--CCCcEEEecCC-------CCCCCCCcCCCCC-EEEcCCCc-CCcCC-------CCCCC
Confidence            468999999 8999998876  79999999544       333333     33 44443311 11110       15678


Q ss_pred             CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCe
Q 018079           76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRE  155 (361)
Q Consensus        76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~  155 (361)
                      |++|+++.|.....+.    ...+++.|++..+.       ...++.   .+++|++|++++|....+|.   .+.+|+.
T Consensus       103 L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~-------l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~  165 (622)
T 3g06_A          103 LLELSIFSNPLTHLPA----LPSGLCKLWIFGNQ-------LTSLPV---LPPGLQELSVSDNQLASLPA---LPSELCK  165 (622)
T ss_dssp             CCEEEECSCCCCCCCC----CCTTCCEEECCSSC-------CSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCE
T ss_pred             CCEEECcCCcCCCCCC----CCCCcCEEECCCCC-------CCcCCC---CCCCCCEEECcCCcCCCcCC---ccCCCCE
Confidence            8888888776544221    33445555555443       111111   12556666666665544543   2345666


Q ss_pred             eeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhh
Q 018079          156 LNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN  234 (361)
Q Consensus       156 L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~  234 (361)
                      |++++| .+..+|  ..++ |+.|+++++. ++.++.                       .+++|+.|++.++ .+..++
T Consensus       166 L~L~~N-~l~~l~--~~~~~L~~L~Ls~N~-l~~l~~-----------------------~~~~L~~L~L~~N-~l~~l~  217 (622)
T 3g06_A          166 LWAYNN-QLTSLP--MLPSGLQELSVSDNQ-LASLPT-----------------------LPSELYKLWAYNN-RLTSLP  217 (622)
T ss_dssp             EECCSS-CCSCCC--CCCTTCCEEECCSSC-CSCCCC-----------------------CCTTCCEEECCSS-CCSSCC
T ss_pred             EECCCC-CCCCCc--ccCCCCcEEECCCCC-CCCCCC-----------------------ccchhhEEECcCC-cccccC
Confidence            666654 444444  3345 6666666532 343332                       3467888888764 444443


Q ss_pred             hhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCc
Q 018079          235 YRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKV  314 (361)
Q Consensus       235 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~  314 (361)
                      .         .+++|+.|+++++ .++.+|   ..+++|+.|+++++ .++.+|.       .+++|+.|++++| .++.
T Consensus       218 ~---------~~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~-------~~~~L~~L~Ls~N-~L~~  275 (622)
T 3g06_A          218 A---------LPSGLKELIVSGN-RLTSLP---VLPSELKELMVSGN-RLTSLPM-------LPSGLLSLSVYRN-QLTR  275 (622)
T ss_dssp             C---------CCTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSS-CCCS
T ss_pred             C---------CCCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCC-CCCcCCc-------ccccCcEEeCCCC-CCCc
Confidence            3         4578888888875 677777   34678888888885 6666664       4688999999985 7779


Q ss_pred             cccccCCCCCCCeEEEeCCccc
Q 018079          315 LPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       315 l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      +|..+.++++|+.|++++|+-.
T Consensus       276 lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          276 LPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             CCGGGGGSCTTCEEECCSCCCC
T ss_pred             CCHHHhhccccCEEEecCCCCC
Confidence            9988999999999999999743

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.70  E-value=2.2e-16  Score=162.05  Aligned_cols=32  Identities=19%  Similarity=0.027  Sum_probs=19.6

Q ss_pred             CceeecCCCCccccc-CccCCCccccceeccee
Q 018079            1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFV   32 (361)
Q Consensus         1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~   32 (361)
                      |++|++++|..+..+ |..++++++|++|++.+
T Consensus        50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~   82 (844)
T 3j0a_A           50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS   82 (844)
T ss_dssp             CSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred             CeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence            566777666444455 44567777777777643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.68  E-value=1.3e-16  Score=157.60  Aligned_cols=258  Identities=14%  Similarity=0.047  Sum_probs=173.7

Q ss_pred             CceeecCCCCcccccCc-cCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      |++|++++| .+..+|+ .++.+++|++|++.++.... ....+..++ |+ .+.+.+.. +.   ...+..++++++|+
T Consensus        77 L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~-l~---~l~~~~~~~l~~L~  150 (597)
T 3oja_B           77 VELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT-VLVLERND-LS---SLPRGIFHNTPKLT  150 (597)
T ss_dssp             CSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSC-CC---CCCTTTTTTCTTCC
T ss_pred             CcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC-EEEeeCCC-CC---CCCHHHhccCCCCC
Confidence            688999999 7888775 69999999999996655432 111223333 33 44443311 11   11122357888999


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEE-------------------eccc
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELW-------------------IIFY  138 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~-------------------l~~~  138 (361)
                      .|+++.|.........+...++++.|++..+.-       ..+  .+..+++|++|+                   ++++
T Consensus       151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-------~~~--~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-------THV--DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN  221 (597)
T ss_dssp             EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-------SBC--CGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSS
T ss_pred             EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-------CCc--ChhhhhhhhhhhcccCccccccCCchhheeeccCC
Confidence            999998887766666677788888888887641       111  123344455544                   4444


Q ss_pred             CCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCC
Q 018079          139 GGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP  217 (361)
Q Consensus       139 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  217 (361)
                      ....++..  ..++|+.|++++| .+...+.+..++ |+.|+++++. +..+++..                   +..++
T Consensus       222 ~l~~~~~~--~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~-------------------~~~l~  278 (597)
T 3oja_B          222 SINVVRGP--VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHP-------------------FVKMQ  278 (597)
T ss_dssp             CCCEEECS--CCSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGG-------------------GTTCS
T ss_pred             cccccccc--cCCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHH-------------------hcCcc
Confidence            43333322  2357888888886 455555577888 9999998754 55543322                   44789


Q ss_pred             CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCC
Q 018079          218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTD  297 (361)
Q Consensus       218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~  297 (361)
                      +|+.|+++++ .+..++.      ....+++|+.|++++| .+..+|..+..+++|+.|++++|. +..+      .+..
T Consensus       279 ~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~------~~~~  343 (597)
T 3oja_B          279 RLERLYISNN-RLVALNL------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL------KLST  343 (597)
T ss_dssp             SCCEEECTTS-CCCEEEC------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC------CCCT
T ss_pred             CCCEEECCCC-CCCCCCc------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCc------Chhh
Confidence            9999999985 5555543      3457999999999996 677899888889999999999963 4333      4667


Q ss_pred             CCCccEEEEecCCC
Q 018079          298 IPRLSSLRIGYCPK  311 (361)
Q Consensus       298 l~~L~~L~l~~c~~  311 (361)
                      +++|+.|++++++-
T Consensus       344 ~~~L~~L~l~~N~~  357 (597)
T 3oja_B          344 HHTLKNLTLSHNDW  357 (597)
T ss_dssp             TCCCSEEECCSSCE
T ss_pred             cCCCCEEEeeCCCC
Confidence            89999999998653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.68  E-value=9.5e-18  Score=152.64  Aligned_cols=176  Identities=13%  Similarity=0.034  Sum_probs=119.2

Q ss_pred             CCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079          126 PPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED  202 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~  202 (361)
                      ..++|++|+++++....++.  ..+++|+.|+++++ .+..++.  +..++ |+.|+++++. +..++...+        
T Consensus        97 ~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~--------  164 (317)
T 3o53_A           97 VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL--------  164 (317)
T ss_dssp             ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGG--------
T ss_pred             CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHH--------
Confidence            34778888888877655543  24677888888876 4554443  56677 8888888643 555443322        


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCC
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE  282 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  282 (361)
                                ...+++|++|+++++ .+..++.       ...+++|+.|+++++ .++.+|..+..+++|+.|+++++ 
T Consensus       165 ----------~~~l~~L~~L~L~~N-~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-  224 (317)
T 3o53_A          165 ----------AASSDTLEHLNLQYN-FIYDVKG-------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-  224 (317)
T ss_dssp             ----------GGGTTTCCEEECTTS-CCCEEEC-------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-
T ss_pred             ----------hhccCcCCEEECCCC-cCccccc-------ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-
Confidence                      125688888888875 3444332       224788888888874 67777777777888888888875 


Q ss_pred             CcccCCcccccccCCCCCccEEEEecCCCC-CccccccCCCCCCCeEEEeCCccch
Q 018079          283 NMEELPILEDHRTTDIPRLSSLRIGYCPKL-KVLPDCLLRTTTLQKLTIWGCPLLE  337 (361)
Q Consensus       283 ~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l-~~l~~~l~~l~~L~~L~l~~c~~l~  337 (361)
                      .++.+|.    .+..+++|+.|++++++.. ..++..+..+++|+.+++.+++.++
T Consensus       225 ~l~~l~~----~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          225 KLVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             CCCEECT----TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cccchhh----HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            5666664    4566788888888886554 3566777778888888877665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.68  E-value=5.5e-17  Score=147.25  Aligned_cols=204  Identities=18%  Similarity=0.218  Sum_probs=148.9

Q ss_pred             cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhc--CCCCCccEEEecccCCCCCchhh
Q 018079           70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEAL--QPPLNVEELWIIFYGGNIFPKWL  147 (361)
Q Consensus        70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~p~~~  147 (361)
                      ..++++|++|+++.|....                              ..+..+  ..+++|++|+++++.....|..+
T Consensus        91 ~~~l~~L~~L~L~~n~l~~------------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  140 (312)
T 1wwl_A           91 VLGISGLQELTLENLEVTG------------------------------TAPPPLLEATGPDLNILNLRNVSWATRDAWL  140 (312)
T ss_dssp             HHTTSCCCEEEEEEEBCBS------------------------------CCCCCSSSCCSCCCSEEEEESCBCSSSSSHH
T ss_pred             hcCcCCccEEEccCCcccc------------------------------hhHHHHHHhcCCCccEEEccCCCCcchhHHH
Confidence            3468899999999987531                              123333  77899999999999887778777


Q ss_pred             hcC-----ccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceee--cccccccCCCCCCCCCCCCCCCcccCCC
Q 018079          148 TSL-----ANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRV--GNEFLGIEESSEDGPSSSSSSPSVIAFP  217 (361)
Q Consensus       148 ~~l-----~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~  217 (361)
                      +.+     ++|++|+++++ .+..++.  ++.++ |+.|+++++.-....  +..+.                  +..++
T Consensus       141 ~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~------------------~~~l~  201 (312)
T 1wwl_A          141 AELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC------------------PLKFP  201 (312)
T ss_dssp             HHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC------------------TTSCT
T ss_pred             HHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH------------------hccCC
Confidence            766     89999999997 5665553  88899 999999986532221  21211                  24789


Q ss_pred             CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccc--hhccCCCCcceEeeccCCCcccCCccccccc
Q 018079          218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALP--DYLLQMTVLQNLRIFFCENMEELPILEDHRT  295 (361)
Q Consensus       218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l  295 (361)
                      +|++|+++++ .+..++.-.  ...+..+++|+.|+++++ .++..+  ..+..+++|+.|+++++ .++.+|.    .+
T Consensus       202 ~L~~L~L~~N-~l~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~----~~  272 (312)
T 1wwl_A          202 TLQVLALRNA-GMETPSGVC--SALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPK----GL  272 (312)
T ss_dssp             TCCEEECTTS-CCCCHHHHH--HHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCS----SC
T ss_pred             CCCEEECCCC-cCcchHHHH--HHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCC-ccChhhh----hc
Confidence            9999999986 454322100  123347899999999985 565543  34455899999999985 5667774    22


Q ss_pred             CCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          296 TDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       296 ~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      .  ++|+.|+++++ .++.+|. +..+++|++|++++++-
T Consensus       273 ~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          273 P--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             C--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             c--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCCC
Confidence            2  78999999984 7788887 88999999999998864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.67  E-value=6.6e-16  Score=142.53  Aligned_cols=244  Identities=16%  Similarity=0.168  Sum_probs=173.7

Q ss_pred             eecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEe
Q 018079            4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF   83 (361)
Q Consensus         4 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~   83 (361)
                      .+.+++ .++.+|.++.  .+|++|++       ..+.+..++                    ...+.++++|+.|+++.
T Consensus        36 c~~~~~-~l~~iP~~~~--~~L~~L~l-------~~n~i~~~~--------------------~~~~~~l~~L~~L~L~~   85 (353)
T 2z80_A           36 CKGSSG-SLNSIPSGLT--EAVKSLDL-------SNNRITYIS--------------------NSDLQRCVNLQALVLTS   85 (353)
T ss_dssp             EECCST-TCSSCCTTCC--TTCCEEEC-------TTSCCCEEC--------------------TTTTTTCTTCCEEECTT
T ss_pred             eeCCCC-Cccccccccc--ccCcEEEC-------CCCcCcccC--------------------HHHhccCCCCCEEECCC
Confidence            455666 7788887665  47888888       555555432                    01367788999999988


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCCC
Q 018079           84 GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCF  162 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~  162 (361)
                      |....                              ..+..+..+++|++|+++++....+|.. +..+++|+.|+++++ 
T Consensus        86 n~l~~------------------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-  134 (353)
T 2z80_A           86 NGINT------------------------------IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-  134 (353)
T ss_dssp             SCCCE------------------------------ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-
T ss_pred             CccCc------------------------------cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-
Confidence            76432                              1134577889999999999988887765 678999999999997 


Q ss_pred             CCCCCCC---CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079          163 NCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT  238 (361)
Q Consensus       163 ~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~  238 (361)
                      .+..++.   +..++ |+.|+++++..+..++...                   +..+++|++|+++++. +.....   
T Consensus       135 ~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------~~~l~~L~~L~l~~n~-l~~~~~---  191 (353)
T 2z80_A          135 PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-------------------FAGLTFLEELEIDASD-LQSYEP---  191 (353)
T ss_dssp             CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-------------------TTTCCEEEEEEEEETT-CCEECT---
T ss_pred             CCcccCchhhhccCCCCcEEECCCCccccccCHHH-------------------ccCCCCCCEEECCCCC-cCccCH---
Confidence            5666665   77889 9999999876667665433                   4478999999999853 443321   


Q ss_pred             cccccccCCCccEEEEecCCCCCccchhcc-CCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCC----C
Q 018079          239 RKENISIMPRLSSLEVSSCNKLKALPDYLL-QMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKL----K  313 (361)
Q Consensus       239 ~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l----~  313 (361)
                        ..+..+++|+.|+++++ .++.+|..+. .+++|+.|+++++ .++.++.-..-.....+.++.+++.++..-    .
T Consensus       192 --~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          192 --KSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             --TTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             --HHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhccccccccccCcchh
Confidence              35667899999999986 5777776554 4899999999985 344333100001223567888888875322    2


Q ss_pred             ccccccCCCCCCCeEEEeCCcc
Q 018079          314 VLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       314 ~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      .+|..+..+++|+.|++++|.-
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l  289 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQL  289 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCC
T ss_pred             hhHHHHhcccCCCEEECCCCCC
Confidence            3677888999999999999853

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.67  E-value=4.1e-16  Score=159.99  Aligned_cols=170  Identities=15%  Similarity=0.028  Sum_probs=89.3

Q ss_pred             CceeecCCCCccccc-CccCCCccccceecceeeecCC--CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCC
Q 018079            1 MRSLLNFGTNSLKYM-PIGISKLTSLRRLDKFVVGGGV--DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNL   76 (361)
Q Consensus         1 L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~--~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L   76 (361)
                      |++|++++| .+..+ |..++++++|++|++.++....  ....+..++ |+ .+.+.+..    .....+..++++++|
T Consensus        26 l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~-~L~Ls~N~----l~~~~p~~~~~l~~L   99 (844)
T 3j0a_A           26 TERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLR-ILDLGSSK----IYFLHPDAFQGLFHL   99 (844)
T ss_dssp             CCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCC-EEECTTCC----CCEECTTSSCSCSSC
T ss_pred             cCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCC-EEECCCCc----CcccCHhHccCCccc
Confidence            567888887 66665 4568888888888885442211  112233333 33 33333211    111123346777777


Q ss_pred             ceEEEEecCCCC--CCcchhhhhhcccccccccccccccchhhHHH--HHhcCCCCCccEEEecccCCCC-CchhhhcC-
Q 018079           77 LRLHLQFGGKDE--DWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL--LEALQPPLNVEELWIIFYGGNI-FPKWLTSL-  150 (361)
Q Consensus        77 ~~L~l~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l-  150 (361)
                      ++|+++.|....  +....+...++++.|++..+.       ....  ...+..+++|++|+++++.... .+..+..+ 
T Consensus       100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-------l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~  172 (844)
T 3j0a_A          100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-------IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ  172 (844)
T ss_dssp             CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-------CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred             CEeeCcCCCCCcccccCccccccCCCCEEECCCCc-------ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence            777777766543  222235556666666666543       1111  1345566667777776665433 34444444 


Q ss_pred             -ccCCeeeecCCCCCCCCCC-CCC----C--c-cceEecccc
Q 018079          151 -ANLRELNLSLCFNCEHLPQ-LGK----L--P-LEKLQLKNL  183 (361)
Q Consensus       151 -~~L~~L~l~~~~~~~~l~~-l~~----l--~-L~~L~l~~~  183 (361)
                       ++|+.|+++++.-....+. ++.    +  . |+.|+++++
T Consensus       173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             CCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence             5666777666533222222 111    1  2 677777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.67  E-value=1.5e-15  Score=144.81  Aligned_cols=254  Identities=19%  Similarity=0.168  Sum_probs=119.0

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNKKN   75 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l~~   75 (361)
                      |++|++++| .+..+| +++++++|++|++.++       .+..++     ++ .+.+.+.. +...    + .++++++
T Consensus       133 L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-------~l~~lp~~~~~L~-~L~L~~n~-l~~l----~-~~~~l~~  196 (454)
T 1jl5_A          133 LEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-------SLKKLPDLPPSLE-FIAAGNNQ-LEEL----P-ELQNLPF  196 (454)
T ss_dssp             CCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-------CCSCCCCCCTTCC-EEECCSSC-CSSC----C-CCTTCTT
T ss_pred             CCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-------cCcccCCCccccc-EEECcCCc-CCcC----c-cccCCCC
Confidence            466777777 666677 4777777777777433       222222     22 33332211 1111    1 2667777


Q ss_pred             CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCe
Q 018079           76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRE  155 (361)
Q Consensus        76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~  155 (361)
                      |+.|++++|.....+.    ....++.+++..+.       ...++ .+..+++|++|+++++....+|..   +++|+.
T Consensus       197 L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~-------l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~  261 (454)
T 1jl5_A          197 LTAIYADNNSLKKLPD----LPLSLESIVAGNNI-------LEELP-ELQNLPFLTTIYADNNLLKTLPDL---PPSLEA  261 (454)
T ss_dssp             CCEEECCSSCCSSCCC----CCTTCCEEECCSSC-------CSSCC-CCTTCTTCCEEECCSSCCSSCCSC---CTTCCE
T ss_pred             CCEEECCCCcCCcCCC----CcCcccEEECcCCc-------CCccc-ccCCCCCCCEEECCCCcCCccccc---ccccCE
Confidence            7777777766543211    12355556665543       22222 355566666666666655555542   356666


Q ss_pred             eeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhh
Q 018079          156 LNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN  234 (361)
Q Consensus       156 L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~  234 (361)
                      |++++| .+..+|..  .+ |+.|+++++. ++.++.                       ..++|+.|+++++ .+..++
T Consensus       262 L~l~~N-~l~~l~~~--~~~L~~L~ls~N~-l~~l~~-----------------------~~~~L~~L~l~~N-~l~~i~  313 (454)
T 1jl5_A          262 LNVRDN-YLTDLPEL--PQSLTFLDVSENI-FSGLSE-----------------------LPPNLYYLNASSN-EIRSLC  313 (454)
T ss_dssp             EECCSS-CCSCCCCC--CTTCCEEECCSSC-CSEESC-----------------------CCTTCCEEECCSS-CCSEEC
T ss_pred             EECCCC-cccccCcc--cCcCCEEECcCCc-cCcccC-----------------------cCCcCCEEECcCC-cCCccc
Confidence            666664 34444431  24 6666666533 333321                       1135555555543 222211


Q ss_pred             hhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC-
Q 018079          235 YRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK-  313 (361)
Q Consensus       235 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~-  313 (361)
                      .         ..++|+.|+++++ .++.+|..   +++|+.|+++++ .++.+|.       .+++|+.|+++++.... 
T Consensus       314 ~---------~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~l~~lp~-------~l~~L~~L~L~~N~l~~l  372 (454)
T 1jl5_A          314 D---------LPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVPE-------LPQNLKQLHVEYNPLREF  372 (454)
T ss_dssp             C---------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC-------CCTTCCEEECCSSCCSSC
T ss_pred             C---------CcCcCCEEECCCC-cccccccc---CCcCCEEECCCC-ccccccc-------hhhhccEEECCCCCCCcC
Confidence            1         1135556655553 34444433   355566666553 3444442       14556666665543322 


Q ss_pred             -ccccccCCC-------------CCCCeEEEeCCc
Q 018079          314 -VLPDCLLRT-------------TTLQKLTIWGCP  334 (361)
Q Consensus       314 -~l~~~l~~l-------------~~L~~L~l~~c~  334 (361)
                       .+|.++.++             ++|+.|++++++
T Consensus       373 ~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~  407 (454)
T 1jl5_A          373 PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP  407 (454)
T ss_dssp             CCCCTTCCEEECCC---------------------
T ss_pred             CCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence             344444444             556666666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.66  E-value=1.4e-15  Score=145.14  Aligned_cols=207  Identities=21%  Similarity=0.231  Sum_probs=110.6

Q ss_pred             cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhc
Q 018079           70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTS  149 (361)
Q Consensus        70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~  149 (361)
                      ++++++|++|+++.|.....+.    ...+++.+++..+.       ...++ .+..+++|++|++++|....+|..   
T Consensus       149 ~~~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~-------l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~---  213 (454)
T 1jl5_A          149 LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQ-------LEELP-ELQNLPFLTAIYADNNSLKKLPDL---  213 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC-------CSSCC-CCTTCTTCCEEECCSSCCSSCCCC---
T ss_pred             cCCCCCCCEEECCCCcCcccCC----CcccccEEECcCCc-------CCcCc-cccCCCCCCEEECCCCcCCcCCCC---
Confidence            6666777777777665443221    12356666666543       22222 456666777777776665555542   


Q ss_pred             CccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCc
Q 018079          150 LANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMK  228 (361)
Q Consensus       150 l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~  228 (361)
                      ..+|+.|++++| .+..+|.++.++ |+.|+++++. ++.++.                       .+++|++|+++++ 
T Consensus       214 ~~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N~-l~~l~~-----------------------~~~~L~~L~l~~N-  267 (454)
T 1jl5_A          214 PLSLESIVAGNN-ILEELPELQNLPFLTTIYADNNL-LKTLPD-----------------------LPPSLEALNVRDN-  267 (454)
T ss_dssp             CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCS-----------------------CCTTCCEEECCSS-
T ss_pred             cCcccEEECcCC-cCCcccccCCCCCCCEEECCCCc-CCcccc-----------------------cccccCEEECCCC-
Confidence            246677777765 444566666666 7777776532 333332                       2244555555443 


Q ss_pred             cchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc---cCC-cccccccCC-------
Q 018079          229 ELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME---ELP-ILEDHRTTD-------  297 (361)
Q Consensus       229 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~---~lp-~L~~L~l~~-------  297 (361)
                      .+..++.         .+++|+.|+++++ .++.++..   .++|+.|+++++ .+.   .+| +|+.|++++       
T Consensus       268 ~l~~l~~---------~~~~L~~L~ls~N-~l~~l~~~---~~~L~~L~l~~N-~l~~i~~~~~~L~~L~Ls~N~l~~lp  333 (454)
T 1jl5_A          268 YLTDLPE---------LPQSLTFLDVSEN-IFSGLSEL---PPNLYYLNASSN-EIRSLCDLPPSLEELNVSNNKLIELP  333 (454)
T ss_dssp             CCSCCCC---------CCTTCCEEECCSS-CCSEESCC---CTTCCEEECCSS-CCSEECCCCTTCCEEECCSSCCSCCC
T ss_pred             cccccCc---------ccCcCCEEECcCC-ccCcccCc---CCcCCEEECcCC-cCCcccCCcCcCCEEECCCCcccccc
Confidence            2222221         2344555555443 23332211   134444444432 111   121 333333332       


Q ss_pred             --CCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          298 --IPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       298 --l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                        +++|+.|++++| .++.+|.   .+++|+.|++++|+-
T Consensus       334 ~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          334 ALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSCC
T ss_pred             ccCCcCCEEECCCC-ccccccc---hhhhccEEECCCCCC
Confidence              578999999885 6777887   468899999988754

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.66  E-value=7e-16  Score=147.27  Aligned_cols=207  Identities=16%  Similarity=0.112  Sum_probs=127.7

Q ss_pred             CccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCCCcchh
Q 018079           16 PIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEE   94 (361)
Q Consensus        16 P~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~   94 (361)
                      |..++++++|++|++.++... ....+..++ ++ .+.+.+.. +...      .++++++|++|+++.|.....   ++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~-~L~Ls~n~-l~~~------~~~~l~~L~~L~Ls~N~l~~~---~~  102 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLT-KLICTSNN-ITTL------DLSQNTNLTYLACDSNKLTNL---DV  102 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCC-CCTTGGGCTTCS-EEECCSSC-CSCC------CCTTCTTCSEEECCSSCCSCC---CC
T ss_pred             ccChhHcCCCCEEEccCCCcc-cChhhcccCCCC-EEEccCCc-CCeE------ccccCCCCCEEECcCCCCcee---ec
Confidence            345788999999999766544 223344444 44 55544321 1211      278889999999998876553   35


Q ss_pred             hhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc
Q 018079           95 EEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP  174 (361)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~  174 (361)
                      ...++++.|++..+.       ...+  .+..+++|++|+++++....++  ++.+++|+.|++++|..++.+ .++.++
T Consensus       103 ~~l~~L~~L~L~~N~-------l~~l--~~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~  170 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNK-------LTKL--DVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQT  170 (457)
T ss_dssp             TTCTTCCEEECCSSC-------CSCC--CCTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCT
T ss_pred             CCCCcCCEEECCCCc-------CCee--cCCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-ccccCC
Confidence            667778888887764       2222  2667788888888887766654  567788888888887666555 466777


Q ss_pred             -cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEE
Q 018079          175 -LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLE  253 (361)
Q Consensus       175 -L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~  253 (361)
                       |+.|+++++ .++.++                      +..+++|+.|+++++ .+..+        .+..+++|+.|+
T Consensus       171 ~L~~L~ls~n-~l~~l~----------------------l~~l~~L~~L~l~~N-~l~~~--------~l~~l~~L~~L~  218 (457)
T 3bz5_A          171 QLTTLDCSFN-KITELD----------------------VSQNKLLNRLNCDTN-NITKL--------DLNQNIQLTFLD  218 (457)
T ss_dssp             TCCEEECCSS-CCCCCC----------------------CTTCTTCCEEECCSS-CCSCC--------CCTTCTTCSEEE
T ss_pred             cCCEEECCCC-ccceec----------------------cccCCCCCEEECcCC-cCCee--------ccccCCCCCEEE
Confidence             888888864 355443                      225566666666553 23222        123456666666


Q ss_pred             EecCCCCCccchhccCCCCcceEeeccC
Q 018079          254 VSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       254 l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                      ++++ .++.+|  +..+++|+.|+++++
T Consensus       219 Ls~N-~l~~ip--~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          219 CSSN-KLTEID--VTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CCSS-CCSCCC--CTTCTTCSEEECCSS
T ss_pred             CcCC-cccccC--ccccCCCCEEEeeCC
Confidence            6553 455554  445566666666553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.65  E-value=1.2e-15  Score=145.55  Aligned_cols=219  Identities=18%  Similarity=0.176  Sum_probs=136.2

Q ss_pred             CceeecCCCCcccccC-ccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      +++|++++| .+..++ ..++++++|++|++       ..+.+..+.                    +..+.++++|+.|
T Consensus        77 l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L-------s~n~i~~~~--------------------~~~~~~l~~L~~L  128 (452)
T 3zyi_A           77 TRYLNLMEN-NIQMIQADTFRHLHHLEVLQL-------GRNSIRQIE--------------------VGAFNGLASLNTL  128 (452)
T ss_dssp             CSEEECCSS-CCCEECTTTTTTCTTCCEEEC-------CSSCCCEEC--------------------TTTTTTCTTCCEE
T ss_pred             ccEEECcCC-cCceECHHHcCCCCCCCEEEC-------CCCccCCcC--------------------hhhccCcccCCEE
Confidence            589999999 888775 56999999999999       455554432                    0136678888888


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeee
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNL  158 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l  158 (361)
                      +++.|......                              ...+..+++|++|++++|....+|. .+..+++|+.|++
T Consensus       129 ~L~~n~l~~~~------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  178 (452)
T 3zyi_A          129 ELFDNWLTVIP------------------------------SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL  178 (452)
T ss_dssp             ECCSSCCSBCC------------------------------TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ECCCCcCCccC------------------------------hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeC
Confidence            88887643311                              2235556677777777776655443 3456777777777


Q ss_pred             cCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079          159 SLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY  235 (361)
Q Consensus       159 ~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~  235 (361)
                      ++|+.+..++.  +..++ |+.|+++++. +..++.                     +..+++|+.|+++++ .+..+..
T Consensus       179 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~---------------------~~~l~~L~~L~Ls~N-~l~~~~~  235 (452)
T 3zyi_A          179 GELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN---------------------LTPLVGLEELEMSGN-HFPEIRP  235 (452)
T ss_dssp             CCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC---------------------CTTCTTCCEEECTTS-CCSEECG
T ss_pred             CCCCCccccChhhccCCCCCCEEECCCCc-cccccc---------------------ccccccccEEECcCC-cCcccCc
Confidence            77666665554  56666 7777777643 443321                     336677777777764 3333322


Q ss_pred             hhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079          236 RITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                           ..+..+++|+.|+++++ .+..+ +..+..+++|+.|+++++ .++.+|.   -.+..+++|+.|++.+++
T Consensus       236 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          236 -----GSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPH---DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             -----GGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT---TSSTTCTTCCEEECCSSC
T ss_pred             -----ccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccCh---HHhccccCCCEEEccCCC
Confidence                 24556777777777664 44444 334555777777777764 4444442   123446666777766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.65  E-value=1e-15  Score=138.30  Aligned_cols=222  Identities=18%  Similarity=0.158  Sum_probs=158.5

Q ss_pred             CceeecCCCCcccccCcc-CCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|+++++ .+..+|.+ ++++++|++|++       ..+.+..++   ..               +..+.++++|+.|
T Consensus        30 l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L-------~~n~l~~~~---~~---------------~~~~~~~~~L~~L   83 (306)
T 2z66_A           30 ATRLELESN-KLQSLPHGVFDKLTQLTKLSL-------SSNGLSFKG---CC---------------SQSDFGTTSLKYL   83 (306)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCSEEEC-------CSSCCCEEE---EE---------------EHHHHSCSCCCEE
T ss_pred             CCEEECCCC-ccCccCHhHhhccccCCEEEC-------CCCccCccc---Cc---------------ccccccccccCEE
Confidence            678999999 89999987 799999999999       555554432   00               0123467899999


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc--hhhhcCccCCeee
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP--KWLTSLANLRELN  157 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L~  157 (361)
                      ++++|...                               .++..+..+++|++|+++++....++  ..+..+++|+.|+
T Consensus        84 ~Ls~n~i~-------------------------------~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  132 (306)
T 2z66_A           84 DLSFNGVI-------------------------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD  132 (306)
T ss_dssp             ECCSCSEE-------------------------------EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEE
T ss_pred             ECCCCccc-------------------------------cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEE
Confidence            99988632                               23345677899999999988766655  3677899999999


Q ss_pred             ecCCCCCCCCCC-CCCCc-cceEecccccccee--ecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079          158 LSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKR--VGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       158 l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      +++|.-....+. +..++ |+.|+++++. +..  .+..                    +..+++|++|+++++ .+...
T Consensus       133 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~--------------------~~~l~~L~~L~Ls~n-~l~~~  190 (306)
T 2z66_A          133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDI--------------------FTELRNLTFLDLSQC-QLEQL  190 (306)
T ss_dssp             CTTSCCEECSTTTTTTCTTCCEEECTTCE-EGGGEECSC--------------------CTTCTTCCEEECTTS-CCCEE
T ss_pred             CCCCcCCccchhhcccCcCCCEEECCCCc-cccccchhH--------------------HhhCcCCCEEECCCC-CcCCc
Confidence            999743333333 77888 9999999754 332  2222                    447899999999985 44444


Q ss_pred             hhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCC-CCccEEEEecCCC
Q 018079          234 NYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDI-PRLSSLRIGYCPK  311 (361)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l-~~L~~L~l~~c~~  311 (361)
                      ..     ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++.--...|.    .+..+ ++|+.|++++++.
T Consensus       191 ~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          191 SP-----TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ----ELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             CT-----TTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS----SCCCCCTTCCEEECTTCCE
T ss_pred             CH-----HHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH----HHHhhhccCCEEEccCCCe
Confidence            22     34567899999999985 5666654 566799999999998743333332    34556 4899999998653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.64  E-value=1.5e-15  Score=144.29  Aligned_cols=218  Identities=17%  Similarity=0.179  Sum_probs=123.0

Q ss_pred             CceeecCCCCcccccC-ccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMP-IGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      +++|++++| .+..++ ..++++++|++|++       ..+.+..+.                    +..+.++++|+.|
T Consensus        66 l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L-------s~n~i~~i~--------------------~~~~~~l~~L~~L  117 (440)
T 3zyj_A           66 TRLLNLHEN-QIQIIKVNSFKHLRHLEILQL-------SRNHIRTIE--------------------IGAFNGLANLNTL  117 (440)
T ss_dssp             CSEEECCSC-CCCEECTTTTSSCSSCCEEEC-------CSSCCCEEC--------------------GGGGTTCSSCCEE
T ss_pred             CcEEEccCC-cCCeeCHHHhhCCCCCCEEEC-------CCCcCCccC--------------------hhhccCCccCCEE
Confidence            578999999 888887 56999999999999       455444432                    1236677788888


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeee
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNL  158 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l  158 (361)
                      +++.|......                              ...+..+++|++|+++++....++. .+..+++|+.|++
T Consensus       118 ~L~~n~l~~~~------------------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l  167 (440)
T 3zyj_A          118 ELFDNRLTTIP------------------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDL  167 (440)
T ss_dssp             ECCSSCCSSCC------------------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ECCCCcCCeeC------------------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCC
Confidence            88877644321                              1234555666666666665544333 3445666666666


Q ss_pred             cCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079          159 SLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY  235 (361)
Q Consensus       159 ~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~  235 (361)
                      ++++.+..++.  +..++ |+.|+++++ .++.++.                     +..+++|+.|+++++ .+..+..
T Consensus       168 ~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---------------------~~~l~~L~~L~Ls~N-~l~~~~~  224 (440)
T 3zyj_A          168 GELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN---------------------LTPLIKLDELDLSGN-HLSAIRP  224 (440)
T ss_dssp             CCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---------------------CTTCSSCCEEECTTS-CCCEECT
T ss_pred             CCCCCcceeCcchhhcccccCeecCCCC-cCccccc---------------------cCCCcccCEEECCCC-ccCccCh
Confidence            66555554443  55556 666666653 2333331                     235566666666653 3333321


Q ss_pred             hhccccccccCCCccEEEEecCCCCCccc-hhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079          236 RITRKENISIMPRLSSLEVSSCNKLKALP-DYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                           ..+..+++|+.|++.++ .++.++ ..+..+++|+.|+++++ .++.+|.   -.+..+++|+.|+++++
T Consensus       225 -----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~N  289 (440)
T 3zyj_A          225 -----GSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-NLTLLPH---DLFTPLHHLERIHLHHN  289 (440)
T ss_dssp             -----TTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-CCCCCCT---TTTSSCTTCCEEECCSS
T ss_pred             -----hhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-CCCccCh---hHhccccCCCEEEcCCC
Confidence                 23445566666666553 344432 23444666666666653 3333331   12334555566665543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=5.4e-16  Score=140.78  Aligned_cols=205  Identities=16%  Similarity=0.123  Sum_probs=152.4

Q ss_pred             hcCCCCCCceEEEEe-cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC-CCchh
Q 018079           69 QLSNKKNLLRLHLQF-GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKW  146 (361)
Q Consensus        69 ~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~  146 (361)
                      .+.++++|+.|+++. +..                              ...++..+..+++|++|+++++... .+|..
T Consensus        71 ~l~~l~~L~~L~L~~~n~l------------------------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~  120 (313)
T 1ogq_A           71 SLANLPYLNFLYIGGINNL------------------------------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDF  120 (313)
T ss_dssp             GGGGCTTCSEEEEEEETTE------------------------------ESCCCGGGGGCTTCSEEEEEEECCEEECCGG
T ss_pred             hHhCCCCCCeeeCCCCCcc------------------------------cccCChhHhcCCCCCEEECcCCeeCCcCCHH
Confidence            467777888888873 542                              1233566788899999999999876 48888


Q ss_pred             hhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccce-eecccccccCCCCCCCCCCCCCCCcccCCC-CccEE
Q 018079          147 LTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVK-RVGNEFLGIEESSEDGPSSSSSSPSVIAFP-KLKSL  222 (361)
Q Consensus       147 ~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L  222 (361)
                      +..+++|+.|+++++.-...+|. +..++ |++|+++++. +. .++..                    +..++ +|++|
T Consensus       121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~--------------------l~~l~~~L~~L  179 (313)
T 1ogq_A          121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDS--------------------YGSFSKLFTSM  179 (313)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGG--------------------GGCCCTTCCEE
T ss_pred             HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHH--------------------HhhhhhcCcEE
Confidence            89999999999999744335665 78899 9999999865 44 45544                    33666 99999


Q ss_pred             EEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCcc
Q 018079          223 EIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLS  302 (361)
Q Consensus       223 ~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~  302 (361)
                      +++++.-....+.      .+..++ |+.|+++++..-...|..+..+++|+.|+++++.--...|     .+..+++|+
T Consensus       180 ~L~~N~l~~~~~~------~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~l~~L~  247 (313)
T 1ogq_A          180 TISRNRLTGKIPP------TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLN  247 (313)
T ss_dssp             ECCSSEEEEECCG------GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCC
T ss_pred             ECcCCeeeccCCh------HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-----cccccCCCC
Confidence            9998643223332      344565 9999999864333566677889999999999864333344     245689999


Q ss_pred             EEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          303 SLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       303 ~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      +|++++|.....+|..+..+++|+.|++++|+-.
T Consensus       248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             EEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            9999997555578989999999999999999654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.63  E-value=7.4e-15  Score=134.29  Aligned_cols=240  Identities=13%  Similarity=0.150  Sum_probs=143.8

Q ss_pred             hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhh
Q 018079           69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLT  148 (361)
Q Consensus        69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~  148 (361)
                      .+.++++|++|+++.|......                              +.++..+++|++|+++++....+|..+.
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~------------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~  122 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIH------------------------------EKAFSPLRKLQKLYISKNHLVEIPPNLP  122 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEC------------------------------GGGSTTCTTCCEEECCSSCCCSCCSSCC
T ss_pred             HhhCCCCCcEEECCCCccCccC------------------------------HhHhhCcCCCCEEECCCCcCCccCcccc
Confidence            3678888999988887654321                              3455666667777777666555555433


Q ss_pred             cCccCCeeeecCCCCCCCCCC--CCCCc-cceEecccccccee--ecccccccCCCCCCCCCCCC--CCCcccCCCCccE
Q 018079          149 SLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKR--VGNEFLGIEESSEDGPSSSS--SSPSVIAFPKLKS  221 (361)
Q Consensus       149 ~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~--l~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~L~~  221 (361)
                        ++|+.|+++++ .+..++.  +..++ |+.|+++++. ++.  .....+....+..+.++...  .++ ...+++|++
T Consensus       123 --~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~-~~~~~~L~~  197 (332)
T 2ft3_A          123 --SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLKLNYLRISEAKLTGIP-KDLPETLNE  197 (332)
T ss_dssp             --TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCCCSCCBCCSSBCSSCC-SSSCSSCSC
T ss_pred             --ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCccCEEECcCCCCCccC-ccccCCCCE
Confidence              56677777664 4444444  55666 7777766533 221  11111111122222222111  011 112368888


Q ss_pred             EEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCC
Q 018079          222 LEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPR  300 (361)
Q Consensus       222 L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~  300 (361)
                      |+++++ .+...+.     ..+..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.+|.    .+..+++
T Consensus       198 L~l~~n-~i~~~~~-----~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~----~l~~l~~  265 (332)
T 2ft3_A          198 LHLDHN-KIQAIEL-----EDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVPA----GLPDLKL  265 (332)
T ss_dssp             CBCCSS-CCCCCCT-----TSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT----TGGGCTT
T ss_pred             EECCCC-cCCccCH-----HHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCC-cCeecCh----hhhcCcc
Confidence            888874 3443332     34567889999999885 5666654 5677899999999985 5667775    4667899


Q ss_pred             ccEEEEecCCCCCccc-cccCC------CCCCCeEEEeCCccchhhccCCCCcccchhccCCceec
Q 018079          301 LSSLRIGYCPKLKVLP-DCLLR------TTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKW  359 (361)
Q Consensus       301 L~~L~l~~c~~l~~l~-~~l~~------l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~~  359 (361)
                      |+.|+++++ .++.++ ..+..      .++|+.+++.++|.....   .....+..+..+..+.+
T Consensus       266 L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~---~~~~~~~~l~~L~~l~l  327 (332)
T 2ft3_A          266 LQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE---VQPATFRCVTDRLAIQF  327 (332)
T ss_dssp             CCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG---SCGGGGTTBCCSTTEEC
T ss_pred             CCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccc---cCcccccccchhhhhhc
Confidence            999999984 667766 33332      467899999999854221   12334555555555544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.62  E-value=3.5e-15  Score=133.38  Aligned_cols=181  Identities=20%  Similarity=0.255  Sum_probs=138.9

Q ss_pred             HhcCCCCCccEEEecccCCCCC-chhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccC
Q 018079          122 EALQPPLNVEELWIIFYGGNIF-PKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIE  197 (361)
Q Consensus       122 ~~l~~l~~L~~L~l~~~~~~~~-p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~  197 (361)
                      +.+..+++|++|+++++....+ |..+..+++|+.|+++++..+..++.  +..++ |++|+++++. +..++...    
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~----  124 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGL----  124 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT----
T ss_pred             HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhH----
Confidence            4567889999999999877664 66778899999999999865776643  78889 9999999754 55544332    


Q ss_pred             CCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceE
Q 018079          198 ESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNL  276 (361)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L  276 (361)
                                     +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.. +..+++|++|
T Consensus       125 ---------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  182 (285)
T 1ozn_A          125 ---------------FRGLAALQYLYLQDN-ALQALPD-----DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRL  182 (285)
T ss_dssp             ---------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred             ---------------hhCCcCCCEEECCCC-cccccCH-----hHhccCCCccEEECCCC-cccccCHHHhcCccccCEE
Confidence                           447899999999985 4544433     34567899999999985 67777764 6779999999


Q ss_pred             eeccCCCcccC-CcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079          277 RIFFCENMEEL-PILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       277 ~l~~c~~l~~l-p~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~  335 (361)
                      +++++. +..+ |.    .+.++++|+.|+++++ .++.++ ..+..+++|+.|++++++-
T Consensus       183 ~l~~n~-l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          183 LLHQNR-VAHVHPH----AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             ECCSSC-CCEECTT----TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             ECCCCc-ccccCHh----HccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence            999864 3333 33    5667899999999985 666676 5688999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.61  E-value=1.4e-14  Score=143.51  Aligned_cols=131  Identities=12%  Similarity=-0.064  Sum_probs=86.2

Q ss_pred             CceeecCCCCcccccCc-cCCCccccceecceeeecCC-CCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      +++|++++| .++.+|+ .|.++++||+|++.++.... ....+..++ |+ .+.+.+-. +.   ...+..+.++++|+
T Consensus        54 ~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~-~L~Ls~N~-l~---~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           54 TKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS-TLILTGNP-IQ---SLALGAFSGLSSLQ  127 (635)
T ss_dssp             CCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC-EEECTTCC-CC---EECGGGGTTCTTCC
T ss_pred             CCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCC-EEEccCCc-CC---CCCHHHhcCCCCCC
Confidence            578999999 8999985 59999999999995543321 111223333 33 44443311 11   11223578899999


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI  142 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~  142 (361)
                      +|+++.|.........+...++++.|++..+.-.     ....+..+..+++|++|+++++....
T Consensus       128 ~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~-----~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          128 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-----SFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCC-----CCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             EEECCCCcCCCCChhhhhcCcccCeeccccCccc-----cCCCchhhccchhhhhhcccCccccc
Confidence            9999988877766667788888899988876410     01124556677888888888776543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.60  E-value=2.3e-16  Score=144.43  Aligned_cols=166  Identities=22%  Similarity=0.231  Sum_probs=114.5

Q ss_pred             HHHHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeecccc
Q 018079          119 QLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEF  193 (361)
Q Consensus       119 ~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~  193 (361)
                      .+...+..+++|++|++++|.... .+..++.+++|+.|++++|..+..  ++. +..++ |+.|++++|..++......
T Consensus       109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~  188 (336)
T 2ast_B          109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV  188 (336)
T ss_dssp             HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred             HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH
Confidence            366677888889999998886543 566677888999999988855552  444 56678 9999998874555421111


Q ss_pred             cccCCCCCCCCCCCCCCCcccCCC-CccEEEEcCCc-cchhhhhhhccccccccCCCccEEEEecCCCCC-ccchhccCC
Q 018079          194 LGIEESSEDGPSSSSSSPSVIAFP-KLKSLEIDGMK-ELEEWNYRITRKENISIMPRLSSLEVSSCNKLK-ALPDYLLQM  270 (361)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L~~~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l  270 (361)
                      .                  +..++ +|++|++++|. .+.+...    ...+..+++|+.|++++|..++ ..+..+..+
T Consensus       189 ~------------------~~~l~~~L~~L~l~~~~~~~~~~~l----~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          189 A------------------VAHVSETITQLNLSGYRKNLQKSDL----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             H------------------HHHSCTTCCEEECCSCGGGSCHHHH----HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             H------------------HHhcccCCCEEEeCCCcccCCHHHH----HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence            0                  33788 99999999875 4432222    2244578999999999886454 455567778


Q ss_pred             CCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079          271 TVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       271 ~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                      ++|++|++++|..+..- .+  -.+.++++|+.|++++|
T Consensus       247 ~~L~~L~l~~~~~~~~~-~~--~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          247 NYLQHLSLSRCYDIIPE-TL--LELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTCTTCCGG-GG--GGGGGCTTCCEEECTTS
T ss_pred             CCCCEeeCCCCCCCCHH-HH--HHHhcCCCCCEEeccCc
Confidence            99999999998643221 11  13556889999999988

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.60  E-value=6.6e-15  Score=133.27  Aligned_cols=190  Identities=16%  Similarity=0.204  Sum_probs=140.8

Q ss_pred             CCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCc
Q 018079           72 NKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLA  151 (361)
Q Consensus        72 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~  151 (361)
                      ++++|++|+++.+....                                ..++..+++|++|++++|....++. +..++
T Consensus        39 ~l~~L~~L~l~~~~i~~--------------------------------l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~   85 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT--------------------------------IEGVQYLNNLIGLELKDNQITDLAP-LKNLT   85 (308)
T ss_dssp             HHHTCCEEECTTSCCCC--------------------------------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCC
T ss_pred             HcCCcCEEEeeCCCccC--------------------------------chhhhccCCCCEEEccCCcCCCChh-HccCC
Confidence            46688889888776433                                1245667889999999888777776 77888


Q ss_pred             cCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccc
Q 018079          152 NLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKEL  230 (361)
Q Consensus       152 ~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l  230 (361)
                      +|+.|++++| .+..++.+..++ |+.|+++++. ++.++.                     +..+++|+.|+++++ .+
T Consensus        86 ~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~---------------------l~~l~~L~~L~l~~n-~l  141 (308)
T 1h6u_A           86 KITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQ-ITDVTP---------------------LAGLSNLQVLYLDLN-QI  141 (308)
T ss_dssp             SCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSC-CCCCGG---------------------GTTCTTCCEEECCSS-CC
T ss_pred             CCCEEEccCC-cCCCchhhcCCCCCCEEECCCCC-CCCchh---------------------hcCCCCCCEEECCCC-cc
Confidence            9999999886 466777788888 9999998754 554432                     447889999999875 34


Q ss_pred             hhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079          231 EEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                      ..++.       +..+++|+.|+++++ .++.++. +..+++|+.|+++++ .++.++.     +..+++|+.|++++| 
T Consensus       142 ~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~L~~N-  205 (308)
T 1h6u_A          142 TNISP-------LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDN-KISDISP-----LASLPNLIEVHLKNN-  205 (308)
T ss_dssp             CCCGG-------GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECTTS-
T ss_pred             CcCcc-------ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCC-ccCcChh-----hcCCCCCCEEEccCC-
Confidence            43322       457888999999886 6777765 777889999999885 4555553     566788899999885 


Q ss_pred             CCCccccccCCCCCCCeEEEeCCcc
Q 018079          311 KLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       311 ~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      .++.++. +..+++|+.|++++|+-
T Consensus       206 ~l~~~~~-l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          206 QISDVSP-LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred             ccCcccc-ccCCCCCCEEEccCCee
Confidence            5666664 78888999999888763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.60  E-value=1.4e-15  Score=138.30  Aligned_cols=228  Identities=11%  Similarity=0.038  Sum_probs=149.8

Q ss_pred             hHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC
Q 018079           62 VDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN  141 (361)
Q Consensus        62 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  141 (361)
                      ...........+++|++|+++.|.........+...++++.|++..+.       ..... .+..+++|++|++++|...
T Consensus        22 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-------l~~~~-~~~~l~~L~~L~Ls~n~l~   93 (317)
T 3o53_A           22 LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------LYETL-DLESLSTLRTLDLNNNYVQ   93 (317)
T ss_dssp             HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-------CEEEE-EETTCTTCCEEECCSSEEE
T ss_pred             hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-------CCcch-hhhhcCCCCEEECcCCccc
Confidence            344445556677788889888887665444455555666666665543       11111 2566677777777766544


Q ss_pred             CCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCcc
Q 018079          142 IFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLK  220 (361)
Q Consensus       142 ~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~  220 (361)
                      .++    ..++|+.|+++++ .+..++. ..++ |+.|+++++. ++.++...                   +..+++|+
T Consensus        94 ~l~----~~~~L~~L~l~~n-~l~~~~~-~~~~~L~~L~l~~N~-l~~~~~~~-------------------~~~l~~L~  147 (317)
T 3o53_A           94 ELL----VGPSIETLHAANN-NISRVSC-SRGQGKKNIYLANNK-ITMLRDLD-------------------EGCRSRVQ  147 (317)
T ss_dssp             EEE----ECTTCCEEECCSS-CCSEEEE-CCCSSCEEEECCSSC-CCSGGGBC-------------------TGGGSSEE
T ss_pred             ccc----CCCCcCEEECCCC-ccCCcCc-cccCCCCEEECCCCC-CCCccchh-------------------hhccCCCC
Confidence            443    3467777777765 3443332 3356 7777777643 44443322                   34678899


Q ss_pred             EEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCC
Q 018079          221 SLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPR  300 (361)
Q Consensus       221 ~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~  300 (361)
                      +|+++++ .+.....    ......+++|+.|+++++ .++.++... .+++|++|+++++ .++.+|.    .+..+++
T Consensus       148 ~L~Ls~N-~l~~~~~----~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~  215 (317)
T 3o53_A          148 YLDLKLN-EIDTVNF----AELAASSDTLEHLNLQYN-FIYDVKGQV-VFAKLKTLDLSSN-KLAFMGP----EFQSAAG  215 (317)
T ss_dssp             EEECTTS-CCCEEEG----GGGGGGTTTCCEEECTTS-CCCEEECCC-CCTTCCEEECCSS-CCCEECG----GGGGGTT
T ss_pred             EEECCCC-CCCcccH----HHHhhccCcCCEEECCCC-cCccccccc-ccccCCEEECCCC-cCCcchh----hhcccCc
Confidence            9999875 4444332    122236788999999885 576665433 4888999999885 5555553    3566899


Q ss_pred             ccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          301 LSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       301 L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      |+.|++++| .++.+|..+..+++|+.|++++++-.
T Consensus       216 L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          216 VTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             ccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence            999999985 77889988999999999999998765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.60  E-value=1e-14  Score=130.44  Aligned_cols=218  Identities=18%  Similarity=0.212  Sum_probs=149.4

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL   81 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l   81 (361)
                      ++++.++. .+..+|.++  ..+|++|++       ..+.+..+.                    ...+.++++|++|++
T Consensus        14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l-------~~n~i~~~~--------------------~~~~~~~~~L~~L~l   63 (285)
T 1ozn_A           14 VTTSCPQQ-GLQAVPVGI--PAASQRIFL-------HGNRISHVP--------------------AASFRACRNLTILWL   63 (285)
T ss_dssp             CEEECCSS-CCSSCCTTC--CTTCSEEEC-------TTSCCCEEC--------------------TTTTTTCTTCCEEEC
T ss_pred             eEEEcCcC-CcccCCcCC--CCCceEEEe-------eCCcCCccC--------------------HHHcccCCCCCEEEC
Confidence            35677777 788888755  468888888       555555432                    013667888999999


Q ss_pred             EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccC-CCCC-chhhhcCccCCeeeec
Q 018079           82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYG-GNIF-PKWLTSLANLRELNLS  159 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-p~~~~~l~~L~~L~l~  159 (361)
                      +.|....                              ..+..+..+++|++|+++++. ...+ |..+..+++|+.|+++
T Consensus        64 ~~n~l~~------------------------------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~  113 (285)
T 1ozn_A           64 HSNVLAR------------------------------IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (285)
T ss_dssp             CSSCCCE------------------------------ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCCccce------------------------------eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC
Confidence            8876432                              113456777888999998886 4444 5667788889999988


Q ss_pred             CCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhh
Q 018079          160 LCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYR  236 (361)
Q Consensus       160 ~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~  236 (361)
                      ++ .+..++.  +..++ |+.|+++++. +..++...                   ++.+++|++|+++++ .++.++. 
T Consensus       114 ~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~~-  170 (285)
T 1ozn_A          114 RC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDT-------------------FRDLGNLTHLFLHGN-RISSVPE-  170 (285)
T ss_dssp             TS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------------------TTTCTTCCEEECCSS-CCCEECT-
T ss_pred             CC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhH-------------------hccCCCccEEECCCC-cccccCH-
Confidence            86 4554433  67788 9999888743 55554432                   346788999998875 4554443 


Q ss_pred             hccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCC
Q 018079          237 ITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPK  311 (361)
Q Consensus       237 ~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~  311 (361)
                          ..+..+++|+.|+++++ .+..+ |..+..+++|+.|+++++ .++.++.   -.+..+++|+.|++++++.
T Consensus       171 ----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~---~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          171 ----RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT---EALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             ----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCH---HHHTTCTTCCEEECCSSCE
T ss_pred             ----HHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC-cCCcCCH---HHcccCcccCEEeccCCCc
Confidence                23557888999999886 45554 667777888999999885 4444442   1356678888888888654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.60  E-value=8.4e-16  Score=147.95  Aligned_cols=169  Identities=13%  Similarity=0.029  Sum_probs=103.7

Q ss_pred             CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079          127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG  203 (361)
Q Consensus       127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  203 (361)
                      .++|++|++++|....++..  .+++|+.|++++| .+..+++  ++.++ |+.|+++++. +...+...+         
T Consensus        98 ~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l---------  164 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL---------  164 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGG---------
T ss_pred             CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHH---------
Confidence            36777777777766554432  4667777777775 3443332  55667 7777777643 444332221         


Q ss_pred             CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCC
Q 018079          204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCEN  283 (361)
Q Consensus       204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  283 (361)
                               ...+++|++|+++++ .+..++.       ...+++|+.|+++++ .++.+|..+..+++|+.|+++++ .
T Consensus       165 ---------~~~l~~L~~L~Ls~N-~l~~~~~-------~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~  225 (487)
T 3oja_A          165 ---------AASSDTLEHLNLQYN-FIYDVKG-------QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-K  225 (487)
T ss_dssp             ---------GGGTTTCCEEECTTS-CCCEEEC-------CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-C
T ss_pred             ---------hhhCCcccEEecCCC-ccccccc-------cccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-c
Confidence                     115677777777774 3443322       224777777777774 56667666777777777777773 4


Q ss_pred             cccCCcccccccCCCCCccEEEEecCCCC-CccccccCCCCCCCeEEEe
Q 018079          284 MEELPILEDHRTTDIPRLSSLRIGYCPKL-KVLPDCLLRTTTLQKLTIW  331 (361)
Q Consensus       284 l~~lp~L~~L~l~~l~~L~~L~l~~c~~l-~~l~~~l~~l~~L~~L~l~  331 (361)
                      +..+|.    .+..+++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus       226 l~~lp~----~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          226 LVLIEK----ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CCEECT----TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             Ccccch----hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            555554    3555677777777775443 2455666666666666554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.59  E-value=4.1e-14  Score=140.04  Aligned_cols=111  Identities=19%  Similarity=0.224  Sum_probs=80.5

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILE  291 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~  291 (361)
                      +..+++|+.|+++++.....+.     +..+..+++|+.|++++| +++.+ |..+..+++|++|+++++ .++.++.  
T Consensus       465 ~~~~~~L~~L~Ls~N~~~~~~~-----~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~--  535 (635)
T 4g8a_A          465 FNGLSSLEVLKMAGNSFQENFL-----PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT--  535 (635)
T ss_dssp             TTTCTTCCEEECTTCEEGGGEE-----CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCBCCC--
T ss_pred             cccchhhhhhhhhhcccccccC-----chhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCC-cCCCCCh--
Confidence            4566778888887754443322     235667889999999886 56666 456777999999999985 5555542  


Q ss_pred             ccccCCCCCccEEEEecCCCCCcc-ccccCCC-CCCCeEEEeCCc
Q 018079          292 DHRTTDIPRLSSLRIGYCPKLKVL-PDCLLRT-TTLQKLTIWGCP  334 (361)
Q Consensus       292 ~L~l~~l~~L~~L~l~~c~~l~~l-~~~l~~l-~~L~~L~l~~c~  334 (361)
                       ..++++++|+.|+++++ +++.+ |..+.++ ++|+.|+++++|
T Consensus       536 -~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          536 -FPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             -GGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             -hHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence             24677899999999995 55554 5778887 689999998765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.57  E-value=2.8e-16  Score=143.81  Aligned_cols=182  Identities=15%  Similarity=0.166  Sum_probs=135.9

Q ss_pred             hcCCCCCccEEEecccCCCC--CchhhhcCccCCeeeecCCCCCC-CCCC-CCCCc-cceEecccccccee--ecccccc
Q 018079          123 ALQPPLNVEELWIIFYGGNI--FPKWLTSLANLRELNLSLCFNCE-HLPQ-LGKLP-LEKLQLKNLKSVKR--VGNEFLG  195 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~-~l~~-l~~l~-L~~L~l~~~~~l~~--l~~~~~~  195 (361)
                      .+..+++|++|++++|....  ++..+..+++|+.|++++|. +. ..+. ++.++ |++|++++|..++.  ++..   
T Consensus        88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~---  163 (336)
T 2ast_B           88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL---  163 (336)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH---
T ss_pred             hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH---
Confidence            35677899999999887543  66777789999999999984 43 3333 67789 99999999865553  2221   


Q ss_pred             cCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCC-CccEEEEecCC-CC--CccchhccCCC
Q 018079          196 IEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMP-RLSSLEVSSCN-KL--KALPDYLLQMT  271 (361)
Q Consensus       196 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~-~L~~L~l~~c~-~l--~~l~~~~~~l~  271 (361)
                                       +..+++|++|++++|..+++...    ...+..++ +|+.|++++|. .+  ..++..+..++
T Consensus       164 -----------------~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~  222 (336)
T 2ast_B          164 -----------------LSSCSRLDELNLSWCFDFTEKHV----QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  222 (336)
T ss_dssp             -----------------HHHCTTCCEEECCCCTTCCHHHH----HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             -----------------HhcCCCCCEEcCCCCCCcChHHH----HHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence                             34789999999999866665322    23456799 99999999974 34  34666777899


Q ss_pred             CcceEeeccCCCccc-CCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079          272 VLQNLRIFFCENMEE-LPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       272 ~L~~L~l~~c~~l~~-lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c  333 (361)
                      +|++|++++|..++. .+.    .+..+++|+.|++++|..+..-. ..+..+++|+.|++++|
T Consensus       223 ~L~~L~l~~~~~l~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          223 NLVHLDLSDSVMLKNDCFQ----EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TCSEEECTTCTTCCGGGGG----GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCEEeCCCCCcCCHHHHH----HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            999999999875542 222    45668999999999997543322 35778999999999999

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.57  E-value=6.4e-15  Score=128.26  Aligned_cols=179  Identities=13%  Similarity=0.120  Sum_probs=117.2

Q ss_pred             hcCCCCCccEEEecccC-CCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccC
Q 018079          123 ALQPPLNVEELWIIFYG-GNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIE  197 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~-~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~  197 (361)
                      .+..+++|++|+++++. ...++. .+..+++|+.|++++|+.+..++.  +..++ |+.|+++++. ++.++.      
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~------  122 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD------  122 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC------
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc------
Confidence            45667788888888875 545544 456778888888887556666554  56777 8888887643 444443      


Q ss_pred             CCCCCCCCCCCCCCcccCCCCcc---EEEEcCCccchhhhhhhccccccccCCCcc-EEEEecCCCCCccchhccCCCCc
Q 018079          198 ESSEDGPSSSSSSPSVIAFPKLK---SLEIDGMKELEEWNYRITRKENISIMPRLS-SLEVSSCNKLKALPDYLLQMTVL  273 (361)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~L~---~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~-~L~l~~c~~l~~l~~~~~~l~~L  273 (361)
                                     +..+++|+   +|+++++..++.++.     ..+..+++|+ .|+++++ .++.+|......++|
T Consensus       123 ---------------~~~l~~L~~L~~L~l~~N~~l~~i~~-----~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L  181 (239)
T 2xwt_C          123 ---------------LTKVYSTDIFFILEITDNPYMTSIPV-----NAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKL  181 (239)
T ss_dssp             ---------------CTTCCBCCSEEEEEEESCTTCCEECT-----TTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEE
T ss_pred             ---------------cccccccccccEEECCCCcchhhcCc-----ccccchhcceeEEEcCCC-CCcccCHhhcCCCCC
Confidence                           22455555   888877545555443     3355677888 8888774 566777665555778


Q ss_pred             ceEeeccCCCcccCCcccccccCCC-CCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          274 QNLRIFFCENMEELPILEDHRTTDI-PRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       274 ~~L~l~~c~~l~~lp~L~~L~l~~l-~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      +.|++++++.++.+|.   -.+.++ ++|+.|++++ +.++.+|..  .+++|+.|++.++..
T Consensus       182 ~~L~L~~n~~l~~i~~---~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~L~~L~l~~~~~  238 (239)
T 2xwt_C          182 DAVYLNKNKYLTVIDK---DAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEHLKELIARNTWT  238 (239)
T ss_dssp             EEEECTTCTTCCEECT---TTTTTCSBCCSEEECTT-CCCCCCCCT--TCTTCSEEECTTC--
T ss_pred             CEEEcCCCCCcccCCH---HHhhccccCCcEEECCC-CccccCChh--HhccCceeeccCccC
Confidence            8888887655666542   134556 7788888877 466777754  567788888877654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.56  E-value=1e-15  Score=150.80  Aligned_cols=204  Identities=15%  Similarity=0.189  Sum_probs=106.5

Q ss_pred             cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeecccccccCCC
Q 018079          124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEES  199 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~  199 (361)
                      +..+++|+++.+.++....+|..+..+++|+.|++++|. +..  +.. +..++ |+.|+++++..-..++........+
T Consensus       266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred             hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCC
Confidence            334445555555554444456666677788888888775 331  111 45666 7777765321100000000000000


Q ss_pred             CCCCCCC----------CCCC-----C-cccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEec---CCCC
Q 018079          200 SEDGPSS----------SSSS-----P-SVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSS---CNKL  260 (361)
Q Consensus       200 ~~~~~~~----------~~~~-----~-~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~---c~~l  260 (361)
                      ..+.+..          ....     . ....+++|++|++ +|..+.....    ......+++|+.|++.+   |+.+
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~----~~l~~~~~~L~~L~l~~~~~~n~l  419 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESL----ESIGTYLKNLCDFRLVLLDREERI  419 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHH----HHHHHHCCSCCEEEEEECSCCSCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHH----HHHHhhCCCCcEEEEeecCCCccc
Confidence            0000000          0000     0 0123566666666 2333433222    11122477888888873   4566


Q ss_pred             Cccc------hhccCCCCcceEeeccCCC-cc---------cCCcccccccCC--------------CCCccEEEEecCC
Q 018079          261 KALP------DYLLQMTVLQNLRIFFCEN-ME---------ELPILEDHRTTD--------------IPRLSSLRIGYCP  310 (361)
Q Consensus       261 ~~l~------~~~~~l~~L~~L~l~~c~~-l~---------~lp~L~~L~l~~--------------l~~L~~L~l~~c~  310 (361)
                      +..|      ..+..+++|+.|+++.|.. +.         .+|+|+.|++++              +++|++|++++|+
T Consensus       420 ~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~  499 (592)
T 3ogk_B          420 TDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC  499 (592)
T ss_dssp             SSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred             cCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC
Confidence            5432      2245588888888876542 21         256677776655              6788899998887


Q ss_pred             CCCc--cccccCCCCCCCeEEEeCCc
Q 018079          311 KLKV--LPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       311 ~l~~--l~~~l~~l~~L~~L~l~~c~  334 (361)
                       ++.  ++..+..+++|++|++++|.
T Consensus       500 -l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          500 -FSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             -CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             -CcHHHHHHHHHhcCccCeeECcCCc
Confidence             443  34445677888999999887

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.56  E-value=4.2e-14  Score=127.97  Aligned_cols=152  Identities=14%  Similarity=0.222  Sum_probs=91.8

Q ss_pred             cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079          124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED  202 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~  202 (361)
                      +..+++|++|+++++....++ .+..+++|+.|++++| .+..++.+..++ |+.|+++++. +..++.           
T Consensus        81 ~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~-----------  146 (308)
T 1h6u_A           81 LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQ-ITNISP-----------  146 (308)
T ss_dssp             GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG-----------
T ss_pred             HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCcCcc-----------
Confidence            566667777777776655554 4566777777777775 455555566677 7777777643 343332           


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCC
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE  282 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  282 (361)
                                +..+++|+.|+++++ .+..++.       +..+++|+.|+++++ .++.++. +..+++|++|+++++ 
T Consensus       147 ----------l~~l~~L~~L~l~~n-~l~~~~~-------l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N-  205 (308)
T 1h6u_A          147 ----------LAGLTNLQYLSIGNA-QVSDLTP-------LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-  205 (308)
T ss_dssp             ----------GGGCTTCCEEECCSS-CCCCCGG-------GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-
T ss_pred             ----------ccCCCCccEEEccCC-cCCCChh-------hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCC-
Confidence                      336677777777764 3333221       446677777777764 4555553 556777777777764 


Q ss_pred             CcccCCcccccccCCCCCccEEEEecCCCCCccc
Q 018079          283 NMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP  316 (361)
Q Consensus       283 ~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~  316 (361)
                      .+..++     .+..+++|+.|+++++ .++..|
T Consensus       206 ~l~~~~-----~l~~l~~L~~L~l~~N-~i~~~~  233 (308)
T 1h6u_A          206 QISDVS-----PLANTSNLFIVTLTNQ-TITNQP  233 (308)
T ss_dssp             CCCBCG-----GGTTCTTCCEEEEEEE-EEECCC
T ss_pred             ccCccc-----cccCCCCCCEEEccCC-eeecCC
Confidence            444444     2455677777777764 334443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.56  E-value=1.9e-15  Score=148.80  Aligned_cols=177  Identities=14%  Similarity=0.014  Sum_probs=102.7

Q ss_pred             CceeecCCCCccc---ccCccCC------------CccccceecceeeecCC-CCCccccc--c-eeceeEEcCCCCCCC
Q 018079            1 MRSLLNFGTNSLK---YMPIGIS------------KLTSLRRLDKFVVGGGV-DGSNTGRL--Q-LRGECSIEGLCNVSH   61 (361)
Q Consensus         1 L~~L~l~~~~~l~---~lP~~i~------------~L~~L~~L~l~~~~~~~-~~~~l~~L--~-L~~~l~l~~l~~~~~   61 (361)
                      |++|++++|..+.   .+|..++            .+++|++|++..+.... ....+...  . |+ .+.+..+.... 
T Consensus        75 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~-~L~L~~~~~~~-  152 (592)
T 3ogk_B           75 LRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLE-TLKLDKCSGFT-  152 (592)
T ss_dssp             CSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCC-EEEEESCEEEE-
T ss_pred             CeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCc-EEECcCCCCcC-
Confidence            6789998875432   3454444            67899999997654321 01111111  1 33 55555544221 


Q ss_pred             hHHHHHhhcCCCCCCceEEEEecCCCCCC----cchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecc
Q 018079           62 VDEAERLQLSNKKNLLRLHLQFGGKDEDW----RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIF  137 (361)
Q Consensus        62 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  137 (361)
                       .........++++|++|++++|......    .......+.++.|++..+.--.  .....+...+..+++|++|++.+
T Consensus       153 -~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~--~~~~~l~~~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          153 -TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK--ISPKDLETIARNCRSLVSVKVGD  229 (592)
T ss_dssp             -HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSS--CCHHHHHHHHHHCTTCCEEECSS
T ss_pred             -HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCc--cCHHHHHHHHhhCCCCcEEeccC
Confidence             2234444567899999999887543221    1123456677777776543110  00234455556678899999998


Q ss_pred             cCCCCCchhhhcCccCCeeeecCCCCCC---CC-CCCCCCc-cceEeccc
Q 018079          138 YGGNIFPKWLTSLANLRELNLSLCFNCE---HL-PQLGKLP-LEKLQLKN  182 (361)
Q Consensus       138 ~~~~~~p~~~~~l~~L~~L~l~~~~~~~---~l-~~l~~l~-L~~L~l~~  182 (361)
                      |....+|..+..+++|+.|.++.+....   .. ..+..++ |+.+.+++
T Consensus       230 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  279 (592)
T 3ogk_B          230 FEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY  279 (592)
T ss_dssp             CBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT
T ss_pred             ccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccc
Confidence            8776677777888888888887542221   11 1244455 66666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=1.6e-14  Score=125.64  Aligned_cols=208  Identities=12%  Similarity=0.074  Sum_probs=141.8

Q ss_pred             CCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecC-CC
Q 018079            9 TNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGG-KD   87 (361)
Q Consensus         9 ~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~   87 (361)
                      |..+..+|. +..  +|++|++       ..+.+..++                    ...+.++++|+.|+++.|. ..
T Consensus        20 c~~l~~ip~-~~~--~l~~L~l-------~~n~l~~i~--------------------~~~~~~l~~L~~L~l~~n~~l~   69 (239)
T 2xwt_C           20 CKDIQRIPS-LPP--STQTLKL-------IETHLRTIP--------------------SHAFSNLPNISRIYVSIDVTLQ   69 (239)
T ss_dssp             ECSCSSCCC-CCT--TCCEEEE-------ESCCCSEEC--------------------TTTTTTCTTCCEEEEECCSSCC
T ss_pred             ccCccccCC-CCC--cccEEEE-------eCCcceEEC--------------------HHHccCCCCCcEEeCCCCCCcc
Confidence            435777887 543  7888888       444444432                    0136678899999999885 32


Q ss_pred             CCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecc-cCCCCCc-hhhhcCccCCeeeecCCCCCC
Q 018079           88 EDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIF-YGGNIFP-KWLTSLANLRELNLSLCFNCE  165 (361)
Q Consensus        88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~p-~~~~~l~~L~~L~l~~~~~~~  165 (361)
                      .                            .  ....+..+++|++|++.+ +....+| ..+..+++|+.|+++++ .+.
T Consensus        70 ~----------------------------i--~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n-~l~  118 (239)
T 2xwt_C           70 Q----------------------------L--ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLK  118 (239)
T ss_dssp             E----------------------------E--CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEE-CCC
T ss_pred             e----------------------------e--CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCC-CCc
Confidence            2                            0  023456778899999987 6665555 45567888999999886 566


Q ss_pred             CCCCCCCCc-cc---eEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCcc-EEEEcCCccchhhhhhhccc
Q 018079          166 HLPQLGKLP-LE---KLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLK-SLEIDGMKELEEWNYRITRK  240 (361)
Q Consensus       166 ~l~~l~~l~-L~---~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~l~~~~~~~~~~  240 (361)
                      .+|.+..++ |+   .|+++++..++.++...                   +..+++|+ +|+++++ .++.++.     
T Consensus       119 ~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~-------------------~~~l~~L~~~L~l~~n-~l~~i~~-----  173 (239)
T 2xwt_C          119 MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA-------------------FQGLCNETLTLKLYNN-GFTSVQG-----  173 (239)
T ss_dssp             SCCCCTTCCBCCSEEEEEEESCTTCCEECTTT-------------------TTTTBSSEEEEECCSC-CCCEECT-----
T ss_pred             cccccccccccccccEEECCCCcchhhcCccc-------------------ccchhcceeEEEcCCC-CCcccCH-----
Confidence            677777777 77   89998764677776543                   33678888 9998874 4554443     


Q ss_pred             cccccCCCccEEEEecCCCCCccchh-ccCC-CCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079          241 ENISIMPRLSSLEVSSCNKLKALPDY-LLQM-TVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       241 ~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l-~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                      ..+.. ++|+.|+++++..++.++.. +..+ ++|+.|++++ ..++.+|.      ..+++|+.|++.++.
T Consensus       174 ~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~------~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          174 YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPS------KGLEHLKELIARNTW  237 (239)
T ss_dssp             TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCC------TTCTTCSEEECTTC-
T ss_pred             hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCCh------hHhccCceeeccCcc
Confidence            12223 78999999886557777654 5567 8999999988 45666663      247788888887764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=1.6e-15  Score=144.72  Aligned_cols=239  Identities=22%  Similarity=0.200  Sum_probs=137.5

Q ss_pred             CCCCCceEEEEecCCCCCC----cchhhhhhcccccccccccccccchhhHHHHHhcC-CCCCccEEEecccCCCC----
Q 018079           72 NKKNLLRLHLQFGGKDEDW----RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQ-PPLNVEELWIIFYGGNI----  142 (361)
Q Consensus        72 ~l~~L~~L~l~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~----  142 (361)
                      ..++|++|++++|......    ...+...++++.|++..+.- .+. ....+...+. ..++|++|++++|....    
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  217 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEA-GVRVLCQGLKDSPCQLEALKLESCGVTSDNCR  217 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBC-HHH-HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCc-chH-HHHHHHHHHhcCCCCceEEEccCCCCcHHHHH
Confidence            3556777777766543321    11223335666666665431 000 0112222232 35688899998887654    


Q ss_pred             -CchhhhcCccCCeeeecCCCCCCCC------CC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcc
Q 018079          143 -FPKWLTSLANLRELNLSLCFNCEHL------PQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSV  213 (361)
Q Consensus       143 -~p~~~~~l~~L~~L~l~~~~~~~~l------~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l  213 (361)
                       ++.++..+++|+.|++++| .+...      +. ...++ |+.|++++|. ++.........               .+
T Consensus       218 ~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~---------------~l  280 (461)
T 1z7x_W          218 DLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCR---------------VL  280 (461)
T ss_dssp             HHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH---------------HH
T ss_pred             HHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHH---------------HH
Confidence             4666677888999998887 34321      11 23567 8899988763 44421111100               03


Q ss_pred             cCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCc-----cchhccCCCCcceEeeccCCCcccC
Q 018079          214 IAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKA-----LPDYLLQMTVLQNLRIFFCENMEEL  287 (361)
Q Consensus       214 ~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~l  287 (361)
                      ..+++|++|+++++ .+.+... .+. .......++|+.|++++|. ++.     ++..+..+++|++|+++++ .+...
T Consensus       281 ~~~~~L~~L~Ls~n-~i~~~~~~~l~-~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~  356 (461)
T 1z7x_W          281 RAKESLKELSLAGN-ELGDEGARLLC-ETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDA  356 (461)
T ss_dssp             HHCTTCCEEECTTC-CCHHHHHHHHH-HHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHH
T ss_pred             hhCCCcceEECCCC-CCchHHHHHHH-HHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccc
Confidence            35788999999875 3433221 000 0111234689999998874 442     4555666889999999886 34321


Q ss_pred             C--cccccccC-CCCCccEEEEecCCCCC-----ccccccCCCCCCCeEEEeCCcc
Q 018079          288 P--ILEDHRTT-DIPRLSSLRIGYCPKLK-----VLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       288 p--~L~~L~l~-~l~~L~~L~l~~c~~l~-----~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      .  .+.. .+. ..++|++|++++| .++     .+|..+..+++|++|++++|+-
T Consensus       357 ~~~~l~~-~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          357 GVRELCQ-GLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHH-HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             cHHHHHH-HHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence            1  1100 111 1568888888887 444     5777777788889999988853

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.55  E-value=3.9e-14  Score=130.50  Aligned_cols=237  Identities=17%  Similarity=0.140  Sum_probs=151.9

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL   81 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l   81 (361)
                      ++++.+++ +++++|.++  ..++++|++       ..+.|+.++                    ...+.++++|++|++
T Consensus        12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~L-------s~N~i~~i~--------------------~~~f~~l~~L~~L~L   61 (350)
T 4ay9_X           12 RVFLCQES-KVTEIPSDL--PRNAIELRF-------VLTKLRVIQ--------------------KGAFSGFGDLEKIEI   61 (350)
T ss_dssp             TEEEEEST-TCCSCCTTC--CTTCSEEEE-------ESCCCSEEC--------------------TTSSTTCTTCCEEEE
T ss_pred             CEEEecCC-CCCccCcCc--CCCCCEEEc-------cCCcCCCcC--------------------HHHHcCCCCCCEEEC
Confidence            34566666 788999877  367899998       555555543                    013678889999999


Q ss_pred             EecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEE-ecccCCCCC-chhhhcCccCCeeee
Q 018079           82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELW-IIFYGGNIF-PKWLTSLANLRELNL  158 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~-l~~~~~~~~-p~~~~~l~~L~~L~l  158 (361)
                      +.|....                              .+ ..++..+++++++. ..++....+ |..+..+++|+.|++
T Consensus        62 s~N~i~~------------------------------~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l  111 (350)
T 4ay9_X           62 SQNDVLE------------------------------VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI  111 (350)
T ss_dssp             ECCTTCC------------------------------EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE
T ss_pred             cCCCCCC------------------------------ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc
Confidence            9887422                              01 12345666666543 444554444 445567788888888


Q ss_pred             cCCCCCCCCCCCC--CCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhh
Q 018079          159 SLCFNCEHLPQLG--KLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY  235 (361)
Q Consensus       159 ~~~~~~~~l~~l~--~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~  235 (361)
                      +++ .+..++...  ... +..+++.++..+..++...+..                  ....++.|++++ ..++.++.
T Consensus       112 ~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~------------------~~~~l~~L~L~~-N~i~~i~~  171 (350)
T 4ay9_X          112 SNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG------------------LSFESVILWLNK-NGIQEIHN  171 (350)
T ss_dssp             EEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTT------------------SBSSCEEEECCS-SCCCEECT
T ss_pred             ccc-ccccCCchhhcccchhhhhhhccccccccccccchhh------------------cchhhhhhcccc-ccccCCCh
Confidence            775 555555532  233 6677776666677766543321                  123577777776 34555443


Q ss_pred             hhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCc
Q 018079          236 RITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKV  314 (361)
Q Consensus       236 ~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~  314 (361)
                            .+...++|+.+.+.+++.++.+|..+ ..+++|+.|+++++ .++.+|.      ..+.+|++|.+.+++.++.
T Consensus       172 ------~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~------~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          172 ------SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS------YGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             ------TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS------SSCTTCCEEECTTCTTCCC
T ss_pred             ------hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh------hhhccchHhhhccCCCcCc
Confidence                  23345677888887777777777653 56788888888874 5666653      3366777777777777888


Q ss_pred             cccccCCCCCCCeEEEeC
Q 018079          315 LPDCLLRTTTLQKLTIWG  332 (361)
Q Consensus       315 l~~~l~~l~~L~~L~l~~  332 (361)
                      +|. +..+++|+.+++.+
T Consensus       239 lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          239 LPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             CCC-TTTCCSCCEEECSC
T ss_pred             CCC-chhCcChhhCcCCC
Confidence            874 67778888887754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=2.3e-14  Score=128.53  Aligned_cols=199  Identities=22%  Similarity=0.231  Sum_probs=147.3

Q ss_pred             cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCC-chhhh
Q 018079           70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIF-PKWLT  148 (361)
Q Consensus        70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~~~  148 (361)
                      +.+++++++++++.+....                               ++..+  .+++++|+++++....+ +..+.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~-------------------------------ip~~~--~~~l~~L~L~~N~l~~~~~~~~~   52 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTA-------------------------------LPPDL--PKDTTILHLSENLLYTFSLATLM   52 (290)
T ss_dssp             EECSTTCCEEECTTSCCSS-------------------------------CCSCC--CTTCCEEECTTSCCSEEEGGGGT
T ss_pred             ccccCCccEEECCCCCCCc-------------------------------CCCCC--CCCCCEEEcCCCcCCccCHHHhh
Confidence            5677888888887765332                               22222  26789999998887664 45677


Q ss_pred             cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCC
Q 018079          149 SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGM  227 (361)
Q Consensus       149 ~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~  227 (361)
                      .+++|+.|+++++ .+..++..+.++ |+.|+++++ .++.++..                    +..+++|+.|+++++
T Consensus        53 ~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~--------------------~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           53 PYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHN-QLQSLPLL--------------------GQTLPALTVLDVSFN  110 (290)
T ss_dssp             TCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSS-CCSSCCCC--------------------TTTCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCC-ccCcccCCCCCCcCCEEECCCC-cCCcCchh--------------------hccCCCCCEEECCCC
Confidence            8899999999986 566666667788 999999874 45655542                    337889999999874


Q ss_pred             ccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEE
Q 018079          228 KELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRI  306 (361)
Q Consensus       228 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l  306 (361)
                       .++.++.     ..+..+++|+.|+++++ .++.+|... ..+++|+.|+++++ .++.+|.   -.+.++++|+.|++
T Consensus       111 -~l~~l~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~---~~~~~l~~L~~L~L  179 (290)
T 1p9a_G          111 -RLTSLPL-----GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA---GLLNGLENLDTLLL  179 (290)
T ss_dssp             -CCCCCCS-----STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT---TTTTTCTTCCEEEC
T ss_pred             -cCcccCH-----HHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH---HHhcCcCCCCEEEC
Confidence             5555442     34667899999999885 677777654 56899999999984 5666663   13456889999999


Q ss_pred             ecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          307 GYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       307 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      ++ +.++.+|.++..+++|+.++++++|.
T Consensus       180 ~~-N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          180 QE-NSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             CS-SCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CC-CcCCccChhhcccccCCeEEeCCCCc
Confidence            88 57789998888888999999998764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=6.6e-14  Score=125.57  Aligned_cols=191  Identities=18%  Similarity=0.134  Sum_probs=137.9

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLH   80 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~   80 (361)
                      +++++++++ .+..+|.++.  .++++|++       ..+.+..+.                    +..+.++++|+.|+
T Consensus        12 l~~l~~~~~-~l~~ip~~~~--~~l~~L~L-------~~N~l~~~~--------------------~~~~~~l~~L~~L~   61 (290)
T 1p9a_G           12 HLEVNCDKR-NLTALPPDLP--KDTTILHL-------SENLLYTFS--------------------LATLMPYTRLTQLN   61 (290)
T ss_dssp             CCEEECTTS-CCSSCCSCCC--TTCCEEEC-------TTSCCSEEE--------------------GGGGTTCTTCCEEE
T ss_pred             ccEEECCCC-CCCcCCCCCC--CCCCEEEc-------CCCcCCccC--------------------HHHhhcCCCCCEEE
Confidence            456777776 7777777664  56777777       444444332                    12367788899999


Q ss_pred             EEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecC
Q 018079           81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSL  160 (361)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~  160 (361)
                      ++.|....                               + .....+++|++|+++++....+|..+..+++|+.|++++
T Consensus        62 L~~n~l~~-------------------------------~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           62 LDRAELTK-------------------------------L-QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             CTTSCCCE-------------------------------E-ECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCCccCc-------------------------------c-cCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence            88876432                               1 112567889999999988878888788889999999998


Q ss_pred             CCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079          161 CFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI  237 (361)
Q Consensus       161 ~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~  237 (361)
                      + .+..++.  +..++ |+.|+++++ .++.++...                   +..+++|+.|+++++ .+..++.  
T Consensus       110 N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------------------~~~l~~L~~L~L~~N-~l~~l~~--  165 (290)
T 1p9a_G          110 N-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGL-------------------LTPTPKLEKLSLANN-NLTELPA--  165 (290)
T ss_dssp             S-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT-------------------TTTCTTCCEEECTTS-CCSCCCT--
T ss_pred             C-cCcccCHHHHcCCCCCCEEECCCC-CCCccChhh-------------------cccccCCCEEECCCC-cCCccCH--
Confidence            6 5666654  77888 999999874 466665443                   336789999999874 5655543  


Q ss_pred             ccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079          238 TRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       238 ~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                         ..+..+++|+.|+++++ .++.+|..+..+++|+.+++++.
T Consensus       166 ---~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          166 ---GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             ---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             ---HHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence               34457889999999884 68888888888888999998874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=9.9e-16  Score=150.86  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=72.9

Q ss_pred             CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEe-----cCCCCCccch------hccCCCCcceEeeccCCCc
Q 018079          216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVS-----SCNKLKALPD------YLLQMTVLQNLRIFFCENM  284 (361)
Q Consensus       216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~-----~c~~l~~l~~------~~~~l~~L~~L~l~~c~~l  284 (361)
                      +++|++|.+ +|..++....    ......+++|+.|++.     +|+.++..|.      .+..+++|+.|++++  .+
T Consensus       371 ~~~L~~L~~-~~~~l~~~~~----~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l  443 (594)
T 2p1m_B          371 CPKLESVLY-FCRQMTNAAL----ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LL  443 (594)
T ss_dssp             CTTCCEEEE-EESCCCHHHH----HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SC
T ss_pred             chhHHHHHH-hcCCcCHHHH----HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cc
Confidence            556666643 2334433222    1122357888888888     5666764432      245578888888866  33


Q ss_pred             c---------cCCcccccccCC--------------CCCccEEEEecCCCCCcc-c-cccCCCCCCCeEEEeCCccc
Q 018079          285 E---------ELPILEDHRTTD--------------IPRLSSLRIGYCPKLKVL-P-DCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       285 ~---------~lp~L~~L~l~~--------------l~~L~~L~l~~c~~l~~l-~-~~l~~l~~L~~L~l~~c~~l  336 (361)
                      .         .+++|+.|++++              +++|++|++++|+. +.. . ..+..+++|+.|++++|+..
T Consensus       444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            2         166777777765              78999999999876 332 2 34566899999999999763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=1e-14  Score=140.42  Aligned_cols=225  Identities=12%  Similarity=0.033  Sum_probs=153.7

Q ss_pred             HHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc
Q 018079           65 AERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP  144 (361)
Q Consensus        65 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p  144 (361)
                      ........+++|+.|++++|.........+...++++.|++..+.       ..... .+..+++|++|++++|....+|
T Consensus        25 ~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------l~~~~-~l~~l~~L~~L~Ls~N~l~~l~   96 (487)
T 3oja_A           25 ALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-------LYETL-DLESLSTLRTLDLNNNYVQELL   96 (487)
T ss_dssp             HHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-------CEEEE-ECTTCTTCCEEECCSSEEEEEE
T ss_pred             HHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-------CCCCc-ccccCCCCCEEEecCCcCCCCC
Confidence            333334455688888888887766555566666677777776654       11111 2667778888888877654444


Q ss_pred             hhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEE
Q 018079          145 KWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLE  223 (361)
Q Consensus       145 ~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  223 (361)
                      .    .++|+.|++++| .+..++. ..++ |+.|+++++. +..++...                   ++.+++|+.|+
T Consensus        97 ~----~~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~-------------------~~~l~~L~~L~  150 (487)
T 3oja_A           97 V----GPSIETLHAANN-NISRVSC-SRGQGKKNIYLANNK-ITMLRDLD-------------------EGCRSRVQYLD  150 (487)
T ss_dssp             E----CTTCCEEECCSS-CCCCEEE-CCCSSCEEEECCSSC-CCSGGGBC-------------------GGGGSSEEEEE
T ss_pred             C----CCCcCEEECcCC-cCCCCCc-cccCCCCEEECCCCC-CCCCCchh-------------------hcCCCCCCEEE
Confidence            2    377888888876 4444433 3467 8888888643 44443322                   44788999999


Q ss_pred             EcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccE
Q 018079          224 IDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSS  303 (361)
Q Consensus       224 L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~  303 (361)
                      ++++ .+.....    ......+++|+.|+++++ .++.++.. ..+++|+.|+++++ .+..+|.    .+..+++|+.
T Consensus       151 Ls~N-~l~~~~~----~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N-~l~~~~~----~~~~l~~L~~  218 (487)
T 3oja_A          151 LKLN-EIDTVNF----AELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTW  218 (487)
T ss_dssp             CTTS-CCCEEEG----GGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSS-CCCEECG----GGGGGTTCSE
T ss_pred             CCCC-CCCCcCh----HHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCC-CCCCCCH----hHcCCCCccE
Confidence            9885 4443332    112236889999999885 57666543 35889999999985 5566654    4667899999


Q ss_pred             EEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          304 LRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       304 L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      |++++ +.++.+|..+..+++|+.+++++|+..
T Consensus       219 L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          219 ISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             EECTT-SCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred             EEecC-CcCcccchhhccCCCCCEEEcCCCCCc
Confidence            99998 467789988999999999999998765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.53  E-value=8.9e-16  Score=146.54  Aligned_cols=116  Identities=20%  Similarity=0.187  Sum_probs=60.4

Q ss_pred             CCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCc-----cchhccCCCCcceEeeccCCCccc--
Q 018079          215 AFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKA-----LPDYLLQMTVLQNLRIFFCENMEE--  286 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~--  286 (361)
                      .+++|++|+++++ .+.+... .+. ......+++|+.|++++| .++.     ++..+..+++|++|+++++. +..  
T Consensus       225 ~~~~L~~L~Ls~n-~l~~~~~~~l~-~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~  300 (461)
T 1z7x_W          225 SKASLRELALGSN-KLGDVGMAELC-PGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEG  300 (461)
T ss_dssp             HCTTCCEEECCSS-BCHHHHHHHHH-HHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHH
T ss_pred             hCCCccEEeccCC-cCChHHHHHHH-HHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHH
Confidence            4566666666664 2332211 000 011123566666666665 3443     44444556666666666542 211  


Q ss_pred             -----------CCcccccccCC-----------------CCCccEEEEecCCCCCcc-c----cccCC-CCCCCeEEEeC
Q 018079          287 -----------LPILEDHRTTD-----------------IPRLSSLRIGYCPKLKVL-P----DCLLR-TTTLQKLTIWG  332 (361)
Q Consensus       287 -----------lp~L~~L~l~~-----------------l~~L~~L~l~~c~~l~~l-~----~~l~~-l~~L~~L~l~~  332 (361)
                                 .++|+.|++++                 +++|++|++++| .++.. +    ..+.. .++|++|++++
T Consensus       301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~  379 (461)
T 1z7x_W          301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLAD  379 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCC
Confidence                       13444444443                 578888888876 44432 1    22322 57888888888


Q ss_pred             Ccc
Q 018079          333 CPL  335 (361)
Q Consensus       333 c~~  335 (361)
                      |.-
T Consensus       380 n~i  382 (461)
T 1z7x_W          380 CDV  382 (461)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            853

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=2.1e-13  Score=120.93  Aligned_cols=174  Identities=21%  Similarity=0.294  Sum_probs=132.8

Q ss_pred             CCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG  203 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  203 (361)
                      +++++|+++++....++. .+..+++|+.|+++++ .+..++.  +..++ |++|+++++. +..++...          
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~----------  104 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNK-LQALPIGV----------  104 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTT----------
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhH----------
Confidence            579999999988777664 5678999999999986 5666665  57788 9999998743 56655433          


Q ss_pred             CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCC
Q 018079          204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCE  282 (361)
Q Consensus       204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~  282 (361)
                               +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.. +..+++|++|+++++ 
T Consensus       105 ---------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-  167 (270)
T 2o6q_A          105 ---------FDQLVNLAELRLDRN-QLKSLPP-----RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNN-  167 (270)
T ss_dssp             ---------TTTCSSCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             ---------cccccCCCEEECCCC-ccCeeCH-----HHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCC-
Confidence                     347899999999884 4554443     34568899999999985 67777765 567999999999985 


Q ss_pred             CcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079          283 NMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       283 ~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~  334 (361)
                      .++.++.   -.+.++++|+.|+++++ .++.+| ..+..+++|+.|+++++|
T Consensus       168 ~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          168 QLKRVPE---GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCcEeCh---hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            4555542   13566889999999986 677777 457889999999998886

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.51  E-value=1.8e-15  Score=149.03  Aligned_cols=306  Identities=16%  Similarity=0.117  Sum_probs=153.3

Q ss_pred             CceeecCCCCcccc--cCccCCCccccceecceeeecCC-CCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCC
Q 018079            1 MRSLLNFGTNSLKY--MPIGISKLTSLRRLDKFVVGGGV-DGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSN   72 (361)
Q Consensus         1 L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~-~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~   72 (361)
                      |++|++++|..+..  ++.-+..+++|++|++..+...+ ....+..+.     |+ .+.+..... ..........+.+
T Consensus       132 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~-~L~l~~~~~-~~~~~~l~~l~~~  209 (594)
T 2p1m_B          132 FKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV-SLNISCLAS-EVSFSALERLVTR  209 (594)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC-EEECTTCCS-CCCHHHHHHHHHH
T ss_pred             CcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc-EEEecccCC-cCCHHHHHHHHHh
Confidence            57778877744443  44434467778888886544221 111122111     33 444443320 0111223333445


Q ss_pred             CCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEE-EecccCCCCCchhhhcCc
Q 018079           73 KKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEEL-WIIFYGGNIFPKWLTSLA  151 (361)
Q Consensus        73 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~p~~~~~l~  151 (361)
                      +++|+.|+++.+.........+....+++.+++.....--.......+...+..+++|+.+ .+.+.....++..+..++
T Consensus       210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~  289 (594)
T 2p1m_B          210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCS  289 (594)
T ss_dssp             CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHT
T ss_pred             CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhC
Confidence            6777777777652211111122333445555533211100011134455566777777777 333333333555555677


Q ss_pred             cCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcC-
Q 018079          152 NLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDG-  226 (361)
Q Consensus       152 ~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~-  226 (361)
                      +|+.|++++|. +..  +.. +..++ |+.|++++|.  ........                  ...+++|++|++.+ 
T Consensus       290 ~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~--~~~~l~~l------------------~~~~~~L~~L~L~~~  348 (594)
T 2p1m_B          290 RLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYI--EDAGLEVL------------------ASTCKDLRELRVFPS  348 (594)
T ss_dssp             TCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGG--HHHHHHHH------------------HHHCTTCCEEEEECS
T ss_pred             CCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCcc--CHHHHHHH------------------HHhCCCCCEEEEecC
Confidence            78888877765 432  111 44667 7777777652  21111111                  11467777777733 


Q ss_pred             -------CccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhc-cCCCCcceEeec-----cCCCcc-------
Q 018079          227 -------MKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYL-LQMTVLQNLRIF-----FCENME-------  285 (361)
Q Consensus       227 -------~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~-~~l~~L~~L~l~-----~c~~l~-------  285 (361)
                             +..+.+...    ......+++|+.|.+ +|+.++.. ...+ ..+++|+.|+++     +|..++       
T Consensus       349 ~~~g~~~~~~l~~~~l----~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~  423 (594)
T 2p1m_B          349 EPFVMEPNVALTEQGL----VSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIG  423 (594)
T ss_dssp             CTTCSSCSSCCCHHHH----HHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHH
T ss_pred             cccccccCCCCCHHHH----HHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhH
Confidence                   333433222    112224677777754 34455432 1122 236777777777     455554       


Q ss_pred             ------cCCcccccccCC-------------CCCccEEEEecCCCCCc-ccccc-CCCCCCCeEEEeCCcc
Q 018079          286 ------ELPILEDHRTTD-------------IPRLSSLRIGYCPKLKV-LPDCL-LRTTTLQKLTIWGCPL  335 (361)
Q Consensus       286 ------~lp~L~~L~l~~-------------l~~L~~L~l~~c~~l~~-l~~~l-~~l~~L~~L~l~~c~~  335 (361)
                            .+++|+.|++++             +++|+.|++++|. ++. ....+ ..+++|+.|++++|+.
T Consensus       424 ~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          424 FGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             HHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence                  245677776654             6677777777764 322 12222 4567777777777764

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.50  E-value=1.8e-15  Score=141.37  Aligned_cols=260  Identities=15%  Similarity=0.094  Sum_probs=164.5

Q ss_pred             cccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCCC
Q 018079           11 SLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDW   90 (361)
Q Consensus        11 ~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~   90 (361)
                      .+..++..+..+++|++|++       ..+.+...                ....+...+.++++|+.|+++.+......
T Consensus        20 ~~~~l~~~l~~~~~L~~L~L-------~~n~i~~~----------------~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~   76 (386)
T 2ca6_A           20 DEKSVFAVLLEDDSVKEIVL-------SGNTIGTE----------------AARWLSENIASKKDLEIAEFSDIFTGRVK   76 (386)
T ss_dssp             HHHTTSHHHHHCSCCCEEEC-------TTSEECHH----------------HHHHHHHTTTTCTTCCEEECCSCCTTSCG
T ss_pred             HHHHHHHHHhcCCCccEEEC-------CCCCCCHH----------------HHHHHHHHHHhCCCccEEeCcccccCccc
Confidence            34455666667777777777       33322221                11223345778889999999876432100


Q ss_pred             cchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-----CchhhhcCccCCeeeecCCCCCC
Q 018079           91 RNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-----FPKWLTSLANLRELNLSLCFNCE  165 (361)
Q Consensus        91 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~  165 (361)
                      .   ...                 .....+..++..+++|++|++++|....     +|.++..+++|++|++++|. +.
T Consensus        77 ~---~~~-----------------~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~  135 (386)
T 2ca6_A           77 D---EIP-----------------EALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LG  135 (386)
T ss_dssp             G---GSH-----------------HHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CH
T ss_pred             c---chh-----------------HHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CC
Confidence            0   000                 0144556677888999999999887655     56677889999999999873 33


Q ss_pred             C-----CCC-CCCC---------c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079          166 H-----LPQ-LGKL---------P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE  229 (361)
Q Consensus       166 ~-----l~~-l~~l---------~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  229 (361)
                      .     ++. +..+         + |++|+++++. +..........               .+..+++|++|+++++ .
T Consensus       136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~---------------~l~~~~~L~~L~L~~n-~  198 (386)
T 2ca6_A          136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK---------------TFQSHRLLHTVKMVQN-G  198 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH---------------HHHHCTTCCEEECCSS-C
T ss_pred             HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH---------------HHHhCCCcCEEECcCC-C
Confidence            1     111 2233         8 9999998754 33111110000               0447889999999986 3


Q ss_pred             chhhhhhhccccccccCCCccEEEEecCCCC-----CccchhccCCCCcceEeeccCCCccc-----CCcccccccCCCC
Q 018079          230 LEEWNYRITRKENISIMPRLSSLEVSSCNKL-----KALPDYLLQMTVLQNLRIFFCENMEE-----LPILEDHRTTDIP  299 (361)
Q Consensus       230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l-----~~l~~~~~~l~~L~~L~l~~c~~l~~-----lp~L~~L~l~~l~  299 (361)
                      +.......-....+..+++|+.|++++|. +     ..+|..+..+++|++|++++|. +..     ++.  .+..+.++
T Consensus       199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~--~l~~~~~~  274 (386)
T 2ca6_A          199 IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVD--AFSKLENI  274 (386)
T ss_dssp             CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHH--HHHTCSSC
T ss_pred             CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHH--HHhhccCC
Confidence            44211000001255678999999999864 5     5577778889999999999874 332     121  11224478


Q ss_pred             CccEEEEecCCCCCc-----ccccc-CCCCCCCeEEEeCCccc
Q 018079          300 RLSSLRIGYCPKLKV-----LPDCL-LRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       300 ~L~~L~l~~c~~l~~-----l~~~l-~~l~~L~~L~l~~c~~l  336 (361)
                      +|+.|++++|. ++.     +|..+ .++++|+.|++++|+--
T Consensus       275 ~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          275 GLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            99999999864 454     88666 66899999999998643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.50  E-value=1e-13  Score=123.23  Aligned_cols=179  Identities=21%  Similarity=0.204  Sum_probs=120.3

Q ss_pred             hcCCCCCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCC
Q 018079          123 ALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE  198 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~  198 (361)
                      .+..+++|++|+++++....++. .+..+++|+.|+++++ .+..++.  +..++ |+.|+++++. +..++...     
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~-----  119 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFP-----  119 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCC-----
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECCCCC-ccccCchh-----
Confidence            56677888888888887666443 5667888888888886 4554442  77788 8888888643 44443321     


Q ss_pred             CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcc---
Q 018079          199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQ---  274 (361)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~---  274 (361)
                                    +..+++|++|+++++ .+..+..    ...+..+++|+.|+++++ .++.++. .+..+++|+   
T Consensus       120 --------------~~~l~~L~~L~l~~n-~l~~~~l----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~  179 (276)
T 2z62_A          120 --------------IGHLKTLKELNVAHN-LIQSFKL----PEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLN  179 (276)
T ss_dssp             --------------CTTCTTCCEEECCSS-CCCCCCC----CGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCC
T ss_pred             --------------cccCCCCCEEECcCC-ccceecC----chhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccc
Confidence                          447888999988874 3443221    235567888999998885 5665543 444455555   


Q ss_pred             -eEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCc
Q 018079          275 -NLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       275 -~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~  334 (361)
                       +|+++++ .++.++.    ......+|+.|+++++ .++.+|. .+..+++|+.|++++++
T Consensus       180 l~L~ls~n-~l~~~~~----~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          180 LSLDLSLN-PMNFIQP----GAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             EEEECCSS-CCCEECT----TSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             eeeecCCC-cccccCc----cccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence             7777774 4444442    2222458999999985 5778774 56889999999999543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.49  E-value=3.4e-13  Score=132.94  Aligned_cols=239  Identities=19%  Similarity=0.127  Sum_probs=163.1

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLH   80 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~   80 (361)
                      |++|++++| .+..+|.   .+++|++|++.++....-...+..  |+ .+.+.+.. +..+       -..+++|+.|+
T Consensus        63 L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~~l~~--L~-~L~Ls~N~-l~~l-------~~~l~~L~~L~  127 (622)
T 3g06_A           63 ITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPVLPPG--LL-ELSIFSNP-LTHL-------PALPSGLCKLW  127 (622)
T ss_dssp             CSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCCCCTT--CC-EEEECSCC-CCCC-------CCCCTTCCEEE
T ss_pred             CcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCCCCCC--CC-EEECcCCc-CCCC-------CCCCCCcCEEE
Confidence            688999999 8889987   578899999954443310111111  33 44443311 1111       11467888999


Q ss_pred             EEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecC
Q 018079           81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSL  160 (361)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~  160 (361)
                      ++.|.....+.    ..++++.|++..+.       ...++   ..+++|+.|++.+|....+|   ..+++|+.|++++
T Consensus       128 L~~N~l~~lp~----~l~~L~~L~Ls~N~-------l~~l~---~~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~  190 (622)
T 3g06_A          128 IFGNQLTSLPV----LPPGLQELSVSDNQ-------LASLP---ALPSELCKLWAYNNQLTSLP---MLPSGLQELSVSD  190 (622)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSC-------CSCCC---CCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred             CCCCCCCcCCC----CCCCCCEEECcCCc-------CCCcC---CccCCCCEEECCCCCCCCCc---ccCCCCcEEECCC
Confidence            88887654332    23678888887664       22111   23468999999999887787   4578999999998


Q ss_pred             CCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhcc
Q 018079          161 CFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITR  239 (361)
Q Consensus       161 ~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~  239 (361)
                      | .+..+|.  .++ |+.|+++++. ++.++.                       .+++|++|+++++ .+..++.    
T Consensus       191 N-~l~~l~~--~~~~L~~L~L~~N~-l~~l~~-----------------------~~~~L~~L~Ls~N-~L~~lp~----  238 (622)
T 3g06_A          191 N-QLASLPT--LPSELYKLWAYNNR-LTSLPA-----------------------LPSGLKELIVSGN-RLTSLPV----  238 (622)
T ss_dssp             S-CCSCCCC--CCTTCCEEECCSSC-CSSCCC-----------------------CCTTCCEEECCSS-CCSCCCC----
T ss_pred             C-CCCCCCC--ccchhhEEECcCCc-ccccCC-----------------------CCCCCCEEEccCC-ccCcCCC----
Confidence            6 5666664  246 9999998753 554442                       4578999999875 5555433    


Q ss_pred             ccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcccc
Q 018079          240 KENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPD  317 (361)
Q Consensus       240 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~  317 (361)
                           .+++|+.|+++++ .++.+|.   .+++|+.|++++| .++.+|.    .+.++++|+.|++++|+.....|.
T Consensus       239 -----~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~----~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          239 -----LPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPE----SLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             -----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCG----GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             -----CCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCH----HHhhccccCEEEecCCCCCCcCHH
Confidence                 6788999999885 6778876   5788999999985 6667775    567789999999998765444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.48  E-value=4.4e-13  Score=118.83  Aligned_cols=57  Identities=30%  Similarity=0.394  Sum_probs=25.7

Q ss_pred             CCCCCccEEEecccCCCCCch-hhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079          125 QPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN  182 (361)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~  182 (361)
                      ..+++|++|+++++....+|. .+..+++|+.|+++++ .+..++.  +..++ |+.|++++
T Consensus        82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~  142 (270)
T 2o6q_A           82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGY  142 (270)
T ss_dssp             SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCC
Confidence            344555555555554444332 2234455555555543 2333332  34444 55555544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.48  E-value=2.2e-13  Score=125.46  Aligned_cols=216  Identities=19%  Similarity=0.195  Sum_probs=140.7

Q ss_pred             CceeecCCCCcccccCcc-CCCccccceecceeeecCCCCCcccc-cceeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            1 MRSLLNFGTNSLKYMPIG-ISKLTSLRRLDKFVVGGGVDGSNTGR-LQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~~~l~~-L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      +++|++++| .++.+|++ +.++++|++|++.       .+.+.+ ++                    ...+.+++++++
T Consensus        32 l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls-------~N~i~~~i~--------------------~~~f~~L~~l~~   83 (350)
T 4ay9_X           32 AIELRFVLT-KLRVIQKGAFSGFGDLEKIEIS-------QNDVLEVIE--------------------ADVFSNLPKLHE   83 (350)
T ss_dssp             CSEEEEESC-CCSEECTTSSTTCTTCCEEEEE-------CCTTCCEEC--------------------TTSBCSCTTCCE
T ss_pred             CCEEEccCC-cCCCcCHHHHcCCCCCCEEECc-------CCCCCCccC--------------------hhHhhcchhhhh
Confidence            578999999 99999975 8999999999994       333321 11                    012456666665


Q ss_pred             EEE-EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh-hcCccCCee
Q 018079           79 LHL-QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TSLANLREL  156 (361)
Q Consensus        79 L~l-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L  156 (361)
                      +.+ ..|....                              -.++.+..+++|++|++.++....+|... ....++..+
T Consensus        84 ~l~~~~N~l~~------------------------------l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l  133 (350)
T 4ay9_X           84 IRIEKANNLLY------------------------------INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  133 (350)
T ss_dssp             EEEEEETTCCE------------------------------ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred             hhcccCCcccc------------------------------cCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence            433 3444221                              01345667778888888887766655432 244566677


Q ss_pred             eecCCCCCCCCCC--CCCCc--cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchh
Q 018079          157 NLSLCFNCEHLPQ--LGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEE  232 (361)
Q Consensus       157 ~l~~~~~~~~l~~--l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~  232 (361)
                      ++.++..+..++.  +..++  ++.|++++ +.++.++..++                    ...+|+.+.+.++..++.
T Consensus       134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f--------------------~~~~L~~l~l~~~n~l~~  192 (350)
T 4ay9_X          134 DIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAF--------------------NGTQLDELNLSDNNNLEE  192 (350)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSS--------------------TTEEEEEEECTTCTTCCC
T ss_pred             hhccccccccccccchhhcchhhhhhcccc-ccccCCChhhc--------------------cccchhHHhhccCCcccC
Confidence            7777666665554  45554  77788875 45677665543                    345778888877667776


Q ss_pred             hhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEec
Q 018079          233 WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGY  308 (361)
Q Consensus       233 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~  308 (361)
                      ++.     ..+..+++|+.|+++++ +++.+|..  .+.+|+.|.+.++..++.+|.     +.++++|+.+++.+
T Consensus       193 i~~-----~~f~~l~~L~~LdLs~N-~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-----l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          193 LPN-----DVFHGASGPVILDISRT-RIHSLPSY--GLENLKKLRARSTYNLKKLPT-----LEKLVALMEASLTY  255 (350)
T ss_dssp             CCT-----TTTTTEECCSEEECTTS-CCCCCCSS--SCTTCCEEECTTCTTCCCCCC-----TTTCCSCCEEECSC
T ss_pred             CCH-----HHhccCcccchhhcCCC-CcCccChh--hhccchHhhhccCCCcCcCCC-----chhCcChhhCcCCC
Confidence            654     34567788888888774 67777753  256777777777777777774     44567777777643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.48  E-value=8.1e-13  Score=117.24  Aligned_cols=176  Identities=20%  Similarity=0.243  Sum_probs=128.5

Q ss_pred             CCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCC
Q 018079          126 PPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGP  204 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  204 (361)
                      .+++|+.|++.++....++ .+..+++|+.|+++++ .+..++.+..++ |++|+++++ .++.++...           
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~-----------  104 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILTGN-QLQSLPNGV-----------  104 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECTTS-CCCCCCTTT-----------
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECCCC-ccCccChhH-----------
Confidence            3467889999888765554 4678899999999986 466666688888 999999875 356555433           


Q ss_pred             CCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCC
Q 018079          205 SSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCEN  283 (361)
Q Consensus       205 ~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~  283 (361)
                              +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.. +..+++|+.|++++| .
T Consensus       105 --------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~  168 (272)
T 3rfs_A          105 --------FDKLTNLKELVLVEN-QLQSLPD-----GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-Q  168 (272)
T ss_dssp             --------TTTCTTCCEEECTTS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             --------hcCCcCCCEEECCCC-cCCccCH-----HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-C
Confidence                    347889999999885 4444433     23567889999999886 67777654 467899999999986 4


Q ss_pred             cccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079          284 MEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       284 l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~  335 (361)
                      ++.++.   -.++++++|+.|++++| .++.++ ..+..+++|+.|++++|+.
T Consensus       169 l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          169 LQSLPE---GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cCccCH---HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc
Confidence            555442   13466889999999886 455655 5578889999999988753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.48  E-value=2.6e-14  Score=129.59  Aligned_cols=183  Identities=20%  Similarity=0.180  Sum_probs=128.9

Q ss_pred             CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc-hhhhc
Q 018079           71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTS  149 (361)
Q Consensus        71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~  149 (361)
                      .++++|++|+++.|.....+ ..                       ...+..  ..+++|++|+++++....++ ..++.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~-~~-----------------------~~~l~~--~~~~~L~~L~L~~N~l~~~~~~~~~~  171 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRD-AW-----------------------LAELQQ--WLKPGLKVLSIAQAHSLNFSCEQVRV  171 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSS-SH-----------------------HHHHHT--TCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred             hcCCCccEEEccCCCCcchh-HH-----------------------HHHHHH--hhcCCCcEEEeeCCCCccchHHHhcc
Confidence            78999999999998764310 00                       111111  12489999999999887755 67789


Q ss_pred             CccCCeeeecCCCCCCC--CC-CC--CCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEE
Q 018079          150 LANLRELNLSLCFNCEH--LP-QL--GKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLE  223 (361)
Q Consensus       150 l~~L~~L~l~~~~~~~~--l~-~l--~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  223 (361)
                      +++|+.|+++++.-.+.  ++ .+  +.++ |+.|+++++. ++.++......                +..+++|++|+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~----------------~~~l~~L~~L~  234 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSAL----------------AAARVQLQGLD  234 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHH----------------HHTTCCCSEEE
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHH----------------HhcCCCCCEEE
Confidence            99999999999753332  22 23  7888 9999999854 55332211100                23679999999


Q ss_pred             EcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccE
Q 018079          224 IDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSS  303 (361)
Q Consensus       224 L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~  303 (361)
                      ++++ .+.....    ......+++|+.|+++++ .++.+|..+.  ++|++|+++++ .++.+|.     +..+++|+.
T Consensus       235 Ls~N-~l~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-----~~~l~~L~~  300 (312)
T 1wwl_A          235 LSHN-SLRDAAG----APSCDWPSQLNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNPS-----PDELPQVGN  300 (312)
T ss_dssp             CTTS-CCCSSCC----CSCCCCCTTCCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCCC-----TTTSCEEEE
T ss_pred             CCCC-cCCcccc----hhhhhhcCCCCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCChh-----HhhCCCCCE
Confidence            9985 4444321    123446799999999985 6788888776  89999999984 6777763     567899999


Q ss_pred             EEEecCC
Q 018079          304 LRIGYCP  310 (361)
Q Consensus       304 L~l~~c~  310 (361)
                      |++++++
T Consensus       301 L~L~~N~  307 (312)
T 1wwl_A          301 LSLKGNP  307 (312)
T ss_dssp             EECTTCT
T ss_pred             EeccCCC
Confidence            9999853

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.47  E-value=2e-13  Score=121.35  Aligned_cols=214  Identities=14%  Similarity=0.144  Sum_probs=150.3

Q ss_pred             eecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEe
Q 018079            4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF   83 (361)
Q Consensus         4 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~   83 (361)
                      .+..+. .+..+|..+.  .+|++|++       ..+.+..++                    ...+.++++|++|+++.
T Consensus        12 ~~c~~~-~l~~ip~~l~--~~l~~L~l-------s~n~l~~~~--------------------~~~~~~l~~L~~L~l~~   61 (276)
T 2z62_A           12 YQCMEL-NFYKIPDNLP--FSTKNLDL-------SFNPLRHLG--------------------SYSFFSFPELQVLDLSR   61 (276)
T ss_dssp             EECTTS-CCSSCCSSSC--TTCCEEEC-------TTCCCCEEC--------------------TTTTTTCTTCSEEECTT
T ss_pred             EEecCC-CccccCCCCC--CCccEEEC-------CCCcccccC--------------------HhHhccccCCcEEECCC
Confidence            344554 6778888765  57999999       555555442                    01367788999999998


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc-hhhhcCccCCeeeecCCC
Q 018079           84 GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTSLANLRELNLSLCF  162 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~  162 (361)
                      |....                              .....+..+++|++|+++++....++ ..+..+++|+.|+++++ 
T Consensus        62 n~l~~------------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-  110 (276)
T 2z62_A           62 CEIQT------------------------------IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-  110 (276)
T ss_dssp             CCCCE------------------------------ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-
T ss_pred             CcCCc------------------------------cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-
Confidence            86432                              01235677899999999998876644 56778999999999987 


Q ss_pred             CCCCCCC--CCCCc-cceEeccccccceee--cccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhh
Q 018079          163 NCEHLPQ--LGKLP-LEKLQLKNLKSVKRV--GNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRI  237 (361)
Q Consensus       163 ~~~~l~~--l~~l~-L~~L~l~~~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~  237 (361)
                      .+..++.  ++.++ |+.|+++++. +..+  +..                    +..+++|++|+++++ .++.++.  
T Consensus       111 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~--------------------~~~l~~L~~L~Ls~N-~l~~~~~--  166 (276)
T 2z62_A          111 NLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY--------------------FSNLTNLEHLDLSSN-KIQSIYC--  166 (276)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG--------------------GGGCTTCCEEECCSS-CCCEECG--
T ss_pred             CccccCchhcccCCCCCEEECcCCc-cceecCchh--------------------hccCCCCCEEECCCC-CCCcCCH--
Confidence            4555444  78889 9999999754 4442  222                    457899999999985 4444332  


Q ss_pred             ccccccccCCCcc----EEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCC
Q 018079          238 TRKENISIMPRLS----SLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       238 ~~~~~~~~l~~L~----~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                         ..+..+++|+    .|+++++ .++.++.......+|++|+++++ .++.+|.   -.+.++++|+.|++++++
T Consensus       167 ---~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~---~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          167 ---TDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPD---GIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             ---GGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCT---TTTTTCCSCCEEECCSSC
T ss_pred             ---HHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCH---hHhcccccccEEEccCCc
Confidence               1233344444    8888884 67788777777779999999986 4666663   134668999999999753

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.45  E-value=2.8e-13  Score=120.27  Aligned_cols=163  Identities=20%  Similarity=0.193  Sum_probs=93.3

Q ss_pred             hcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCC
Q 018079          123 ALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE  198 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~  198 (361)
                      .+..+++|++|++++|....++.. +..+++|+.|++++| .+..++.  ++.++ |+.|+++++ .++.++...     
T Consensus        80 ~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----  152 (272)
T 3rfs_A           80 ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGV-----  152 (272)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT-----
T ss_pred             hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCHHH-----
Confidence            456667777777777766554433 456777777777775 4444444  56667 777777764 345444332     


Q ss_pred             CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEe
Q 018079          199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLR  277 (361)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~  277 (361)
                                    +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.. +..+++|+.|+
T Consensus       153 --------------~~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          153 --------------FDKLTNLTELDLSYN-QLQSLPE-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             --------------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             --------------hccCccCCEEECCCC-CcCccCH-----HHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEE
Confidence                          235677777777764 3443332     23446677777777764 45555443 45577777777


Q ss_pred             eccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCC
Q 018079          278 IFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTT  324 (361)
Q Consensus       278 l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~  324 (361)
                      +++++-...           +++|+.++++.+.....+|.+++.++.
T Consensus       212 l~~N~~~~~-----------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          212 LHDNPWDCT-----------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             CCSSCBCCC-----------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             ccCCCcccc-----------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            776533322           334444444444333456655554443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.42  E-value=1.9e-12  Score=116.05  Aligned_cols=166  Identities=20%  Similarity=0.247  Sum_probs=109.6

Q ss_pred             CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      +++|++|++.++....++. +..+++|+.|++++| .+..++.+..++ |+.|+++++. ++.++.              
T Consensus        45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~--------------  107 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKDLSS--------------  107 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCGGG--------------
T ss_pred             cCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCCChh--------------
Confidence            4567777877776655643 567777888888775 455555567777 8888887643 444332              


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME  285 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  285 (361)
                             +..+++|++|+++++ .+..++       .+..+++|+.|+++++ .++.+ ..+..+++|+.|++++| .++
T Consensus       108 -------l~~l~~L~~L~L~~n-~i~~~~-------~l~~l~~L~~L~l~~n-~l~~~-~~l~~l~~L~~L~L~~N-~l~  169 (291)
T 1h6t_A          108 -------LKDLKKLKSLSLEHN-GISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QIS  169 (291)
T ss_dssp             -------GTTCTTCCEEECTTS-CCCCCG-------GGGGCTTCCEEECCSS-CCCCC-GGGGGCTTCSEEECCSS-CCC
T ss_pred             -------hccCCCCCEEECCCC-cCCCCh-------hhcCCCCCCEEEccCC-cCCcc-hhhccCCCCCEEEccCC-ccc
Confidence                   346777888887764 344332       2446777888888774 55555 35666777888888775 455


Q ss_pred             cCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          286 ELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       286 ~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      .++.     +..+++|+.|++++| .++.++. +..+++|+.|++++++
T Consensus       170 ~~~~-----l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          170 DIVP-----LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CCGG-----GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             cchh-----hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence            5442     556777788888774 5666664 6777788888877765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.42  E-value=8.1e-13  Score=111.41  Aligned_cols=149  Identities=15%  Similarity=0.249  Sum_probs=77.6

Q ss_pred             cCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCC
Q 018079          149 SLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGM  227 (361)
Q Consensus       149 ~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~  227 (361)
                      .+++|+.|+++++ .+..++.+..++ |++|++++| .++.++.                     +..+++|++|+++++
T Consensus        42 ~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~---------------------l~~l~~L~~L~l~~n   98 (197)
T 4ezg_A           42 QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNI-HATNYNP---------------------ISGLSNLERLRIMGK   98 (197)
T ss_dssp             HHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESC-CCSCCGG---------------------GTTCTTCCEEEEECT
T ss_pred             hcCCccEEeccCC-CccChHHHhcCCCCCEEEccCC-CCCcchh---------------------hhcCCCCCEEEeECC
Confidence            4455555555553 344444444555 555555544 2222211                     335556666666553


Q ss_pred             ccchhhhhhhccccccccCCCccEEEEecCCCCC-ccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEE
Q 018079          228 KELEEWNYRITRKENISIMPRLSSLEVSSCNKLK-ALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRI  306 (361)
Q Consensus       228 ~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l  306 (361)
                       .+....     ...+..+++|+.|+++++ .+. ..+..+..+++|++|++++|..++.+|     .+.++++|+.|++
T Consensus        99 -~l~~~~-----~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-----~l~~l~~L~~L~l  166 (197)
T 4ezg_A           99 -DVTSDK-----IPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-----PLKTLPELKSLNI  166 (197)
T ss_dssp             -TCBGGG-----SCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-----GGGGCSSCCEEEC
T ss_pred             -ccCccc-----ChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-----hhcCCCCCCEEEC
Confidence             222211     123445566666666654 233 244455556666666666655455554     2445666666666


Q ss_pred             ecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          307 GYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       307 ~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      ++| .++.++ .+..+++|+.|++++++
T Consensus       167 ~~n-~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          167 QFD-GVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             TTB-CCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CCC-CCcChH-HhccCCCCCEEEeeCcc
Confidence            664 455555 46667777777777664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.39  E-value=1.3e-12  Score=117.05  Aligned_cols=167  Identities=19%  Similarity=0.235  Sum_probs=129.9

Q ss_pred             CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcC
Q 018079           71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSL  150 (361)
Q Consensus        71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l  150 (361)
                      .++++|+.|+++++....                            .    +.+..+++|++|++++|....++. +..+
T Consensus        43 ~~l~~L~~L~l~~~~i~~----------------------------~----~~~~~l~~L~~L~L~~n~l~~~~~-l~~l   89 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKS----------------------------V----QGIQYLPNVTKLFLNGNKLTDIKP-LANL   89 (291)
T ss_dssp             HHHHTCCEEECTTSCCCC----------------------------C----TTGGGCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred             hhcCcccEEEccCCCccc----------------------------C----hhHhcCCCCCEEEccCCccCCCcc-cccC
Confidence            356788899988876543                            1    346678899999999998877776 7889


Q ss_pred             ccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079          151 ANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE  229 (361)
Q Consensus       151 ~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  229 (361)
                      ++|+.|+++++ .+..++.+..++ |+.|+++++. +..++.                     +..+++|+.|+++++ .
T Consensus        90 ~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~n~-i~~~~~---------------------l~~l~~L~~L~l~~n-~  145 (291)
T 1h6t_A           90 KNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG-ISDING---------------------LVHLPQLESLYLGNN-K  145 (291)
T ss_dssp             TTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC-CCCCGG---------------------GGGCTTCCEEECCSS-C
T ss_pred             CCCCEEECCCC-cCCCChhhccCCCCCEEECCCCc-CCCChh---------------------hcCCCCCCEEEccCC-c
Confidence            99999999996 577777788899 9999999754 555421                     457899999999985 4


Q ss_pred             chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079          230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                      +..+.       .+..+++|+.|+++++ .++.++. +..+++|+.|+++++ .++.++     .+..+++|+.|+++++
T Consensus       146 l~~~~-------~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~-----~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          146 ITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR-----ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CCCCG-------GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG-----GGTTCTTCSEEEEEEE
T ss_pred             CCcch-------hhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh-----hhccCCCCCEEECcCC
Confidence            44432       3557999999999986 6777765 778999999999985 666665     3567889999999985

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=9.2e-13  Score=119.16  Aligned_cols=179  Identities=17%  Similarity=0.185  Sum_probs=117.5

Q ss_pred             CCCCCccEEEecccCCCCC-c----hhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEecccccccee--eccccc
Q 018079          125 QPPLNVEELWIIFYGGNIF-P----KWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKR--VGNEFL  194 (361)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~-p----~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~--l~~~~~  194 (361)
                      ..+++|++|+++++..... +    ..+..+++|+.|++++| .+..++.  +..++ |++|+++++.-...  ++....
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  192 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC  192 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence            6678888888888776542 2    12236788888888886 4454443  67788 88888887642221  221111


Q ss_pred             ccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCC---
Q 018079          195 GIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQM---  270 (361)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l---  270 (361)
                                        +..+++|++|+++++ .++.++...  ...+..+++|++|+++++ .++.+ |..+..+   
T Consensus       193 ------------------~~~l~~L~~L~Ls~N-~l~~l~~~~--~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~  250 (310)
T 4glp_A          193 ------------------PHKFPAIQNLALRNT-GMETPTGVC--AALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWS  250 (310)
T ss_dssp             ------------------TTSSCCCCSCBCCSS-CCCCHHHHH--HHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCC
T ss_pred             ------------------hhcCCCCCEEECCCC-CCCchHHHH--HHHHhcCCCCCEEECCCC-CCCccchhhHHhccCc
Confidence                              236788888888875 444332200  012346788999999885 45554 6555554   


Q ss_pred             CCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          271 TVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       271 ~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      ++|++|+++++ .++.+|.    .+  +++|+.|++++| .++.+|. +..+++|+.|++++++-
T Consensus       251 ~~L~~L~Ls~N-~l~~lp~----~~--~~~L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          251 SALNSLNLSFA-GLEQVPK----GL--PAKLRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             TTCCCEECCSS-CCCSCCS----CC--CSCCSCEECCSC-CCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             CcCCEEECCCC-CCCchhh----hh--cCCCCEEECCCC-cCCCCch-hhhCCCccEEECcCCCC
Confidence            68899999874 5666664    22  378889999874 6677665 67788899999988764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.37  E-value=5.5e-12  Score=106.24  Aligned_cols=148  Identities=16%  Similarity=0.201  Sum_probs=116.3

Q ss_pred             CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      +++|++|+++++....+| .+..+++|+.|++++| .+..++.+..++ |++|+++++. ++......            
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~------------  107 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD-VTSDKIPN------------  107 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT-CBGGGSCC------------
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc-cCcccChh------------
Confidence            467999999999887777 6889999999999998 677777788999 9999999854 44322211            


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchh-hhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEE-WNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENM  284 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~-~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l  284 (361)
                             +..+++|++|+++++. +.. .+.      .+..+++|+.|++++|..++.++ .+..+++|+.|++++| .+
T Consensus       108 -------l~~l~~L~~L~Ls~n~-i~~~~~~------~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i  171 (197)
T 4ezg_A          108 -------LSGLTSLTLLDISHSA-HDDSILT------KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GV  171 (197)
T ss_dssp             -------CTTCTTCCEEECCSSB-CBGGGHH------HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CC
T ss_pred             -------hcCCCCCCEEEecCCc-cCcHhHH------HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CC
Confidence                   4588999999999864 443 222      45689999999999976588887 6788999999999986 45


Q ss_pred             ccCCcccccccCCCCCccEEEEecCC
Q 018079          285 EELPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       285 ~~lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                      +.++     .+..+++|+.|++++++
T Consensus       172 ~~~~-----~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          172 HDYR-----GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCCT-----TGGGCSSCCEEEECBC-
T ss_pred             cChH-----HhccCCCCCEEEeeCcc
Confidence            5555     45678999999999853

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.36  E-value=1.3e-11  Score=107.98  Aligned_cols=173  Identities=19%  Similarity=0.265  Sum_probs=120.0

Q ss_pred             CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGP  204 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  204 (361)
                      ...+++++.++....+|..+.  ++++.|+++++ .+..++.  +..++ |++|+++++ .++.++...           
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-----------   78 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV-----------   78 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT-----------
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhH-----------
Confidence            456778888777767776543  57888888886 4554443  67788 888888874 355544332           


Q ss_pred             CCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCC
Q 018079          205 SSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCEN  283 (361)
Q Consensus       205 ~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~  283 (361)
                              +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.. +..+++|++|+++++ .
T Consensus        79 --------~~~l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~  142 (251)
T 3m19_A           79 --------FDDLTELGTLGLANN-QLASLPL-----GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-Q  142 (251)
T ss_dssp             --------TTTCTTCCEEECTTS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             --------hccCCcCCEEECCCC-cccccCh-----hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-c
Confidence                    346788888888874 4554443     34557888888888874 67777665 466888888888875 5


Q ss_pred             cccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079          284 MEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       284 l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~  335 (361)
                      ++.+|.   -.++++++|+.|+++++ .++.++ ..+..+++|+.|++++++-
T Consensus       143 l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          143 LQSIPA---GAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             CCccCH---HHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence            555552   13556788888888884 566666 4677888888998888764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=1.6e-12  Score=127.84  Aligned_cols=148  Identities=22%  Similarity=0.273  Sum_probs=113.1

Q ss_pred             hcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCC
Q 018079          123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSE  201 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~  201 (361)
                      .+..+++|+.|++++|....++. +..+++|+.|++++| .+..++.+..++ |+.|+++++. +..++.          
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~----------  126 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHNG-ISDING----------  126 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEECTTSC-CCCCGG----------
T ss_pred             HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEecCCC-CCCCcc----------
Confidence            46678899999999988777766 778999999999987 667777788888 9999998754 454321          


Q ss_pred             CCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079          202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       202 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                                 +..+++|+.|+|+++ .+..+.       .+..+++|+.|++++| .+..++. +..+++|+.|++++|
T Consensus       127 -----------l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          127 -----------LVHLPQLESLYLGNN-KITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             -----------GGGCTTCSEEECCSS-CCCCCG-------GGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred             -----------ccCCCccCEEECCCC-ccCCch-------hhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCC
Confidence                       457899999999885 344432       3557899999999886 5666655 777899999999986


Q ss_pred             CCcccCCcccccccCCCCCccEEEEecCC
Q 018079          282 ENMEELPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       282 ~~l~~lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                       .+..+|     .+..+++|+.|++++|+
T Consensus       186 -~i~~l~-----~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          186 -HISDLR-----ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             -CCCBCG-----GGTTCTTCSEEECCSEE
T ss_pred             -CCCCCh-----HHccCCCCCEEEccCCc
Confidence             555555     45667888888888753

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.34  E-value=3.6e-13  Score=125.61  Aligned_cols=261  Identities=18%  Similarity=0.174  Sum_probs=159.9

Q ss_pred             CceeecCCCCcccc-----cCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCC
Q 018079            1 MRSLLNFGTNSLKY-----MPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKN   75 (361)
Q Consensus         1 L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~   75 (361)
                      |++|++++| .+..     ++..+.++++|++|++.       .+.+..+.   .       .+......+...+.++++
T Consensus        34 L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls-------~~~~~~l~---~-------~~~~~~~~l~~~l~~~~~   95 (386)
T 2ca6_A           34 VKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFS-------DIFTGRVK---D-------EIPEALRLLLQALLKCPK   95 (386)
T ss_dssp             CCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECC-------SCCTTSCG---G-------GSHHHHHHHHHHHTTCTT
T ss_pred             ccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCc-------ccccCccc---c-------chhHHHHHHHHHHhhCCc
Confidence            689999999 6654     44558889999999994       33333221   0       001112233455788999


Q ss_pred             CceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-----CchhhhcC
Q 018079           76 LLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-----FPKWLTSL  150 (361)
Q Consensus        76 L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~p~~~~~l  150 (361)
                      |++|+++.|.....                          ....++..+..+++|++|++++|....     ++..+..+
T Consensus        96 L~~L~Ls~n~l~~~--------------------------~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l  149 (386)
T 2ca6_A           96 LHTVRLSDNAFGPT--------------------------AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL  149 (386)
T ss_dssp             CCEEECCSCCCCTT--------------------------THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             ccEEECCCCcCCHH--------------------------HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH
Confidence            99999998875430                          033456677788899999999887532     23333344


Q ss_pred             ---------ccCCeeeecCCCCC-CCCCC----CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccC
Q 018079          151 ---------ANLRELNLSLCFNC-EHLPQ----LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIA  215 (361)
Q Consensus       151 ---------~~L~~L~l~~~~~~-~~l~~----l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  215 (361)
                               ++|+.|++++|.-. ..++.    +..++ |++|++++|. +...........              .+..
T Consensus       150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~g~~~l~~~--------------~l~~  214 (386)
T 2ca6_A          150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLE--------------GLAY  214 (386)
T ss_dssp             HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHT--------------TGGG
T ss_pred             hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC-CCHhHHHHHHHH--------------Hhhc
Confidence                     88999999887422 23332    44677 9999998763 332110000000              1457


Q ss_pred             CCCccEEEEcCCccch-----hhhhhhccccccccCCCccEEEEecCCCCCc-----cchhc--cCCCCcceEeeccCCC
Q 018079          216 FPKLKSLEIDGMKELE-----EWNYRITRKENISIMPRLSSLEVSSCNKLKA-----LPDYL--LQMTVLQNLRIFFCEN  283 (361)
Q Consensus       216 ~~~L~~L~L~~~~~l~-----~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~--~~l~~L~~L~l~~c~~  283 (361)
                      +++|++|+++++. +.     .++      ..+..+++|+.|++++|. ++.     ++..+  ..+++|++|++++|. 
T Consensus       215 ~~~L~~L~Ls~n~-l~~~g~~~l~------~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-  285 (386)
T 2ca6_A          215 CQELKVLDLQDNT-FTHLGSSALA------IALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-  285 (386)
T ss_dssp             CTTCCEEECCSSC-CHHHHHHHHH------HHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-
T ss_pred             CCCccEEECcCCC-CCcHHHHHHH------HHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-
Confidence            8899999998864 42     222      245678899999998864 543     34555  338899999999863 


Q ss_pred             ccc-----CCccccccc-CCCCCccEEEEecCCCCCccc--ccc-CCCCCCCeEEEeCC
Q 018079          284 MEE-----LPILEDHRT-TDIPRLSSLRIGYCPKLKVLP--DCL-LRTTTLQKLTIWGC  333 (361)
Q Consensus       284 l~~-----lp~L~~L~l-~~l~~L~~L~l~~c~~l~~l~--~~l-~~l~~L~~L~l~~c  333 (361)
                      +..     +|.    .+ .++++|+.|++++|+.-...+  ..+ ..++.++.+.+...
T Consensus       286 i~~~g~~~l~~----~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~  340 (386)
T 2ca6_A          286 IELDAVRTLKT----VIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL  340 (386)
T ss_dssp             CBHHHHHHHHH----HHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred             CCHHHHHHHHH----HHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence            333     443    23 347889999998865433332  111 23345554555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.33  E-value=1.4e-12  Score=118.04  Aligned_cols=184  Identities=18%  Similarity=0.138  Sum_probs=120.1

Q ss_pred             CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc-hhhhc
Q 018079           71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP-KWLTS  149 (361)
Q Consensus        71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~  149 (361)
                      .++++|++|+++.|......                          .......+..+++|++|++++|....++ ..+..
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~--------------------------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGR--------------------------SWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTT--------------------------SSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             ccCCCCCEEEeecccccchh--------------------------hhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            56778889999888753200                          0001123447788999999988876644 56668


Q ss_pred             CccCCeeeecCCCCCCC--CC---CCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEE
Q 018079          150 LANLRELNLSLCFNCEH--LP---QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLE  223 (361)
Q Consensus       150 l~~L~~L~l~~~~~~~~--l~---~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  223 (361)
                      +++|+.|++++|.-...  ++   .++.++ |++|+++++. ++.++......                ++.+++|++|+
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l----------------~~~l~~L~~L~  230 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAAL----------------AAAGVQPHSLD  230 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHH----------------HHHTCCCSSEE
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHH----------------HhcCCCCCEEE
Confidence            88999999998743221  22   146788 9999998754 55444321100                23678999999


Q ss_pred             EcCCccchhh-hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCcc
Q 018079          224 IDGMKELEEW-NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLS  302 (361)
Q Consensus       224 L~~~~~l~~~-~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~  302 (361)
                      ++++ .+... +..   ......+++|+.|+++++ .++.+|..+.  ++|++|+++++ .++.+|.     ...+++|+
T Consensus       231 Ls~N-~l~~~~p~~---~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~L~~L~Ls~N-~l~~~~~-----~~~l~~L~  297 (310)
T 4glp_A          231 LSHN-SLRATVNPS---APRCMWSSALNSLNLSFA-GLEQVPKGLP--AKLRVLDLSSN-RLNRAPQ-----PDELPEVD  297 (310)
T ss_dssp             CTTS-CCCCCCCSC---CSSCCCCTTCCCEECCSS-CCCSCCSCCC--SCCSCEECCSC-CCCSCCC-----TTSCCCCS
T ss_pred             CCCC-CCCccchhh---HHhccCcCcCCEEECCCC-CCCchhhhhc--CCCCEEECCCC-cCCCCch-----hhhCCCcc
Confidence            9885 34443 220   011222479999999885 6778887664  79999999984 5666653     35578899


Q ss_pred             EEEEecCC
Q 018079          303 SLRIGYCP  310 (361)
Q Consensus       303 ~L~l~~c~  310 (361)
                      .|++++++
T Consensus       298 ~L~L~~N~  305 (310)
T 4glp_A          298 NLTLDGNP  305 (310)
T ss_dssp             CEECSSTT
T ss_pred             EEECcCCC
Confidence            99998853

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.33  E-value=7.5e-12  Score=123.13  Aligned_cols=169  Identities=20%  Similarity=0.238  Sum_probs=134.8

Q ss_pred             CCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCC
Q 018079          126 PPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGP  204 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~  204 (361)
                      .+++|+.|++.++....++ .+..+++|+.|++++| .+..++.+..++ |+.|+++++. +..++.             
T Consensus        41 ~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~-------------  104 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKDLSS-------------  104 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCCTT-------------
T ss_pred             cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCCChh-------------
Confidence            3577889999998877776 4788999999999997 567777788899 9999999854 555431             


Q ss_pred             CCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCc
Q 018079          205 SSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENM  284 (361)
Q Consensus       205 ~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l  284 (361)
                              +..+++|+.|+++++ .+..++       .+..+++|+.|++++| .+..+ ..+..+++|+.|++++| .+
T Consensus       105 --------l~~l~~L~~L~Ls~N-~l~~l~-------~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N-~l  165 (605)
T 1m9s_A          105 --------LKDLKKLKSLSLEHN-GISDIN-------GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDN-QI  165 (605)
T ss_dssp             --------STTCTTCCEEECTTS-CCCCCG-------GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSS-CC
T ss_pred             --------hccCCCCCEEEecCC-CCCCCc-------cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCC-cC
Confidence                    558999999999986 344432       3567999999999986 67777 56788999999999986 45


Q ss_pred             ccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          285 EELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       285 ~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      ..++.     +..+++|+.|++++| .++.++ .+..+++|+.|++++|+-.
T Consensus       166 ~~~~~-----l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          166 SDIVP-----LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CCCGG-----GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred             CCchh-----hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcCc
Confidence            55542     677899999999996 677776 4889999999999998643

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.32  E-value=1.2e-12  Score=121.15  Aligned_cols=259  Identities=15%  Similarity=0.101  Sum_probs=150.6

Q ss_pred             eeecCCCCcccc-cCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCC-CCceEE
Q 018079            3 SLLNFGTNSLKY-MPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKK-NLLRLH   80 (361)
Q Consensus         3 ~L~l~~~~~l~~-lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~-~L~~L~   80 (361)
                      ++.++.+ .+.. +|..+....+|++|++       ..+.+....                .......+.+++ +|++|+
T Consensus         2 ~~~ls~n-~~~~~~~~~~~~~~~L~~L~L-------s~n~l~~~~----------------~~~l~~~l~~~~~~L~~L~   57 (362)
T 3goz_A            2 NYKLTLH-PGSNPVEEFTSIPHGVTSLDL-------SLNNLYSIS----------------TVELIQAFANTPASVTSLN   57 (362)
T ss_dssp             EEECCCC-TTCCHHHHHHTSCTTCCEEEC-------TTSCGGGSC----------------HHHHHHHHHTCCTTCCEEE
T ss_pred             ccccccc-cchHHHHHHHhCCCCceEEEc-------cCCCCChHH----------------HHHHHHHHHhCCCceeEEE
Confidence            4567777 5554 4454556666999999       455554432                112233466777 899999


Q ss_pred             EEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCC-CCccEEEecccCCCCCc-hh----hhcC-ccC
Q 018079           81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPP-LNVEELWIIFYGGNIFP-KW----LTSL-ANL  153 (361)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~p-~~----~~~l-~~L  153 (361)
                      +++|......                          ...+...+... ++|++|++++|.....+ ..    +..+ ++|
T Consensus        58 Ls~N~l~~~~--------------------------~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L  111 (362)
T 3goz_A           58 LSGNSLGFKN--------------------------SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI  111 (362)
T ss_dssp             CCSSCGGGSC--------------------------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             CcCCCCCHHH--------------------------HHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCc
Confidence            9888643210                          22333444444 78888888888755432 22    3344 788


Q ss_pred             CeeeecCCCCCCCCCC------CCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCC-CccEEEE
Q 018079          154 RELNLSLCFNCEHLPQ------LGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFP-KLKSLEI  224 (361)
Q Consensus       154 ~~L~l~~~~~~~~l~~------l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~L  224 (361)
                      +.|++++| .+...+.      +..+ + |++|+++++. +...........               +..++ +|++|++
T Consensus       112 ~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~---------------l~~~~~~L~~L~L  174 (362)
T 3goz_A          112 TVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI---------------LAAIPANVNSLNL  174 (362)
T ss_dssp             CEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH---------------HHTSCTTCCEEEC
T ss_pred             cEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH---------------HhcCCccccEeee
Confidence            88888886 3444432      3343 4 8888888753 443221111100               22444 8888888


Q ss_pred             cCCccchhhhh-hhccccccccC-CCccEEEEecCCCCCc-----cchhccC-CCCcceEeeccCCCcccCCc--ccccc
Q 018079          225 DGMKELEEWNY-RITRKENISIM-PRLSSLEVSSCNKLKA-----LPDYLLQ-MTVLQNLRIFFCENMEELPI--LEDHR  294 (361)
Q Consensus       225 ~~~~~l~~~~~-~~~~~~~~~~l-~~L~~L~l~~c~~l~~-----l~~~~~~-l~~L~~L~l~~c~~l~~lp~--L~~L~  294 (361)
                      +++. +..... .+  ...+..+ ++|+.|+++++ .+..     ++..+.. .++|++|+++++ .++..+.  +. ..
T Consensus       175 s~n~-l~~~~~~~l--~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~-~~  248 (362)
T 3goz_A          175 RGNN-LASKNCAEL--AKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLK-LL  248 (362)
T ss_dssp             TTSC-GGGSCHHHH--HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHH-HT
T ss_pred             cCCC-CchhhHHHH--HHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHH-HH
Confidence            8863 332221 00  1123345 48888888885 4554     4555554 458888888885 4443321  11 12


Q ss_pred             cCCCCCccEEEEecCC--C-----CCccccccCCCCCCCeEEEeCCc
Q 018079          295 TTDIPRLSSLRIGYCP--K-----LKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       295 l~~l~~L~~L~l~~c~--~-----l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      +..+++|++|++++|.  .     +..++..+..+++|+.|++++++
T Consensus       249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence            3457788888888864  1     23344567778888888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.28  E-value=1.7e-11  Score=107.33  Aligned_cols=58  Identities=21%  Similarity=0.273  Sum_probs=31.3

Q ss_pred             cCCCCCccEEEecccCCCCCc-hhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079          124 LQPPLNVEELWIIFYGGNIFP-KWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN  182 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~  182 (361)
                      +..+++|++|+++++....+| ..+..+++|+.|+++++ .+..++.  +..++ |+.|++++
T Consensus        79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~  140 (251)
T 3m19_A           79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT  140 (251)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcC
Confidence            445566666666666554443 23345566666666654 4444443  34455 55665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.23  E-value=3.5e-11  Score=117.26  Aligned_cols=161  Identities=21%  Similarity=0.224  Sum_probs=107.8

Q ss_pred             CCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      ++|++|++++|....+|   ..+++|+.|++++| .+..+|.   ++  |+.|+++++ .++.++.              
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~---l~~~L~~L~Ls~N-~l~~lp~--------------  137 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE---LPASLKHLDVDNN-QLTMLPE--------------  137 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--------------
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch---hhcCCCEEECCCC-cCCCCCC--------------
Confidence            56888888887776677   45678888888876 5555665   33  888888764 3444432              


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME  285 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  285 (361)
                               .+++|+.|+++++ .++.++.         .+++|+.|+++++ .++.+|. +.  ++|+.|+++++ .++
T Consensus       138 ---------~l~~L~~L~Ls~N-~l~~lp~---------~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N-~L~  193 (571)
T 3cvr_A          138 ---------LPALLEYINADNN-QLTMLPE---------LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTN-LLE  193 (571)
T ss_dssp             ---------CCTTCCEEECCSS-CCSCCCC---------CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCS
T ss_pred             ---------cCccccEEeCCCC-ccCcCCC---------cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCC-CCC
Confidence                     4678888888874 4544332         5678888888875 5777776 44  78888888874 666


Q ss_pred             cCCccccccc-CCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccc
Q 018079          286 ELPILEDHRT-TDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       286 ~lp~L~~L~l-~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                      .+|.+.. .+ ...+.|+.|++++ +.++.+|..+..+++|+.|++++|+--
T Consensus       194 ~lp~~~~-~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          194 SLPAVPV-RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             SCCCCC---------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             chhhHHH-hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCC
Confidence            7664111 00 0012238888887 477788877777888888888888643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.20  E-value=3.5e-11  Score=106.12  Aligned_cols=144  Identities=19%  Similarity=0.206  Sum_probs=95.1

Q ss_pred             CCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079          125 QPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG  203 (361)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  203 (361)
                      ..+++|++|+++++....++ .+..+++|+.|++++| .+..++.+..++ |+.|+++++. ++.++.            
T Consensus        38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~L~~N~-l~~l~~------------  102 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRNR-LKNLNG------------  102 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSSC-CSCCTT------------
T ss_pred             hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChhhccCCCCCEEECCCCc-cCCcCc------------
Confidence            34567888888877766666 5667788888888775 566666677777 8888887643 444432            


Q ss_pred             CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCC
Q 018079          204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCEN  283 (361)
Q Consensus       204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  283 (361)
                               +.. ++|+.|+++++ .+..++       .+..+++|+.|+++++ .++.++ .+..+++|+.|+++++ .
T Consensus       103 ---------~~~-~~L~~L~L~~N-~l~~~~-------~l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~  161 (263)
T 1xeu_A          103 ---------IPS-ACLSRLFLDNN-ELRDTD-------SLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-E  161 (263)
T ss_dssp             ---------CCC-SSCCEEECCSS-CCSBSG-------GGTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-C
T ss_pred             ---------ccc-CcccEEEccCC-ccCCCh-------hhcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-c
Confidence                     113 77888888774 344332       2456778888888774 566665 5666778888888774 4


Q ss_pred             cccCCcccccccCCCCCccEEEEecC
Q 018079          284 MEELPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       284 l~~lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                      ++.++     .+..+++|+.|+++++
T Consensus       162 i~~~~-----~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          162 ITNTG-----GLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCBCT-----TSTTCCCCCEEEEEEE
T ss_pred             CcchH-----HhccCCCCCEEeCCCC
Confidence            44442     3455777777777774

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.16  E-value=1.6e-10  Score=112.61  Aligned_cols=48  Identities=23%  Similarity=0.205  Sum_probs=24.9

Q ss_pred             CccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccc
Q 018079          129 NVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKN  182 (361)
Q Consensus       129 ~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~  182 (361)
                      +|++|++++|....+|.   .+++|+.|++++| .+..+|.  .++ |+.|++++
T Consensus       121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~  169 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRN  169 (571)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCC
Confidence            55555555555544544   3555555555554 3444443  334 55555554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.11  E-value=8.3e-10  Score=95.15  Aligned_cols=147  Identities=16%  Similarity=0.117  Sum_probs=91.2

Q ss_pred             ccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079          130 VEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS  206 (361)
Q Consensus       130 L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  206 (361)
                      -+.++.++.....+|..+  .++|+.|+++++ .+..+++  +..++ |+.|+++++. ++.++...             
T Consensus        21 ~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~-------------   83 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGI--PTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGV-------------   83 (229)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------------
T ss_pred             CCEeEccCCCcCccCCCC--CCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhh-------------
Confidence            456666666655666543  367888888875 4444433  66777 8888887643 55554432             


Q ss_pred             CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCccc
Q 018079          207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEE  286 (361)
Q Consensus       207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  286 (361)
                            +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.
T Consensus        84 ------~~~l~~L~~L~Ls~N-~l~~l~~-----~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N-~l~~  149 (229)
T 3e6j_A           84 ------FDSLTQLTVLDLGTN-QLTVLPS-----AVFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQN-QLKS  149 (229)
T ss_dssp             ------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSS-CCCC
T ss_pred             ------cccCCCcCEEECCCC-cCCccCh-----hHhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCC-cCCc
Confidence                  336777788877764 4544432     23456777778877763 56677777777777777777763 4544


Q ss_pred             CCcccccccCCCCCccEEEEecCC
Q 018079          287 LPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       287 lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                      +|.   -.+..+++|+.|++.+++
T Consensus       150 ~~~---~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          150 IPH---GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCT---TTTTTCTTCCEEECTTSC
T ss_pred             cCH---HHHhCCCCCCEEEeeCCC
Confidence            442   134456677777776643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.09  E-value=2.9e-10  Score=100.19  Aligned_cols=145  Identities=15%  Similarity=0.176  Sum_probs=112.1

Q ss_pred             cCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhc
Q 018079           70 LSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTS  149 (361)
Q Consensus        70 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~  149 (361)
                      +.++++|+.|+++.+....                            .    ..+..+++|++|++++|....++. +..
T Consensus        37 ~~~l~~L~~L~l~~n~i~~----------------------------l----~~l~~l~~L~~L~L~~N~i~~~~~-l~~   83 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQS----------------------------L----AGMQFFTNLKELHLSHNQISDLSP-LKD   83 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCC----------------------------C----TTGGGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred             hhhcCcCcEEECcCCCccc----------------------------c----hHHhhCCCCCEEECCCCccCCChh-hcc
Confidence            4456789999998876543                            1    256678899999999998877777 788


Q ss_pred             CccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCc
Q 018079          150 LANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMK  228 (361)
Q Consensus       150 l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~  228 (361)
                      +++|+.|++++| .+..++.+.. + |+.|+++++ .++.++.                     +..+++|+.|+++++ 
T Consensus        84 l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~L~~N-~l~~~~~---------------------l~~l~~L~~L~Ls~N-  138 (263)
T 1xeu_A           84 LTKLEELSVNRN-RLKNLNGIPS-ACLSRLFLDNN-ELRDTDS---------------------LIHLKNLEILSIRNN-  138 (263)
T ss_dssp             CSSCCEEECCSS-CCSCCTTCCC-SSCCEEECCSS-CCSBSGG---------------------GTTCTTCCEEECTTS-
T ss_pred             CCCCCEEECCCC-ccCCcCcccc-CcccEEEccCC-ccCCChh---------------------hcCcccccEEECCCC-
Confidence            999999999996 6777777555 8 999999975 3555431                     458899999999985 


Q ss_pred             cchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079          229 ELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       229 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                      .++.++       .+..+++|+.|+++++ .++.+ ..+..+++|+.|+++++
T Consensus       139 ~i~~~~-------~l~~l~~L~~L~L~~N-~i~~~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          139 KLKSIV-------MLGFLSKLEVLDLHGN-EITNT-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             CCCBCG-------GGGGCTTCCEEECTTS-CCCBC-TTSTTCCCCCEEEEEEE
T ss_pred             cCCCCh-------HHccCCCCCEEECCCC-cCcch-HHhccCCCCCEEeCCCC
Confidence            455443       3557899999999985 67666 56777999999999885

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.08  E-value=5.2e-11  Score=110.01  Aligned_cols=216  Identities=16%  Similarity=0.072  Sum_probs=139.8

Q ss_pred             HHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCC-CccEEEecccCCCCC-
Q 018079           66 ERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPL-NVEELWIIFYGGNIF-  143 (361)
Q Consensus        66 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~-  143 (361)
                      .+..+...++|++|++++|......                          ...+.+.+..++ +|++|++++|..... 
T Consensus        14 ~~~~~~~~~~L~~L~Ls~n~l~~~~--------------------------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~   67 (362)
T 3goz_A           14 VEEFTSIPHGVTSLDLSLNNLYSIS--------------------------TVELIQAFANTPASVTSLNLSGNSLGFKN   67 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSC--------------------------HHHHHHHHHTCCTTCCEEECCSSCGGGSC
T ss_pred             HHHHHhCCCCceEEEccCCCCChHH--------------------------HHHHHHHHHhCCCceeEEECcCCCCCHHH
Confidence            3444566667999999988743210                          344557777788 899999999876553 


Q ss_pred             chhhhcC-----ccCCeeeecCCCCCCCCCC------CCCC-c-cceEeccccccceeecccccccCCCCCCCCCCCCCC
Q 018079          144 PKWLTSL-----ANLRELNLSLCFNCEHLPQ------LGKL-P-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSS  210 (361)
Q Consensus       144 p~~~~~l-----~~L~~L~l~~~~~~~~l~~------l~~l-~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~  210 (361)
                      +..+..+     ++|+.|++++|. +...+.      +..+ + |+.|+++++. ++..+.......             
T Consensus        68 ~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-------------  132 (362)
T 3goz_A           68 SDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQA-------------  132 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHH-------------
T ss_pred             HHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHH-------------
Confidence            4444443     899999999984 543332      4445 6 9999999865 555544322111             


Q ss_pred             CcccCC-CCccEEEEcCCccchhhhh-hhccccccccCC-CccEEEEecCCCCCccch-----hccCC-CCcceEeeccC
Q 018079          211 PSVIAF-PKLKSLEIDGMKELEEWNY-RITRKENISIMP-RLSSLEVSSCNKLKALPD-----YLLQM-TVLQNLRIFFC  281 (361)
Q Consensus       211 ~~l~~~-~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~-~L~~L~l~~c~~l~~l~~-----~~~~l-~~L~~L~l~~c  281 (361)
                        +..+ ++|++|+++++ .+.+... .+  ...+..++ +|++|++++| .++....     .+..+ ++|++|++++|
T Consensus       133 --l~~~~~~L~~L~Ls~N-~l~~~~~~~l--~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  206 (362)
T 3goz_A          133 --FSNLPASITSLNLRGN-DLGIKSSDEL--IQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN  206 (362)
T ss_dssp             --HTTSCTTCCEEECTTS-CGGGSCHHHH--HHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             --HHhCCCceeEEEccCC-cCCHHHHHHH--HHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence              2233 59999999986 3432111 00  11233455 9999999997 4554332     33445 59999999986


Q ss_pred             CCccc-----CCcccccccCC-CCCccEEEEecCCCCCcc-----ccccCCCCCCCeEEEeCCc
Q 018079          282 ENMEE-----LPILEDHRTTD-IPRLSSLRIGYCPKLKVL-----PDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       282 ~~l~~-----lp~L~~L~l~~-l~~L~~L~l~~c~~l~~l-----~~~l~~l~~L~~L~l~~c~  334 (361)
                      . ++.     ++.    .+.. .++|++|++++| .++..     ...+..+++|+.|++++|.
T Consensus       207 ~-i~~~~~~~l~~----~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          207 L-LGLKSYAELAY----IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             C-GGGSCHHHHHH----HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             C-CChhHHHHHHH----HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence            3 443     221    1222 458999999986 55543     3445788999999999986

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.08  E-value=1.3e-12  Score=127.66  Aligned_cols=102  Identities=22%  Similarity=0.313  Sum_probs=74.4

Q ss_pred             CccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCC
Q 018079          218 KLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTD  297 (361)
Q Consensus       218 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~  297 (361)
                      .|+.|+++++ .++.++       .+..+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.+|     .+++
T Consensus       442 ~L~~L~Ls~n-~l~~lp-------~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-----~l~~  506 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLC-------HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-----GVAN  506 (567)
T ss_dssp             TCSEEECTTS-CCSSCC-------CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-----GGTT
T ss_pred             CceEEEecCC-CCCCCc-------CccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-----ccCC
Confidence            5777888774 454432       1556788888888874 67788888888888888888874 555666     4667


Q ss_pred             CCCccEEEEecCCCCCcc--ccccCCCCCCCeEEEeCCcc
Q 018079          298 IPRLSSLRIGYCPKLKVL--PDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       298 l~~L~~L~l~~c~~l~~l--~~~l~~l~~L~~L~l~~c~~  335 (361)
                      +++|+.|++++| .++.+  |..+..+++|+.|++++|+-
T Consensus       507 l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          507 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            788888888874 56666  77788888888888888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.07  E-value=5.8e-10  Score=102.92  Aligned_cols=174  Identities=21%  Similarity=0.217  Sum_probs=120.0

Q ss_pred             ccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CC-CCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          130 VEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LG-KLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       130 L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~-~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      -+.++++++....+|..+  ...++.|+++++ .+..++.  +. .++ |+.|+++++ .+..++...            
T Consensus        20 ~~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~------------   83 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL--PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEA------------   83 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC--CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTT------------
T ss_pred             CCEEEeCCCCcCccCccC--CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhh------------
Confidence            357777777766677643  345888999886 5665554  44 788 999999874 466666443            


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENM  284 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l  284 (361)
                             +..+++|+.|+++++ .+..++.     ..+..+++|+.|+++++ .+..+ +..+..+++|+.|+++++ .+
T Consensus        84 -------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N-~l  148 (361)
T 2xot_A           84 -------FVPVPNLRYLDLSSN-HLHTLDE-----FLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQN-QI  148 (361)
T ss_dssp             -------TTTCTTCCEEECCSS-CCCEECT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             -------ccCCCCCCEEECCCC-cCCcCCH-----HHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCC-cC
Confidence                   347889999999884 4555443     34567889999999885 56665 456677899999999884 66


Q ss_pred             ccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCC--CCeEEEeCCcc
Q 018079          285 EELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTT--LQKLTIWGCPL  335 (361)
Q Consensus       285 ~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~--L~~L~l~~c~~  335 (361)
                      +.+|.--.-.+..+++|+.|++++ +.++.+| ..+..++.  ++.|++.++|.
T Consensus       149 ~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          149 SRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred             CeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCCc
Confidence            666631100114588999999998 4777777 55666776  47889988763

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.06  E-value=5.2e-10  Score=94.77  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=107.3

Q ss_pred             CCCccEEEecccCCCCCchh-hhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079          127 PLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED  202 (361)
Q Consensus       127 l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~  202 (361)
                      .+++++|+++++....++.. +..+++|+.|+++++ .+..++.  +..++ |++|+++++ .++.++...         
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---------   95 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGV---------   95 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---------
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhH---------
Confidence            35788899888877665543 567888999998886 5666655  57788 888988874 355555432         


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccC
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFC  281 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c  281 (361)
                                +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.. +..+++|+.|+++++
T Consensus        96 ----------~~~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           96 ----------FDKLTQLKELALNTN-QLQSLPD-----GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             ----------TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             ----------hcCccCCCEEEcCCC-cCcccCH-----hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence                      346788888888874 4554433     23557888888988885 56666654 566888888888886


Q ss_pred             CCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCC
Q 018079          282 ENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTT  324 (361)
Q Consensus       282 ~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~  324 (361)
                      +-...           +++|+.|+++.+.....+|..++.++.
T Consensus       159 ~~~~~-----------~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          159 PWDCT-----------CPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CBCCC-----------TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             CeecC-----------CCCHHHHHHHHHhCCceeeccCccccC
Confidence            43333           445555556555445567766665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.05  E-value=3.1e-10  Score=96.18  Aligned_cols=58  Identities=24%  Similarity=0.322  Sum_probs=31.9

Q ss_pred             cCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079          124 LQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN  182 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~  182 (361)
                      +..+++|++|+++++....+|.. +..+++|+.|+++++ .+..++.  +..++ |+.|++++
T Consensus        72 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  133 (208)
T 2o6s_A           72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQ  133 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCC
Confidence            34556666666666655444433 345666666666654 3444443  45555 66666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.04  E-value=8.8e-10  Score=90.05  Aligned_cols=130  Identities=24%  Similarity=0.297  Sum_probs=89.9

Q ss_pred             CCCCCccEEEecccCCC--CCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCC
Q 018079          125 QPPLNVEELWIIFYGGN--IFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSE  201 (361)
Q Consensus       125 ~~l~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~  201 (361)
                      ...++|++|++++|...  .+|..+..+++|+.|++++| .+..+..+..++ |+.|+++++. +....+..        
T Consensus        21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~--------   90 (168)
T 2ell_A           21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPKLPKLKKLELSENR-IFGGLDML--------   90 (168)
T ss_dssp             SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCCSSCCCCSSCCEEEEESCC-CCSCCCHH--------
T ss_pred             CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCChhhhccCCCCCEEECcCCc-CchHHHHH--------
Confidence            44578999999988876  68877788899999999987 466555577788 8888888754 44422211        


Q ss_pred             CCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch----hccCCCCcceEe
Q 018079          202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----YLLQMTVLQNLR  277 (361)
Q Consensus       202 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~  277 (361)
                                 +..+++|++|+++++ .+..++.    ...+..+++|+.|+++++ .+..++.    .+..+++|+.|+
T Consensus        91 -----------~~~l~~L~~L~Ls~N-~l~~~~~----~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           91 -----------AEKLPNLTHLNLSGN-KLKDIST----LEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             -----------HHHCTTCCEEECBSS-SCCSSGG----GGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEET
T ss_pred             -----------HhhCCCCCEEeccCC-ccCcchh----HHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEec
Confidence                       224788888888775 4555442    235567788888888775 4555554    455677777777


Q ss_pred             eccC
Q 018079          278 IFFC  281 (361)
Q Consensus       278 l~~c  281 (361)
                      +++|
T Consensus       154 l~~n  157 (168)
T 2ell_A          154 GYDR  157 (168)
T ss_dssp             TEET
T ss_pred             CCCC
Confidence            7765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.03  E-value=2.8e-09  Score=91.28  Aligned_cols=85  Identities=21%  Similarity=0.223  Sum_probs=38.3

Q ss_pred             ccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCC
Q 018079          244 SIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLR  321 (361)
Q Consensus       244 ~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~  321 (361)
                      ..+++|+.|+++++ .++.+|..+ ..+++|+.|+++++ .++.++.   -.+.++++|+.|+++++ .++.++ ..+..
T Consensus        77 ~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~  150 (220)
T 2v9t_B           77 QGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNAN-KINCLRV---DAFQDLHNLNLLSLYDN-KLQTIAKGTFSP  150 (220)
T ss_dssp             TTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTCTTCCEEECCSS-CCSCCCTTTTTT
T ss_pred             hCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCC-CCCEeCH---HHcCCCCCCCEEECCCC-cCCEECHHHHhC
Confidence            34445555555442 344444332 33455555555542 2222210   02334455555555552 344444 33555


Q ss_pred             CCCCCeEEEeCCc
Q 018079          322 TTTLQKLTIWGCP  334 (361)
Q Consensus       322 l~~L~~L~l~~c~  334 (361)
                      +++|+.|++++++
T Consensus       151 l~~L~~L~L~~N~  163 (220)
T 2v9t_B          151 LRAIQTMHLAQNP  163 (220)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEEeCCCC
Confidence            5555666555554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.03  E-value=5.2e-09  Score=89.56  Aligned_cols=86  Identities=10%  Similarity=0.149  Sum_probs=40.5

Q ss_pred             cccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcc-ccccC
Q 018079          243 ISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVL-PDCLL  320 (361)
Q Consensus       243 ~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l-~~~l~  320 (361)
                      +..+++|+.|+++++ .++.++.. +..+++|++|+++++ .+..++.   -.+.++++|+.|+++++ .++.+ |..+.
T Consensus        77 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~  150 (220)
T 2v70_A           77 FEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLMLRSN-RITCVGN---DSFIGLSSVRLLSLYDN-QITTVAPGAFD  150 (220)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCT---TSSTTCTTCSEEECTTS-CCCCBCTTTTT
T ss_pred             hCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEECCCC-cCCeECH---hHcCCCccCCEEECCCC-cCCEECHHHhc
Confidence            334555555555543 33433332 344555555555553 2222210   02334555555555553 34444 35555


Q ss_pred             CCCCCCeEEEeCCc
Q 018079          321 RTTTLQKLTIWGCP  334 (361)
Q Consensus       321 ~l~~L~~L~l~~c~  334 (361)
                      .+++|+.|++++++
T Consensus       151 ~l~~L~~L~L~~N~  164 (220)
T 2v70_A          151 TLHSLSTLNLLANP  164 (220)
T ss_dssp             TCTTCCEEECCSCC
T ss_pred             CCCCCCEEEecCcC
Confidence            56666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.00  E-value=1.5e-09  Score=92.92  Aligned_cols=145  Identities=17%  Similarity=0.164  Sum_probs=109.0

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL   81 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l   81 (361)
                      +.++++++ .+..+|..+.  .++++|++       ..+.+..++                    ...+.++++|+.|++
T Consensus        14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l-------~~n~i~~i~--------------------~~~~~~l~~L~~L~L   63 (220)
T 2v9t_B           14 NIVDCRGK-GLTEIPTNLP--ETITEIRL-------EQNTIKVIP--------------------PGAFSPYKKLRRIDL   63 (220)
T ss_dssp             TEEECTTS-CCSSCCSSCC--TTCCEEEC-------CSSCCCEEC--------------------TTSSTTCTTCCEEEC
T ss_pred             CEEEcCCC-CcCcCCCccC--cCCCEEEC-------CCCcCCCcC--------------------HhHhhCCCCCCEEEC
Confidence            35777877 8889998765  68899998       555555442                    013677889999999


Q ss_pred             EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhh-hcCccCCeeeecC
Q 018079           82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWL-TSLANLRELNLSL  160 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~-~~l~~L~~L~l~~  160 (361)
                      +.|....                              ..+..+..+++|++|+++++....+|..+ ..+++|+.|++++
T Consensus        64 s~N~i~~------------------------------~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~  113 (220)
T 2v9t_B           64 SNNQISE------------------------------LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA  113 (220)
T ss_dssp             CSSCCCE------------------------------ECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCcCCC------------------------------cCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC
Confidence            9887532                              11456778899999999999988877654 6799999999999


Q ss_pred             CCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCC
Q 018079          161 CFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGM  227 (361)
Q Consensus       161 ~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~  227 (361)
                      + .+..++.  +..++ |+.|+++++ .++.++...                   +..+++|+.|++.+.
T Consensus       114 N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-------------------~~~l~~L~~L~L~~N  162 (220)
T 2v9t_B          114 N-KINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGT-------------------FSPLRAIQTMHLAQN  162 (220)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTT-------------------TTTCTTCCEEECCSS
T ss_pred             C-CCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHH-------------------HhCCCCCCEEEeCCC
Confidence            6 5665543  78889 999999974 466666543                   347889999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.98  E-value=7.4e-10  Score=88.59  Aligned_cols=126  Identities=22%  Similarity=0.305  Sum_probs=91.0

Q ss_pred             CCCCccEEEecccCCC--CCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccccccee-ecccccccCCCCC
Q 018079          126 PPLNVEELWIIFYGGN--IFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKR-VGNEFLGIEESSE  201 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~--~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~-l~~~~~~~~~~~~  201 (361)
                      ..+++++|++++|...  .+|..+..+++|+.|++++| .+..++.++.++ |+.|+++++. +.. ++..         
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~---------   83 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGLEVL---------   83 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCTHHH---------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchHHHH---------
Confidence            4478999999998876  57877788999999999987 566666678888 9999998754 444 3321         


Q ss_pred             CCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch----hccCCCCcceEe
Q 018079          202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----YLLQMTVLQNLR  277 (361)
Q Consensus       202 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~  277 (361)
                                 +..+++|++|+++++ .+..++.    ...+..+++|+.|+++++ .++.++.    .+..+++|+.|+
T Consensus        84 -----------~~~l~~L~~L~ls~N-~i~~~~~----~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           84 -----------AEKCPNLTHLNLSGN-KIKDLST----IEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             -----------HHHCTTCCEEECTTS-CCCSHHH----HGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEET
T ss_pred             -----------hhhCCCCCEEECCCC-cCCChHH----HHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCccccc
Confidence                       235888999998875 4555442    235667888888888885 5666654    456677787777


Q ss_pred             ec
Q 018079          278 IF  279 (361)
Q Consensus       278 l~  279 (361)
                      ++
T Consensus       147 l~  148 (149)
T 2je0_A          147 GY  148 (149)
T ss_dssp             TB
T ss_pred             CC
Confidence            65

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.98  E-value=3.1e-12  Score=125.09  Aligned_cols=190  Identities=14%  Similarity=0.087  Sum_probs=130.9

Q ss_pred             hhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccC-------------CCC-CchhhhcCccCCeee-ec
Q 018079           95 EEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYG-------------GNI-FPKWLTSLANLRELN-LS  159 (361)
Q Consensus        95 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------------~~~-~p~~~~~l~~L~~L~-l~  159 (361)
                      ....++..|++..+.       ...+++.++.+++|+.|+++++.             ... .|..++.+++|+.|+ +.
T Consensus       346 ~~~~~L~~L~Ls~n~-------L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~  418 (567)
T 1dce_A          346 ATDEQLFRCELSVEK-------STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  418 (567)
T ss_dssp             STTTTSSSCCCCHHH-------HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             ccCccceeccCChhh-------HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchh
Confidence            345667777777766       67778888888888888876543             111 345556677777776 33


Q ss_pred             CCCCCCCCCC-------CCCCc---cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc
Q 018079          160 LCFNCEHLPQ-------LGKLP---LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE  229 (361)
Q Consensus       160 ~~~~~~~l~~-------l~~l~---L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  229 (361)
                      . ..+..++.       +..++   |+.|+++++ .++.+|.                     ++.+++|+.|+++++ .
T Consensus       419 ~-n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~---------------------~~~l~~L~~L~Ls~N-~  474 (567)
T 1dce_A          419 A-AYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH---------------------LEQLLLVTHLDLSHN-R  474 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC---------------------GGGGTTCCEEECCSS-C
T ss_pred             h-cccchhhhhhhhcccccccCccCceEEEecCC-CCCCCcC---------------------ccccccCcEeecCcc-c
Confidence            2 12211111       12222   777888764 4555543                     448899999999985 5


Q ss_pred             chhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccC--CcccccccCCCCCccEEEEe
Q 018079          230 LEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEEL--PILEDHRTTDIPRLSSLRIG  307 (361)
Q Consensus       230 l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l--p~L~~L~l~~l~~L~~L~l~  307 (361)
                      +..+|.      .+..+++|+.|+++++ .++.+| .+..+++|+.|+++++ .++.+  |.    .++++++|+.|+++
T Consensus       475 l~~lp~------~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~----~l~~l~~L~~L~L~  541 (567)
T 1dce_A          475 LRALPP------ALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQ----PLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCCCCG------GGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTG----GGGGCTTCCEEECT
T ss_pred             ccccch------hhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcH----HHhcCCCCCEEEec
Confidence            665554      5668999999999984 788888 8888999999999985 56665  54    57779999999999


Q ss_pred             cCCCCCcccccc----CCCCCCCeEE
Q 018079          308 YCPKLKVLPDCL----LRTTTLQKLT  329 (361)
Q Consensus       308 ~c~~l~~l~~~l----~~l~~L~~L~  329 (361)
                      ++ .++.+|...    ..+|+|+.|+
T Consensus       542 ~N-~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          542 GN-SLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             TS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CC-cCCCCccHHHHHHHHCcccCccC
Confidence            85 566665332    3478888875

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.97  E-value=1.5e-09  Score=89.51  Aligned_cols=131  Identities=17%  Similarity=0.196  Sum_probs=91.3

Q ss_pred             cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079          124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED  202 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~  202 (361)
                      ...+.+|++|+++++....+|......++|+.|++++| .+..++.++.++ |++|+++++ .++.++..+         
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~---------   83 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNN-RICRIGEGL---------   83 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSS-CCCEECSCH---------
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCC-cccccCcch---------
Confidence            45667899999999887777653334448999999986 566666678888 899998874 466665443         


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh----ccCCCCcceEee
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY----LLQMTVLQNLRI  278 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~----~~~l~~L~~L~l  278 (361)
                                +..+++|++|+++++ .+..++.    ...+..+++|+.|+++++ .+..+|..    +..+++|+.|++
T Consensus        84 ----------~~~l~~L~~L~L~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           84 ----------DQALPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             ----------HHHCTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ----------hhcCCCCCEEECCCC-cCCcchh----hHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCC
Confidence                      236788888888874 4554443    234557888888888875 45566654    566777777777


Q ss_pred             ccC
Q 018079          279 FFC  281 (361)
Q Consensus       279 ~~c  281 (361)
                      +++
T Consensus       148 ~~n  150 (176)
T 1a9n_A          148 QKV  150 (176)
T ss_dssp             EEC
T ss_pred             CcC
Confidence            664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.94  E-value=2.8e-09  Score=91.78  Aligned_cols=143  Identities=17%  Similarity=0.132  Sum_probs=90.1

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ   82 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~   82 (361)
                      .++.+++ .+..+|.++.  .+|++|++.       .+.+..+.                    +..+.++++|+.|+++
T Consensus        23 ~v~c~~~-~l~~ip~~~~--~~L~~L~Ls-------~n~i~~~~--------------------~~~~~~l~~L~~L~L~   72 (229)
T 3e6j_A           23 TVDCRSK-RHASVPAGIP--TNAQILYLH-------DNQITKLE--------------------PGVFDSLINLKELYLG   72 (229)
T ss_dssp             EEECTTS-CCSSCCSCCC--TTCSEEECC-------SSCCCCCC--------------------TTTTTTCTTCCEEECC
T ss_pred             EeEccCC-CcCccCCCCC--CCCCEEEcC-------CCccCccC--------------------HHHhhCccCCcEEECC
Confidence            4666666 7778887664  778888883       33333221                    0113344455555555


Q ss_pred             ecCCCCCCcchhhhhhcccccccccccccccchhhHHHH-HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCC
Q 018079           83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLL-EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLC  161 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~  161 (361)
                      .|.........+...++++.|++..+.       ...+. ..+..+++|++|+++++....+|..+..+++|+.|+++++
T Consensus        73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~-------l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N  145 (229)
T 3e6j_A           73 SNQLGALPVGVFDSLTQLTVLDLGTNQ-------LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN  145 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred             CCCCCCcChhhcccCCCcCEEECCCCc-------CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC
Confidence            544433333333444444444444432       22222 3356788999999999988888888889999999999986


Q ss_pred             CCCCCCCC--CCCCc-cceEecccc
Q 018079          162 FNCEHLPQ--LGKLP-LEKLQLKNL  183 (361)
Q Consensus       162 ~~~~~l~~--l~~l~-L~~L~l~~~  183 (361)
                       .+..++.  +..++ |+.|++.++
T Consensus       146 -~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A          146 -QLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             -CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             -cCCccCHHHHhCCCCCCEEEeeCC
Confidence             6666664  77788 999998874

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.91  E-value=2.4e-09  Score=87.40  Aligned_cols=128  Identities=18%  Similarity=0.082  Sum_probs=92.9

Q ss_pred             CceeecCCCCccc--ccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            1 MRSLLNFGTNSLK--YMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         1 L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      |++|++++| .+.  .+|..+..+++|++|++.++       .+..+                      ..+.++++|+.
T Consensus        26 L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-------~l~~~----------------------~~~~~l~~L~~   75 (168)
T 2ell_A           26 VRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-------GLISV----------------------SNLPKLPKLKK   75 (168)
T ss_dssp             CSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-------CCCCC----------------------SSCCCCSSCCE
T ss_pred             CCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-------CCCCh----------------------hhhccCCCCCE
Confidence            578999998 777  88888889999999999433       22211                      12677889999


Q ss_pred             EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc--hhhhcCccCCee
Q 018079           79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP--KWLTSLANLREL  156 (361)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L  156 (361)
                      |+++.|....                            .  ++..+..+++|++|++++|....+|  ..+..+++|+.|
T Consensus        76 L~Ls~N~l~~----------------------------~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           76 LELSENRIFG----------------------------G--LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             EEEESCCCCS----------------------------C--CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred             EECcCCcCch----------------------------H--HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence            9999887543                            0  2233345788999999998877765  567788999999


Q ss_pred             eecCCCCCCCCCC-----CCCCc-cceEeccccccceeec
Q 018079          157 NLSLCFNCEHLPQ-----LGKLP-LEKLQLKNLKSVKRVG  190 (361)
Q Consensus       157 ~l~~~~~~~~l~~-----l~~l~-L~~L~l~~~~~l~~l~  190 (361)
                      ++++| .+..++.     +..++ |+.|+++++. +..++
T Consensus       126 ~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~  163 (168)
T 2ell_A          126 DLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP  163 (168)
T ss_dssp             ECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred             EeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence            99987 4555443     67788 9999998764 34444

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.91  E-value=1.3e-08  Score=87.03  Aligned_cols=145  Identities=17%  Similarity=0.207  Sum_probs=96.4

Q ss_pred             cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC---CCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079          131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS  206 (361)
Q Consensus       131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  206 (361)
                      ++++++++....+|..+.  ..++.|+++++ .+..++.   +..++ |+.|+++++ .++.++...             
T Consensus        14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~-------------   76 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGA-------------   76 (220)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTT-------------
T ss_pred             CEeEeCCCCcccCccCCC--CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHH-------------
Confidence            477777777666776442  35678888885 4555432   56777 888888864 366665432             


Q ss_pred             CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcc
Q 018079          207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENME  285 (361)
Q Consensus       207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~  285 (361)
                            +..+++|++|+++++ .+..++.     ..+..+++|++|+++++ .++.+ |..+..+++|+.|+++++ .++
T Consensus        77 ------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~  142 (220)
T 2v70_A           77 ------FEGASGVNEILLTSN-RLENVQH-----KMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDN-QIT  142 (220)
T ss_dssp             ------TTTCTTCCEEECCSS-CCCCCCG-----GGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTS-CCC
T ss_pred             ------hCCCCCCCEEECCCC-ccCccCH-----hHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCC-cCC
Confidence                  347788888888874 4444433     34567888888888874 56655 456677888888888874 444


Q ss_pred             cC-CcccccccCCCCCccEEEEecCC
Q 018079          286 EL-PILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       286 ~l-p~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                      .+ |.    .+..+++|+.|++.+++
T Consensus       143 ~~~~~----~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          143 TVAPG----AFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CBCTT----TTTTCTTCCEEECCSCC
T ss_pred             EECHH----HhcCCCCCCEEEecCcC
Confidence            44 32    45567888888888754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.90  E-value=7.6e-10  Score=88.53  Aligned_cols=120  Identities=18%  Similarity=0.127  Sum_probs=82.3

Q ss_pred             CceeecCCCCccc--ccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            1 MRSLLNFGTNSLK--YMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         1 L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      |++|++++| .+.  .+|..++.+++|++|++       ..+.+..+                      ..+.++++|+.
T Consensus        19 l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l-------~~n~l~~~----------------------~~~~~l~~L~~   68 (149)
T 2je0_A           19 VKELVLDNS-RSNEGKLEGLTDEFEELEFLST-------INVGLTSI----------------------ANLPKLNKLKK   68 (149)
T ss_dssp             CSEEECTTC-BCBTTBCCSCCTTCTTCCEEEC-------TTSCCCCC----------------------TTCCCCTTCCE
T ss_pred             CeEEEccCC-cCChhHHHHHHhhcCCCcEEEC-------cCCCCCCc----------------------hhhhcCCCCCE
Confidence            578999999 777  78888899999999999       34433321                      12667788888


Q ss_pred             EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCc--hhhhcCccCCee
Q 018079           79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFP--KWLTSLANLREL  156 (361)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p--~~~~~l~~L~~L  156 (361)
                      |+++.|....                            .  ++..+..+++|++|++++|....+|  ..+..+++|+.|
T Consensus        69 L~Ls~n~i~~----------------------------~--~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           69 LELSDNRVSG----------------------------G--LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             EECCSSCCCS----------------------------C--THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred             EECCCCcccc----------------------------h--HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence            8888877532                            0  2333445677888888887766544  566778888888


Q ss_pred             eecCCCCCCCCCC-----CCCCc-cceEecc
Q 018079          157 NLSLCFNCEHLPQ-----LGKLP-LEKLQLK  181 (361)
Q Consensus       157 ~l~~~~~~~~l~~-----l~~l~-L~~L~l~  181 (361)
                      ++++| .+..++.     +..++ |+.|+++
T Consensus       119 ~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          119 DLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             eCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            88876 4444443     55566 7777664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.78  E-value=6.8e-08  Score=88.99  Aligned_cols=148  Identities=21%  Similarity=0.270  Sum_probs=109.3

Q ss_pred             CCeeeecCCCCCCCCCCCCCCc--cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccc
Q 018079          153 LRELNLSLCFNCEHLPQLGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKEL  230 (361)
Q Consensus       153 L~~L~l~~~~~~~~l~~l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l  230 (361)
                      -+.++++++ .+..+|.  .++  ++.|++++ +.++.++...+.                  ..+++|++|+++++ .+
T Consensus        20 ~~~l~c~~~-~l~~iP~--~~~~~l~~L~Ls~-N~l~~l~~~~~~------------------~~l~~L~~L~L~~N-~i   76 (361)
T 2xot_A           20 SNILSCSKQ-QLPNVPQ--SLPSYTALLDLSH-NNLSRLRAEWTP------------------TRLTNLHSLLLSHN-HL   76 (361)
T ss_dssp             TTEEECCSS-CCSSCCS--SCCTTCSEEECCS-SCCCEECTTSSS------------------SCCTTCCEEECCSS-CC
T ss_pred             CCEEEeCCC-CcCccCc--cCCCCCCEEECCC-CCCCccChhhhh------------------hcccccCEEECCCC-cC
Confidence            356777764 6777775  345  99999997 457777765432                  16899999999984 56


Q ss_pred             hhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079          231 EEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                      ..++.     ..+..+++|+.|+++++ .++.++. .+..+++|+.|+++++ .+..++.   -.+.++++|+.|++++ 
T Consensus        77 ~~i~~-----~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~---~~~~~l~~L~~L~L~~-  145 (361)
T 2xot_A           77 NFISS-----EAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNN-HIVVVDR---NAFEDMAQLQKLYLSQ-  145 (361)
T ss_dssp             CEECT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECT---TTTTTCTTCCEEECCS-
T ss_pred             CccCh-----hhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCC-cccEECH---HHhCCcccCCEEECCC-
Confidence            55543     35678999999999985 6887766 4677999999999985 4444321   1567789999999998 


Q ss_pred             CCCCcccccc----CCCCCCCeEEEeCCc
Q 018079          310 PKLKVLPDCL----LRTTTLQKLTIWGCP  334 (361)
Q Consensus       310 ~~l~~l~~~l----~~l~~L~~L~l~~c~  334 (361)
                      +.++.+|..+    ..+++|+.|+++++.
T Consensus       146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          146 NQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            5788888544    579999999999884

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.76  E-value=6.4e-08  Score=87.93  Aligned_cols=196  Identities=17%  Similarity=0.194  Sum_probs=112.3

Q ss_pred             CCCccEEEecccCCC--------------------CCchh-hhc--------CccCCeeeecCCCCCCCCCC--CCCCc-
Q 018079          127 PLNVEELWIIFYGGN--------------------IFPKW-LTS--------LANLRELNLSLCFNCEHLPQ--LGKLP-  174 (361)
Q Consensus       127 l~~L~~L~l~~~~~~--------------------~~p~~-~~~--------l~~L~~L~l~~~~~~~~l~~--l~~l~-  174 (361)
                      +++|++|+++++...                    .+|.. +..        +++|+.+++..  .+..++.  +..++ 
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~  125 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN  125 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence            788999999887655                    12222 225        78899988887  5665555  77888 


Q ss_pred             cceEeccccccceeecccccccCC-CCCCCCCC------CC--CCCcccCCCCcc-EEEEcCCccchhhhhhh-------
Q 018079          175 LEKLQLKNLKSVKRVGNEFLGIEE-SSEDGPSS------SS--SSPSVIAFPKLK-SLEIDGMKELEEWNYRI-------  237 (361)
Q Consensus       175 L~~L~l~~~~~l~~l~~~~~~~~~-~~~~~~~~------~~--~~~~l~~~~~L~-~L~L~~~~~l~~~~~~~-------  237 (361)
                      |+.+.+.+ ..+..++...+.... ........      ..  ....+..+.+|+ .+.+.....+.......       
T Consensus       126 L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~  204 (329)
T 3sb4_A          126 LKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI  204 (329)
T ss_dssp             CCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred             cceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence            99999986 345566655442210 00000000      00  011122333343 33333222222111100       


Q ss_pred             c-----c-------ccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCcc-E
Q 018079          238 T-----R-------KENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLS-S  303 (361)
Q Consensus       238 ~-----~-------~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~-~  303 (361)
                      .     +       ......+++|+.+++.++ .++.++... .++++|+++++...  ++.++   .-.+.+|++|+ .
T Consensus       205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~---~~aF~~~~~L~~~  278 (329)
T 3sb4_A          205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIG---QRVFSNCGRLAGT  278 (329)
T ss_dssp             SEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEEC---TTTTTTCTTCCEE
T ss_pred             ceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceeh---HHHhhCChhccEE
Confidence            0     0       000013788999999874 578887764 55889999998762  54444   23566788888 8


Q ss_pred             EEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079          304 LRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       304 L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c  333 (361)
                      +.+.+  .++.++ ..|..+++|+.+++.+.
T Consensus       279 l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          279 LELPA--SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             EEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             EEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence            88876  677776 67788888888888544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.68  E-value=1.1e-07  Score=79.45  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=82.3

Q ss_pred             CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccc
Q 018079          216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHR  294 (361)
Q Consensus       216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~  294 (361)
                      +++|++|++++. .+..++.    ...+..+++|+.|+++++ .++.+ |..+..+++|++|+++++ .++.++.   -.
T Consensus        28 ~~~l~~L~l~~n-~i~~~~~----~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~---~~   97 (192)
T 1w8a_A           28 PLHTTELLLNDN-ELGRISS----DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISN---KM   97 (192)
T ss_dssp             CTTCSEEECCSC-CCCSBCC----SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECS---SS
T ss_pred             CCCCCEEECCCC-cCCccCC----ccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC-cCCccCH---HH
Confidence            348999999884 5555543    223668999999999985 56666 667788999999999985 4555442   13


Q ss_pred             cCCCCCccEEEEecCCCCCcc-ccccCCCCCCCeEEEeCCcc
Q 018079          295 TTDIPRLSSLRIGYCPKLKVL-PDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       295 l~~l~~L~~L~l~~c~~l~~l-~~~l~~l~~L~~L~l~~c~~  335 (361)
                      ++++++|+.|+++++ .++.+ |..+..+++|+.|++++++-
T Consensus        98 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l  138 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             STTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             hcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence            567899999999985 55554 67889999999999998863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=1.1e-07  Score=86.24  Aligned_cols=38  Identities=5%  Similarity=-0.084  Sum_probs=23.5

Q ss_pred             hcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccc
Q 018079           69 QLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGE  106 (361)
Q Consensus        69 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~  106 (361)
                      .+.+|++|+.++++.+.........+.....+..++..
T Consensus       119 aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~  156 (329)
T 3sb4_A          119 AFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG  156 (329)
T ss_dssp             TTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred             HhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence            47889999999998776544444444444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.65  E-value=2.9e-08  Score=99.83  Aligned_cols=83  Identities=20%  Similarity=0.178  Sum_probs=40.1

Q ss_pred             cCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCC
Q 018079          245 IMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTT  324 (361)
Q Consensus       245 ~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~  324 (361)
                      .+++|+.|+++++ .++.+|..+..+++|+.|+++++ .++.+|.    .++++++|+.|++++| .++.+|..+..+++
T Consensus       245 ~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~  317 (727)
T 4b8c_D          245 KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPA----ELGSCFQLKYFYFFDN-MVTTLPWEFGNLCN  317 (727)
T ss_dssp             GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCS----SGGGGTTCSEEECCSS-CCCCCCSSTTSCTT
T ss_pred             CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccCh----hhcCCCCCCEEECCCC-CCCccChhhhcCCC
Confidence            4455555555443 34445544444555555555543 2334443    3344455555555543 34455544555555


Q ss_pred             CCeEEEeCCc
Q 018079          325 LQKLTIWGCP  334 (361)
Q Consensus       325 L~~L~l~~c~  334 (361)
                      |+.|++++|+
T Consensus       318 L~~L~L~~N~  327 (727)
T 4b8c_D          318 LQFLGVEGNP  327 (727)
T ss_dssp             CCCEECTTSC
T ss_pred             ccEEeCCCCc
Confidence            5555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.64  E-value=2.5e-08  Score=100.36  Aligned_cols=37  Identities=16%  Similarity=-0.043  Sum_probs=17.8

Q ss_pred             ccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079          244 SIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       244 ~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                      ..+++|+.|+++++ .++.+|..+..+++|+.|+++++
T Consensus       290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred             cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence            34445555555443 34444444444555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.62  E-value=1.6e-07  Score=78.46  Aligned_cols=48  Identities=23%  Similarity=0.280  Sum_probs=21.7

Q ss_pred             EEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccc
Q 018079          132 ELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKN  182 (361)
Q Consensus       132 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~  182 (361)
                      +++++++....+|..+  .++++.|+++++ .+..+|. +..++ |+.|++++
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~   63 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN   63 (193)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS
T ss_pred             EEEcCCCCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCC
Confidence            4444444444444322  234555555553 3334433 44444 55555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.61  E-value=1.4e-07  Score=78.65  Aligned_cols=120  Identities=17%  Similarity=0.230  Sum_probs=63.1

Q ss_pred             cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC---CCCCc-cceEeccccccceeecccccccCCCCCCCCCC
Q 018079          131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ---LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSS  206 (361)
Q Consensus       131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~---l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~  206 (361)
                      ++++++++....+|..+.  .+++.|+++++ .+..++.   ++.++ |+.|+++++ .++.+.+..             
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------------   73 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNA-------------   73 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTT-------------
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhH-------------
Confidence            456666665555555332  26666666664 4444432   45556 666666653 244433221             


Q ss_pred             CCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeecc
Q 018079          207 SSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFF  280 (361)
Q Consensus       207 ~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~  280 (361)
                            +..+++|++|++++. .+..++.     ..+..+++|+.|+++++ .++.+ |..+..+++|+.|++++
T Consensus        74 ------~~~l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~  135 (192)
T 1w8a_A           74 ------FEGASHIQELQLGEN-KIKEISN-----KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             ------TTTCTTCCEEECCSC-CCCEECS-----SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTT
T ss_pred             ------cCCcccCCEEECCCC-cCCccCH-----HHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCC
Confidence                  335666666666653 3433332     23445666666666663 34433 44455566666666665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.61  E-value=3.5e-07  Score=76.41  Aligned_cols=107  Identities=20%  Similarity=0.297  Sum_probs=83.3

Q ss_pred             CCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccc
Q 018079          216 FPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHR  294 (361)
Q Consensus       216 ~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~  294 (361)
                      .++|++|++.+. .+..++.      .+..+++|+.|+++++ .++.++. .+..+++|++|+++++ .++.++.   -.
T Consensus        30 ~~~l~~L~L~~n-~i~~ip~------~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~---~~   97 (193)
T 2wfh_A           30 PRDVTELYLDGN-QFTLVPK------ELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPP---RT   97 (193)
T ss_dssp             CTTCCEEECCSS-CCCSCCG------GGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCT---TT
T ss_pred             CCCCCEEECCCC-cCchhHH------HhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCH---HH
Confidence            468999999874 5555443      5668999999999985 6777764 4677999999999985 5655552   14


Q ss_pred             cCCCCCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCcc
Q 018079          295 TTDIPRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       295 l~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~  335 (361)
                      +.++++|+.|++++ +.++.+|. .+..+++|+.|+++++|-
T Consensus        98 f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           98 FDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             hCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence            66789999999998 57778884 588899999999998864

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.60  E-value=2.7e-08  Score=81.84  Aligned_cols=121  Identities=17%  Similarity=0.110  Sum_probs=85.5

Q ss_pred             CceeecCCCCcccccCccCCCcc-ccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLT-SLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~-~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|++++| .+..+|. +..+. +|++|++       ..+.+..+.                      .+.++++|+.|
T Consensus        21 L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~L-------s~N~l~~~~----------------------~l~~l~~L~~L   69 (176)
T 1a9n_A           21 DRELDLRGY-KIPVIEN-LGATLDQFDAIDF-------SDNEIRKLD----------------------GFPLLRRLKTL   69 (176)
T ss_dssp             CEEEECTTS-CCCSCCC-GGGGTTCCSEEEC-------CSSCCCEEC----------------------CCCCCSSCCEE
T ss_pred             ceEEEeeCC-CCchhHH-hhhcCCCCCEEEC-------CCCCCCccc----------------------ccccCCCCCEE
Confidence            567888888 7777754 55555 7888888       444333221                      26678899999


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHh-cCCCCCccEEEecccCCCCCch--hhhcCccCCee
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEA-LQPPLNVEELWIIFYGGNIFPK--WLTSLANLREL  156 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L  156 (361)
                      +++.|....                               ++.. +..+++|++|++++|....+|.  .+..+++|+.|
T Consensus        70 ~Ls~N~l~~-------------------------------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           70 LVNNNRICR-------------------------------IGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             ECCSSCCCE-------------------------------ECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             ECCCCcccc-------------------------------cCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence            999887532                               1111 2456889999999988877776  67789999999


Q ss_pred             eecCCCCCCCCCC-----CCCCc-cceEeccccc
Q 018079          157 NLSLCFNCEHLPQ-----LGKLP-LEKLQLKNLK  184 (361)
Q Consensus       157 ~l~~~~~~~~l~~-----l~~l~-L~~L~l~~~~  184 (361)
                      ++++| .+..+|.     +..+| |+.|+++++.
T Consensus       119 ~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          119 CILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             ECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99987 4555554     66788 9999888654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.58  E-value=2.1e-07  Score=76.40  Aligned_cols=120  Identities=22%  Similarity=0.277  Sum_probs=55.1

Q ss_pred             cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCC
Q 018079          131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS  207 (361)
Q Consensus       131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~  207 (361)
                      +.+++.++....+|..  ..++|+.|+++++ .+..++.  +..++ |++|+++++ .++.++...              
T Consensus        10 ~~l~~~~~~l~~~p~~--~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--------------   71 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTG--IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGV--------------   71 (177)
T ss_dssp             TEEECCSSCCSSCCTT--CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTT--------------
T ss_pred             CEEEecCCCCccCCCC--CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhH--------------
Confidence            4555555554445532  2345666666654 3444433  44555 666666543 234333221              


Q ss_pred             CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeecc
Q 018079          208 SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFF  280 (361)
Q Consensus       208 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~  280 (361)
                           +..+++|++|+++++ .+..++.     ..+..+++|+.|+++++ .++.+|..+ ..+++|+.|++++
T Consensus        72 -----~~~l~~L~~L~l~~N-~l~~~~~-----~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           72 -----FDKLTKLTILYLHEN-KLQSLPN-----GVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             -----TTTCTTCCEEECCSS-CCCCCCT-----TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             -----ccCCCccCEEECCCC-CccccCH-----HHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC
Confidence                 224555555555542 2332222     12334555555555553 344444432 3344555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.55  E-value=1.5e-09  Score=91.28  Aligned_cols=54  Identities=22%  Similarity=0.184  Sum_probs=33.2

Q ss_pred             CccEEEeccc--CCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccc
Q 018079          129 NVEELWIIFY--GGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNL  183 (361)
Q Consensus       129 ~L~~L~l~~~--~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~  183 (361)
                      .++...+.+.  ....+|..+..+++|+.|++++| .+..+|.+..++ |+.|+++++
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n   80 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRN   80 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCC
Confidence            3455555543  22235557778888888888875 455555555566 777777653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.52  E-value=1.8e-09  Score=90.76  Aligned_cols=127  Identities=15%  Similarity=0.187  Sum_probs=89.7

Q ss_pred             HHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCC
Q 018079          121 LEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEE  198 (361)
Q Consensus       121 ~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~  198 (361)
                      +..+..+++|++|+++++....+| .+..+++|+.|++++| .+..+|. +..++ |+.|+++++ .++.++ .      
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~------  110 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-G------  110 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEE-ECCCHH-H------
T ss_pred             hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCC-cCCcCC-c------
Confidence            345667889999999998877788 7888999999999997 5667776 44567 999999875 455544 1      


Q ss_pred             CCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-ch----------hc
Q 018079          199 SSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PD----------YL  267 (361)
Q Consensus       199 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~----------~~  267 (361)
                                    +..+++|+.|+++++ .+..++.    ...+..+++|+.|++++++ +... |.          .+
T Consensus       111 --------------~~~l~~L~~L~l~~N-~i~~~~~----~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A          111 --------------IEKLVNLRVLYMSNN-KITNWGE----IDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             --------------HHHHHHSSEEEESEE-ECCCHHH----HHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHH
T ss_pred             --------------cccCCCCCEEECCCC-cCCchhH----HHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHH
Confidence                          447788999999874 4554433    2345678899999998753 3322 21          14


Q ss_pred             cCCCCcceEe
Q 018079          268 LQMTVLQNLR  277 (361)
Q Consensus       268 ~~l~~L~~L~  277 (361)
                      ..+++|+.|+
T Consensus       171 ~~l~~L~~Ld  180 (198)
T 1ds9_A          171 KRLPNLKKLD  180 (198)
T ss_dssp             HHCSSCSEEC
T ss_pred             HhCCCcEEEC
Confidence            4567777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.51  E-value=2.7e-08  Score=81.20  Aligned_cols=40  Identities=15%  Similarity=0.125  Sum_probs=27.0

Q ss_pred             CCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCccchh
Q 018079          299 PRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPLLEN  338 (361)
Q Consensus       299 ~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~  338 (361)
                      ++|++|++++|+++++-. ..+.++++|+.|++++|+.+++
T Consensus       114 ~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          114 KSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred             CCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence            356677777777766644 3455677777777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.50  E-value=9.7e-07  Score=72.38  Aligned_cols=109  Identities=24%  Similarity=0.328  Sum_probs=83.7

Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCccccc
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILEDH  293 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L  293 (361)
                      .+++|+.|+++++ .+..++.     ..+..+++|+.|+++++ .++.++.. +..+++|+.|+++++ .++.+|.   -
T Consensus        26 ~~~~l~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---~   94 (177)
T 2o6r_A           26 IPSSATRLELESN-KLQSLPH-----GVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN---G   94 (177)
T ss_dssp             CCTTCSEEECCSS-CCCCCCT-----TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---T
T ss_pred             CCCCCcEEEeCCC-cccEeCH-----HHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH---H
Confidence            3578999999984 4554443     34567899999999985 67777765 477999999999985 5665553   1


Q ss_pred             ccCCCCCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCcc
Q 018079          294 RTTDIPRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       294 ~l~~l~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~~  335 (361)
                      .+.++++|+.|+++++ .++.+|. .+..+++|+.|++++++-
T Consensus        95 ~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           95 VFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence            3466899999999985 7778885 458899999999999863

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.28  E-value=8.7e-07  Score=81.40  Aligned_cols=165  Identities=15%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             hHHHHHhcCCCCCccEEEecccCC----------CCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEecccccc
Q 018079          117 DKQLLEALQPPLNVEELWIIFYGG----------NIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKS  185 (361)
Q Consensus       117 ~~~~~~~l~~l~~L~~L~l~~~~~----------~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~  185 (361)
                      ...+.+++..+++|+.|.+.+...          ..+..++..+++|+.|.++++... .++.+ .++ |+.|.+..|. 
T Consensus       128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~-  204 (362)
T 2ra8_A          128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGG-  204 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSB-
T ss_pred             HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCC-
Confidence            334445556678999998865321          124455668889999999886333 33443 367 9999987543 


Q ss_pred             ceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCcc-------chhhhhhhccccccccCCCccEEEEecCC
Q 018079          186 VKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKE-------LEEWNYRITRKENISIMPRLSSLEVSSCN  258 (361)
Q Consensus       186 l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~-------l~~~~~~~~~~~~~~~l~~L~~L~l~~c~  258 (361)
                      +..-......                 ...+|+|+.|+|+...+       +..+..    .-....+|+|+.|.+.+|.
T Consensus       205 l~~~~l~~l~-----------------~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~----~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          205 LPDSVVEDIL-----------------GSDLPNLEKLVLYVGVEDYGFDGDMNVFRP----LFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             CCHHHHHHHH-----------------HSBCTTCCEEEEECBCGGGTCCSCGGGTGG----GSCTTTCTTCCEEEEESCT
T ss_pred             CChHHHHHHH-----------------HccCCCCcEEEEeccccccccchhHHHHHH----HHhcCCCCCcCEEeCCCCC
Confidence            3221111111                 12689999999863211       111111    0111358899999998874


Q ss_pred             CCCccchhc---cCCCCcceEeeccCCCccc-----CCcccccccCCCCCccEEEEecCC
Q 018079          259 KLKALPDYL---LQMTVLQNLRIFFCENMEE-----LPILEDHRTTDIPRLSSLRIGYCP  310 (361)
Q Consensus       259 ~l~~l~~~~---~~l~~L~~L~l~~c~~l~~-----lp~L~~L~l~~l~~L~~L~l~~c~  310 (361)
                      .....+..+   ..+++|++|+++.+ .++.     ++.    .+..+++|+.|++++|.
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~----~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLD----HVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHT----THHHHTTCSEEECCSBB
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHh----hcccCCcceEEECCCCc
Confidence            322222222   34788899998763 4433     111    12346788888888763

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.26  E-value=9.1e-07  Score=72.51  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ   82 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~   82 (361)
                      .++++++ .+..+|.++.  .+|++|++       ..+.+..+.                    +..+.++++|+.|+++
T Consensus        16 ~l~~~~n-~l~~iP~~~~--~~L~~L~L-------s~N~l~~~~--------------------~~~~~~l~~L~~L~Ls   65 (174)
T 2r9u_A           16 LVNCQNI-RLASVPAGIP--TDKQRLWL-------NNNQITKLE--------------------PGVFDHLVNLQQLYFN   65 (174)
T ss_dssp             EEECCSS-CCSSCCSCCC--TTCSEEEC-------CSSCCCCCC--------------------TTTTTTCTTCCEEECC
T ss_pred             EEEeCCC-CCCccCCCcC--CCCcEEEe-------CCCCccccC--------------------HHHhcCCcCCCEEECC
Confidence            5666766 6777776654  66777777       444444331                    0125566677777777


Q ss_pred             ecCCCCCCcchhhhhhcccccccccccccccchhhHHHH-HhcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecC
Q 018079           83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLL-EALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSL  160 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~  160 (361)
                      .|....                               ++ ..+..+++|++|+++++....+|.. +..+++|+.|++++
T Consensus        66 ~N~l~~-------------------------------i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  114 (174)
T 2r9u_A           66 SNKLTA-------------------------------IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN  114 (174)
T ss_dssp             SSCCCC-------------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CCCCCc-------------------------------cChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence            665422                               11 1235566677777777666555543 55666777777766


Q ss_pred             C
Q 018079          161 C  161 (361)
Q Consensus       161 ~  161 (361)
                      +
T Consensus       115 N  115 (174)
T 2r9u_A          115 N  115 (174)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.20  E-value=1.4e-06  Score=71.12  Aligned_cols=100  Identities=18%  Similarity=0.115  Sum_probs=66.2

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL   81 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l   81 (361)
                      ++++++++ .+..+|.++.  .+|++|++       ..+.+..+.                    +..+.++++|+.|++
T Consensus        12 ~~l~~s~n-~l~~ip~~~~--~~l~~L~L-------~~N~i~~~~--------------------~~~~~~l~~L~~L~L   61 (170)
T 3g39_A           12 TTVDCSGK-SLASVPTGIP--TTTQVLYL-------YDNQITKLE--------------------PGVFDRLTQLTRLDL   61 (170)
T ss_dssp             TEEECTTS-CCSSCCSCCC--TTCSEEEC-------CSSCCCCCC--------------------TTTTTTCTTCSEEEC
T ss_pred             CEEEeCCC-CcCccCccCC--CCCcEEEc-------CCCcCCccC--------------------hhhhcCcccCCEEEC
Confidence            56788877 7888887664  77888888       455554432                    113567778888888


Q ss_pred             EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch-hhhcCccCCeeeecC
Q 018079           82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK-WLTSLANLRELNLSL  160 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~l~~L~~L~l~~  160 (361)
                      +.|.....                              ....+..+++|++|+++++....+|. .+..+++|+.|++++
T Consensus        62 s~N~l~~l------------------------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  111 (170)
T 3g39_A           62 DNNQLTVL------------------------------PAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLN  111 (170)
T ss_dssp             CSSCCCCC------------------------------CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcCcc------------------------------ChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCC
Confidence            87764320                              01234667778888888777666655 356777788888777


Q ss_pred             C
Q 018079          161 C  161 (361)
Q Consensus       161 ~  161 (361)
                      +
T Consensus       112 N  112 (170)
T 3g39_A          112 N  112 (170)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.20  E-value=1.5e-06  Score=70.77  Aligned_cols=18  Identities=22%  Similarity=0.229  Sum_probs=10.7

Q ss_pred             CCCCccEEEEecCCCCCc
Q 018079          297 DIPRLSSLRIGYCPKLKV  314 (361)
Q Consensus       297 ~l~~L~~L~l~~c~~l~~  314 (361)
                      .+++|++|++++|+.+++
T Consensus       137 ~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          137 HFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             GCTTCCEEEEESCTTCCC
T ss_pred             cCCCCCEEECCCCCCCCc
Confidence            355566666666666655

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.18  E-value=3.2e-05  Score=72.00  Aligned_cols=82  Identities=10%  Similarity=0.099  Sum_probs=41.0

Q ss_pred             ccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-ccc
Q 018079          242 NISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCL  319 (361)
Q Consensus       242 ~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l  319 (361)
                      .+.+|++|+.+.+..  .++.++... .+|++|+.+.+..  +++.++   .-.+.++ +|+.+.+.++ ....++ ..+
T Consensus       295 aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~---~~aF~~~-~L~~l~l~~n-~~~~l~~~~F  365 (401)
T 4fdw_A          295 CLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQIN---FSAFNNT-GIKEVKVEGT-TPPQVFEKVW  365 (401)
T ss_dssp             TTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEEC---TTSSSSS-CCCEEEECCS-SCCBCCCSSC
T ss_pred             HhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEc---HHhCCCC-CCCEEEEcCC-CCcccccccc
Confidence            445566666666642  355554433 3356666666643  222222   1234446 6667766653 333333 344


Q ss_pred             CCCC-CCCeEEEeC
Q 018079          320 LRTT-TLQKLTIWG  332 (361)
Q Consensus       320 ~~l~-~L~~L~l~~  332 (361)
                      ..++ +++.|.+-.
T Consensus       366 ~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          366 YGFPDDITVIRVPA  379 (401)
T ss_dssp             CCSCTTCCEEEECG
T ss_pred             cCCCCCccEEEeCH
Confidence            4453 456666644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.16  E-value=7.7e-06  Score=66.90  Aligned_cols=100  Identities=16%  Similarity=0.243  Sum_probs=63.3

Q ss_pred             cEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCC
Q 018079          220 KSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDI  298 (361)
Q Consensus       220 ~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l  298 (361)
                      +.+++++ ..+..++.      .  ..++|+.|+++++ .++.+ |..+..+++|+.|+++++ .++.+|.   -.+.++
T Consensus        15 ~~l~~~~-n~l~~iP~------~--~~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~~~l   80 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPA------G--IPTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPT---GVFDKL   80 (174)
T ss_dssp             SEEECCS-SCCSSCCS------C--CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT---TTTTTC
T ss_pred             cEEEeCC-CCCCccCC------C--cCCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccCh---hHhCCc
Confidence            4555554 24444443      1  1367778877774 56655 445666777888888774 5555553   123557


Q ss_pred             CCccEEEEecCCCCCcccc-ccCCCCCCCeEEEeCCc
Q 018079          299 PRLSSLRIGYCPKLKVLPD-CLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       299 ~~L~~L~l~~c~~l~~l~~-~l~~l~~L~~L~l~~c~  334 (361)
                      ++|+.|++++ +.++.+|. .+..+++|+.|++++++
T Consensus        81 ~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           81 TQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             chhhEEECCC-CccceeCHHHhccccCCCEEEeCCCC
Confidence            7788888877 46667764 37777888888887775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.15  E-value=4.3e-05  Score=71.14  Aligned_cols=172  Identities=12%  Similarity=0.143  Sum_probs=108.9

Q ss_pred             hcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCC
Q 018079          123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEES  199 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~  199 (361)
                      +...+.+|+.+++.++....++.......+|+.+.+..  .+..++.  +..++ |+.+.+.+  +++.++...+     
T Consensus       175 aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF-----  245 (401)
T 4fdw_A          175 IFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAF-----  245 (401)
T ss_dssp             TTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTT-----
T ss_pred             HhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccccc-----
Confidence            44566677777776665555555444456677777653  2444443  55666 77777753  3555555443     


Q ss_pred             CCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCC----CCccchh-ccCCCCcc
Q 018079          200 SEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNK----LKALPDY-LLQMTVLQ  274 (361)
Q Consensus       200 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~----l~~l~~~-~~~l~~L~  274 (361)
                                    .+ .+|+.+.+..  ++..+..     ..+.++++|+.+.+.+...    ...++.. +.+|++|+
T Consensus       246 --------------~~-~~L~~i~lp~--~i~~I~~-----~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~  303 (401)
T 4fdw_A          246 --------------RE-SGITTVKLPN--GVTNIAS-----RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLA  303 (401)
T ss_dssp             --------------TT-CCCSEEEEET--TCCEECT-----TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCC
T ss_pred             --------------cc-CCccEEEeCC--CccEECh-----hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCC
Confidence                          23 5778887743  3443332     4566788899998876321    1135443 45588888


Q ss_pred             eEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079          275 NLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       275 ~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c  333 (361)
                      .+.+..  .++.++   .-.+.+|++|+.+.+.+  .++.++ ..|.++ +|+.+++.++
T Consensus       304 ~l~l~~--~i~~I~---~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          304 RFEIPE--SIRILG---QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             EECCCT--TCCEEC---TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred             eEEeCC--ceEEEh---hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence            888874  344433   23566789999999954  577887 678888 9999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.15  E-value=5.9e-07  Score=82.53  Aligned_cols=135  Identities=22%  Similarity=0.194  Sum_probs=85.5

Q ss_pred             HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCC--CCCC--CCCc-cceEecccccc-------ceee
Q 018079          122 EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEH--LPQL--GKLP-LEKLQLKNLKS-------VKRV  189 (361)
Q Consensus       122 ~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~--l~~l--~~l~-L~~L~l~~~~~-------l~~l  189 (361)
                      ..+..+|+|+.|.+.++....++. + .+++|++|++..|. +..  +..+  ..+| |+.|+++.+.+       +..+
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l  242 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF  242 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred             HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence            345667899999999876555655 3 37899999998763 331  1112  3688 99998853211       1111


Q ss_pred             cccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCc-----cc
Q 018079          190 GNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-----LP  264 (361)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~  264 (361)
                      ...+.                  ...||+|++|++.+|.-.......+   .....+|+|+.|+++. +.+..     ++
T Consensus       243 ~~~l~------------------~~~~p~Lr~L~L~~~~i~~~~~~~l---a~a~~~~~L~~LdLs~-n~L~d~G~~~L~  300 (362)
T 2ra8_A          243 RPLFS------------------KDRFPNLKWLGIVDAEEQNVVVEMF---LESDILPQLETMDISA-GVLTDEGARLLL  300 (362)
T ss_dssp             GGGSC------------------TTTCTTCCEEEEESCTTHHHHHHHH---HHCSSGGGCSEEECCS-SCCBHHHHHHHH
T ss_pred             HHHHh------------------cCCCCCcCEEeCCCCCCchHHHHHH---HhCccCCCCCEEECCC-CCCChHHHHHHH
Confidence            11110                  1268999999998875433222111   1123589999999976 45654     34


Q ss_pred             hhccCCCCcceEeeccC
Q 018079          265 DYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       265 ~~~~~l~~L~~L~l~~c  281 (361)
                      ..+..+++|+.|++++|
T Consensus       301 ~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          301 DHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TTHHHHTTCSEEECCSB
T ss_pred             hhcccCCcceEEECCCC
Confidence            44456899999999886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.09  E-value=1.1e-05  Score=65.62  Aligned_cols=49  Identities=18%  Similarity=0.103  Sum_probs=22.2

Q ss_pred             cEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccc
Q 018079          131 EELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKN  182 (361)
Q Consensus       131 ~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~  182 (361)
                      +.++++++....+|..+  .++++.|+++++ .+..+++  +..++ |+.|++++
T Consensus        12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~   63 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDN   63 (170)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCS
T ss_pred             CEEEeCCCCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCC
Confidence            44555554444444432  244555555553 3333322  44444 55555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.90  E-value=4.4e-05  Score=69.46  Aligned_cols=98  Identities=21%  Similarity=0.233  Sum_probs=65.7

Q ss_pred             EEEeccc-CCCCCchhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCC
Q 018079          132 ELWIIFY-GGNIFPKWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS  207 (361)
Q Consensus       132 ~L~l~~~-~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~  207 (361)
                      .++..+. ....+|. +..+.+|+.|++++++.+..++.  +..++ |+.|+++++ .++.+++..              
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~--------------   75 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDA--------------   75 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTG--------------
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHH--------------
Confidence            4566665 5556777 77788888888886446776664  77788 888888864 567766543              


Q ss_pred             CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecC
Q 018079          208 SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSC  257 (361)
Q Consensus       208 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  257 (361)
                           +..+++|+.|+|++ ..+..++.     ..+..++ |+.|++.++
T Consensus        76 -----~~~l~~L~~L~l~~-N~l~~~~~-----~~~~~~~-L~~l~l~~N  113 (347)
T 2ifg_A           76 -----FHFTPRLSRLNLSF-NALESLSW-----KTVQGLS-LQELVLSGN  113 (347)
T ss_dssp             -----GGSCSCCCEEECCS-SCCSCCCS-----TTTCSCC-CCEEECCSS
T ss_pred             -----hcCCcCCCEEeCCC-CccceeCH-----HHcccCC-ceEEEeeCC
Confidence                 33678888888887 45555543     2223333 888888763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.81  E-value=3.5e-06  Score=77.81  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=22.7

Q ss_pred             HHHhcCCC-CCccEEEecccCCCC--CchhhhcCccCCeeeecCC
Q 018079          120 LLEALQPP-LNVEELWIIFYGGNI--FPKWLTSLANLRELNLSLC  161 (361)
Q Consensus       120 ~~~~l~~l-~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~  161 (361)
                      +...+... ++|++|++++|....  .......+++|+.|++++|
T Consensus        92 l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n  136 (372)
T 3un9_A           92 VAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN  136 (372)
T ss_dssp             HHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS
T ss_pred             HHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC
Confidence            33444433 577777777765432  1111224556777777775

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.68  E-value=0.00013  Score=66.21  Aligned_cols=83  Identities=24%  Similarity=0.234  Sum_probs=35.6

Q ss_pred             cCCCccEEEEecCCCCCccch-hccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccc-cCCC
Q 018079          245 IMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDC-LLRT  322 (361)
Q Consensus       245 ~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~-l~~l  322 (361)
                      .+++|+.|++++++.++.++. .+..+++|+.|+++++ .++.++.   -.+.++++|+.|++++ ++++.+|.. +..+
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~---~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~  103 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP---DAFHFTPRLSRLNLSF-NALESLSWKTVQGL  103 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT---TGGGSCSCCCEEECCS-SCCSCCCSTTTCSC
T ss_pred             CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH---HHhcCCcCCCEEeCCC-CccceeCHHHcccC
Confidence            344455555543334444442 2344555555555543 3333221   0233445555555554 344444422 2222


Q ss_pred             CCCCeEEEeCC
Q 018079          323 TTLQKLTIWGC  333 (361)
Q Consensus       323 ~~L~~L~l~~c  333 (361)
                      + |+.|++.++
T Consensus       104 ~-L~~l~l~~N  113 (347)
T 2ifg_A          104 S-LQELVLSGN  113 (347)
T ss_dssp             C-CCEEECCSS
T ss_pred             C-ceEEEeeCC
Confidence            2 555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.52  E-value=0.00064  Score=62.94  Aligned_cols=82  Identities=13%  Similarity=0.177  Sum_probs=55.5

Q ss_pred             ccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-ccc
Q 018079          242 NISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCL  319 (361)
Q Consensus       242 ~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l  319 (361)
                      .+..+.+|+.+.+.+  .++.++... .++.+|+++.+..  .++.++   .-.+.+|.+|+.+.+..  .++.++ ..|
T Consensus       292 ~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~---~~aF~~c~~L~~i~lp~--~l~~I~~~aF  362 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIG---KRSFRGCTSLSNINFPL--SLRKIGANAF  362 (394)
T ss_dssp             TTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---TTTTTTCTTCCEECCCT--TCCEECTTTB
T ss_pred             ccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEh---HHhccCCCCCCEEEECc--cccEehHHHh
Confidence            345677888888754  466666543 4578888888753  233332   23566688888888854  377777 567


Q ss_pred             CCCCCCCeEEEeC
Q 018079          320 LRTTTLQKLTIWG  332 (361)
Q Consensus       320 ~~l~~L~~L~l~~  332 (361)
                      ..+++|+.+++..
T Consensus       363 ~~C~~L~~i~lp~  375 (394)
T 4fs7_A          363 QGCINLKKVELPK  375 (394)
T ss_dssp             TTCTTCCEEEEEG
T ss_pred             hCCCCCCEEEECC
Confidence            8888999988864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.42  E-value=2.3e-05  Score=72.29  Aligned_cols=156  Identities=17%  Similarity=0.118  Sum_probs=86.2

Q ss_pred             CceeecCCCCcccccC-----ccCC-CccccceecceeeecCCCCCccccc----c-eeceeEEcCCCCCCChH-HHHHh
Q 018079            1 MRSLLNFGTNSLKYMP-----IGIS-KLTSLRRLDKFVVGGGVDGSNTGRL----Q-LRGECSIEGLCNVSHVD-EAERL   68 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP-----~~i~-~L~~L~~L~l~~~~~~~~~~~l~~L----~-L~~~l~l~~l~~~~~~~-~~~~~   68 (361)
                      |++|++++| .+....     ..+. ...+|++|++.++...  ...+..+    . ++ .+.+.+.. +.+.. .....
T Consensus        74 L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~--~~~~~~l~~~L~~L~-~L~Ls~n~-l~~~~~~~L~~  148 (372)
T 3un9_A           74 LRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLD--PAGLRTLLPVFLRAR-KLGLQLNS-LGPEACKDLRD  148 (372)
T ss_dssp             CCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC--HHHHHHTHHHHHTEE-EEECCSSC-CCHHHHHHHHH
T ss_pred             CCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCC--HHHHHHHHHHHHhcc-HhhcCCCC-CCHHHHHHHHH
Confidence            567888888 555422     2122 2267888888444322  0111111    1 22 33333321 11111 22222


Q ss_pred             hc-CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-----
Q 018079           69 QL-SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-----  142 (361)
Q Consensus        69 ~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----  142 (361)
                      .+ ...++|++|++++|...+                          .....+...+...++|++|++++|....     
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~--------------------------~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~  202 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTA--------------------------AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLEL  202 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHH--------------------------HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHH
T ss_pred             HHHhcCCccceeeCCCCCCCh--------------------------HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHH
Confidence            23 346678888887776421                          0033456667788899999999987533     


Q ss_pred             CchhhhcCccCCeeeecCCCCCCCCC-----C-CCCCc-cceEeccccccceee
Q 018079          143 FPKWLTSLANLRELNLSLCFNCEHLP-----Q-LGKLP-LEKLQLKNLKSVKRV  189 (361)
Q Consensus       143 ~p~~~~~l~~L~~L~l~~~~~~~~l~-----~-l~~l~-L~~L~l~~~~~l~~l  189 (361)
                      ++..+...++|+.|++++| .++...     . +...+ |++|+++++. +...
T Consensus       203 L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~  254 (372)
T 3un9_A          203 LAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE-LSSE  254 (372)
T ss_dssp             HHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred             HHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence            3445567789999999997 444221     1 33457 9999999754 4443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.12  E-value=0.005  Score=56.83  Aligned_cols=106  Identities=17%  Similarity=0.257  Sum_probs=72.9

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILE  291 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~  291 (361)
                      +.++.+|+.+.+..  ....+.     ...+..+++|+.+.+..  .++.++... .+|.+|+++.+..  .++.+.   
T Consensus       261 F~~c~~L~~i~lp~--~~~~I~-----~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~---  326 (394)
T 4gt6_A          261 FDSCAYLASVKMPD--SVVSIG-----TGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQIL---  326 (394)
T ss_dssp             TTTCSSCCEEECCT--TCCEEC-----TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEEC---
T ss_pred             eeecccccEEeccc--ccceec-----CcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEeh---
Confidence            44667788887753  122221     23456788899888853  567777654 4488999988864  233332   


Q ss_pred             ccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079          292 DHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       292 ~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~  334 (361)
                      .-.+.+|.+|+.+.+-.  .++.++ ..|.++++|+.+++.+..
T Consensus       327 ~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          327 DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence            23567799999999953  577887 678999999999998764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.08  E-value=0.0029  Score=58.43  Aligned_cols=100  Identities=11%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILE  291 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~  291 (361)
                      +..+.+|+.+.+..  .++.+.     ...+.++.+|+.+.+..  .++.++... .+|.+|+++.+..  .++.++   
T Consensus       293 F~~~~~L~~i~l~~--~i~~I~-----~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~---  358 (394)
T 4fs7_A          293 FYGCSSLTEVKLLD--SVKFIG-----EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIG---  358 (394)
T ss_dssp             TTTCTTCCEEEECT--TCCEEC-----TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEEC---
T ss_pred             cccccccccccccc--ccceec-----hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEeh---
Confidence            44678888888854  344333     24567889999999854  477776654 5589999998864  233333   


Q ss_pred             ccccCCCCCccEEEEecCCCCCccccccCCCCCCCeE
Q 018079          292 DHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKL  328 (361)
Q Consensus       292 ~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L  328 (361)
                      .-.+.+|++|+.+++..  .++.+...+.++++|+.+
T Consensus       359 ~~aF~~C~~L~~i~lp~--~~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPK--RLEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTBTTCTTCCEEEEEG--GGGGGGGGBCTTCEEEEE
T ss_pred             HHHhhCCCCCCEEEECC--CCEEhhheecCCCCCcEE
Confidence            23677799999999964  355555567777777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.02  E-value=0.00027  Score=58.18  Aligned_cols=126  Identities=17%  Similarity=0.073  Sum_probs=82.0

Q ss_pred             CCChHHHHHhhcCCCCCCceEEEEec-CCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecc
Q 018079           59 VSHVDEAERLQLSNKKNLLRLHLQFG-GKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIF  137 (361)
Q Consensus        59 ~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  137 (361)
                      ..+..+.+...+...++|++|+++.| ...+                          +-...+.+.+...++|++|++++
T Consensus        21 ~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~--------------------------~g~~~l~~~L~~~~~L~~L~Ls~   74 (185)
T 1io0_A           21 STDVEETLKRIQNNDPDLEEVNLNNIMNIPV--------------------------PTLKACAEALKTNTYVKKFSIVG   74 (185)
T ss_dssp             CCCHHHHHHHHHTTCTTCCEEECTTCTTCCH--------------------------HHHHHHHHHHTTCCSCCEEECTT
T ss_pred             ccHHHHHHHHHHhcCCCCCEEEecCCCCCCH--------------------------HHHHHHHHHHHhCCCcCEEECcC
Confidence            34556777778899999999999987 5432                          11445677788889999999999


Q ss_pred             cCCCC-----CchhhhcCccCCeeeecCCCCCCC-----CC-CCCCCc-cceEec--cccccceeecccccccCCCCCCC
Q 018079          138 YGGNI-----FPKWLTSLANLRELNLSLCFNCEH-----LP-QLGKLP-LEKLQL--KNLKSVKRVGNEFLGIEESSEDG  203 (361)
Q Consensus       138 ~~~~~-----~p~~~~~l~~L~~L~l~~~~~~~~-----l~-~l~~l~-L~~L~l--~~~~~l~~l~~~~~~~~~~~~~~  203 (361)
                      |....     +...+...++|+.|++++| .+++     +. .+...+ |++|++  ++ ..+..-........      
T Consensus        75 n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~------  146 (185)
T 1io0_A           75 TRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANM------  146 (185)
T ss_dssp             SCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHH------
T ss_pred             CCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHH------
Confidence            87543     3334456678999999987 4442     11 144556 889999  54 33443221111110      


Q ss_pred             CCCCCCCCcccCCCCccEEEEcCC
Q 018079          204 PSSSSSSPSVIAFPKLKSLEIDGM  227 (361)
Q Consensus       204 ~~~~~~~~~l~~~~~L~~L~L~~~  227 (361)
                               +...++|++|+++++
T Consensus       147 ---------L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          147 ---------LEKNTTLLKFGYHFT  161 (185)
T ss_dssp             ---------HHHCSSCCEEECCCS
T ss_pred             ---------HHhCCCcCEEeccCC
Confidence                     335578888888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.41  E-value=0.0028  Score=52.02  Aligned_cols=113  Identities=16%  Similarity=0.127  Sum_probs=75.0

Q ss_pred             ccCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCc-----cchhccCCCCcceEeeccCCCccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKA-----LPDYLLQMTVLQNLRIFFCENMEE  286 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~c~~l~~  286 (361)
                      +...++|++|+++++..+.+... .+  ...+...++|++|++++|. +.+     +...+...++|++|++++| .+..
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l--~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~  107 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKAC--AEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESN-FISG  107 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHH--HHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHH--HHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence            44678999999998734543221 11  1244567899999999864 542     3334455789999999986 3332


Q ss_pred             -----CCcccccccCCCCCccEEEE--ecCCCCCc-----cccccCCCCCCCeEEEeCCc
Q 018079          287 -----LPILEDHRTTDIPRLSSLRI--GYCPKLKV-----LPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       287 -----lp~L~~L~l~~l~~L~~L~l--~~c~~l~~-----l~~~l~~l~~L~~L~l~~c~  334 (361)
                           +..    .+...++|++|++  .++ .+..     +...+...++|++|++++|.
T Consensus       108 ~g~~~l~~----~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          108 SGILALVE----ALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHH----GGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHH----HHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                 111    2344678999999  554 5544     44566777899999999885

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.27  E-value=0.0023  Score=55.80  Aligned_cols=82  Identities=20%  Similarity=0.193  Sum_probs=52.6

Q ss_pred             ccCCCccEEEEecCCCCCccc---hhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc----
Q 018079          244 SIMPRLSSLEVSSCNKLKALP---DYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP----  316 (361)
Q Consensus       244 ~~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~----  316 (361)
                      ..+++|+.|++++ +.+..++   ..+..+++|+.|++++ +.++.+..+..+  ..+ +|++|++.+++.-..+|    
T Consensus       167 ~~l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~l~~l--~~l-~L~~L~L~~Npl~~~~~~~~~  241 (267)
T 3rw6_A          167 ENIPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKI--KGL-KLEELWLDGNSLCDTFRDQST  241 (267)
T ss_dssp             HHCTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGGGGGG--TTS-CCSEEECTTSTTGGGCSSHHH
T ss_pred             hhCCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCchhhhhc--ccC-CcceEEccCCcCccccCcchh
Confidence            3688899998887 4566543   4556688888888887 455554433222  223 78888888866544343    


Q ss_pred             ---cccCCCCCCCeEEE
Q 018079          317 ---DCLLRTTTLQKLTI  330 (361)
Q Consensus       317 ---~~l~~l~~L~~L~l  330 (361)
                         ..+..+|+|+.|+-
T Consensus       242 y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          242 YISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHCTTCCEESS
T ss_pred             HHHHHHHHCcccCeECC
Confidence               23566788877653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.07  E-value=0.17  Score=46.36  Aligned_cols=81  Identities=16%  Similarity=0.241  Sum_probs=54.5

Q ss_pred             ccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-ccc
Q 018079          242 NISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCL  319 (361)
Q Consensus       242 ~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l  319 (361)
                      .+..+.+|+.+.+.+  .+..+... +.++++|+.+.+..  .++.++   .-.+.+|.+|+.+.+-.  .++.+. ..|
T Consensus       260 aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~---~~aF~~c~~L~~i~lp~--~v~~I~~~aF  330 (394)
T 4gt6_A          260 AFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELP---ESVFAGCISLKSIDIPE--GITQILDDAF  330 (394)
T ss_dssp             TTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEEC---TTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred             eeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccC---ceeecCCCCcCEEEeCC--cccEehHhHh
Confidence            455677777777743  33455443 34477888877753  333333   23566789999999854  577787 578


Q ss_pred             CCCCCCCeEEEe
Q 018079          320 LRTTTLQKLTIW  331 (361)
Q Consensus       320 ~~l~~L~~L~l~  331 (361)
                      ..+.+|+.+.+.
T Consensus       331 ~~C~~L~~i~ip  342 (394)
T 4gt6_A          331 AGCEQLERIAIP  342 (394)
T ss_dssp             TTCTTCCEEEEC
T ss_pred             hCCCCCCEEEEC
Confidence            899999999985

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.35  E-value=0.0035  Score=54.56  Aligned_cols=68  Identities=21%  Similarity=0.092  Sum_probs=40.0

Q ss_pred             CCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcC
Q 018079           71 SNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSL  150 (361)
Q Consensus        71 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l  150 (361)
                      .++++|+.|+++.|....                            ...+...+..+++|++|++++|....+. .+..+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~----------------------------l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l  217 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYR----------------------------LDDMSSIVQKAPNLKILNLSGNELKSER-ELDKI  217 (267)
T ss_dssp             HHCTTCCEEECTTSCCCC----------------------------CGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGG
T ss_pred             hhCCCCCEEECCCCCCCC----------------------------CccchhHHhhCCCCCEEECCCCccCCch-hhhhc
Confidence            457778888888776543                            2222233345677777777777665442 23333


Q ss_pred             c--cCCeeeecCCCCCCCC
Q 018079          151 A--NLRELNLSLCFNCEHL  167 (361)
Q Consensus       151 ~--~L~~L~l~~~~~~~~l  167 (361)
                      .  +|+.|++.+++-...+
T Consensus       218 ~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          218 KGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             TTSCCSEEECTTSTTGGGC
T ss_pred             ccCCcceEEccCCcCcccc
Confidence            3  7777777776543333

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.08  E-value=0.66  Score=42.02  Aligned_cols=102  Identities=18%  Similarity=0.181  Sum_probs=52.3

Q ss_pred             CCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCcccCCccccc
Q 018079          215 AFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENMEELPILEDH  293 (361)
Q Consensus       215 ~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~lp~L~~L  293 (361)
                      ++.+|+.+.+..  .++.+..     ..+..+.+|+.+.+..  .++.++... ..+++|+.+.+.+. .++.++   .-
T Consensus       238 ~~~~L~~i~lp~--~v~~I~~-----~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~-~i~~I~---~~  304 (379)
T 4h09_A          238 GMKALDEIAIPK--NVTSIGS-----FLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNS-AIETLE---PR  304 (379)
T ss_dssp             TCSSCCEEEECT--TCCEECT-----TTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCT-TCCEEC---TT
T ss_pred             CCccceEEEcCC--CccEeCc-----cccceeehhccccccc--cceecccccccccccccccccccc-ccceeh---hh
Confidence            456666666643  2222221     2344566666666643  355555433 34666766666541 222222   12


Q ss_pred             ccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEe
Q 018079          294 RTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIW  331 (361)
Q Consensus       294 ~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~  331 (361)
                      .+.+|.+|+.+.+-.  .++.++ ..|.++.+|+.+.+.
T Consensus       305 aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          305 VFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred             hhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence            344566666666632  355555 445666666666653

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.32  E-value=0.83  Score=41.33  Aligned_cols=81  Identities=12%  Similarity=0.162  Sum_probs=42.2

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILE  291 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~  291 (361)
                      +..+.+|+.+.+..  ++..+..     ..+.++++|+.+.+.+ ..++.++.. +.+|.+|+++.+..  .++.++   
T Consensus       259 F~~~~~l~~i~l~~--~i~~i~~-----~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~---  325 (379)
T 4h09_A          259 LQNCTALKTLNFYA--KVKTVPY-----LLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPT--ALKTIQ---  325 (379)
T ss_dssp             TTTCTTCCEEEECC--CCSEECT-----TTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEEC---
T ss_pred             cceeehhccccccc--cceeccc-----cccccccccccccccc-cccceehhhhhcCCCCCCEEEcCc--cccEEH---
Confidence            33556677766643  2332221     3445677777777754 245556544 34467777776642  222222   


Q ss_pred             ccccCCCCCccEEEE
Q 018079          292 DHRTTDIPRLSSLRI  306 (361)
Q Consensus       292 ~L~l~~l~~L~~L~l  306 (361)
                      .-.+.+|++|+.+.+
T Consensus       326 ~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          326 VYAFKNCKALSTISY  340 (379)
T ss_dssp             TTTTTTCTTCCCCCC
T ss_pred             HHHhhCCCCCCEEEE
Confidence            123445666666655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=86.32  E-value=0.44  Score=36.18  Aligned_cols=34  Identities=21%  Similarity=0.218  Sum_probs=19.0

Q ss_pred             CccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079          300 RLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       300 ~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~  334 (361)
                      +|+.|++++ ++++.++ ..+..+++|+.|++.++|
T Consensus        32 ~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence            455555555 4555555 334556666666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.71
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.6
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.46
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.42
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.35
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.32
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.17
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.16
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.14
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.05
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.8
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.37
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.21
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.2
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.18
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.38
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.39
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.33
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	93.86
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.81

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.5e-16  Score=144.20  Aligned_cols=279  Identities=17%  Similarity=0.174  Sum_probs=151.8

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-eeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-LRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      |++|+++++ ++..+ ++++.+++|++|++.++... +...+..++ |+ .+.+.+..- ...     ..++++++|+.|
T Consensus        46 l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~N~l~-~l~~l~~L~~L~-~L~L~~n~i-~~i-----~~l~~l~~L~~L  115 (384)
T d2omza2          46 VTTLQADRL-GIKSI-DGVEYLNNLTQINFSNNQLT-DITPLKNLTKLV-DILMNNNQI-ADI-----TPLANLTNLTGL  115 (384)
T ss_dssp             CCEEECCSS-CCCCC-TTGGGCTTCCEEECCSSCCC-CCGGGTTCTTCC-EEECCSSCC-CCC-----GGGTTCTTCCEE
T ss_pred             CCEEECCCC-CCCCc-cccccCCCCCEEeCcCCcCC-CCccccCCcccc-ccccccccc-ccc-----cccccccccccc
Confidence            578899888 88877 46888999999999665544 333344444 44 555443221 111     137788888888


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccc--------------------------cc---------cccchhhHHHHHhc
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDE--------------------------EG---------RRKNEKDKQLLEAL  124 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--------------------------~~---------~~~~~~~~~~~~~l  124 (361)
                      ++..+.........  ............+                          ..         ..............
T Consensus       116 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (384)
T d2omza2         116 TLFNNQITDIDPLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL  193 (384)
T ss_dssp             ECCSSCCCCCGGGT--TCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGG
T ss_pred             cccccccccccccc--ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccc
Confidence            87755443221100  0000000000000                          00         00000000112234


Q ss_pred             CCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCC
Q 018079          125 QPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDG  203 (361)
Q Consensus       125 ~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~  203 (361)
                      ..+++++.+++.++....+++ ...+++|+.|+++++ .+..++.+..++ |+.++++++. +..++.            
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~-~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~------------  258 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQ-ISNLAP------------  258 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCCCGG------------
T ss_pred             ccccccceeeccCCccCCCCc-ccccCCCCEEECCCC-CCCCcchhhcccccchhccccCc-cCCCCc------------
Confidence            456778888888877666554 355678888888886 566666677778 8888888754 444432            


Q ss_pred             CCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCC
Q 018079          204 PSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCEN  283 (361)
Q Consensus       204 ~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~  283 (361)
                               +..+++|++|+++++ .+...+.       +..++.++.+.+.++ .+..++ .+..+++++.|+++++ .
T Consensus       259 ---------~~~~~~L~~L~l~~~-~l~~~~~-------~~~~~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~n-~  318 (384)
T d2omza2         259 ---------LSGLTKLTELKLGAN-QISNISP-------LAGLTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFN-N  318 (384)
T ss_dssp             ---------GTTCTTCSEEECCSS-CCCCCGG-------GTTCTTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCSS-C
T ss_pred             ---------ccccccCCEeeccCc-ccCCCCc-------ccccccccccccccc-cccccc-ccchhcccCeEECCCC-C
Confidence                     336777888877664 2322221       234555666665553 343333 3444566666666653 3


Q ss_pred             cccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCC
Q 018079          284 MEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       284 l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c  333 (361)
                      ++.++     .+..+++|++|++++| .++.++ .+..+++|++|++++|
T Consensus       319 l~~l~-----~l~~l~~L~~L~L~~n-~l~~l~-~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         319 ISDIS-----PVSSLTKLQRLFFANN-KVSDVS-SLANLTNINWLSAGHN  361 (384)
T ss_dssp             CSCCG-----GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECCSS
T ss_pred             CCCCc-----ccccCCCCCEEECCCC-CCCCCh-hHcCCCCCCEEECCCC
Confidence            33333     2344566666666654 455554 3555666666666655

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.60  E-value=4.9e-16  Score=138.77  Aligned_cols=243  Identities=13%  Similarity=0.077  Sum_probs=145.1

Q ss_pred             ceeecCCCCccc---ccCccCCCccccceecceeeecCCCCCccc-ccceeceeEEcCCCCCCChHHHHHhhcCCCCCCc
Q 018079            2 RSLLNFGTNSLK---YMPIGISKLTSLRRLDKFVVGGGVDGSNTG-RLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLL   77 (361)
Q Consensus         2 ~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~-~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~   77 (361)
                      +.|+++++ .+.   .+|+++++|++||+|++.++.      .+. .+                     +..++++++|+
T Consensus        53 ~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N------~l~g~i---------------------P~~i~~L~~L~  104 (313)
T d1ogqa_          53 NNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGIN------NLVGPI---------------------PPAIAKLTQLH  104 (313)
T ss_dssp             EEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEET------TEESCC---------------------CGGGGGCTTCS
T ss_pred             EEEECCCC-CCCCCCCCChHHhcCcccccccccccc------cccccc---------------------ccccccccccc
Confidence            45677766 443   567777788888888774321      111 11                     12367777888


Q ss_pred             eEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC-CCchhhhcCccCCee
Q 018079           78 RLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN-IFPKWLTSLANLREL  156 (361)
Q Consensus        78 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~~~l~~L~~L  156 (361)
                      +|+++.|....                              .....+..+.+|+++++.++... .+|.++..++.++.+
T Consensus       105 ~L~Ls~N~l~~------------------------------~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l  154 (313)
T d1ogqa_         105 YLYITHTNVSG------------------------------AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI  154 (313)
T ss_dssp             EEEEEEECCEE------------------------------ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             hhhhccccccc------------------------------cccccccchhhhcccccccccccccCchhhccCccccee
Confidence            88888776422                              11223445667777877766533 367777778888888


Q ss_pred             eecCCCCCCCCCC-CCCCc--cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079          157 NLSLCFNCEHLPQ-LGKLP--LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       157 ~l~~~~~~~~l~~-l~~l~--L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      +++++.....+|. +..++  ++.+.+++ ..+........                   ..+ ....+++..+......
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~-------------------~~l-~~~~l~l~~~~~~~~~  213 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTF-------------------ANL-NLAFVDLSRNMLEGDA  213 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGG-------------------GGC-CCSEEECCSSEEEECC
T ss_pred             ecccccccccccccccccccccccccccc-ccccccccccc-------------------ccc-cccccccccccccccc
Confidence            8877644335554 55555  46666664 33443333221                   122 2335666554333333


Q ss_pred             hhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCC
Q 018079          234 NYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLK  313 (361)
Q Consensus       234 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~  313 (361)
                      +.      ....+++++.+++.++ .+...+..+..+++|+.|+++++.--..+|.    .++++++|+.|+++++ +++
T Consensus       214 ~~------~~~~~~~l~~l~~~~~-~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~----~l~~L~~L~~L~Ls~N-~l~  281 (313)
T d1ogqa_         214 SV------LFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQ----GLTQLKFLHSLNVSFN-NLC  281 (313)
T ss_dssp             GG------GCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSSCCEECCCG----GGGGCTTCCEEECCSS-EEE
T ss_pred             cc------cccccccccccccccc-cccccccccccccccccccCccCeecccCCh----HHhCCCCCCEEECcCC-ccc
Confidence            22      3446777888877775 3443444566677888888887544346775    5667778888888874 444


Q ss_pred             -ccccccCCCCCCCeEEEeCCccc
Q 018079          314 -VLPDCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       314 -~l~~~l~~l~~L~~L~l~~c~~l  336 (361)
                       .+|. +..+++|+.+++.+++.+
T Consensus       282 g~iP~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         282 GEIPQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             EECCC-STTGGGSCGGGTCSSSEE
T ss_pred             ccCCC-cccCCCCCHHHhCCCccc
Confidence             5664 466777888878777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.58  E-value=2.6e-14  Score=126.89  Aligned_cols=259  Identities=15%  Similarity=0.116  Sum_probs=141.7

Q ss_pred             ceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEE
Q 018079            2 RSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHL   81 (361)
Q Consensus         2 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l   81 (361)
                      ++++.++. .++.+|.++.  +++++|++       ..+.+++++                    ...+.++++|++|++
T Consensus        13 ~~~~C~~~-~L~~lP~~l~--~~l~~L~L-------s~N~i~~l~--------------------~~~f~~l~~L~~L~l   62 (305)
T d1xkua_          13 RVVQCSDL-GLEKVPKDLP--PDTALLDL-------QNNKITEIK--------------------DGDFKNLKNLHTLIL   62 (305)
T ss_dssp             TEEECTTS-CCCSCCCSCC--TTCCEEEC-------CSSCCCCBC--------------------TTTTTTCTTCCEEEC
T ss_pred             CEEEecCC-CCCccCCCCC--CCCCEEEC-------cCCcCCCcC--------------------hhHhhcccccccccc
Confidence            45666665 7888888774  67888888       444444442                    011445555666666


Q ss_pred             EecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhh-cCccCCeeeecC
Q 018079           82 QFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLT-SLANLRELNLSL  160 (361)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~-~l~~L~~L~l~~  160 (361)
                      +.+.........+....+++.+++..++       ...++.  .....+..|...++....++.... .......+....
T Consensus        63 ~~n~~~~i~~~~f~~l~~L~~L~l~~n~-------l~~l~~--~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_          63 INNKISKISPGAFAPLVKLERLYLSKNQ-------LKELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             CSSCCCCBCTTTTTTCTTCCEEECCSSC-------CSBCCS--SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             ccccccccchhhhhCCCccCEecccCCc-------cCcCcc--chhhhhhhhhccccchhhhhhhhhhcccccccccccc
Confidence            5554433222222233333333333221       111111  112345555555555444443322 334444444443


Q ss_pred             CCCCC--CCC-CCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhh
Q 018079          161 CFNCE--HLP-QLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYR  236 (361)
Q Consensus       161 ~~~~~--~l~-~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~  236 (361)
                      +....  ..+ .+..++ |+.+.+.++. +..++.                      ..+++|+.|++.++......+  
T Consensus       134 n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~----------------------~~~~~L~~L~l~~n~~~~~~~--  188 (305)
T d1xkua_         134 NPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ----------------------GLPPSLTELHLDGNKITKVDA--  188 (305)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----------------------SCCTTCSEEECTTSCCCEECT--
T ss_pred             ccccccCCCccccccccccCccccccCC-ccccCc----------------------ccCCccCEEECCCCcCCCCCh--
Confidence            31111  111 133445 6666666532 333321                      146788888887754333222  


Q ss_pred             hccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCcc
Q 018079          237 ITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVL  315 (361)
Q Consensus       237 ~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l  315 (361)
                          ..+..++.++.|+++++ .+..+ +.++..+++|++|+++++ .++.+|.    .+.++++|++|+++++ +++.+
T Consensus       189 ----~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~lp~----~l~~l~~L~~L~Ls~N-~i~~i  257 (305)
T d1xkua_         189 ----ASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKVPG----GLADHKYIQVVYLHNN-NISAI  257 (305)
T ss_dssp             ----GGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSCCT----TTTTCSSCCEEECCSS-CCCCC
T ss_pred             ----hHhhccccccccccccc-cccccccccccccccceeeecccc-ccccccc----ccccccCCCEEECCCC-ccCcc
Confidence                24556778888888775 56655 345566888888888886 5666664    5667888888888884 67776


Q ss_pred             cc-------ccCCCCCCCeEEEeCCcc
Q 018079          316 PD-------CLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       316 ~~-------~l~~l~~L~~L~l~~c~~  335 (361)
                      +.       .....++|+.++++++|.
T Consensus       258 ~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         258 GSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ChhhccCcchhcccCCCCEEECCCCcC
Confidence            52       234567788888988874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.5e-14  Score=132.17  Aligned_cols=168  Identities=21%  Similarity=0.250  Sum_probs=131.3

Q ss_pred             cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079          124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED  202 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~  202 (361)
                      ....++|++|++.++....++ .+..+++|+.++++++ .+..++.+..++ |+.++++++. +..++.           
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~L~~L~l~~~~-l~~~~~-----------  280 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ-ISNISP-----------  280 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CCCCGG-----------
T ss_pred             ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccC-ccCCCCcccccccCCEeeccCcc-cCCCCc-----------
Confidence            345678999999999876665 5678999999999997 577777788899 9999998643 444432           


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCC
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCE  282 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~  282 (361)
                                +..++.++.+.+..+ .+....       .+..+++++.|+++++ +++.++ .+..+++|++|++++| 
T Consensus       281 ----------~~~~~~l~~l~~~~n-~l~~~~-------~~~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n-  339 (384)
T d2omza2         281 ----------LAGLTALTNLELNEN-QLEDIS-------PISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANN-  339 (384)
T ss_dssp             ----------GTTCTTCSEEECCSS-CCSCCG-------GGGGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSS-
T ss_pred             ----------ccccccccccccccc-cccccc-------ccchhcccCeEECCCC-CCCCCc-ccccCCCCCEEECCCC-
Confidence                      337888899988764 333322       3457899999999985 677776 3677999999999997 


Q ss_pred             CcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCC
Q 018079          283 NMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       283 ~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c  333 (361)
                      .++.++     .++++++|+.|++++| +++.++. +.++++|+.|+++++
T Consensus       340 ~l~~l~-----~l~~l~~L~~L~l~~N-~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         340 KVSDVS-----SLANLTNINWLSAGHN-QISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCCCG-----GGGGCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCCCh-----hHcCCCCCCEEECCCC-cCCCChh-hccCCCCCEeeCCCC
Confidence            666666     3567899999999875 7788775 889999999999874

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.8e-14  Score=122.69  Aligned_cols=189  Identities=18%  Similarity=0.136  Sum_probs=139.4

Q ss_pred             eeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEE
Q 018079            3 SLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQ   82 (361)
Q Consensus         3 ~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~   82 (361)
                      ..+.++. ++..+|+++.  +++++|++       ..+.+..++                    ...+.++++|++|+++
T Consensus        14 ~v~C~~~-~L~~iP~~lp--~~l~~L~L-------s~N~i~~l~--------------------~~~f~~l~~L~~L~L~   63 (266)
T d1p9ag_          14 EVNCDKR-NLTALPPDLP--KDTTILHL-------SENLLYTFS--------------------LATLMPYTRLTQLNLD   63 (266)
T ss_dssp             EEECTTS-CCSSCCSCCC--TTCCEEEC-------TTSCCSEEE--------------------GGGGTTCTTCCEEECT
T ss_pred             EEEccCC-CCCeeCcCcC--cCCCEEEC-------cCCcCCCcC--------------------HHHhhccccccccccc
Confidence            4567777 7889998775  57899999       666666553                    1236788899999998


Q ss_pred             ecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCC
Q 018079           83 FGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCF  162 (361)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~  162 (361)
                      .|....                                .+....+++|++|+++++.....+..+..+++|+.|+++++.
T Consensus        64 ~N~l~~--------------------------------l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          64 RAELTK--------------------------------LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             TSCCCE--------------------------------EECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             cccccc--------------------------------cccccccccccccccccccccccccccccccccccccccccc
Confidence            886432                                123456788999999998877777777888999999999864


Q ss_pred             CCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhcc
Q 018079          163 NCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITR  239 (361)
Q Consensus       163 ~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~  239 (361)
                       ...++.  +..++ ++.|.++++ .+..++..+                   +..+++|+.++++++ ++..++.    
T Consensus       112 -~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~-------------------~~~l~~l~~l~l~~N-~l~~~~~----  165 (266)
T d1p9ag_         112 -LTSLPLGALRGLGELQELYLKGN-ELKTLPPGL-------------------LTPTPKLEKLSLANN-NLTELPA----  165 (266)
T ss_dssp             -CCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT-------------------TTTCTTCCEEECTTS-CCSCCCT----
T ss_pred             -cceeecccccccccccccccccc-ccceecccc-------------------ccccccchhcccccc-cccccCc----
Confidence             444333  56667 899999864 466666544                   336788999999874 5555543    


Q ss_pred             ccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079          240 KENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       240 ~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                       ..+..+++|+.|+++++ +++.+|..+..+++|+.|++++.
T Consensus       166 -~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         166 -GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             -TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             -cccccccccceeecccC-CCcccChhHCCCCCCCEEEecCC
Confidence             34567889999999884 68889888888888999998874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=5.3e-14  Score=119.40  Aligned_cols=169  Identities=17%  Similarity=0.212  Sum_probs=124.9

Q ss_pred             HhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCC
Q 018079          122 EALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESS  200 (361)
Q Consensus       122 ~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~  200 (361)
                      +++..+++|++|+++++....+++ +..+++++.++++++ ..+.++.+..++ |+.+.++++.. ..+..         
T Consensus        57 ~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n-~~~~i~~l~~l~~L~~l~l~~~~~-~~~~~---------  124 (227)
T d1h6ua2          57 EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTSTQI-TDVTP---------  124 (227)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCGGGTTCTTCCEEECTTSCC-CCCGG---------
T ss_pred             hhHhcCCCCcEeecCCceeecccc-ccccccccccccccc-cccccccccccccccccccccccc-cccch---------
Confidence            456778899999999987766543 678889999999886 556677778888 99999987642 22211         


Q ss_pred             CCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeecc
Q 018079          201 EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFF  280 (361)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  280 (361)
                                  +...+.++.+.+.++. +...       ..+..+++|+.|.+.++ .+...+ .+.++++|++|++++
T Consensus       125 ------------~~~~~~~~~l~~~~~~-~~~~-------~~~~~~~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~Ls~  182 (227)
T d1h6ua2         125 ------------LAGLSNLQVLYLDLNQ-ITNI-------SPLAGLTNLQYLSIGNA-QVSDLT-PLANLSKLTTLKADD  182 (227)
T ss_dssp             ------------GTTCTTCCEEECCSSC-CCCC-------GGGGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCS
T ss_pred             ------------hccccchhhhhchhhh-hchh-------hhhcccccccccccccc-ccccch-hhcccccceecccCC
Confidence                        3367788888887653 2222       12446888999999875 455544 367789999999998


Q ss_pred             CCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeC
Q 018079          281 CENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWG  332 (361)
Q Consensus       281 c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~  332 (361)
                      + .+++++     .++++++|+.|++++| ++++++. ++++++|+.|++++
T Consensus       183 n-~l~~l~-----~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         183 N-KISDIS-----PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             S-CCCCCG-----GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             C-ccCCCh-----hhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence            6 677766     3567899999999997 6888875 88899999999874

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.6e-15  Score=131.29  Aligned_cols=193  Identities=21%  Similarity=0.193  Sum_probs=131.6

Q ss_pred             HHHHHhcCCCCCccEEEecccCCCC-CchhhhcCccCCeeeecCCCCCCC--CCC-CCCCc-cceEeccccccceeeccc
Q 018079          118 KQLLEALQPPLNVEELWIIFYGGNI-FPKWLTSLANLRELNLSLCFNCEH--LPQ-LGKLP-LEKLQLKNLKSVKRVGNE  192 (361)
Q Consensus       118 ~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~--l~~-l~~l~-L~~L~l~~~~~l~~l~~~  192 (361)
                      ..+...+..+++|++|++++|.... .+..++.+++|+.|++++|..+++  +.. ...++ |++|++++|..+......
T Consensus        61 ~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~  140 (284)
T d2astb2          61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  140 (284)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccch
Confidence            3445557788999999999986533 456677889999999999977763  222 34678 999999998766543221


Q ss_pred             ccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCc-cchhhhhhhccccccccCCCccEEEEecCCCCCc-cchhccCC
Q 018079          193 FLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMK-ELEEWNYRITRKENISIMPRLSSLEVSSCNKLKA-LPDYLLQM  270 (361)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-l~~~~~~l  270 (361)
                      ...                 ....++|+.|++.+|. .+.+...    ......+|+|++|++++|..+++ ....+..+
T Consensus       141 ~~~-----------------~~~~~~L~~L~l~~~~~~i~~~~l----~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         141 VAV-----------------AHVSETITQLNLSGYRKNLQKSDL----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             HHH-----------------HHSCTTCCEEECCSCGGGSCHHHH----HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             hhh-----------------cccccccchhhhcccccccccccc----cccccccccccccccccccCCCchhhhhhccc
Confidence            110                 1145789999999874 3443332    22345789999999999987763 34456779


Q ss_pred             CCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccchh
Q 018079          271 TVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLEN  338 (361)
Q Consensus       271 ~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~  338 (361)
                      ++|++|++++|..+..-. +.  .++++++|+.|++.+|..-..+......+|+|+   + +|..++.
T Consensus       200 ~~L~~L~L~~C~~i~~~~-l~--~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~  260 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPET-LL--ELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTT  260 (284)
T ss_dssp             TTCCEEECTTCTTCCGGG-GG--GGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCC
T ss_pred             CcCCEEECCCCCCCChHH-HH--HHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCC
Confidence            999999999998775421 11  356689999999999843333444344566665   3 4555543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=6.9e-13  Score=117.46  Aligned_cols=260  Identities=13%  Similarity=0.069  Sum_probs=165.9

Q ss_pred             CceeecCCCCcccccCc-cCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceE
Q 018079            1 MRSLLNFGTNSLKYMPI-GISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRL   79 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L   79 (361)
                      +++|++++| .++++|+ .+.++.+|++|++.       .+.+..+.                    +..+.++++|+.|
T Consensus        33 l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~-------~n~~~~i~--------------------~~~f~~l~~L~~L   84 (305)
T d1xkua_          33 TALLDLQNN-KITEIKDGDFKNLKNLHTLILI-------NNKISKIS--------------------PGAFAPLVKLERL   84 (305)
T ss_dssp             CCEEECCSS-CCCCBCTTTTTTCTTCCEEECC-------SSCCCCBC--------------------TTTTTTCTTCCEE
T ss_pred             CCEEECcCC-cCCCcChhHhhccccccccccc-------cccccccc--------------------hhhhhCCCccCEe
Confidence            589999999 9999997 58999999999994       44333331                    0124556667777


Q ss_pred             EEEecCCCCCCcchhhhhhcccccccccccccccchhhHHH-HHhcCCCCCccEEEecccCCCC---CchhhhcCccCCe
Q 018079           80 HLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQL-LEALQPPLNVEELWIIFYGGNI---FPKWLTSLANLRE  155 (361)
Q Consensus        80 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~---~p~~~~~l~~L~~  155 (361)
                      ++++|.....+..   ....+..++..++.       ...+ ...+........++...+....   .+.++..+++|+.
T Consensus        85 ~l~~n~l~~l~~~---~~~~l~~L~~~~n~-------l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          85 YLSKNQLKELPEK---MPKTLQELRVHENE-------ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  154 (305)
T ss_dssp             ECCSSCCSBCCSS---CCTTCCEEECCSSC-------CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             cccCCccCcCccc---hhhhhhhhhccccc-------hhhhhhhhhhccccccccccccccccccCCCccccccccccCc
Confidence            7766654332211   12233334443322       1111 1223455667777777654322   3445567888999


Q ss_pred             eeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhh
Q 018079          156 LNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWN  234 (361)
Q Consensus       156 L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~  234 (361)
                      +++.++ .+..++. ..++ ++.|+++++......+..                    +..++.+++|+++++ .+..++
T Consensus       155 l~l~~n-~l~~l~~-~~~~~L~~L~l~~n~~~~~~~~~--------------------~~~~~~l~~L~~s~n-~l~~~~  211 (305)
T d1xkua_         155 IRIADT-NITTIPQ-GLPPSLTELHLDGNKITKVDAAS--------------------LKGLNNLAKLGLSFN-SISAVD  211 (305)
T ss_dssp             EECCSS-CCCSCCS-SCCTTCSEEECTTSCCCEECTGG--------------------GTTCTTCCEEECCSS-CCCEEC
T ss_pred             cccccC-CccccCc-ccCCccCEEECCCCcCCCCChhH--------------------hhccccccccccccc-cccccc
Confidence            999886 4555554 2356 999999976543333222                    347889999999875 455443


Q ss_pred             hhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccc--c-ccCCCCCccEEEEecCCC
Q 018079          235 YRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED--H-RTTDIPRLSSLRIGYCPK  311 (361)
Q Consensus       235 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~--L-~l~~l~~L~~L~l~~c~~  311 (361)
                      .     ..+.++++|++|+++++ .++.+|..+..+++|+.|+++++ .++.++.-..  . ......+|+.|++++++-
T Consensus       212 ~-----~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         212 N-----GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             T-----TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             c-----ccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            3     34567999999999996 78899988999999999999995 6777653111  0 123367899999999653


Q ss_pred             -CCccc-cccCCCCCCCeE
Q 018079          312 -LKVLP-DCLLRTTTLQKL  328 (361)
Q Consensus       312 -l~~l~-~~l~~l~~L~~L  328 (361)
                       ...++ ..+..+.....+
T Consensus       285 ~~~~~~~~~f~~~~~~~~~  303 (305)
T d1xkua_         285 QYWEIQPSTFRCVYVRAAV  303 (305)
T ss_dssp             CGGGSCGGGGTTCCCGGGE
T ss_pred             ccCcCCHhHhcccccCccc
Confidence             22344 445554444433

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.6e-13  Score=119.33  Aligned_cols=173  Identities=22%  Similarity=0.248  Sum_probs=134.7

Q ss_pred             CCccEEEecccCCCCCc-hhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          128 LNVEELWIIFYGGNIFP-KWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       128 ~~L~~L~l~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      +++++|+++++....+| ..+..+++|+.|+++++ .+..++.++.++ |+.|+++++. ++..+..             
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~Ls~N~-l~~~~~~-------------   95 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQ-LQSLPLL-------------   95 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEEECCSSC-CSSCCCC-------------
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccc-ccccccccccccccccccccccc-ccccccc-------------
Confidence            57999999999887766 45678999999999996 677788788899 9999999753 5544432             


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhc-cCCCCcceEeeccCCCc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYL-LQMTVLQNLRIFFCENM  284 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~c~~l  284 (361)
                             +..+++|+.|++.++. ...+..     .....+++++.|.+.++ .+..++... ..+++|+.++++++ .+
T Consensus        96 -------~~~l~~L~~L~l~~~~-~~~~~~-----~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l  160 (266)
T d1p9ag_          96 -------GQTLPALTVLDVSFNR-LTSLPL-----GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NL  160 (266)
T ss_dssp             -------TTTCTTCCEEECCSSC-CCCCCS-----STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred             -------cccccccccccccccc-cceeec-----ccccccccccccccccc-ccceeccccccccccchhcccccc-cc
Confidence                   3478999999998754 333322     34457889999999885 677776654 45899999999985 55


Q ss_pred             ccCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCc
Q 018079          285 EELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       285 ~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~  334 (361)
                      +.++.   -.+..+++|++|+++++ .++.+|.++..+++|+.|+++++|
T Consensus       161 ~~~~~---~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         161 TELPA---GLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             SCCCT---TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             cccCc---cccccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            55552   13566899999999985 688999888899999999999876

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.6e-15  Score=128.78  Aligned_cols=182  Identities=16%  Similarity=0.176  Sum_probs=132.1

Q ss_pred             CCCCccEEEecccCCCC--CchhhhcCccCCeeeecCCCCCC-C-CCCCCCCc-cceEeccccccceeecccccccCCCC
Q 018079          126 PPLNVEELWIIFYGGNI--FPKWLTSLANLRELNLSLCFNCE-H-LPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESS  200 (361)
Q Consensus       126 ~l~~L~~L~l~~~~~~~--~p~~~~~l~~L~~L~l~~~~~~~-~-l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~  200 (361)
                      ...+|++|+++++....  +...+..+++|++|++.+|. +. . +..++.++ |++|++++|..++.......      
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l------  116 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL------  116 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH------
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchh------
Confidence            44689999999876433  44445689999999999984 43 2 22377889 99999999987765332221      


Q ss_pred             CCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhcccc-ccccCCCccEEEEecCC-CCC--ccchhccCCCCcceE
Q 018079          201 EDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKE-NISIMPRLSSLEVSSCN-KLK--ALPDYLLQMTVLQNL  276 (361)
Q Consensus       201 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~-~~~~l~~L~~L~l~~c~-~l~--~l~~~~~~l~~L~~L  276 (361)
                                  ...+++|++|++++|..+.+...    .. ....+++|+.|++.+|. .++  .+......+++|++|
T Consensus       117 ------------~~~~~~L~~L~ls~c~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L  180 (284)
T d2astb2         117 ------------LSSCSRLDELNLSWCFDFTEKHV----QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  180 (284)
T ss_dssp             ------------HHHCTTCCEEECCCCTTCCHHHH----HHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ------------hHHHHhccccccccccccccccc----hhhhcccccccchhhhccccccccccccccccccccccccc
Confidence                        23689999999999987764332    11 12246899999999874 333  233344569999999


Q ss_pred             eeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079          277 RIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       277 ~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c  333 (361)
                      ++++|..++.-. +.  .+.++++|++|++++|+.+++-. ..+..+|+|+.|++++|
T Consensus       181 ~L~~~~~itd~~-~~--~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         181 DLSDSVMLKNDC-FQ--EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ECTTCTTCCGGG-GG--GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccCCCchh-hh--hhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            999998876321 11  34568999999999999887643 56788999999999998

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=1.4e-12  Score=109.17  Aligned_cols=164  Identities=20%  Similarity=0.237  Sum_probs=128.9

Q ss_pred             CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      +.+|++|++.++....++ .+..+++|+.|+++++ .+..++.++.++ |+.|+++++ .++.++.              
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~~~~l~~L~~L~l~~n-~i~~l~~--------------  107 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDEN-KVKDLSS--------------  107 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCGGG--------------
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCc-cccCccccccCccccccccccc-ccccccc--------------
Confidence            357899999998876665 4778999999999997 677788888899 999999975 4665542              


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME  285 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  285 (361)
                             +..+++|+.|++.++.. ..+.       .+..+++++.++++++ .++..+ .+..+++|+.++++++ .+.
T Consensus       108 -------l~~l~~L~~L~l~~~~~-~~~~-------~l~~l~~l~~l~~~~n-~l~~~~-~~~~l~~L~~l~l~~n-~l~  169 (210)
T d1h6ta2         108 -------LKDLKKLKSLSLEHNGI-SDIN-------GLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QIS  169 (210)
T ss_dssp             -------GTTCTTCCEEECTTSCC-CCCG-------GGGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCC
T ss_pred             -------ccccccccccccccccc-cccc-------cccccccccccccccc-cccccc-cccccccccccccccc-ccc
Confidence                   44789999999998643 3222       3557899999999875 565544 5667899999999986 555


Q ss_pred             cCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeC
Q 018079          286 ELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWG  332 (361)
Q Consensus       286 ~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~  332 (361)
                      .++     .++++++|++|++++| .+++++ .+.++++|++|++++
T Consensus       170 ~i~-----~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         170 DIV-----PLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCG-----GGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEEE
T ss_pred             ccc-----cccCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEccC
Confidence            655     4677899999999986 788887 488999999999975

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=1.6e-12  Score=110.11  Aligned_cols=189  Identities=15%  Similarity=0.231  Sum_probs=137.5

Q ss_pred             CCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhh
Q 018079           19 ISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEE   98 (361)
Q Consensus        19 i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~   98 (361)
                      +..+.+|++|++       .++.++.+.                      .+..+++|++|+++.|....          
T Consensus        37 ~~~l~~L~~L~l-------~~~~i~~l~----------------------~l~~l~~L~~L~ls~n~i~~----------   77 (227)
T d1h6ua2          37 QADLDGITTLSA-------FGTGVTTIE----------------------GVQYLNNLIGLELKDNQITD----------   77 (227)
T ss_dssp             HHHHHTCCEEEC-------TTSCCCCCT----------------------TGGGCTTCCEEECCSSCCCC----------
T ss_pred             HHHcCCcCEEEC-------CCCCCCcch----------------------hHhcCCCCcEeecCCceeec----------
Confidence            456788888888       444444332                      15678899999998876432          


Q ss_pred             cccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cce
Q 018079           99 EGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEK  177 (361)
Q Consensus        99 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~  177 (361)
                                            ...+..+++++++++.++....++ .+..+++|+.+.++++. ...+..+...+ ++.
T Consensus        78 ----------------------~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~~  133 (227)
T d1h6ua2          78 ----------------------LAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV  133 (227)
T ss_dssp             ----------------------CGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred             ----------------------cccccccccccccccccccccccc-ccccccccccccccccc-ccccchhccccchhh
Confidence                                  123678889999999988776665 46788999999998873 44445566677 888


Q ss_pred             EeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecC
Q 018079          178 LQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSC  257 (361)
Q Consensus       178 L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c  257 (361)
                      +.++++. +.....                     +..+++|+.|++.++. +..+.       .+..+++|+.|+++++
T Consensus       134 l~~~~~~-~~~~~~---------------------~~~~~~L~~L~l~~n~-~~~~~-------~l~~l~~L~~L~Ls~n  183 (227)
T d1h6ua2         134 LYLDLNQ-ITNISP---------------------LAGLTNLQYLSIGNAQ-VSDLT-------PLANLSKLTTLKADDN  183 (227)
T ss_dssp             EECCSSC-CCCCGG---------------------GGGCTTCCEEECCSSC-CCCCG-------GGTTCTTCCEEECCSS
T ss_pred             hhchhhh-hchhhh---------------------hccccccccccccccc-cccch-------hhcccccceecccCCC
Confidence            8887654 322221                     3478899999998753 33322       3557999999999986


Q ss_pred             CCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEec
Q 018079          258 NKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGY  308 (361)
Q Consensus       258 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~  308 (361)
                       ++++++. +..+++|++|++++| .++.++     .++++++|+.|++++
T Consensus       184 -~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~-----~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         184 -KISDISP-LASLPNLIEVHLKNN-QISDVS-----PLANTSNLFIVTLTN  226 (227)
T ss_dssp             -CCCCCGG-GGGCTTCCEEECTTS-CCCBCG-----GGTTCTTCCEEEEEE
T ss_pred             -ccCCChh-hcCCCCCCEEECcCC-cCCCCc-----ccccCCCCCEEEeeC
Confidence             7888764 778999999999997 677777     366789999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.41  E-value=2.3e-13  Score=121.12  Aligned_cols=206  Identities=17%  Similarity=0.127  Sum_probs=145.7

Q ss_pred             hhcCCCCCCceEEEEe-cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC-Cch
Q 018079           68 LQLSNKKNLLRLHLQF-GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI-FPK  145 (361)
Q Consensus        68 ~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~  145 (361)
                      ..++++++|++|+++. |..                              .+.++..+..+++|++|+++++.... .+.
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l------------------------------~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~  119 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNL------------------------------VGPIPPAIAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTE------------------------------ESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred             hHHhcCcccccccccccccc------------------------------ccccccccccccccchhhhccccccccccc
Confidence            4578888999999986 432                              22346778889999999999988766 445


Q ss_pred             hhhcCccCCeeeecCCCCCCCCCC-CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCc-cEE
Q 018079          146 WLTSLANLRELNLSLCFNCEHLPQ-LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKL-KSL  222 (361)
Q Consensus       146 ~~~~l~~L~~L~l~~~~~~~~l~~-l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L-~~L  222 (361)
                      .+..+.+|+.++++++.....+|. +..++ ++.++++++.....+|..+                    ..++++ +.+
T Consensus       120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--------------------~~l~~l~~~l  179 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--------------------GSFSKLFTSM  179 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--------------------GCCCTTCCEE
T ss_pred             cccchhhhcccccccccccccCchhhccCcccceeecccccccccccccc--------------------cccccccccc
Confidence            566888999999998765666665 78888 9999998765333444433                    255554 667


Q ss_pred             EEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCcc
Q 018079          223 EIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLS  302 (361)
Q Consensus       223 ~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~  302 (361)
                      .+.+. ++.....     ..+..+. ...+++..+.....+|..+..+++++.++++++..-..+|     .+..+++|+
T Consensus       180 ~~~~n-~l~~~~~-----~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-----~~~~~~~L~  247 (313)
T d1ogqa_         180 TISRN-RLTGKIP-----PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLN  247 (313)
T ss_dssp             ECCSS-EEEEECC-----GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-----GCCCCTTCC
T ss_pred             ccccc-ccccccc-----ccccccc-cccccccccccccccccccccccccccccccccccccccc-----ccccccccc
Confidence            76653 3432221     1222333 4467777665555677788889999999999874433344     456688999


Q ss_pred             EEEEecCCCCCccccccCCCCCCCeEEEeCCcc
Q 018079          303 SLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       303 ~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~  335 (361)
                      .|++++|.....+|.++.++++|++|+++++.-
T Consensus       248 ~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             EEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred             cccCccCeecccCChHHhCCCCCCEEECcCCcc
Confidence            999998644448999999999999999999853

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=2.2e-12  Score=107.00  Aligned_cols=160  Identities=21%  Similarity=0.237  Sum_probs=119.6

Q ss_pred             CCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCC
Q 018079          127 PLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPS  205 (361)
Q Consensus       127 l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~  205 (361)
                      ++++++|++.++....++ .+..+++|+.|++++| .+..+++++.++ |+.|+++++. +..++.              
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~-~~~~~~--------------  101 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQ-IADITP--------------  101 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG--------------
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccc-cccCcccccCCcccccccccccc-cccccc--------------
Confidence            467889999988876664 4678999999999986 677777788899 9999998754 343332              


Q ss_pred             CCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcc
Q 018079          206 SSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENME  285 (361)
Q Consensus       206 ~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~  285 (361)
                             +.++++|+.|++.++.... .       ..+..+++|+.|+++++ .+..++ .+..+++|+.|++.++ .++
T Consensus       102 -------l~~l~~L~~L~l~~~~~~~-~-------~~~~~l~~L~~L~l~~n-~l~~~~-~l~~~~~L~~L~l~~n-~l~  163 (199)
T d2omxa2         102 -------LANLTNLTGLTLFNNQITD-I-------DPLKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLNFSSN-QVT  163 (199)
T ss_dssp             -------GTTCTTCSEEECCSSCCCC-C-------GGGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCSS-CCC
T ss_pred             -------ccccccccccccccccccc-c-------cccchhhhhHHhhhhhh-hhcccc-cccccccccccccccc-ccc
Confidence                   4478999999998765432 2       13457899999999885 566665 5677889999999885 555


Q ss_pred             cCCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeE
Q 018079          286 ELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKL  328 (361)
Q Consensus       286 ~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L  328 (361)
                      .++     .++++++|++|++++| ++++++. +..+++|++|
T Consensus       164 ~l~-----~l~~l~~L~~L~ls~N-~i~~i~~-l~~L~~L~~L  199 (199)
T d2omxa2         164 DLK-----PLANLTTLERLDISSN-KVSDISV-LAKLTNLESL  199 (199)
T ss_dssp             CCG-----GGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEE
T ss_pred             CCc-----cccCCCCCCEEECCCC-CCCCCcc-ccCCCCCCcC
Confidence            555     3667889999999986 5788763 6777888765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=2.3e-12  Score=106.87  Aligned_cols=161  Identities=18%  Similarity=0.236  Sum_probs=121.3

Q ss_pred             CCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCc
Q 018079           72 NKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLA  151 (361)
Q Consensus        72 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~  151 (361)
                      ++.++++|+++.+...+                                .+++..+++|++|++++|....+++ ++.++
T Consensus        38 ~l~~l~~L~l~~~~i~~--------------------------------l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~   84 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS--------------------------------IDGVEYLNNLTQINFSNNQLTDITP-LKNLT   84 (199)
T ss_dssp             HHTTCCEEECTTSCCCC--------------------------------CTTGGGCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             HhcCCCEEECCCCCCCC--------------------------------ccccccCCCcCcCccccccccCccc-ccCCc
Confidence            35688888888776433                                2346678999999999998766665 78899


Q ss_pred             cCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccc
Q 018079          152 NLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKEL  230 (361)
Q Consensus       152 ~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l  230 (361)
                      +|+.|+++++ ....++.++.++ |+.++++++.. ...+.                     +..+++|+.|+++++ .+
T Consensus        85 ~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~---------------------~~~l~~L~~L~l~~n-~l  140 (199)
T d2omxa2          85 KLVDILMNNN-QIADITPLANLTNLTGLTLFNNQI-TDIDP---------------------LKNLTNLNRLELSSN-TI  140 (199)
T ss_dssp             TCCEEECCSS-CCCCCGGGTTCTTCSEEECCSSCC-CCCGG---------------------GTTCTTCSEEECCSS-CC
T ss_pred             cccccccccc-cccccccccccccccccccccccc-ccccc---------------------cchhhhhHHhhhhhh-hh
Confidence            9999999987 566677788899 99999987653 22221                     447899999999885 34


Q ss_pred             hhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEE
Q 018079          231 EEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSL  304 (361)
Q Consensus       231 ~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L  304 (361)
                      ..++       .+..+++|+.|++.++ +++.++ .+..+++|++|+++++ .+++++.     ++++++|++|
T Consensus       141 ~~~~-------~l~~~~~L~~L~l~~n-~l~~l~-~l~~l~~L~~L~ls~N-~i~~i~~-----l~~L~~L~~L  199 (199)
T d2omxa2         141 SDIS-------ALSGLTSLQQLNFSSN-QVTDLK-PLANLTTLERLDISSN-KVSDISV-----LAKLTNLESL  199 (199)
T ss_dssp             CCCG-------GGTTCTTCSEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCSEE
T ss_pred             cccc-------cccccccccccccccc-cccCCc-cccCCCCCCEEECCCC-CCCCCcc-----ccCCCCCCcC
Confidence            4332       3557999999999885 677776 4778999999999997 5777663     4456677665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=2.2e-12  Score=107.87  Aligned_cols=146  Identities=22%  Similarity=0.281  Sum_probs=114.6

Q ss_pred             hcCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCC
Q 018079          123 ALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSE  201 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~  201 (361)
                      ++..+++|++|+++++....+++ ++.+++|+.|++++| .+..++.+..++ |+.|+++++. +..++.          
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~~~-~~~~~~----------  129 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNG-ISDING----------  129 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSC-CCCCGG----------
T ss_pred             hHhhCCCCCEEeCCCccccCccc-cccCccccccccccc-ccccccccccccccccccccccc-cccccc----------
Confidence            46678999999999998777764 578999999999996 677888888899 9999999865 333321          


Q ss_pred             CCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccC
Q 018079          202 DGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFC  281 (361)
Q Consensus       202 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c  281 (361)
                                 +..+++++.+.+.++ .+.+..       ....+++|+.+++.++ .++.++. +..+++|++|+++++
T Consensus       130 -----------l~~l~~l~~l~~~~n-~l~~~~-------~~~~l~~L~~l~l~~n-~l~~i~~-l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         130 -----------LVHLPQLESLYLGNN-KITDIT-------VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKN  188 (210)
T ss_dssp             -----------GGGCTTCCEEECCSS-CCCCCG-------GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSS
T ss_pred             -----------ccccccccccccccc-cccccc-------cccccccccccccccc-ccccccc-ccCCCCCCEEECCCC
Confidence                       457899999999875 344332       2447899999999986 6777763 677999999999986


Q ss_pred             CCcccCCcccccccCCCCCccEEEEec
Q 018079          282 ENMEELPILEDHRTTDIPRLSSLRIGY  308 (361)
Q Consensus       282 ~~l~~lp~L~~L~l~~l~~L~~L~l~~  308 (361)
                       .++++|     .+.++++|+.|++++
T Consensus       189 -~i~~l~-----~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         189 -HISDLR-----ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -CCCBCG-----GGTTCTTCSEEEEEE
T ss_pred             -CCCCCh-----hhcCCCCCCEEEccC
Confidence             677776     467789999999975

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.36  E-value=2.9e-11  Score=108.34  Aligned_cols=279  Identities=19%  Similarity=0.170  Sum_probs=141.5

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc-----eeceeEEcCCCCCCChHHHHHhhcCCC-C
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ-----LRGECSIEGLCNVSHVDEAERLQLSNK-K   74 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~-----L~~~l~l~~l~~~~~~~~~~~~~l~~l-~   74 (361)
                      +++|+++++ .++.+|+.   +.+|++|++       ..+.+.+++     |+ .+.+.+... .        .+..+ +
T Consensus        40 l~~LdLs~~-~L~~lp~~---~~~L~~L~L-------s~N~l~~lp~~~~~L~-~L~l~~n~l-~--------~l~~lp~   98 (353)
T d1jl5a_          40 AHELELNNL-GLSSLPEL---PPHLESLVA-------SCNSLTELPELPQSLK-SLLVDNNNL-K--------ALSDLPP   98 (353)
T ss_dssp             CSEEECTTS-CCSCCCSC---CTTCSEEEC-------CSSCCSSCCCCCTTCC-EEECCSSCC-S--------CCCSCCT
T ss_pred             CCEEEeCCC-CCCCCCCC---CCCCCEEEC-------CCCCCcccccchhhhh-hhhhhhccc-c--------hhhhhcc
Confidence            578999999 89999974   467899999       455555554     22 333332111 1        12222 2


Q ss_pred             CCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCC
Q 018079           75 NLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLR  154 (361)
Q Consensus        75 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~  154 (361)
                      .|++|+++.|....                               + .....+++|++|++.++.....+..   ...+.
T Consensus        99 ~L~~L~L~~n~l~~-------------------------------l-p~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~  143 (353)
T d1jl5a_          99 LLEYLGVSNNQLEK-------------------------------L-PELQNSSFLKIIDVDNNSLKKLPDL---PPSLE  143 (353)
T ss_dssp             TCCEEECCSSCCSS-------------------------------C-CCCTTCTTCCEEECCSSCCSCCCCC---CTTCC
T ss_pred             cccccccccccccc-------------------------------c-cchhhhccceeeccccccccccccc---ccccc
Confidence            46666666655322                               1 1245567777777777665444432   33444


Q ss_pred             eeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhh
Q 018079          155 ELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEW  233 (361)
Q Consensus       155 ~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~  233 (361)
                      .+.+..+. ......++.++ ++.+.+.++. ....+.......... ..-......+....+++|+.+.+.++.. ...
T Consensus       144 ~l~~~~~~-~~~~~~l~~l~~l~~L~l~~n~-~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~l~~L~~l~l~~n~~-~~~  219 (353)
T d1jl5a_         144 FIAAGNNQ-LEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIV-AGNNILEELPELQNLPFLTTIYADNNLL-KTL  219 (353)
T ss_dssp             EEECCSSC-CSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEE-CCSSCCSSCCCCTTCTTCCEEECCSSCC-SSC
T ss_pred             chhhcccc-ccccccccccccceeccccccc-ccccccccccccccc-cccccccccccccccccccccccccccc-ccc
Confidence            55554432 22223355566 6667666432 122111110000000 0000111223345677788888776422 111


Q ss_pred             hh---hhc-----c---ccccccCCCccEEEEecC--CCCCcc--------------chhccCCCCcceEeeccCCCccc
Q 018079          234 NY---RIT-----R---KENISIMPRLSSLEVSSC--NKLKAL--------------PDYLLQMTVLQNLRIFFCENMEE  286 (361)
Q Consensus       234 ~~---~~~-----~---~~~~~~l~~L~~L~l~~c--~~l~~l--------------~~~~~~l~~L~~L~l~~c~~l~~  286 (361)
                      +.   ...     .   .......+.+....+...  ..+..+              +.....+++|++|++++| .++.
T Consensus       220 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~  298 (353)
T d1jl5a_         220 PDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIE  298 (353)
T ss_dssp             CSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCC-ccCc
Confidence            11   000     0   000011223333333221  011111              111123678999999986 5667


Q ss_pred             CCcccccccCCCCCccEEEEecCCCCCccccccCCCCCCCeEEEeCCccchhhccCCCCcccchhccCCceecC
Q 018079          287 LPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLRTTTLQKLTIWGCPLLENRYREGKGEDWHKISHIPHIKWS  360 (361)
Q Consensus       287 lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~i~~~~~~  360 (361)
                      +|.       .+++|++|++++| .++.+|..   +++|++|++++|+ ++....        .+..+..++||
T Consensus       299 lp~-------~~~~L~~L~L~~N-~L~~l~~~---~~~L~~L~L~~N~-L~~lp~--------~~~~L~~L~~~  352 (353)
T d1jl5a_         299 LPA-------LPPRLERLIASFN-HLAEVPEL---PQNLKQLHVEYNP-LREFPD--------IPESVEDLRMN  352 (353)
T ss_dssp             CCC-------CCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSSCCC--------CCTTCCEEECC
T ss_pred             ccc-------ccCCCCEEECCCC-cCCccccc---cCCCCEEECcCCc-CCCCCc--------cccccCeeECc
Confidence            763       2678999999875 68888864   3678999999997 554211        13356666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.3e-11  Score=107.87  Aligned_cols=214  Identities=18%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             eecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEEEEe
Q 018079            4 LLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLHLQF   83 (361)
Q Consensus         4 L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~   83 (361)
                      ++.+++ ++.++|..|.  .++++|++       ..+++..++                    +..+.++++|++|+++.
T Consensus        16 v~c~~~-~L~~iP~~ip--~~~~~L~L-------s~N~i~~i~--------------------~~~f~~l~~L~~L~ls~   65 (284)
T d1ozna_          16 TSCPQQ-GLQAVPVGIP--AASQRIFL-------HGNRISHVP--------------------AASFRACRNLTILWLHS   65 (284)
T ss_dssp             EECCSS-CCSSCCTTCC--TTCSEEEC-------TTSCCCEEC--------------------TTTTTTCTTCCEEECCS
T ss_pred             EEcCCC-CCCccCCCCC--CCCCEEEC-------cCCcCCCCC--------------------HHHhhcccccccccccc
Confidence            455555 6888887764  56788888       666666553                    01366778888888887


Q ss_pred             cCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccC-CCCC-chhhhcCccCCeeeecCC
Q 018079           84 GGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYG-GNIF-PKWLTSLANLRELNLSLC  161 (361)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~-p~~~~~l~~L~~L~l~~~  161 (361)
                      +......                              .........++++.+..+. ...+ +..+..+++|+.|++.++
T Consensus        66 n~l~~i~------------------------------~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n  115 (284)
T d1ozna_          66 NVLARID------------------------------AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (284)
T ss_dssp             SCCCEEC------------------------------TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccccc------------------------------cccccccccccccccccccccccccchhhcccccCCEEecCCc
Confidence            7653311                              1223334555555544322 2222 334456666666666665


Q ss_pred             CCCCCCCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhc
Q 018079          162 FNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRIT  238 (361)
Q Consensus       162 ~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~  238 (361)
                      . ...++.  +...+ |+.+++++ ..++.++...                   +..+++|+.|++.++ .+..++.   
T Consensus       116 ~-~~~~~~~~~~~~~~L~~l~l~~-N~l~~i~~~~-------------------f~~~~~L~~L~l~~N-~l~~l~~---  170 (284)
T d1ozna_         116 G-LQELGPGLFRGLAALQYLYLQD-NALQALPDDT-------------------FRDLGNLTHLFLHGN-RISSVPE---  170 (284)
T ss_dssp             C-CCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTT-------------------TTTCTTCCEEECCSS-CCCEECT---
T ss_pred             c-cccccccccchhcccchhhhcc-ccccccChhH-------------------hccccchhhcccccC-cccccch---
Confidence            2 222222  34444 66666664 3345544332                   224566666666653 3443332   


Q ss_pred             cccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecC
Q 018079          239 RKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       239 ~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                        ..+.++++|+.+.+.++ .+..+ |..+..+++|++|+++++ .+..++.   -.++++++|+.|+++++
T Consensus       171 --~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~---~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         171 --RAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN-NLSALPT---EALAPLRALQYLRLNDN  235 (284)
T ss_dssp             --TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCH---HHHTTCTTCCEEECCSS
T ss_pred             --hhhccccccchhhhhhc-cccccChhHhhhhhhccccccccc-ccccccc---cccccccccCEEEecCC
Confidence              23445666666666664 33333 445555666666666663 3333331   13445666666666653

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.3e-12  Score=109.60  Aligned_cols=181  Identities=20%  Similarity=0.241  Sum_probs=131.1

Q ss_pred             HhcCCCCCccEEEecccCCCCCchh-hhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccC
Q 018079          122 EALQPPLNVEELWIIFYGGNIFPKW-LTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIE  197 (361)
Q Consensus       122 ~~l~~l~~L~~L~l~~~~~~~~p~~-~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~  197 (361)
                      .++..+++|++|+++++....++.. ...+..+..+.+.....+..++.  +..++ |+.|+++++. +..++...    
T Consensus        50 ~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~-~~~~~~~~----  124 (284)
T d1ozna_          50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGL----  124 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT----
T ss_pred             HHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcc-cccccccc----
Confidence            3567788899999988876654433 34677788887776667776654  77888 9999998754 34333322    


Q ss_pred             CCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch-hccCCCCcceE
Q 018079          198 ESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD-YLLQMTVLQNL  276 (361)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L  276 (361)
                                     +..+++|+.+++.+ ..++.++.     ..+..+++|+.|++.++ .++.++. .+..+++|+.+
T Consensus       125 ---------------~~~~~~L~~l~l~~-N~l~~i~~-----~~f~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l  182 (284)
T d1ozna_         125 ---------------FRGLAALQYLYLQD-NALQALPD-----DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRL  182 (284)
T ss_dssp             ---------------TTTCTTCCEEECCS-SCCCCCCT-----TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred             ---------------cchhcccchhhhcc-ccccccCh-----hHhccccchhhcccccC-cccccchhhhccccccchh
Confidence                           33678899999987 45665543     34567889999999885 6777755 44669999999


Q ss_pred             eeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCc
Q 018079          277 RIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       277 ~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~  334 (361)
                      .++++.-..-.|.    .+.++++|+.|+++++ .+..++ ..++.+++|++++++++|
T Consensus       183 ~l~~N~l~~i~~~----~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         183 LLHQNRVAHVHPH----AFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             ECCSSCCCEECTT----TTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             hhhhccccccChh----Hhhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence            9998643322333    5677899999999985 555555 788999999999999865

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.2e-10  Score=99.02  Aligned_cols=45  Identities=24%  Similarity=0.224  Sum_probs=22.2

Q ss_pred             cCCCCCccEEEecccC-CCC-CchhhhcCccCCeeeecCCCCCCCCCC
Q 018079          124 LQPPLNVEELWIIFYG-GNI-FPKWLTSLANLRELNLSLCFNCEHLPQ  169 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~-~~~-~p~~~~~l~~L~~L~l~~~~~~~~l~~  169 (361)
                      +..+++++++.+..+. ... .+.++..+++|+.+++.++ .+...+.
T Consensus        74 f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~  120 (242)
T d1xwdc1          74 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPD  120 (242)
T ss_dssp             EESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESC-CCCSCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccchh-hhccccc
Confidence            3445566666554332 222 2333445666666666664 3444433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.16  E-value=7.4e-10  Score=98.87  Aligned_cols=279  Identities=20%  Similarity=0.190  Sum_probs=142.9

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccc--eeceeEEcCCCCCCChHHHHHhhcCCCCCCce
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQ--LRGECSIEGLCNVSHVDEAERLQLSNKKNLLR   78 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~--L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~   78 (361)
                      |++|+++++ .++++|+.++   +|+.|++.+.    ....+..++  ++ .+.+.+-. +...     ..++++++|+.
T Consensus        60 L~~L~Ls~N-~l~~lp~~~~---~L~~L~l~~n----~l~~l~~lp~~L~-~L~L~~n~-l~~l-----p~~~~l~~L~~  124 (353)
T d1jl5a_          60 LESLVASCN-SLTELPELPQ---SLKSLLVDNN----NLKALSDLPPLLE-YLGVSNNQ-LEKL-----PELQNSSFLKI  124 (353)
T ss_dssp             CSEEECCSS-CCSSCCCCCT---TCCEEECCSS----CCSCCCSCCTTCC-EEECCSSC-CSSC-----CCCTTCTTCCE
T ss_pred             CCEEECCCC-CCcccccchh---hhhhhhhhhc----ccchhhhhccccc-cccccccc-cccc-----cchhhhcccee
Confidence            689999988 9999998765   5566666332    233333333  44 45444311 1111     12567889999


Q ss_pred             EEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchhhhcCccCCeeee
Q 018079           79 LHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNL  158 (361)
Q Consensus        79 L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l  158 (361)
                      |+++++......    .....+..+.+....        ......+..++.++.+.+.++.....+..   ....+.+..
T Consensus       125 L~l~~~~~~~~~----~~~~~l~~l~~~~~~--------~~~~~~l~~l~~l~~L~l~~n~~~~~~~~---~~~~~~l~~  189 (353)
T d1jl5a_         125 IDVDNNSLKKLP----DLPPSLEFIAAGNNQ--------LEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVA  189 (353)
T ss_dssp             EECCSSCCSCCC----CCCTTCCEEECCSSC--------CSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEEC
T ss_pred             eccccccccccc----cccccccchhhcccc--------ccccccccccccceecccccccccccccc---ccccccccc
Confidence            999877653321    111222223222211        01123355667788888877665444321   122233333


Q ss_pred             cCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCC--ccchhhhh
Q 018079          159 SLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGM--KELEEWNY  235 (361)
Q Consensus       159 ~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~--~~l~~~~~  235 (361)
                      .+ .....++....++ ++.+.++++. ...++.......   ................+++...++...  ..+..++.
T Consensus       190 ~~-~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  264 (353)
T d1jl5a_         190 GN-NILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLE---ALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP  264 (353)
T ss_dssp             CS-SCCSSCCCCTTCTTCCEEECCSSC-CSSCCSCCTTCC---EEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCT
T ss_pred             cc-cccccccccccccccccccccccc-cccccccccccc---ccccccccccccccccccccccccccccccccccccc
Confidence            33 2334445555566 6666666532 122221110000   000000000000111223333333221  11111111


Q ss_pred             hh-------cc-ccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEe
Q 018079          236 RI-------TR-KENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIG  307 (361)
Q Consensus       236 ~~-------~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~  307 (361)
                      ..       .. ......+++|++|++++| +++.+|..   +++|+.|++++| .++++|.+       +++|++|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~L~~l~~~-------~~~L~~L~L~  332 (353)
T d1jl5a_         265 NLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVPEL-------PQNLKQLHVE  332 (353)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCCC-------CTTCCEEECC
T ss_pred             hhcccccccCccccccccCCCCCEEECCCC-ccCccccc---cCCCCEEECCCC-cCCccccc-------cCCCCEEECc
Confidence            00       00 012235789999999986 68888854   688999999875 57777742       5689999999


Q ss_pred             cCCCCCccccccCCCCCCCeEEE
Q 018079          308 YCPKLKVLPDCLLRTTTLQKLTI  330 (361)
Q Consensus       308 ~c~~l~~l~~~l~~l~~L~~L~l  330 (361)
                      +|+ ++.+|+..   .+|+.|.+
T Consensus       333 ~N~-L~~lp~~~---~~L~~L~~  351 (353)
T d1jl5a_         333 YNP-LREFPDIP---ESVEDLRM  351 (353)
T ss_dssp             SSC-CSSCCCCC---TTCCEEEC
T ss_pred             CCc-CCCCCccc---cccCeeEC
Confidence            975 88998744   45666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.9e-11  Score=100.56  Aligned_cols=181  Identities=17%  Similarity=0.146  Sum_probs=103.1

Q ss_pred             hcCCCCCccEEEecccCCCC-Cc-hhhhcCccCCeeeecCCCCCCCCCC--CCCCc-cceEeccccccceeecccccccC
Q 018079          123 ALQPPLNVEELWIIFYGGNI-FP-KWLTSLANLRELNLSLCFNCEHLPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIE  197 (361)
Q Consensus       123 ~l~~l~~L~~L~l~~~~~~~-~p-~~~~~l~~L~~L~l~~~~~~~~l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~  197 (361)
                      ++..+++|++|+++++.... ++ .++..+++++.+.+..+..+..++.  +..++ |+.+.+.++. +...+....   
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~---  123 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHK---  123 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTT---
T ss_pred             Hhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhh-hcccccccc---
Confidence            45667778888887776544 22 2344677777777766555554443  56677 7777777642 333322110   


Q ss_pred             CCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccC-CCccEEEEecCCCCCccchhccCCCCcceE
Q 018079          198 ESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIM-PRLSSLEVSSCNKLKALPDYLLQMTVLQNL  276 (361)
Q Consensus       198 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L  276 (361)
                                     ...++.+..+...+ ..+..+..     ..+.++ ..++.+++.+ +.++.++..+...++++++
T Consensus       124 ---------------~~~l~~l~~~~~~n-~~l~~i~~-----~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~~~l~~~  181 (242)
T d1xwdc1         124 ---------------IHSLQKVLLDIQDN-INIHTIER-----NSFVGLSFESVILWLNK-NGIQEIHNCAFNGTQLDEL  181 (242)
T ss_dssp             ---------------TCBSSCEEEEEESC-TTCCEECT-----TSSTTSBSSCEEEECCS-SCCCEECTTTTTTCCEEEE
T ss_pred             ---------------cccccccccccccc-cccccccc-----cccccccccceeeeccc-ccccccccccccchhhhcc
Confidence                           11233333333332 23333322     122233 3566677765 4677777766666777776


Q ss_pred             eeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCC
Q 018079          277 RIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       277 ~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c  333 (361)
                      ....+..++.+|.-   .+.++++|++|+++++ +++.+| ..+.+++.|+.+++.++
T Consensus       182 ~~l~~n~l~~l~~~---~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         182 NLSDNNNLEELPND---VFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             ECTTCTTCCCCCTT---TTTTSCCCSEEECTTS-CCCCCCSSSCTTCCEEESSSEESS
T ss_pred             ccccccccccccHH---HhcCCCCCCEEECCCC-cCCccCHHHHcCCcccccCcCCCC
Confidence            66556667766631   2456788888888774 577777 45666666666665543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.4e-10  Score=91.03  Aligned_cols=129  Identities=16%  Similarity=0.192  Sum_probs=97.3

Q ss_pred             cCCCCCccEEEecccCCCCCchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccccccceeecccccccCCCCCC
Q 018079          124 LQPPLNVEELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSED  202 (361)
Q Consensus       124 l~~l~~L~~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~  202 (361)
                      .....++++|+++++....++.....+++|+.|+++++ .+..++.+..++ |++|+++++. ++.++..+         
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l~~~~---------   82 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRIGEGL---------   82 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEECSCH---------
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCCCccc---------
Confidence            34567899999999998888876678999999999996 677787788899 9999999854 77776543         


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccch----hccCCCCcceEee
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPD----YLLQMTVLQNLRI  278 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~----~~~~l~~L~~L~l  278 (361)
                                +..+++|+.|++.++ .+.++..    ...+..+++|+.|++.+++ +...+.    .+..+++|+.|+-
T Consensus        83 ----------~~~l~~L~~L~L~~N-~i~~~~~----l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          83 ----------DQALPDLTELILTNN-SLVELGD----LDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ----------HHHCTTCCEEECCSC-CCCCGGG----GGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ----------cccccccccceeccc-ccccccc----ccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeCC
Confidence                      236899999999885 4555543    2345678999999998863 555553    2455777777764


Q ss_pred             c
Q 018079          279 F  279 (361)
Q Consensus       279 ~  279 (361)
                      .
T Consensus       147 ~  147 (162)
T d1a9na_         147 Q  147 (162)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=1.1e-08  Score=77.27  Aligned_cols=13  Identities=31%  Similarity=0.319  Sum_probs=5.2

Q ss_pred             hcCccCCeeeecC
Q 018079          148 TSLANLRELNLSL  160 (361)
Q Consensus       148 ~~l~~L~~L~l~~  160 (361)
                      ..+++|++|++++
T Consensus        17 ~~l~~L~~L~ls~   29 (124)
T d1dcea3          17 EQLLLVTHLDLSH   29 (124)
T ss_dssp             GGGTTCCEEECCS
T ss_pred             ccCCCCCEEECCC
Confidence            3333444444433

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=7.9e-09  Score=78.07  Aligned_cols=101  Identities=24%  Similarity=0.358  Sum_probs=77.6

Q ss_pred             cEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccccccCCCC
Q 018079          220 KSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIP  299 (361)
Q Consensus       220 ~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~  299 (361)
                      +.|++++ .+++.++       .++.+++|++|++++ +.++.+|..+..+++|+.|++++ +.++.+|     .+.+++
T Consensus         1 R~L~Ls~-n~l~~l~-------~l~~l~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~-N~i~~l~-----~~~~l~   65 (124)
T d1dcea3           1 RVLHLAH-KDLTVLC-------HLEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVD-----GVANLP   65 (124)
T ss_dssp             SEEECTT-SCCSSCC-------CGGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-----GGTTCS
T ss_pred             CEEEcCC-CCCCCCc-------ccccCCCCCEEECCC-CccCcchhhhhhhhccccccccc-ccccccC-----cccccc
Confidence            4567766 3454432       355788999999987 57888988888899999999998 5777776     466788


Q ss_pred             CccEEEEecCCCCCccc--cccCCCCCCCeEEEeCCccc
Q 018079          300 RLSSLRIGYCPKLKVLP--DCLLRTTTLQKLTIWGCPLL  336 (361)
Q Consensus       300 ~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~~l  336 (361)
                      +|+.|++.+ +.++.++  ..+..+++|+.+++++++-.
T Consensus        66 ~L~~L~l~~-N~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          66 RLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCeEECCC-CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            999999988 4677766  45788899999999988743

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.1e-09  Score=83.69  Aligned_cols=120  Identities=16%  Similarity=0.043  Sum_probs=82.6

Q ss_pred             CceeecCCCCcccccCccCCCccccceecceeeecCCCCCcccccceeceeEEcCCCCCCChHHHHHhhcCCCCCCceEE
Q 018079            1 MRSLLNFGTNSLKYMPIGISKLTSLRRLDKFVVGGGVDGSNTGRLQLRGECSIEGLCNVSHVDEAERLQLSNKKNLLRLH   80 (361)
Q Consensus         1 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~~~l~~L~L~~~l~l~~l~~~~~~~~~~~~~l~~l~~L~~L~   80 (361)
                      ||+|++++| +|..+|..+..+.+|++|++       ..+.+..++                      .+..+++|+.|+
T Consensus        20 lr~L~L~~n-~I~~i~~~~~~l~~L~~L~L-------s~N~i~~l~----------------------~~~~l~~L~~L~   69 (162)
T d1a9na_          20 DRELDLRGY-KIPVIENLGATLDQFDAIDF-------SDNEIRKLD----------------------GFPLLRRLKTLL   69 (162)
T ss_dssp             CEEEECTTS-CCCSCCCGGGGTTCCSEEEC-------CSSCCCEEC----------------------CCCCCSSCCEEE
T ss_pred             CcEEECCCC-CCCccCccccccccCCEEEC-------CCCCCCccC----------------------CcccCcchhhhh
Confidence            578999998 88888866677889999999       566555442                      155677899999


Q ss_pred             EEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCch--hhhcCccCCeeee
Q 018079           81 LQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPK--WLTSLANLRELNL  158 (361)
Q Consensus        81 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~--~~~~l~~L~~L~l  158 (361)
                      ++.|......                              ......+++|++|++++|....++.  .+..+++|+.|++
T Consensus        70 ls~N~i~~l~------------------------------~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l  119 (162)
T d1a9na_          70 VNNNRICRIG------------------------------EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI  119 (162)
T ss_dssp             CCSSCCCEEC------------------------------SCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred             cccccccCCC------------------------------ccccccccccccceeccccccccccccccccccccchhhc
Confidence            9988754311                              0112346788888888887766553  4567888888888


Q ss_pred             cCCCCCCCCCC-----CCCCc-cceEecc
Q 018079          159 SLCFNCEHLPQ-----LGKLP-LEKLQLK  181 (361)
Q Consensus       159 ~~~~~~~~l~~-----l~~l~-L~~L~l~  181 (361)
                      ++| .+...+.     +..+| |+.|+-.
T Consensus       120 ~~N-~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_         120 LRN-PVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             CCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence            886 3444442     45667 7777543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.65  E-value=7.3e-08  Score=78.46  Aligned_cols=108  Identities=16%  Similarity=0.227  Sum_probs=82.5

Q ss_pred             CCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCcc-chhccCCCCcceEeeccCCCcccCCccccccc
Q 018079          217 PKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKAL-PDYLLQMTVLQNLRIFFCENMEELPILEDHRT  295 (361)
Q Consensus       217 ~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l  295 (361)
                      +++++|+|++. .+.....    ...+..+++|+.|+++++ .+..+ +..+..+++|++|+++++ .++.+|.   -.+
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~----~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~---~~F   98 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISS----DGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN-KIKEISN---KMF   98 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCC----SCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC-CCCEECS---SSS
T ss_pred             CCCCEEEeCCC-CCccccc----ccccCCCceEeeeecccc-ccccccccccccccccceeeeccc-cccccCH---HHH
Confidence            68999999984 4543332    345668999999999885 45555 445666999999999984 6666653   146


Q ss_pred             CCCCCccEEEEecCCCCCccc-cccCCCCCCCeEEEeCCcc
Q 018079          296 TDIPRLSSLRIGYCPKLKVLP-DCLLRTTTLQKLTIWGCPL  335 (361)
Q Consensus       296 ~~l~~L~~L~l~~c~~l~~l~-~~l~~l~~L~~L~l~~c~~  335 (361)
                      +++++|++|++++ +.++.++ +.|..+++|+++++++++.
T Consensus        99 ~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_          99 LGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             TTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             hCCCcccccccCC-ccccccCHHHhcCCccccccccccccc
Confidence            7789999999998 5788887 5688999999999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.45  E-value=3.6e-07  Score=74.21  Aligned_cols=119  Identities=17%  Similarity=0.197  Sum_probs=60.7

Q ss_pred             EEEecccCCCCCchhhhcCccCCeeeecCCCCCCC-CCC--CCCCc-cceEeccccccceeecccccccCCCCCCCCCCC
Q 018079          132 ELWIIFYGGNIFPKWLTSLANLRELNLSLCFNCEH-LPQ--LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSS  207 (361)
Q Consensus       132 ~L~l~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-l~~--l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~  207 (361)
                      +++.++.....+|+.+  .+++++|+++++ .+.. ++.  +..++ |+.|+++++. +..++...              
T Consensus        12 ~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~--------------   73 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNA--------------   73 (192)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTT--------------
T ss_pred             EEEEeCCCcCccCCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc-cccccccc--------------
Confidence            4454444444455433  245666666664 3322 222  44555 6666665432 33333322              


Q ss_pred             CCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchh-ccCCCCcceEeecc
Q 018079          208 SSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFF  280 (361)
Q Consensus       208 ~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~  280 (361)
                           +..+++|++|++++. ++..++.     ..+.++++|+.|++++ +.++.++.. +..+++|+++++++
T Consensus        74 -----~~~~~~L~~L~Ls~N-~l~~l~~-----~~F~~l~~L~~L~L~~-N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          74 -----FEGASHIQELQLGEN-KIKEISN-----KMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             -----TTTCTTCCEEECCSC-CCCEECS-----SSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTT
T ss_pred             -----cccccccceeeeccc-cccccCH-----HHHhCCCcccccccCC-ccccccCHHHhcCCcccccccccc
Confidence                 224566666666652 4444433     2345566666666666 355555443 34466666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.45  E-value=1.1e-09  Score=90.08  Aligned_cols=110  Identities=20%  Similarity=0.260  Sum_probs=82.7

Q ss_pred             ccCCCCccEEEEcCCccchhhhhhhccccccccCCCccEEEEecCCCCCccchhccCCCCcceEeeccCCCcccCCcccc
Q 018079          213 VIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPRLSSLEVSSCNKLKALPDYLLQMTVLQNLRIFFCENMEELPILED  292 (361)
Q Consensus       213 l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~L~~  292 (361)
                      +..+++|++|+++++ .++++.       .+..+++|+.|+++++ .+++++.....+++|+.|+++++ .++.++    
T Consensus        44 l~~L~~L~~L~Ls~n-~I~~i~-------~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~----  109 (198)
T d1m9la_          44 LSTLKACKHLALSTN-NIEKIS-------SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS----  109 (198)
T ss_dssp             HHHTTTCCEEECSEE-EESCCC-------CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCHH----
T ss_pred             HhcccccceeECccc-CCCCcc-------cccCCccccChhhccc-ccccccccccccccccccccccc-cccccc----
Confidence            447899999999874 455432       3557899999999885 67778765555778999999885 555554    


Q ss_pred             cccCCCCCccEEEEecCCCCCccc--cccCCCCCCCeEEEeCCccchh
Q 018079          293 HRTTDIPRLSSLRIGYCPKLKVLP--DCLLRTTTLQKLTIWGCPLLEN  338 (361)
Q Consensus       293 L~l~~l~~L~~L~l~~c~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~  338 (361)
                       .+.++++|+.|+++++ .++.++  ..+..+++|+.|+++++|-...
T Consensus       110 -~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         110 -GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             -HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             -cccccccccccccccc-hhccccccccccCCCccceeecCCCccccC
Confidence             3455788999999884 677776  4688999999999999975443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.37  E-value=5.2e-09  Score=85.99  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=18.3

Q ss_pred             CchhhhcCccCCeeeecCCCCCCCCCCCCCCc-cceEeccc
Q 018079          143 FPKWLTSLANLRELNLSLCFNCEHLPQLGKLP-LEKLQLKN  182 (361)
Q Consensus       143 ~p~~~~~l~~L~~L~l~~~~~~~~l~~l~~l~-L~~L~l~~  182 (361)
                      ++..+..+++|++|+++++ .+..++.+..++ |+.|++++
T Consensus        40 l~~sl~~L~~L~~L~Ls~n-~I~~i~~l~~l~~L~~L~Ls~   79 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGR   79 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEE-EESCCCCHHHHTTCCEEECCE
T ss_pred             hhhHHhcccccceeECccc-CCCCcccccCCccccChhhcc
Confidence            3444444555555555543 344444444444 55555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.22  E-value=6.3e-07  Score=79.58  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=62.7

Q ss_pred             cCCCCccEEEEcCCccchhh-hh-hhccccccccCCCccEEEEecCCCCC-----ccchhccCCCCcceEeeccCCCccc
Q 018079          214 IAFPKLKSLEIDGMKELEEW-NY-RITRKENISIMPRLSSLEVSSCNKLK-----ALPDYLLQMTVLQNLRIFFCENMEE  286 (361)
Q Consensus       214 ~~~~~L~~L~L~~~~~l~~~-~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~  286 (361)
                      ..+++|+.|++.++. +..- .. .+  ...+..+++|+.|+++++ .+.     .+...+..+++|++|++++|. +..
T Consensus       183 ~~~~~L~~L~L~~n~-i~~~g~~~~l--~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~  257 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNG-IRPEGIEHLL--LEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSA  257 (344)
T ss_dssp             HHCTTCCEEECCSSC-CCHHHHHHHH--HTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCH
T ss_pred             hhhhhhccccccccc-ccccccccch--hhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCc-cCc
Confidence            345677777777653 2211 00 00  123456777777877764 332     233345567777788877763 221


Q ss_pred             C--Ccc-cccccCCCCCccEEEEecCCCCCc-----cccccC-CCCCCCeEEEeCCcc
Q 018079          287 L--PIL-EDHRTTDIPRLSSLRIGYCPKLKV-----LPDCLL-RTTTLQKLTIWGCPL  335 (361)
Q Consensus       287 l--p~L-~~L~l~~l~~L~~L~l~~c~~l~~-----l~~~l~-~l~~L~~L~l~~c~~  335 (361)
                      -  ..+ +.+.-...+.|++|++++|. ++.     +...+. ++++|+.|+++++.-
T Consensus       258 ~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         258 RGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             hhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            0  000 00011124678889998854 433     333342 567889999887653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.5e-06  Score=65.08  Aligned_cols=85  Identities=25%  Similarity=0.214  Sum_probs=47.8

Q ss_pred             CCCCc-cceEeccccccceeecccccccCCCCCCCCCCCCCCCcccCCCCccEEEEcCCccchhhhhhhccccccccCCC
Q 018079          170 LGKLP-LEKLQLKNLKSVKRVGNEFLGIEESSEDGPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNYRITRKENISIMPR  248 (361)
Q Consensus       170 l~~l~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~~l~~  248 (361)
                      +..++ ++.|++.+...++.++...                   +.++++|+.|++++. ++..+..     ..+..+++
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~-------------------f~~l~~L~~L~Ls~N-~l~~i~~-----~~f~~l~~   81 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRD-------------------LRGLGELRNLTIVKS-GLRFVAP-----DAFHFTPR   81 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGG-------------------SCSCCCCSEEECCSS-CCCEECT-----TGGGSCSC
T ss_pred             ccCccccCeeecCCCccccccCchh-------------------hccccccCcceeecc-ccCCccc-----cccccccc
Confidence            44455 6666665544455555443                   235666666666653 4444432     34456666


Q ss_pred             ccEEEEecCCCCCccchhccCCCCcceEeecc
Q 018079          249 LSSLEVSSCNKLKALPDYLLQMTVLQNLRIFF  280 (361)
Q Consensus       249 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~  280 (361)
                      |+.|++++ ++++.+|..+....+|+.|++++
T Consensus        82 L~~L~Ls~-N~l~~l~~~~~~~~~l~~L~L~~  112 (156)
T d2ifga3          82 LSRLNLSF-NALESLSWKTVQGLSLQELVLSG  112 (156)
T ss_dssp             CCEEECCS-SCCSCCCSTTTCSCCCCEEECCS
T ss_pred             ccceeccC-CCCcccChhhhccccccccccCC
Confidence            77777666 45666666555544566666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.5e-07  Score=83.82  Aligned_cols=85  Identities=25%  Similarity=0.260  Sum_probs=47.7

Q ss_pred             CCCccEEEEecCCCCCcc-----chhccCCCCcceEeeccCCCcccCCccccc--cc-CCCCCccEEEEecCCCCCc---
Q 018079          246 MPRLSSLEVSSCNKLKAL-----PDYLLQMTVLQNLRIFFCENMEELPILEDH--RT-TDIPRLSSLRIGYCPKLKV---  314 (361)
Q Consensus       246 l~~L~~L~l~~c~~l~~l-----~~~~~~l~~L~~L~l~~c~~l~~lp~L~~L--~l-~~l~~L~~L~l~~c~~l~~---  314 (361)
                      .+.|+.+.+.+|. +...     ...+...++|++|+++++ .+..-. ...+  .+ ...+.|++|++++| .+++   
T Consensus       311 ~~~L~~l~l~~~~-l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g-~~~l~~~l~~~~~~L~~L~Ls~n-~i~~~~~  386 (460)
T d1z7xw1         311 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAG-VRELCQGLGQPGSVLRVLWLADC-DVSDSSC  386 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHH-HHHHHHHHTSTTCCCCEEECTTS-CCCHHHH
T ss_pred             ccccccccccccc-hhhhhhhhcccccccccchhhhheeee-cccCcc-cchhhhhhhcccCCCCEEECCCC-CCChHHH
Confidence            4567888777763 3221     222234667888888875 332100 0000  11 12456888888887 4443   


Q ss_pred             --cccccCCCCCCCeEEEeCCc
Q 018079          315 --LPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       315 --l~~~l~~l~~L~~L~l~~c~  334 (361)
                        +++.+..+++|++|++++++
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N~  408 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNNC  408 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHHHHHhcCCCCCEEECCCCc
Confidence              44556667788888888774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=5e-08  Score=89.70  Aligned_cols=36  Identities=25%  Similarity=0.189  Sum_probs=26.7

Q ss_pred             CCCccEEEEecCCCCCc-----cccccC-CCCCCCeEEEeCCc
Q 018079          298 IPRLSSLRIGYCPKLKV-----LPDCLL-RTTTLQKLTIWGCP  334 (361)
Q Consensus       298 l~~L~~L~l~~c~~l~~-----l~~~l~-~l~~L~~L~l~~c~  334 (361)
                      .++|++|+++++ .+.+     ++.++. ..+.|++|++++|.
T Consensus       339 ~~~L~~L~Ls~N-~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~  380 (460)
T d1z7xw1         339 NRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD  380 (460)
T ss_dssp             CSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             ccchhhhheeee-cccCcccchhhhhhhcccCCCCEEECCCCC
Confidence            678999999986 4533     444453 56789999999995

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.15  E-value=9e-07  Score=78.56  Aligned_cols=197  Identities=17%  Similarity=0.190  Sum_probs=111.1

Q ss_pred             HHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCC--
Q 018079           65 AERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNI--  142 (361)
Q Consensus        65 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--  142 (361)
                      .....+..+++|++|+++.|......                          ...+.+.+...++|++|++++|....  
T Consensus        84 ~l~~~l~~~~~L~~L~L~~n~i~~~~--------------------------~~~l~~~l~~~~~L~~L~l~~n~l~~~~  137 (344)
T d2ca6a1          84 LLLQALLKCPKLHTVRLSDNAFGPTA--------------------------QEPLIDFLSKHTPLEHLYLHNNGLGPQA  137 (344)
T ss_dssp             HHHHHHTTCTTCCEEECCSCCCCTTT--------------------------HHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred             HHHHHHhhCCCccccccccccccccc--------------------------ccchhhhhcccccchheecccccccccc
Confidence            34555788899999999988654411                          44555666667788888888765311  


Q ss_pred             ---Cchh---------hhcCccCCeeeecCCCCCCC-----CCC-CCCCc-cceEeccccccceeec-ccccccCCCCCC
Q 018079          143 ---FPKW---------LTSLANLRELNLSLCFNCEH-----LPQ-LGKLP-LEKLQLKNLKSVKRVG-NEFLGIEESSED  202 (361)
Q Consensus       143 ---~p~~---------~~~l~~L~~L~l~~~~~~~~-----l~~-l~~l~-L~~L~l~~~~~l~~l~-~~~~~~~~~~~~  202 (361)
                         +...         ....+.|+.+.++++ .+..     +.. +...+ ++.|+++++. +.... ..+....     
T Consensus       138 ~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~g~~~~l~~~-----  210 (344)
T d2ca6a1         138 GAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNG-IRPEGIEHLLLEG-----  210 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSC-CCHHHHHHHHHTT-----
T ss_pred             cccccccccccccccccccCcccceeecccc-cccccccccccchhhhhhhhccccccccc-ccccccccchhhh-----
Confidence               1111         124567888887765 2321     111 23445 8888887653 33211 0111111     


Q ss_pred             CCCCCCCCCcccCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCCc-----cchhcc--CCCCcc
Q 018079          203 GPSSSSSSPSVIAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLKA-----LPDYLL--QMTVLQ  274 (361)
Q Consensus       203 ~~~~~~~~~~l~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~~-----l~~~~~--~l~~L~  274 (361)
                                +..+++|+.|+++++. +..... .+  ...+..+++|++|++++|. +..     +...+.  ..++|+
T Consensus       211 ----------l~~~~~L~~L~Ls~N~-i~~~g~~~L--~~~l~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~  276 (344)
T d2ca6a1         211 ----------LAYCQELKVLDLQDNT-FTHLGSSAL--AIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQ  276 (344)
T ss_dssp             ----------GGGCTTCCEEECCSSC-CHHHHHHHH--HHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCC
T ss_pred             ----------hcchhhhccccccccc-ccccccccc--cccccccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCC
Confidence                      4467889999998753 332111 00  1245578889999998874 442     222222  246789


Q ss_pred             eEeeccCCCccc--CCcccccccCCCCCccEEEEecC
Q 018079          275 NLRIFFCENMEE--LPILEDHRTTDIPRLSSLRIGYC  309 (361)
Q Consensus       275 ~L~l~~c~~l~~--lp~L~~L~l~~l~~L~~L~l~~c  309 (361)
                      +|+++++. ++.  +..+...--.++++|++|+++++
T Consensus       277 ~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         277 TLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             EEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             EEECCCCc-CChHHHHHHHHHHHccCCCCCEEECCCC
Confidence            99998853 432  11111110123678888888874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.9e-06  Score=64.40  Aligned_cols=88  Identities=25%  Similarity=0.287  Sum_probs=53.1

Q ss_pred             cccCCCccEEEEecCCCCCccchh-ccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccccccCC
Q 018079          243 ISIMPRLSSLEVSSCNKLKALPDY-LLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLPDCLLR  321 (361)
Q Consensus       243 ~~~l~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~~~l~~  321 (361)
                      +..+++|++|++.+.+.++.++.. +..+++|+.|+++++ .++.++.   -.+.++++|++|++++ ++++.+|..+..
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~---~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~  101 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP---DAFHFTPRLSRLNLSF-NALESLSWKTVQ  101 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT---TGGGSCSCCCEEECCS-SCCSCCCSTTTC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccc---ccccccccccceeccC-CCCcccChhhhc
Confidence            345666777777655556666543 455677777777763 4444432   1345566777777776 466777744434


Q ss_pred             CCCCCeEEEeCCcc
Q 018079          322 TTTLQKLTIWGCPL  335 (361)
Q Consensus       322 l~~L~~L~l~~c~~  335 (361)
                      ..+|+.|+++++|-
T Consensus       102 ~~~l~~L~L~~Np~  115 (156)
T d2ifga3         102 GLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCCCEEECCSSCC
T ss_pred             cccccccccCCCcc
Confidence            44677777777653

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=7.9e-05  Score=58.09  Aligned_cols=85  Identities=19%  Similarity=0.065  Sum_probs=55.3

Q ss_pred             HhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCCCCchh
Q 018079           67 RLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGNIFPKW  146 (361)
Q Consensus        67 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~  146 (361)
                      .....++++|+.|++++|....                            ...+...+..+++|++|+++++....++..
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~----------------------------l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l  109 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYR----------------------------LDDMSSIVQKAPNLKILNLSGNELKSEREL  109 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCC----------------------------CSGGGTHHHHSTTCCCCCCTTSCCCCGGGH
T ss_pred             HHHHHhCCCCCEeeCCCccccC----------------------------CchhHHHHhhCCcccccccccCccccchhh
Confidence            3344678999999999998654                            222233445678899999999888776652


Q ss_pred             h-hcCccCCeeeecCCCCCCCCCC--------CCCCc-cceEe
Q 018079          147 L-TSLANLRELNLSLCFNCEHLPQ--------LGKLP-LEKLQ  179 (361)
Q Consensus       147 ~-~~l~~L~~L~l~~~~~~~~l~~--------l~~l~-L~~L~  179 (361)
                      . ....+|+.+++.+++-......        +..+| |+.|+
T Consensus       110 ~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         110 DKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            1 2445788899988643332221        34567 77663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0018  Score=50.02  Aligned_cols=80  Identities=19%  Similarity=0.151  Sum_probs=37.4

Q ss_pred             cCCCccEEEEecCCCCCccc---hhccCCCCcceEeeccCCCcccCCcccccccCCCCCccEEEEecCCCCCccc-----
Q 018079          245 IMPRLSSLEVSSCNKLKALP---DYLLQMTVLQNLRIFFCENMEELPILEDHRTTDIPRLSSLRIGYCPKLKVLP-----  316 (361)
Q Consensus       245 ~l~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp~L~~L~l~~l~~L~~L~l~~c~~l~~l~-----  316 (361)
                      .+++|+.|+++++ +++.++   ..+..+++|+.|++++ +.+++++.+..+   ....|+.|++.+++-.....     
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~-N~i~~l~~l~~l---~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG-NELKSERELDKI---KGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTT-SCCCCGGGHHHH---TTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCccccccccc-Cccccchhhhhh---hccccceeecCCCCcCcCcccchhH
Confidence            4556666666553 444432   2233456666666665 344444432221   12345555555543322211     


Q ss_pred             --cccCCCCCCCeEE
Q 018079          317 --DCLLRTTTLQKLT  329 (361)
Q Consensus       317 --~~l~~l~~L~~L~  329 (361)
                        ..+..+|+|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2245566666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.33  E-value=0.0058  Score=47.21  Aligned_cols=96  Identities=14%  Similarity=0.100  Sum_probs=64.1

Q ss_pred             hHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCCC
Q 018079           62 VDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGGN  141 (361)
Q Consensus        62 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  141 (361)
                      +.+.+.....+.++|++|+++++....                         .+....+..++...++|++|++++|...
T Consensus         3 v~~~l~~l~~n~~~L~~L~L~~~~~i~-------------------------~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_           3 VESCINRLREDDTDLKEVNINNMKRVS-------------------------KERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             HHHHHHHHHTTCSSCCEEECTTCCSSC-------------------------HHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             HHHHHHHHHhCCCCCcEEEeCCCCCCC-------------------------HHHHHHHHHHHhhCCccceeeccccccc
Confidence            334455556778899999998543221                         1114456778888899999999988653


Q ss_pred             C-----CchhhhcCccCCeeeecCCCCCCC--CC----CCCCCc-cceEecccc
Q 018079          142 I-----FPKWLTSLANLRELNLSLCFNCEH--LP----QLGKLP-LEKLQLKNL  183 (361)
Q Consensus       142 ~-----~p~~~~~l~~L~~L~l~~~~~~~~--l~----~l~~l~-L~~L~l~~~  183 (361)
                      .     +...+...+.|+.|++++| .++.  ..    .+..-+ |++|+++++
T Consensus        58 ~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          58 DSEARGLIELIETSPSLRVLNVESN-FLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             hhHHHHHhhhhhhcccccceeeehh-hcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            2     2333446788999999997 4442  11    155566 999999864

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.58  E-value=0.01  Score=45.56  Aligned_cols=98  Identities=21%  Similarity=0.151  Sum_probs=62.4

Q ss_pred             ChHHHHHhhcCCCCCCceEEEEecCCCCCCcchhhhhhcccccccccccccccchhhHHHHHhcCCCCCccEEEecccCC
Q 018079           61 HVDEAERLQLSNKKNLLRLHLQFGGKDEDWRNEEEEEEEGEVVDGEDEEGRRKNEKDKQLLEALQPPLNVEELWIIFYGG  140 (361)
Q Consensus        61 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  140 (361)
                      ++.+.+.....+.++|++|++++.....                         .+....+..++...++|++|++++|..
T Consensus         4 ~i~~~l~~~~~~~~~L~~L~L~~~~~i~-------------------------~~~~~~l~~al~~n~~L~~L~Ls~n~l   58 (166)
T d1io0a_           4 DVEETLKRIQNNDPDLEEVNLNNIMNIP-------------------------VPTLKACAEALKTNTYVKKFSIVGTRS   58 (166)
T ss_dssp             CHHHHHHHHHTTCTTCCEEECTTCTTCC-------------------------HHHHHHHHHHHTTCCSCCEEECTTSCC
T ss_pred             cHHHHHHHHHhcCCCCcEEEcCCCCCCC-------------------------HHHHHHHHHHHhcCCccCeeeccCCcc
Confidence            4455566667788999999987533211                         111455677888889999999998864


Q ss_pred             CC-----CchhhhcCccCCeeeecCCCCCC-CCC----CCCCCc-cceEecccc
Q 018079          141 NI-----FPKWLTSLANLRELNLSLCFNCE-HLP----QLGKLP-LEKLQLKNL  183 (361)
Q Consensus       141 ~~-----~p~~~~~l~~L~~L~l~~~~~~~-~l~----~l~~l~-L~~L~l~~~  183 (361)
                      ..     +-..+...+.++.+++++|.... ...    .+...+ ++.+++..+
T Consensus        59 ~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~  112 (166)
T d1io0a_          59 NDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQ  112 (166)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCC
T ss_pred             cHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccC
Confidence            32     22233467789999998874322 111    144556 787777643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.86  E-value=0.026  Score=43.25  Aligned_cols=115  Identities=13%  Similarity=0.093  Sum_probs=71.8

Q ss_pred             cCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCC-----ccchhccCCCCcceEeeccCCCccc-
Q 018079          214 IAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLK-----ALPDYLLQMTVLQNLRIFFCENMEE-  286 (361)
Q Consensus       214 ~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~-  286 (361)
                      ...|+|++|+|.++..+..-.. .+  ...+...+.|++|++++|. +.     .+...+...++|++|++++| .+.. 
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l--~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSL--IEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESN-FLTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHH--HHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHH--HHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehh-hcchH
Confidence            3468999999988655543221 01  1245567889999999873 43     22233445789999999987 3432 


Q ss_pred             -CCcccccccCCCCCccEEEEecCC--CCC-----ccccccCCCCCCCeEEEeCC
Q 018079          287 -LPILEDHRTTDIPRLSSLRIGYCP--KLK-----VLPDCLLRTTTLQKLTIWGC  333 (361)
Q Consensus       287 -lp~L~~L~l~~l~~L~~L~l~~c~--~l~-----~l~~~l~~l~~L~~L~l~~c  333 (361)
                       ...+-. .+...++|++|++.++.  .+.     .+...+..-++|+.+++...
T Consensus        88 g~~~l~~-aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          88 LLARLLR-STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHHHH-HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHH-HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence             111110 24446789999998752  221     14455666788999988765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.81  E-value=0.042  Score=41.89  Aligned_cols=117  Identities=16%  Similarity=0.141  Sum_probs=71.6

Q ss_pred             cCCCCccEEEEcCCccchhhhh-hhccccccccCCCccEEEEecCCCCC-----ccchhccCCCCcceEeeccCCCccc-
Q 018079          214 IAFPKLKSLEIDGMKELEEWNY-RITRKENISIMPRLSSLEVSSCNKLK-----ALPDYLLQMTVLQNLRIFFCENMEE-  286 (361)
Q Consensus       214 ~~~~~L~~L~L~~~~~l~~~~~-~~~~~~~~~~l~~L~~L~l~~c~~l~-----~l~~~~~~l~~L~~L~l~~c~~l~~-  286 (361)
                      ...|+|++|++.++..+..-.. .+  ...+...++|++|++++| .+.     .+...+...++++.+++++|.--.. 
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l--~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKAC--AEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHH--HHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHH--HHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            4568999999988655542221 01  124457889999999987 443     2233345578899999987632111 


Q ss_pred             CCcccccccCCCCCccEEEEecCC-CCCc-----cccccCCCCCCCeEEEeCCc
Q 018079          287 LPILEDHRTTDIPRLSSLRIGYCP-KLKV-----LPDCLLRTTTLQKLTIWGCP  334 (361)
Q Consensus       287 lp~L~~L~l~~l~~L~~L~l~~c~-~l~~-----l~~~l~~l~~L~~L~l~~c~  334 (361)
                      ...+.. .+...++|+.+++..+. .+.+     +...+...++|+.|++....
T Consensus        91 ~~~l~~-~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          91 ILALVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHH-HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            000000 23346788888886543 4433     44566778899999987653